Query 008363
Match_columns 568
No_of_seqs 706 out of 3813
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 22:52:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.1E-36 1.1E-40 282.0 23.2 272 90-399 148-472 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.6E-35 9.9E-40 279.2 20.9 265 96-404 172-456 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.7E-34 3.6E-39 271.8 23.7 267 95-403 111-434 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-34 2.8E-39 276.1 19.2 244 78-363 196-458 (459)
5 KOG0263 Transcription initiati 100.0 1.7E-33 3.7E-38 288.1 22.0 208 90-366 442-650 (707)
6 KOG0286 G-protein beta subunit 100.0 1.6E-30 3.5E-35 237.5 28.0 267 93-404 49-341 (343)
7 KOG0263 Transcription initiati 100.0 1.2E-31 2.6E-36 274.6 20.5 274 88-405 365-646 (707)
8 KOG0286 G-protein beta subunit 100.0 1.7E-30 3.7E-35 237.3 23.7 231 62-363 110-343 (343)
9 KOG0279 G protein beta subunit 100.0 2.9E-29 6.4E-34 227.9 25.9 239 92-365 56-313 (315)
10 KOG0315 G-protein beta subunit 100.0 1.7E-29 3.8E-34 225.7 23.6 230 123-383 11-306 (311)
11 KOG0279 G protein beta subunit 100.0 6E-29 1.3E-33 225.9 27.3 266 93-401 9-306 (315)
12 KOG0645 WD40 repeat protein [G 100.0 1.3E-28 2.9E-33 222.8 26.4 216 91-365 6-225 (312)
13 KOG0277 Peroxisomal targeting 100.0 2E-29 4.2E-34 226.0 18.6 202 102-367 62-267 (311)
14 KOG0273 Beta-transducin family 100.0 1.2E-28 2.6E-33 238.3 25.2 249 102-396 237-511 (524)
15 KOG0295 WD40 repeat-containing 100.0 1.6E-28 3.5E-33 230.5 23.3 237 94-373 103-372 (406)
16 KOG0284 Polyadenylation factor 100.0 3.5E-29 7.5E-34 238.0 17.3 222 102-365 98-337 (464)
17 KOG0285 Pleiotropic regulator 100.0 2.9E-28 6.3E-33 228.0 23.2 232 95-371 147-395 (460)
18 KOG0276 Vesicle coat complex C 100.0 2.7E-27 5.9E-32 235.7 23.7 264 97-402 11-293 (794)
19 KOG0281 Beta-TrCP (transducin 100.0 1.2E-28 2.7E-33 229.5 13.2 245 79-367 217-479 (499)
20 KOG0266 WD40 repeat-containing 100.0 9.1E-27 2E-31 244.5 28.7 242 96-402 155-403 (456)
21 KOG0264 Nucleosome remodeling 100.0 2.5E-27 5.5E-32 229.0 22.3 235 89-371 114-353 (422)
22 KOG0273 Beta-transducin family 100.0 1E-26 2.2E-31 225.1 25.6 233 95-365 272-523 (524)
23 KOG0266 WD40 repeat-containing 100.0 1.7E-26 3.7E-31 242.4 28.9 234 96-397 200-441 (456)
24 KOG0295 WD40 repeat-containing 100.0 2.2E-27 4.7E-32 223.0 19.3 233 95-364 146-405 (406)
25 KOG0291 WD40-repeat-containing 100.0 3.7E-26 8E-31 232.2 29.2 269 102-415 267-557 (893)
26 KOG0284 Polyadenylation factor 100.0 2.1E-28 4.5E-33 232.8 12.1 229 94-365 133-380 (464)
27 PTZ00421 coronin; Provisional 100.0 6.3E-26 1.4E-30 237.4 31.1 214 95-369 71-294 (493)
28 KOG0282 mRNA splicing factor [ 100.0 9.1E-28 2E-32 233.2 15.3 230 92-363 207-503 (503)
29 KOG0316 Conserved WD40 repeat- 100.0 7.2E-26 1.6E-30 201.0 25.4 235 92-371 10-263 (307)
30 KOG0291 WD40-repeat-containing 99.9 7.8E-26 1.7E-30 229.9 27.8 209 92-369 343-554 (893)
31 KOG0281 Beta-TrCP (transducin 99.9 4.8E-28 1.1E-32 225.6 10.5 220 100-368 197-431 (499)
32 KOG0283 WD40 repeat-containing 99.9 2.6E-26 5.7E-31 237.6 22.6 263 97-402 265-570 (712)
33 KOG0265 U5 snRNP-specific prot 99.9 1.1E-25 2.3E-30 206.8 23.3 206 92-366 40-247 (338)
34 KOG0268 Sof1-like rRNA process 99.9 2.1E-27 4.5E-32 222.8 12.2 286 86-415 53-352 (433)
35 KOG0319 WD40-repeat-containing 99.9 3.5E-26 7.6E-31 232.3 20.6 230 94-366 360-620 (775)
36 PLN00181 protein SPA1-RELATED; 99.9 1.7E-24 3.6E-29 243.8 34.9 270 96-402 480-787 (793)
37 PTZ00420 coronin; Provisional 99.9 1.5E-24 3.3E-29 228.0 31.9 220 88-368 63-296 (568)
38 KOG0319 WD40-repeat-containing 99.9 3.3E-25 7.1E-30 225.3 24.6 271 95-402 319-613 (775)
39 KOG0645 WD40 repeat protein [G 99.9 7.1E-25 1.5E-29 198.7 24.0 222 94-365 56-311 (312)
40 cd00200 WD40 WD40 domain, foun 99.9 3.4E-24 7.3E-29 210.1 30.6 262 95-400 5-283 (289)
41 KOG0292 Vesicle coat complex C 99.9 1.8E-25 3.8E-30 230.5 21.8 232 102-372 11-287 (1202)
42 KOG0276 Vesicle coat complex C 99.9 2.4E-25 5.2E-30 222.0 21.9 231 92-361 47-295 (794)
43 KOG0318 WD40 repeat stress pro 99.9 2.1E-24 4.6E-29 211.6 27.9 250 97-403 188-555 (603)
44 KOG0277 Peroxisomal targeting 99.9 4.4E-26 9.6E-31 204.6 14.1 209 92-364 97-308 (311)
45 KOG0313 Microtubule binding pr 99.9 4.8E-25 1E-29 208.3 21.6 242 88-368 94-379 (423)
46 KOG0264 Nucleosome remodeling 99.9 6.1E-25 1.3E-29 212.6 21.2 229 94-365 172-404 (422)
47 KOG0292 Vesicle coat complex C 99.9 7.8E-25 1.7E-29 225.7 23.0 236 93-365 45-321 (1202)
48 KOG0265 U5 snRNP-specific prot 99.9 1.2E-24 2.5E-29 200.0 21.6 227 95-364 86-337 (338)
49 KOG1274 WD40 repeat protein [G 99.9 2.4E-23 5.2E-28 216.5 30.9 265 95-405 9-297 (933)
50 KOG0305 Anaphase promoting com 99.9 4.6E-24 1E-28 215.7 24.4 227 97-366 215-462 (484)
51 KOG0302 Ribosome Assembly prot 99.9 1.3E-24 2.8E-29 205.2 18.7 236 89-366 140-379 (440)
52 KOG0310 Conserved WD40 repeat- 99.9 3.5E-24 7.6E-29 208.7 21.9 233 102-402 70-303 (487)
53 KOG0318 WD40 repeat stress pro 99.9 4.3E-23 9.3E-28 202.4 29.2 255 92-372 52-357 (603)
54 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-22 2.3E-27 188.9 29.8 246 100-388 14-285 (311)
55 KOG0274 Cdc4 and related F-box 99.9 6.1E-24 1.3E-28 222.8 24.4 229 95-372 245-489 (537)
56 KOG0285 Pleiotropic regulator 99.9 1.7E-24 3.7E-29 202.8 17.9 196 170-398 143-339 (460)
57 KOG0296 Angio-associated migra 99.9 2.7E-23 5.9E-28 195.7 25.6 252 91-397 56-387 (399)
58 KOG0275 Conserved WD40 repeat- 99.9 7.6E-25 1.6E-29 202.5 14.6 231 105-395 218-454 (508)
59 KOG0315 G-protein beta subunit 99.9 3.7E-23 8.1E-28 185.3 23.4 218 91-344 75-309 (311)
60 KOG0313 Microtubule binding pr 99.9 7.7E-24 1.7E-28 200.2 19.7 226 95-365 189-418 (423)
61 KOG0296 Angio-associated migra 99.9 3E-23 6.6E-28 195.3 22.5 243 87-365 94-398 (399)
62 cd00200 WD40 WD40 domain, foun 99.9 1.8E-22 3.8E-27 197.9 28.6 228 93-363 45-289 (289)
63 KOG0294 WD40 repeat-containing 99.9 8.8E-23 1.9E-27 188.8 23.3 206 91-366 35-282 (362)
64 PTZ00421 coronin; Provisional 99.9 3.1E-22 6.7E-27 209.7 30.1 208 123-367 33-247 (493)
65 KOG0640 mRNA cleavage stimulat 99.9 2.2E-23 4.8E-28 192.0 18.5 234 92-374 105-344 (430)
66 PTZ00420 coronin; Provisional 99.9 3.9E-22 8.5E-27 209.9 30.2 188 128-366 50-249 (568)
67 KOG0269 WD40 repeat-containing 99.9 5.3E-24 1.2E-28 217.5 15.5 200 105-367 92-298 (839)
68 PLN00181 protein SPA1-RELATED; 99.9 2.7E-22 5.9E-27 225.9 30.4 231 102-364 534-792 (793)
69 KOG0308 Conserved WD40 repeat- 99.9 2.5E-23 5.4E-28 208.8 19.2 220 123-367 38-287 (735)
70 KOG0641 WD40 repeat protein [G 99.9 1.6E-21 3.4E-26 172.3 28.1 238 88-365 75-349 (350)
71 KOG0278 Serine/threonine kinas 99.9 2.8E-23 6E-28 186.1 16.8 272 93-409 8-298 (334)
72 KOG0643 Translation initiation 99.9 1.1E-22 2.4E-27 184.0 20.7 250 70-366 23-318 (327)
73 KOG0293 WD40 repeat-containing 99.9 2.9E-23 6.2E-28 198.0 17.8 207 94-365 219-513 (519)
74 KOG0772 Uncharacterized conser 99.9 2E-22 4.3E-27 197.2 24.0 256 92-401 160-432 (641)
75 KOG0643 Translation initiation 99.9 3.4E-22 7.3E-27 181.0 23.5 214 93-374 4-229 (327)
76 KOG0300 WD40 repeat-containing 99.9 6.3E-23 1.4E-27 189.5 19.2 252 89-388 180-454 (481)
77 KOG0267 Microtubule severing p 99.9 3.1E-24 6.8E-29 217.5 10.0 232 95-396 24-256 (825)
78 KOG0647 mRNA export protein (c 99.9 3.7E-22 8E-27 183.7 22.0 230 102-395 29-310 (347)
79 KOG0278 Serine/threonine kinas 99.9 3.7E-23 8E-28 185.3 14.9 232 91-367 51-299 (334)
80 KOG1407 WD40 repeat protein [F 99.9 2.6E-22 5.6E-27 181.2 19.4 210 95-370 16-266 (313)
81 KOG0274 Cdc4 and related F-box 99.9 3.5E-22 7.6E-27 209.5 23.3 230 96-375 204-451 (537)
82 KOG0288 WD40 repeat protein Ti 99.9 2.7E-23 5.9E-28 198.4 13.3 253 95-394 171-447 (459)
83 KOG0306 WD40-repeat-containing 99.9 5.7E-22 1.2E-26 201.9 23.7 181 154-366 470-665 (888)
84 KOG0310 Conserved WD40 repeat- 99.9 3.5E-22 7.5E-27 194.9 21.1 206 92-364 103-308 (487)
85 KOG1332 Vesicle coat complex C 99.9 1.2E-22 2.6E-27 181.7 16.0 246 96-402 8-280 (299)
86 KOG1036 Mitotic spindle checkp 99.9 1.4E-21 3.1E-26 180.6 23.3 237 102-397 15-293 (323)
87 KOG0300 WD40 repeat-containing 99.9 1.7E-22 3.7E-27 186.6 17.1 210 95-367 144-388 (481)
88 KOG0301 Phospholipase A2-activ 99.9 4.5E-22 9.8E-27 201.3 21.3 223 94-365 52-288 (745)
89 KOG0646 WD40 repeat protein [G 99.9 9.8E-22 2.1E-26 190.7 21.7 231 95-372 77-314 (476)
90 KOG1332 Vesicle coat complex C 99.9 9.4E-22 2E-26 175.9 18.3 223 91-365 48-286 (299)
91 KOG0289 mRNA splicing factor [ 99.9 2.3E-21 4.9E-26 186.3 21.0 197 105-369 224-423 (506)
92 KOG0973 Histone transcription 99.9 2.9E-21 6.3E-26 205.2 24.0 273 95-402 8-349 (942)
93 KOG0306 WD40-repeat-containing 99.9 6.5E-21 1.4E-25 194.3 25.4 276 91-406 365-662 (888)
94 KOG0289 mRNA splicing factor [ 99.9 5.6E-21 1.2E-25 183.6 23.0 210 92-370 254-467 (506)
95 KOG0772 Uncharacterized conser 99.9 6.4E-22 1.4E-26 193.7 16.8 211 95-364 264-486 (641)
96 KOG0302 Ribosome Assembly prot 99.9 3E-21 6.5E-26 182.5 20.6 226 88-362 200-436 (440)
97 KOG0316 Conserved WD40 repeat- 99.9 1.4E-21 3.1E-26 173.8 17.2 213 155-402 34-251 (307)
98 KOG0282 mRNA splicing factor [ 99.9 9.6E-22 2.1E-26 191.5 17.6 205 154-374 231-471 (503)
99 KOG0283 WD40 repeat-containing 99.9 1.6E-21 3.4E-26 202.3 20.1 206 92-368 362-579 (712)
100 KOG2445 Nuclear pore complex c 99.9 8.4E-21 1.8E-25 175.2 22.5 254 96-365 10-318 (361)
101 KOG1407 WD40 repeat protein [F 99.9 1.3E-20 2.7E-25 170.3 22.4 219 95-356 60-293 (313)
102 KOG4283 Transcription-coupled 99.9 4.1E-21 8.8E-26 176.1 19.5 234 96-369 40-280 (397)
103 KOG0269 WD40 repeat-containing 99.9 6E-22 1.3E-26 202.5 15.2 213 88-365 122-340 (839)
104 KOG0973 Histone transcription 99.9 3.7E-21 8.1E-26 204.3 21.8 231 89-368 58-358 (942)
105 KOG0640 mRNA cleavage stimulat 99.9 2.8E-21 6.1E-26 178.2 17.9 218 88-364 161-425 (430)
106 KOG0275 Conserved WD40 repeat- 99.9 1E-21 2.2E-26 181.9 14.8 234 70-372 234-474 (508)
107 KOG0641 WD40 repeat protein [G 99.9 3.1E-20 6.7E-25 164.2 23.4 225 100-366 32-304 (350)
108 KOG0299 U3 snoRNP-associated p 99.9 1.1E-20 2.3E-25 183.2 20.9 237 97-396 200-443 (479)
109 KOG0268 Sof1-like rRNA process 99.9 2.7E-21 5.7E-26 182.0 15.3 239 82-365 92-345 (433)
110 KOG0305 Anaphase promoting com 99.9 2.5E-20 5.4E-25 188.8 21.6 211 123-395 189-404 (484)
111 KOG2055 WD40 repeat protein [G 99.9 9.2E-20 2E-24 176.7 24.2 296 178-555 213-513 (514)
112 KOG0301 Phospholipase A2-activ 99.9 2.4E-20 5.1E-25 188.9 21.0 254 95-404 10-284 (745)
113 KOG0303 Actin-binding protein 99.9 1.9E-20 4E-25 178.1 18.9 253 95-422 77-335 (472)
114 KOG0288 WD40 repeat protein Ti 99.9 1.9E-20 4.1E-25 179.1 18.0 220 97-363 217-459 (459)
115 KOG0270 WD40 repeat-containing 99.8 9.3E-20 2E-24 176.0 19.2 222 105-366 178-405 (463)
116 KOG0267 Microtubule severing p 99.8 3.4E-21 7.3E-26 195.7 9.7 195 94-357 65-260 (825)
117 KOG0270 WD40 repeat-containing 99.8 7.4E-20 1.6E-24 176.7 17.4 209 97-368 241-452 (463)
118 KOG2096 WD40 repeat protein [G 99.8 4.8E-19 1E-23 164.2 22.0 268 95-395 82-390 (420)
119 KOG1007 WD repeat protein TSSC 99.8 3.1E-19 6.7E-24 163.4 19.0 220 97-364 121-360 (370)
120 KOG0299 U3 snoRNP-associated p 99.8 1.7E-19 3.7E-24 174.9 18.1 223 92-368 135-359 (479)
121 KOG0639 Transducin-like enhanc 99.8 1.7E-19 3.7E-24 176.1 17.8 258 94-398 414-694 (705)
122 KOG4328 WD40 protein [Function 99.8 5.5E-19 1.2E-23 171.2 20.4 214 97-365 184-399 (498)
123 KOG1446 Histone H3 (Lys4) meth 99.8 3.7E-18 8E-23 158.9 23.6 205 90-365 91-303 (311)
124 KOG0293 WD40 repeat-containing 99.8 2E-18 4.2E-23 165.2 22.3 191 174-396 220-413 (519)
125 KOG0650 WD40 repeat nucleolar 99.8 7.5E-19 1.6E-23 175.2 17.5 244 92-362 393-732 (733)
126 KOG2919 Guanine nucleotide-bin 99.8 1.3E-18 2.8E-23 161.7 17.7 226 103-366 52-328 (406)
127 KOG1408 WD40 repeat protein [F 99.8 2E-18 4.3E-23 175.0 20.0 227 103-366 462-714 (1080)
128 KOG0308 Conserved WD40 repeat- 99.8 5.5E-19 1.2E-23 177.8 15.1 233 90-365 64-327 (735)
129 KOG0321 WD40 repeat-containing 99.8 5.6E-18 1.2E-22 170.3 20.4 247 90-370 91-396 (720)
130 KOG4283 Transcription-coupled 99.8 1.4E-17 3.1E-22 153.0 20.8 166 96-310 98-279 (397)
131 KOG1273 WD40 repeat protein [G 99.8 1.6E-17 3.4E-22 154.1 20.8 227 104-397 27-268 (405)
132 KOG0307 Vesicle coat complex C 99.8 5.4E-19 1.2E-23 188.8 12.9 215 103-374 67-293 (1049)
133 KOG2096 WD40 repeat protein [G 99.8 6.6E-18 1.4E-22 156.7 17.3 172 174-365 82-308 (420)
134 KOG0307 Vesicle coat complex C 99.8 6.6E-19 1.4E-23 188.2 11.7 254 51-369 65-331 (1049)
135 KOG0294 WD40 repeat-containing 99.8 4.8E-17 1E-21 151.1 21.5 203 124-374 3-206 (362)
136 KOG1408 WD40 repeat protein [F 99.8 3.4E-17 7.4E-22 166.1 21.6 236 102-373 327-679 (1080)
137 KOG2055 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 157.0 22.1 266 102-404 215-508 (514)
138 KOG1063 RNA polymerase II elon 99.8 1.3E-16 2.9E-21 161.9 25.1 240 95-367 263-650 (764)
139 KOG0647 mRNA export protein (c 99.8 4.4E-17 9.5E-22 150.5 19.7 244 44-354 21-312 (347)
140 KOG0321 WD40 repeat-containing 99.8 2.7E-17 5.8E-22 165.5 19.7 238 123-402 65-341 (720)
141 KOG0290 Conserved WD40 repeat- 99.8 2.6E-17 5.7E-22 151.1 17.2 221 96-366 93-319 (364)
142 KOG2048 WD40 repeat protein [G 99.8 2.9E-16 6.4E-21 159.2 26.3 236 102-399 27-266 (691)
143 KOG1034 Transcriptional repres 99.8 1.6E-17 3.5E-22 154.9 15.8 214 95-364 131-382 (385)
144 KOG1188 WD40 repeat protein [G 99.8 4.2E-17 9.2E-22 153.0 18.6 198 123-370 41-247 (376)
145 KOG0642 Cell-cycle nuclear pro 99.8 2.2E-17 4.7E-22 164.2 17.0 225 94-372 289-568 (577)
146 KOG1539 WD repeat protein [Gen 99.8 4.5E-17 9.8E-22 168.4 19.6 196 102-364 450-647 (910)
147 KOG1539 WD repeat protein [Gen 99.8 2.3E-16 5E-21 163.2 24.4 179 183-395 452-634 (910)
148 KOG0303 Actin-binding protein 99.7 5.8E-17 1.2E-21 154.5 17.5 167 175-366 78-250 (472)
149 KOG4378 Nuclear protein COP1 [ 99.7 3.2E-17 6.9E-22 160.2 15.1 209 88-367 70-282 (673)
150 KOG1007 WD repeat protein TSSC 99.7 8.6E-17 1.9E-21 147.5 16.5 222 96-366 59-290 (370)
151 KOG1445 Tumor-specific antigen 99.7 3.1E-17 6.8E-22 164.4 14.4 212 98-364 625-843 (1012)
152 KOG1034 Transcriptional repres 99.7 1.3E-16 2.9E-21 148.8 15.6 218 98-368 88-340 (385)
153 KOG1009 Chromatin assembly com 99.7 1E-15 2.2E-20 146.8 21.9 168 96-299 9-187 (434)
154 KOG0646 WD40 repeat protein [G 99.7 5.7E-16 1.2E-20 150.9 20.4 249 124-404 9-303 (476)
155 TIGR03866 PQQ_ABC_repeats PQQ- 99.7 1E-14 2.2E-19 145.3 29.7 224 104-372 34-286 (300)
156 KOG0639 Transducin-like enhanc 99.7 7E-17 1.5E-21 158.0 13.3 204 90-364 499-703 (705)
157 KOG2106 Uncharacterized conser 99.7 1.7E-15 3.8E-20 148.6 22.1 221 96-364 284-520 (626)
158 KOG4378 Nuclear protein COP1 [ 99.7 3.9E-16 8.5E-21 152.7 16.9 238 130-402 10-274 (673)
159 KOG2106 Uncharacterized conser 99.7 7.6E-15 1.7E-19 144.1 25.5 244 93-405 239-518 (626)
160 KOG2919 Guanine nucleotide-bin 99.7 1.4E-15 3.1E-20 141.7 19.3 228 97-356 101-361 (406)
161 KOG1538 Uncharacterized conser 99.7 3.9E-16 8.5E-21 157.4 16.8 235 102-409 14-253 (1081)
162 KOG2048 WD40 repeat protein [G 99.7 3E-15 6.6E-20 152.0 23.2 206 95-368 64-278 (691)
163 KOG1274 WD40 repeat protein [G 99.7 3.2E-15 7E-20 156.6 23.5 210 123-362 67-297 (933)
164 KOG1587 Cytoplasmic dynein int 99.7 1.8E-15 3.9E-20 157.9 21.5 249 102-402 244-510 (555)
165 KOG1310 WD40 repeat protein [G 99.7 5.8E-16 1.3E-20 153.2 16.6 231 95-367 46-305 (758)
166 KOG4328 WD40 protein [Function 99.7 1.4E-15 3E-20 147.9 18.9 224 86-369 221-454 (498)
167 KOG1036 Mitotic spindle checkp 99.7 4.7E-15 1E-19 137.7 19.9 221 91-355 46-294 (323)
168 KOG0290 Conserved WD40 repeat- 99.7 4.4E-15 9.6E-20 136.6 17.8 199 101-355 151-356 (364)
169 KOG1523 Actin-related protein 99.7 9.2E-15 2E-19 136.3 20.0 216 102-367 12-238 (361)
170 KOG1063 RNA polymerase II elon 99.7 2.6E-15 5.7E-20 152.6 17.1 225 89-365 515-763 (764)
171 KOG0771 Prolactin regulatory e 99.7 2.6E-15 5.5E-20 145.1 16.0 196 105-365 149-354 (398)
172 KOG1445 Tumor-specific antigen 99.7 1.7E-15 3.8E-20 152.0 14.8 165 179-366 628-799 (1012)
173 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 6.1E-14 1.3E-18 139.7 25.5 186 123-370 2-192 (300)
174 KOG4227 WD40 repeat protein [G 99.6 1.2E-14 2.6E-19 138.5 17.9 223 95-364 52-386 (609)
175 KOG0322 G-protein beta subunit 99.6 8.1E-15 1.8E-19 133.1 14.9 162 179-364 151-322 (323)
176 KOG2445 Nuclear pore complex c 99.6 5.6E-14 1.2E-18 130.4 19.3 195 154-366 29-257 (361)
177 KOG0644 Uncharacterized conser 99.6 1.2E-15 2.6E-20 157.7 8.7 226 95-395 186-455 (1113)
178 COG2319 FOG: WD40 repeat [Gene 99.6 1.3E-12 2.9E-17 135.0 31.0 235 94-371 60-320 (466)
179 KOG1273 WD40 repeat protein [G 99.6 3.1E-14 6.7E-19 132.4 15.7 186 183-398 27-216 (405)
180 KOG1524 WD40 repeat-containing 99.6 4E-14 8.8E-19 140.0 17.3 195 156-398 82-276 (737)
181 KOG1009 Chromatin assembly com 99.6 1.3E-14 2.9E-19 139.2 12.3 164 179-367 14-197 (434)
182 KOG1188 WD40 repeat protein [G 99.6 5.4E-14 1.2E-18 132.3 14.3 149 194-367 41-198 (376)
183 KOG1524 WD40 repeat-containing 99.6 4.8E-14 1E-18 139.5 14.5 183 96-363 101-284 (737)
184 KOG2110 Uncharacterized conser 99.6 3E-12 6.6E-17 121.9 25.9 202 124-365 99-330 (391)
185 KOG0650 WD40 repeat nucleolar 99.6 6.6E-13 1.4E-17 133.2 22.3 202 170-403 392-632 (733)
186 KOG0649 WD40 repeat protein [G 99.6 2.6E-13 5.6E-18 122.1 17.5 217 103-369 13-239 (325)
187 KOG1517 Guanine nucleotide bin 99.5 5.1E-13 1.1E-17 141.8 21.7 226 103-367 1067-1335(1387)
188 KOG1517 Guanine nucleotide bin 99.5 2.7E-13 5.8E-18 143.9 19.6 222 123-366 1124-1382(1387)
189 COG2319 FOG: WD40 repeat [Gene 99.5 4.2E-12 9.1E-17 131.3 28.7 210 90-368 146-362 (466)
190 KOG1538 Uncharacterized conser 99.5 4.6E-13 9.9E-18 135.6 19.9 235 92-367 46-295 (1081)
191 KOG1310 WD40 repeat protein [G 99.5 3.2E-14 7E-19 141.0 10.8 173 173-364 45-230 (758)
192 KOG0642 Cell-cycle nuclear pro 99.5 2.3E-13 5E-18 135.9 14.8 266 123-404 243-557 (577)
193 KOG2394 WD40 protein DMR-N9 [G 99.5 3.3E-13 7.2E-18 133.8 15.7 167 179-370 220-457 (636)
194 KOG3881 Uncharacterized conser 99.5 2E-12 4.4E-17 123.9 18.9 196 123-370 116-325 (412)
195 KOG1272 WD40-repeat-containing 99.5 2.6E-13 5.7E-18 132.3 12.8 214 105-363 134-360 (545)
196 PF08662 eIF2A: Eukaryotic tra 99.5 5.2E-12 1.1E-16 116.9 20.7 152 183-369 9-183 (194)
197 KOG1587 Cytoplasmic dynein int 99.5 2E-12 4.4E-17 135.3 19.6 225 96-365 288-516 (555)
198 KOG2110 Uncharacterized conser 99.5 8.1E-12 1.8E-16 119.1 21.8 183 124-368 58-251 (391)
199 KOG0649 WD40 repeat protein [G 99.5 2.3E-11 4.9E-16 109.7 22.6 214 88-366 51-275 (325)
200 PRK01742 tolB translocation pr 99.5 6E-12 1.3E-16 131.9 22.4 195 96-364 200-400 (429)
201 KOG2139 WD40 repeat protein [G 99.5 5.7E-12 1.2E-16 119.6 19.1 199 102-364 100-308 (445)
202 KOG4227 WD40 repeat protein [G 99.4 1.5E-12 3.3E-17 124.2 14.1 173 170-365 48-225 (609)
203 KOG1523 Actin-related protein 99.4 2.7E-12 5.9E-17 120.0 14.8 171 178-372 10-183 (361)
204 KOG0322 G-protein beta subunit 99.4 1.2E-12 2.6E-17 119.2 11.8 156 123-306 166-322 (323)
205 KOG0771 Prolactin regulatory e 99.4 2.2E-12 4.8E-17 125.0 14.4 163 183-371 148-317 (398)
206 KOG1963 WD40 repeat protein [G 99.4 2.8E-11 6.2E-16 127.1 23.5 205 102-368 18-284 (792)
207 PRK01742 tolB translocation pr 99.4 2.2E-11 4.8E-16 127.7 23.0 204 131-401 183-394 (429)
208 KOG2111 Uncharacterized conser 99.4 3.3E-10 7.2E-15 106.2 26.7 225 88-364 83-321 (346)
209 PF08662 eIF2A: Eukaryotic tra 99.4 2.8E-11 6E-16 112.0 19.6 109 177-306 58-178 (194)
210 KOG1334 WD40 repeat protein [G 99.4 1.1E-11 2.4E-16 121.9 17.1 252 95-372 138-431 (559)
211 KOG2394 WD40 protein DMR-N9 [G 99.4 6.6E-12 1.4E-16 124.8 14.7 152 102-287 221-384 (636)
212 PRK11028 6-phosphogluconolacto 99.4 7.6E-10 1.6E-14 112.2 30.4 202 105-366 39-259 (330)
213 KOG0644 Uncharacterized conser 99.4 6.4E-13 1.4E-17 137.8 6.2 116 172-307 184-300 (1113)
214 KOG2321 WD40 repeat protein [G 99.4 5.1E-11 1.1E-15 119.4 19.3 232 94-364 46-342 (703)
215 KOG0974 WD-repeat protein WDR6 99.4 2.2E-11 4.8E-16 130.0 17.4 193 123-371 100-294 (967)
216 KOG1240 Protein kinase contain 99.4 7.8E-11 1.7E-15 127.5 21.4 224 92-368 1041-1276(1431)
217 KOG2111 Uncharacterized conser 99.3 2.9E-10 6.2E-15 106.7 22.0 178 132-367 75-258 (346)
218 PRK11028 6-phosphogluconolacto 99.3 9.5E-10 2.1E-14 111.5 28.0 204 105-365 84-304 (330)
219 PRK02889 tolB translocation pr 99.3 2.5E-10 5.4E-15 119.6 24.3 188 175-398 192-390 (427)
220 KOG1963 WD40 repeat protein [G 99.3 2.5E-10 5.3E-15 120.2 23.3 237 94-368 52-325 (792)
221 PRK03629 tolB translocation pr 99.3 5.2E-10 1.1E-14 117.1 25.8 192 102-366 200-407 (429)
222 PRK02889 tolB translocation pr 99.3 4.1E-10 8.9E-15 118.0 24.4 189 97-357 193-392 (427)
223 PRK05137 tolB translocation pr 99.3 6.7E-10 1.5E-14 116.8 26.0 198 96-367 198-414 (435)
224 KOG3881 Uncharacterized conser 99.3 1.4E-10 3E-15 111.5 17.9 166 105-308 153-321 (412)
225 KOG0280 Uncharacterized conser 99.3 1.1E-10 2.4E-15 108.2 16.6 222 92-370 63-289 (339)
226 PRK04922 tolB translocation pr 99.3 7.1E-10 1.5E-14 116.5 24.9 196 97-366 201-412 (433)
227 KOG0309 Conserved WD40 repeat- 99.3 4.7E-11 1E-15 122.7 14.5 211 97-370 22-237 (1081)
228 KOG1272 WD40-repeat-containing 99.3 1.2E-11 2.6E-16 120.9 9.3 161 182-368 132-326 (545)
229 PRK05137 tolB translocation pr 99.3 1.4E-09 3.1E-14 114.4 25.5 185 175-397 198-395 (435)
230 KOG2139 WD40 repeat protein [G 99.3 2.2E-10 4.9E-15 108.9 16.7 181 183-395 102-297 (445)
231 KOG4547 WD40 repeat-containing 99.3 4.8E-10 1E-14 113.4 20.1 205 123-366 6-221 (541)
232 PRK04922 tolB translocation pr 99.3 1.6E-09 3.5E-14 113.9 24.6 185 175-397 200-397 (433)
233 PRK03629 tolB translocation pr 99.2 4.4E-09 9.5E-14 110.2 26.9 187 177-399 197-394 (429)
234 KOG0280 Uncharacterized conser 99.2 1.1E-09 2.4E-14 101.7 15.0 202 105-364 126-332 (339)
235 TIGR02800 propeller_TolB tol-p 99.1 1.3E-08 2.8E-13 106.7 24.7 187 97-357 187-386 (417)
236 PRK01029 tolB translocation pr 99.1 1.7E-08 3.8E-13 105.3 25.3 204 104-370 188-408 (428)
237 TIGR02800 propeller_TolB tol-p 99.1 2.1E-08 4.6E-13 105.1 25.3 185 176-398 187-384 (417)
238 KOG1354 Serine/threonine prote 99.1 1.5E-09 3.2E-14 102.8 13.6 233 100-365 25-301 (433)
239 KOG4497 Uncharacterized conser 99.1 1.4E-08 3E-13 95.8 19.2 221 103-360 94-427 (447)
240 KOG4497 Uncharacterized conser 99.1 1.9E-09 4.2E-14 101.4 13.3 184 102-365 51-240 (447)
241 KOG0309 Conserved WD40 repeat- 99.1 7.1E-10 1.5E-14 114.2 11.4 222 91-366 106-340 (1081)
242 PF02239 Cytochrom_D1: Cytochr 99.1 1.1E-07 2.4E-12 96.9 27.4 245 105-401 41-338 (369)
243 KOG1409 Uncharacterized conser 99.0 1.4E-08 3E-13 96.4 17.6 104 196-309 168-272 (404)
244 KOG1064 RAVE (regulator of V-A 99.0 1.6E-09 3.5E-14 121.3 12.2 188 102-368 2210-2401(2439)
245 PRK00178 tolB translocation pr 99.0 1E-07 2.2E-12 100.3 25.4 195 97-365 196-406 (430)
246 KOG2315 Predicted translation 99.0 4.2E-08 9E-13 98.9 20.0 132 204-370 252-395 (566)
247 KOG0974 WD-repeat protein WDR6 99.0 4E-09 8.6E-14 113.1 13.4 142 123-308 146-289 (967)
248 KOG1240 Protein kinase contain 99.0 3.5E-08 7.5E-13 107.5 20.4 203 170-394 1040-1257(1431)
249 KOG1409 Uncharacterized conser 99.0 1.5E-08 3.2E-13 96.2 15.4 214 95-370 20-275 (404)
250 PRK04792 tolB translocation pr 99.0 1.3E-07 2.8E-12 99.6 24.3 191 102-365 219-425 (448)
251 PRK00178 tolB translocation pr 99.0 2.7E-07 5.8E-12 97.2 26.8 186 175-398 195-393 (430)
252 KOG1354 Serine/threonine prote 99.0 2E-08 4.3E-13 95.3 15.8 228 102-368 86-362 (433)
253 PF02239 Cytochrom_D1: Cytochr 98.9 4.4E-07 9.5E-12 92.6 25.1 192 123-372 6-209 (369)
254 PRK04792 tolB translocation pr 98.9 4E-07 8.6E-12 95.9 25.5 183 177-397 216-411 (448)
255 KOG2321 WD40 repeat protein [G 98.9 2E-08 4.4E-13 101.1 14.5 172 97-308 172-344 (703)
256 PF10282 Lactonase: Lactonase, 98.9 7.9E-06 1.7E-10 83.2 33.5 223 104-372 90-331 (345)
257 KOG4714 Nucleoporin [Nuclear s 98.9 1.8E-08 4E-13 92.1 12.4 149 193-368 101-257 (319)
258 KOG1334 WD40 repeat protein [G 98.9 7.9E-09 1.7E-13 102.1 10.6 214 96-365 229-466 (559)
259 KOG2695 WD40 repeat protein [G 98.8 1.4E-08 3.1E-13 96.4 8.7 160 184-372 216-383 (425)
260 PF10282 Lactonase: Lactonase, 98.8 1.3E-05 2.8E-10 81.7 31.0 236 105-398 41-311 (345)
261 PRK01029 tolB translocation pr 98.8 2.1E-06 4.6E-11 89.8 24.5 184 183-396 188-388 (428)
262 KOG2315 Predicted translation 98.8 3.9E-07 8.6E-12 92.0 17.4 132 177-347 269-412 (566)
263 KOG4547 WD40 repeat-containing 98.7 1.5E-06 3.2E-11 88.5 20.3 145 123-308 71-221 (541)
264 KOG3914 WD repeat protein WDR4 98.7 2.5E-07 5.5E-12 89.9 13.5 155 191-370 72-228 (390)
265 COG5170 CDC55 Serine/threonine 98.7 2.2E-07 4.7E-12 87.2 12.6 270 102-405 28-364 (460)
266 PF15492 Nbas_N: Neuroblastoma 98.7 1E-05 2.3E-10 75.9 23.5 186 183-371 47-265 (282)
267 KOG4532 WD40-like repeat conta 98.7 2.4E-06 5.3E-11 78.8 18.9 193 123-368 85-285 (344)
268 PLN02919 haloacid dehalogenase 98.7 5.6E-06 1.2E-10 95.4 26.4 165 182-369 685-892 (1057)
269 KOG4190 Uncharacterized conser 98.6 1.1E-07 2.3E-12 95.4 9.2 175 173-371 730-912 (1034)
270 KOG3914 WD repeat protein WDR4 98.6 4.5E-07 9.7E-12 88.2 13.2 154 105-308 67-224 (390)
271 KOG2041 WD40 repeat protein [G 98.6 5E-07 1.1E-11 93.3 14.0 216 103-364 17-246 (1189)
272 COG2706 3-carboxymuconate cycl 98.6 0.00014 3.1E-09 70.4 28.8 213 96-365 36-274 (346)
273 KOG1912 WD40 repeat protein [G 98.6 4E-06 8.6E-11 87.7 18.8 153 105-305 20-184 (1062)
274 COG2706 3-carboxymuconate cycl 98.6 7.7E-05 1.7E-09 72.3 25.9 219 105-371 93-329 (346)
275 KOG2695 WD40 repeat protein [G 98.5 2.8E-07 6E-12 87.7 8.7 120 177-308 251-377 (425)
276 PRK04043 tolB translocation pr 98.5 2.4E-05 5.2E-10 81.4 23.9 190 102-365 189-400 (419)
277 PF00400 WD40: WD domain, G-be 98.5 3.9E-07 8.5E-12 60.2 6.7 38 326-363 2-39 (39)
278 KOG4714 Nucleoporin [Nuclear s 98.5 5.2E-07 1.1E-11 82.8 9.5 72 231-307 181-254 (319)
279 KOG1064 RAVE (regulator of V-A 98.5 5.7E-07 1.2E-11 101.6 11.5 162 177-372 2207-2373(2439)
280 COG4946 Uncharacterized protei 98.5 1.5E-05 3.3E-10 79.1 20.0 146 95-295 355-506 (668)
281 KOG1275 PAB-dependent poly(A) 98.5 3.2E-06 7E-11 90.0 15.6 183 123-364 148-341 (1118)
282 KOG4190 Uncharacterized conser 98.5 3E-07 6.4E-12 92.3 7.2 218 91-370 727-953 (1034)
283 KOG2314 Translation initiation 98.5 9.9E-06 2.1E-10 81.9 17.8 153 184-368 398-576 (698)
284 KOG2041 WD40 repeat protein [G 98.4 1.2E-06 2.6E-11 90.6 10.7 159 183-366 18-187 (1189)
285 COG5170 CDC55 Serine/threonine 98.4 3.2E-06 7E-11 79.5 12.7 223 103-364 88-366 (460)
286 PF15492 Nbas_N: Neuroblastoma 98.4 4.4E-05 9.6E-10 71.7 20.1 166 105-309 48-261 (282)
287 COG4946 Uncharacterized protei 98.4 5E-05 1.1E-09 75.6 21.0 146 175-354 356-507 (668)
288 COG5354 Uncharacterized protei 98.4 0.00015 3.3E-09 73.0 24.6 228 95-368 68-351 (561)
289 TIGR02658 TTQ_MADH_Hv methylam 98.4 0.00037 8E-09 69.9 27.8 220 108-382 53-348 (352)
290 PF00400 WD40: WD domain, G-be 98.4 8.5E-07 1.8E-11 58.6 5.8 38 268-305 2-39 (39)
291 PF04762 IKI3: IKI3 family; I 98.4 0.00011 2.5E-09 83.3 25.8 222 99-364 120-378 (928)
292 KOG0882 Cyclophilin-related pe 98.4 8.1E-06 1.8E-10 80.5 13.8 215 123-374 21-240 (558)
293 PF08450 SGL: SMP-30/Gluconola 98.3 0.0006 1.3E-08 65.8 26.5 201 105-371 4-218 (246)
294 KOG1832 HIV-1 Vpr-binding prot 98.3 1.2E-06 2.6E-11 92.6 7.8 195 95-371 1097-1297(1516)
295 KOG1008 Uncharacterized conser 98.3 5.3E-07 1.1E-11 92.4 5.0 191 123-365 71-275 (783)
296 KOG4532 WD40-like repeat conta 98.3 6.1E-05 1.3E-09 69.8 17.3 156 183-364 162-330 (344)
297 PLN02919 haloacid dehalogenase 98.3 0.00059 1.3E-08 79.1 29.4 226 105-370 572-838 (1057)
298 PRK04043 tolB translocation pr 98.3 0.00055 1.2E-08 71.3 26.5 178 183-398 191-387 (419)
299 COG5354 Uncharacterized protei 98.2 6.5E-05 1.4E-09 75.5 17.5 140 176-357 272-421 (561)
300 KOG2066 Vacuolar assembly/sort 98.2 2.9E-05 6.3E-10 82.0 14.1 170 183-396 43-222 (846)
301 KOG1832 HIV-1 Vpr-binding prot 98.2 2.5E-06 5.3E-11 90.4 6.0 188 175-399 1098-1287(1516)
302 PF04762 IKI3: IKI3 family; I 98.1 0.0006 1.3E-08 77.6 23.5 218 98-366 208-457 (928)
303 PF11768 DUF3312: Protein of u 98.1 0.00066 1.4E-08 70.2 21.1 74 176-266 257-331 (545)
304 KOG1912 WD40 repeat protein [G 98.0 9.3E-05 2E-09 77.8 14.5 155 183-364 19-185 (1062)
305 PF11768 DUF3312: Protein of u 98.0 0.00022 4.7E-09 73.7 16.9 113 232-367 208-331 (545)
306 KOG1645 RING-finger-containing 98.0 0.00015 3.3E-09 70.9 14.6 84 173-270 188-272 (463)
307 KOG1275 PAB-dependent poly(A) 98.0 4.2E-05 9.1E-10 81.8 11.4 141 123-306 188-341 (1118)
308 KOG2114 Vacuolar assembly/sort 98.0 0.001 2.2E-08 71.3 21.5 201 106-367 29-245 (933)
309 KOG0882 Cyclophilin-related pe 98.0 5.1E-05 1.1E-09 75.1 11.2 230 92-380 46-320 (558)
310 PF07433 DUF1513: Protein of u 97.9 0.0058 1.3E-07 59.4 23.7 206 104-372 8-254 (305)
311 PF13360 PQQ_2: PQQ-like domai 97.9 0.0049 1.1E-07 58.9 23.8 183 123-369 37-234 (238)
312 TIGR02658 TTQ_MADH_Hv methylam 97.9 0.017 3.7E-07 58.1 27.2 207 132-396 27-317 (352)
313 PF08450 SGL: SMP-30/Gluconola 97.9 0.013 2.7E-07 56.6 25.9 139 182-353 88-243 (246)
314 KOG2066 Vacuolar assembly/sort 97.9 0.0015 3.2E-08 69.6 19.9 142 123-308 84-234 (846)
315 KOG1920 IkappaB kinase complex 97.9 0.0019 4.2E-08 71.8 20.9 205 101-367 70-324 (1265)
316 KOG2314 Translation initiation 97.8 0.0019 4.1E-08 65.9 18.6 178 105-353 215-411 (698)
317 TIGR03300 assembly_YfgL outer 97.7 0.0056 1.2E-07 63.2 21.8 133 193-362 241-376 (377)
318 KOG1008 Uncharacterized conser 97.7 1.1E-05 2.5E-10 82.9 1.3 158 178-363 56-223 (783)
319 KOG3617 WD40 and TPR repeat-co 97.7 0.00075 1.6E-08 71.9 14.2 68 183-264 63-131 (1416)
320 KOG3617 WD40 and TPR repeat-co 97.7 0.0023 5E-08 68.3 17.2 68 105-211 64-131 (1416)
321 PRK02888 nitrous-oxide reducta 97.7 0.021 4.6E-07 60.8 24.4 103 258-366 298-405 (635)
322 PF13360 PQQ_2: PQQ-like domai 97.6 0.01 2.2E-07 56.7 19.6 179 130-368 1-194 (238)
323 KOG1920 IkappaB kinase complex 97.6 0.0072 1.6E-07 67.4 19.9 151 183-364 199-364 (1265)
324 PF07433 DUF1513: Protein of u 97.6 0.022 4.7E-07 55.5 21.1 182 106-358 56-278 (305)
325 TIGR03300 assembly_YfgL outer 97.5 0.017 3.6E-07 59.7 22.0 187 123-370 66-264 (377)
326 KOG1645 RING-finger-containing 97.5 0.00081 1.8E-08 66.0 11.0 84 220-310 184-269 (463)
327 PF06977 SdiA-regulated: SdiA- 97.5 0.06 1.3E-06 51.5 23.0 200 103-362 24-247 (248)
328 PF04053 Coatomer_WDAD: Coatom 97.5 0.017 3.7E-07 60.2 20.9 190 96-361 28-219 (443)
329 KOG2114 Vacuolar assembly/sort 97.4 0.0097 2.1E-07 64.1 17.8 180 191-395 33-231 (933)
330 PF08596 Lgl_C: Lethal giant l 97.4 0.017 3.7E-07 59.4 18.8 179 98-308 85-291 (395)
331 PF08553 VID27: VID27 cytoplas 97.4 0.0066 1.4E-07 66.8 16.5 140 200-365 501-647 (794)
332 PF08596 Lgl_C: Lethal giant l 97.3 0.052 1.1E-06 55.9 21.3 232 103-370 4-295 (395)
333 smart00320 WD40 WD40 repeats. 97.3 0.0008 1.7E-08 42.7 5.3 37 327-363 4-40 (40)
334 PF04841 Vps16_N: Vps16, N-ter 97.2 0.054 1.2E-06 56.4 21.2 158 179-367 81-248 (410)
335 PF03178 CPSF_A: CPSF A subuni 97.2 0.14 3.1E-06 51.4 23.9 192 123-362 43-262 (321)
336 COG0823 TolB Periplasmic compo 97.2 0.027 5.7E-07 58.6 18.4 154 183-367 196-360 (425)
337 PF08553 VID27: VID27 cytoplas 97.2 0.01 2.2E-07 65.4 15.9 100 194-307 543-647 (794)
338 KOG3621 WD40 repeat-containing 97.1 0.003 6.5E-08 66.5 10.4 111 183-308 39-155 (726)
339 smart00320 WD40 WD40 repeats. 97.0 0.0014 3.1E-08 41.5 4.8 38 268-305 3-40 (40)
340 PF03178 CPSF_A: CPSF A subuni 97.0 0.16 3.5E-06 51.1 21.7 147 193-365 42-202 (321)
341 KOG4640 Anaphase-promoting com 96.9 0.0046 9.9E-08 64.4 9.5 93 103-240 23-116 (665)
342 COG0823 TolB Periplasmic compo 96.9 0.041 8.9E-07 57.2 16.7 157 98-306 190-357 (425)
343 PRK11138 outer membrane biogen 96.9 0.16 3.5E-06 52.7 21.2 181 123-369 121-316 (394)
344 KOG3621 WD40 repeat-containing 96.9 0.007 1.5E-07 63.8 10.5 119 231-366 35-155 (726)
345 KOG4640 Anaphase-promoting com 96.7 0.008 1.7E-07 62.6 9.3 90 183-287 24-115 (665)
346 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.15 3.2E-06 41.7 14.7 89 194-302 16-109 (111)
347 PF06977 SdiA-regulated: SdiA- 96.7 0.35 7.5E-06 46.3 19.8 171 175-366 18-202 (248)
348 PRK11138 outer membrane biogen 96.7 0.12 2.5E-06 53.8 18.2 188 123-371 161-359 (394)
349 KOG2079 Vacuolar assembly/sort 96.5 0.012 2.6E-07 64.9 9.7 99 248-364 100-202 (1206)
350 PF00930 DPPIV_N: Dipeptidyl p 96.5 1.2 2.5E-05 45.5 24.5 250 102-401 44-350 (353)
351 KOG2395 Protein involved in va 96.5 0.065 1.4E-06 55.0 13.9 145 195-364 348-499 (644)
352 PF14783 BBS2_Mid: Ciliary BBS 96.4 0.32 7E-06 39.8 14.9 103 232-360 2-109 (111)
353 PF04053 Coatomer_WDAD: Coatom 96.4 0.38 8.3E-06 50.3 19.5 139 193-368 117-265 (443)
354 COG3391 Uncharacterized conser 96.2 1.8 4E-05 44.6 24.4 200 105-372 78-290 (381)
355 KOG2395 Protein involved in va 96.0 0.15 3.3E-06 52.5 13.6 99 196-307 397-500 (644)
356 KOG4649 PQQ (pyrrolo-quinoline 96.0 1.4 3.1E-05 41.5 21.8 136 123-302 24-160 (354)
357 COG3490 Uncharacterized protei 95.9 0.61 1.3E-05 44.5 15.9 238 104-402 71-342 (366)
358 PF15390 DUF4613: Domain of un 95.8 0.28 6.1E-06 51.4 14.7 121 176-305 54-184 (671)
359 PRK02888 nitrous-oxide reducta 95.8 0.83 1.8E-05 49.1 18.5 107 191-308 286-405 (635)
360 PF05694 SBP56: 56kDa selenium 95.7 1.9 4.2E-05 44.1 19.9 182 84-310 106-345 (461)
361 PF02897 Peptidase_S9_N: Proly 95.7 3.3 7.3E-05 43.2 27.6 197 105-365 128-357 (414)
362 COG3386 Gluconolactonase [Carb 95.6 2.8 6E-05 41.7 22.2 127 230-372 111-249 (307)
363 PF12234 Rav1p_C: RAVE protein 95.6 0.55 1.2E-05 50.8 16.5 107 249-364 42-155 (631)
364 KOG2444 WD40 repeat protein [G 95.5 0.031 6.7E-07 51.4 6.1 102 193-306 70-176 (238)
365 KOG2444 WD40 repeat protein [G 95.4 0.057 1.2E-06 49.7 7.2 104 123-265 71-178 (238)
366 cd00216 PQQ_DH Dehydrogenases 95.2 2.4 5.3E-05 45.3 20.4 202 123-370 62-324 (488)
367 KOG2079 Vacuolar assembly/sort 95.1 0.064 1.4E-06 59.5 7.8 100 193-306 99-202 (1206)
368 PF15390 DUF4613: Domain of un 95.1 1 2.2E-05 47.4 15.9 156 178-366 19-187 (671)
369 PRK13616 lipoprotein LpqB; Pro 95.1 1.2 2.6E-05 48.5 17.6 155 180-365 351-525 (591)
370 PF04841 Vps16_N: Vps16, N-ter 95.1 4.5 9.7E-05 42.2 21.3 30 277-306 216-245 (410)
371 PF00930 DPPIV_N: Dipeptidyl p 95.1 0.38 8.2E-06 49.1 13.2 103 191-306 2-130 (353)
372 PRK13616 lipoprotein LpqB; Pro 95.0 2.5 5.3E-05 46.2 19.7 106 183-306 400-524 (591)
373 COG3391 Uncharacterized conser 94.8 5.4 0.00012 41.1 21.0 184 183-396 77-270 (381)
374 PF12234 Rav1p_C: RAVE protein 94.8 0.53 1.1E-05 50.9 13.6 104 128-264 47-156 (631)
375 PHA02713 hypothetical protein; 94.8 1.1 2.4E-05 48.7 16.5 152 192-372 351-540 (557)
376 PF10647 Gmad1: Lipoprotein Lp 94.7 4.5 9.7E-05 39.1 19.1 154 183-358 27-188 (253)
377 PF14583 Pectate_lyase22: Olig 94.6 5.9 0.00013 40.2 23.0 169 205-403 170-375 (386)
378 KOG4649 PQQ (pyrrolo-quinoline 94.6 1.8 4E-05 40.8 14.6 100 194-308 24-124 (354)
379 cd00216 PQQ_DH Dehydrogenases 94.5 7.6 0.00016 41.6 21.9 26 123-148 111-136 (488)
380 PF12894 Apc4_WD40: Anaphase-p 94.5 0.14 3.1E-06 34.9 5.6 31 335-365 11-41 (47)
381 KOG1916 Nuclear protein, conta 94.4 0.059 1.3E-06 58.6 5.4 111 183-306 184-322 (1283)
382 PF00780 CNH: CNH domain; Int 94.4 5.3 0.00011 38.9 19.0 150 191-369 5-169 (275)
383 PF08728 CRT10: CRT10; InterP 94.3 2.5 5.4E-05 46.4 17.2 108 192-306 113-245 (717)
384 PF12894 Apc4_WD40: Anaphase-p 94.2 0.17 3.6E-06 34.6 5.4 30 277-306 11-40 (47)
385 COG3490 Uncharacterized protei 93.8 3 6.4E-05 40.0 14.5 55 236-296 120-180 (366)
386 PF14870 PSII_BNR: Photosynthe 93.6 8.1 0.00018 38.2 19.4 153 178-362 144-301 (302)
387 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 11 0.00024 39.0 22.1 45 328-372 300-344 (415)
388 TIGR02604 Piru_Ver_Nterm putat 93.1 4.6 9.9E-05 41.4 16.4 103 182-296 16-142 (367)
389 KOG3630 Nuclear pore complex, 93.1 1.4 3E-05 49.8 12.9 143 191-352 110-260 (1405)
390 PF02897 Peptidase_S9_N: Proly 93.1 7.5 0.00016 40.5 18.4 109 187-308 129-261 (414)
391 COG3204 Uncharacterized protei 92.5 11 0.00023 36.6 18.9 160 103-306 88-262 (316)
392 COG3386 Gluconolactonase [Carb 92.5 7.8 0.00017 38.5 16.4 106 182-297 165-275 (307)
393 PF00780 CNH: CNH domain; Int 92.4 11 0.00025 36.5 23.9 145 194-372 106-262 (275)
394 PF08728 CRT10: CRT10; InterP 92.1 10 0.00023 41.7 17.8 153 193-364 49-245 (717)
395 PF05694 SBP56: 56kDa selenium 92.0 6.3 0.00014 40.5 15.0 152 102-296 182-392 (461)
396 KOG4441 Proteins containing BT 91.7 10 0.00022 41.3 17.6 150 192-372 380-553 (571)
397 PF10168 Nup88: Nuclear pore c 91.6 7.1 0.00015 43.6 16.3 83 278-366 85-180 (717)
398 PHA02713 hypothetical protein; 91.0 24 0.00051 38.5 19.7 54 346-400 463-523 (557)
399 PF10168 Nup88: Nuclear pore c 90.3 9.2 0.0002 42.7 15.7 74 230-309 85-181 (717)
400 PHA03098 kelch-like protein; P 90.2 22 0.00048 38.5 18.7 27 346-372 487-518 (534)
401 PF10313 DUF2415: Uncharacteri 90.2 1.3 2.9E-05 29.3 5.5 34 230-266 1-35 (43)
402 KOG2247 WD40 repeat-containing 90.2 0.051 1.1E-06 55.3 -1.6 144 183-361 38-184 (615)
403 KOG1916 Nuclear protein, conta 90.2 0.69 1.5E-05 50.8 6.6 169 175-365 129-323 (1283)
404 PLN00033 photosystem II stabil 89.7 26 0.00057 36.3 17.6 111 229-362 280-396 (398)
405 KOG4441 Proteins containing BT 89.6 21 0.00046 38.9 17.7 156 183-371 326-505 (571)
406 COG5167 VID27 Protein involved 89.3 6 0.00013 41.1 12.1 58 248-307 574-632 (776)
407 KOG2377 Uncharacterized conser 89.2 14 0.00029 38.1 14.3 151 192-368 32-188 (657)
408 PF14583 Pectate_lyase22: Olig 89.1 28 0.00062 35.4 20.1 155 191-370 90-277 (386)
409 KOG3630 Nuclear pore complex, 88.6 4.6 9.9E-05 45.9 11.5 98 182-294 158-260 (1405)
410 PF10313 DUF2415: Uncharacteri 88.5 1.5 3.2E-05 29.2 4.8 31 278-308 1-34 (43)
411 TIGR02604 Piru_Ver_Nterm putat 88.2 17 0.00036 37.3 15.2 109 230-354 14-142 (367)
412 COG5276 Uncharacterized conser 87.9 28 0.0006 33.9 19.2 147 183-366 90-242 (370)
413 KOG4499 Ca2+-binding protein R 87.7 25 0.00053 33.0 14.2 94 232-346 160-264 (310)
414 PF06433 Me-amine-dh_H: Methyl 87.5 33 0.00072 34.3 21.4 159 189-372 144-327 (342)
415 PF14727 PHTB1_N: PTHB1 N-term 87.1 41 0.00089 35.0 17.5 154 192-365 36-204 (418)
416 TIGR03074 PQQ_membr_DH membran 87.0 60 0.0013 36.8 23.2 24 349-372 461-484 (764)
417 KOG2377 Uncharacterized conser 86.7 11 0.00023 38.8 11.9 109 177-297 65-173 (657)
418 PF05096 Glu_cyclase_2: Glutam 86.7 31 0.00068 33.2 20.9 201 91-354 34-249 (264)
419 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.6 51 0.0011 35.6 21.5 199 123-370 70-338 (527)
420 KOG4460 Nuclear pore complex, 86.3 9.7 0.00021 39.7 11.5 72 231-309 105-200 (741)
421 PF14761 HPS3_N: Hermansky-Pud 86.1 18 0.00038 33.6 12.1 120 248-369 30-167 (215)
422 PRK13684 Ycf48-like protein; P 85.9 39 0.00084 34.1 16.1 153 178-364 172-330 (334)
423 KOG2280 Vacuolar assembly/sort 85.2 65 0.0014 35.5 18.5 75 335-409 216-298 (829)
424 PF12657 TFIIIC_delta: Transcr 85.2 7.7 0.00017 34.9 9.6 35 231-265 87-122 (173)
425 COG5167 VID27 Protein involved 85.2 14 0.0003 38.5 12.0 144 196-365 483-632 (776)
426 TIGR03118 PEPCTERM_chp_1 conse 85.1 41 0.00088 33.0 21.1 214 103-370 25-284 (336)
427 PHA03098 kelch-like protein; P 84.2 19 0.00042 38.9 13.9 102 192-307 294-414 (534)
428 PF07569 Hira: TUP1-like enhan 84.0 8.5 0.00018 36.2 9.5 79 285-371 18-101 (219)
429 KOG4460 Nuclear pore complex, 83.8 15 0.00033 38.4 11.6 89 279-367 105-200 (741)
430 COG3204 Uncharacterized protei 83.3 47 0.001 32.4 20.2 165 175-367 82-265 (316)
431 PHA02790 Kelch-like protein; P 82.8 42 0.00091 35.8 15.4 172 192-397 271-454 (480)
432 PRK13684 Ycf48-like protein; P 82.8 57 0.0012 32.9 17.1 112 179-306 215-330 (334)
433 PF07569 Hira: TUP1-like enhan 82.3 6.3 0.00014 37.1 8.0 24 191-214 20-43 (219)
434 KOG4499 Ca2+-binding protein R 81.7 34 0.00075 32.1 12.0 101 105-240 162-264 (310)
435 PF14870 PSII_BNR: Photosynthe 81.0 61 0.0013 32.1 25.2 115 226-361 141-257 (302)
436 KOG1983 Tomosyn and related SN 79.6 41 0.00089 39.3 14.7 26 344-369 243-268 (993)
437 KOG2247 WD40 repeat-containing 78.8 0.45 9.7E-06 48.7 -1.0 141 97-293 32-175 (615)
438 PF12657 TFIIIC_delta: Transcr 78.8 15 0.00033 33.0 9.0 30 336-365 86-121 (173)
439 PF07676 PD40: WD40-like Beta 78.4 8 0.00017 24.7 5.2 30 275-304 6-38 (39)
440 PF10647 Gmad1: Lipoprotein Lp 77.3 71 0.0015 30.7 23.0 109 183-303 69-192 (253)
441 TIGR03606 non_repeat_PQQ dehyd 77.2 1E+02 0.0022 32.5 20.7 31 102-142 31-61 (454)
442 PF07250 Glyoxal_oxid_N: Glyox 76.5 42 0.0009 32.1 11.4 144 205-371 48-203 (243)
443 TIGR03548 mutarot_permut cycli 75.9 89 0.0019 31.2 15.9 59 248-307 125-194 (323)
444 PF14761 HPS3_N: Hermansky-Pud 75.9 68 0.0015 29.8 14.9 103 194-308 29-164 (215)
445 PF07995 GSDH: Glucose / Sorbo 75.9 40 0.00086 34.0 12.0 24 104-138 5-28 (331)
446 PF14655 RAB3GAP2_N: Rab3 GTPa 75.7 43 0.00094 34.8 12.2 48 224-278 302-350 (415)
447 TIGR03547 muta_rot_YjhT mutatr 75.3 96 0.0021 31.3 15.7 39 358-397 291-329 (346)
448 PF06433 Me-amine-dh_H: Methyl 74.7 98 0.0021 31.1 18.8 169 91-307 129-320 (342)
449 KOG1900 Nuclear pore complex, 74.4 43 0.00092 39.3 12.5 151 202-366 98-273 (1311)
450 PHA02790 Kelch-like protein; P 74.2 1.3E+02 0.0028 32.2 18.6 146 192-370 318-475 (480)
451 PF12768 Rax2: Cortical protei 73.9 74 0.0016 31.2 12.8 97 176-287 34-146 (281)
452 TIGR03606 non_repeat_PQQ dehyd 73.8 1E+02 0.0022 32.5 14.5 55 229-289 29-90 (454)
453 PLN00033 photosystem II stabil 73.7 1.2E+02 0.0025 31.5 17.9 111 179-304 281-396 (398)
454 PF07995 GSDH: Glucose / Sorbo 71.7 53 0.0011 33.1 11.7 112 232-358 4-136 (331)
455 KOG1897 Damage-specific DNA bi 69.8 2.1E+02 0.0046 32.8 18.1 155 183-366 778-943 (1096)
456 PF07676 PD40: WD40-like Beta 69.5 20 0.00042 22.9 5.4 31 332-362 5-38 (39)
457 KOG1900 Nuclear pore complex, 67.5 1.4E+02 0.0029 35.4 14.5 75 228-308 177-273 (1311)
458 PF10214 Rrn6: RNA polymerase 66.4 2.4E+02 0.0052 32.2 19.2 126 105-265 150-277 (765)
459 PF11635 Med16: Mediator compl 66.2 2.4E+02 0.0052 32.1 22.3 124 231-360 182-345 (753)
460 PF12768 Rax2: Cortical protei 66.1 70 0.0015 31.4 10.7 50 258-308 18-73 (281)
461 PF11715 Nup160: Nucleoporin N 65.1 26 0.00056 38.1 8.5 34 336-369 215-252 (547)
462 PF11715 Nup160: Nucleoporin N 63.9 29 0.00062 37.8 8.6 71 192-270 157-253 (547)
463 PRK10115 protease 2; Provision 62.8 2.6E+02 0.0057 31.4 25.9 197 102-365 128-344 (686)
464 PF13449 Phytase-like: Esteras 62.1 1.8E+02 0.0038 29.2 18.3 104 183-296 23-165 (326)
465 KOG1896 mRNA cleavage and poly 58.6 3.7E+02 0.008 31.8 15.6 113 176-306 1095-1212(1366)
466 PF05096 Glu_cyclase_2: Glutam 56.5 1.9E+02 0.0042 27.9 16.0 109 183-310 48-160 (264)
467 KOG1896 mRNA cleavage and poly 56.5 2.5E+02 0.0054 33.1 13.8 148 194-367 1047-1215(1366)
468 PRK14131 N-acetylneuraminic ac 56.4 2.4E+02 0.0052 28.9 18.9 38 359-397 314-351 (376)
469 TIGR02276 beta_rpt_yvtn 40-res 55.7 51 0.0011 21.0 6.2 31 191-227 1-32 (42)
470 TIGR03075 PQQ_enz_alc_DH PQQ-d 55.5 3E+02 0.0065 29.8 17.2 25 123-147 121-145 (527)
471 COG4590 ABC-type uncharacteriz 55.4 61 0.0013 33.5 8.2 152 191-368 230-389 (733)
472 PF10214 Rrn6: RNA polymerase 54.0 3.9E+02 0.0084 30.6 20.3 116 183-308 149-277 (765)
473 KOG2280 Vacuolar assembly/sort 53.8 3.6E+02 0.0078 30.1 15.7 30 278-307 217-246 (829)
474 TIGR02269 Myxococcus xanthus p 53.5 7.5 0.00016 34.7 1.4 18 537-554 44-61 (211)
475 PF08801 Nucleoporin_N: Nup133 53.1 2.5E+02 0.0053 29.3 13.1 31 336-366 190-220 (422)
476 PF07250 Glyoxal_oxid_N: Glyox 52.5 2.2E+02 0.0047 27.2 12.1 108 191-307 76-197 (243)
477 KOG2714 SETA binding protein S 50.8 2.1E+02 0.0046 29.5 11.1 130 194-366 236-372 (465)
478 TIGR02276 beta_rpt_yvtn 40-res 49.5 58 0.0012 20.7 5.1 28 345-372 1-29 (42)
479 KOG1898 Splicing factor 3b, su 49.3 4.9E+02 0.011 30.4 15.7 170 204-402 854-1042(1205)
480 PF03022 MRJP: Major royal jel 48.8 2.7E+02 0.0059 27.3 18.2 30 279-308 187-216 (287)
481 COG3823 Glutamine cyclotransfe 47.7 2.4E+02 0.0052 26.3 13.8 56 196-265 104-159 (262)
482 TIGR03074 PQQ_membr_DH membran 44.9 5.2E+02 0.011 29.5 18.8 26 123-148 261-286 (764)
483 PF05935 Arylsulfotrans: Aryls 44.7 3.8E+02 0.0082 28.6 12.9 34 337-370 272-306 (477)
484 KOG3522 Predicted guanine nucl 44.1 98 0.0021 34.7 8.2 143 194-367 548-699 (925)
485 TIGR02171 Fb_sc_TIGR02171 Fibr 43.7 1.9E+02 0.004 33.2 10.4 100 243-358 315-422 (912)
486 KOG1897 Damage-specific DNA bi 43.4 5.8E+02 0.013 29.6 19.1 112 192-308 498-614 (1096)
487 PF03088 Str_synth: Strictosid 42.6 86 0.0019 24.7 5.7 38 256-295 36-74 (89)
488 COG5290 IkappaB kinase complex 40.9 2.2E+02 0.0049 31.8 10.1 93 184-289 251-348 (1243)
489 KOG2109 WD40 repeat protein [G 40.4 30 0.00064 37.4 3.6 74 220-299 306-390 (788)
490 KOG1432 Predicted DNA repair e 40.0 17 0.00036 36.1 1.6 20 528-547 312-331 (379)
491 PF01731 Arylesterase: Arylest 39.7 1.2E+02 0.0026 23.7 6.1 28 280-307 56-84 (86)
492 COG5276 Uncharacterized conser 39.3 3.9E+02 0.0084 26.4 25.6 162 92-308 79-242 (370)
493 PF01436 NHL: NHL repeat; Int 38.8 80 0.0017 18.5 3.9 25 182-208 4-28 (28)
494 TIGR03118 PEPCTERM_chp_1 conse 37.4 4.3E+02 0.0092 26.3 14.5 124 182-307 25-170 (336)
495 COG4590 ABC-type uncharacteriz 36.0 3.3E+02 0.0071 28.5 9.9 108 192-309 279-388 (733)
496 PF03022 MRJP: Major royal jel 35.7 4.4E+02 0.0094 25.9 18.8 133 229-366 60-216 (287)
497 PLN02153 epithiospecifier prot 35.7 4.6E+02 0.01 26.2 16.9 184 182-396 25-258 (341)
498 COG4257 Vgb Streptogramin lyas 35.4 4.3E+02 0.0094 25.8 16.1 194 84-353 131-334 (353)
499 KOG3522 Predicted guanine nucl 34.9 1.2E+02 0.0025 34.1 7.1 145 124-307 549-697 (925)
500 smart00564 PQQ beta-propeller 34.3 75 0.0016 19.0 3.5 23 123-145 7-29 (33)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-36 Score=281.99 Aligned_cols=272 Identities=15% Similarity=0.240 Sum_probs=234.2
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee-eEEeccCC---------------
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM-KAIYLSSM--------------- 153 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~-~~l~~~~~--------------- 153 (568)
..+..+.+|.. .|.+|+|+|++ ..||+|+.||+|++||..+++++ +.|.+|..
T Consensus 148 Tp~~t~KgH~~-WVlcvawsPDg----------k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~ 216 (480)
T KOG0271|consen 148 TPLFTCKGHKN-WVLCVAWSPDG----------KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP 216 (480)
T ss_pred CcceeecCCcc-EEEEEEECCCc----------chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC
Confidence 44667899999 88899999999 89999999999999999886554 55666665
Q ss_pred ----ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC
Q 008363 154 ----KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA 227 (568)
Q Consensus 154 ----~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 227 (568)
++++.|+.+++|+... |...+.||+.+| +||.|- .+ .+|++|+.|++|++|+...+ .+.+.+++
T Consensus 217 ~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~V-TCvrwG--G~-gliySgS~DrtIkvw~a~dG------~~~r~lkG 286 (480)
T KOG0271|consen 217 CRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASV-TCVRWG--GE-GLIYSGSQDRTIKVWRALDG------KLCRELKG 286 (480)
T ss_pred ccceecccCCCCEEEEEccCceEEEEeccCccce-EEEEEc--CC-ceEEecCCCceEEEEEccch------hHHHhhcc
Confidence 6778899999999877 888999999999 999998 55 49999999999999999866 88999999
Q ss_pred CCCCeeEEEEcc-----------CCCC-------------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363 228 DTLPIRAVSWAP-----------AESD-------------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA 276 (568)
Q Consensus 228 h~~~V~~v~~~p-----------~~~~-------------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h 276 (568)
|...|+.|+.+. .+.. ..++..+++|++|. +.+|+.....+++..+.+|
T Consensus 287 HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgH 366 (480)
T KOG0271|consen 287 HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGH 366 (480)
T ss_pred cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhch
Confidence 999999998772 2200 01345799999998 9999998887899999999
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363 277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356 (568)
Q Consensus 277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D 356 (568)
..-|+.+.||||+++|++++.|..|+|||-+ +|+.+ .+|.||-++|+.++|+.|.++|++||.|
T Consensus 367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~--------tGk~l--------asfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 367 QALVNHVSFSPDGRYIASASFDKSVKLWDGR--------TGKFL--------ASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred hhheeeEEECCCccEEEEeecccceeeeeCC--------Ccchh--------hhhhhccceeEEEEeccCccEEEEcCCC
Confidence 9999999999999999999999999999995 58665 6999999999999999999999999999
Q ss_pred CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 357 GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 357 g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
.++++|++.+.++..+...+ .....|.-+++||..++.+...
T Consensus 431 sTLKvw~V~tkKl~~DLpGh-~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDLPGH-ADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred ceEEEEEeeeeeecccCCCC-CceEEEEEecCCCceeecCCCc
Confidence 99999999998888774333 3456677899999988776443
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.6e-35 Score=279.20 Aligned_cols=265 Identities=16% Similarity=0.177 Sum_probs=232.6
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCC
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDP 159 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~ 159 (568)
++-+. .+..+.|++++ ..||||+.+|.++||+.++...+.+|++|.. ++++.|
T Consensus 172 ~gd~r-Pis~~~fS~ds----------~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 172 VGDTR-PISGCSFSRDS----------KHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred ccCCC-cceeeEeecCC----------CeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccC
Confidence 34444 55589999999 8999999999999999999999999999876 567899
Q ss_pred ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
+.+++|.... .+..+.||...| ..++|+ |+|++|+++|.|.+-++||+.++ ..+....||+..|.+++|
T Consensus 241 gtvklw~~~~e~~l~~l~gH~~RV-s~VafH--PsG~~L~TasfD~tWRlWD~~tk------~ElL~QEGHs~~v~~iaf 311 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQDLEGHLARV-SRVAFH--PSGKFLGTASFDSTWRLWDLETK------SELLLQEGHSKGVFSIAF 311 (459)
T ss_pred CceeeeccCCCcchhhhhcchhhh-eeeeec--CCCceeeecccccchhhcccccc------hhhHhhcccccccceeEe
Confidence 9999998876 677788999999 999999 88999999999999999999987 666677899999999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
+++| .+++|||.|. -+|||+|++ +++..+.+|...|.+|+|+|+|..|++|+.|++++|||+|..
T Consensus 312 ~~DG------SL~~tGGlD~~~RvWDlRtg-r~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r------- 377 (459)
T KOG0272|consen 312 QPDG------SLAATGGLDSLGRVWDLRTG-RCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR------- 377 (459)
T ss_pred cCCC------ceeeccCccchhheeecccC-cEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc-------
Confidence 9999 7999999999 999999999 999999999999999999999999999999999999999763
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
..+.++.+|...|+.|.|+|. |.+|+|++.|++++||...+....+....+.. .+++..++.++..|+.
T Consensus 378 ---------~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~-kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 378 ---------SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG-KVISLDISPDSQAIAT 447 (459)
T ss_pred ---------ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc-ceEEEEeccCCceEEE
Confidence 235799999999999999994 79999999999999999988776665444433 3455568888888888
Q ss_pred cccCCCCCc
Q 008363 396 NTPLDNTPV 404 (568)
Q Consensus 396 ~~~~~~~~~ 404 (568)
.++...+.+
T Consensus 448 ~s~DRT~KL 456 (459)
T KOG0272|consen 448 SSFDRTIKL 456 (459)
T ss_pred eccCceeee
Confidence 777666644
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=271.82 Aligned_cols=267 Identities=14% Similarity=0.198 Sum_probs=230.7
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR 160 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~ 160 (568)
..+|.+.++ +++|+|++ ..||+|++|.++|+||+.+...+.+..+|.. ++|+.++
T Consensus 111 ~~GH~e~Vl-~~~fsp~g----------~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg 179 (480)
T KOG0271|consen 111 IAGHGEAVL-SVQFSPTG----------SRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDG 179 (480)
T ss_pred cCCCCCcEE-EEEecCCC----------ceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCC
Confidence 458999777 99999999 8999999999999999999989999988887 7899999
Q ss_pred eEEEeecce---ecccccCCcCccceEEEEccC---CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 161 FVKLEPVFR---CSMLKCGGTQSIPLTMEWSTS---PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 161 ~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~---~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
.|.+|+..+ ....+.+|...| ++++|.|. |..++||+++.||+|+|||+..+ .++..+.+|+.+|+|
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~I-t~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWI-TALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------TCVRTLSGHTASVTC 252 (480)
T ss_pred eEEEecCCCCCcccccccCcccce-eEEeecccccCCCccceecccCCCCEEEEEccCc------eEEEEeccCccceEE
Confidence 999999776 345678999999 99999874 66789999999999999999976 899999999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEc-----------CCCC------------
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWL-----------PDPG------------ 290 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-----------p~~~------------ 290 (568)
|.|--.+ +|+||+.|+ |++|+...+ .....+.+|...|+.|+.+ |.++
T Consensus 253 vrwGG~g-------liySgS~DrtIkvw~a~dG-~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 253 VRWGGEG-------LIYSGSQDRTIKVWRALDG-KLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred EEEcCCc-------eEEecCCCceEEEEEccch-hHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 9999886 999999999 999999987 8889999999999999877 3333
Q ss_pred -------------EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 291 -------------CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 291 -------------~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
.|++|++|.++.+|+..... +++..+.+|...|+.+.||||+++||++|.|.
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDk 389 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---------------KPITRMTGHQALVNHVSFSPDGRYIASASFDK 389 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccc---------------cchhhhhchhhheeeEEECCCccEEEEeeccc
Confidence 49999999999999985422 55678899999999999999999999999999
Q ss_pred eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363 358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 358 ~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
.|++|+..++++......+-.+.+. .+++.|...+.+++....+.
T Consensus 390 SVkLW~g~tGk~lasfRGHv~~VYq-vawsaDsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 390 SVKLWDGRTGKFLASFRGHVAAVYQ-VAWSADSRLLVSGSKDSTLK 434 (480)
T ss_pred ceeeeeCCCcchhhhhhhccceeEE-EEeccCccEEEEcCCCceEE
Confidence 9999999999887664444433333 46778877777777666553
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=276.10 Aligned_cols=244 Identities=15% Similarity=0.212 Sum_probs=218.5
Q ss_pred CcccCCCCCCCcceEEEeeccCCceeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---
Q 008363 78 LVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--- 153 (568)
Q Consensus 78 ~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--- 153 (568)
.+...+......+.+..+.+|.+.+. ++.|+|. .. ..||+|+.||+|++|++.+...+..|.+|..
T Consensus 196 sG~~kvW~~~~~~~~~~l~gH~~~v~-~~~fhP~~~~---------~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs 265 (459)
T KOG0272|consen 196 SGLVKVWSVPQCNLLQTLRGHTSRVG-AAVFHPVDSD---------LNLATASADGTVKLWKLSQETPLQDLEGHLARVS 265 (459)
T ss_pred CCceeEeecCCcceeEEEecccccee-eEEEccCCCc---------cceeeeccCCceeeeccCCCcchhhhhcchhhhe
Confidence 34455555566688889999999777 9999998 33 6899999999999999999888888877655
Q ss_pred -----------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc
Q 008363 154 -----------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR 220 (568)
Q Consensus 154 -----------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 220 (568)
.+++.|...++|++.+ ......||...| ++++|+ ++|.++++|+.|..-+|||++++ .
T Consensus 266 ~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v-~~iaf~--~DGSL~~tGGlD~~~RvWDlRtg------r 336 (459)
T KOG0272|consen 266 RVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGV-FSIAFQ--PDGSLAATGGLDSLGRVWDLRTG------R 336 (459)
T ss_pred eeeecCCCceeeecccccchhhcccccchhhHhhccccccc-ceeEec--CCCceeeccCccchhheeecccC------c
Confidence 6788999999999988 344556999999 999999 99999999999999999999988 9
Q ss_pred eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC
Q 008363 221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD 298 (568)
Q Consensus 221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d 298 (568)
++..+.+|..+|.+|+|+|+| ..|||||.|+ ++|||+|.. .++.++.+|..-|+.|+|+| .|.+|++++.|
T Consensus 337 ~im~L~gH~k~I~~V~fsPNG------y~lATgs~Dnt~kVWDLR~r-~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNG------YHLATGSSDNTCKVWDLRMR-SELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred EEEEecccccceeeEeECCCc------eEEeecCCCCcEEEeeeccc-ccceecccccchhhheEecccCCeEEEEcccC
Confidence 999999999999999999999 9999999999 999999977 78999999999999999999 78999999999
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
++++||..+. . +++.++.||.+.|.++.+++++.+|+|++.|.++++|.
T Consensus 410 ~t~kiWs~~~--------~--------~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 410 NTVKIWSTRT--------W--------SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cceeeecCCC--------c--------ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9999999853 4 44579999999999999999999999999999999995
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.7e-33 Score=288.15 Aligned_cols=208 Identities=20% Similarity=0.343 Sum_probs=192.3
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
.......+|.+ .|+.+.|+|+. ++|++|+.|++||+|.+.+..++-.+
T Consensus 442 ~~~~~L~GH~G-PVyg~sFsPd~----------rfLlScSED~svRLWsl~t~s~~V~y--------------------- 489 (707)
T KOG0263|consen 442 GTSRTLYGHSG-PVYGCSFSPDR----------RFLLSCSEDSSVRLWSLDTWSCLVIY--------------------- 489 (707)
T ss_pred ceeEEeecCCC-ceeeeeecccc----------cceeeccCCcceeeeecccceeEEEe---------------------
Confidence 34455789999 66699999999 89999999999999999998777665
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.||..+| +.++|+ |-|-++|||+.|++.++|..... .+++.|.+|-+.|.|+.|+|+. +|
T Consensus 490 -----~GH~~PV-wdV~F~--P~GyYFatas~D~tArLWs~d~~------~PlRifaghlsDV~cv~FHPNs------~Y 549 (707)
T KOG0263|consen 490 -----KGHLAPV-WDVQFA--PRGYYFATASHDQTARLWSTDHN------KPLRIFAGHLSDVDCVSFHPNS------NY 549 (707)
T ss_pred -----cCCCcce-eeEEec--CCceEEEecCCCceeeeeecccC------CchhhhcccccccceEEECCcc------cc
Confidence 8999999 999999 77999999999999999999865 8999999999999999999999 99
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+|+||.|. ||+||+.++ ..++.|.||.++|.+|+|||+|++|++|+.||.|.+||+. +|+++
T Consensus 550 ~aTGSsD~tVRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~--------~~~~v-------- 612 (707)
T KOG0263|consen 550 VATGSSDRTVRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA--------NGSLV-------- 612 (707)
T ss_pred cccCCCCceEEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC--------CCcch--------
Confidence 99999998 999999998 8899999999999999999999999999999999999994 46665
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..+.+|++.|.+|.|+.+|..||+|+.|.+|++||+..
T Consensus 613 ~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred hhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 58899999999999999999999999999999999953
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=237.45 Aligned_cols=267 Identities=19% Similarity=0.227 Sum_probs=222.2
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~ 158 (568)
..+.+|.+.+ .++.|+++. +.|++++.||.+.|||.-+......+.-+.. +.|..
T Consensus 49 r~LkGH~~Ki-~~~~ws~Ds----------r~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 49 RTLKGHLNKI-YAMDWSTDS----------RRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred EEecccccce-eeeEecCCc----------CeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCc
Confidence 3467999955 599999999 8999999999999999988666555543333 66778
Q ss_pred CceEEEeecce--------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 159 PRFVKLEPVFR--------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 159 ~~~v~~~~~~~--------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
+....++++.. ....+.+|++.+ .|+.|- +| .+|++|+.|.+..+||+.++ +.+..|.+|.+
T Consensus 118 dN~Csiy~ls~~d~~g~~~v~r~l~gHtgyl-ScC~f~--dD-~~ilT~SGD~TCalWDie~g------~~~~~f~GH~g 187 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGNVRVSRELAGHTGYL-SCCRFL--DD-NHILTGSGDMTCALWDIETG------QQTQVFHGHTG 187 (343)
T ss_pred CceeEEEecccccccccceeeeeecCcccee-EEEEEc--CC-CceEecCCCceEEEEEcccc------eEEEEecCCcc
Confidence 88888877763 234578999999 999987 44 69999999999999999987 89999999999
Q ss_pred CeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 231 PIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 231 ~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
.|.+++++| ++ +.|+||+.|+ .+|||+|.+ .++..|.+|...|++|+|.|+|.-+++|++|++.++||+|.
T Consensus 188 DV~slsl~p~~~------ntFvSg~cD~~aklWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa 260 (343)
T KOG0286|consen 188 DVMSLSLSPSDG------NTFVSGGCDKSAKLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA 260 (343)
T ss_pred cEEEEecCCCCC------CeEEecccccceeeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence 999999999 55 9999999999 999999998 99999999999999999999999999999999999999975
Q ss_pred cccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV 386 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~ 386 (568)
.+. +..|. .-..+|++++||..|++|++|..|.++.+||.-.++..-....+ .-.+.|..+
T Consensus 261 --------D~~--------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl~~ 323 (343)
T KOG0286|consen 261 --------DQE--------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCLGV 323 (343)
T ss_pred --------CcE--------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEEEE
Confidence 222 23443 23468999999999999999999999999998655433322222 234678889
Q ss_pred cCCCCceEEcccCCCCCc
Q 008363 387 TEDESAITVNTPLDNTPV 404 (568)
Q Consensus 387 ~~~~~~i~~~~~~~~~~~ 404 (568)
++||..+..+++...+.+
T Consensus 324 s~DG~av~TgSWDs~lri 341 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRI 341 (343)
T ss_pred CCCCcEEEecchhHheee
Confidence 999999999998876643
No 7
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=1.2e-31 Score=274.58 Aligned_cols=274 Identities=16% Similarity=0.223 Sum_probs=221.2
Q ss_pred CcceEEEee-ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCc----cCCCCceE
Q 008363 88 ALPRVVLCL-AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMK----EGTDPRFV 162 (568)
Q Consensus 88 ~~p~~~~~~-~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~----~~~~~~~v 162 (568)
.+|.+.... -++...+.|+.|++++ .+||.|..|..|++|.+... .++.+...... ..+.+..+
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSdds----------smlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~d~~sad~~~ 433 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDS----------SMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNIDTESADVDV 433 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCc----------chhhccccccEEEEEecchh-hhccccchhhhccccccccchhh
Confidence 455555433 3334445599999999 79999999999999999853 22222222110 01111112
Q ss_pred EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
...+... ....+.||.++| +.+.|+ |+.++|++++.|++||+|.+.+. .++..+++|..+|+++.|+|.
T Consensus 434 ~~~D~~~~~~~~~L~GH~GPV-yg~sFs--Pd~rfLlScSED~svRLWsl~t~------s~~V~y~GH~~PVwdV~F~P~ 504 (707)
T KOG0263|consen 434 DMLDDDSSGTSRTLYGHSGPV-YGCSFS--PDRRFLLSCSEDSSVRLWSLDTW------SCLVIYKGHLAPVWDVQFAPR 504 (707)
T ss_pred hhccccCCceeEEeecCCCce-eeeeec--ccccceeeccCCcceeeeecccc------eeEEEecCCCcceeeEEecCC
Confidence 2222111 233468999999 999999 88899999999999999999977 888899999999999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
| .+|||+|.|+ .++|..... .+++.+.+|-+.|.|+.|+|+..|+++||.|.+||+||+. +|..
T Consensus 505 G------yYFatas~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~--------~G~~ 569 (707)
T KOG0263|consen 505 G------YYFATASHDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS--------TGNS 569 (707)
T ss_pred c------eEEEecCCCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcC--------CCcE
Confidence 9 9999999999 999999876 8999999999999999999999999999999999999994 4744
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
++.|.||.++|.+|+|||+|++|++|+.||.|++||+.++........+ .......+++.+|..++++...
T Consensus 570 --------VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~D 640 (707)
T KOG0263|consen 570 --------VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGAD 640 (707)
T ss_pred --------EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCC
Confidence 5799999999999999999999999999999999999998777665555 4445555899999999998887
Q ss_pred CCCCcc
Q 008363 400 DNTPVP 405 (568)
Q Consensus 400 ~~~~~~ 405 (568)
..+.+.
T Consensus 641 nsV~lW 646 (707)
T KOG0263|consen 641 NSVRLW 646 (707)
T ss_pred CeEEEE
Confidence 777655
No 8
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.98 E-value=1.7e-30 Score=237.27 Aligned_cols=231 Identities=16% Similarity=0.200 Sum_probs=196.8
Q ss_pred cceeecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC
Q 008363 62 DSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL 141 (568)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~ 141 (568)
+...|.+++|+.+..+..... .+...+....+.+|++ .+.++.|.+++ .|++++.|.+.-+||+++
T Consensus 110 ~~VAcGGLdN~Csiy~ls~~d--~~g~~~v~r~l~gHtg-ylScC~f~dD~-----------~ilT~SGD~TCalWDie~ 175 (343)
T KOG0286|consen 110 NFVACGGLDNKCSIYPLSTRD--AEGNVRVSRELAGHTG-YLSCCRFLDDN-----------HILTGSGDMTCALWDIET 175 (343)
T ss_pred CeEEecCcCceeEEEeccccc--ccccceeeeeecCccc-eeEEEEEcCCC-----------ceEecCCCceEEEEEccc
Confidence 334477888876555443221 2334455556789999 77799999975 899999999999999999
Q ss_pred CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 142 LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
++.+..+ .||.+.| .+|+.+|. +++.+++|+.|++.+|||++.+ .+
T Consensus 176 g~~~~~f--------------------------~GH~gDV-~slsl~p~-~~ntFvSg~cD~~aklWD~R~~------~c 221 (343)
T KOG0286|consen 176 GQQTQVF--------------------------HGHTGDV-MSLSLSPS-DGNTFVSGGCDKSAKLWDVRSG------QC 221 (343)
T ss_pred ceEEEEe--------------------------cCCcccE-EEEecCCC-CCCeEEecccccceeeeeccCc------ce
Confidence 9999887 8999999 99999854 8899999999999999999977 89
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
++.|.+|.+.|++|.|.|+| .-|++|++|+ .++||+|.. +.+..+. .-..+|++++||-.|++|++|..|
T Consensus 222 ~qtF~ghesDINsv~ffP~G------~afatGSDD~tcRlyDlRaD-~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 222 VQTFEGHESDINSVRFFPSG------DAFATGSDDATCRLYDLRAD-QELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred eEeecccccccceEEEccCC------CeeeecCCCceeEEEeecCC-cEEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 99999999999999999999 8999999999 999999987 5555554 234578999999999999999999
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
.++.+||.-+ ++. +..+.+|...|.++..+|+|..|+|||.|.+++||.
T Consensus 295 ~~c~vWDtlk--------~e~--------vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLK--------GER--------VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccc--------cce--------EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999999833 433 468899999999999999999999999999999994
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=2.9e-29 Score=227.93 Aligned_cols=239 Identities=15% Similarity=0.231 Sum_probs=195.6
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
+..+.+|.. .|.++..++++ ++.++++.|+++++||+.+++..+.|.+|.. ++++
T Consensus 56 ~r~~~GHsH-~v~dv~~s~dg----------~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS 124 (315)
T KOG0279|consen 56 VRRLTGHSH-FVSDVVLSSDG----------NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS 124 (315)
T ss_pred eeeeeccce-EecceEEccCC----------ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC
Confidence 445678999 66699999999 8999999999999999999999999999876 7899
Q ss_pred CCceEEEeecce-ecccccCC--cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 158 DPRFVKLEPVFR-CSMLKCGG--TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 158 ~~~~v~~~~~~~-~~~~~~~h--~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
.|+++++|+... |......+ ...| .||.|+|.++.-+|++++.|++|++||+++. +....+.+|++.++.
T Consensus 125 rDkTiklwnt~g~ck~t~~~~~~~~WV-scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~------~l~~~~~gh~~~v~t 197 (315)
T KOG0279|consen 125 RDKTIKLWNTLGVCKYTIHEDSHREWV-SCVRFSPNESNPIIVSASWDKTVKVWNLRNC------QLRTTFIGHSGYVNT 197 (315)
T ss_pred CcceeeeeeecccEEEEEecCCCcCcE-EEEEEcCCCCCcEEEEccCCceEEEEccCCc------chhhccccccccEEE
Confidence 999999999987 55444433 7888 9999998776789999999999999999976 778899999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
++++|+| .+.++|+.|+ +.+||++.+ +.+..+ +|...|.+++|+|+...|+.+ .+..|+|||+..
T Consensus 198 ~~vSpDG------slcasGgkdg~~~LwdL~~~-k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~----- 263 (315)
T KOG0279|consen 198 VTVSPDG------SLCASGGKDGEAMLWDLNEG-KNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLES----- 263 (315)
T ss_pred EEECCCC------CEEecCCCCceEEEEEccCC-ceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccc-----
Confidence 9999999 8999999999 999999987 667776 678899999999986655554 455699999943
Q ss_pred CCCCCCccCccccceEE-EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 314 PATGKPFAGTKQQGLHL-VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~-~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+..+...++..... .....-...+++|+++|..|+.|-.|+.|++|.+.
T Consensus 264 ---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 264 ---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 43332111111111 11112334678999999999999999999999984
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=1.7e-29 Score=225.71 Aligned_cols=230 Identities=14% Similarity=0.207 Sum_probs=188.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCceEEEeecce----ecccccCCcCccceEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRFVKLEPVFR----CSMLKCGGTQSIPLTM 185 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~v~~~~~~~----~~~~~~~h~~~V~~~v 185 (568)
-+|++++.|.+||+|...+|.|.++++-... .......-|++.++.+ ....+.+|+..| ++|
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNV-taV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNV-TAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCce-EEE
Confidence 5899999999999999999999999876554 3334555677777766 344668999999 999
Q ss_pred EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363 186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR 264 (568)
Q Consensus 186 ~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~ 264 (568)
.|. .+|+.+++|+.||+++|||++.. .+.+.+ .|.++|++|..+|+. .-|++|..++ |++||++
T Consensus 90 gF~--~dgrWMyTgseDgt~kIWdlR~~------~~qR~~-~~~spVn~vvlhpnQ------teLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 90 GFQ--CDGRWMYTGSEDGTVKIWDLRSL------SCQRNY-QHNSPVNTVVLHPNQ------TELISGDQSGNIRVWDLG 154 (311)
T ss_pred EEe--ecCeEEEecCCCceEEEEeccCc------ccchhc-cCCCCcceEEecCCc------ceEEeecCCCcEEEEEcc
Confidence 998 89999999999999999999964 555555 567888888888887 6777887777 8888886
Q ss_pred CC------------------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 265 DP------------------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 265 ~~------------------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
.. ..|+..+..|.+.|..+.+|||+++|++++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s 234 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS 234 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec
Confidence 54 133344567899999999999999999999
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN 376 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 376 (568)
.|.+++||++..+- +.-..+.+|...+|..+||.+|.||+|++.|+.+++|++..++..+.+..+
T Consensus 235 sdktv~iwn~~~~~---------------kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 235 SDKTVKIWNTDDFF---------------KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred CCceEEEEecCCce---------------eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 99999999996541 112478899999999999999999999999999999999999888776666
Q ss_pred Ccceeee
Q 008363 377 RPMHFLC 383 (568)
Q Consensus 377 ~~~~~~~ 383 (568)
..+...|
T Consensus 300 ~K~~vc~ 306 (311)
T KOG0315|consen 300 HKAAVCV 306 (311)
T ss_pred ccccEEE
Confidence 5554443
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.97 E-value=6e-29 Score=225.95 Aligned_cols=266 Identities=17% Similarity=0.166 Sum_probs=215.2
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-----CceeeEEeccCC--------------
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSM-------------- 153 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~-------------- 153 (568)
..+.+|++.+. .++-.+.++ ..|++++.|.++.+|++.. |..++.+.+|..
T Consensus 9 ~tl~gh~d~Vt-~la~~~~~~---------~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 9 GTLEGHTDWVT-ALAIKIKNS---------DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred eeecCCCceEE-EEEeecCCC---------ceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceE
Confidence 34679999555 999999876 8999999999999999865 667888888776
Q ss_pred ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC--C
Q 008363 154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--T 229 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~ 229 (568)
.+++.|+.+++|+... ....+.||+..| ++++|+ ++.+.|++|+.|.+|++|++... +..++..+ .
T Consensus 79 lS~swD~~lrlWDl~~g~~t~~f~GH~~dV-lsva~s--~dn~qivSGSrDkTiklwnt~g~-------ck~t~~~~~~~ 148 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATGESTRRFVGHTKDV-LSVAFS--TDNRQIVSGSRDKTIKLWNTLGV-------CKYTIHEDSHR 148 (315)
T ss_pred EeccccceEEEEEecCCcEEEEEEecCCce-EEEEec--CCCceeecCCCcceeeeeeeccc-------EEEEEecCCCc
Confidence 6789999999999987 566789999999 999999 88999999999999999998744 44444443 7
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
..|.|+.|+|+. ...+|++++.|+ |++||+++. +....+.+|.+.++.+++||||..+++|+.||.+.|||++.
T Consensus 149 ~WVscvrfsP~~----~~p~Ivs~s~DktvKvWnl~~~-~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~ 223 (315)
T KOG0279|consen 149 EWVSCVRFSPNE----SNPIIVSASWDKTVKVWNLRNC-QLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNE 223 (315)
T ss_pred CcEEEEEEcCCC----CCcEEEEccCCceEEEEccCCc-chhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccC
Confidence 899999999995 347999999999 999999976 77778889999999999999999999999999999999954
Q ss_pred cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCC--------CCcce
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSR--------NRPMH 380 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~--------~~~~~ 380 (568)
++. +.. ..|...|.+++|+|+...|+.+. +-.|+|||+.++....+... ...|+
T Consensus 224 --------~k~--------lys-l~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~ 285 (315)
T KOG0279|consen 224 --------GKN--------LYS-LEAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPI 285 (315)
T ss_pred --------Cce--------eEe-ccCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcE
Confidence 433 234 45889999999999866665555 55699999998765543221 12344
Q ss_pred eeeecccCCCCceEEcccCCC
Q 008363 381 FLCGSVTEDESAITVNTPLDN 401 (568)
Q Consensus 381 ~~~~s~~~~~~~i~~~~~~~~ 401 (568)
.+.-+++.+|..+..+-....
T Consensus 286 clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 286 CLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred EEEEEEcCCCcEEEeeecCCc
Confidence 454567788888766543333
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.3e-28 Score=222.79 Aligned_cols=216 Identities=19% Similarity=0.380 Sum_probs=186.6
Q ss_pred eEEEeeccCCceeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 91 RVVLCLAHNGKVAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
.+....+|.+ .+|.++|+|- | .+||+|+.|..|+||+...+......
T Consensus 6 ~~~~~~gh~~-r~W~~awhp~~g----------~ilAscg~Dk~vriw~~~~~~s~~ck--------------------- 53 (312)
T KOG0645|consen 6 LEQKLSGHKD-RVWSVAWHPGKG----------VILASCGTDKAVRIWSTSSGDSWTCK--------------------- 53 (312)
T ss_pred eEEeecCCCC-cEEEEEeccCCc----------eEEEeecCCceEEEEecCCCCcEEEE---------------------
Confidence 3455678998 8899999998 6 79999999999999999853221110
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..+-.+|+..| .+++|+ |.|++|++|+.|.++.||.-..+ +.+++.++.||...|.+++|+++| ++
T Consensus 54 -~vld~~hkrsV-RsvAws--p~g~~La~aSFD~t~~Iw~k~~~----efecv~~lEGHEnEVK~Vaws~sG------~~ 119 (312)
T KOG0645|consen 54 -TVLDDGHKRSV-RSVAWS--PHGRYLASASFDATVVIWKKEDG----EFECVATLEGHENEVKCVAWSASG------NY 119 (312)
T ss_pred -Eeccccchhee-eeeeec--CCCcEEEEeeccceEEEeecCCC----ceeEEeeeeccccceeEEEEcCCC------CE
Confidence 00115899999 999999 77999999999999999998766 448999999999999999999999 99
Q ss_pred EEEEcCCC-EEEEECC--CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 250 ILTAGHGG-LKFWDIR--DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 250 las~s~d~-v~lwD~~--~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
||+|+.|+ |-||.+. ....+...+++|...|..+.|+|....|++++.|++|++|+-.. . ....
T Consensus 120 LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-d------------ddW~ 186 (312)
T KOG0645|consen 120 LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-D------------DDWE 186 (312)
T ss_pred EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-C------------CCee
Confidence 99999999 9999988 44477889999999999999999999999999999999998742 1 1226
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++.++.+|...|++++|++.|..|++++.|++|+||-+.
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 788999999999999999999999999999999999864
No 13
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2e-29 Score=226.05 Aligned_cols=202 Identities=21% Similarity=0.351 Sum_probs=175.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
.+++|+|+++.. +.++++++||+++|||+... ..+.. +..|...
T Consensus 62 ~LfdV~Wse~~e---------~~~~~a~GDGSLrl~d~~~~s~Pi~~--------------------------~kEH~~E 106 (311)
T KOG0277|consen 62 GLFDVAWSENHE---------NQVIAASGDGSLRLFDLTMPSKPIHK--------------------------FKEHKRE 106 (311)
T ss_pred ceeEeeecCCCc---------ceEEEEecCceEEEeccCCCCcchhH--------------------------HHhhhhh
Confidence 567999999887 89999999999999996542 22322 2789999
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
| ++++|++. .++.+++++.||+|+||+...+ ..+++|.+|...|+..+|+|.. +++|++++.|+ ++
T Consensus 107 V-~Svdwn~~-~r~~~ltsSWD~TiKLW~~~r~------~Sv~Tf~gh~~~Iy~a~~sp~~-----~nlfas~Sgd~~l~ 173 (311)
T KOG0277|consen 107 V-YSVDWNTV-RRRIFLTSSWDGTIKLWDPNRP------NSVQTFNGHNSCIYQAAFSPHI-----PNLFASASGDGTLR 173 (311)
T ss_pred e-EEeccccc-cceeEEeeccCCceEeecCCCC------cceEeecCCccEEEEEecCCCC-----CCeEEEccCCceEE
Confidence 9 99999976 4568888899999999999866 7888999999999999999997 69999999999 99
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
+||++.+.+.+. +..|...|.++.|+.- ...|++|+.|+.|+.||+|+.. .++..+.+|..+|
T Consensus 174 lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r---------------~pl~eL~gh~~AV 237 (311)
T KOG0277|consen 174 LWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR---------------TPLFELNGHGLAV 237 (311)
T ss_pred EEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc---------------ccceeecCCceEE
Confidence 999998866655 7789999999999984 5567778889999999999866 5678899999999
Q ss_pred EEEEEecCC-CEEEEEeCCCeEEEEEcCCC
Q 008363 339 WSVQVSRLT-GMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 339 ~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..+.|||.. .+|++++.|-+++|||....
T Consensus 238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 238 RKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EEEecCcchhhHhhhccccceEEecccccc
Confidence 999999985 89999999999999999643
No 14
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.2e-28 Score=238.30 Aligned_cols=249 Identities=18% Similarity=0.279 Sum_probs=214.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV 167 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~ 167 (568)
-|.+++|+.+| .+||+|+.||.++||+... ..+.++..|.. ++++.++++.+|+.
T Consensus 237 dVT~L~Wn~~G----------~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~ 305 (524)
T KOG0273|consen 237 DVTSLDWNNDG----------TLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDA 305 (524)
T ss_pred CcceEEecCCC----------CeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEec
Confidence 34599999999 8999999999999999876 44445544443 67889999999999
Q ss_pred ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.+ +.+.+.-|...- ..|+|- +...+++++.||.|+|+.+... .|+.++.+|.+.|.+|.|+|.+
T Consensus 306 ~~g~~~q~f~~~s~~~-lDVdW~---~~~~F~ts~td~~i~V~kv~~~------~P~~t~~GH~g~V~alk~n~tg---- 371 (524)
T KOG0273|consen 306 HTGTVKQQFEFHSAPA-LDVDWQ---SNDEFATSSTDGCIHVCKVGED------RPVKTFIGHHGEVNALKWNPTG---- 371 (524)
T ss_pred cCceEEEeeeeccCCc-cceEEe---cCceEeecCCCceEEEEEecCC------CcceeeecccCceEEEEECCCC----
Confidence 65 666677788775 889998 4579999999999999999876 8999999999999999999999
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC---------CEEEEEeCCCcEEEEEccccccCCCC
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP---------GCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~---------~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
.+|+|+++|+ ++||..... .+...++.|...|+.+.|+|+| ..|++++.|++|++||+.
T Consensus 372 --~LLaS~SdD~TlkiWs~~~~-~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~-------- 440 (524)
T KOG0273|consen 372 --SLLASCSDDGTLKIWSMGQS-NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE-------- 440 (524)
T ss_pred --ceEEEecCCCeeEeeecCCC-cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc--------
Confidence 8999999999 999998877 8888999999999999999975 578899999999999994
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.| .+++.|..|..+|++|+|+|+|+|||+|+.||.|.+|+..++++-+.+........+| ++.+|+.|..
T Consensus 441 ~g--------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~--Wn~~G~kl~~ 510 (524)
T KOG0273|consen 441 SG--------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELC--WNAAGDKLGA 510 (524)
T ss_pred CC--------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEE--EcCCCCEEEE
Confidence 46 4568999999999999999999999999999999999999999988877666656664 5666666654
Q ss_pred c
Q 008363 396 N 396 (568)
Q Consensus 396 ~ 396 (568)
.
T Consensus 511 ~ 511 (524)
T KOG0273|consen 511 C 511 (524)
T ss_pred E
Confidence 3
No 15
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=230.49 Aligned_cols=237 Identities=14% Similarity=0.180 Sum_probs=212.6
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCC
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDP 159 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~ 159 (568)
...+|.. .|+.+.|+|+- -++++++.|++|++||..++++...+.+|.+ ++++.|
T Consensus 103 ~l~g~r~-~vt~v~~hp~~----------~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsD 171 (406)
T KOG0295|consen 103 KLAGHRS-SVTRVIFHPSE----------ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSD 171 (406)
T ss_pred hhhcccc-ceeeeeeccCc----------eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCc
Confidence 3457777 56699999998 6899999999999999999999999999887 566777
Q ss_pred ceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 160 RFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 160 ~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
-.+++|+... |.+...+|...| .++.|- |.|++|++++.|.+|+.|++.++ .++.+|.+|...|.-++
T Consensus 172 l~~~LWd~~~~~~c~ks~~gh~h~v-S~V~f~--P~gd~ilS~srD~tik~We~~tg------~cv~t~~~h~ewvr~v~ 242 (406)
T KOG0295|consen 172 LSAKLWDFDTFFRCIKSLIGHEHGV-SSVFFL--PLGDHILSCSRDNTIKAWECDTG------YCVKTFPGHSEWVRMVR 242 (406)
T ss_pred cchhheeHHHHHHHHHHhcCcccce-eeEEEE--ecCCeeeecccccceeEEecccc------eeEEeccCchHhEEEEE
Confidence 7788998766 677888999999 999998 77899999999999999999987 99999999999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC---------------CCEEEEEeCCCc
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD---------------PGCVILSFDDGA 300 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~---------------~~~l~s~~~dg~ 300 (568)
.+.+| .++|+++.|. |++|-+.+. .+...++.|..+|.+++|-|. +.++.+++.|++
T Consensus 243 v~~DG------ti~As~s~dqtl~vW~~~t~-~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt 315 (406)
T KOG0295|consen 243 VNQDG------TIIASCSNDQTLRVWVVATK-QCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT 315 (406)
T ss_pred ecCCe------eEEEecCCCceEEEEEeccc-hhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce
Confidence 99999 8999999998 999999987 788889999999999999874 258999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 373 (568)
|++||+. +| .|+.++.+|...|..++|+|.|+||+++..|+++++||+.+....+..
T Consensus 316 Ik~wdv~--------tg--------~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 316 IKIWDVS--------TG--------MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred EEEEecc--------CC--------eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence 9999993 56 456899999999999999999999999999999999999998877653
No 16
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.96 E-value=3.5e-29 Score=238.05 Aligned_cols=222 Identities=16% Similarity=0.298 Sum_probs=194.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV 167 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~ 167 (568)
+|..|.|.|+| +.|++|+..|.+.||+..+......++.|.. +++..++.|++|..
T Consensus 98 ~V~~v~WtPeG----------RRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqp 167 (464)
T KOG0284|consen 98 PVNVVRWTPEG----------RRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQP 167 (464)
T ss_pred ceeeEEEcCCC----------ceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEeccc
Confidence 56699999999 8999999999999999877544444555544 78999999999987
Q ss_pred ce-ecccccC-CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 168 FR-CSMLKCG-GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 168 ~~-~~~~~~~-h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.- -.+.... |...| .+++|+ |+...|++++.||+|+|||.... +..+.+.+|.-.|.+++|+|..
T Consensus 168 nmnnVk~~~ahh~eaI-RdlafS--pnDskF~t~SdDg~ikiWdf~~~------kee~vL~GHgwdVksvdWHP~k---- 234 (464)
T KOG0284|consen 168 NMNNVKIIQAHHAEAI-RDLAFS--PNDSKFLTCSDDGTIKIWDFRMP------KEERVLRGHGWDVKSVDWHPTK---- 234 (464)
T ss_pred chhhhHHhhHhhhhhh-heeccC--CCCceeEEecCCCeEEEEeccCC------chhheeccCCCCcceeccCCcc----
Confidence 54 3333344 44889 999999 66789999999999999999866 6667789999999999999998
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
.+||++|.|. |++||.+++ .++.++++|...|..+.|+|++.+|+++|.|..+++||+|.+
T Consensus 235 --gLiasgskDnlVKlWDprSg-~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m--------------- 296 (464)
T KOG0284|consen 235 --GLIASGSKDNLVKLWDPRSG-SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM--------------- 296 (464)
T ss_pred --ceeEEccCCceeEeecCCCc-chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---------------
Confidence 7999999999 999999998 999999999999999999999999999999999999999843
Q ss_pred ccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~ 365 (568)
+.+.++++|...|+++.|+|-. .+|.+|+.||.|..|.+.
T Consensus 297 -kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 297 -KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred -HHHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 3356889999999999999984 899999999999999996
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=228.01 Aligned_cols=232 Identities=16% Similarity=0.256 Sum_probs=206.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR 160 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~ 160 (568)
..+|.+ +|++|++.|.+ .+|++|+.|++|+|||+.+++...++.+|.. .++.+++
T Consensus 147 i~gHlg-WVr~vavdP~n----------~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk 215 (460)
T KOG0285|consen 147 ISGHLG-WVRSVAVDPGN----------EWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDK 215 (460)
T ss_pred hhhccc-eEEEEeeCCCc----------eeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCC
Confidence 458998 99999999998 7999999999999999999999999987765 6788999
Q ss_pred eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363 161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA 238 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 238 (568)
.++.|+... ......||-..| +||+.+ |.-+.|++|+.|.+++|||+++. ..+.++.+|..+|..+.+.
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V-~~L~lh--PTldvl~t~grDst~RvWDiRtr------~~V~~l~GH~~~V~~V~~~ 286 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGV-YCLDLH--PTLDVLVTGGRDSTIRVWDIRTR------ASVHVLSGHTNPVASVMCQ 286 (460)
T ss_pred eeEEEechhhhhHHHhcccccee-EEEecc--ccceeEEecCCcceEEEeeeccc------ceEEEecCCCCcceeEEee
Confidence 999999876 667788999999 999977 66779999999999999999988 8899999999999999999
Q ss_pred cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
|.. ..++||+.|+ |++||++.+ +.+.++..|...|.+++.+|....+++++.|. |+-|++. .|
T Consensus 287 ~~d------pqvit~S~D~tvrlWDl~ag-kt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p--------~g 350 (460)
T KOG0285|consen 287 PTD------PQVITGSHDSTVRLWDLRAG-KTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP--------EG 350 (460)
T ss_pred cCC------CceEEecCCceEEEeeeccC-ceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCC--------cc
Confidence 987 6899999999 999999988 88888889999999999999988888887764 8999994 36
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
..+ +.+.+|+..|.+++...| .++++|+..|.+.+||..++..-+
T Consensus 351 ~f~--------~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ 395 (460)
T KOG0285|consen 351 EFL--------QNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQ 395 (460)
T ss_pred chh--------hccccccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccc
Confidence 554 578999999999998765 578899999999999998775443
No 18
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.7e-27 Score=235.71 Aligned_cols=264 Identities=16% Similarity=0.244 Sum_probs=219.4
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceE
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFV 162 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v 162 (568)
.|.. .|.+|.|+|..| +++++-.+|.|.||+.++...++.+.-... +.|++|..|
T Consensus 11 ~rSd-RVKsVd~HPteP----------w~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~I 79 (794)
T KOG0276|consen 11 SRSD-RVKSVDFHPTEP----------WILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQI 79 (794)
T ss_pred ccCC-ceeeeecCCCCc----------eEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceE
Confidence 3555 555999999996 688888899999999999888777754333 678999999
Q ss_pred EEeeccee--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 163 KLEPVFRC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 163 ~~~~~~~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
++....+. ...+..|...| .+++-+ |.--+++++|.|-+|++||.... ..+.++|.+|+..|.+|+|+|.
T Consensus 80 rVfnynt~ekV~~FeAH~DyI-R~iavH--Pt~P~vLtsSDDm~iKlW~we~~-----wa~~qtfeGH~HyVMqv~fnPk 151 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYI-RSIAVH--PTLPYVLTSSDDMTIKLWDWENE-----WACEQTFEGHEHYVMQVAFNPK 151 (794)
T ss_pred EEEecccceeeEEeeccccce-eeeeec--CCCCeEEecCCccEEEEeeccCc-----eeeeeEEcCcceEEEEEEecCC
Confidence 98887663 44567999999 999977 66669999999999999999865 5889999999999999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP--GCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
. ++.|||++-|+ |++|.+.++ .+..++.+|...|+|++|-+.| .+|++|++|.+|+|||.++ .
T Consensus 152 D-----~ntFaS~sLDrTVKVWslgs~-~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt--------k 217 (794)
T KOG0276|consen 152 D-----PNTFASASLDRTVKVWSLGSP-HPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT--------K 217 (794)
T ss_pred C-----ccceeeeeccccEEEEEcCCC-CCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch--------H
Confidence 7 59999999998 999999988 8999999999999999998754 7999999999999999954 3
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
+|++++.||...|..+.|+|.-.+|++||.||+++||+..+-+++.... ....+.=|.+.-..+..+++|.
T Consensus 218 --------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-~gleRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 218 --------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-YGLERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred --------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-cCCceEEEEeecCCCCeEEEec
Confidence 6778999999999999999999999999999999999998888776522 2233344444445555566654
Q ss_pred cCCCC
Q 008363 398 PLDNT 402 (568)
Q Consensus 398 ~~~~~ 402 (568)
....+
T Consensus 289 Deg~i 293 (794)
T KOG0276|consen 289 DEGSV 293 (794)
T ss_pred cCCcE
Confidence 44443
No 19
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=229.54 Aligned_cols=245 Identities=12% Similarity=0.196 Sum_probs=207.0
Q ss_pred cccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----
Q 008363 79 VSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----- 153 (568)
Q Consensus 79 ~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----- 153 (568)
+...+.....+..+..+.||+|.+. |+.|.. ++|++|+.|.+|+|||+.+++++.++..|..
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVL-CLqyd~------------rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhl 283 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVL-CLQYDE------------RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHL 283 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEE-eeeccc------------eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEE
Confidence 3444444445556667789999666 888864 5899999999999999999999998887765
Q ss_pred -------ccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 154 -------KEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 154 -------~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
++.+.|+.+.+|++.. +...+.||...| ..|+|+ ..+|++++.|.+|++|++.+. ..
T Consensus 284 rf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV-NvVdfd----~kyIVsASgDRTikvW~~st~------ef 352 (499)
T KOG0281|consen 284 RFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV-NVVDFD----DKYIVSASGDRTIKVWSTSTC------EF 352 (499)
T ss_pred EEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe-eeeccc----cceEEEecCCceEEEEeccce------ee
Confidence 6789999999999876 566788999999 999987 469999999999999999977 89
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~ 300 (568)
++++.+|...|.|+.+. + .++++|+.|. |++||+..+ .++..+.+|..-|.++.|. .+.|++|+.||+
T Consensus 353 vRtl~gHkRGIAClQYr--~------rlvVSGSSDntIRlwdi~~G-~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk 421 (499)
T KOG0281|consen 353 VRTLNGHKRGIACLQYR--D------RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK 421 (499)
T ss_pred ehhhhcccccceehhcc--C------eEEEecCCCceEEEEecccc-HHHHHHhchHHhhhheeec--Cceeeeccccce
Confidence 99999999999988754 4 7999999998 999999988 9999999999999999997 678999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
|++||+.....+... ...-|+.++..|++.|..++| |...|++++.|.+|.|||+..+
T Consensus 422 ikvWdl~aaldpra~-------~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAP-------ASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEEEecccccCCccc-------ccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 999999654322111 122356778889999999999 6788999999999999999654
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=9.1e-27 Score=244.46 Aligned_cols=242 Identities=20% Similarity=0.364 Sum_probs=197.2
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
..|....+.++.|+|+| ..|++++.|+.+++|+..... .++.+
T Consensus 155 ~~~~~~sv~~~~fs~~g----------~~l~~~~~~~~i~~~~~~~~~~~~~~~l------------------------- 199 (456)
T KOG0266|consen 155 AGHECPSVTCVDFSPDG----------RALAAASSDGLIRIWKLEGIKSNLLREL------------------------- 199 (456)
T ss_pred cccccCceEEEEEcCCC----------CeEEEccCCCcEEEeecccccchhhccc-------------------------
Confidence 34433345599999999 789999999999999997755 33333
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+|...| ..++|+ |++.++++|+.|++|+|||+... ...++++.+|...|++++|+|.+ +++++|
T Consensus 200 -~~h~~~v-~~~~fs--~d~~~l~s~s~D~tiriwd~~~~-----~~~~~~l~gH~~~v~~~~f~p~g------~~i~Sg 264 (456)
T KOG0266|consen 200 -SGHTRGV-SDVAFS--PDGSYLLSGSDDKTLRIWDLKDD-----GRNLKTLKGHSTYVTSVAFSPDG------NLLVSG 264 (456)
T ss_pred -cccccce-eeeEEC--CCCcEEEEecCCceEEEeeccCC-----CeEEEEecCCCCceEEEEecCCC------CEEEEe
Confidence 7899999 999999 88999999999999999999322 37889999999999999999999 899999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+.|+ |+|||++++ .++..+.+|.+.|++++|++++++|++++.|+.|++||+.. |.. .++..+.
T Consensus 265 s~D~tvriWd~~~~-~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~--------~~~------~~~~~~~ 329 (456)
T KOG0266|consen 265 SDDGTVRIWDVRTG-ECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLET--------GSK------LCLKLLS 329 (456)
T ss_pred cCCCcEEEEeccCC-eEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCC--------Cce------eeeeccc
Confidence 9999 999999986 99999999999999999999999999999999999999954 431 0234666
Q ss_pred cCCCC--EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc--eeeeecccCCCCceEEcccCCCC
Q 008363 333 CSSFA--IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM--HFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 333 ~h~~~--V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~--~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
++... +++++|+|++.+|++++.|+.+++||+..+........+... .+........+..+.++.....+
T Consensus 330 ~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v 403 (456)
T KOG0266|consen 330 GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSV 403 (456)
T ss_pred CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceE
Confidence 66655 999999999999999999999999999988776655444332 12222334555556665544444
No 21
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=2.5e-27 Score=228.99 Aligned_cols=235 Identities=19% Similarity=0.327 Sum_probs=190.1
Q ss_pred cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363 89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF 168 (568)
Q Consensus 89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 168 (568)
.-.+...+.|.+.+. .++++|+.+ .++|+.+..+.|.|||..+....... .+. ..|
T Consensus 114 ~v~i~~~i~h~gEVn-RaRymPQnp---------~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~~------~~P-- 169 (422)
T KOG0264|consen 114 KVEISQKINHDGEVN-RARYMPQNP---------NIVATKTSSGDVYVFDYTKHPSKPKA------SGE------CRP-- 169 (422)
T ss_pred ceEEEEeccCCccch-hhhhCCCCC---------cEEEecCCCCCEEEEEeccCCCcccc------ccc------CCC--
Confidence 345566789999776 999999998 89999999999999999873222111 000 111
Q ss_pred eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
...+.||... +++|.|++...| .|++|+.|++|++||+..... .....+...+.+|+..|..++|++.. .
T Consensus 170 --dl~L~gH~~e-g~glsWn~~~~g-~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h-----~ 240 (422)
T KOG0264|consen 170 --DLRLKGHEKE-GYGLSWNRQQEG-TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH-----E 240 (422)
T ss_pred --ceEEEeeccc-ccccccccccce-eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccc-----h
Confidence 1123788887 499999977665 999999999999999986543 23356777899999999999999986 4
Q ss_pred cEEEEEcCCC-EEEEECCC-CCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 248 NVILTAGHGG-LKFWDIRD-PFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~-~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
.+|+++++|+ +.|||+|+ ...+.....+|.+.|+|++|+|.+. .||+|+.|++|+|||+|++.
T Consensus 241 ~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------- 306 (422)
T KOG0264|consen 241 DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------- 306 (422)
T ss_pred hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--------------
Confidence 8999999999 99999996 3366677889999999999999655 55566779999999999877
Q ss_pred ccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeec
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
++++++.+|...|.+|.|+|.. ..||+++.|+.+.+||+.....++
T Consensus 307 -~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq 353 (422)
T KOG0264|consen 307 -KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ 353 (422)
T ss_pred -cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc
Confidence 6678999999999999999984 899999999999999997655554
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.96 E-value=1e-26 Score=225.08 Aligned_cols=233 Identities=18% Similarity=0.329 Sum_probs=197.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCce
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRF 161 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~ 161 (568)
+-.|.+ .|++++|+..| .+|++++.||++.|||.-++...+.+..+.. +..+.+..
T Consensus 272 l~~Hkg-PI~slKWnk~G----------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~ 340 (524)
T KOG0273|consen 272 LGQHKG-PIFSLKWNKKG----------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGC 340 (524)
T ss_pred hhccCC-ceEEEEEcCCC----------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCce
Confidence 346777 55599999999 8999999999999999999888887766654 34445555
Q ss_pred EEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 162 VKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 162 v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
+.+..+-. ...++.||.+.| .+|.|+ |.|.+|++++.|+|++||..... .+...+.+|+..|+.+.|+|
T Consensus 341 i~V~kv~~~~P~~t~~GH~g~V-~alk~n--~tg~LLaS~SdD~TlkiWs~~~~------~~~~~l~~Hskei~t~~wsp 411 (524)
T KOG0273|consen 341 IHVCKVGEDRPVKTFIGHHGEV-NALKWN--PTGSLLASCSDDGTLKIWSMGQS------NSVHDLQAHSKEIYTIKWSP 411 (524)
T ss_pred EEEEEecCCCcceeeecccCce-EEEEEC--CCCceEEEecCCCeeEeeecCCC------cchhhhhhhccceeeEeecC
Confidence 55544433 556678999999 999999 78999999999999999998866 78889999999999999999
Q ss_pred CCCCCC---CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 240 AESDSD---SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 240 ~~~~~~---~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
.+.... ....+++++.|. |++||+..+ .++..|..|+.+|++|+|+|+|++|++|+.||.|.+|+++
T Consensus 412 ~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~-------- 482 (524)
T KOG0273|consen 412 TGPVTSNPNMNLMLASASFDSTVKLWDVESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK-------- 482 (524)
T ss_pred CCCccCCCcCCceEEEeecCCeEEEEEccCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecccc--------
Confidence 873222 235789999998 999999988 9999999999999999999999999999999999999994
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+|+.+ +.+. ..+.|..|+|+-.|..|..+-.||.+.+.|+.
T Consensus 483 ~~~l~--------~s~~-~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TGKLV--------KSYQ-GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred chhee--------Eeec-CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 46554 4554 44669999999999999999999999999873
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=242.40 Aligned_cols=234 Identities=19% Similarity=0.311 Sum_probs=191.8
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEEC-CCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEV-PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.+|.. .|.+++|+|++ .+|++++.|++|+|||+ ..+.+++++
T Consensus 200 ~~h~~-~v~~~~fs~d~----------~~l~s~s~D~tiriwd~~~~~~~~~~l-------------------------- 242 (456)
T KOG0266|consen 200 SGHTR-GVSDVAFSPDG----------SYLLSGSDDKTLRIWDLKDDGRNLKTL-------------------------- 242 (456)
T ss_pred ccccc-ceeeeEECCCC----------cEEEEecCCceEEEeeccCCCeEEEEe--------------------------
Confidence 68888 55599999999 89999999999999999 445777777
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+|...| ++++|+ |+|+++++|+.|++|+|||+.++ .++..+.+|...|++++|++++ ++|++++
T Consensus 243 ~gH~~~v-~~~~f~--p~g~~i~Sgs~D~tvriWd~~~~------~~~~~l~~hs~~is~~~f~~d~------~~l~s~s 307 (456)
T KOG0266|consen 243 KGHSTYV-TSVAFS--PDGNLLVSGSDDGTVRIWDVRTG------ECVRKLKGHSDGISGLAFSPDG------NLLVSAS 307 (456)
T ss_pred cCCCCce-EEEEec--CCCCEEEEecCCCcEEEEeccCC------eEEEeeeccCCceEEEEECCCC------CEEEEcC
Confidence 8999999 999999 88899999999999999999986 8999999999999999999999 8999999
Q ss_pred CCC-EEEEECCCCCc-ceeeeCCCCCC--eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 255 HGG-LKFWDIRDPFR-PLWDIHPAPKF--IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~-~~~~~~~h~~~--i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
.|+ |++||+.++.. ++..+.++... +++++|+|++.+|++++.|+.+++||++. +.. +..
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~--------~~~--------~~~ 371 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRS--------GKS--------VGT 371 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccC--------Ccc--------eee
Confidence 999 99999998832 45666666555 89999999999999999999999999964 322 357
Q ss_pred EecCCCC---EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 331 VNCSSFA---IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 331 ~~~h~~~---V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
+.+|... +.+...++.+.++++|+.|+.|++|++.++........+........++.+....+++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 372 YTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred ecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 7777764 344455677899999999999999999987665554544323333334444444444443
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.2e-27 Score=222.96 Aligned_cols=233 Identities=16% Similarity=0.288 Sum_probs=208.3
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCC--------------ccCCCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSM--------------KEGTDP 159 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~--------------~~~~~~ 159 (568)
..+|+.+ +.+|+|+..| .+||+++.|=.+.+||+.+ .++++.+.+|.. .+++.|
T Consensus 146 LrGHt~s-v~di~~~a~G----------k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD 214 (406)
T KOG0295|consen 146 LRGHTDS-VFDISFDASG----------KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRD 214 (406)
T ss_pred hhccccc-eeEEEEecCc----------cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccc
Confidence 4689996 5599999999 8999999999999999988 667766666655 688999
Q ss_pred ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
..++.|+..+ |..++.+|...| ..++-+ .||.++|+++.|.+|++|-+.++ .+...++.|.-+|-+++|
T Consensus 215 ~tik~We~~tg~cv~t~~~h~ewv-r~v~v~--~DGti~As~s~dqtl~vW~~~t~------~~k~~lR~hEh~vEci~w 285 (406)
T KOG0295|consen 215 NTIKAWECDTGYCVKTFPGHSEWV-RMVRVN--QDGTIIASCSNDQTLRVWVVATK------QCKAELREHEHPVECIAW 285 (406)
T ss_pred cceeEEecccceeEEeccCchHhE-EEEEec--CCeeEEEecCCCceEEEEEeccc------hhhhhhhccccceEEEEe
Confidence 9999999988 889999999999 999955 99999999999999999999977 788899999999999999
Q ss_pred ccCCCCC---------CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 238 APAESDS---------DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 238 ~p~~~~~---------~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
.|..... ....++++++.|+ |++||+.++ .++.++.+|...|..++|+|.|+||+++.+|+++++||++
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg-~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG-MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLK 364 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCC-eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEec
Confidence 9865211 1236999999999 999999999 9999999999999999999999999999999999999995
Q ss_pred ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+ + +|+.++..|..-|+++.|+.+-.+++||+-|.++++|.-
T Consensus 365 ~--------~--------~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 365 N--------L--------QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred c--------c--------eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 4 3 566789999999999999999999999999999999963
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=3.7e-26 Score=232.25 Aligned_cols=269 Identities=18% Similarity=0.235 Sum_probs=218.0
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCCceEEEee
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDPRFVKLEP 166 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~~~v~~~~ 166 (568)
-+.+.+|++.. ++||+|-..|...||+++...+++.+.-... ..++.-+.+-+|.
T Consensus 267 kvtaa~fH~~t----------~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 267 KVTAAAFHKGT----------NLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred ceeeeeccCCc----------eEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence 45589999888 8999999999999999999888887755432 2233334555555
Q ss_pred cce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363 167 VFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 167 ~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 244 (568)
... +....+||...+ .+++++ |||++||+|+.||+|+|||...+ -|+.+|..|++.|+.+.|+..+
T Consensus 337 WqsEsYVlKQQgH~~~i-~~l~YS--pDgq~iaTG~eDgKVKvWn~~Sg------fC~vTFteHts~Vt~v~f~~~g--- 404 (893)
T KOG0291|consen 337 WQSESYVLKQQGHSDRI-TSLAYS--PDGQLIATGAEDGKVKVWNTQSG------FCFVTFTEHTSGVTAVQFTARG--- 404 (893)
T ss_pred eeccceeeeccccccce-eeEEEC--CCCcEEEeccCCCcEEEEeccCc------eEEEEeccCCCceEEEEEEecC---
Confidence 444 556668999999 999999 99999999999999999999977 8999999999999999999999
Q ss_pred CCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCcc
Q 008363 245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-APKFIYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
+.+++.+-|| |+.||+... +..+++.. .+-...|++..|.|..+++|+.|. .|.+|++ .+|+++
T Consensus 405 ---~~llssSLDGtVRAwDlkRY-rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~--------qTGqll- 471 (893)
T KOG0291|consen 405 ---NVLLSSSLDGTVRAWDLKRY-RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSV--------QTGQLL- 471 (893)
T ss_pred ---CEEEEeecCCeEEeeeeccc-ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEe--------ecCeee-
Confidence 8999999999 999999965 77777753 233457999999999999988875 5999999 568665
Q ss_pred CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC--eeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK--AVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
-.+.||+++|.+++|+|.+..|+++|+|.+|++||+-.. ..|.- .-.-..+..+++|+|..+++.+-.
T Consensus 472 -------DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 472 -------DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred -------ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEec
Confidence 589999999999999999999999999999999999644 22221 112234566899999999999888
Q ss_pred CCCCcccccccccccc
Q 008363 400 DNTPVPLKKTVHDAGE 415 (568)
Q Consensus 400 ~~~~~~~k~~~~~~g~ 415 (568)
+.+.+...+....+|.
T Consensus 542 gqItf~d~~~~~q~~~ 557 (893)
T KOG0291|consen 542 GQITFFDIKEAVQVGS 557 (893)
T ss_pred ceEEEEEhhhceeecc
Confidence 8887765444444433
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.95 E-value=2.1e-28 Score=232.76 Aligned_cols=229 Identities=20% Similarity=0.293 Sum_probs=194.2
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCC
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTD 158 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~ 158 (568)
...+|+. .|+++.|++++ .++++|..+|.|++|+..- +.++.++.+.. +++++
T Consensus 133 ilQaHDs-~Vr~m~ws~~g----------~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~Sd 200 (464)
T KOG0284|consen 133 ILQAHDS-PVRTMKWSHNG----------TWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD 200 (464)
T ss_pred Hhhhhcc-cceeEEEccCC----------CEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecC
Confidence 3468999 77799999999 8999999999999999765 33333333331 67899
Q ss_pred CceEEEeeccee--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 159 PRFVKLEPVFRC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 159 ~~~v~~~~~~~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
|..+++|+...+ ...+.||.-.| .+++|+ |.-.+||+|+.|..|++||.+++ .++.++.+|...|..+.
T Consensus 201 Dg~ikiWdf~~~kee~vL~GHgwdV-ksvdWH--P~kgLiasgskDnlVKlWDprSg------~cl~tlh~HKntVl~~~ 271 (464)
T KOG0284|consen 201 DGTIKIWDFRMPKEERVLRGHGWDV-KSVDWH--PTKGLIASGSKDNLVKLWDPRSG------SCLATLHGHKNTVLAVK 271 (464)
T ss_pred CCeEEEEeccCCchhheeccCCCCc-ceeccC--CccceeEEccCCceeEeecCCCc------chhhhhhhccceEEEEE
Confidence 999999998774 33568999999 999999 66679999999999999999987 89999999999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
|++++ ++|+|+|.|. ++++|+|+. +.++.+++|...|+++.|+|-. ..|.+|+.||.|..|.+..
T Consensus 272 f~~n~------N~Llt~skD~~~kv~DiR~m-kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~------ 338 (464)
T KOG0284|consen 272 FNPNG------NWLLTGSKDQSCKVFDIRTM-KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGL------ 338 (464)
T ss_pred EcCCC------CeeEEccCCceEEEEehhHh-HHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccc------
Confidence 99999 9999999999 999999965 8889999999999999999965 4556678899999999841
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
-+++ ...-.+|...||+++|+|-|.+|++|+.|.++++|.-.
T Consensus 339 --~~p~-------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 339 --EEPL-------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred --cccc-------cCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 1111 11235799999999999999999999999999999763
No 27
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6.3e-26 Score=237.38 Aligned_cols=214 Identities=17% Similarity=0.228 Sum_probs=169.7
Q ss_pred eeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
+.+|.+ .|++++|+| ++ .+||+|+.||+|+|||+.++...... ......
T Consensus 71 l~GH~~-~V~~v~fsP~d~----------~~LaSgS~DgtIkIWdi~~~~~~~~~-------------------~~~l~~ 120 (493)
T PTZ00421 71 LLGQEG-PIIDVAFNPFDP----------QKLFTASEDGTIMGWGIPEEGLTQNI-------------------SDPIVH 120 (493)
T ss_pred EeCCCC-CEEEEEEcCCCC----------CEEEEEeCCCEEEEEecCCCcccccc-------------------CcceEE
Confidence 568998 555999999 66 79999999999999999874321100 001112
Q ss_pred ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
+.+|...| .+++|+ |++ .+|++|+.|++|+|||+.++ ..+..+.+|...|.+++|+|++ .+|++
T Consensus 121 L~gH~~~V-~~l~f~--P~~~~iLaSgs~DgtVrIWDl~tg------~~~~~l~~h~~~V~sla~spdG------~lLat 185 (493)
T PTZ00421 121 LQGHTKKV-GIVSFH--PSAMNVLASAGADMVVNVWDVERG------KAVEVIKCHSDQITSLEWNLDG------SLLCT 185 (493)
T ss_pred ecCCCCcE-EEEEeC--cCCCCEEEEEeCCCEEEEEECCCC------eEEEEEcCCCCceEEEEEECCC------CEEEE
Confidence 37899999 999999 543 69999999999999999876 7778888999999999999999 89999
Q ss_pred EcCCC-EEEEECCCCCcceeeeCCCCCCe-EEEEEcCCCCEEEEEe----CCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFI-YGLDWLPDPGCVILSF----DDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i-~~l~~sp~~~~l~s~~----~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
++.|+ |+|||++++ ..+..+.+|.+.+ ..+.|.+++..|++++ .|+.|++||+++.. .
T Consensus 186 gs~Dg~IrIwD~rsg-~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~---------------~ 249 (493)
T PTZ00421 186 TSKDKKLNIIDPRDG-TIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA---------------S 249 (493)
T ss_pred ecCCCEEEEEECCCC-cEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC---------------C
Confidence 99999 999999987 6777788887654 5788999988888765 37999999997633 2
Q ss_pred ceEEEecC-CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCee
Q 008363 327 GLHLVNCS-SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAV 369 (568)
Q Consensus 327 ~l~~~~~h-~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~ 369 (568)
++.....+ ...+....|++++.+|++++ .|+.|++||+.++..
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 22333333 34566678999999998887 599999999976653
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=9.1e-28 Score=233.17 Aligned_cols=230 Identities=16% Similarity=0.267 Sum_probs=198.3
Q ss_pred EEEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCC--------------cc
Q 008363 92 VVLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSM--------------KE 155 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~--------------~~ 155 (568)
+..+.+|+.++. ++.|.| .+ ++|++++.|+.|+||++.. +.|++++.+|.. .+
T Consensus 207 ~~~~~gH~kgvs-ai~~fp~~~----------hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS 275 (503)
T KOG0282|consen 207 SHNLSGHTKGVS-AIQWFPKKG----------HLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLS 275 (503)
T ss_pred eeeccCCccccc-hhhhcccee----------eEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeee
Confidence 556789999776 999999 55 8999999999999999988 999999999876 67
Q ss_pred CCCCceEEEeecceecccccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
++-|+++++|+..+.......|.+.+++|+.|+ |++ +.+++|+.|+.|+.||++++ +.++.+..|-+.|.+
T Consensus 276 ~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~--pd~~n~fl~G~sd~ki~~wDiRs~------kvvqeYd~hLg~i~~ 347 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH--PDNQNIFLVGGSDKKIRQWDIRSG------KVVQEYDRHLGAILD 347 (503)
T ss_pred eecceeeeeeccccceEEEEEecCCCceeeecC--CCCCcEEEEecCCCcEEEEeccch------HHHHHHHhhhhheee
Confidence 899999999999996666677888888999998 555 79999999999999999988 888899999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-------------------------------------------
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL------------------------------------------- 270 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~------------------------------------------- 270 (568)
|.|-+.+ ..|+++++|+ ++||+.+.+. ++
T Consensus 348 i~F~~~g------~rFissSDdks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 348 ITFVDEG------RRFISSSDDKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred eEEccCC------ceEeeeccCccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 9999999 8999999999 9999987651 11
Q ss_pred ---eeeCCCC--CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec
Q 008363 271 ---WDIHPAP--KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR 345 (568)
Q Consensus 271 ---~~~~~h~--~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp 345 (568)
..+.+|. +.-..+.|||||++|++|..||.+.+||.++ -+. +..+..|..++..+.|+|
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt--------~kl--------~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKT--------TKL--------VSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechh--------hhh--------hhccccCCcceEEEEecC
Confidence 0112443 3446789999999999999999999999954 222 358899999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEE
Q 008363 346 LT-GMVAYCSADGTVHRFQ 363 (568)
Q Consensus 346 ~~-~~l~s~s~Dg~v~iwd 363 (568)
.. ..+|||+.||.|++|+
T Consensus 485 ~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 485 VEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCcceeEecccCceeEecC
Confidence 85 8899999999999996
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=201.00 Aligned_cols=235 Identities=16% Similarity=0.192 Sum_probs=199.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
+....+|.+ .|.+++|+-+| ++.++|+.|.+|++|+.-.+.+++++.+|.. .++.
T Consensus 10 ~~~l~~~qg-aV~avryN~dG----------nY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G 78 (307)
T KOG0316|consen 10 LSILDCAQG-AVRAVRYNVDG----------NYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG 78 (307)
T ss_pred ceeeccccc-ceEEEEEccCC----------CEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCC
Confidence 444567787 66699999999 8999999999999999999999999988765 6788
Q ss_pred CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.|+.+.+|++.+ ....+.+|.+.| .+++|+ .+...+++|+.|.+|++||.++... +|++.+......|.+|
T Consensus 79 gDk~v~vwDV~TGkv~Rr~rgH~aqV-NtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~----ePiQildea~D~V~Si 151 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKVDRRFRGHLAQV-NTVRFN--EESSVVASGSFDSSVRLWDCRSRSF----EPIQILDEAKDGVSSI 151 (307)
T ss_pred CCceEEEEEcccCeeeeeccccccee-eEEEec--CcceEEEeccccceeEEEEcccCCC----CccchhhhhcCceeEE
Confidence 999999999988 556778999999 999999 7888999999999999999998744 8999998888999999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
..+. ..|++|+.|| ++.||+|.+ ....... ..+|++++|++|++++++++.|++|++.|-
T Consensus 152 ~v~~--------heIvaGS~DGtvRtydiR~G-~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk-------- 212 (307)
T KOG0316|consen 152 DVAE--------HEIVAGSVDGTVRTYDIRKG-TLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDK-------- 212 (307)
T ss_pred Eecc--------cEEEeeccCCcEEEEEeecc-eeehhhc--CCcceeEEecCCCCEEEEeeccceeeeccc--------
Confidence 8765 4789999999 999999988 4444444 456999999999999999999999999998
Q ss_pred CCCCCccCccccceEEEecCCCCEEE--EEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWS--VQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~--l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+|+++ ..+.||...-+. .+++.....+++|+.||.|++||+....+..
T Consensus 213 ~tGklL--------~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~s 263 (307)
T KOG0316|consen 213 ETGKLL--------KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQIS 263 (307)
T ss_pred chhHHH--------HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeee
Confidence 468776 588888865443 4566667899999999999999997655443
No 30
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=7.8e-26 Score=229.91 Aligned_cols=209 Identities=16% Similarity=0.305 Sum_probs=181.6
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
++...+|...+. +++++||| .++|+|+.||.|+|||...+-|+.++
T Consensus 343 VlKQQgH~~~i~-~l~YSpDg----------q~iaTG~eDgKVKvWn~~SgfC~vTF----------------------- 388 (893)
T KOG0291|consen 343 VLKQQGHSDRIT-SLAYSPDG----------QLIATGAEDGKVKVWNTQSGFCFVTF----------------------- 388 (893)
T ss_pred eeecccccccee-eEEECCCC----------cEEEeccCCCcEEEEeccCceEEEEe-----------------------
Confidence 444568988566 99999999 89999999999999999999999887
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..|+..| +.+.|+ ..|+.+++.|-||+|+.||+..- +..++|..- .....||+..|.| .++
T Consensus 389 ---teHts~V-t~v~f~--~~g~~llssSLDGtVRAwDlkRY------rNfRTft~P~p~QfscvavD~sG------elV 450 (893)
T KOG0291|consen 389 ---TEHTSGV-TAVQFT--ARGNVLLSSSLDGTVRAWDLKRY------RNFRTFTSPEPIQFSCVAVDPSG------ELV 450 (893)
T ss_pred ---ccCCCce-EEEEEE--ecCCEEEEeecCCeEEeeeeccc------ceeeeecCCCceeeeEEEEcCCC------CEE
Confidence 8899999 999999 88999999999999999999865 777777543 2346789999998 899
Q ss_pred EEEcCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 251 LTAGHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 251 as~s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
..|+.|. |.+|++.++ +.+-.+.+|.++|.+++|+|++..|++++.|.+|++||+-... |. +
T Consensus 451 ~AG~~d~F~IfvWS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~------~~---------v 514 (893)
T KOG0291|consen 451 CAGAQDSFEIFVWSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS------GT---------V 514 (893)
T ss_pred EeeccceEEEEEEEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC------ce---------e
Confidence 9999997 999999999 8899999999999999999999999999999999999994321 21 2
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
.++. +...+..++|+|+|+-|++++.||.|.+||...+..
T Consensus 515 Etl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 515 ETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred eeEe-eccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 3443 667889999999999999999999999999975543
No 31
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4.8e-28 Score=225.58 Aligned_cols=220 Identities=14% Similarity=0.240 Sum_probs=194.6
Q ss_pred CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEEeec
Q 008363 100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPV 167 (568)
Q Consensus 100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~ 167 (568)
..-|+|+.+.. ..+++|..|.+|+|||..+..+++.+++|+. ++|+.|.++++|+.
T Consensus 197 skgVYClQYDD------------~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv 264 (499)
T KOG0281|consen 197 SKGVYCLQYDD------------EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDV 264 (499)
T ss_pred CCceEEEEecc------------hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEec
Confidence 33566888754 3699999999999999999999999999987 78999999999999
Q ss_pred ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.+ ++.++.+|...| +.+.|+ + .++++++.|.+|.+||+.... +..+.+.+.||...|+.+.|+.
T Consensus 265 ~tge~l~tlihHceaV-Lhlrf~---n-g~mvtcSkDrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~------ 330 (499)
T KOG0281|consen 265 NTGEPLNTLIHHCEAV-LHLRFS---N-GYMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD------ 330 (499)
T ss_pred cCCchhhHHhhhccee-EEEEEe---C-CEEEEecCCceeEEEeccCch---HHHHHHHHhhhhhheeeecccc------
Confidence 87 788889999999 999998 4 499999999999999998652 2455667889999999998864
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
++|++++.|. |++|++.+. ..+.++.+|...|.|+.+. ++++++|+.|.+|++||+. .|.
T Consensus 331 --kyIVsASgDRTikvW~~st~-efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~--------~G~------ 391 (499)
T KOG0281|consen 331 --KYIVSASGDRTIKVWSTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIE--------CGA------ 391 (499)
T ss_pred --ceEEEecCCceEEEEeccce-eeehhhhcccccceehhcc--CeEEEecCCCceEEEEecc--------ccH------
Confidence 5999999998 999999988 8999999999999999987 8999999999999999994 464
Q ss_pred ccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
+++.++||+.-|.++.| +.+.|++|+.||+|++||+..+.
T Consensus 392 --cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 392 --CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred --HHHHHhchHHhhhheee--cCceeeeccccceEEEEeccccc
Confidence 45799999999999999 67889999999999999997654
No 32
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=237.57 Aligned_cols=263 Identities=20% Similarity=0.284 Sum_probs=190.0
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec---------------------c----
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL---------------------S---- 151 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~---------------------~---- 151 (568)
+|.+ .||+++|+++| +|||+|+.||.|+||.+..-.....-.+ +
T Consensus 265 ah~g-aIw~mKFS~DG----------KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~ 333 (712)
T KOG0283|consen 265 AHKG-AIWAMKFSHDG----------KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKIS 333 (712)
T ss_pred ccCC-cEEEEEeCCCC----------ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccc
Confidence 6888 88899999999 8999999999999999876111000000 0
Q ss_pred --CC--ccCCCCceEEEeec-ce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee
Q 008363 152 --SM--KEGTDPRFVKLEPV-FR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL 222 (568)
Q Consensus 152 --~~--~~~~~~~~v~~~~~-~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~ 222 (568)
.. ..+.....+.+.+. +. ....+.||++.| +.|.|+ . .++|++++.|.||+||++... .++
T Consensus 334 ~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DI-LDlSWS--K-n~fLLSSSMDKTVRLWh~~~~------~CL 403 (712)
T KOG0283|consen 334 SRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADI-LDLSWS--K-NNFLLSSSMDKTVRLWHPGRK------ECL 403 (712)
T ss_pred ccccccccccCCccccCCCccccccccchhhhhccchhh-eecccc--c-CCeeEeccccccEEeecCCCc------cee
Confidence 00 01111111111110 00 233458999999 999999 4 469999999999999999977 899
Q ss_pred EEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363 223 LCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAM 301 (568)
Q Consensus 223 ~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I 301 (568)
.+| .|...|+||+|+|.. .+||++|+-|+ ||||++... + +.....-..-|++++|.|||++.++|+.+|.+
T Consensus 404 ~~F-~HndfVTcVaFnPvD-----DryFiSGSLD~KvRiWsI~d~-~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C 475 (712)
T KOG0283|consen 404 KVF-SHNDFVTCVAFNPVD-----DRYFISGSLDGKVRLWSISDK-K-VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYC 475 (712)
T ss_pred eEE-ecCCeeEEEEecccC-----CCcEeecccccceEEeecCcC-e-eEeehhhhhhheeEEeccCCceEEEEEeccEE
Confidence 999 799999999999987 49999999999 999999875 3 33333445789999999999999999999999
Q ss_pred EEEEccccccCCCCCCCCccCccccceEEEecC------CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363 302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS------SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h------~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
++|+.+...+. .. ..+..| ...|++++|.|.. ..|++.+.|..|+|||+.+..+.....
T Consensus 476 ~fY~t~~lk~~-------------~~-~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfK 541 (712)
T KOG0283|consen 476 RFYDTEGLKLV-------------SD-FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFK 541 (712)
T ss_pred EEEEccCCeEE-------------Ee-eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhc
Confidence 99999543211 00 111111 1279999999875 457888889999999996655544332
Q ss_pred -CCCcceeeeecccCCCCceEEcccCCCC
Q 008363 375 -RNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 375 -~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
-.....-.-++++.||..|++++-...+
T Consensus 542 G~~n~~SQ~~Asfs~Dgk~IVs~seDs~V 570 (712)
T KOG0283|consen 542 GFRNTSSQISASFSSDGKHIVSASEDSWV 570 (712)
T ss_pred ccccCCcceeeeEccCCCEEEEeecCceE
Confidence 2222233456888899999988755555
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=206.79 Aligned_cols=206 Identities=17% Similarity=0.263 Sum_probs=178.4
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeeccee
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
+....+|.+ .|+.+.|+|+| .+||+|+.|..|.||++.. -+....+
T Consensus 40 ~m~l~gh~g-eI~~~~F~P~g----------s~~aSgG~Dr~I~LWnv~gdceN~~~l---------------------- 86 (338)
T KOG0265|consen 40 IMLLPGHKG-EIYTIKFHPDG----------SCFASGGSDRAIVLWNVYGDCENFWVL---------------------- 86 (338)
T ss_pred hhhcCCCcc-eEEEEEECCCC----------CeEeecCCcceEEEEeccccccceeee----------------------
Confidence 344578888 66699999999 7999999999999999765 2222222
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.+|.+.| +.+.|. ++++.|++++.|.+|+.||++++ +.++.+++|..-|+++.-+..| +.++
T Consensus 87 ----kgHsgAV-M~l~~~--~d~s~i~S~gtDk~v~~wD~~tG------~~~rk~k~h~~~vNs~~p~rrg-----~~lv 148 (338)
T KOG0265|consen 87 ----KGHSGAV-MELHGM--RDGSHILSCGTDKTVRGWDAETG------KRIRKHKGHTSFVNSLDPSRRG-----PQLV 148 (338)
T ss_pred ----cccccee-Eeeeec--cCCCEEEEecCCceEEEEecccc------eeeehhccccceeeecCccccC-----CeEE
Confidence 7999999 999999 89999999999999999999988 8999999999999999855555 5889
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
.|+++|+ ++|||+|+. .++.++. ..-.++++.|..++..+++|+-|+.|++||+|+ + ..++
T Consensus 149 ~SgsdD~t~kl~D~R~k-~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~--------~--------d~~~ 210 (338)
T KOG0265|consen 149 CSGSDDGTLKLWDIRKK-EAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK--------N--------DGLY 210 (338)
T ss_pred EecCCCceEEEEeeccc-chhhccc-cceeEEEEEecccccceeeccccCceeeecccc--------C--------cceE
Confidence 9999999 999999976 6665553 355689999999999999999999999999976 2 3457
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
++.||..+|+.+..+|+|.++.+-+.|.++++||+..
T Consensus 211 ~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 211 TLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred EeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 9999999999999999999999999999999999963
No 34
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=2.1e-27 Score=222.81 Aligned_cols=286 Identities=15% Similarity=0.170 Sum_probs=230.2
Q ss_pred CCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------
Q 008363 86 DIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------ 153 (568)
Q Consensus 86 ~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------ 153 (568)
-...|.+..+.+|..|+- +++=+|... ..+|+|+.||.|+|||+....++.++..|..
T Consensus 53 ~fakPFv~~L~gHrdGV~-~lakhp~~l---------s~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~ 122 (433)
T KOG0268|consen 53 VFAKPFVGSLDGHRDGVS-CLAKHPNKL---------STVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSF 122 (433)
T ss_pred Hhhccchhhccccccccc-hhhcCcchh---------hhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccce
Confidence 345677777889999766 999999875 7899999999999999999999988877764
Q ss_pred ccCCCCceEEEeeccee-cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363 154 KEGTDPRFVKLEPVFRC-SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI 232 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~~-~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 232 (568)
+..++|..++.|.+... ..+..+ ...+ +.++-+ ..+..++|++.+ |.|||.... .|+..+.-....|
T Consensus 123 ~tvgdDKtvK~wk~~~~p~~tilg-~s~~-~gIdh~--~~~~~FaTcGe~--i~IWD~~R~------~Pv~smswG~Dti 190 (433)
T KOG0268|consen 123 FTVGDDKTVKQWKIDGPPLHTILG-KSVY-LGIDHH--RKNSVFATCGEQ--IDIWDEQRD------NPVSSMSWGADSI 190 (433)
T ss_pred EEecCCcceeeeeccCCcceeeec-cccc-cccccc--cccccccccCce--eeecccccC------CccceeecCCCce
Confidence 56778888888875431 111111 1222 445433 445678888754 889998765 7888887778889
Q ss_pred eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
.++.|+|.. ..+|++|+.|+ |.|||+|+. .|+..+. -.-.-+.|+|+|.+-.++++++|..++.||+|.+.
T Consensus 191 ~svkfNpvE-----TsILas~~sDrsIvLyD~R~~-~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~- 262 (433)
T KOG0268|consen 191 SSVKFNPVE-----TSILASCASDRSIVLYDLRQA-SPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS- 262 (433)
T ss_pred eEEecCCCc-----chheeeeccCCceEEEecccC-Cccceee-eeccccceecCccccceeeccccccceehhhhhhc-
Confidence 999999997 38899998888 999999988 6664432 12334789999988788888999999999999876
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDES 391 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (568)
.++..+.+|.++|.+++|+|.|+-+++||.|.+|+||.+..+.....+-..+..+..|..++.|..
T Consensus 263 --------------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsk 328 (433)
T KOG0268|consen 263 --------------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSK 328 (433)
T ss_pred --------------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecccc
Confidence 556799999999999999999999999999999999999988877777778999999999999999
Q ss_pred ceEEcccCCCCCcccccccccccc
Q 008363 392 AITVNTPLDNTPVPLKKTVHDAGE 415 (568)
Q Consensus 392 ~i~~~~~~~~~~~~~k~~~~~~g~ 415 (568)
.|.+|+...++.+....+...+|.
T Consensus 329 yi~SGSdd~nvRlWka~Aseklgv 352 (433)
T KOG0268|consen 329 YIISGSDDGNVRLWKAKASEKLGV 352 (433)
T ss_pred EEEecCCCcceeeeecchhhhcCC
Confidence 999999999998887766555554
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=232.28 Aligned_cols=230 Identities=16% Similarity=0.218 Sum_probs=198.5
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc----eeeEEeccCC---------------c
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR----TMKAIYLSSM---------------K 154 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~----~~~~l~~~~~---------------~ 154 (568)
...+|+. .|.++....+| -+|++|+.|.+|++|.+..+. ++....+|.. +
T Consensus 360 ii~GH~e-~vlSL~~~~~g----------~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffv 428 (775)
T KOG0319|consen 360 IIPGHTE-AVLSLDVWSSG----------DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFV 428 (775)
T ss_pred EEeCchh-heeeeeecccC----------cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEE
Confidence 5679999 45488855555 599999999999999884422 3333344443 7
Q ss_pred cCCCCceEEEeecce-----------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE
Q 008363 155 EGTDPRFVKLEPVFR-----------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL 223 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~-----------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 223 (568)
+++.|.++++|+... +......|...| .||+.+ |+..+||+||.|.+.+||++... ..+.
T Consensus 429 svS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI-N~Vaia--~ndkLiAT~SqDktaKiW~le~~------~l~~ 499 (775)
T KOG0319|consen 429 SVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI-NCVAIA--PNDKLIATGSQDKTAKIWDLEQL------RLLG 499 (775)
T ss_pred EecCCceEEEecCCCcccccccceehhhHHHHhhcccc-cceEec--CCCceEEecccccceeeecccCc------eEEE
Confidence 889999999998765 222445799999 999988 77889999999999999999955 8889
Q ss_pred EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363 224 CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 224 ~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~ 302 (568)
++.+|+..|.+|.|+|.. +++||+|.|+ |+||.+.+. .++.+|.||...|..+.|-.++..|++++.||.|+
T Consensus 500 vLsGH~RGvw~V~Fs~~d------q~laT~SgD~TvKIW~is~f-SClkT~eGH~~aVlra~F~~~~~qliS~~adGliK 572 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKND------QLLATCSGDKTVKIWSISTF-SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIK 572 (775)
T ss_pred EeeCCccceEEEEecccc------ceeEeccCCceEEEEEeccc-eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEE
Confidence 999999999999999998 8999999999 999999987 99999999999999999999999999999999999
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
||++. ++ .|+.++..|+..||+++.++.+.+++||+.||.|.+|.=.+
T Consensus 573 lWnik--------t~--------eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 573 LWNIK--------TN--------ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred EEecc--------ch--------hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 99994 35 45579999999999999999999999999999999996543
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.94 E-value=1.7e-24 Score=243.85 Aligned_cols=270 Identities=15% Similarity=0.201 Sum_probs=204.8
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----c----eeeEEeccC--------------C
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----R----TMKAIYLSS--------------M 153 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~----~~~~l~~~~--------------~ 153 (568)
..|.+ .|++++|+|++ .+||+|+.|+.|+||++... . ....+..+. -
T Consensus 480 ~~~~~-~V~~i~fs~dg----------~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 480 LNSSN-LVCAIGFDRDG----------EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQV 548 (793)
T ss_pred cCCCC-cEEEEEECCCC----------CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEE
Confidence 34777 66699999999 89999999999999997531 1 111111111 1
Q ss_pred ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363 154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 231 (568)
+.++.++.+++|+..+ ....+.+|...| ++++|+|. ++.+|++|+.||+|++||+.++ ..+..+..| ..
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~~~~~H~~~V-~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~------~~~~~~~~~-~~ 619 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVTEMKEHEKRV-WSIDYSSA-DPTLLASGSDDGSVKLWSINQG------VSIGTIKTK-AN 619 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEEEecCCCCCE-EEEEEcCC-CCCEEEEEcCCCEEEEEECCCC------cEEEEEecC-CC
Confidence 4677899999999865 455667999999 99999832 5789999999999999999866 667777654 67
Q ss_pred eeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 232 IRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 232 V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
|.++.|++ ++ .+|++|+.|+ |++||++....++..+.+|...|+++.|. ++.+|++++.|++|+|||++..
T Consensus 620 v~~v~~~~~~g------~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 620 ICCVQFPSESG------RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred eEEEEEeCCCC------CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCC
Confidence 99999965 45 8999999999 99999998755677788999999999997 6889999999999999999642
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc--CC----------CCC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD--HS----------RNR 377 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~--~~----------~~~ 377 (568)
. .+ ....++..+.+|...+.+++|+|++.+|++|+.|+.|++|+......... .. ...
T Consensus 693 ~-----~~-----~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~ 762 (793)
T PLN00181 693 I-----SG-----INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA 762 (793)
T ss_pred c-----cc-----cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCC
Confidence 1 00 01134578999999999999999999999999999999999764321100 00 011
Q ss_pred cceeeeecccCCCCceEEcccCCCC
Q 008363 378 PMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 378 ~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
...+.+..+++++..++.+...+.+
T Consensus 763 ~~~V~~v~ws~~~~~lva~~~dG~I 787 (793)
T PLN00181 763 SQFISSVCWRGQSSTLVAANSTGNI 787 (793)
T ss_pred CcEEEEEEEcCCCCeEEEecCCCcE
Confidence 1234556677777777766655544
No 37
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=228.03 Aligned_cols=220 Identities=15% Similarity=0.197 Sum_probs=164.7
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEee
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEP 166 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~ 166 (568)
..+.+..+.+|.+ .|++++|+|+.+ .+||+|+.||+|+|||+.++.. ...+
T Consensus 63 r~~~v~~L~gH~~-~V~~lafsP~~~---------~lLASgS~DgtIrIWDi~t~~~~~~~i------------------ 114 (568)
T PTZ00420 63 RKPPVIKLKGHTS-SILDLQFNPCFS---------EILASGSEDLTIRVWEIPHNDESVKEI------------------ 114 (568)
T ss_pred CCceEEEEcCCCC-CEEEEEEcCCCC---------CEEEEEeCCCeEEEEECCCCCcccccc------------------
Confidence 3455666789998 555999999743 7999999999999999986422 1110
Q ss_pred cceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 167 VFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
......+.+|...| .+++|+ |++. +|++|+.||+|+|||+.++ ..+..+. |...|.+++|+|+|
T Consensus 115 -~~p~~~L~gH~~~V-~sVaf~--P~g~~iLaSgS~DgtIrIWDl~tg------~~~~~i~-~~~~V~SlswspdG---- 179 (568)
T PTZ00420 115 -KDPQCILKGHKKKI-SIIDWN--PMNYYIMCSSGFDSFVNIWDIENE------KRAFQIN-MPKKLSSLKWNIKG---- 179 (568)
T ss_pred -ccceEEeecCCCcE-EEEEEC--CCCCeEEEEEeCCCeEEEEECCCC------cEEEEEe-cCCcEEEEEECCCC----
Confidence 00111227899999 999999 6665 4679999999999999876 4555554 56789999999999
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEE-----EEEcCCCCEEEEEeCCC----cEEEEEccccccCCCC
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYG-----LDWLPDPGCVILSFDDG----AMRIVSLLKAAYDVPA 315 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~-----l~~sp~~~~l~s~~~dg----~I~lwd~~~~~~~~~~ 315 (568)
.+|++++.|+ |+|||++++ ..+..+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||++...
T Consensus 180 --~lLat~s~D~~IrIwD~Rsg-~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~----- 251 (568)
T PTZ00420 180 --NLLSGTCVGKHMHIIDPRKQ-EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT----- 251 (568)
T ss_pred --CEEEEEecCCEEEEEECCCC-cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----
Confidence 8999999998 999999987 777788899876543 23468999999988764 79999997532
Q ss_pred CCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 316 TGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
++ +..+ ..+.+.+......+++.++++|+.|++|++|++..+.
T Consensus 252 --~p--------l~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 252 --SA--------LVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred --Cc--------eEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 22 3333 3334444444444558899999999999999997653
No 38
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=3.3e-25 Score=225.27 Aligned_cols=271 Identities=17% Similarity=0.181 Sum_probs=217.1
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR 160 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~ 160 (568)
..|..+++. +++|.-... ++||+++..+.+++|++.+..|. .+.+|+. ++++.|.
T Consensus 319 ivG~ndEI~-Dm~~lG~e~---------~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~ 387 (775)
T KOG0319|consen 319 IVGYNDEIL-DMKFLGPEE---------SHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDK 387 (775)
T ss_pred hcCCchhhe-eeeecCCcc---------ceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCc
Confidence 345566455 888864433 79999999999999999997777 6677765 5788999
Q ss_pred eEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC---CceeEEeeCCCCC
Q 008363 161 FVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID---SRPLLCFSADTLP 231 (568)
Q Consensus 161 ~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~~~~h~~~ 231 (568)
.+++|.... |.....||+..| .+|+++.. .-.+|+++|.|++|++|++...+.... ..+..+...|...
T Consensus 388 svilWr~~~~~~~~~~~a~~~gH~~sv-gava~~~~-~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKd 465 (775)
T KOG0319|consen 388 SVILWRLNNNCSKSLCVAQANGHTNSV-GAVAGSKL-GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKD 465 (775)
T ss_pred eEEEEEecCCcchhhhhhhhccccccc-ceeeeccc-CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccc
Confidence 999997622 555667999999 99998733 235899999999999999986322111 1111244579999
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
|++|+++|+. .+|||||.|. .+||++.+. ..+.++.+|...|.++.|+|..+.+++++.|++|+||.+.++
T Consensus 466 IN~Vaia~nd------kLiAT~SqDktaKiW~le~~-~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f- 537 (775)
T KOG0319|consen 466 INCVAIAPND------KLIATGSQDKTAKIWDLEQL-RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF- 537 (775)
T ss_pred ccceEecCCC------ceEEecccccceeeecccCc-eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc-
Confidence 9999999998 8999999999 999999955 888999999999999999999999999999999999999553
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
.|+.+|.||+..|..+.|-.++..|++++.||.|++|++.+...+.....+.-..+.. +.++..
T Consensus 538 ---------------SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL-~~~~~~ 601 (775)
T KOG0319|consen 538 ---------------SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWAL-SVSPLL 601 (775)
T ss_pred ---------------eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEE-eecCcc
Confidence 4678999999999999999999999999999999999999999988777665554442 234444
Q ss_pred CceEEcccCCCC
Q 008363 391 SAITVNTPLDNT 402 (568)
Q Consensus 391 ~~i~~~~~~~~~ 402 (568)
..+..+...+.+
T Consensus 602 ~~~~tgg~Dg~i 613 (775)
T KOG0319|consen 602 DMFVTGGGDGRI 613 (775)
T ss_pred ceeEecCCCeEE
Confidence 455554444444
No 39
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=7.1e-25 Score=198.68 Aligned_cols=222 Identities=18% Similarity=0.314 Sum_probs=177.5
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+.-+|.. .|++++|+|.| ++||+++.|.++.||.-.. .+++.+|
T Consensus 56 ld~~hkr-sVRsvAwsp~g----------~~La~aSFD~t~~Iw~k~~~efecv~~l----------------------- 101 (312)
T KOG0645|consen 56 LDDGHKR-SVRSVAWSPHG----------RYLASASFDATVVIWKKEDGEFECVATL----------------------- 101 (312)
T ss_pred ccccchh-eeeeeeecCCC----------cEEEEeeccceEEEeecCCCceeEEeee-----------------------
Confidence 3347888 77799999999 8999999999999998765 3444444
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.||...| .|++|+ ++|.+||+++.|..|-||.+.... +..+...+..|+..|..+.|+|.. .+|+
T Consensus 102 ---EGHEnEV-K~Vaws--~sG~~LATCSRDKSVWiWe~dedd---Efec~aVL~~HtqDVK~V~WHPt~------dlL~ 166 (312)
T KOG0645|consen 102 ---EGHENEV-KCVAWS--ASGNYLATCSRDKSVWIWEIDEDD---EFECIAVLQEHTQDVKHVIWHPTE------DLLF 166 (312)
T ss_pred ---eccccce-eEEEEc--CCCCEEEEeeCCCeEEEEEecCCC---cEEEEeeeccccccccEEEEcCCc------ceeE
Confidence 8999999 999999 899999999999999999998442 357888999999999999999998 8999
Q ss_pred EEcCCC-EEEEECCCC--CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc-------
Q 008363 252 TAGHGG-LKFWDIRDP--FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA------- 321 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~--~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~------- 321 (568)
|+|+|. |++|+-... ..++.++.+|...|.+++|+|.|..|++++.|++|+||-+...-... ..+..+.
T Consensus 167 S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~-~sr~~Y~v~W~~~~ 245 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM-HSRALYDVPWDNGV 245 (312)
T ss_pred EeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh-cccceEeeeecccc
Confidence 999998 999987622 27789999999999999999999999999999999999843110000 0111110
Q ss_pred --------------------Cccccce-EEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363 322 --------------------GTKQQGL-HLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 322 --------------------~~~~~~l-~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~ 365 (568)
+.....+ ..-..|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus 246 IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 246 IASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred eEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0000001 122367889999999996 6899999999999999874
No 40
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=3.4e-24 Score=210.15 Aligned_cols=262 Identities=19% Similarity=0.295 Sum_probs=209.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR 160 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~ 160 (568)
+.+|.+ .+.+++|+|++ .+|++++.||.|++|++.++.....+..+.. +.++.++
T Consensus 5 ~~~h~~-~i~~~~~~~~~----------~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 73 (289)
T cd00200 5 LKGHTG-GVTCVAFSPDG----------KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDK 73 (289)
T ss_pred hcccCC-CEEEEEEcCCC----------CEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCC
Confidence 347887 56699999998 7999999999999999988765555554433 3455688
Q ss_pred eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363 161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA 238 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 238 (568)
.+.+|+... .......|...+ .++.|+ +++.++++++.||.|.+||+.+. .....+..|...|.+++|+
T Consensus 74 ~i~i~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~i~~~~~~ 144 (289)
T cd00200 74 TIRLWDLETGECVRTLTGHTSYV-SSVAFS--PDGRILSSSSRDKTIKVWDVETG------KCLTTLRGHTDWVNSVAFS 144 (289)
T ss_pred eEEEEEcCcccceEEEeccCCcE-EEEEEc--CCCCEEEEecCCCeEEEEECCCc------EEEEEeccCCCcEEEEEEc
Confidence 888888875 444556788888 999999 66778888888999999999865 7777888899999999999
Q ss_pred cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
|++ .++++++.++ |++||++.. ..+..+..|...|.+++|+|+++.|++++.|+.|++||++. +
T Consensus 145 ~~~------~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~--------~ 209 (289)
T cd00200 145 PDG------TFVASSSQDGTIKLWDLRTG-KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST--------G 209 (289)
T ss_pred CcC------CEEEEEcCCCcEEEEEcccc-ccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC--------C
Confidence 987 7899888777 999999976 66777778888999999999999999999999999999953 3
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
+. +..+..|...|.+++|+|++.++++++.||.|++|++.++........+ .....+..+++++..+.+++
T Consensus 210 ~~--------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 210 KC--------LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred ce--------ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEec
Confidence 23 3466678889999999999888888888999999999876655443322 22345556777766666655
Q ss_pred cCC
Q 008363 398 PLD 400 (568)
Q Consensus 398 ~~~ 400 (568)
...
T Consensus 281 ~d~ 283 (289)
T cd00200 281 ADG 283 (289)
T ss_pred CCC
Confidence 433
No 41
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.8e-25 Score=230.50 Aligned_cols=232 Identities=13% Similarity=0.221 Sum_probs=202.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV 167 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~ 167 (568)
.+..++|+|..| +++++-..|.|++||..-+.++..+..|.. ++|++|-.|++|..
T Consensus 11 RvKglsFHP~rP----------wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 11 RVKGLSFHPKRP----------WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccceecCCCCC----------EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 555899999996 799999999999999999888888877766 89999999999987
Q ss_pred ce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 168 FR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 168 ~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.. |+.++.||-..| .++.|+ +.--+|+++|.|.||+||+..+. +++.++.||...|.|..|+|..
T Consensus 81 k~rrclftL~GHlDYV-Rt~~FH--heyPWIlSASDDQTIrIWNwqsr------~~iavltGHnHYVMcAqFhptE---- 147 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYV-RTVFFH--HEYPWILSASDDQTIRIWNWQSR------KCIAVLTGHNHYVMCAQFHPTE---- 147 (1202)
T ss_pred ccceehhhhcccccee-EEeecc--CCCceEEEccCCCeEEEEeccCC------ceEEEEecCceEEEeeccCCcc----
Confidence 66 999999999999 999999 66679999999999999999987 9999999999999999999987
Q ss_pred CCcEEEEEcCCC-EEEEECCCCC----------------------------cceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 246 SANVILTAGHGG-LKFWDIRDPF----------------------------RPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~----------------------------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
.+++|+|-|. ||+||+..-. ...+.+.+|...|+-++|+|.-..|++|+
T Consensus 148 --DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~ 225 (1202)
T KOG0292|consen 148 --DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGA 225 (1202)
T ss_pred --ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecC
Confidence 8999999998 9999985421 00145679999999999999999999999
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+|+.|++|.+...+ --.+-+..+|...|.++-|+|...+|++.|.|++|+|||++...-.+.
T Consensus 226 DDRqVKlWrmnetK--------------aWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~t 287 (1202)
T KOG0292|consen 226 DDRQVKLWRMNETK--------------AWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQT 287 (1202)
T ss_pred CcceeeEEEecccc--------------ceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceee
Confidence 99999999984311 123457789999999999999999999999999999999986654443
No 42
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-25 Score=221.96 Aligned_cols=231 Identities=13% Similarity=0.197 Sum_probs=199.6
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
++..+.-..-+|++.+|-+.. +++++|++|..|+||+..+++.+..+..|.. .+++
T Consensus 47 mVksfeV~~~PvRa~kfiaRk----------nWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS 116 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARK----------NWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS 116 (794)
T ss_pred eeeeeeecccchhhheeeecc----------ceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC
Confidence 333444444577788898887 8999999999999999999999999988876 6889
Q ss_pred CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
+|-.+++|+-.. |.+++.||+..| ++|+|+|. |.+.+|++|-|++|+||.+.+. .+..++.+|...|+|
T Consensus 117 DDm~iKlW~we~~wa~~qtfeGH~HyV-Mqv~fnPk-D~ntFaS~sLDrTVKVWslgs~------~~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 117 DDMTIKLWDWENEWACEQTFEGHEHYV-MQVAFNPK-DPNTFASASLDRTVKVWSLGSP------HPNFTLEGHEKGVNC 188 (794)
T ss_pred CccEEEEeeccCceeeeeEEcCcceEE-EEEEecCC-CccceeeeeccccEEEEEcCCC------CCceeeeccccCcce
Confidence 999999998765 899999999999 99999976 5579999999999999999877 788899999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
|.|-+.| ...+|+||++|. |+|||.++. .|+.++.+|...|..++|+|.-..|++|+.||+|+||+..+..
T Consensus 189 Vdyy~~g----dkpylIsgaDD~tiKvWDyQtk-~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~--- 260 (794)
T KOG0276|consen 189 VDYYTGG----DKPYLISGADDLTIKVWDYQTK-SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK--- 260 (794)
T ss_pred EEeccCC----CcceEEecCCCceEEEeecchH-HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee---
Confidence 9999877 446999999998 999999987 9999999999999999999999999999999999999985433
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR 361 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i 361 (568)
+ -.++...-..|||++-.+.++.++.|...|.|.+
T Consensus 261 -----l--------E~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 261 -----L--------EKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----h--------hhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 1 1244455678999999998888888887776654
No 43
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.1e-24 Score=211.58 Aligned_cols=250 Identities=17% Similarity=0.197 Sum_probs=198.9
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.|.. .|.+++|+|+| .++|+.+.||.|.|||-.+++.+..|... .+
T Consensus 188 ~Hsk-FV~~VRysPDG----------~~Fat~gsDgki~iyDGktge~vg~l~~~-----------------------~a 233 (603)
T KOG0318|consen 188 EHSK-FVNCVRYSPDG----------SRFATAGSDGKIYIYDGKTGEKVGELEDS-----------------------DA 233 (603)
T ss_pred cccc-ceeeEEECCCC----------CeEEEecCCccEEEEcCCCccEEEEecCC-----------------------CC
Confidence 4555 88899999999 89999999999999999999998887432 68
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-------------------------------------CCC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-------------------------------------IDS 219 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-------------------------------------~~~ 219 (568)
|.+.| ++|+|+ ||+..|++++.|.+++|||+.+..+. .+.
T Consensus 234 HkGsI-falsWs--PDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 234 HKGSI-FALSWS--PDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred ccccE-EEEEEC--CCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCC
Confidence 99999 999999 99999999999999999999876531 223
Q ss_pred ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee----------ee---------------
Q 008363 220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW----------DI--------------- 273 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~----------~~--------------- 273 (568)
.++..+.+|...|++++.++++ .+|.||+.|| |.-||..++..... .+
T Consensus 311 ~~~~~i~GHnK~ITaLtv~~d~------~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 311 SVLKVISGHNKSITALTVSPDG------KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred ChhheecccccceeEEEEcCCC------CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence 3566788999999999999999 8999999999 99999876521100 00
Q ss_pred -----------------------------------------------CCC--------CCCeEEEEEcCCCCEEEEEeCC
Q 008363 274 -----------------------------------------------HPA--------PKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 274 -----------------------------------------------~~h--------~~~i~~l~~sp~~~~l~s~~~d 298 (568)
+.+ .-...+++++|++..++.|+.|
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence 001 0123467888999999999999
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCc
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRP 378 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~ 378 (568)
+.|+||.+.. +.+ ........|.++|++++|||++.|||+|...+.+.+||+.+.......-.--.
T Consensus 465 gkvhvysl~g--------~~l------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHt 530 (603)
T KOG0318|consen 465 GKVHVYSLSG--------DEL------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHT 530 (603)
T ss_pred ceEEEEEecC--------Ccc------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeee
Confidence 9999999942 121 22235667999999999999999999999999999999988766322112234
Q ss_pred ceeeeecccCCCCceEEcccCCCCC
Q 008363 379 MHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 379 ~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
..+.|.++++++..++.++-...+-
T Consensus 531 akI~~~aWsP~n~~vATGSlDt~Vi 555 (603)
T KOG0318|consen 531 AKINCVAWSPNNKLVATGSLDTNVI 555 (603)
T ss_pred eeEEEEEeCCCceEEEeccccceEE
Confidence 5678999999999999887666553
No 44
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-26 Score=204.58 Aligned_cols=209 Identities=18% Similarity=0.303 Sum_probs=180.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+..|..++. ++.|++... ..+++++-||+|+||+...++.++++
T Consensus 97 i~~~kEH~~EV~-Svdwn~~~r---------~~~ltsSWD~TiKLW~~~r~~Sv~Tf----------------------- 143 (311)
T KOG0277|consen 97 IHKFKEHKREVY-SVDWNTVRR---------RIFLTSSWDGTIKLWDPNRPNSVQTF----------------------- 143 (311)
T ss_pred hhHHHhhhhheE-Eeccccccc---------eeEEeeccCCceEeecCCCCcceEee-----------------------
Confidence 455678999666 999999765 67888899999999999998888887
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.||...| +...|+|+. .+++++++.||++++||++.. ++.+. +..|...|.++.|+... +++++
T Consensus 144 ---~gh~~~I-y~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~-----gk~~~-i~ah~~Eil~cdw~ky~-----~~vl~ 207 (311)
T KOG0277|consen 144 ---NGHNSCI-YQAAFSPHI-PNLFASASGDGTLRLWDVRSP-----GKFMS-IEAHNSEILCCDWSKYN-----HNVLA 207 (311)
T ss_pred ---cCCccEE-EEEecCCCC-CCeEEEccCCceEEEEEecCC-----CceeE-EEeccceeEeecccccC-----CcEEE
Confidence 8899999 999999884 469999999999999999866 24444 88999999999999886 58999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
||+.|+ |+.||+|.-..++..+.+|.-.|..+.|||.. ..|++++.|-+++|||..... .++.
T Consensus 208 Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d---------------s~~e 272 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD---------------SAIE 272 (311)
T ss_pred ecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch---------------hhhh
Confidence 999999 99999999888999999999999999999975 466778899999999995422 3345
Q ss_pred EEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEc
Q 008363 330 LVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~ 364 (568)
++..|+.-|..+.|++. +.++|+++.|+.++||+-
T Consensus 273 ~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 273 TVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhccceEEeccccccccCceeeecccccceeeecc
Confidence 77789999999999987 589999999999999984
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=4.8e-25 Score=208.28 Aligned_cols=242 Identities=16% Similarity=0.224 Sum_probs=198.4
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------- 153 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------- 153 (568)
.-|....++.|+. .|.+|.-. + ++|++|+.||.++|||... ++...+.+|..
T Consensus 94 ~aP~pl~~~~hdD-WVSsv~~~--~----------~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~ 159 (423)
T KOG0313|consen 94 TAPKPLQCFLHDD-WVSSVKGA--S----------KWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSS 159 (423)
T ss_pred CCCCccccccchh-hhhhhccc--C----------ceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCcc
Confidence 3455666778888 77677666 3 6899999999999999875 77778888776
Q ss_pred ---ccCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC---------
Q 008363 154 ---KEGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS--------- 215 (568)
Q Consensus 154 ---~~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~--------- 215 (568)
++++.++.+.+|.... +.....||...| -+|+-. ++|..+++|+.|.+|.||+..+...
T Consensus 160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V-~sVsv~--~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~ 236 (423)
T KOG0313|consen 160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSV-DSVSVD--SSGTRFCSGSWDTMLKIWSVETDEEDELESSSNR 236 (423)
T ss_pred ceEEEecCCceEEEEEecCchhhhhHHhHhcccccce-eEEEec--CCCCeEEeecccceeeecccCCCccccccccchh
Confidence 5678999999987654 333445999999 999966 8999999999999999999332211
Q ss_pred ----------CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE
Q 008363 216 ----------SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD 284 (568)
Q Consensus 216 ----------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~ 284 (568)
.....++..+.+|..+|.+|.|++. ..+.+++.|. |+.||+.++ .....+.+ ...++++.
T Consensus 237 rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~-------~v~yS~SwDHTIk~WDletg-~~~~~~~~-~ksl~~i~ 307 (423)
T KOG0313|consen 237 RRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA-------TVIYSVSWDHTIKVWDLETG-GLKSTLTT-NKSLNCIS 307 (423)
T ss_pred hhhhhhhhhcccccCceEEecccccceeeEEEcCC-------CceEeecccceEEEEEeecc-cceeeeec-CcceeEee
Confidence 1234578889999999999999996 5999999998 999999988 55555533 55689999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEE
Q 008363 285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQ 363 (568)
Q Consensus 285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd 363 (568)
++|..++|++|+.|..|+|||.|+.. |..+ .++|.+|...|.++.|+|.. .+|++++.|+++++||
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~------gs~v-------~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGD------GSVV-------SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCC------Ccee-------EEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 99999999999999999999998743 5544 36899999999999999986 7899999999999999
Q ss_pred cCCCe
Q 008363 364 LTAKA 368 (568)
Q Consensus 364 ~~~~~ 368 (568)
+++..
T Consensus 375 vRS~k 379 (423)
T KOG0313|consen 375 VRSTK 379 (423)
T ss_pred eccCC
Confidence 97654
No 46
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=6.1e-25 Score=212.59 Aligned_cols=229 Identities=14% Similarity=0.283 Sum_probs=184.0
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.+|..+. +.++|++... ..|++++.|++|.+||+...... +..+. ....
T Consensus 172 ~L~gH~~eg-~glsWn~~~~---------g~Lls~~~d~~i~lwdi~~~~~~-------------~~~~~------p~~~ 222 (422)
T KOG0264|consen 172 RLKGHEKEG-YGLSWNRQQE---------GTLLSGSDDHTICLWDINAESKE-------------DKVVD------PKTI 222 (422)
T ss_pred EEEeecccc-cccccccccc---------eeEeeccCCCcEEEEeccccccC-------------Ccccc------ceEE
Confidence 457888843 4899999886 79999999999999999873321 00111 1122
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+.+|...| -.++|++... .+|++++.|+.+.|||+++. ..++.....+|++.|+|++|+|.+ ..+||||
T Consensus 223 ~~~h~~~V-eDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~----~~~~~~~~~ah~~~vn~~~fnp~~-----~~ilAT~ 291 (422)
T KOG0264|consen 223 FSGHEDVV-EDVAWHPLHE-DLFGSVGDDGKLMIWDTRSN----TSKPSHSVKAHSAEVNCVAFNPFN-----EFILATG 291 (422)
T ss_pred eecCCcce-ehhhccccch-hhheeecCCCeEEEEEcCCC----CCCCcccccccCCceeEEEeCCCC-----CceEEec
Confidence 38999999 9999998754 69999999999999999963 237778888999999999999997 4899999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCC-CCCCCccCccccceEE
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVP-ATGKPFAGTKQQGLHL 330 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~~~~~~~~l~~ 330 (568)
|.|+ |.|||+|+...++..+.+|...|..|.|+|+.. .|++++.|+.+.+||+.......+ ..++ ......+..
T Consensus 292 S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~---dgppEllF~ 368 (422)
T KOG0264|consen 292 SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE---DGPPELLFI 368 (422)
T ss_pred cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc---cCCcceeEE
Confidence 9998 999999999899999999999999999999765 556678899999999976543211 0000 011244678
Q ss_pred EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363 331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~ 365 (568)
..||...|..+.|+|+. ..|++++.|+.+.||+..
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 88999999999999996 678899999999999985
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=7.8e-25 Score=225.75 Aligned_cols=236 Identities=13% Similarity=0.231 Sum_probs=200.1
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~ 158 (568)
..+..|+| .|+.|+|+|.+ -++++|++|-.|+||+..+.+|+.++.+|-. ++.++
T Consensus 45 ~rFdeHdG-pVRgv~FH~~q----------plFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASD 113 (1202)
T KOG0292|consen 45 DRFDEHDG-PVRGVDFHPTQ----------PLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASD 113 (1202)
T ss_pred hhhhccCC-ccceeeecCCC----------CeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccC
Confidence 34678999 77799999999 4999999999999999999999998888876 78999
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC---C-----------------
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS---S----------------- 216 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~---~----------------- 216 (568)
|++|++|...+ |...+.||...| +|.+|+ |..++++++|-|.+|+|||+..-.. .
T Consensus 114 DQTIrIWNwqsr~~iavltGHnHYV-McAqFh--ptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dL 190 (1202)
T KOG0292|consen 114 DQTIRIWNWQSRKCIAVLTGHNHYV-MCAQFH--PTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDL 190 (1202)
T ss_pred CCeEEEEeccCCceEEEEecCceEE-EeeccC--CccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhh
Confidence 99999999876 888999999999 999999 6667999999999999999863211 0
Q ss_pred ---CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCE
Q 008363 217 ---IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGC 291 (568)
Q Consensus 217 ---~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~ 291 (568)
.+.-....+.||...|+-++|+|.- .+|+||++|. |++|.+.... ..+.+..+|...|.++-|+|....
T Consensus 191 fg~~DaVVK~VLEGHDRGVNwaAfhpTl------pliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 191 FGQTDAVVKHVLEGHDRGVNWAAFHPTL------PLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred cCCcCeeeeeeecccccccceEEecCCc------ceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccce
Confidence 0122335778999999999999998 7999999999 9999987542 345677899999999999999999
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|++.|.|++|++||+.+ ..+++++......-|.++.+|..++++.| .|+-+.+|.++
T Consensus 265 IlSnsEDksirVwDm~k----------------Rt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkle 321 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTK----------------RTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLE 321 (1202)
T ss_pred eEecCCCccEEEEeccc----------------ccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEc
Confidence 99999999999999954 14567888778899999999998866655 57777788774
No 48
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=199.97 Aligned_cols=227 Identities=13% Similarity=0.175 Sum_probs=193.8
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDP 159 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~ 159 (568)
..+|.+.+. .+.|++++ +.|++++.|.+|+.||+++|++.+.+.+|.. .++++|
T Consensus 86 lkgHsgAVM-~l~~~~d~----------s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD 154 (338)
T KOG0265|consen 86 LKGHSGAVM-ELHGMRDG----------SHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD 154 (338)
T ss_pred eccccceeE-eeeeccCC----------CEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC
Confidence 359999555 99999999 8999999999999999999999999988876 578999
Q ss_pred ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
+.+++|++.. +.+++ ...-.+ +++.|. ..++.+.+|+-|+.|++||++.. ..+.++.||...|+.|..
T Consensus 155 ~t~kl~D~R~k~~~~t~-~~kyql-tAv~f~--d~s~qv~sggIdn~ikvWd~r~~------d~~~~lsGh~DtIt~lsl 224 (338)
T KOG0265|consen 155 GTLKLWDIRKKEAIKTF-ENKYQL-TAVGFK--DTSDQVISGGIDNDIKVWDLRKN------DGLYTLSGHADTITGLSL 224 (338)
T ss_pred ceEEEEeecccchhhcc-ccceeE-EEEEec--ccccceeeccccCceeeeccccC------cceEEeecccCceeeEEe
Confidence 9999999985 32222 234456 899999 77889999999999999999876 788999999999999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCC---CcceeeeCCCCCC----eEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDP---FRPLWDIHPAPKF----IYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~---~~~~~~~~~h~~~----i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
++.| .++.+-+-|. +++||++-. .+++..+.+|... ...++|+|+++.+-+|+.|..+++||...
T Consensus 225 s~~g------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~- 297 (338)
T KOG0265|consen 225 SRYG------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS- 297 (338)
T ss_pred ccCC------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc-
Confidence 9999 8999999998 999999843 2556677665432 35789999999999999999999999832
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+ ..+..+.||.+.|.+++|+|...+|.+++.|.+|++=++
T Consensus 298 --------r-------~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 298 --------R-------RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred --------c-------cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 1 335688999999999999999999999999999987443
No 49
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.4e-23 Score=216.55 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=199.8
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceeeEEeccCC------------ccCCCCce
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMKAIYLSSM------------KEGTDPRF 161 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~~l~~~~~------------~~~~~~~~ 161 (568)
..+|++|.. .|+|.|+| .+|++++.||.|++|+.... +.-.++..+.. +.++.+..
T Consensus 9 Ryaht~G~t-~i~~d~~g----------efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~t 77 (933)
T KOG1274|consen 9 RYAHTGGLT-LICYDPDG----------EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNT 77 (933)
T ss_pred hhhccCceE-EEEEcCCC----------CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccce
Confidence 468998877 99999999 79999999999999987653 22222210111 55667777
Q ss_pred EEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 162 VKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 162 v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
+..++.-. ....+...+.++ .+++++ .+|.++|.|+.|-.|++.++... .....+.+|.++|.+|.|+|
T Consensus 78 v~~y~fps~~~~~iL~Rftlp~-r~~~v~--g~g~~iaagsdD~~vK~~~~~D~------s~~~~lrgh~apVl~l~~~p 148 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFTLPI-RDLAVS--GSGKMIAAGSDDTAVKLLNLDDS------SQEKVLRGHDAPVLQLSYDP 148 (933)
T ss_pred EEEeeCCCCCccceeeeeeccc-eEEEEe--cCCcEEEeecCceeEEEEecccc------chheeecccCCceeeeeEcC
Confidence 77666544 233445566777 889988 88999999999999999999866 77888999999999999999
Q ss_pred CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-------C-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-------A-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-------h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
.+ ++||+.+.|| |++||+.++ ....++.+ - ...+..++|+|++..++..+.|+.|.+|+.....
T Consensus 149 ~~------~fLAvss~dG~v~iw~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 149 KG------NFLAVSSCDGKVQIWDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred CC------CEEEEEecCceEEEEEcccc-hhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 99 9999999999 999999977 44333321 1 3456789999999999999999999999985422
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
.. .......|...+..++|+|+|.|||+++.||.|.|||.++.. + ......+.|-++.+.+
T Consensus 222 --------~~------f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~--~---~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 222 --------LQ------FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE--R---HEFKRAVCCEAWKPNA 282 (933)
T ss_pred --------eh------eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch--h---ccccceeEEEecCCCC
Confidence 21 001223344559999999999999999999999999998721 1 2233445566888999
Q ss_pred CceEEcccCCCCCcc
Q 008363 391 SAITVNTPLDNTPVP 405 (568)
Q Consensus 391 ~~i~~~~~~~~~~~~ 405 (568)
+.|.+....+..++.
T Consensus 283 n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 283 NAITLITALGTLGVS 297 (933)
T ss_pred CeeEEEeeccccccC
Confidence 988886665555443
No 50
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-24 Score=215.75 Aligned_cols=227 Identities=18% Similarity=0.330 Sum_probs=192.7
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec-cCC------------ccCCCCceEE
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL-SSM------------KEGTDPRFVK 163 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~-~~~------------~~~~~~~~v~ 163 (568)
.+.. -+.++.|+++| .+||+|..+|.|.|||..+.+.+..+.+ |.. .+|+.++.+.
T Consensus 215 ~~~~-~vtSv~ws~~G----------~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~ 283 (484)
T KOG0305|consen 215 FGEE-LVTSVKWSPDG----------SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKIL 283 (484)
T ss_pred cCCC-ceEEEEECCCC----------CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEE
Confidence 3344 55699999999 8999999999999999999888888777 443 5678888888
Q ss_pred Eeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 164 LEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 164 ~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
.+++.. ......+|...| ..+.|+ +++.+||+|+.|+.+.|||.... .+...+..|.+.|.+++|+|.
T Consensus 284 ~~dvR~~~~~~~~~~~H~qeV-CgLkws--~d~~~lASGgnDN~~~Iwd~~~~------~p~~~~~~H~aAVKA~awcP~ 354 (484)
T KOG0305|consen 284 NHDVRISQHVVSTLQGHRQEV-CGLKWS--PDGNQLASGGNDNVVFIWDGLSP------EPKFTFTEHTAAVKALAWCPW 354 (484)
T ss_pred EEEEecchhhhhhhhccccee-eeeEEC--CCCCeeccCCCccceEeccCCCc------cccEEEeccceeeeEeeeCCC
Confidence 888766 223477999999 999999 99999999999999999999655 788899999999999999999
Q ss_pred CCCCCCCcEEEEEcC--CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEccccccCCCC
Q 008363 241 ESDSDSANVILTAGH--GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS--FDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 241 ~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~~~~~~~~~~ 315 (568)
. ..+||+|+. |+ |++||+.++ ..+..+. -...|.+|.|++..+-|+++ ..++.|.||+...+
T Consensus 355 q-----~~lLAsGGGs~D~~i~fwn~~~g-~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~------ 421 (484)
T KOG0305|consen 355 Q-----SGLLATGGGSADRCIKFWNTNTG-ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM------ 421 (484)
T ss_pred c-----cCceEEcCCCcccEEEEEEcCCC-cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc------
Confidence 7 489999865 67 999999987 5565553 35679999999999888876 33889999999432
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..+..+.+|...|..++++|+|..|++|+.|.++++|++-.
T Consensus 422 ----------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 422 ----------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ----------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 34568999999999999999999999999999999999954
No 51
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=205.20 Aligned_cols=236 Identities=20% Similarity=0.359 Sum_probs=183.0
Q ss_pred cceEEE-eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 89 LPRVVL-CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 89 ~p~~~~-~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.|.+.. .+.|.+. +..++-++.+.. .+.|+-+..|.|+||++.. .++.+... +.........|+
T Consensus 140 ~P~~~~~~i~h~g~-~NRvr~~~~~~~--------~~~aswse~G~V~Vw~l~~--~l~~l~~~----~~~~~~s~~~Pl 204 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGG-INRVRVSRLGNE--------VLCASWSENGRVQVWDLAP--HLNALSEP----GLEVKDSEFRPL 204 (440)
T ss_pred cccccccccccccc-cceeeecccCCc--------ceeeeecccCcEEEEEchh--hhhhhcCc----cccccccccCce
Confidence 455543 4678884 448887776522 6888889999999999976 22221111 111111233444
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
+++ .+|... ++.|+|+|...| .|++|..-+.|++|...++.+..+.. .|.+|+..|-.|+|+|...
T Consensus 205 ~t~----~ghk~E-Gy~LdWSp~~~g-~LlsGDc~~~I~lw~~~~g~W~vd~~---Pf~gH~~SVEDLqWSptE~----- 270 (440)
T KOG0302|consen 205 FTF----NGHKGE-GYGLDWSPIKTG-RLLSGDCVKGIHLWEPSTGSWKVDQR---PFTGHTKSVEDLQWSPTED----- 270 (440)
T ss_pred EEe----cccCcc-ceeeeccccccc-ccccCccccceEeeeeccCceeecCc---cccccccchhhhccCCccC-----
Confidence 444 788877 599999986665 78999989999999999886643333 4557999999999999873
Q ss_pred cEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 248 NVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.+|||||.|+ |+|||+|... .+......|.+.|+.|.|+..-.+|++|++||+++|||+|.+. .|
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~-----~~-------- 337 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFK-----SG-------- 337 (440)
T ss_pred ceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhcc-----CC--------
Confidence 8999999999 9999999873 3444457999999999999998899999999999999999877 34
Q ss_pred cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
+++..|+.|..+|++|.|+|.. ..|+++|.|..|.|||+..
T Consensus 338 ~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 338 QPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 4457999999999999999985 8899999999999999953
No 52
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.5e-24 Score=208.72 Aligned_cols=233 Identities=15% Similarity=0.219 Sum_probs=188.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.++++.|..|| .+||+|...|.|+|||+.+...++.+ .+|+.++
T Consensus 70 ~v~s~~fR~DG----------~LlaaGD~sG~V~vfD~k~r~iLR~~--------------------------~ah~apv 113 (487)
T KOG0310|consen 70 VVYSVDFRSDG----------RLLAAGDESGHVKVFDMKSRVILRQL--------------------------YAHQAPV 113 (487)
T ss_pred ceeEEEeecCC----------eEEEccCCcCcEEEeccccHHHHHHH--------------------------hhccCce
Confidence 67799999999 89999999999999997664444444 7899998
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..+.|+|. ++..|++|+.|+.+++||+.+. .....+.+|+..|+|.+|+|.. +.+++|||+|+ |++
T Consensus 114 -~~~~f~~~-d~t~l~s~sDd~v~k~~d~s~a------~v~~~l~~htDYVR~g~~~~~~-----~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 114 -HVTKFSPQ-DNTMLVSGSDDKVVKYWDLSTA------YVQAELSGHTDYVRCGDISPAN-----DHIVVTGSYDGKVRL 180 (487)
T ss_pred -eEEEeccc-CCeEEEecCCCceEEEEEcCCc------EEEEEecCCcceeEeeccccCC-----CeEEEecCCCceEEE
Confidence 99999865 4568899999999999999977 4556889999999999999986 47999999999 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||+|.....+..+ .|..+|.++.+.|.|..|++++. ..|++||+-. |..+ +..+..|...|+|
T Consensus 181 ~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~--------G~ql-------l~~~~~H~KtVTc 243 (487)
T KOG0310|consen 181 WDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWDLTT--------GGQL-------LTSMFNHNKTVTC 243 (487)
T ss_pred EEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecC--------Ccee-------hhhhhcccceEEE
Confidence 9999875555566 78999999999999998888764 5799999932 3322 2344559999999
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
+++..++..|++++.|+.|++||+.+-++... -..+.|.+ ..++++++..+.+|-..+.+
T Consensus 244 L~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s-~~~~~pvL-siavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 244 LRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS-WKYPGPVL-SIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EEeecCCceEeecccccceEEEEccceEEEEe-eeccccee-eEEecCCCceEEEeccccee
Confidence 99999999999999999999999877666543 22333333 34678888898887554444
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.93 E-value=4.3e-23 Score=202.44 Aligned_cols=255 Identities=18% Similarity=0.218 Sum_probs=193.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-ceee----EEeccCC-------------
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTMK----AIYLSSM------------- 153 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~~----~l~~~~~------------- 153 (568)
...+..|.. .+.-.+|+|.| -++|+|...|.|||||.... ..++ .|.++-.
T Consensus 52 ~~iYtEH~~-~vtVAkySPsG----------~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~a 120 (603)
T KOG0318|consen 52 VDIYTEHAH-QVTVAKYSPSG----------FYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAA 120 (603)
T ss_pred eeeeccccc-eeEEEEeCCCc----------eEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEE
Confidence 455678877 44489999999 79999999999999998773 2222 2222111
Q ss_pred ccCCCCce--EEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363 154 KEGTDPRF--VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 154 ~~~~~~~~--v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 231 (568)
+.....++ +-+|+.-.....+.||...| .+++|-|+.. -++++|+.|++|.+|+=.. .+...++..|+.-
T Consensus 121 vGEGrerfg~~F~~DSG~SvGei~GhSr~i-ns~~~KpsRP-fRi~T~sdDn~v~ffeGPP------FKFk~s~r~HskF 192 (603)
T KOG0318|consen 121 VGEGRERFGHVFLWDSGNSVGEITGHSRRI-NSVDFKPSRP-FRIATGSDDNTVAFFEGPP------FKFKSSFREHSKF 192 (603)
T ss_pred EecCccceeEEEEecCCCccceeeccceeE-eeeeccCCCc-eEEEeccCCCeEEEeeCCC------eeeeecccccccc
Confidence 11112222 33556555666778999999 9999997755 4899999999999998432 2555678889999
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
|+++.|+|+| .+|||++.|+ |.+||-.++ ..+..+. +|.+.|++|+|+||+..+++++.|.+++|||+.
T Consensus 193 V~~VRysPDG------~~Fat~gsDgki~iyDGktg-e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs 265 (603)
T KOG0318|consen 193 VNCVRYSPDG------SRFATAGSDGKIYIYDGKTG-EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS 265 (603)
T ss_pred eeeEEECCCC------CeEEEecCCccEEEEcCCCc-cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence 9999999999 8999999999 999999988 6676776 899999999999999999999999999999985
Q ss_pred ccccC----CCCC--CCCc---c------------------CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 308 KAAYD----VPAT--GKPF---A------------------GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 308 ~~~~~----~~~~--g~~~---~------------------~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
..+-. ...+ .+++ + -.....+.++.||...|+++..+|++.+|++|+.||.|.
T Consensus 266 ~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~ 345 (603)
T KOG0318|consen 266 TNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHIN 345 (603)
T ss_pred ccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEE
Confidence 43210 0000 0000 0 001124567889999999999999999999999999999
Q ss_pred EEEcCCCeeecc
Q 008363 361 RFQLTAKAVEKD 372 (568)
Q Consensus 361 iwd~~~~~~~~~ 372 (568)
-|+..++...+.
T Consensus 346 ~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 346 SWDSGSGTSDRL 357 (603)
T ss_pred EEecCCcccccc
Confidence 999988766543
No 54
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.1e-22 Score=188.94 Aligned_cols=246 Identities=15% Similarity=0.149 Sum_probs=189.7
Q ss_pred CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCCceEE
Q 008363 100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDPRFVK 163 (568)
Q Consensus 100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~~~v~ 163 (568)
.+.+.++.|+++| .+|++++.|.+|+|||..++..++++..... .+...+..|+
T Consensus 14 ~~~i~sl~fs~~G----------~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 14 NGKINSLDFSDDG----------LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred CCceeEEEecCCC----------CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 3356699999999 7999999999999999999999888865533 2334567777
Q ss_pred Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363 164 LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241 (568)
Q Consensus 164 ~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 241 (568)
+-.+.. +++.+.||...| .+|+-+ |-++.+++++.|++|++||++.. ++...+.... -..++|.|.|
T Consensus 84 yLsl~dNkylRYF~GH~~~V-~sL~~s--P~~d~FlS~S~D~tvrLWDlR~~------~cqg~l~~~~--~pi~AfDp~G 152 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRV-NSLSVS--PKDDTFLSSSLDKTVRLWDLRVK------KCQGLLNLSG--RPIAAFDPEG 152 (311)
T ss_pred EEEeecCceEEEcCCCCceE-EEEEec--CCCCeEEecccCCeEEeeEecCC------CCceEEecCC--CcceeECCCC
Confidence 777766 778889999999 999988 77789999999999999999966 5655553323 3457899999
Q ss_pred CCCCCCcEEEEEcCCC-EEEEECCCC-CcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 242 SDSDSANVILTAGHGG-LKFWDIRDP-FRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 242 ~~~~~~~~las~s~d~-v~lwD~~~~-~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
-+||.+.... |+|||+|.- ..|..++. +-....+.|.|+|||++|+.++..+.+++.|. -+
T Consensus 153 ------LifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDA--------f~ 218 (311)
T KOG1446|consen 153 ------LIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDA--------FD 218 (311)
T ss_pred ------cEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEc--------cC
Confidence 7888888876 999999975 34554443 23556789999999999999999999999998 34
Q ss_pred CCCccCccccceEEEecCCCCE---EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAI---WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
|... .++.++...- ...+|+|+++++++|+.||+|.+|+++++...............|..+.+
T Consensus 219 G~~~--------~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 219 GTVK--------STFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred CcEe--------eeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence 6543 5666655332 57789999999999999999999999887655433332333334443333
No 55
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=6.1e-24 Score=222.78 Aligned_cols=229 Identities=18% Similarity=0.275 Sum_probs=201.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceE
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFV 162 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v 162 (568)
+.+|.+ .||++++..-+ .+|++|+.|.+++|||+.+++|...+.+|.. .+|+.|..+
T Consensus 245 l~GH~g-~V~~l~~~~~~----------~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 245 LVGHFG-GVWGLAFPSGG----------DKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTV 313 (537)
T ss_pred ccCCCC-CceeEEEecCC----------CEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccCceEeeccCCceE
Confidence 789999 77799998745 7999999999999999999999999999887 678899999
Q ss_pred EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
++|.+.. ++.+..+|...| .++..+ +.++++|+.||+|++||+.+. +++..+.+|+..|+++.+...
T Consensus 314 kVW~v~n~~~l~l~~~h~~~V-~~v~~~----~~~lvsgs~d~~v~VW~~~~~------~cl~sl~gH~~~V~sl~~~~~ 382 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRGHTGPV-NCVQLD----EPLLVSGSYDGTVKVWDPRTG------KCLKSLSGHTGRVYSLIVDSE 382 (537)
T ss_pred EEEeccCcceEEEeccccccE-EEEEec----CCEEEEEecCceEEEEEhhhc------eeeeeecCCcceEEEEEecCc
Confidence 9999986 777888899999 999965 679999999999999999976 999999999999999988775
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
..+++|+.|+ |++||+++..+++.++.+|...+..+.+. +++|++++.|++|++||.. ++
T Consensus 383 -------~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~--~~~Lvs~~aD~~Ik~WD~~--------~~-- 443 (537)
T KOG0274|consen 383 -------NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLR--DNFLVSSSADGTIKLWDAE--------EG-- 443 (537)
T ss_pred -------ceEEeeeeccceEeecCCchhhhhhhhcCCcccccccccc--cceeEeccccccEEEeecc--------cC--
Confidence 3899999999 99999998767889999999988777655 7899999999999999993 35
Q ss_pred ccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 320 FAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 320 ~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
++++.+.+ |.+.|+.+++. ...+++++.||++++||+.++...+.
T Consensus 444 ------~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 444 ------ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred ------ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 34578887 67899988885 46799999999999999987765554
No 56
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.92 E-value=1.7e-24 Score=202.84 Aligned_cols=196 Identities=17% Similarity=0.265 Sum_probs=167.6
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
......+|.+.| .||++. |...+|++|+.|++|+|||+.++ ++..++.+|-..|..+++++.. .|
T Consensus 143 l~rVi~gHlgWV-r~vavd--P~n~wf~tgs~DrtikIwDlatg------~LkltltGhi~~vr~vavS~rH------pY 207 (460)
T KOG0285|consen 143 LYRVISGHLGWV-RSVAVD--PGNEWFATGSADRTIKIWDLATG------QLKLTLTGHIETVRGVAVSKRH------PY 207 (460)
T ss_pred ehhhhhhccceE-EEEeeC--CCceeEEecCCCceeEEEEcccC------eEEEeecchhheeeeeeecccC------ce
Confidence 344558999999 999988 66789999999999999999988 8888999999999999999998 79
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+.+++.|+ |+.||+... +.++.+++|-..|++++.+|.-..|++|+.|.++++||+|. . ..+
T Consensus 208 lFs~gedk~VKCwDLe~n-kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt--------r--------~~V 270 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLEYN-KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT--------R--------ASV 270 (460)
T ss_pred EEEecCCCeeEEEechhh-hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc--------c--------ceE
Confidence 99999999 999999987 88899999999999999999999999999999999999975 2 346
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
+.+.||..+|.++.+.|....+++||.|++|++||+..++....... -.....|.++.++...+++.++
T Consensus 271 ~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~-hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 271 HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH-HKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec-ccceeeEEecCCchhhhhccCC
Confidence 79999999999999999999999999999999999987765543222 2223344455666666665544
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=2.7e-23 Score=195.65 Aligned_cols=252 Identities=14% Similarity=0.211 Sum_probs=198.9
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.++.+..|.+ .+++++.+|+. +++|+|+.|..-.||++.++.....+
T Consensus 56 S~~tF~~H~~-svFavsl~P~~----------~l~aTGGgDD~AflW~~~~ge~~~el---------------------- 102 (399)
T KOG0296|consen 56 SLVTFDKHTD-SVFAVSLHPNN----------NLVATGGGDDLAFLWDISTGEFAGEL---------------------- 102 (399)
T ss_pred ceeehhhcCC-ceEEEEeCCCC----------ceEEecCCCceEEEEEccCCcceeEe----------------------
Confidence 5677889999 55699999977 79999999999999999998877666
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.+|..+| +++.|+ .+|.+||+|..+|.|+||...++ .....+...-..|--+.|+|.+ .+|
T Consensus 103 ----tgHKDSV-t~~~Fs--hdgtlLATGdmsG~v~v~~~stg------~~~~~~~~e~~dieWl~WHp~a------~il 163 (399)
T KOG0296|consen 103 ----TGHKDSV-TCCSFS--HDGTLLATGDMSGKVLVFKVSTG------GEQWKLDQEVEDIEWLKWHPRA------HIL 163 (399)
T ss_pred ----cCCCCce-EEEEEc--cCceEEEecCCCccEEEEEcccC------ceEEEeecccCceEEEEecccc------cEE
Confidence 8999999 999999 89999999999999999999987 5555554455668889999998 899
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC--C------CC------
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD--V------PA------ 315 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~--~------~~------ 315 (568)
+.|+.|| |.+|.+.+. .....+.+|..++++=.|.|+|+.++++..||+|++|++..-..- . +.
T Consensus 164 lAG~~DGsvWmw~ip~~-~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQ-ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred EeecCCCcEEEEECCCc-ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence 9999999 999999986 667788999999999999999999999999999999997432100 0 00
Q ss_pred ---------------------CCCCcc--------------------------------------------CccccceEE
Q 008363 316 ---------------------TGKPFA--------------------------------------------GTKQQGLHL 330 (568)
Q Consensus 316 ---------------------~g~~~~--------------------------------------------~~~~~~l~~ 330 (568)
+|+.+. ......++.
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~ 322 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRH 322 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhe
Confidence 000000 000011222
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
.-.|..+|+.+.|-+ ..+|++++.||.|++||.+++.+...+..+.. ++++.+++++.+.+...+
T Consensus 323 ~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 323 ICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVS 387 (399)
T ss_pred eccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEec
Confidence 335777888999988 78899999999999999999988887666543 456667777766655443
No 58
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=7.6e-25 Score=202.54 Aligned_cols=231 Identities=17% Similarity=0.257 Sum_probs=193.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
|..|+|++ ++|++|+.||-|.||++.+|+..+.+.-. ..+ .+.-+...| .|
T Consensus 218 cA~FSPDg----------qyLvsgSvDGFiEVWny~~GKlrKDLkYQ------------Aqd------~fMMmd~aV-lc 268 (508)
T KOG0275|consen 218 CARFSPDG----------QYLVSGSVDGFIEVWNYTTGKLRKDLKYQ------------AQD------NFMMMDDAV-LC 268 (508)
T ss_pred heeeCCCC----------ceEeeccccceeeeehhccchhhhhhhhh------------hhc------ceeecccce-EE
Confidence 88999999 89999999999999999998766554211 001 115577888 99
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
+.|+ .|..+||+|+.||.|++|.+.++ .|++.|. +|+..|+++.|+.++ ..+.+++.|. +++.-
T Consensus 269 i~FS--RDsEMlAsGsqDGkIKvWri~tG------~ClRrFdrAHtkGvt~l~FSrD~------SqiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 269 ISFS--RDSEMLASGSQDGKIKVWRIETG------QCLRRFDRAHTKGVTCLSFSRDN------SQILSASFDQTVRIHG 334 (508)
T ss_pred Eeec--ccHHHhhccCcCCcEEEEEEecc------hHHHHhhhhhccCeeEEEEccCc------chhhcccccceEEEec
Confidence 9999 89999999999999999999988 8999886 899999999999999 7899999998 99999
Q ss_pred CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEE
Q 008363 263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWS 340 (568)
Q Consensus 263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~ 340 (568)
+.++ +++..+.+|...|+...|.+||.++++++.||+|++|+.. ++++ +.+|+ +...+|.+
T Consensus 335 lKSG-K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~K--------tteC--------~~Tfk~~~~d~~vns 397 (508)
T KOG0275|consen 335 LKSG-KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGK--------TTEC--------LSTFKPLGTDYPVNS 397 (508)
T ss_pred cccc-hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCc--------chhh--------hhhccCCCCccccee
Confidence 9988 9999999999999999999999999999999999999994 4544 45555 34568888
Q ss_pred EEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCC-CcceeeeecccCCCCceEE
Q 008363 341 VQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRN-RPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 341 l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~i~~ 395 (568)
+..-|.. ..++.|....+|+|.++....+....+.. ....|.+..+++.|+-+..
T Consensus 398 v~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 398 VILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred EEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 8888875 78999999999999999876655543433 3457888889998887654
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.92 E-value=3.7e-23 Score=185.28 Aligned_cols=218 Identities=16% Similarity=0.262 Sum_probs=181.6
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT 157 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~ 157 (568)
.+..+.+|+..+. +|.|.-+| +++++|+.||+++|||+....+.+.+..... +++.
T Consensus 75 Pv~t~e~h~kNVt-aVgF~~dg----------rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 75 PVATFEGHTKNVT-AVGFQCDG----------RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceeEEeccCCceE-EEEEeecC----------eEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeec
Confidence 3556789988555 99999999 8999999999999999999777666544322 6788
Q ss_pred CCceEEEeecce--eccccc-CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 158 DPRFVKLEPVFR--CSMLKC-GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~-~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
.++.|++|++.. |...+. .....| .++... ++|.+++.+..-|...+|++-.........++..|++|++.+..
T Consensus 144 qsg~irvWDl~~~~c~~~liPe~~~~i-~sl~v~--~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~ 220 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHELIPEDDTSI-QSLTVM--PDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILR 220 (311)
T ss_pred CCCcEEEEEccCCccccccCCCCCcce-eeEEEc--CCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEE
Confidence 999999999876 333222 233556 778866 89999999999999999999876665667888999999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
+.++|++ ++||++|.|. ++||++.+-.+....+.+|...+..++||.||+||++++.|+.+++||+..
T Consensus 221 C~lSPd~------k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~----- 289 (311)
T KOG0315|consen 221 CLLSPDV------KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSA----- 289 (311)
T ss_pred EEECCCC------cEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeeccccc-----
Confidence 9999999 9999999998 999999977555577889999999999999999999999999999999954
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVS 344 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s 344 (568)
|+. ++.+.+|..+..|++..
T Consensus 290 ---~k~--------v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 290 ---GKE--------VRQYQGHHKAAVCVALN 309 (311)
T ss_pred ---Cce--------eeecCCcccccEEEEee
Confidence 544 36888988877776653
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=7.7e-24 Score=200.18 Aligned_cols=226 Identities=14% Similarity=0.231 Sum_probs=173.5
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+.||...+. +|...+++ ..+++|+.|.+|.||+... .....+.............-+.....+...++
T Consensus 189 ~~GHk~~V~-sVsv~~sg----------tr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 189 CRGHKRSVD-SVSVDSSG----------TRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred hccccccee-EEEecCCC----------CeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccCceEEe
Confidence 459999666 99999999 8999999999999999443 11111111111000000000111111133345
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.||+.+| .+|.|+ + ...+.+++.|.+|+.||+.++ .....+.+ ...++++..+|.. ++||+|+
T Consensus 257 ~GHt~~V-s~V~w~--d-~~v~yS~SwDHTIk~WDletg------~~~~~~~~-~ksl~~i~~~~~~------~Ll~~gs 319 (423)
T KOG0313|consen 257 EGHTEPV-SSVVWS--D-ATVIYSVSWDHTIKVWDLETG------GLKSTLTT-NKSLNCISYSPLS------KLLASGS 319 (423)
T ss_pred cccccce-eeEEEc--C-CCceEeecccceEEEEEeecc------cceeeeec-CcceeEeeccccc------ceeeecC
Confidence 8999999 999999 3 579999999999999999987 56666544 5668999999988 8999999
Q ss_pred CCC-EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 255 HGG-LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
.|. |++||.|++.. ....+.+|...|.++.|+|...+ |++++.|+++++||+|... .++..
T Consensus 320 sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k---------------~plyd 384 (423)
T KOG0313|consen 320 SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK---------------APLYD 384 (423)
T ss_pred CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC---------------Cccee
Confidence 999 99999998753 34778899999999999997665 5567889999999998744 45679
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+.+|...|.++.|.. +.+|++||.|.+|+|+...
T Consensus 385 I~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 999999999999974 6789999999999999763
No 61
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=3e-23 Score=195.33 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=191.5
Q ss_pred CCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------
Q 008363 87 IALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------- 153 (568)
Q Consensus 87 ~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------- 153 (568)
..-+.+..+.+|...++ ++.|+.++ .+||+|..+|.|+||...++.....+...-.
T Consensus 94 ~~ge~~~eltgHKDSVt-~~~Fshdg----------tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~i 162 (399)
T KOG0296|consen 94 STGEFAGELTGHKDSVT-CCSFSHDG----------TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHI 162 (399)
T ss_pred cCCcceeEecCCCCceE-EEEEccCc----------eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccE
Confidence 33446667889999666 99999999 8999999999999999999877776642111
Q ss_pred -ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC--------------
Q 008363 154 -KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-------------- 216 (568)
Q Consensus 154 -~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-------------- 216 (568)
+.|+.++.+-.|.+-. ..+.+.||..++ ++=.|. |+|..+++|+.||+|++|++.++.+.
T Consensus 163 llAG~~DGsvWmw~ip~~~~~kv~~Gh~~~c-t~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~ 239 (399)
T KOG0296|consen 163 LLAGSTDGSVWMWQIPSQALCKVMSGHNSPC-TCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCI 239 (399)
T ss_pred EEeecCCCcEEEEECCCcceeeEecCCCCCc-cccccc--CCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcc
Confidence 6788999999888766 567788999997 999988 88999999999999999999877431
Q ss_pred -----------------------CCCceeEEee--------CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363 217 -----------------------IDSRPLLCFS--------ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR 264 (568)
Q Consensus 217 -----------------------~~~~~~~~~~--------~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~ 264 (568)
..++.+..+. .|...+.+|.|.|.. ..-.++|+|+-|| |.|||+.
T Consensus 240 ~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s---s~lpL~A~G~vdG~i~iyD~a 316 (399)
T KOG0296|consen 240 SLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS---SKLPLAACGSVDGTIAIYDLA 316 (399)
T ss_pred ccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc---cccchhhcccccceEEEEecc
Confidence 0111111111 122233344443332 1125788899999 9999998
Q ss_pred CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363 265 DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS 344 (568)
Q Consensus 265 ~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s 344 (568)
.. .++..-.|...|..+.|.+ ..+|++++.+|.|+.||.| +|++ +.++.||...|.+++++
T Consensus 317 ~~--~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaR--------tG~l--------~~~y~GH~~~Il~f~ls 377 (399)
T KOG0296|consen 317 AS--TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDAR--------TGQL--------KFTYTGHQMGILDFALS 377 (399)
T ss_pred cc--hhheeccCCCceEEEEEcC-cchheeeccCceEEeeecc--------ccce--------EEEEecCchheeEEEEc
Confidence 64 4455558899999999998 7899999999999999996 4755 47999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEEcC
Q 008363 345 RLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 345 p~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|+.++++|+|.|++.+||++.
T Consensus 378 ~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 378 PQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999873
No 62
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.92 E-value=1.8e-22 Score=197.92 Aligned_cols=228 Identities=19% Similarity=0.328 Sum_probs=188.8
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~ 158 (568)
.....|.. .+..+.|+|++ .+|++++.||.|++|++.+++.+..+..+.. +.+..
T Consensus 45 ~~~~~~~~-~i~~~~~~~~~----------~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 113 (289)
T cd00200 45 RTLKGHTG-PVRDVAASADG----------TYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113 (289)
T ss_pred EEEecCCc-ceeEEEECCCC----------CEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecC
Confidence 34456777 44599999998 7999999999999999998766666655542 23444
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
+..+.+|+... .......|...+ .+++|+ +++.++++++.||.|++||+... +++..+..|...|.++.
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~~~~i~i~d~~~~------~~~~~~~~~~~~i~~~~ 184 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGHTDWV-NSVAFS--PDGTFVASSSQDGTIKLWDLRTG------KCVATLTGHTGEVNSVA 184 (289)
T ss_pred CCeEEEEECCCcEEEEEeccCCCcE-EEEEEc--CcCCEEEEEcCCCcEEEEEcccc------ccceeEecCccccceEE
Confidence 77888888753 444455788888 999999 66788888888999999999865 67778888999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
|+|++ ..|++++.++ |++||++.. ..+..+..|...+.+++|+|++.++++++.||.|++||+..
T Consensus 185 ~~~~~------~~l~~~~~~~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~------- 250 (289)
T cd00200 185 FSPDG------EKLLSSSSDGTIKLWDLSTG-KCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRT------- 250 (289)
T ss_pred ECCCc------CEEEEecCCCcEEEEECCCC-ceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCC-------
Confidence 99998 7888888888 999999976 66777778888999999999988888888899999999953
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
++ .+..+..|...|.+++|+|++.+|++++.||.|++|+
T Consensus 251 -~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 251 -GE--------CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred -ce--------eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 32 2356778999999999999999999999999999996
No 63
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=8.8e-23 Score=188.80 Aligned_cols=206 Identities=14% Similarity=0.227 Sum_probs=161.9
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.+..+.+|.+ .+.+++.+ + .++|+|+.|-+|+|||++....+..+
T Consensus 35 ~lF~~~aH~~-sitavAVs--~----------~~~aSGssDetI~IYDm~k~~qlg~l---------------------- 79 (362)
T KOG0294|consen 35 PLFAFSAHAG-SITALAVS--G----------PYVASGSSDETIHIYDMRKRKQLGIL---------------------- 79 (362)
T ss_pred cccccccccc-ceeEEEec--c----------eeEeccCCCCcEEEEeccchhhhcce----------------------
Confidence 3455678999 55488886 4 58999999999999999997766665
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..|.+.| +++.|.+.....+|++|+.||.|.+|+... ..++..+++|.+.|+.|+.+|.+ ++-
T Consensus 80 ----l~Hagsi-taL~F~~~~S~shLlS~sdDG~i~iw~~~~------W~~~~slK~H~~~Vt~lsiHPS~------KLA 142 (362)
T KOG0294|consen 80 ----LSHAGSI-TALKFYPPLSKSHLLSGSDDGHIIIWRVGS------WELLKSLKAHKGQVTDLSIHPSG------KLA 142 (362)
T ss_pred ----eccccce-EEEEecCCcchhheeeecCCCcEEEEEcCC------eEEeeeecccccccceeEecCCC------ceE
Confidence 7789999 999998443334999999999999999874 38999999999999999999999 888
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC---------------------------------------C
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP---------------------------------------G 290 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~---------------------------------------~ 290 (568)
++.+.|+ +++||+-.+. ....+. -...-+.|.|+|.| .
T Consensus 143 LsVg~D~~lr~WNLV~Gr-~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~ 220 (362)
T KOG0294|consen 143 LSVGGDQVLRTWNLVRGR-VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGS 220 (362)
T ss_pred EEEcCCceeeeehhhcCc-cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCc
Confidence 8999998 9999997763 222111 01112335555544 5
Q ss_pred EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe--cCCCEEEEEeCCCeEEEEEcCC
Q 008363 291 CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS--RLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 291 ~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s--p~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|++|++|+.|.+||... + .++..+.+|...|-++.+- |++.+|+|+|.||.|++||++.
T Consensus 221 ~L~vG~d~~~i~~~D~ds--------~--------~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~ 282 (362)
T KOG0294|consen 221 ELLVGGDNEWISLKDTDS--------D--------TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDM 282 (362)
T ss_pred eEEEecCCceEEEeccCC--------C--------ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccc
Confidence 677788888888888743 2 4457899999999998854 4578999999999999999954
No 64
>PTZ00421 coronin; Provisional
Probab=99.91 E-value=3.1e-22 Score=209.69 Aligned_cols=208 Identities=15% Similarity=0.181 Sum_probs=159.3
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..+++++.+..+..|+...+..+..+.. .|..+ .....+.+|.+.| ++++|+|. ++.+|++|+.|
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~~----~G~~~---------~~~~~l~GH~~~V-~~v~fsP~-d~~~LaSgS~D 97 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHTD----YGKLA---------SNPPILLGQEGPI-IDVAFNPF-DPQKLFTASED 97 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeeccc----cccCC---------CCCceEeCCCCCE-EEEEEcCC-CCCEEEEEeCC
Confidence 4577778888888888766433221100 00000 0011237999999 99999932 67899999999
Q ss_pred CeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe
Q 008363 203 GTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI 280 (568)
Q Consensus 203 g~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i 280 (568)
|+|+|||+...... ....++..+.+|...|.+|+|+|.+ .++|++++.|+ |+|||+.++ ..+..+.+|...|
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-----~~iLaSgs~DgtVrIWDl~tg-~~~~~l~~h~~~V 171 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-----MNVLASAGADMVVNVWDVERG-KAVEVIKCHSDQI 171 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-----CCEEEEEeCCCEEEEEECCCC-eEEEEEcCCCCce
Confidence 99999999754221 1124677889999999999999985 26999999999 999999987 7778888999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC-EEEEEEecCCCEEEEEe----C
Q 008363 281 YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA-IWSVQVSRLTGMVAYCS----A 355 (568)
Q Consensus 281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~-V~~l~~sp~~~~l~s~s----~ 355 (568)
++++|+|++.+|++++.|++|+|||++. ++. +..+.+|.+. +..+.|.+++..|++++ .
T Consensus 172 ~sla~spdG~lLatgs~Dg~IrIwD~rs--------g~~--------v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~ 235 (493)
T PTZ00421 172 TSLEWNLDGSLLCTTSKDKKLNIIDPRD--------GTI--------VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQ 235 (493)
T ss_pred EEEEEECCCCEEEEecCCCEEEEEECCC--------CcE--------EEEEecCCCCcceEEEEcCCCCeEEEEecCCCC
Confidence 9999999999999999999999999964 433 3577888765 45678999887777765 4
Q ss_pred CCeEEEEEcCCC
Q 008363 356 DGTVHRFQLTAK 367 (568)
Q Consensus 356 Dg~v~iwd~~~~ 367 (568)
|+.|++||+...
T Consensus 236 Dr~VklWDlr~~ 247 (493)
T PTZ00421 236 QRQIMLWDTRKM 247 (493)
T ss_pred CCeEEEEeCCCC
Confidence 799999999754
No 65
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=2.2e-23 Score=191.98 Aligned_cols=234 Identities=15% Similarity=0.273 Sum_probs=177.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
..+...|.+ ++++.+|+|+| .++|+|+.|-+|+|.|++..-... ......++.... -.| ..
T Consensus 105 t~ylt~HK~-~cR~aafs~DG----------~lvATGsaD~SIKildvermlaks--~~~em~~~~~qa---~hP---vI 165 (430)
T KOG0640|consen 105 TKYLTSHKS-PCRAAAFSPDG----------SLVATGSADASIKILDVERMLAKS--KPKEMISGDTQA---RHP---VI 165 (430)
T ss_pred eEEEeeccc-ceeeeeeCCCC----------cEEEccCCcceEEEeehhhhhhhc--chhhhccCCccc---CCc---eE
Confidence 344567888 66699999999 899999999999999998411000 000000111100 011 23
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.++..|...| .+++|+ |...+|++|+.|++|++||+..... .+....| ....+|.+|.|+|.| .+|+
T Consensus 166 RTlYDH~dev-n~l~FH--Pre~ILiS~srD~tvKlFDfsK~sa---KrA~K~~-qd~~~vrsiSfHPsG------efll 232 (430)
T KOG0640|consen 166 RTLYDHVDEV-NDLDFH--PRETILISGSRDNTVKLFDFSKTSA---KRAFKVF-QDTEPVRSISFHPSG------EFLL 232 (430)
T ss_pred eehhhccCcc-cceeec--chhheEEeccCCCeEEEEecccHHH---HHHHHHh-hccceeeeEeecCCC------ceEE
Confidence 4458999999 999999 7788999999999999999974421 1222233 346789999999999 8998
Q ss_pred EEcCCC-EEEEECCCCCcceeee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
.|.+.- +++||+.+- ++...- ..|.+.|+++.+++.++..++++.||.|+|||- +.++++
T Consensus 233 vgTdHp~~rlYdv~T~-QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG--------VS~rCv------- 296 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTY-QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG--------VSNRCV------- 296 (430)
T ss_pred EecCCCceeEEeccce-eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecc--------ccHHHH-------
Confidence 888877 999999976 655333 378999999999999999999999999999997 345443
Q ss_pred eEEEe-cCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363 328 LHLVN-CSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 328 l~~~~-~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
.++. .|. ..|.+..|..+++||++.+.|..|++|++.+++..+.+.
T Consensus 297 -~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 297 -RTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred -HHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 4443 454 579999999999999999999999999999988776654
No 66
>PTZ00420 coronin; Provisional
Probab=99.91 E-value=3.9e-22 Score=209.86 Aligned_cols=188 Identities=16% Similarity=0.231 Sum_probs=147.4
Q ss_pred EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEE
Q 008363 128 LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVAL 207 (568)
Q Consensus 128 ~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i 207 (568)
|+.++.|+||+......+..+ .+|...| ++++|+|. ++.+|++|+.||+|+|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L--------------------------~gH~~~V-~~lafsP~-~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKL--------------------------KGHTSSI-LDLQFNPC-FSEILASGSEDLTIRV 101 (568)
T ss_pred CCceeEEEeeecCCCceEEEE--------------------------cCCCCCE-EEEEEcCC-CCCEEEEEeCCCeEEE
Confidence 556778888887665444444 8899999 99999933 2679999999999999
Q ss_pred EEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE
Q 008363 208 WKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD 284 (568)
Q Consensus 208 wd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~ 284 (568)
||+.+.... ....++..+.+|...|.+|+|+|++. .+|++++.|+ |+|||++++ ..+..+. |...|.+++
T Consensus 102 WDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~-----~iLaSgS~DgtIrIWDl~tg-~~~~~i~-~~~~V~Sls 174 (568)
T PTZ00420 102 WEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNY-----YIMCSSGFDSFVNIWDIENE-KRAFQIN-MPKKLSSLK 174 (568)
T ss_pred EECCCCCccccccccceEEeecCCCcEEEEEECCCCC-----eEEEEEeCCCeEEEEECCCC-cEEEEEe-cCCcEEEEE
Confidence 999754210 01134567889999999999999872 4678999998 999999987 5555554 567899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-----EEEecCCCEEEEEeCCC--
Q 008363 285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-----VQVSRLTGMVAYCSADG-- 357 (568)
Q Consensus 285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-----l~~sp~~~~l~s~s~Dg-- 357 (568)
|+|+|.+|++++.|+.|+|||++. ++. +..+.+|.+.+.+ ..|++++.+|++++.|+
T Consensus 175 wspdG~lLat~s~D~~IrIwD~Rs--------g~~--------i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~ 238 (568)
T PTZ00420 175 WNIKGNLLSGTCVGKHMHIIDPRK--------QEI--------ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN 238 (568)
T ss_pred ECCCCCEEEEEecCCEEEEEECCC--------CcE--------EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC
Confidence 999999999999999999999964 433 4678889876433 34568889999988775
Q ss_pred --eEEEEEcCC
Q 008363 358 --TVHRFQLTA 366 (568)
Q Consensus 358 --~v~iwd~~~ 366 (568)
.|+|||+..
T Consensus 239 ~R~VkLWDlr~ 249 (568)
T PTZ00420 239 MREMKLWDLKN 249 (568)
T ss_pred ccEEEEEECCC
Confidence 799999984
No 67
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=5.3e-24 Score=217.45 Aligned_cols=200 Identities=23% Similarity=0.432 Sum_probs=167.6
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
+|+|..... ++||+++..|.|.+||+... ..+. .+..|...+
T Consensus 92 DVkW~~~~~---------NlIAT~s~nG~i~vWdlnk~~rnk~l~--------------------------~f~EH~Rs~ 136 (839)
T KOG0269|consen 92 DVKWGQLYS---------NLIATCSTNGVISVWDLNKSIRNKLLT--------------------------VFNEHERSA 136 (839)
T ss_pred hcccccchh---------hhheeecCCCcEEEEecCccccchhhh--------------------------Hhhhhccce
Confidence 788885443 79999999999999999872 2222 237899999
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.+++|++... .+|++|+.||+|++||++.. ....++.+....|++|+|+|.. ++.|+++.+.| |.+
T Consensus 137 -~~ldfh~tep-~iliSGSQDg~vK~~DlR~~------~S~~t~~~nSESiRDV~fsp~~-----~~~F~s~~dsG~lql 203 (839)
T KOG0269|consen 137 -NKLDFHSTEP-NILISGSQDGTVKCWDLRSK------KSKSTFRSNSESIRDVKFSPGY-----GNKFASIHDSGYLQL 203 (839)
T ss_pred -eeeeeccCCc-cEEEecCCCceEEEEeeecc------cccccccccchhhhceeeccCC-----CceEEEecCCceEEE
Confidence 9999997744 69999999999999999977 6667777888999999999986 58999999999 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||+|.+.++...+..|.++|.++.|+|++.+|++||.|+.|+|||... ++. .+++++. ...+|..
T Consensus 204 WDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~--------~~~------~~~~tIn-Tiapv~r 268 (839)
T KOG0269|consen 204 WDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD--------SRA------KPKHTIN-TIAPVGR 268 (839)
T ss_pred eeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC--------CCc------cceeEEe-ecceeee
Confidence 999999899999999999999999999999999999999999999942 222 2334443 4478999
Q ss_pred EEEecCC-CEEEEEe--CCCeEEEEEcCCC
Q 008363 341 VQVSRLT-GMVAYCS--ADGTVHRFQLTAK 367 (568)
Q Consensus 341 l~~sp~~-~~l~s~s--~Dg~v~iwd~~~~ 367 (568)
|.|-|.. ..|++++ .|-.|+|||+...
T Consensus 269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRP 298 (839)
T KOG0269|consen 269 VKWRPARSYHLATCSMVVDTSVHVWDVRRP 298 (839)
T ss_pred eeeccCccchhhhhhccccceEEEEeeccc
Confidence 9999985 6677776 5788999999644
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.91 E-value=2.7e-22 Score=225.92 Aligned_cols=231 Identities=15% Similarity=0.184 Sum_probs=181.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC---------------ccCCCCceEEEee
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------KEGTDPRFVKLEP 166 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------~~~~~~~~v~~~~ 166 (568)
.+.+++|+|... .+||+++.||+|+|||+.+++.+..+.+|.. ++++.++.+++|+
T Consensus 534 ~v~~l~~~~~~~---------~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd 604 (793)
T PLN00181 534 KLSGICWNSYIK---------SQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWS 604 (793)
T ss_pred ceeeEEeccCCC---------CEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEE
Confidence 455999998643 7999999999999999999888777766543 5678899999999
Q ss_pred cce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363 167 VFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 167 ~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 244 (568)
... +......+ ..+ .++.|++ ++|.+|++|+.||+|++||++.. ..++..+.+|...|.++.|. ++
T Consensus 605 ~~~~~~~~~~~~~-~~v-~~v~~~~-~~g~~latgs~dg~I~iwD~~~~-----~~~~~~~~~h~~~V~~v~f~-~~--- 672 (793)
T PLN00181 605 INQGVSIGTIKTK-ANI-CCVQFPS-ESGRSLAFGSADHKVYYYDLRNP-----KLPLCTMIGHSKTVSYVRFV-DS--- 672 (793)
T ss_pred CCCCcEEEEEecC-CCe-EEEEEeC-CCCCEEEEEeCCCeEEEEECCCC-----CccceEecCCCCCEEEEEEe-CC---
Confidence 865 33333333 567 8999952 46889999999999999999865 13566778999999999997 44
Q ss_pred CCCcEEEEEcCCC-EEEEECCCC-----CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363 245 DSANVILTAGHGG-LKFWDIRDP-----FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~-----~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
.+|++++.|+ |++||++.. ..++..+.+|...+++++|+|++.+|++|+.|+.|++|+.... .
T Consensus 673 ---~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~--------~ 741 (793)
T PLN00181 673 ---STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP--------M 741 (793)
T ss_pred ---CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC--------C
Confidence 6899999999 999999853 2567788899999999999999999999999999999997431 1
Q ss_pred CccCcc---ccce--EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 319 PFAGTK---QQGL--HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 319 ~~~~~~---~~~l--~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
++.... ...+ .....|...|.+++|+|++.+|++|+.||.|+||++
T Consensus 742 ~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 742 PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 110000 0000 122446678999999999999999999999999997
No 69
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.5e-23 Score=208.77 Aligned_cols=220 Identities=17% Similarity=0.251 Sum_probs=186.2
Q ss_pred cEEEEEeCCCcEEEEECCCCc------eeeEEeccCC--------------ccCCCCceEEEeecce----ecccccCCc
Q 008363 123 GYLAVLLGNGSLEVWEVPLLR------TMKAIYLSSM--------------KEGTDPRFVKLEPVFR----CSMLKCGGT 178 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~------~~~~l~~~~~--------------~~~~~~~~v~~~~~~~----~~~~~~~h~ 178 (568)
++|.+|+.||.|++|++..-. ++..+..|.. ++++.|..|++|.... |..+...|.
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred ceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 689999999999999987621 3455555554 6889999999999876 778888999
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC----CCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS----SIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~----~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
..| .||++- .++..++|+|+-|+.|.|||++++.. ..+......+. ++...|++++.++.+ ..|++|
T Consensus 118 DYV-kcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~------t~ivsG 189 (735)
T KOG0308|consen 118 DYV-KCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG------TIIVSG 189 (735)
T ss_pred chh-eeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc------eEEEec
Confidence 999 999971 26778999999999999999996622 01112222333 888999999999999 899999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+..+ |++||.++. ..+..+.+|+..|..+..++||+.+++++.||+|++||+ |+. .|+.++.
T Consensus 190 gtek~lr~wDprt~-~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdL----------gqQ------rCl~T~~ 252 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTC-KKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDL----------GQQ------RCLATYI 252 (735)
T ss_pred CcccceEEeccccc-cceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeec----------ccc------ceeeeEE
Confidence 9999 999999988 677778899999999999999999999999999999999 322 6788999
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.|...||++..+|.-..+.+|+.||.|..=|+.+.
T Consensus 253 vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 253 VHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 99999999999999999999999999999999763
No 70
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-21 Score=172.29 Aligned_cols=238 Identities=17% Similarity=0.235 Sum_probs=182.8
Q ss_pred CcceEEEee--ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-----EEeccCC-------
Q 008363 88 ALPRVVLCL--AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-----AIYLSSM------- 153 (568)
Q Consensus 88 ~~p~~~~~~--~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-----~l~~~~~------- 153 (568)
..|..+.+. .|..+.|+|.+|+|.| .+||+|+.|.+|++..+....+.. .+.-|..
T Consensus 75 ~~pp~v~~kr~khhkgsiyc~~ws~~g----------eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~f 144 (350)
T KOG0641|consen 75 KQPPSVLCKRNKHHKGSIYCTAWSPCG----------ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAF 144 (350)
T ss_pred cCCCeEEeeeccccCccEEEEEecCcc----------CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEE
Confidence 344444433 3555588899999999 799999999999997665422211 1111111
Q ss_pred ------------ccCCCCceEEEeecce--ecccccCCcCccceEE-EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 008363 154 ------------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTM-EWSTSPPHDYLLAGCHDGTVALWKFVASDSSID 218 (568)
Q Consensus 154 ------------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v-~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~ 218 (568)
..|..+..|.+.+-.+ ....+.||++-| +++ .|+ |-++++|+.|.+|++||++-.
T Consensus 145 ld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghi-lalyswn----~~m~~sgsqdktirfwdlrv~----- 214 (350)
T KOG0641|consen 145 LDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHI-LALYSWN----GAMFASGSQDKTIRFWDLRVN----- 214 (350)
T ss_pred ecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccE-EEEEEec----CcEEEccCCCceEEEEeeecc-----
Confidence 2234455555544433 344567999998 765 676 679999999999999999855
Q ss_pred CceeEEeeC--C-----CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC
Q 008363 219 SRPLLCFSA--D-----TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG 290 (568)
Q Consensus 219 ~~~~~~~~~--h-----~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~ 290 (568)
.++.++.. | ++.|.+++..|.| .+|++|..|. ..+||+|.+ +++..+..|...|.++.|+|...
T Consensus 215 -~~v~~l~~~~~~~glessavaav~vdpsg------rll~sg~~dssc~lydirg~-r~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 215 -SCVNTLDNDFHDGGLESSAVAAVAVDPSG------RLLASGHADSSCMLYDIRGG-RMIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred -ceeeeccCcccCCCcccceeEEEEECCCc------ceeeeccCCCceEEEEeeCC-ceeeeeCCCccceeEEEeCCCce
Confidence 55554421 2 3579999999999 9999999998 999999977 99999999999999999999999
Q ss_pred EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 291 CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 291 ~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
||++++.|..|++-|++ |.+- .+-++.....|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 287 yllt~syd~~ikltdlq---------gdla---~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQ---------GDLA---HELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecc---------cchh---hcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999994 3331 123455677899999999999999889999999999999873
No 71
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.91 E-value=2.8e-23 Score=186.10 Aligned_cols=272 Identities=13% Similarity=0.130 Sum_probs=222.1
Q ss_pred EEeeccCCceeeEEEEcc---CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------cc
Q 008363 93 VLCLAHNGKVAWDVKWKP---YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KE 155 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp---~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~ 155 (568)
+.|.+|+..+| +++|+| +| -+|++++.||.-.+-+-++|.-+.++.+|.. ++
T Consensus 8 l~c~ghtrpvv-dl~~s~itp~g----------~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aas 76 (334)
T KOG0278|consen 8 LTCHGHTRPVV-DLAFSPITPDG----------YFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAAS 76 (334)
T ss_pred eEEcCCCccee-EEeccCCCCCc----------eEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhh
Confidence 45789999888 999986 45 6999999999999999999999999999876 56
Q ss_pred CCCCceEEEeecceec-ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 156 GTDPRFVKLEPVFRCS-MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 156 ~~~~~~v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
++.|-..++|+..+.. .....|...| .+++|+ .|..+|++|+.+..++|||++.. ..+...+.+|.+.|..
T Consensus 77 aaadftakvw~a~tgdelhsf~hkhiv-k~~af~--~ds~~lltgg~ekllrvfdln~p-----~App~E~~ghtg~Ir~ 148 (334)
T KOG0278|consen 77 AAADFTAKVWDAVTGDELHSFEHKHIV-KAVAFS--QDSNYLLTGGQEKLLRVFDLNRP-----KAPPKEISGHTGGIRT 148 (334)
T ss_pred hcccchhhhhhhhhhhhhhhhhhhhee-eeEEec--ccchhhhccchHHHhhhhhccCC-----CCCchhhcCCCCccee
Confidence 6777778888887632 2334688888 999999 88999999999999999999865 3567788999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
+.|+... +.|+|..+|+ ||+||.+++ ..+..+. ...+|+++.++++|++|.+ ...+.|.+||...+.
T Consensus 149 v~wc~eD------~~iLSSadd~tVRLWD~rTg-t~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~--- 216 (334)
T KOG0278|consen 149 VLWCHED------KCILSSADDKTVRLWDHRTG-TEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFG--- 216 (334)
T ss_pred EEEeccC------ceEEeeccCCceEEEEeccC-cEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccccc---
Confidence 9999988 7888888888 999999998 5565553 3567999999999996555 566789999996533
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI 393 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i 393 (568)
.+..+. -...|.+...+|+...++.|+.|+.++.||+.++.....+.........|..++++|+..
T Consensus 217 -------------~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 217 -------------LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELY 282 (334)
T ss_pred -------------ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCcee
Confidence 112322 345688899999999999999999999999999876655444445567899999999999
Q ss_pred EEcccCCCCCcccccc
Q 008363 394 TVNTPLDNTPVPLKKT 409 (568)
Q Consensus 394 ~~~~~~~~~~~~~k~~ 409 (568)
++++..+.+.+.+--+
T Consensus 283 AsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 283 ASGSEDGTIRLWQTTP 298 (334)
T ss_pred eccCCCceEEEEEecC
Confidence 9999988887766444
No 72
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-22 Score=184.05 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=192.7
Q ss_pred CcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe
Q 008363 70 GDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY 149 (568)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~ 149 (568)
|-++++.......++....-.++-.+.+|++ .||++...-+. ..|++|+.|.+++|||+++|+++..+.
T Consensus 23 DLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did~~s----------~~liTGSAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 23 DLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDIDWDS----------KHLITGSADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred cEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEecCCc----------ceeeeccccceeEEEEcCCCcEEEEee
Confidence 3344444333333334445567888899999 88999999888 799999999999999999999987752
Q ss_pred ccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCC-CCceeE
Q 008363 150 LSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSI-DSRPLL 223 (568)
Q Consensus 150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~-~~~~~~ 223 (568)
....| ..+.|+ .+|++++.... .+.|.++|++...... ...|+.
T Consensus 92 ---------------------------~~~~V-k~~~F~--~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 92 ---------------------------TNSPV-KRVDFS--FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred ---------------------------cCCee-EEEeec--cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 23445 889998 77877776653 4679999998543211 235677
Q ss_pred EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363 224 CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 224 ~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~ 302 (568)
.+..+.+.++.+-|.|.+ .+|++|..++ |..||++++...+.....|...|+.|+++||..++++++.|.+-+
T Consensus 142 kI~t~~skit~a~Wg~l~------~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttak 215 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLG------ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAK 215 (327)
T ss_pred EecCCccceeeeeecccC------CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccce
Confidence 888888999999999999 8999999999 999999998777777788999999999999999999999999999
Q ss_pred EEEcccccc------CCCCC---------------CCC---ccCc---------------cccceEEEecCCCCEEEEEE
Q 008363 303 IVSLLKAAY------DVPAT---------------GKP---FAGT---------------KQQGLHLVNCSSFAIWSVQV 343 (568)
Q Consensus 303 lwd~~~~~~------~~~~~---------------g~~---~~~~---------------~~~~l~~~~~h~~~V~~l~~ 343 (568)
+||.+.+.- +.|+. |+. +..+ -.+.+..+++|-++|++|+|
T Consensus 216 l~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAf 295 (327)
T KOG0643|consen 216 LVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAF 295 (327)
T ss_pred eeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEE
Confidence 999876531 11111 000 0000 01234557899999999999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCC
Q 008363 344 SRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 344 sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|+|+..++|+.||.|++.-+..
T Consensus 296 hPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 296 HPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCcccccCCCCceEEEEEecc
Confidence 99999999999999999987643
No 73
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=2.9e-23 Score=197.98 Aligned_cols=207 Identities=21% Similarity=0.330 Sum_probs=162.3
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+..|.. -||-+.||++| ++||+++.|.+..||.+.....+. + ..+
T Consensus 219 il~~htd-EVWfl~FS~nG----------kyLAsaSkD~Taiiw~v~~d~~~k-----------------l------~~t 264 (519)
T KOG0293|consen 219 ILQDHTD-EVWFLQFSHNG----------KYLASASKDSTAIIWIVVYDVHFK-----------------L------KKT 264 (519)
T ss_pred hHhhCCC-cEEEEEEcCCC----------eeEeeccCCceEEEEEEecCccee-----------------e------eee
Confidence 3567888 78899999999 899999999999999987633211 1 122
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
+.||..+| ..+.|+ ||.++|++++.|..+.+||+.++ ...+.+ .+|...+.+++|.|++ ..|++
T Consensus 265 lvgh~~~V-~yi~wS--PDdryLlaCg~~e~~~lwDv~tg------d~~~~y~~~~~~S~~sc~W~pDg------~~~V~ 329 (519)
T KOG0293|consen 265 LVGHSQPV-SYIMWS--PDDRYLLACGFDEVLSLWDVDTG------DLRHLYPSGLGFSVSSCAWCPDG------FRFVT 329 (519)
T ss_pred eecccCce-EEEEEC--CCCCeEEecCchHheeeccCCcc------hhhhhcccCcCCCcceeEEccCC------ceeEe
Confidence 28999999 999999 88999999999999999999988 555544 2346789999999999 88999
Q ss_pred EcCCC-EEEEECCCCCc---------ceeee-------------------------------CCCCCCeEEEEEcCCC--
Q 008363 253 AGHGG-LKFWDIRDPFR---------PLWDI-------------------------------HPAPKFIYGLDWLPDP-- 289 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~---------~~~~~-------------------------------~~h~~~i~~l~~sp~~-- 289 (568)
|+.|+ +..||+..... .+..+ .....+|++++.|.++
T Consensus 330 Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 330 GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKL 409 (519)
T ss_pred cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcE
Confidence 99998 99999865310 00000 0123456666666655
Q ss_pred -------------------------------------------CEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 290 -------------------------------------------GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 290 -------------------------------------------~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
.++++|++|+.|+||+.. +|++
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~--------sgkl------- 474 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI--------SGKL------- 474 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc--------CCce-------
Confidence 567778888888888874 4655
Q ss_pred ceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~ 365 (568)
+..+.||...|++|+|+|.. .++|++|.||+|+||-..
T Consensus 475 -l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 475 -LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred -eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 47999999999999999986 789999999999999874
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=2e-22 Score=197.20 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=183.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
-+.+.+|+. .|.++++.|.| ..|++|+.|.+|++||+......... +-.+.
T Consensus 160 Ei~l~hgtk-~Vsal~~Dp~G----------aR~~sGs~Dy~v~~wDf~gMdas~~~------------fr~l~------ 210 (641)
T KOG0772|consen 160 EIQLKHGTK-IVSALAVDPSG----------ARFVSGSLDYTVKFWDFQGMDASMRS------------FRQLQ------ 210 (641)
T ss_pred eEeccCCce-EEEEeeecCCC----------ceeeeccccceEEEEecccccccchh------------hhccC------
Confidence 344455665 77799999999 79999999999999999874322110 00011
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC------CCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS------IDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~------~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
......| .+++|+ +.|+.|++.+....++|+|-...... .-+.-+..-+||...++|.+|+|...
T Consensus 211 ---P~E~h~i-~sl~ys--~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k--- 281 (641)
T KOG0772|consen 211 ---PCETHQI-NSLQYS--VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK--- 281 (641)
T ss_pred ---ccccccc-ceeeec--CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc---
Confidence 1222345 789999 67888888888889999996543221 01112234468999999999999974
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeC-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIH-----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
..|+|++.|+ +|+||+......+..+. +..-.+++++|+|||..|++|+.||.|.+|+.+... -++
T Consensus 282 --~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~------v~p 353 (641)
T KOG0772|consen 282 --EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT------VRP 353 (641)
T ss_pred --cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc------ccc
Confidence 8899999999 99999998765554443 334467999999999999999999999999985422 111
Q ss_pred ccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee---ccCCCCCcceeeeecccCCCCceE
Q 008363 320 FAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE---KDHSRNRPMHFLCGSVTEDESAIT 394 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~---~~~~~~~~~~~~~~s~~~~~~~i~ 394 (568)
.+..-..|.. .|+||.||++|++|++-+.|+++++|||...+.. ...-..+.+...| .|+++...|.
T Consensus 354 -------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc-~FSPd~kli~ 425 (641)
T KOG0772|consen 354 -------VMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDC-CFSPDDKLIL 425 (641)
T ss_pred -------ceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCcc-ccCCCceEEE
Confidence 1234567876 8999999999999999999999999999764322 1111223333334 5889988888
Q ss_pred EcccCCC
Q 008363 395 VNTPLDN 401 (568)
Q Consensus 395 ~~~~~~~ 401 (568)
.|+...+
T Consensus 426 TGtS~~~ 432 (641)
T KOG0772|consen 426 TGTSAPN 432 (641)
T ss_pred ecccccC
Confidence 8765443
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.91 E-value=3.4e-22 Score=180.95 Aligned_cols=214 Identities=21% Similarity=0.261 Sum_probs=184.0
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
+...+|.. .+..|+|+.+| .+|.+|+.|.++.||-.-+|+.+.++
T Consensus 4 i~l~GHER-plTqiKyN~eG----------DLlFscaKD~~~~vw~s~nGerlGty------------------------ 48 (327)
T KOG0643|consen 4 ILLQGHER-PLTQIKYNREG----------DLLFSCAKDSTPTVWYSLNGERLGTY------------------------ 48 (327)
T ss_pred cccccCcc-ccceEEecCCC----------cEEEEecCCCCceEEEecCCceeeee------------------------
Confidence 34578999 55599999999 79999999999999998888988887
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.||++.| +|++.. .+..++++|+.|.+++|||+.++ +++..++ -..+|..+.|++.+ ++++.
T Consensus 49 --~GHtGav-W~~Did--~~s~~liTGSAD~t~kLWDv~tG------k~la~~k-~~~~Vk~~~F~~~g------n~~l~ 110 (327)
T KOG0643|consen 49 --DGHTGAV-WCCDID--WDSKHLITGSADQTAKLWDVETG------KQLATWK-TNSPVKRVDFSFGG------NLILA 110 (327)
T ss_pred --cCCCceE-EEEEec--CCcceeeeccccceeEEEEcCCC------cEEEEee-cCCeeEEEeeccCC------cEEEE
Confidence 8999999 999876 77889999999999999999988 7777774 36779999999999 67666
Q ss_pred EcCC-----C-EEEEECCCCC------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363 253 AGHG-----G-LKFWDIRDPF------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 253 ~s~d-----~-v~lwD~~~~~------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
+.++ + |.++|++... .|+..+..+...++.+-|.|-+.+|++|..||.|..||+++ |..+
T Consensus 111 ~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~--------g~~~ 182 (327)
T KOG0643|consen 111 STDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDART--------GKEL 182 (327)
T ss_pred EehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEccc--------Ccee
Confidence 6542 5 9999999432 56777878889999999999999999999999999999965 4332
Q ss_pred cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363 321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
+.....|...|+.|+++++..+++|+|.|.+-++||+.+-.+.+.+.
T Consensus 183 -------v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 183 -------VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred -------eechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 35667799999999999999999999999999999998887776644
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=6.3e-23 Score=189.45 Aligned_cols=252 Identities=16% Similarity=0.265 Sum_probs=197.0
Q ss_pred cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEE------CCCCceeeEEeccCC---------
Q 008363 89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWE------VPLLRTMKAIYLSSM--------- 153 (568)
Q Consensus 89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd------~~~~~~~~~l~~~~~--------- 153 (568)
-..+..+.+|.|.+. +|+|++.+ .+++++++|++..||. ++....-....+...
T Consensus 180 g~CL~~Y~GH~GSVN-sikfh~s~----------~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 180 GACLATYTGHTGSVN-SIKFHNSG----------LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred ccceeeeccccccee-eEEecccc----------ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 346777889999655 99999999 7999999999999998 332111111111000
Q ss_pred ----ccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363 154 ----KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT 229 (568)
Q Consensus 154 ----~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 229 (568)
...++...+++ .+..+.+|...| .+.+|- ..|+.+++++.|.+..+||+.++ .++..+.+|.
T Consensus 249 d~d~~~~sD~~tiRv-----Pl~~ltgH~~vV-~a~dWL--~gg~Q~vTaSWDRTAnlwDVEtg------e~v~~LtGHd 314 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRV-----PLMRLTGHRAVV-SACDWL--AGGQQMVTASWDRTANLWDVETG------EVVNILTGHD 314 (481)
T ss_pred ccccccccCCceeee-----eeeeeeccccce-Eehhhh--cCcceeeeeeccccceeeeeccC------ceeccccCcc
Confidence 01122222222 233448999999 999999 78999999999999999999988 8899999999
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
...+.+.-+|.. .++++.+.|. .++||++..-..+..|++|...|+++.|.-+.+ +++|++|.+|++||+++
T Consensus 315 ~ELtHcstHptQ------rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 315 SELTHCSTHPTQ------RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRN 387 (481)
T ss_pred hhccccccCCcc------eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeecc
Confidence 999999999998 8999999998 999999976677789999999999999997655 89999999999999998
Q ss_pred cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcce---eeeec
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMH---FLCGS 385 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~---~~~~s 385 (568)
+. .++.++. ...+++.++++..+..|+.--.+..|++||++..++.+.+...+..| ..|.+
T Consensus 388 MR---------------splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 388 MR---------------SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred cc---------------Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 76 4456665 45688999999888899999999999999999888777664444433 23444
Q ss_pred ccC
Q 008363 386 VTE 388 (568)
Q Consensus 386 ~~~ 388 (568)
+.+
T Consensus 452 W~e 454 (481)
T KOG0300|consen 452 WLE 454 (481)
T ss_pred ccc
Confidence 444
No 77
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=3.1e-24 Score=217.47 Aligned_cols=232 Identities=18% Similarity=0.248 Sum_probs=196.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+.+|.. .+.++..-..+ ..+++|+.|..+-||.+....++..+
T Consensus 24 ~~~hsa-av~~lk~~~s~----------r~~~~Gg~~~k~~L~~i~kp~~i~S~-------------------------- 66 (825)
T KOG0267|consen 24 FVAHSA-AVGCLKIRKSS----------RSLVTGGEDEKVNLWAIGKPNAITSL-------------------------- 66 (825)
T ss_pred hhhhhh-hhceeeeeccc----------eeeccCCCceeeccccccCCchhhee--------------------------
Confidence 356666 44466664455 78999999999999999887666555
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+|...| -+|.|+ .+..+|++|+.+|+|++||+... +.++++.+|...+.+|.|+|.+ .++|+|+
T Consensus 67 ~~hespI-eSl~f~--~~E~LlaagsasgtiK~wDleeA------k~vrtLtgh~~~~~sv~f~P~~------~~~a~gS 131 (825)
T KOG0267|consen 67 TGHESPI-ESLTFD--TSERLLAAGSASGTIKVWDLEEA------KIVRTLTGHLLNITSVDFHPYG------EFFASGS 131 (825)
T ss_pred eccCCcc-eeeecC--cchhhhcccccCCceeeeehhhh------hhhhhhhccccCcceeeeccce------EEecccc
Confidence 8899999 999998 77789999999999999999976 8888999999999999999999 8999999
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
.|+ +++||++.. .|.+.+.+|...+.++.|+|+|++++.+++|.+++|||+. .|+.. ..|..
T Consensus 132 tdtd~~iwD~Rk~-Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~--------agk~~--------~ef~~ 194 (825)
T KOG0267|consen 132 TDTDLKIWDIRKK-GCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT--------AGKLS--------KEFKS 194 (825)
T ss_pred ccccceehhhhcc-CceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccc--------ccccc--------ccccc
Confidence 999 999999965 7888999999999999999999999999999999999994 36554 58999
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 334 SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
|++.|..+.|+|..-++++||.|++|++||+++..+..... .......|..+.+++..+..|
T Consensus 195 ~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G 256 (825)
T KOG0267|consen 195 HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSG 256 (825)
T ss_pred ccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecC
Confidence 99999999999999999999999999999998765544322 224455666777766655544
No 78
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=3.7e-22 Score=183.72 Aligned_cols=230 Identities=19% Similarity=0.355 Sum_probs=170.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
.|.+|+|||... .+|++++.||+||+|+++. +..... ....|.++
T Consensus 29 sIS~l~FSP~~~---------~~~~A~SWD~tVR~wevq~~g~~~~k-------------------------a~~~~~~P 74 (347)
T KOG0647|consen 29 SISALAFSPQAD---------NLLAAGSWDGTVRIWEVQNSGQLVPK-------------------------AQQSHDGP 74 (347)
T ss_pred chheeEeccccC---------ceEEecccCCceEEEEEecCCcccch-------------------------hhhccCCC
Confidence 566999999553 6888999999999999987 333211 11678899
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
| ++++|+ .+|..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+.. ....|+|||.|+ |+
T Consensus 75 v-L~v~Ws--ddgskVf~g~~Dk~~k~wDL~S~-------Q~~~v~~Hd~pvkt~~wv~~~----~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 75 V-LDVCWS--DDGSKVFSGGCDKQAKLWDLASG-------QVSQVAAHDAPVKTCHWVPGM----NYQCLVTGSWDKTLK 140 (347)
T ss_pred e-EEEEEc--cCCceEEeeccCCceEEEEccCC-------CeeeeeecccceeEEEEecCC----CcceeEeccccccee
Confidence 9 999999 99999999999999999999976 456677999999999998876 234899999999 99
Q ss_pred EEECCCCCcceeeeC-----------------------------------------CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 260 FWDIRDPFRPLWDIH-----------------------------------------PAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 260 lwD~~~~~~~~~~~~-----------------------------------------~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
+||+|.. .++.++. ...-.+.||+..++....+.|+-+
T Consensus 141 fWD~R~~-~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 141 FWDTRSS-NPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred ecccCCC-CeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 9999976 4443331 011234566666666666777777
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCC---------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS---------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~---------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
|.+.+..+... .+ ..-.+|++|+ .+|++|+|+|....|+|+|.||++.+||-....-
T Consensus 220 Grv~iq~id~~--------~~------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k 285 (347)
T KOG0647|consen 220 GRVAIQYIDDP--------NP------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK 285 (347)
T ss_pred ceEEEEecCCC--------Cc------cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh
Confidence 77777666431 11 1113666776 2578899999999999999999999999876544
Q ss_pred eccCCCCCcceeeeecccCCCCceEE
Q 008363 370 EKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 370 ~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.+....... .+.|.++..+|..++-
T Consensus 286 Lk~s~~~~q-pItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 286 LKTSETHPQ-PITCCSFNRNGSIFAY 310 (347)
T ss_pred hhccCcCCC-ccceeEecCCCCEEEE
Confidence 444333333 3456678888877654
No 79
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=3.7e-23 Score=185.31 Aligned_cols=232 Identities=17% Similarity=0.220 Sum_probs=186.7
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT 157 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~ 157 (568)
-+-.+.+|.+ .||......+. ..-|+++.|-+-+|||.-+|..+..+....- +.|+
T Consensus 51 wigtfeghkg-avw~~~l~~na----------~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 51 WIGTFEGHKG-AVWSATLNKNA----------TRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred cEEeeeccCc-ceeeeecCchh----------hhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccc
Confidence 4667899999 88899998887 6889999999999999999887766532111 5566
Q ss_pred CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
....+++.+..+ ......+|++.| ..+-|. .....|++++.|++||+||.+++ ..++.+. ...+|++
T Consensus 120 ~ekllrvfdln~p~App~E~~ghtg~I-r~v~wc--~eD~~iLSSadd~tVRLWD~rTg------t~v~sL~-~~s~VtS 189 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPKAPPKEISGHTGGI-RTVLWC--HEDKCILSSADDKTVRLWDHRTG------TEVQSLE-FNSPVTS 189 (334)
T ss_pred hHHHhhhhhccCCCCCchhhcCCCCcc-eeEEEe--ccCceEEeeccCCceEEEEeccC------cEEEEEe-cCCCCcc
Confidence 777777766555 334557999999 999998 66678999999999999999988 6666663 3677999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
+..+++| .+|.++...+|.+||..+- ..+..+. -+..|.+...+|+...+++|+.|..++.||..
T Consensus 190 lEvs~dG------~ilTia~gssV~Fwdaksf-~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~------- 254 (334)
T KOG0278|consen 190 LEVSQDG------RILTIAYGSSVKFWDAKSF-GLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYN------- 254 (334)
T ss_pred eeeccCC------CEEEEecCceeEEeccccc-cceeecc-CccccccccccCCCceEEecCcceEEEEEecc-------
Confidence 9999998 5555554445999999865 5555442 35668999999999999999999999999994
Q ss_pred CCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 315 ATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+|+.+ ..+ .+|.++|.||.|+|+|...++||.||+|++|....+
T Consensus 255 -TgeEi--------~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 255 -TGEEI--------GSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred -CCcee--------eecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 56554 343 899999999999999999999999999999998543
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=2.6e-22 Score=181.17 Aligned_cols=210 Identities=16% Similarity=0.237 Sum_probs=172.3
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.. .+.+|+|+-+| ..|++|+.|+++.+|++........+ ..
T Consensus 16 ~~~~~~-~v~Sv~wn~~g----------~~lasgs~dktv~v~n~e~~r~~~~~------------------------~~ 60 (313)
T KOG1407|consen 16 LQGHVQ-KVHSVAWNCDG----------TKLASGSFDKTVSVWNLERDRFRKEL------------------------VY 60 (313)
T ss_pred hhhhhh-cceEEEEcccC----------ceeeecccCCceEEEEecchhhhhhh------------------------cc
Confidence 356777 45599999999 89999999999999999986444332 12
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+|...| -.+.|.|.. .++|++++.|.+|++||++.+ ++........+. .-+.|+|+| .+++.++
T Consensus 61 ~gh~~sv-dql~w~~~~-~d~~atas~dk~ir~wd~r~~------k~~~~i~~~~en-i~i~wsp~g------~~~~~~~ 125 (313)
T KOG1407|consen 61 RGHTDSV-DQLCWDPKH-PDLFATASGDKTIRIWDIRSG------KCTARIETKGEN-INITWSPDG------EYIAVGN 125 (313)
T ss_pred cCCCcch-hhheeCCCC-CcceEEecCCceEEEEEeccC------cEEEEeeccCcc-eEEEEcCCC------CEEEEec
Confidence 7899998 899999763 369999999999999999977 777766443333 457889988 7888888
Q ss_pred CCC-EEEEECCCC----------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363 255 HGG-LKFWDIRDP----------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVI 293 (568)
Q Consensus 255 ~d~-v~lwD~~~~----------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~ 293 (568)
.|- |.+.|.++. .+++..+..|+....||.|+|+|++++
T Consensus 126 kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 126 KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFA 205 (313)
T ss_pred CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEe
Confidence 776 888887653 144555678999999999999999999
Q ss_pred EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+|+.|-.+-|||+.. +.|++.+..+.-+|..+.|+-+|++||++|.|..|-|=++++|...
T Consensus 206 ~GsADAlvSLWD~~E----------------LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~ 266 (313)
T KOG1407|consen 206 TGSADALVSLWDVDE----------------LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV 266 (313)
T ss_pred eccccceeeccChhH----------------hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence 999999999999943 2577899999999999999999999999999999999888877543
No 81
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=3.5e-22 Score=209.54 Aligned_cols=230 Identities=17% Similarity=0.242 Sum_probs=198.5
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE-EeccCC--------------ccCCCCc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA-IYLSSM--------------KEGTDPR 160 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~-l~~~~~--------------~~~~~~~ 160 (568)
.+|....+.+..|. + +++++++.|++|++|+..++..+.. +.+|.. ++|+.|.
T Consensus 204 ~~~~~~~~~~~q~~-~-----------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~ 271 (537)
T KOG0274|consen 204 LGTDDHVVLCLQLH-D-----------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK 271 (537)
T ss_pred cccCcchhhhheee-c-----------CeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC
Confidence 33444355477777 3 4899999999999999999888887 888876 6789999
Q ss_pred eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363 161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA 238 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 238 (568)
.+++|+..+ |...+.||...| .++... ..++++|+.|.+|++|++.++ .++..+.+|.++|++|..+
T Consensus 272 t~rvWd~~sg~C~~~l~gh~stv-~~~~~~----~~~~~sgs~D~tVkVW~v~n~------~~l~l~~~h~~~V~~v~~~ 340 (537)
T KOG0274|consen 272 TERVWDCSTGECTHSLQGHTSSV-RCLTID----PFLLVSGSRDNTVKVWDVTNG------ACLNLLRGHTGPVNCVQLD 340 (537)
T ss_pred cEEeEecCCCcEEEEecCCCceE-EEEEcc----CceEeeccCCceEEEEeccCc------ceEEEeccccccEEEEEec
Confidence 999999777 888999999999 999854 558999999999999999977 8999999999999999998
Q ss_pred cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
+ .++++|+.|+ |++||+.+. +++..+.+|...|+++.+.+. ..+++|+.|++|++||++...
T Consensus 341 --~------~~lvsgs~d~~v~VW~~~~~-~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~------- 403 (537)
T KOG0274|consen 341 --E------PLLVSGSYDGTVKVWDPRTG-KCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR------- 403 (537)
T ss_pred --C------CEEEEEecCceEEEEEhhhc-eeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-------
Confidence 4 6999999999 999999976 999999999999999988865 889999999999999996521
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCC
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSR 375 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~ 375 (568)
+|+.++.+|...|..+.+ .+++|++++.|++|++||..++...+....
T Consensus 404 --------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 404 --------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred --------hhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 466899999999977665 678999999999999999998887766444
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=2.7e-23 Score=198.41 Aligned_cols=253 Identities=18% Similarity=0.180 Sum_probs=198.4
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccCCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~~~ 158 (568)
...|.+++- ++.|.++. ..|++|+.|..|++|++...+ .+.+|.+... +..+.
T Consensus 171 ld~h~gev~-~v~~l~~s----------dtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~ 239 (459)
T KOG0288|consen 171 LDAHEGEVH-DVEFLRNS----------DTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASN 239 (459)
T ss_pred hhccccccc-eeEEccCc----------chhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecC
Confidence 457888665 99999997 699999999999999998755 4555555422 56788
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
+..+++|++.. ...++.||+..| +++.|. .....+++|+.|.+|++||+... .|..++.. .+.+.+|.
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkV-t~ak~~--~~~~~vVsgs~DRtiK~WDl~k~------~C~kt~l~-~S~cnDI~ 309 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKV-TAAKFK--LSHSRVVSGSADRTIKLWDLQKA------YCSKTVLP-GSQCNDIV 309 (459)
T ss_pred CCceeeeeccchhhhhhhcccccce-eeehhh--ccccceeeccccchhhhhhhhhh------heeccccc-cccccceE
Confidence 88999999877 566788999999 999988 44445999999999999999966 66665532 44577777
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
.+ . ..++||..|+ |++||+++. .++.....+. .|+++..++++..|++++.|.++.+.|+|...
T Consensus 310 ~~--~------~~~~SgH~DkkvRfwD~Rs~-~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~e----- 374 (459)
T KOG0288|consen 310 CS--I------SDVISGHFDKKVRFWDIRSA-DKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKE----- 374 (459)
T ss_pred ec--c------eeeeecccccceEEEeccCC-ceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeeccccc-----
Confidence 66 3 5899999998 999999988 7776665544 89999999999999999999999999997632
Q ss_pred CCCCccCccccceEEEec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc-eeeeecccCCC
Q 008363 316 TGKPFAGTKQQGLHLVNC----SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM-HFLCGSVTEDE 390 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~----h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~-~~~~~s~~~~~ 390 (568)
. .+.+.. .....+.+.|||++.|+++||.||.|+||++.+++++........+ .+.|.++.+.|
T Consensus 375 ---I--------~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 375 ---I--------RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred ---E--------EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCC
Confidence 1 122221 1123788999999999999999999999999999999875544433 56666777666
Q ss_pred CceE
Q 008363 391 SAIT 394 (568)
Q Consensus 391 ~~i~ 394 (568)
..+.
T Consensus 444 ~~Ll 447 (459)
T KOG0288|consen 444 SGLL 447 (459)
T ss_pred chhh
Confidence 5543
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.90 E-value=5.7e-22 Score=201.88 Aligned_cols=181 Identities=17% Similarity=0.224 Sum_probs=159.9
Q ss_pred ccCCCCceEEEeecceecc--------------cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363 154 KEGTDPRFVKLEPVFRCSM--------------LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS 219 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~~~~--------------~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 219 (568)
+.++.|.++++|+...... ....-...| .|+.++ |||.+||++--|.+|+||-+.+-
T Consensus 470 vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddv-L~v~~S--pdgk~LaVsLLdnTVkVyflDtl------ 540 (888)
T KOG0306|consen 470 VTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDV-LCVSVS--PDGKLLAVSLLDNTVKVYFLDTL------ 540 (888)
T ss_pred EEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccE-EEEEEc--CCCcEEEEEeccCeEEEEEecce------
Confidence 6788999999998654211 111234667 899988 99999999999999999999966
Q ss_pred ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
+....+.||.-||.||..+|++ ++++|||.|. |++|-+.-+ .|-..+.+|.+.|+++.|.|....++++|.|
T Consensus 541 KFflsLYGHkLPV~smDIS~DS------klivTgSADKnVKiWGLdFG-DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD 613 (888)
T KOG0306|consen 541 KFFLSLYGHKLPVLSMDISPDS------KLIVTGSADKNVKIWGLDFG-DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKD 613 (888)
T ss_pred eeeeeecccccceeEEeccCCc------CeEEeccCCCceEEeccccc-hhhhhhhcccCceeEEEEcccceeEEEecCc
Confidence 7788899999999999999999 8999999999 999999877 8888999999999999999999999999999
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+.|+-||-.++ ..++.+.+|...||+++.+|+|.+++++|.|.+|++|.-..
T Consensus 614 ~kvKqWDg~kF----------------e~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 614 GKVKQWDGEKF----------------EEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ceEEeechhhh----------------hhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 99999998553 45679999999999999999999999999999999998765
No 84
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.5e-22 Score=194.87 Aligned_cols=206 Identities=17% Similarity=0.226 Sum_probs=173.1
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+.+|+. .++.+.|+|++. ..|++|++|+.+++||+.+......+
T Consensus 103 LR~~~ah~a-pv~~~~f~~~d~---------t~l~s~sDd~v~k~~d~s~a~v~~~l----------------------- 149 (487)
T KOG0310|consen 103 LRQLYAHQA-PVHVTKFSPQDN---------TMLVSGSDDKVVKYWDLSTAYVQAEL----------------------- 149 (487)
T ss_pred HHHHhhccC-ceeEEEecccCC---------eEEEecCCCceEEEEEcCCcEEEEEe-----------------------
Confidence 344668988 677999999886 78999999999999999996643344
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|+..| .|.+|+|..+ .++++|++||+|++||++.. ...+..+ .|..+|..+.|-|.| .+||
T Consensus 150 ---~~htDYV-R~g~~~~~~~-hivvtGsYDg~vrl~DtR~~-----~~~v~el-nhg~pVe~vl~lpsg------s~ia 212 (487)
T KOG0310|consen 150 ---SGHTDYV-RCGDISPAND-HIVVTGSYDGKVRLWDTRSL-----TSRVVEL-NHGCPVESVLALPSG------SLIA 212 (487)
T ss_pred ---cCCccee-EeeccccCCC-eEEEecCCCceEEEEEeccC-----CceeEEe-cCCCceeeEEEcCCC------CEEE
Confidence 8999999 9999996644 58999999999999999966 2455555 789999999999998 7999
Q ss_pred EEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 252 TAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 252 s~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+++...|++||+-++.+.+..+..|...|+|+++..++..|++++-|+.|++||+.+. +-++.+
T Consensus 213 sAgGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~----------------Kvv~s~ 276 (487)
T KOG0310|consen 213 SAGGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY----------------KVVHSW 276 (487)
T ss_pred EcCCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce----------------EEEEee
Confidence 9998889999999876666666679999999999999999999999999999998442 223343
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
. -.++|.+++.+|++..++.|..||.+.+-..
T Consensus 277 ~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 277 K-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred e-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 3 5689999999999999999999999887643
No 85
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.2e-22 Score=181.69 Aligned_cols=246 Identities=16% Similarity=0.184 Sum_probs=186.7
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeecceecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..|.. .|+++...-.| ..||||+.|++|+|+.+.... .+.+|
T Consensus 8 t~H~D-~IHda~lDyyg----------krlATcsSD~tVkIf~v~~n~~s~ll~~L------------------------ 52 (299)
T KOG1332|consen 8 TQHED-MIHDAQLDYYG----------KRLATCSSDGTVKIFEVRNNGQSKLLAEL------------------------ 52 (299)
T ss_pred hhhhh-hhhHhhhhhhc----------ceeeeecCCccEEEEEEcCCCCceeeeEe------------------------
Confidence 45666 66677766677 899999999999999998733 33333
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.||.++| +.++|.--.-|.+||++++||.|.||.-..+.+ .....+..|.+.|++|+|.|.+ ..-+||+
T Consensus 53 --~Gh~GPV-wqv~wahPk~G~iLAScsYDgkVIiWke~~g~w----~k~~e~~~h~~SVNsV~waphe----ygl~Lac 121 (299)
T KOG1332|consen 53 --TGHSGPV-WKVAWAHPKFGTILASCSYDGKVIIWKEENGRW----TKAYEHAAHSASVNSVAWAPHE----YGLLLAC 121 (299)
T ss_pred --cCCCCCe-eEEeecccccCcEeeEeecCceEEEEecCCCch----hhhhhhhhhcccceeecccccc----cceEEEE
Confidence 8999999 999997333688999999999999999887744 6677888999999999999987 4578999
Q ss_pred EcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCC---C-----------CEEEEEeCCCcEEEEEccccccCCCC
Q 008363 253 AGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPD---P-----------GCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~---~-----------~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
++.|| |.|.+.+... ..-.....|.-.|++++|.|- | +.|++|+.|+.|+||+..+
T Consensus 122 asSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~------- 194 (299)
T KOG1332|consen 122 ASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDS------- 194 (299)
T ss_pred eeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCC-------
Confidence 99999 9999888652 222445689999999999996 4 5699999999999999854
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCC----CEEEEEeCCCeEEEEEcCCC--eeeccCCCCCcce-eeeecccC
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAYCSADGTVHRFQLTAK--AVEKDHSRNRPMH-FLCGSVTE 388 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s~s~Dg~v~iwd~~~~--~~~~~~~~~~~~~-~~~~s~~~ 388 (568)
++- ..-.++.+|.+-|+.++|.|.- .+||+||.||+|.||-.... ..+.... +..|. .--.+++.
T Consensus 195 -~~w------~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~ 266 (299)
T KOG1332|consen 195 -DSW------KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSL 266 (299)
T ss_pred -cch------hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEec
Confidence 221 1113589999999999999983 68999999999999987521 1111111 11111 22337778
Q ss_pred CCCceEEcccCCCC
Q 008363 389 DESAITVNTPLDNT 402 (568)
Q Consensus 389 ~~~~i~~~~~~~~~ 402 (568)
.|+.|++.--...+
T Consensus 267 sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 267 SGNILAVSGGDNKV 280 (299)
T ss_pred cccEEEEecCCcEE
Confidence 88887775444444
No 86
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.4e-21 Score=180.60 Aligned_cols=237 Identities=17% Similarity=0.239 Sum_probs=179.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
-|.+|.|+|.+ +.|++++.||++++|++........ ..|..++
T Consensus 15 ~IS~v~f~~~~----------~~LLvssWDgslrlYdv~~~~l~~~---------------------------~~~~~pl 57 (323)
T KOG1036|consen 15 GISSVKFSPSS----------SDLLVSSWDGSLRLYDVPANSLKLK---------------------------FKHGAPL 57 (323)
T ss_pred ceeeEEEcCcC----------CcEEEEeccCcEEEEeccchhhhhh---------------------------eecCCce
Confidence 45599999988 6888889999999999998644332 5678888
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
++++|. + ...+++|+.||.|+.+|+.++ ....+..|..+|.+|.+++.. ..+++||.|+ |++
T Consensus 58 -L~c~F~--d-~~~~~~G~~dg~vr~~Dln~~-------~~~~igth~~~i~ci~~~~~~------~~vIsgsWD~~ik~ 120 (323)
T KOG1036|consen 58 -LDCAFA--D-ESTIVTGGLDGQVRRYDLNTG-------NEDQIGTHDEGIRCIEYSYEV------GCVISGSWDKTIKF 120 (323)
T ss_pred -eeeecc--C-CceEEEeccCceEEEEEecCC-------cceeeccCCCceEEEEeeccC------CeEEEcccCccEEE
Confidence 999988 4 469999999999999999976 334566899999999999887 7999999999 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc-------------------
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA------------------- 321 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~------------------- 321 (568)
||.|.. .+...+. ....|.++..+ +..|++|+.|..|.+||+|++..+.......++
T Consensus 121 wD~R~~-~~~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 121 WDPRNK-VVVGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred Eecccc-ccccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe
Confidence 999974 4444443 34478888877 888999999999999999988654311111110
Q ss_pred ----------C---ccccceEEEecCC---------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcc
Q 008363 322 ----------G---TKQQGLHLVNCSS---------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPM 379 (568)
Q Consensus 322 ----------~---~~~~~l~~~~~h~---------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~ 379 (568)
. ..+..-..|++|. .+|++|+|+|-.+.|+||+.||.|.+||+.+.+-.....+. ..
T Consensus 197 ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~-~~ 275 (323)
T KOG1036|consen 197 IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY-ET 275 (323)
T ss_pred ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC-CC
Confidence 0 0001112455665 37999999999999999999999999999876544443322 12
Q ss_pred eeeeecccCCCCceEEcc
Q 008363 380 HFLCGSVTEDESAITVNT 397 (568)
Q Consensus 380 ~~~~~s~~~~~~~i~~~~ 397 (568)
.+...+++.+|+.+++++
T Consensus 276 SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIAS 293 (323)
T ss_pred ceEEEEeccCCCeEEEEe
Confidence 244558899999998864
No 87
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.7e-22 Score=186.57 Aligned_cols=210 Identities=18% Similarity=0.233 Sum_probs=182.1
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+.+|.. -||.++-.... .++.+++.|.+.+||.++++.|+..+
T Consensus 144 ~~GHkD-GiW~Vaa~~tq----------pi~gtASADhTA~iWs~Esg~CL~~Y-------------------------- 186 (481)
T KOG0300|consen 144 LEGHKD-GIWHVAADSTQ----------PICGTASADHTARIWSLESGACLATY-------------------------- 186 (481)
T ss_pred hccccc-ceeeehhhcCC----------cceeecccccceeEEeeccccceeee--------------------------
Confidence 568988 56788887766 59999999999999999999999887
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEc------cCCC-----C-------------------C----CCCc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKF------VASD-----S-------------------S----IDSR 220 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~------~~~~-----~-------------------~----~~~~ 220 (568)
.||.+.| .++.|+ +.+.++++++.|++..||.. .... . . ....
T Consensus 187 ~GH~GSV-Nsikfh--~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 187 TGHTGSV-NSIKFH--NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred cccccce-eeEEec--cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 8999999 999999 78899999999999999972 1100 0 0 1123
Q ss_pred eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 008363 221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG 299 (568)
Q Consensus 221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg 299 (568)
++..+.+|.+.|.+..|...+ ..+++++.|. ..+||+.++ .++..+.+|....+.++-+|..+++++++.|.
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg------~Q~vTaSWDRTAnlwDVEtg-e~v~~LtGHd~ELtHcstHptQrLVvTsSrDt 336 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGG------QQMVTASWDRTANLWDVETG-EVVNILTGHDSELTHCSTHPTQRLVVTSSRDT 336 (481)
T ss_pred eeeeeeccccceEehhhhcCc------ceeeeeeccccceeeeeccC-ceeccccCcchhccccccCCcceEEEEeccCc
Confidence 677889999999999999998 8999999998 999999998 88999999999999999999999999999999
Q ss_pred cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 300 AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 300 ~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+.++||+|..- +.+..|+||...|+++.|..+. .+++|+.|.+|++||+.+.
T Consensus 337 TFRLWDFReaI---------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM 388 (481)
T KOG0300|consen 337 TFRLWDFREAI---------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM 388 (481)
T ss_pred eeEeccchhhc---------------ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccc
Confidence 99999997422 5667999999999999998754 5899999999999999654
No 88
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=4.5e-22 Score=201.25 Aligned_cols=223 Identities=19% Similarity=0.287 Sum_probs=192.7
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPR 160 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~ 160 (568)
.+.+|.+=+...++|-+... ..|++|+.|+.|.+|.......+.+|.+|.. ++++-|.
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~---------~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~ 122 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDK---------GRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDS 122 (745)
T ss_pred ecccCcceeeccceeccccC---------cceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEeccccc
Confidence 34567773443378876332 4799999999999999999999999999877 6889999
Q ss_pred eEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 161 FVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 161 ~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
++++|+...|...+.+|+..| +++..- |++ .++|||.|.+|++|.-. +.+++|.+|+..|+.+++-++
T Consensus 123 TakvW~~~~l~~~l~gH~asV-WAv~~l--~e~-~~vTgsaDKtIklWk~~--------~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 123 TAKVWRIGELVYSLQGHTASV-WAVASL--PEN-TYVTGSADKTIKLWKGG--------TLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred ceEEecchhhhcccCCcchhe-eeeeec--CCC-cEEeccCcceeeeccCC--------chhhhhccchhheeeeEEecC
Confidence 999999999999999999999 999977 665 99999999999999854 788999999999999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
+ -|+||+.|| |++|++. + .++..+.+|+..|+++...+++..++++++|++++||+. +
T Consensus 191 ~-------~flScsNDg~Ir~w~~~-g-e~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~----------~-- 249 (745)
T KOG0301|consen 191 S-------HFLSCSNDGSIRLWDLD-G-EVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK----------D-- 249 (745)
T ss_pred C-------CeEeecCCceEEEEecc-C-ceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeec----------C--
Confidence 5 789999999 9999994 4 788889999999999998888899999999999999998 2
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
.+.+.+.-....||++.+-++|. |++|+.||.|+||...
T Consensus 250 ------e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 250 ------ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ------ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 33456665566899999988776 7788889999999875
No 89
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.8e-22 Score=190.72 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=185.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..--.| ++.+++-+|.| .+|+.|+..|.|++|.+.+|..+..+
T Consensus 77 ~~v~Pg-~v~al~s~n~G----------~~l~ag~i~g~lYlWelssG~LL~v~-------------------------- 119 (476)
T KOG0646|consen 77 YIVLPG-PVHALASSNLG----------YFLLAGTISGNLYLWELSSGILLNVL-------------------------- 119 (476)
T ss_pred hccccc-ceeeeecCCCc----------eEEEeecccCcEEEEEeccccHHHHH--------------------------
Confidence 334455 66699999999 78888889999999999999988776
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCC---CCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVAS---DSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~---~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..|-..| +|+.|+ .||.+|++|+.||.|.+|.+..- .......+++.|..|+-+|+++...+.+ ...+++
T Consensus 120 ~aHYQ~I-TcL~fs--~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg----~~~rl~ 192 (476)
T KOG0646|consen 120 SAHYQSI-TCLKFS--DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG----TNARLY 192 (476)
T ss_pred Hhhccce-eEEEEe--CCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC----ccceEE
Confidence 7899999 999999 89999999999999999987421 1112457899999999999999998875 346899
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-CCCCCccCccccceE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-ATGKPFAGTKQQGLH 329 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~~~~~~~~l~ 329 (568)
|+|.|. +++||+..+ ..+.++ ..+..+++++.+|-++.+++|+.+|.|.+.++....-... +. +.........+.
T Consensus 193 TaS~D~t~k~wdlS~g-~LLlti-~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~-~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLG-VLLLTI-TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVN-QKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEeccc-eeeEEE-ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccc-ccccccccceee
Confidence 999998 999999987 444443 2367799999999999999999999999998865431000 00 000011223456
Q ss_pred EEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 330 LVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 330 ~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
.+.||.+ +|+|++++-||.+|++|+.||.|.|||+.+....+.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 7889998 999999999999999999999999999987766654
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=9.4e-22 Score=175.94 Aligned_cols=223 Identities=20% Similarity=0.343 Sum_probs=175.3
Q ss_pred eEEEeeccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363 91 RVVLCLAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF 168 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 168 (568)
.+..+.+|.| ++|.++|-. .| .+||+++.||.|.||.-.+++-.+. +.
T Consensus 48 ll~~L~Gh~G-PVwqv~wahPk~G----------~iLAScsYDgkVIiWke~~g~w~k~-~e------------------ 97 (299)
T KOG1332|consen 48 LLAELTGHSG-PVWKVAWAHPKFG----------TILASCSYDGKVIIWKEENGRWTKA-YE------------------ 97 (299)
T ss_pred eeeEecCCCC-CeeEEeecccccC----------cEeeEeecCceEEEEecCCCchhhh-hh------------------
Confidence 4556789999 888999976 55 8999999999999999988743322 11
Q ss_pred eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC------
Q 008363 169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES------ 242 (568)
Q Consensus 169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------ 242 (568)
...|...| .+|+|.|+.-|-.|++|+.||.|.|.+++.... ........+|.-.|+++.|.|..-
T Consensus 98 -----~~~h~~SV-NsV~wapheygl~LacasSDG~vsvl~~~~~g~---w~t~ki~~aH~~GvnsVswapa~~~g~~~~ 168 (299)
T KOG1332|consen 98 -----HAAHSASV-NSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG---WTTSKIVFAHEIGVNSVSWAPASAPGSLVD 168 (299)
T ss_pred -----hhhhcccc-eeecccccccceEEEEeeCCCcEEEEEEcCCCC---ccchhhhhccccccceeeecCcCCCccccc
Confidence 16899999 999999988888999999999999999986521 133445678999999999999731
Q ss_pred --CCCCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEccccccCCC
Q 008363 243 --DSDSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 243 --~~~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
-....+.|+||+.|. |+||+..+..-.+ .++.+|.+.|..++|.|.- .+|++++.||+|.||-.+.-.
T Consensus 169 ~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~---- 244 (299)
T KOG1332|consen 169 QGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY---- 244 (299)
T ss_pred cCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc----
Confidence 001236799999999 9999998764233 4588999999999999964 689999999999999886311
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++ .....+..-...++.+.||..|.+|+.++.|+.|.+|.-.
T Consensus 245 ---e~------wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 ---EP------WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---Cc------ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 11 1112333355789999999999999999999999999754
No 91
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=186.33 Aligned_cols=197 Identities=16% Similarity=0.193 Sum_probs=170.2
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
++..+|.. ..+++|+.|..+.++|.+.++.+..+ .||...| +.
T Consensus 224 ald~~~s~----------~~ilTGG~d~~av~~d~~s~q~l~~~--------------------------~Gh~kki-~~ 266 (506)
T KOG0289|consen 224 ALDIIPSS----------SKILTGGEDKTAVLFDKPSNQILATL--------------------------KGHTKKI-TS 266 (506)
T ss_pred EEeecCCC----------CcceecCCCCceEEEecchhhhhhhc--------------------------cCcceEE-EE
Confidence 67777775 68999999999999999998888776 8999998 99
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI 263 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~ 263 (568)
+.++ ++...+++++.|-.|+||..... ........|..+|+.+..+|.| .||++++.|+ ..+.|+
T Consensus 267 v~~~--~~~~~v~~aSad~~i~vws~~~~------s~~~~~~~h~~~V~~ls~h~tg------eYllsAs~d~~w~Fsd~ 332 (506)
T KOG0289|consen 267 VKFH--KDLDTVITASADEIIRVWSVPLS------SEPTSSRPHEEPVTGLSLHPTG------EYLLSASNDGTWAFSDI 332 (506)
T ss_pred EEec--cchhheeecCCcceEEeeccccc------cCccccccccccceeeeeccCC------cEEEEecCCceEEEEEc
Confidence 9988 77889999999999999998765 4556677899999999999999 9999999999 999999
Q ss_pred CCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 264 RDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 264 ~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
+++ ..+..... ..-.+++.+|+|||..+.+|..||.|+|||+.. +. .+..|.+|+++|..+
T Consensus 333 ~~g-~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks--------~~--------~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 333 SSG-SQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS--------QT--------NVAKFPGHTGPVKAI 395 (506)
T ss_pred cCC-cEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC--------cc--------ccccCCCCCCceeEE
Confidence 988 55433322 233479999999999999999999999999954 22 236889999999999
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 342 QVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
+|+.+|-+|++++.|+.|++||++..+.
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcc
Confidence 9999999999999999999999975443
No 92
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=2.9e-21 Score=205.19 Aligned_cols=273 Identities=14% Similarity=0.153 Sum_probs=195.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceec
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
..+|.+..|++|..+|++ ..+|+|+ .||.++||+... ....... ... +...+
T Consensus 8 wv~H~~~~IfSIdv~pdg----------~~~aTgGq~~d~~~~iW~~~~vl~~~~~~------------~~~---l~k~l 62 (942)
T KOG0973|consen 8 WVNHNEKSIFSIDVHPDG----------VKFATGGQVLDGGIVIWSQDPVLDEKEEK------------NEN---LPKHL 62 (942)
T ss_pred ccccCCeeEEEEEecCCc----------eeEecCCccccccceeeccccccchhhhh------------hcc---cchhh
Confidence 468999899999999999 8999999 899999999875 1111000 000 00112
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC------------CCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD------------SSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~------------~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
.....|.+.| .|+.|+ +||.+||+|++|+.|.||...... .....+.+..+.+|.+.|.+++|+|
T Consensus 63 ~~m~~h~~sv-~CVR~S--~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 63 CTMDDHDGSV-NCVRFS--PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred eeeccccCce-eEEEEC--CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 2236799999 999999 999999999999999999987310 0123457888999999999999999
Q ss_pred CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC------
Q 008363 240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD------ 312 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~------ 312 (568)
++ .+||+++.|. |.+|+.++. ..+..+.+|.+.|-.+.|.|-|+||++-++|++|++|++.++.-.
T Consensus 140 ~~------~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~p 212 (942)
T KOG0973|consen 140 DD------SLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKP 212 (942)
T ss_pred Cc------cEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccc
Confidence 98 8999999999 999999988 889999999999999999999999999999999999996542100
Q ss_pred ---CC-----------CCCCCcc----------------CccccceEEEecCCCCEEEEEEecC-----CC---------
Q 008363 313 ---VP-----------ATGKPFA----------------GTKQQGLHLVNCSSFAIWSVQVSRL-----TG--------- 348 (568)
Q Consensus 313 ---~~-----------~~g~~~~----------------~~~~~~l~~~~~h~~~V~~l~~sp~-----~~--------- 348 (568)
.+ ..|+.+. ......-..+-||..++.++.|+|. ..
T Consensus 213 f~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 213 FEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNC 292 (942)
T ss_pred hhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCc
Confidence 00 0122111 0011112346699999999999983 12
Q ss_pred ---EEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 349 ---MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 349 ---~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
.+|+||.|++|-||.....+-.--...--...+...++++||-.|...+..+.+
T Consensus 293 ~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred ceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeE
Confidence 689999999999999854321110000001122333566666665554444333
No 93
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.88 E-value=6.5e-21 Score=194.29 Aligned_cols=276 Identities=15% Similarity=0.142 Sum_probs=213.5
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD 158 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~ 158 (568)
.-....+|... |+++++|.+. ..+++|+ .++|+||+..+.+|++++.-.-. +.|..
T Consensus 365 ~~i~~~GHR~d-VRsl~vS~d~----------~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 365 SNIEIGGHRSD-VRSLCVSSDS----------ILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred ceeeeccchhh-eeEEEeecCc----------eeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence 34456799994 5599999998 4566554 58999999999999998743211 44555
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCce-e-----EEeeCCC
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRP-L-----LCFSADT 229 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~-~-----~~~~~h~ 229 (568)
.+.+.+.+... ...+...|.+.| ++++-+ |++..+++|+.|.+|++||+.-... ....+. + +++ .-.
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdgaI-Wsi~~~--pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ 508 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGAI-WSISLS--PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELE 508 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccce-eeeeec--CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-ecc
Confidence 66666666655 233455899999 999977 8999999999999999999752211 000011 1 122 235
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
..|.|+.++|++ .+||.+--|. |++|-+.+- +-...+.||.-+|.|+..+||+..|++|+.|..|++|-++-
T Consensus 509 ddvL~v~~Spdg------k~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdF 581 (888)
T KOG0306|consen 509 DDVLCVSVSPDG------KLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDF 581 (888)
T ss_pred ccEEEEEEcCCC------cEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCeEEeccCCCceEEecccc
Confidence 679999999999 8999999998 999998876 66678889999999999999999999999999999998843
Q ss_pred cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
|.+ ...+.+|...|.++.|.|...++++||.|+.|+.||-..-...+....+ ....-|-++++
T Consensus 582 --------GDC--------HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H-~~ev~cLav~~ 644 (888)
T KOG0306|consen 582 --------GDC--------HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH-HSEVWCLAVSP 644 (888)
T ss_pred --------chh--------hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc-hheeeeeEEcC
Confidence 644 4688899999999999999999999999999999998765555443333 23455778899
Q ss_pred CCCceEEcccCCCCCccc
Q 008363 389 DESAITVNTPLDNTPVPL 406 (568)
Q Consensus 389 ~~~~i~~~~~~~~~~~~~ 406 (568)
.|..+...+....+.+..
T Consensus 645 ~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 645 NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred CCCeEEeccCCceeEeee
Confidence 999988888877776554
No 94
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.88 E-value=5.6e-21 Score=183.62 Aligned_cols=210 Identities=16% Similarity=0.248 Sum_probs=174.4
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+.||.-.+. .+.|+|+. ..+++++.|-.|+||.+....+...+
T Consensus 254 l~~~~Gh~kki~-~v~~~~~~----------~~v~~aSad~~i~vws~~~~s~~~~~----------------------- 299 (506)
T KOG0289|consen 254 LATLKGHTKKIT-SVKFHKDL----------DTVITASADEIIRVWSVPLSSEPTSS----------------------- 299 (506)
T ss_pred hhhccCcceEEE-EEEeccch----------hheeecCCcceEEeeccccccCcccc-----------------------
Confidence 445779999565 99999999 78999999999999999886554443
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..|...| +.+.-+ |.|++|++++.||+..+.|++++ ..+..... ..-.+++.+|+|+| .+
T Consensus 300 ---~~h~~~V-~~ls~h--~tgeYllsAs~d~~w~Fsd~~~g------~~lt~vs~~~s~v~~ts~~fHpDg------Li 361 (506)
T KOG0289|consen 300 ---RPHEEPV-TGLSLH--PTGEYLLSASNDGTWAFSDISSG------SQLTVVSDETSDVEYTSAAFHPDG------LI 361 (506)
T ss_pred ---ccccccc-eeeeec--cCCcEEEEecCCceEEEEEccCC------cEEEEEeeccccceeEEeeEcCCc------eE
Confidence 6788898 999977 88999999999999999999977 55544432 23458999999999 89
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
|++|..|+ |+|||+..+ ..+..|.+|.++|..|+|+-+|.+|+++++|+.|++||+|+.. . +
T Consensus 362 fgtgt~d~~vkiwdlks~-~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--------n--------~ 424 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQ-TNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--------N--------F 424 (506)
T ss_pred EeccCCCceEEEEEcCCc-cccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc--------c--------c
Confidence 99999999 999999988 5788899999999999999999999999999999999998743 1 2
Q ss_pred EEEecC-CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 329 HLVNCS-SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 329 ~~~~~h-~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.++.-. ...|.++.|.+.|.+|+.++.|=.|++++-.+..+.
T Consensus 425 kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~ 467 (506)
T KOG0289|consen 425 KTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWT 467 (506)
T ss_pred ceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccce
Confidence 233322 247899999999999999998888888876554443
No 95
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.88 E-value=6.4e-22 Score=193.66 Aligned_cols=211 Identities=20% Similarity=0.340 Sum_probs=163.8
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|...+. +.+|+|... ..+++++.||++|||++...+....+. +-.+.
T Consensus 264 TKGHia~lt-~g~whP~~k---------~~FlT~s~DgtlRiWdv~~~k~q~qVi-------------k~k~~------- 313 (641)
T KOG0772|consen 264 TKGHIAELT-CGCWHPDNK---------EEFLTCSYDGTLRIWDVNNTKSQLQVI-------------KTKPA------- 313 (641)
T ss_pred cCCceeeee-ccccccCcc---------cceEEecCCCcEEEEecCCchhheeEE-------------eeccC-------
Confidence 457888454 999999986 789999999999999998844322211 11110
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCC--CeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTL--PIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~--~V~~v~~~p~~~~~~~~~~la 251 (568)
.+-.-.+ ++++|+ ++|.+||+|+.||.|.+|+...... .+.. .-.+|.. .|+||+|+++| ++|+
T Consensus 314 ~g~Rv~~-tsC~~n--rdg~~iAagc~DGSIQ~W~~~~~~v----~p~~~vk~AH~~g~~Itsi~FS~dg------~~Ll 380 (641)
T KOG0772|consen 314 GGKRVPV-TSCAWN--RDGKLIAAGCLDGSIQIWDKGSRTV----RPVMKVKDAHLPGQDITSISFSYDG------NYLL 380 (641)
T ss_pred CCcccCc-eeeecC--CCcchhhhcccCCceeeeecCCccc----ccceEeeeccCCCCceeEEEecccc------chhh
Confidence 2333444 899999 9999999999999999999864422 3333 4467887 89999999999 9999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccC
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
|-+.|. +++||+|+..+++....+-.. +-+.++|||+.+.|++|.. .|++.+||..++.
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d------------ 448 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD------------ 448 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee------------
Confidence 999998 999999999888876654433 3478999999999999854 5679999985533
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
.+..+.-....|..+.|+|.-+.|+.++.||++++|-=
T Consensus 449 ----~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 449 ----TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ----eEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 23455556788899999999889999999999999854
No 96
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.88 E-value=3e-21 Score=182.54 Aligned_cols=226 Identities=19% Similarity=0.327 Sum_probs=169.6
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
....+..+.+|.+ -=+.++|||-.. +.|++|.--+.|++|...++.-...
T Consensus 200 ~~~Pl~t~~ghk~-EGy~LdWSp~~~---------g~LlsGDc~~~I~lw~~~~g~W~vd-------------------- 249 (440)
T KOG0302|consen 200 EFRPLFTFNGHKG-EGYGLDWSPIKT---------GRLLSGDCVKGIHLWEPSTGSWKVD-------------------- 249 (440)
T ss_pred ccCceEEecccCc-cceeeecccccc---------cccccCccccceEeeeeccCceeec--------------------
Confidence 3445667788887 445999999654 6899998889999999988543311
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
...+.+|+.+| -.|+|+|..+ ..|++||.||+|+|||++.+.. +.....++|.+.|+.|.|+...
T Consensus 250 ---~~Pf~gH~~SV-EDLqWSptE~-~vfaScS~DgsIrIWDiRs~~~----~~~~~~kAh~sDVNVISWnr~~------ 314 (440)
T KOG0302|consen 250 ---QRPFTGHTKSV-EDLQWSPTED-GVFASCSCDGSIRIWDIRSGPK----KAAVSTKAHNSDVNVISWNRRE------ 314 (440)
T ss_pred ---Cccccccccch-hhhccCCccC-ceEEeeecCceEEEEEecCCCc----cceeEeeccCCceeeEEccCCc------
Confidence 11227899999 9999998866 4999999999999999997732 4445558999999999999998
Q ss_pred cEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccC----CCCCCCC
Q 008363 248 NVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYD----VPATGKP 319 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~----~~~~g~~ 319 (568)
.+||+|++|| ++|||+|+-. .++..|.-|..+|++|.|+|. ...|+++|.|.+|.|||+..-..+ .+..+.
T Consensus 315 ~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~- 393 (440)
T KOG0302|consen 315 PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEG- 393 (440)
T ss_pred ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccc-
Confidence 6999999999 9999999643 778899999999999999995 456777788999999999643321 000010
Q ss_pred ccCccccceEEEecC--CCCEEEEEEecC-CCEEEEEeCCCeEEEE
Q 008363 320 FAGTKQQGLHLVNCS--SFAIWSVQVSRL-TGMVAYCSADGTVHRF 362 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h--~~~V~~l~~sp~-~~~l~s~s~Dg~v~iw 362 (568)
+..-..+ .+..| ...|-.|.|++. ..+|++.+.||.-.+.
T Consensus 394 L~dlPpQ---LLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfk 436 (440)
T KOG0302|consen 394 LQDLPPQ---LLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFK 436 (440)
T ss_pred hhcCCce---eEEEecchhHhhhheeccCCCCeEEEecccceeEEE
Confidence 1111112 22334 346788999998 4889999999864443
No 97
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=173.77 Aligned_cols=213 Identities=15% Similarity=0.193 Sum_probs=177.8
Q ss_pred cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363 155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI 232 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 232 (568)
.+..++++++|...+ +..+..+|...| ..++-+ .|...|++|+.|..|.+||+.++ +.++.|.+|.+.|
T Consensus 34 tcGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~s--~Dnskf~s~GgDk~v~vwDV~TG------kv~Rr~rgH~aqV 104 (307)
T KOG0316|consen 34 TCGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAALS--SDNSKFASCGGDKAVQVWDVNTG------KVDRRFRGHLAQV 104 (307)
T ss_pred EcCCCceEEeecccccceeeeecCCCcee-eecccc--ccccccccCCCCceEEEEEcccC------eeeeeccccccee
Confidence 467899999999988 788889999999 888866 78889999999999999999988 8999999999999
Q ss_pred eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
+.++|+... .++++|+-|. +++||.|+.. .|++.+....+.|.++... +..|++|+.||+++.||+|.
T Consensus 105 NtV~fNees------SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~-- 174 (307)
T KOG0316|consen 105 NTVRFNEES------SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK-- 174 (307)
T ss_pred eEEEecCcc------eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec--
Confidence 999999998 7999999998 9999999764 7888888888999999987 67899999999999999976
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceee-eecccCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFL-CGSVTED 389 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~s~~~~ 389 (568)
|+.. -..-..+|+++.|+++++.++.++.|++|++.|-+++++.+.+..++...+. -..+...
T Consensus 175 ------G~l~----------sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 175 ------GTLS----------SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred ------ceee----------hhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc
Confidence 5332 2234468999999999999999999999999999999998887766554433 2234444
Q ss_pred CCceEEcccCCCC
Q 008363 390 ESAITVNTPLDNT 402 (568)
Q Consensus 390 ~~~i~~~~~~~~~ 402 (568)
...+..++-.+.+
T Consensus 239 dthV~sgSEDG~V 251 (307)
T KOG0316|consen 239 DTHVFSGSEDGKV 251 (307)
T ss_pred ceeEEeccCCceE
Confidence 4444444443333
No 98
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.88 E-value=9.6e-22 Score=191.47 Aligned_cols=205 Identities=20% Similarity=0.245 Sum_probs=164.1
Q ss_pred ccCCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 154 KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
++++.|..|++|.+.. |+.++.||...| ..+.|+ .+|..|++++.|+.|++||+.++ +++..|.. ..
T Consensus 231 LS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~s--~~g~~fLS~sfD~~lKlwDtETG------~~~~~f~~-~~ 300 (503)
T KOG0282|consen 231 LSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASFN--NCGTSFLSASFDRFLKLWDTETG------QVLSRFHL-DK 300 (503)
T ss_pred EecCCCceEEEEEEecCcceehhhhcchhhh-hhhhcc--ccCCeeeeeecceeeeeeccccc------eEEEEEec-CC
Confidence 5789999999999977 899999999999 999999 89999999999999999999988 88887743 45
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.++|+.|+|++ ++.|++|+.|+ |+.||+|++ ..+..+..|-+.|..+.|-++|+.++++++|++++||+.+..
T Consensus 301 ~~~cvkf~pd~-----~n~fl~G~sd~ki~~wDiRs~-kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~ 374 (503)
T KOG0282|consen 301 VPTCVKFHPDN-----QNIFLVGGSDKKIRQWDIRSG-KVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIP 374 (503)
T ss_pred CceeeecCCCC-----CcEEEEecCCCcEEEEeccch-HHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCC
Confidence 68999999997 48999999998 999999998 788888899999999999999999999999999999997543
Q ss_pred cc----------CCCC-----CCCCccC---------------ccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCC
Q 008363 310 AY----------DVPA-----TGKPFAG---------------TKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 310 ~~----------~~~~-----~g~~~~~---------------~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg 357 (568)
.. ..|. .+..+.. .....-..+.||.. --..+.|||||.+|++|+.||
T Consensus 375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG 454 (503)
T KOG0282|consen 375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDG 454 (503)
T ss_pred ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCc
Confidence 10 0000 0000000 00001113456653 345689999999999999999
Q ss_pred eEEEEEcCCCeeeccCC
Q 008363 358 TVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 358 ~v~iwd~~~~~~~~~~~ 374 (568)
.+.+||..+.++.....
T Consensus 455 ~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 455 KVNFWDWKTTKLVSKLK 471 (503)
T ss_pred cEEEeechhhhhhhccc
Confidence 99999998876655433
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.6e-21 Score=202.29 Aligned_cols=206 Identities=18% Similarity=0.256 Sum_probs=164.1
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+.||.+.+. ++.|+.++ +|++++.|.+||||++....|+..
T Consensus 362 ~~ef~GHt~DIL-DlSWSKn~-----------fLLSSSMDKTVRLWh~~~~~CL~~------------------------ 405 (712)
T KOG0283|consen 362 FCEFKGHTADIL-DLSWSKNN-----------FLLSSSMDKTVRLWHPGRKECLKV------------------------ 405 (712)
T ss_pred hhhhhccchhhe-ecccccCC-----------eeEeccccccEEeecCCCcceeeE------------------------
Confidence 344789999777 99999997 999999999999999999999987
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..|...| +||+|+|. |.++|++|+-||.|+||++... +.+... .-...|++++|.|+| ++.+
T Consensus 406 ---F~HndfV-TcVaFnPv-DDryFiSGSLD~KvRiWsI~d~------~Vv~W~-Dl~~lITAvcy~PdG------k~av 467 (712)
T KOG0283|consen 406 ---FSHNDFV-TCVAFNPV-DDRYFISGSLDGKVRLWSISDK------KVVDWN-DLRDLITAVCYSPDG------KGAV 467 (712)
T ss_pred ---EecCCee-EEEEeccc-CCCcEeecccccceEEeecCcC------eeEeeh-hhhhhheeEEeccCC------ceEE
Confidence 4688999 99999987 4579999999999999999865 443333 334779999999999 8999
Q ss_pred EEcCCC-EEEEECCCCCcceeee--CCC------CCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDI--HPA------PKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~--~~h------~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
.|+.+| +++|++... +....+ ..| ...|+.+.|.|.. ..|++.+.|..|||||.+. -.
T Consensus 468 IGt~~G~C~fY~t~~l-k~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--------~~--- 535 (712)
T KOG0283|consen 468 IGTFNGYCRFYDTEGL-KLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--------KD--- 535 (712)
T ss_pred EEEeccEEEEEEccCC-eEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccc--------hh---
Confidence 999999 999999976 333222 111 2279999999844 3588888999999999954 11
Q ss_pred CccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 322 GTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
.++.|+|+.. .=....|+.+|++|++++.|..|+||++....
T Consensus 536 -----lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 536 -----LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred -----hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 2245555432 22456899999999999999999999985443
No 100
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=8.4e-21 Score=175.20 Aligned_cols=254 Identities=13% Similarity=0.183 Sum_probs=188.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----ceeeEEeccCC----------------cc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSM----------------KE 155 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~----------------~~ 155 (568)
.+|.. .|+++.|.+.| +.+|+|+.|++|+|||.... .+......|.. +.
T Consensus 10 s~h~D-lihdVs~D~~G----------RRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~ 78 (361)
T KOG2445|consen 10 SGHKD-LIHDVSFDFYG----------RRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVAT 78 (361)
T ss_pred cCCcc-eeeeeeecccC----------ceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEE
Confidence 46776 88899999999 89999999999999996542 33334444433 67
Q ss_pred CCCCceEEEeecce----e-------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363 156 GTDPRFVKLEPVFR----C-------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC 224 (568)
Q Consensus 156 ~~~~~~v~~~~~~~----~-------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 224 (568)
++.|+.+.+|.... + ..++......| +.|.|.|..-|-.||+++.||+||||+.-.............
T Consensus 79 cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV-~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~E 157 (361)
T KOG2445|consen 79 CSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSV-TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHE 157 (361)
T ss_pred EecCCceeeeeecccccccccceeEEEEEeecCCcce-eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhh
Confidence 88999999998732 1 12334456778 999999888898999999999999999764432222233333
Q ss_pred ee-------CCCCCeeEEEEccCCCCCCCCcEEEEEcCC------CEEEEECCCCC---cceeeeCCCCCCeEEEEEcCC
Q 008363 225 FS-------ADTLPIRAVSWAPAESDSDSANVILTAGHG------GLKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD 288 (568)
Q Consensus 225 ~~-------~h~~~V~~v~~~p~~~~~~~~~~las~s~d------~v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~ 288 (568)
+. .+..+..||.|+|.. .++.+||.|+.. .+.||...... ..+..+.+|+++|+.|+|.|.
T Consensus 158 i~~~~~pp~~~~~~~~CvsWn~sr---~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 158 IQNVIDPPGKNKQPCFCVSWNPSR---MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhccCCcccccCcceEEeecccc---ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 33 467788999999763 466789999887 48898776554 334667799999999999995
Q ss_pred ----CCEEEEEeCCCcEEEEEccccccCC----CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 289 ----PGCVILSFDDGAMRIVSLLKAAYDV----PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 289 ----~~~l~s~~~dg~I~lwd~~~~~~~~----~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
...|++++.|| |+||.+....... ...+........+.+..+..|++.||.+.|+-.|..|++.|.||.|+
T Consensus 235 ~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VR 313 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVR 313 (361)
T ss_pred cCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceee
Confidence 36788899999 9999997422110 01111222223456677889999999999999999999999999999
Q ss_pred EEEcC
Q 008363 361 RFQLT 365 (568)
Q Consensus 361 iwd~~ 365 (568)
+|...
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99874
No 101
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=1.3e-20 Score=170.34 Aligned_cols=219 Identities=14% Similarity=0.223 Sum_probs=173.1
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCCCCce
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGTDPRF 161 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~~~~~ 161 (568)
..+|.+.+. .++|.|..+ .+|++++.|.+|++||+..+++...+..... +.+..+..
T Consensus 60 ~~gh~~svd-ql~w~~~~~---------d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~ 129 (313)
T KOG1407|consen 60 YRGHTDSVD-QLCWDPKHP---------DLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDR 129 (313)
T ss_pred ccCCCcchh-hheeCCCCC---------cceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCccc
Confidence 468888566 999999887 8999999999999999999988877643322 22223333
Q ss_pred EEEeecceec-ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 162 VKLEPVFRCS-MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 162 v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
+...+..... .........+ .-+.|+ .++++++.....|+|.|.....- +++..+++|.....||.|+|+
T Consensus 130 it~id~r~~~~~~~~~~~~e~-ne~~w~--~~nd~Fflt~GlG~v~ILsypsL------kpv~si~AH~snCicI~f~p~ 200 (313)
T KOG1407|consen 130 ITFIDARTYKIVNEEQFKFEV-NEISWN--NSNDLFFLTNGLGCVEILSYPSL------KPVQSIKAHPSNCICIEFDPD 200 (313)
T ss_pred EEEEEecccceeehhccccee-eeeeec--CCCCEEEEecCCceEEEEecccc------ccccccccCCcceEEEEECCC
Confidence 3333332211 1112233344 668888 56677777777899999988744 899999999999999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
| ++||+|+.|. +.|||+... .+++.+..+.-+|..|.|+.||++|+++++|..|-|=++ .+|..
T Consensus 201 G------ryfA~GsADAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~v--------etGd~ 265 (313)
T KOG1407|consen 201 G------RYFATGSADALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEV--------ETGDR 265 (313)
T ss_pred C------ceEeeccccceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEec--------ccCCe
Confidence 9 9999999999 999999966 888999999999999999999999999999999998888 35755
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D 356 (568)
+ ..+. +.++...|+|+|...+||.++.|
T Consensus 266 ~--------~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 266 V--------WEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred E--------EEee-ccCCceeEEecCCCceeeEEecC
Confidence 4 4544 77889999999999999998866
No 102
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.1e-21 Score=176.07 Aligned_cols=234 Identities=15% Similarity=0.199 Sum_probs=175.2
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.-|.|++. ++...+... +++++|+.||.|.|||++....... .+-+.+-..+ ....+..
T Consensus 40 r~HgGsvN-sL~id~teg---------rymlSGgadgsi~v~Dl~n~t~~e~----------s~li~k~~c~-v~~~h~~ 98 (397)
T KOG4283|consen 40 RPHGGSVN-SLQIDLTEG---------RYMLSGGADGSIAVFDLQNATDYEA----------SGLIAKHKCI-VAKQHEN 98 (397)
T ss_pred ccCCCccc-eeeeccccc---------eEEeecCCCccEEEEEeccccchhh----------ccceeheeee-ccccCCc
Confidence 35667555 999988765 8999999999999999987321100 0000000000 0122346
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+|.-.| .++.|-|...| ++.+++.|.++++||.++. +....|+ -.+.|++-+|+|-.. +..+||+|..
T Consensus 99 ~Hky~i-ss~~WyP~DtG-mFtssSFDhtlKVWDtnTl------Q~a~~F~-me~~VYshamSp~a~---sHcLiA~gtr 166 (397)
T KOG4283|consen 99 GHKYAI-SSAIWYPIDTG-MFTSSSFDHTLKVWDTNTL------QEAVDFK-MEGKVYSHAMSPMAM---SHCLIAAGTR 166 (397)
T ss_pred cceeee-eeeEEeeecCc-eeecccccceEEEeecccc------eeeEEee-cCceeehhhcChhhh---cceEEEEecC
Confidence 899999 99999998554 9999999999999999866 5555563 367789999998651 2357777777
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCcc-----Cccccce
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFA-----GTKQQGL 328 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~-----~~~~~~l 328 (568)
|- |++-|+.++ ..-.++.+|.+.|.++.|+|...+++ +|+.||.|++||+|... |-... +...+.+
T Consensus 167 ~~~VrLCDi~SG-s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras------gcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 167 DVQVRLCDIASG-SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS------GCFRVLDQHNTKRPPIL 239 (397)
T ss_pred CCcEEEEeccCC-cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc------ceeEEeecccCccCccc
Confidence 77 999999988 88899999999999999999888765 56779999999998753 21110 1111333
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
.+-..|.+.|.+++|+.++.++++++.|..+++|+...+.-
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 44567889999999999999999999999999999987753
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=6e-22 Score=202.54 Aligned_cols=213 Identities=15% Similarity=0.257 Sum_probs=174.6
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..+.+..+..|.. .+.++.|++..+ .+|++|+.||.|++||+.......++
T Consensus 122 rnk~l~~f~EH~R-s~~~ldfh~tep---------~iliSGSQDg~vK~~DlR~~~S~~t~------------------- 172 (839)
T KOG0269|consen 122 RNKLLTVFNEHER-SANKLDFHSTEP---------NILISGSQDGTVKCWDLRSKKSKSTF------------------- 172 (839)
T ss_pred cchhhhHhhhhcc-ceeeeeeccCCc---------cEEEecCCCceEEEEeeecccccccc-------------------
Confidence 3455556778988 555999999988 89999999999999999986665554
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+....| ..|.|+|.+ +..|+++...|.+.+||++.. .++...+.+|.++|.|+.|+|++
T Consensus 173 -------~~nSESi-RDV~fsp~~-~~~F~s~~dsG~lqlWDlRqp-----~r~~~k~~AH~GpV~c~nwhPnr------ 232 (839)
T KOG0269|consen 173 -------RSNSESI-RDVKFSPGY-GNKFASIHDSGYLQLWDLRQP-----DRCEKKLTAHNGPVLCLNWHPNR------ 232 (839)
T ss_pred -------cccchhh-hceeeccCC-CceEEEecCCceEEEeeccCc-----hhHHHHhhcccCceEEEeecCCC------
Confidence 5567778 999999885 579999999999999999965 36777889999999999999988
Q ss_pred cEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccC
Q 008363 248 NVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
.+|||||.|+ |+|||..+.. .++.++. -..+|.+|.|-|..++.++.+ .|-.|+|||++...
T Consensus 233 ~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY------------ 299 (839)
T KOG0269|consen 233 EWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY------------ 299 (839)
T ss_pred ceeeecCCCccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeecccc------------
Confidence 8999999999 9999998653 3444443 256789999999877655543 38899999997543
Q ss_pred ccccceEEEecCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~ 365 (568)
-+..++..|...++.++|... ...|.+++.||+|..-.+.
T Consensus 300 ---IP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 300 ---IPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred ---ccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 566899999999999999763 4788999999988765553
No 104
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.88 E-value=3.7e-21 Score=204.34 Aligned_cols=231 Identities=19% Similarity=0.268 Sum_probs=173.9
Q ss_pred cceEEE-eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 89 LPRVVL-CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 89 ~p~~~~-~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
+|..+. ...|.+ .|.|++|+|+| .+||+|++|+.|.||.... .......+. ......+.-|.
T Consensus 58 l~k~l~~m~~h~~-sv~CVR~S~dG----------~~lAsGSDD~~v~iW~~~~-~~~~~~fgs----~g~~~~vE~wk- 120 (942)
T KOG0973|consen 58 LPKHLCTMDDHDG-SVNCVRFSPDG----------SYLASGSDDRLVMIWERAE-IGSGTVFGS----TGGAKNVESWK- 120 (942)
T ss_pred cchhheeeccccC-ceeEEEECCCC----------CeEeeccCcceEEEeeecc-cCCcccccc----cccccccceee-
Confidence 454444 456888 66699999999 8999999999999999885 111111111 01111122222
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
+...+.+|...| ..+.|+ |++.+||+++.|++|.||+..+. ..+..+.+|.+.|..+.|.|-|
T Consensus 121 --~~~~l~~H~~DV-~Dv~Ws--p~~~~lvS~s~DnsViiwn~~tF------~~~~vl~~H~s~VKGvs~DP~G------ 183 (942)
T KOG0973|consen 121 --VVSILRGHDSDV-LDVNWS--PDDSLLVSVSLDNSVIIWNAKTF------ELLKVLRGHQSLVKGVSWDPIG------ 183 (942)
T ss_pred --EEEEEecCCCcc-ceeccC--CCccEEEEecccceEEEEccccc------eeeeeeecccccccceEECCcc------
Confidence 334458899999 999999 78999999999999999999876 8899999999999999999999
Q ss_pred cEEEEEcCCC-EEEEECCCCC---------------------------------------------------cceeeeCC
Q 008363 248 NVILTAGHGG-LKFWDIRDPF---------------------------------------------------RPLWDIHP 275 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~---------------------------------------------------~~~~~~~~ 275 (568)
+||||-++|+ |+||++.+.. ..-..+-+
T Consensus 184 ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvG 263 (942)
T KOG0973|consen 184 KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVG 263 (942)
T ss_pred CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeec
Confidence 8999999999 9999975521 00112247
Q ss_pred CCCCeEEEEEcCC-----CC------------EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 276 APKFIYGLDWLPD-----PG------------CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 276 h~~~i~~l~~sp~-----~~------------~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
|..++.++.|+|. .. .+++|+.|++|-||.... .+|+ +-...--...|
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--------~RPl-------~vi~~lf~~SI 328 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--------PRPL-------FVIHNLFNKSI 328 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--------CCch-------hhhhhhhcCce
Confidence 8888889999872 11 567788899999999832 3332 11222335689
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
..++|+|+|..|+.||.||+|.++.++...
T Consensus 329 ~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 329 VDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred eeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999999999997543
No 105
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.87 E-value=2.8e-21 Score=178.22 Aligned_cols=218 Identities=16% Similarity=0.239 Sum_probs=173.8
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..|-+..+..|...+. ++.|+|.. .+|++|+.|++|++||+......+.+ ++
T Consensus 161 ~hPvIRTlYDH~devn-~l~FHPre----------~ILiS~srD~tvKlFDfsK~saKrA~--------------K~--- 212 (430)
T KOG0640|consen 161 RHPVIRTLYDHVDEVN-DLDFHPRE----------TILISGSRDNTVKLFDFSKTSAKRAF--------------KV--- 212 (430)
T ss_pred CCceEeehhhccCccc-ceeecchh----------heEEeccCCCeEEEEecccHHHHHHH--------------HH---
Confidence 4588889999999666 99999999 89999999999999999873322211 00
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~ 244 (568)
......| .++.|+ |.|++|++|..--++++||+.+- ++...- .+|++.|++|.+++.+
T Consensus 213 -------~qd~~~v-rsiSfH--PsGefllvgTdHp~~rlYdv~T~------QcfvsanPd~qht~ai~~V~Ys~t~--- 273 (430)
T KOG0640|consen 213 -------FQDTEPV-RSISFH--PSGEFLLVGTDHPTLRLYDVNTY------QCFVSANPDDQHTGAITQVRYSSTG--- 273 (430)
T ss_pred -------hhcccee-eeEeec--CCCceEEEecCCCceeEEeccce------eEeeecCcccccccceeEEEecCCc---
Confidence 2334566 899988 88999999999999999999976 444322 4689999999999999
Q ss_pred CCCcEEEEEcCCC-EEEEECCCCCcceeeeC-CCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIH-PAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-~h~~-~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
++.++++.|| |+|||--+. +|+.++. .|.+ .|.+..|..+++||+++|.|..|+||.+.. |+++.
T Consensus 274 ---~lYvTaSkDG~IklwDGVS~-rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t--------~R~l~ 341 (430)
T KOG0640|consen 274 ---SLYVTASKDGAIKLWDGVSN-RCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIST--------GRMLK 341 (430)
T ss_pred ---cEEEEeccCCcEEeeccccH-HHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecC--------CceEE
Confidence 8999999999 999998877 8887764 5544 589999999999999999999999999843 33321
Q ss_pred C---c--------------------------cccceEE------------EecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 322 G---T--------------------------KQQGLHL------------VNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 322 ~---~--------------------------~~~~l~~------------~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
. . ....+.. --+|++++..+.-+|.+..+++|+.|-.++
T Consensus 342 ~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raR 421 (430)
T KOG0640|consen 342 EYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRAR 421 (430)
T ss_pred EEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceee
Confidence 0 0 0000111 137999999999999999999999999999
Q ss_pred EEEc
Q 008363 361 RFQL 364 (568)
Q Consensus 361 iwd~ 364 (568)
+|--
T Consensus 422 FWyr 425 (430)
T KOG0640|consen 422 FWYR 425 (430)
T ss_pred eeee
Confidence 9964
No 106
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.87 E-value=1e-21 Score=181.94 Aligned_cols=234 Identities=15% Similarity=0.231 Sum_probs=189.8
Q ss_pred CcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe
Q 008363 70 GDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY 149 (568)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~ 149 (568)
|.+.-.++.....+.++..-...-.+.-|+..+. |+.|+.+. ..||+|+.||.|+||.+.+|+|++.+.
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDs----------EMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDS----------EMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccH----------HHhhccCcCCcEEEEEEecchHHHHhh
Confidence 4444444443444444433333344566777455 99999999 799999999999999999999998761
Q ss_pred ccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363 150 LSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT 229 (568)
Q Consensus 150 ~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~ 229 (568)
..|+..| +|+.|+ .|+..|++++.|.+++|.-+.++ +++..|++|+
T Consensus 303 -------------------------rAHtkGv-t~l~FS--rD~SqiLS~sfD~tvRiHGlKSG------K~LKEfrGHs 348 (508)
T KOG0275|consen 303 -------------------------RAHTKGV-TCLSFS--RDNSQILSASFDQTVRIHGLKSG------KCLKEFRGHS 348 (508)
T ss_pred -------------------------hhhccCe-eEEEEc--cCcchhhcccccceEEEeccccc------hhHHHhcCcc
Confidence 4799999 999999 99999999999999999999977 8999999999
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLP-DPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd 305 (568)
+.|+...|.++| +.+++++.|+ |++|+..+. .|+.++. +..-+|+++...| +...++++...++|++.+
T Consensus 349 Syvn~a~ft~dG------~~iisaSsDgtvkvW~~Ktt-eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn 421 (508)
T KOG0275|consen 349 SYVNEATFTDDG------HHIISASSDGTVKVWHGKTT-ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMN 421 (508)
T ss_pred ccccceEEcCCC------CeEEEecCCccEEEecCcch-hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEe
Confidence 999999999999 8999999999 999999987 7776665 3455688888777 456788888899999999
Q ss_pred ccccccCCCCCCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 306 LLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+ .|+.+ +.+.. ..+...+.+.+|.|.++...+.|+.++.|.+.++++++.
T Consensus 422 ~---------qGQvV--------rsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t 474 (508)
T KOG0275|consen 422 M---------QGQVV--------RSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT 474 (508)
T ss_pred c---------cceEE--------eeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee
Confidence 8 35443 44442 234566778999999999999999999999999988865
No 107
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=3.1e-20 Score=164.17 Aligned_cols=225 Identities=17% Similarity=0.232 Sum_probs=164.0
Q ss_pred CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
...|++|+|+|.| ++.|+|+...+++|...+.-..++ ..|. ....+..+.. +....|.+
T Consensus 32 sqairav~fhp~g----------~lyavgsnskt~ric~yp~l~~~r--~~he--a~~~pp~v~~-------kr~khhkg 90 (350)
T KOG0641|consen 32 SQAIRAVAFHPAG----------GLYAVGSNSKTFRICAYPALIDLR--HAHE--AAKQPPSVLC-------KRNKHHKG 90 (350)
T ss_pred hhheeeEEecCCC----------ceEEeccCCceEEEEccccccCcc--cccc--cccCCCeEEe-------eeccccCc
Confidence 3467799999999 899999999999998776522111 1111 1112222222 22257899
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----------------
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD---------------- 243 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~---------------- 243 (568)
.| +|.+|+ |.|.+|++|+.|.+|++..++....+.. -.-..|.-|.+.|..++|-.+...
T Consensus 91 si-yc~~ws--~~geliatgsndk~ik~l~fn~dt~~~~-g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 91 SI-YCTAWS--PCGELIATGSNDKTIKVLPFNADTCNAT-GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred cE-EEEEec--CccCeEEecCCCceEEEEeccccccccc-CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 99 999999 8899999999999999987765432111 112234445555555555332100
Q ss_pred ------------------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC--C-----CCCeEEEEEcCCCCE
Q 008363 244 ------------------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP--A-----PKFIYGLDWLPDPGC 291 (568)
Q Consensus 244 ------------------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~--h-----~~~i~~l~~sp~~~~ 291 (568)
+-+.-+|++|+.|. |++||+|-+ .++.++.. | ...|.+++..|.|+.
T Consensus 167 ~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 167 ITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred EeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 00236899999998 999999977 66655531 2 356899999999999
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
|++|-.|....+||+|- |+++ +.+..|...|.++.|+|...||++|+.|..|++-|+..
T Consensus 246 l~sg~~dssc~lydirg--------~r~i--------q~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRG--------GRMI--------QRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeeccCCCceEEEEeeC--------Ccee--------eeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 99999999999999963 6554 68899999999999999999999999999999999954
No 108
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.1e-20 Score=183.21 Aligned_cols=237 Identities=16% Similarity=0.229 Sum_probs=179.0
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
+|...++ +++.++++ ++||+|+.|..|.||+..+.+.++.+ .+
T Consensus 200 ~h~keil-~~avS~Dg----------kylatgg~d~~v~Iw~~~t~ehv~~~--------------------------~g 242 (479)
T KOG0299|consen 200 GHVKEIL-TLAVSSDG----------KYLATGGRDRHVQIWDCDTLEHVKVF--------------------------KG 242 (479)
T ss_pred cccceeE-EEEEcCCC----------cEEEecCCCceEEEecCcccchhhcc--------------------------cc
Confidence 7888566 99999999 89999999999999999998888776 89
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
|.+.| .+++|- .....|++++.|++|++|++... ..+.++.+|.+.|.+|...... ..+..|+.|
T Consensus 243 hr~~V-~~L~fr--~gt~~lys~s~Drsvkvw~~~~~------s~vetlyGHqd~v~~IdaL~re------R~vtVGgrD 307 (479)
T KOG0299|consen 243 HRGAV-SSLAFR--KGTSELYSASADRSVKVWSIDQL------SYVETLYGHQDGVLGIDALSRE------RCVTVGGRD 307 (479)
T ss_pred cccce-eeeeee--cCccceeeeecCCceEEEehhHh------HHHHHHhCCccceeeechhccc------ceEEecccc
Confidence 99999 999988 56678999999999999999865 7788889999999999888876 566666689
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEE---
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLV--- 331 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~--- 331 (568)
. +++|++... ....+.+|.+.+-|++|-.+ ..+++|+.+|.|.||++-+ .+++.... -+.+...
T Consensus 308 rT~rlwKi~ee--sqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~K--------Kkplf~~~~AHgv~~~~~~ 376 (479)
T KOG0299|consen 308 RTVRLWKIPEE--SQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLK--------KKPLFTSRLAHGVIPELDP 376 (479)
T ss_pred ceeEEEecccc--ceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecc--------cCceeEeeccccccCCccc
Confidence 8 999999543 34457788999999999854 5699999999999999954 22221000 0001110
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCCCCcceeeee-cccCCCCceEEc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSRNRPMHFLCG-SVTEDESAITVN 396 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~-s~~~~~~~i~~~ 396 (568)
..+...|++|+..|...++++|+.+|.|++|.+..+.-. .....-+...|.+. .++.+|..|..+
T Consensus 377 ~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 377 VNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred cccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112247999999999999999999999999999766211 11111223333333 456666655544
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=2.7e-21 Score=182.00 Aligned_cols=239 Identities=16% Similarity=0.174 Sum_probs=183.5
Q ss_pred CCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------
Q 008363 82 PIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------- 153 (568)
Q Consensus 82 ~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------- 153 (568)
.|+.-.....+..+.+|.| .|..|++.. + .+++++.|.+|+.|.+... .+.++.+...
T Consensus 92 kiWnlsqR~~~~~f~AH~G-~V~Gi~v~~-~-----------~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 92 KIWNLSQRECIRTFKAHEG-LVRGICVTQ-T-----------SFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHR 157 (433)
T ss_pred EEEehhhhhhhheeecccC-ceeeEEecc-c-----------ceEEecCCcceeeeeccCC-cceeeecccccccccccc
Confidence 3333334445667889999 777999887 3 5888999999999997763 5555544332
Q ss_pred ---ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363 154 ---KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD 228 (568)
Q Consensus 154 ---~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 228 (568)
.-.+.+..+.+|+... ....+.-....| .++.|+|... .+|++|..|+.|.|||++.. .+++.+. -
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti-~svkfNpvET-sILas~~sDrsIvLyD~R~~------~Pl~KVi-~ 228 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI-SSVKFNPVET-SILASCASDRSIVLYDLRQA------SPLKKVI-L 228 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCce-eEEecCCCcc-hheeeeccCCceEEEecccC------Cccceee-e
Confidence 3345666788898765 333334445667 8899996644 58888889999999999987 5555332 2
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
...-+.|+|+|.. ..|++|++|. ++.+|+|....++....+|...|.+++|+|.|+-+++|+.|.+|+||..+
T Consensus 229 ~mRTN~IswnPea------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 229 TMRTNTICWNPEA------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred eccccceecCccc------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecC
Confidence 3446789999977 8899999998 99999999889999999999999999999999999999999999999996
Q ss_pred ccccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
... .- -.+ ..--+.|.++.||.|.+|+++||.|+.|++|...
T Consensus 303 ~~~--------SR--------diYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 303 HGH--------SR--------DIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred CCc--------ch--------hhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 422 10 011 1112578999999999999999999999999874
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.5e-20 Score=188.77 Aligned_cols=211 Identities=18% Similarity=0.274 Sum_probs=170.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
+.||+|.. ..|++|+..++...... ..+...| ++|.|+ ++|.+|++|..+
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~--------------------------~~~~~~v-tSv~ws--~~G~~LavG~~~ 238 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELC--------------------------SFGEELV-TSVKWS--PDGSHLAVGTSD 238 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeE--------------------------ecCCCce-EEEEEC--CCCCEEEEeecC
Confidence 47888765 57999999987644322 2236777 999999 899999999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI 280 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i 280 (568)
|.|.|||.... +.+..+.+ |...|-+++|+ . ..+.+|+.++ |..+|++.....+..+.+|...|
T Consensus 239 g~v~iwD~~~~------k~~~~~~~~h~~rvg~laW~--~------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeV 304 (484)
T KOG0305|consen 239 GTVQIWDVKEQ------KKTRTLRGSHASRVGSLAWN--S------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEV 304 (484)
T ss_pred CeEEEEehhhc------cccccccCCcCceeEEEecc--C------ceEEEecCCCcEEEEEEecchhhhhhhhccccee
Confidence 99999999866 67777877 99999999999 3 5899999999 99999998855555588999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-CCEEEEEe--CCC
Q 008363 281 YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-TGMVAYCS--ADG 357 (568)
Q Consensus 281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~~~l~s~s--~Dg 357 (568)
..+.|++|+.++++|+.|+.+.|||... . .++..+..|.++|..++|+|. ..+||+|+ .|+
T Consensus 305 CgLkws~d~~~lASGgnDN~~~Iwd~~~--------~--------~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 305 CGLKWSPDGNQLASGGNDNVVFIWDGLS--------P--------EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred eeeEECCCCCeeccCCCccceEeccCCC--------c--------cccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 9999999999999999999999999932 2 334688999999999999998 48888876 799
Q ss_pred eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 358 ~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.|++||..++.........-+..-+ .++...+.|..
T Consensus 369 ~i~fwn~~~g~~i~~vdtgsQVcsL--~Wsk~~kEi~s 404 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVDTGSQVCSL--IWSKKYKELLS 404 (484)
T ss_pred EEEEEEcCCCcEecccccCCceeeE--EEcCCCCEEEE
Confidence 9999999988777654333222222 46666655554
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.2e-20 Score=176.67 Aligned_cols=296 Identities=14% Similarity=0.187 Sum_probs=208.4
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
.+.| ++|.|+ |...+|++|+.||+++||-+..... ..++.+.--..+|.+..|.|+|. ..+++++...
T Consensus 213 ~~~I-~sv~FH--p~~plllvaG~d~~lrifqvDGk~N----~~lqS~~l~~fPi~~a~f~p~G~-----~~i~~s~rrk 280 (514)
T KOG2055|consen 213 HGGI-TSVQFH--PTAPLLLVAGLDGTLRIFQVDGKVN----PKLQSIHLEKFPIQKAEFAPNGH-----SVIFTSGRRK 280 (514)
T ss_pred cCCc-eEEEec--CCCceEEEecCCCcEEEEEecCccC----hhheeeeeccCccceeeecCCCc-----eEEEecccce
Confidence 4567 999999 6677999999999999999986532 45566655678999999999992 4888888888
Q ss_pred -EEEEECCCCC-cceeeeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 258 -LKFWDIRDPF-RPLWDIHPAP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 258 -v~lwD~~~~~-~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
++.||+.+.. ..+..+.++. ..+.....+|++.+|++.|..|.|.|... .+++.+ .+++ -
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLha--------kT~eli--------~s~K-i 343 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHA--------KTKELI--------TSFK-I 343 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehh--------hhhhhh--------heee-e
Confidence 9999998764 3334444554 34678899999999999999999999988 346554 3544 5
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCccccccccccc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKTVHDAG 414 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~~~~~~g 414 (568)
.+.|..++|+.+++.|++++.+|.|++||+....+..........+-...+.+.++..+++|+..+.+.+........-+
T Consensus 344 eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~ 423 (514)
T KOG2055|consen 344 EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFAST 423 (514)
T ss_pred ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccC
Confidence 67899999999999999999999999999988766554333333333333566788888888776666433211111111
Q ss_pred c-ccccceeeccCCCCCCCCcCCCCccCCCCCccccccCCCCCCCCcchhhHHhhhccCCCCCCCcccccccCCceeEEe
Q 008363 415 E-RSMRSFLIESNSSKSPNDKKGKNVLSSDNQPLALCYGNEPGEESEGDMTLAALKNKQKPKSRSSSKKKEEDDQAMVCI 493 (568)
Q Consensus 415 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~kkk~k~~~~~~~~~~~~~~~~~~ 493 (568)
. .++..+ +| .+.+...+ .-..+.|.|+++.. .+ ++...+|++
T Consensus 424 ~PkPik~~---dN-Ltt~Itsl---~Fn~d~qiLAiaS~-----------------~~-------------knalrLVHv 466 (514)
T KOG2055|consen 424 NPKPIKTV---DN-LTTAITSL---QFNHDAQILAIASR-----------------VK-------------KNALRLVHV 466 (514)
T ss_pred CCCchhhh---hh-hheeeeee---eeCcchhhhhhhhh-----------------cc-------------ccceEEEec
Confidence 0 111111 11 00000000 00112244444322 11 267789998
Q ss_pred ccccccccCCCcccCCCCCCceecCCceeEEeeeeccCCCCc-ceeEEecCccceEEEeeeec
Q 008363 494 DEEATDIQGKENEKGEAGNGIEVLPPKVVAMHRVRWNMNKGS-ERWLCYGGAGGIIRCQEIRV 555 (568)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wn~~~~~-~~~l~~~~~~g~~r~~~~~~ 555 (568)
++- ..+.+||+...+|++|| +|.++. .++||+|+++|.|++=++.+
T Consensus 467 PS~---------------TVFsNfP~~n~~vg~vt-c~aFSP~sG~lAvGNe~grv~l~kL~h 513 (514)
T KOG2055|consen 467 PSC---------------TVFSNFPTSNTKVGHVT-CMAFSPNSGYLAVGNEAGRVHLFKLHH 513 (514)
T ss_pred cce---------------eeeccCCCCCCcccceE-EEEecCCCceEEeecCCCceeeEeecc
Confidence 877 67889999999999999 999986 89999999999999988765
No 112
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.86 E-value=2.4e-20 Score=188.90 Aligned_cols=254 Identities=15% Similarity=0.171 Sum_probs=193.5
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--EEeccCC----------------ccC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--AIYLSSM----------------KEG 156 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--~l~~~~~----------------~~~ 156 (568)
..+|...+ +.+++.+.. .+++++.||+++||+-...+.+. .++++.. ..+
T Consensus 10 l~gH~~DV-r~v~~~~~~-----------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g 77 (745)
T KOG0301|consen 10 LEGHKSDV-RAVAVTDGV-----------CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVG 77 (745)
T ss_pred eccCccch-heeEecCCe-----------EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEee
Confidence 46888855 477776665 89999999999999986644433 2333322 236
Q ss_pred CCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 157 TDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 157 ~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
+.|..+-++.... ...++.||...| .|++-. .++ .+++||.|.++++|... ++...+.+|+..|++
T Consensus 78 ~~D~~i~v~~~~~~~P~~~LkgH~snV-C~ls~~--~~~-~~iSgSWD~TakvW~~~--------~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQAEPLYTLKGHKSNV-CSLSIG--EDG-TLISGSWDSTAKVWRIG--------ELVYSLQGHTASVWA 145 (745)
T ss_pred cccceEEEEecCCCCchhhhhccccce-eeeecC--CcC-ceEecccccceEEecch--------hhhcccCCcchheee
Confidence 6777777776655 456778999999 888855 565 49999999999999977 666779999999999
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
+++-|.+ .++||+.|. |++|.- ...+.+|.+|.+.|..+++.|++. +++++.||.|++|++
T Consensus 146 v~~l~e~-------~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~------- 207 (745)
T KOG0301|consen 146 VASLPEN-------TYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL------- 207 (745)
T ss_pred eeecCCC-------cEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-------
Confidence 9999985 899999999 999985 377889999999999999998765 889999999999999
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI 393 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i 393 (568)
+|+ ++..+.+|+.-|+++....++..+++++.|++++||+.. ...+...-..+-.+.+.. ..++-|
T Consensus 208 --~ge--------~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~--L~NgDI 273 (745)
T KOG0301|consen 208 --DGE--------VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV--LLNGDI 273 (745)
T ss_pred --cCc--------eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE--eeCCCE
Confidence 454 457999999999999988889999999999999999986 333332222222233222 233445
Q ss_pred EEcccCCCCCc
Q 008363 394 TVNTPLDNTPV 404 (568)
Q Consensus 394 ~~~~~~~~~~~ 404 (568)
+++...+.+.+
T Consensus 274 vvg~SDG~VrV 284 (745)
T KOG0301|consen 274 VVGGSDGRVRV 284 (745)
T ss_pred EEeccCceEEE
Confidence 55555555543
No 113
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=1.9e-20 Score=178.12 Aligned_cols=253 Identities=15% Similarity=0.241 Sum_probs=189.4
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.-+|++.+. +++|+|..+ ..||+|+.|.+|.||.++.+.....+.. ....+
T Consensus 77 v~GHt~~vL-Di~w~PfnD---------~vIASgSeD~~v~vW~IPe~~l~~~lte-------------------pvv~L 127 (472)
T KOG0303|consen 77 VCGHTAPVL-DIDWCPFND---------CVIASGSEDTKVMVWQIPENGLTRDLTE-------------------PVVEL 127 (472)
T ss_pred ccCcccccc-ccccCccCC---------ceeecCCCCceEEEEECCCcccccCccc-------------------ceEEE
Confidence 468999666 999999887 8999999999999999998655544311 12233
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.||...| ..|+|+|... +.|++++.|.+|.||++.++ ..+.++. |...|+++.|+.+| .+|+|++
T Consensus 128 ~gH~rrV-g~V~wHPtA~-NVLlsag~Dn~v~iWnv~tg------eali~l~-hpd~i~S~sfn~dG------s~l~Ttc 192 (472)
T KOG0303|consen 128 YGHQRRV-GLVQWHPTAP-NVLLSAGSDNTVSIWNVGTG------EALITLD-HPDMVYSMSFNRDG------SLLCTTC 192 (472)
T ss_pred eecceeE-EEEeecccch-hhHhhccCCceEEEEeccCC------ceeeecC-CCCeEEEEEeccCC------ceeeeec
Confidence 8999999 9999998866 69999999999999999988 6666665 99999999999999 8999999
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCC-eEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKF-IYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
.|. |||||.+.+ ..+....+|.+. -..+.|..+|..+-+|- .+..+-|||..++..+ -.+.
T Consensus 193 kDKkvRv~dpr~~-~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP-------------~~~~ 258 (472)
T KOG0303|consen 193 KDKKVRVIDPRRG-TVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP-------------IALQ 258 (472)
T ss_pred ccceeEEEcCCCC-cEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCc-------------ceeE
Confidence 999 999999988 777666777764 36778988998444442 3889999999776522 1123
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCccccc
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKK 408 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~ 408 (568)
.+. ....|.---|.++.++|..++ .|+.|+.|++.. ..+..|++ +.+.+..|...+.+..|.
T Consensus 259 elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~--------d~P~~hyl--------n~f~S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 259 ELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN--------EPPFVHYL--------NTFSSKEPQRGMGFMPKR 321 (472)
T ss_pred Eec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecC--------CCceeEEe--------cccccCCccccccccccc
Confidence 444 344566667888887776655 799999999853 22334444 344455666677777777
Q ss_pred ccccccccccccee
Q 008363 409 TVHDAGERSMRSFL 422 (568)
Q Consensus 409 ~~~~~g~~~~~~~~ 422 (568)
.++...++++|.+.
T Consensus 322 Gl~Vs~cEI~rfyK 335 (472)
T KOG0303|consen 322 GLDVSKCEIARFYK 335 (472)
T ss_pred cccchHHHHHHHHH
Confidence 76555554444444
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=179.08 Aligned_cols=220 Identities=18% Similarity=0.205 Sum_probs=172.9
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceE
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFV 162 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v 162 (568)
+..+ .+.++.|.+++ ..+++++.|+.+++|++...+...+|.+|+. ++++.+..+
T Consensus 217 Gs~g-~it~~d~d~~~----------~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 217 GSLG-NITSIDFDSDN----------KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred ccCC-CcceeeecCCC----------ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 4444 55599999999 7888899999999999999999999988876 789999999
Q ss_pred EEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 163 KLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 163 ~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
+.|++.. |.+....-.. |..|..+ ...+++|..|++|++||.++. .+......|. .|+++..+++
T Consensus 286 K~WDl~k~~C~kt~l~~S~--cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~------~~~~sv~~gg-~vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQ--CNDIVCS----ISDVISGHFDKKVRFWDIRSA------DKTRSVPLGG-RVTSLDLSMD 352 (459)
T ss_pred hhhhhhhhheecccccccc--ccceEec----ceeeeecccccceEEEeccCC------ceeeEeecCc-ceeeEeeccC
Confidence 9999976 5443332111 1344432 458899999999999999977 7777776665 8999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
+ .-|.+++.|. +.+.|+++. .....+.. -....+.+.|||++.|+++|+.||.|+||++.
T Consensus 353 g------~~lLsssRDdtl~viDlRt~-eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~-------- 417 (459)
T KOG0288|consen 353 G------LELLSSSRDDTLKVIDLRTK-EIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF-------- 417 (459)
T ss_pred C------eEEeeecCCCceeeeecccc-cEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc--------
Confidence 9 6677777776 999999986 33333321 12237899999999999999999999999993
Q ss_pred CCCCccCccccceEEEecCC--CCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSS--FAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~--~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
+|++. ..+.... ..|+++.|+|.|..|++++.++.+.+|.
T Consensus 418 tgKlE--------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 418 TGKLE--------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CceEE--------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 46553 2333332 3699999999999999999999999993
No 115
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.3e-20 Score=176.02 Aligned_cols=222 Identities=21% Similarity=0.409 Sum_probs=163.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
|++|...+ .+....-+++|.|+.|-.|.|||+.-...+. .+.. |+.....+... ..-.....+|+..| .
T Consensus 178 C~ewld~~---~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~L-----Gs~~sk~~~k~-~k~~~~~~gHTdav-l 247 (463)
T KOG0270|consen 178 CIEWLDHG---SKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTL-----GSKASKKKKKK-GKRSNSASGHTDAV-L 247 (463)
T ss_pred hhhhhhcC---CCCCCCcceEEEeccCceeEEeccccccccccceee-----chhhhhhhhhh-cccccccccchHHH-H
Confidence 66776542 1122333799999999999999987522111 0000 00000000000 00011125899999 9
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
+|+|+-.- ...||+||.|.+|++||+.++ +|..++..|...|.++.|+|.. +.+|++|+.|+ |.+.|
T Consensus 248 ~Ls~n~~~-~nVLaSgsaD~TV~lWD~~~g------~p~~s~~~~~k~Vq~l~wh~~~-----p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 248 ALSWNRNF-RNVLASGSADKTVKLWDVDTG------KPKSSITHHGKKVQTLEWHPYE-----PSVLLSGSYDGTVALKD 315 (463)
T ss_pred HHHhcccc-ceeEEecCCCceEEEEEcCCC------CcceehhhcCCceeEEEecCCC-----ceEEEeccccceEEeee
Confidence 99998442 358999999999999999988 8899998999999999999997 69999999999 99999
Q ss_pred CCCCCc--ceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 263 IRDPFR--PLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 263 ~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
.|.... ..+.+ .+.|-.++|.|.... ++++..||+|+-+|+|+. | +++.++..|.++|.
T Consensus 316 ~R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~-------~--------~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 316 CRDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP-------G--------KPVWTLKAHDDEIS 377 (463)
T ss_pred ccCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCC-------C--------CceeEEEeccCCcc
Confidence 996421 22334 677999999997654 555677999999999974 3 45579999999999
Q ss_pred EEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 340 SVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 340 ~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|+++..- .+|+|++.|+.|++|++..
T Consensus 378 gl~~n~~~p~~l~t~s~d~~Vklw~~~~ 405 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTASTDKVVKLWKFDV 405 (463)
T ss_pred eEEecCCCCcceeeccccceEEEEeecC
Confidence 99999874 7899999999999999964
No 116
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=3.4e-21 Score=195.66 Aligned_cols=195 Identities=13% Similarity=0.229 Sum_probs=172.3
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.+|.. .|.+|.|++.. .+|++|+.+|+|++||+...+.+++|
T Consensus 65 S~~~hes-pIeSl~f~~~E----------~LlaagsasgtiK~wDleeAk~vrtL------------------------- 108 (825)
T KOG0267|consen 65 SLTGHES-PIESLTFDTSE----------RLLAAGSASGTIKVWDLEEAKIVRTL------------------------- 108 (825)
T ss_pred eeeccCC-cceeeecCcch----------hhhcccccCCceeeeehhhhhhhhhh-------------------------
Confidence 3689999 66699999998 79999999999999999998888776
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.||...+ .+|+|+ |-+.++++|+.|+.+++||++.. .|...+.+|...|..+.|+|+| .+++++
T Consensus 109 -tgh~~~~-~sv~f~--P~~~~~a~gStdtd~~iwD~Rk~------Gc~~~~~s~~~vv~~l~lsP~G------r~v~~g 172 (825)
T KOG0267|consen 109 -TGHLLNI-TSVDFH--PYGEFFASGSTDTDLKIWDIRKK------GCSHTYKSHTRVVDVLRLSPDG------RWVASG 172 (825)
T ss_pred -hccccCc-ceeeec--cceEEeccccccccceehhhhcc------CceeeecCCcceeEEEeecCCC------ceeecc
Confidence 8899997 999999 77899999999999999999965 7899999999999999999999 999999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
++|. ++|||+..+ ..+..|..|.+.+.++.|+|..-.++.|+.|++|++||++++. -+....
T Consensus 173 ~ed~tvki~d~~ag-k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe----------------~I~s~~ 235 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAG-KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFE----------------VISSGK 235 (825)
T ss_pred CCcceeeeeccccc-ccccccccccccccccccCchhhhhccCCCCceeeeeccceeE----------------EeeccC
Confidence 9998 999999987 7788899999999999999999999999999999999996543 112333
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
.....|.++.|+|++..+++|..+.
T Consensus 236 ~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 236 PETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred CccCCceeeeecCCceeeecCchhh
Confidence 4467899999999999888887553
No 117
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=7.4e-20 Score=176.72 Aligned_cols=209 Identities=19% Similarity=0.316 Sum_probs=165.7
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
+|+..+. ++.|+..-. ++||+|+.|.+|.+||+.++++..++ ..
T Consensus 241 gHTdavl-~Ls~n~~~~---------nVLaSgsaD~TV~lWD~~~g~p~~s~--------------------------~~ 284 (463)
T KOG0270|consen 241 GHTDAVL-ALSWNRNFR---------NVLASGSADKTVKLWDVDTGKPKSSI--------------------------TH 284 (463)
T ss_pred cchHHHH-HHHhccccc---------eeEEecCCCceEEEEEcCCCCcceeh--------------------------hh
Confidence 6888555 999998776 89999999999999999999998886 67
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
|.+.| .+++|+|. ....|++|+.|++|.+.|.+.... ......+ .+.|-.++|.|.. +..|+++.+|
T Consensus 285 ~~k~V-q~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~---s~~~wk~---~g~VEkv~w~~~s-----e~~f~~~tdd 351 (463)
T KOG0270|consen 285 HGKKV-QTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSN---SGKEWKF---DGEVEKVAWDPHS-----ENSFFVSTDD 351 (463)
T ss_pred cCCce-eEEEecCC-CceEEEeccccceEEeeeccCccc---cCceEEe---ccceEEEEecCCC-----ceeEEEecCC
Confidence 88999 99999976 447999999999999999985311 1111222 6779999999986 5788888899
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
| |+-+|+|....+++++..|.+.|.+|++++.-. +|++++.|+.|++|++.... ++.+. -+.+.
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~------~~~v~------~~~~~-- 417 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS------PKSVK------EHSFK-- 417 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC------Ccccc------ccccc--
Confidence 9 999999999899999999999999999998654 56677889999999995422 21110 01111
Q ss_pred CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCe
Q 008363 335 SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 335 ~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
-+...|+++.|+- .+|+.|+..+.++|||+.+..
T Consensus 418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 1236677888875 678888889999999996543
No 118
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=4.8e-19 Score=164.22 Aligned_cols=268 Identities=12% Similarity=0.151 Sum_probs=176.4
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEe--ccCC------------cc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIY--LSSM------------KE 155 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~--~~~~------------~~ 155 (568)
+.+|.+.+. +++|+.+| +.||+++.|++|+||++.... +++.-. +|.. +.
T Consensus 82 LKgH~~~vt-~~~FsSdG----------K~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~ 150 (420)
T KOG2096|consen 82 LKGHKKEVT-DVAFSSDG----------KKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVS 150 (420)
T ss_pred hhccCCcee-eeEEcCCC----------ceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEE
Confidence 578999555 99999999 899999999999999998721 221110 0100 00
Q ss_pred CCCCceEEEeecce---e------c-----ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 156 GTDPRFVKLEPVFR---C------S-----MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 156 ~~~~~~v~~~~~~~---~------~-----~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
......+.++.... . . .....|...+ ..+- ...++.+|++++.|.+|.||++. + +.
T Consensus 151 ~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~-i~iG--iA~~~k~imsas~dt~i~lw~lk-G------q~ 220 (420)
T KOG2096|consen 151 VKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDI-INIG--IAGNAKYIMSASLDTKICLWDLK-G------QL 220 (420)
T ss_pred EccCCEEEEEEeeecccCCCCcccccccccccchhcccce-EEEe--ecCCceEEEEecCCCcEEEEecC-C------ce
Confidence 11111111111110 0 0 0001233333 2332 22667899999999999999998 4 67
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-------cceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-------RPLWDIHPAPKFIYGLDWLPDPGCVI 293 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-------~~~~~~~~h~~~i~~l~~sp~~~~l~ 293 (568)
+..+......-+..+.+|+| .+||+++--- |++|.+--.. ..+..+.+|...|..++|+++.+.++
T Consensus 221 L~~idtnq~~n~~aavSP~G------RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~v 294 (420)
T KOG2096|consen 221 LQSIDTNQSSNYDAAVSPDG------RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAV 294 (420)
T ss_pred eeeeccccccccceeeCCCC------cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeE
Confidence 77776666667788899999 8999999887 9999874322 34477889999999999999999999
Q ss_pred EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363 294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 373 (568)
+.+.||+++|||+.-.. ......+.++ ..-..+....+.-..+..+|.|..|+.+. ...|++|..++++.....
T Consensus 295 tvSkDG~wriwdtdVrY-~~~qDpk~Lk----~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~ 368 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTDVRY-EAGQDPKILK----EGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL 368 (420)
T ss_pred EEecCCcEEEeeccceE-ecCCCchHhh----cCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH
Confidence 99999999999985322 1101111111 00011112223334899999998777655 568999999887766554
Q ss_pred CCCCcceeeeecccCCCCceEE
Q 008363 374 SRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 374 ~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
+.--...+.|.+++.+|..++.
T Consensus 369 e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 369 EDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred HHhhcCceeeEEecCCCcEEee
Confidence 4444556777788888876653
No 119
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=3.1e-19 Score=163.44 Aligned_cols=220 Identities=16% Similarity=0.306 Sum_probs=167.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.+-+ .+.||.|.|++ ..||+-. |..|.+|++..+.. ...+.... ..
T Consensus 121 eavg-~i~cvew~Pns----------~klasm~-dn~i~l~~l~ess~~vaev~ss~---------------------s~ 167 (370)
T KOG1007|consen 121 EAVG-KINCVEWEPNS----------DKLASMD-DNNIVLWSLDESSKIVAEVLSSE---------------------SA 167 (370)
T ss_pred HHhC-ceeeEEEcCCC----------CeeEEec-cCceEEEEcccCcchheeecccc---------------------cc
Confidence 3444 44599999998 5676554 88999999998554 33321111 03
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+|.... ++-+|+|+.+|..+++.+ |+++..||+++.. +....-.+|...|.++.|+|+.. .+||||++
T Consensus 168 e~~~~f-tsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~-----~~~sI~dAHgq~vrdlDfNpnkq-----~~lvt~gD 235 (370)
T KOG1007|consen 168 EMRHSF-TSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK-----KNNSIEDAHGQRVRDLDFNPNKQ-----HILVTCGD 235 (370)
T ss_pred ccccee-cccccCCCCccceEEEeC-CCcEEEEEccchh-----hhcchhhhhcceeeeccCCCCce-----EEEEEcCC
Confidence 455666 888999988998888876 8999999999762 23334468999999999999984 88999999
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCC---------C-------C
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPA---------T-------G 317 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~---------~-------g 317 (568)
|+ |+|||+|....++..+.+|...|.++.|+|. .+.|++||.|..|.+|-....+..... . -
T Consensus 236 dgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 236 DGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred CccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 99 9999999998999999999999999999995 467778899999999987654421100 0 0
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
+++. -..+.++..|...|++++|+.-. -.+|+-+.||.+.|=.+
T Consensus 316 kpL~---dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 316 KPLQ---DGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred cccc---ccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 1110 11245788999999999999765 67889999999988665
No 120
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.83 E-value=1.7e-19 Score=174.94 Aligned_cols=223 Identities=17% Similarity=0.212 Sum_probs=179.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+.....|.-.++ +|+++|+. .++.+++.||+|.=|++.++....-+..... +++.. ....
T Consensus 135 ~~~~~~H~~s~~-~vals~d~----------~~~fsask~g~i~kw~v~tgk~~~~i~~~~e-------v~k~~--~~~~ 194 (479)
T KOG0299|consen 135 FRVIGKHQLSVT-SVALSPDD----------KRVFSASKDGTILKWDVLTGKKDRYIIERDE-------VLKSH--GNPL 194 (479)
T ss_pred ceeeccccCcce-EEEeeccc----------cceeecCCCcceeeeehhcCcccccccccch-------hhhhc--cCCC
Confidence 444567887677 99999999 8999999999999999999775533211110 00000 0000
Q ss_pred ccc-cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 172 MLK-CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 172 ~~~-~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
... .+|...+ ++++.+ +||.+||+|+.|..|.||+.++. ..+..|.+|.+.|.+++|-... +-+
T Consensus 195 k~~r~~h~kei-l~~avS--~Dgkylatgg~d~~v~Iw~~~t~------ehv~~~~ghr~~V~~L~fr~gt------~~l 259 (479)
T KOG0299|consen 195 KESRKGHVKEI-LTLAVS--SDGKYLATGGRDRHVQIWDCDTL------EHVKVFKGHRGAVSSLAFRKGT------SEL 259 (479)
T ss_pred Cccccccccee-EEEEEc--CCCcEEEecCCCceEEEecCccc------chhhcccccccceeeeeeecCc------cce
Confidence 011 3788998 999988 99999999999999999999977 8888999999999999998876 788
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
++++.|. |++|++... ..+.++.+|++.|..|.-..-++.+-+|+.|+++++|++.. ..-.
T Consensus 260 ys~s~Drsvkvw~~~~~-s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-----------------esql 321 (479)
T KOG0299|consen 260 YSASADRSVKVWSIDQL-SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-----------------ESQL 321 (479)
T ss_pred eeeecCCceEEEehhHh-HHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-----------------ccee
Confidence 8999998 999999976 77788899999999999998888888888999999999932 1123
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
.+.+|.+.+-|++|-. ...+++||.||.|.+|++...+
T Consensus 322 ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 322 IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKK 359 (479)
T ss_pred eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccC
Confidence 7889999999999975 4679999999999999996554
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.83 E-value=1.7e-19 Score=176.07 Aligned_cols=258 Identities=14% Similarity=0.195 Sum_probs=195.7
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---------------eeeEEeccCC----c
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---------------TMKAIYLSSM----K 154 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---------------~~~~l~~~~~----~ 154 (568)
..++|.. +|.++..+... +.+.+|+. |-|+|||+.... .++......+ +
T Consensus 414 ~tL~HGE-vVcAvtIS~~t----------rhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLi 481 (705)
T KOG0639|consen 414 NTLAHGE-VVCAVTISNPT----------RHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLI 481 (705)
T ss_pred hhhccCc-EEEEEEecCCc----------ceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEE
Confidence 3567777 88789998877 68888765 889999997621 1111111111 4
Q ss_pred cCCCCceEEEeecceeccccc---CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363 155 EGTDPRFVKLEPVFRCSMLKC---GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~~~~~~~---~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 231 (568)
.|.....+.+|+......... ......|++++.+ ||.+..++++.||.|.|||+... ..++.|.+|...
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~s--pDakvcFsccsdGnI~vwDLhnq------~~VrqfqGhtDG 553 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS--PDAKVCFSCCSDGNIAVWDLHNQ------TLVRQFQGHTDG 553 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC--CccceeeeeccCCcEEEEEcccc------eeeecccCCCCC
Confidence 566688889999876322211 1222336888877 88999999999999999999977 889999999999
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
+.||.++++| ..|-||+-|. ||.||+|.+.+.. . +.....|.++.++|.+.+|++|-..+.+.|.......
T Consensus 554 ascIdis~dG------tklWTGGlDntvRcWDlregrqlq-q-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 554 ASCIDISKDG------TKLWTGGLDNTVRCWDLREGRQLQ-Q-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred ceeEEecCCC------ceeecCCCccceeehhhhhhhhhh-h-hhhhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999 8999999998 9999999884333 1 1236779999999999999999999999988874311
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
-..+.-|...|.++.|.+.|+++++.+.|..+..|..--+.-... .......+|.-++.++
T Consensus 626 -----------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFq--skE~SsVlsCDIS~dd 686 (705)
T KOG0639|consen 626 -----------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISFDD 686 (705)
T ss_pred -----------------ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceee--ccccCcceeeeeccCc
Confidence 146677999999999999999999999999999998865533222 1223345666788888
Q ss_pred CceEEccc
Q 008363 391 SAITVNTP 398 (568)
Q Consensus 391 ~~i~~~~~ 398 (568)
..|+.++-
T Consensus 687 kyIVTGSG 694 (705)
T KOG0639|consen 687 KYIVTGSG 694 (705)
T ss_pred eEEEecCC
Confidence 88877653
No 122
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.83 E-value=5.5e-19 Score=171.23 Aligned_cols=214 Identities=15% Similarity=0.158 Sum_probs=164.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
-|.+ .|++++|+|.... +++|+|..-|.|-+||+.+.+.. .++++ .+..
T Consensus 184 v~~~-Rit~l~fHPt~~~--------~lva~GdK~G~VG~Wn~~~~~~d------------~d~v~----------~f~~ 232 (498)
T KOG4328|consen 184 VTDR-RITSLAFHPTENR--------KLVAVGDKGGQVGLWNFGTQEKD------------KDGVY----------LFTP 232 (498)
T ss_pred eccc-ceEEEEecccCcc--------eEEEEccCCCcEEEEecCCCCCc------------cCceE----------Eecc
Confidence 4555 6779999998642 68999999999999999642211 11111 1278
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
|..+| .++.|+|... .++++.|+||+|++-|+..... ..+.........+.++.|+... ..++.+..=
T Consensus 233 hs~~V-s~l~F~P~n~-s~i~ssSyDGtiR~~D~~~~i~----e~v~s~~~d~~~fs~~d~~~e~------~~vl~~~~~ 300 (498)
T KOG4328|consen 233 HSGPV-SGLKFSPANT-SQIYSSSYDGTIRLQDFEGNIS----EEVLSLDTDNIWFSSLDFSAES------RSVLFGDNV 300 (498)
T ss_pred CCccc-cceEecCCCh-hheeeeccCceeeeeeecchhh----HHHhhcCccceeeeeccccCCC------ccEEEeecc
Confidence 99999 9999998744 6899999999999999986622 3444443345667888888876 445555444
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
| +.+||+|+.......+.-|...|++|+++|.. .+|++++.|++++|||+|.+. ++. .++-....|
T Consensus 301 G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~------~K~------sp~lst~~H 368 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR------GKA------SPFLSTLPH 368 (498)
T ss_pred cceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhc------CCC------Ccceecccc
Confidence 5 99999999977787888888899999999965 567778889999999999865 322 122344569
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
...|.++.|||.+..|+|.+.|..|+|||..
T Consensus 369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999999998779999999999999984
No 123
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.7e-18 Score=158.91 Aligned_cols=205 Identities=14% Similarity=0.185 Sum_probs=160.5
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
-.+.++.||...|+ +++.+|-+ ..+++++.|++|++||+...+|...+
T Consensus 91 kylRYF~GH~~~V~-sL~~sP~~----------d~FlS~S~D~tvrLWDlR~~~cqg~l--------------------- 138 (311)
T KOG1446|consen 91 KYLRYFPGHKKRVN-SLSVSPKD----------DTFLSSSLDKTVRLWDLRVKKCQGLL--------------------- 138 (311)
T ss_pred ceEEEcCCCCceEE-EEEecCCC----------CeEEecccCCeEEeeEecCCCCceEE---------------------
Confidence 35777899999666 99999999 79999999999999999987776554
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC---CCCeeEEEEccCCCCCCC
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD---TLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h---~~~V~~v~~~p~~~~~~~ 246 (568)
.-... -..+|. |.|-++|+|.....|+|||++.- +..|..+|.-. ....+.|.|+|+|
T Consensus 139 -----~~~~~---pi~AfD--p~GLifA~~~~~~~IkLyD~Rs~----dkgPF~tf~i~~~~~~ew~~l~FS~dG----- 199 (311)
T KOG1446|consen 139 -----NLSGR---PIAAFD--PEGLIFALANGSELIKLYDLRSF----DKGPFTTFSITDNDEAEWTDLEFSPDG----- 199 (311)
T ss_pred -----ecCCC---cceeEC--CCCcEEEEecCCCeEEEEEeccc----CCCCceeEccCCCCccceeeeEEcCCC-----
Confidence 11112 346777 88989999988889999999865 23566666433 6678999999999
Q ss_pred CcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe---EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI---YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i---~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
++|+.+...+ +++.|.-++ .....+..+...- -..+|.||++++++|+.||+|.+|++. +|..+
T Consensus 200 -K~iLlsT~~s~~~~lDAf~G-~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~--------tg~~v-- 267 (311)
T KOG1446|consen 200 -KSILLSTNASFIYLLDAFDG-TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE--------TGKKV-- 267 (311)
T ss_pred -CEEEEEeCCCcEEEEEccCC-cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC--------CCcEe--
Confidence 6777666666 999999888 5666666554432 578899999999999999999999994 46554
Q ss_pred ccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 323 TKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 323 ~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..+.+ +.+++.++.|+|.-.+++++ +..+.+|=..
T Consensus 268 ------~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 268 ------AVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred ------eEecCCCCCCccccccCCceeeeeec--CceEEEEecc
Confidence 57777 78999999999977666665 5678888653
No 124
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2e-18 Score=165.19 Aligned_cols=191 Identities=16% Similarity=0.243 Sum_probs=151.9
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+..|+..| +-+.|+ ++|.+||+|+.|.+..||.+..... .+...++.+|..+|.-|.|+|+. ++|++|
T Consensus 220 l~~htdEV-Wfl~FS--~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSPDd------ryLlaC 287 (519)
T KOG0293|consen 220 LQDHTDEV-WFLQFS--HNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSPDD------RYLLAC 287 (519)
T ss_pred HhhCCCcE-EEEEEc--CCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECCCC------CeEEec
Confidence 37899999 999999 9999999999999999999865421 46678999999999999999999 899999
Q ss_pred cCCC-EEEEECCCCCcceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 254 GHGG-LKFWDIRDPFRPLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+.+. +.+||+.++ .....+ .+|...+.+++|.|||..+++|+.|++|..||+. |+.+ ..+
T Consensus 288 g~~e~~~lwDv~tg-d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD---------gn~~--------~~W 349 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTG-DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD---------GNIL--------GNW 349 (519)
T ss_pred CchHheeeccCCcc-hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC---------cchh--------hcc
Confidence 9998 999999988 444333 3456778999999999999999999999999993 5443 344
Q ss_pred ecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 332 NCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 332 ~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
++.+ ..|++++.++||+++++.+.|..|++++.++.....-.+.+...+-. +++.++..+.++
T Consensus 350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~--~iS~d~k~~Lvn 413 (519)
T KOG0293|consen 350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSF--SISKDGKLALVN 413 (519)
T ss_pred cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEE--EEcCCCcEEEEE
Confidence 4443 46999999999999999999999999999765433222222222222 466777666554
No 125
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=7.5e-19 Score=175.19 Aligned_cols=244 Identities=15% Similarity=0.178 Sum_probs=177.7
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c-
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K- 154 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~- 154 (568)
-..+.+|++ .|.+|...|.| .+||+|+.||+|+||.+.+|.|++++.-... +
T Consensus 393 ~lvyrGHtg-~Vr~iSvdp~G----------~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 393 ALVYRGHTG-LVRSISVDPSG----------EWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eeeEeccCC-eEEEEEecCCc----------ceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEE
Confidence 345679999 55599999999 7999999999999999999999988754332 0
Q ss_pred ------------------------------cCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEE
Q 008363 155 ------------------------------EGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLA 198 (568)
Q Consensus 155 ------------------------------~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~s 198 (568)
....+..+..|.... ...+...|...| ..|.|+ ..|++|++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i-~~vtWH--rkGDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSI-RQVTWH--RKGDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcc-ceeeee--cCCceEEE
Confidence 001111222232221 111334577888 899999 89999998
Q ss_pred EeCC---CeEEEEEccCCCCCCC-----C------------------------------ceeEEeeCCCCCeeEEEEccC
Q 008363 199 GCHD---GTVALWKFVASDSSID-----S------------------------------RPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 199 gs~D---g~I~iwd~~~~~~~~~-----~------------------------------~~~~~~~~h~~~V~~v~~~p~ 240 (568)
..-+ ..|.|.++........ + ..+..+......|..++.+|.
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCC
Confidence 7664 4577777764432100 0 000111112345778888888
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
| .-|+.++.|+ +..+|+.-..++...+.-|...+++|+|++.-.++++|+.||++.||.-.- ...+
T Consensus 619 G------Dnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~V-------Y~Dl 685 (733)
T KOG0650|consen 619 G------DNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMV-------YNDL 685 (733)
T ss_pred C------CeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeee-------ehhh
Confidence 8 6778888888 999999877789999999999999999999999999999999999996532 1222
Q ss_pred ccCccccceEEEecCCCC----EEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 320 FAGTKQQGLHLVNCSSFA----IWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~----V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
++..-..++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 686 ~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 686 LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 222333677888999865 8999999999999999999999998
No 126
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=161.75 Aligned_cols=226 Identities=14% Similarity=0.197 Sum_probs=163.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee------------eEE---ecc----------------
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM------------KAI---YLS---------------- 151 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~------------~~l---~~~---------------- 151 (568)
...+.|+|+| ..|++-+.|..+++|+++..-.. ..+ .+.
T Consensus 52 ~kgckWSPDG----------SciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP 121 (406)
T KOG2919|consen 52 LKGCKWSPDG----------SCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQP 121 (406)
T ss_pred hccceeCCCC----------ceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCC
Confidence 3478999999 79999999999999998751100 000 000
Q ss_pred -CC--ccCCCCceEEEeeccee----cccccCCcCcc--ceEEEEccCCCCCEEEEEeCCCeEEEEEcc-CCCCCCCCce
Q 008363 152 -SM--KEGTDPRFVKLEPVFRC----SMLKCGGTQSI--PLTMEWSTSPPHDYLLAGCHDGTVALWKFV-ASDSSIDSRP 221 (568)
Q Consensus 152 -~~--~~~~~~~~v~~~~~~~~----~~~~~~h~~~V--~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~ 221 (568)
+. +..+.+..|++|+.++. .-....|...+ ..+|+|+ |||.+|++|. ...|+++|+. .+.. .+
T Consensus 122 ~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs--~DGeqlfaGy-krcirvFdt~RpGr~----c~ 194 (406)
T KOG2919|consen 122 STNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS--PDGEQLFAGY-KRCIRVFDTSRPGRD----CP 194 (406)
T ss_pred ccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEec--CCCCeEeecc-cceEEEeeccCCCCC----Cc
Confidence 00 56778889999999872 22233343332 2689988 9999999887 5799999994 3321 22
Q ss_pred eEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE
Q 008363 222 LLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 222 ~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~ 295 (568)
+.... +..+-|.+++|+|..+ ..+|.++... +-|+.-... .++..+.+|.+.|+.++|.++|+.|++|
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~-----~~~a~gsY~q~~giy~~~~~-~pl~llggh~gGvThL~~~edGn~lfsG 268 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDS-----KTLAVGSYGQRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDGNKLFSG 268 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCC-----cceeeecccceeeeEecCCC-CceeeecccCCCeeeEEeccCcCeeccc
Confidence 22222 3367799999999973 7999999985 555544433 7888899999999999999999999999
Q ss_pred eC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC-CEEE--EEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 296 FD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF-AIWS--VQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 296 ~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~-~V~~--l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+. |-.|-.||+|... .++..+..|.. .-.. +...|++.+|++|+.||.|++||+..
T Consensus 269 aRk~dkIl~WDiR~~~---------------~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 269 ARKDDKILCWDIRYSR---------------DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccCCCeEEEEeehhcc---------------chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 87 8889999998744 33345566654 2223 44557799999999999999999965
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.81 E-value=2e-18 Score=175.05 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=184.8
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----------------ccCCCCceEEEe
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-----------------KEGTDPRFVKLE 165 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-----------------~~~~~~~~v~~~ 165 (568)
+++++.+|++ +.||+|..-|.|+||++...+.+..+..|.. ++++.++.|.+.
T Consensus 462 ~R~~~vSp~g----------qhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 462 FRALAVSPDG----------QHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred eEEEEECCCc----------ceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 5699999999 8999999999999999998776666666654 788999999999
Q ss_pred ecce---ecccccCCcCccceEEEEccCCCC--CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 166 PVFR---CSMLKCGGTQSIPLTMEWSTSPPH--DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 166 ~~~~---~~~~~~~h~~~V~~~v~~s~~~~g--~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
++.+ ..+++.+|...| ++|.|. ..| ..+++++.|..|.+--.+.. ......+..+.......+++++..|.
T Consensus 532 Dv~rny~l~qtld~HSssI-TsvKFa--~~gln~~MiscGADksimFr~~qk~-~~g~~f~r~t~t~~ktTlYDm~Vdp~ 607 (1080)
T KOG1408|consen 532 DVKRNYDLVQTLDGHSSSI-TSVKFA--CNGLNRKMISCGADKSIMFRVNQKA-SSGRLFPRHTQTLSKTTLYDMAVDPT 607 (1080)
T ss_pred ecccccchhhhhcccccce-eEEEEe--ecCCceEEEeccCchhhheehhccc-cCceeccccccccccceEEEeeeCCC
Confidence 8876 677889999999 999998 445 68999999988764333211 10000111111112356899999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
. .++++++.|. |+|||+.++ +....|. +|.+..-.+...|.|-||++++.|.++.+||. .+
T Consensus 608 ~------k~v~t~cQDrnirif~i~sg-Kq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df--------~s 672 (1080)
T KOG1408|consen 608 S------KLVVTVCQDRNIRIFDIESG-KQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF--------VS 672 (1080)
T ss_pred c------ceEEEEecccceEEEecccc-ceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEe--------cc
Confidence 8 8999999998 999999988 6666665 56677888999999999999999999999999 56
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
|+++ .++.||...|+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus 673 gEcv--------A~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 673 GECV--------AQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhh--------hhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 8665 68999999999999999999999999999999999853
No 128
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=5.5e-19 Score=177.80 Aligned_cols=233 Identities=17% Similarity=0.221 Sum_probs=191.3
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCC--------------
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSM-------------- 153 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~-------------- 153 (568)
|.+.....|.. +|.++..+-++ +.|++++.|-+|++|+...+ -|+.++..|..
T Consensus 64 ~~~asme~HsD-WVNDiiL~~~~----------~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~l 132 (735)
T KOG0308|consen 64 PYIASMEHHSD-WVNDIILCGNG----------KTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNEL 132 (735)
T ss_pred chhhhhhhhHh-HHhhHHhhcCC----------CceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCcee
Confidence 34445556777 88899999998 79999999999999999886 57777776665
Q ss_pred -ccCCCCceEEEeecceec-------------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363 154 -KEGTDPRFVKLEPVFRCS-------------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS 219 (568)
Q Consensus 154 -~~~~~~~~v~~~~~~~~~-------------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 219 (568)
++|+.++.|.+|++.+.. .+..|+..+| ++++-+ +.|..|++|+..+.|++||.++.
T Consensus 133 vaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si-YSLA~N--~t~t~ivsGgtek~lr~wDprt~------ 203 (735)
T KOG0308|consen 133 VASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI-YSLAMN--QTGTIIVSGGTEKDLRLWDPRTC------ 203 (735)
T ss_pred EEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccce-eeeecC--CcceEEEecCcccceEEeccccc------
Confidence 789999999999987421 1223888999 999977 78889999999999999999987
Q ss_pred ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
+.+..+.||+..|.++..+++| ..++|+|.|+ |++||+... +++.++..|...|+++..+|+-..+++|+.|
T Consensus 204 ~kimkLrGHTdNVr~ll~~dDG------t~~ls~sSDgtIrlWdLgqQ-rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 204 KKIMKLRGHTDNVRVLLVNDDG------TRLLSASSDGTIRLWDLGQQ-RCLATYIVHKEGVWALQSSPSFTHVYSGGRD 276 (735)
T ss_pred cceeeeeccccceEEEEEcCCC------CeEeecCCCceEEeeecccc-ceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence 7778888999999999999999 8999999999 999999987 9999999999999999999999999999999
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|.|+.-|++++. .+. .+-....+|..+..+....-+-+++.|+.|+-|-+.
T Consensus 277 ~~i~~Tdl~n~~---------------~~t-lick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 277 GNIYRTDLRNPA---------------KST-LICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred CcEEecccCCch---------------hhe-EeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 999999998743 111 222234556666666444444666778888888764
No 129
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.79 E-value=5.6e-18 Score=170.31 Aligned_cols=247 Identities=15% Similarity=0.169 Sum_probs=178.5
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE--EeccCC--------------
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA--IYLSSM-------------- 153 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~--l~~~~~-------------- 153 (568)
.++...++|.+ .|++++|-|.. ..|+++++|.++++||+.+..+... +.+|..
T Consensus 91 ~~lk~~~aH~n-AifDl~wapge----------~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~v 159 (720)
T KOG0321|consen 91 RQLKKPLAHKN-AIFDLKWAPGE----------SLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAV 159 (720)
T ss_pred hhhcccccccc-eeEeeccCCCc----------eeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcc
Confidence 34566789999 66699999944 7999999999999999999777766 666654
Q ss_pred -ccCCCCceEEEeeccee---------cccccCC--------------------cCccc---eEEEEccCCCCCEEEEEe
Q 008363 154 -KEGTDPRFVKLEPVFRC---------SMLKCGG--------------------TQSIP---LTMEWSTSPPHDYLLAGC 200 (568)
Q Consensus 154 -~~~~~~~~v~~~~~~~~---------~~~~~~h--------------------~~~V~---~~v~~s~~~~g~~l~sgs 200 (568)
..|..|..+.+|+...- ......| ...|- +.+.|- |...||+++
T Consensus 160 F~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk---De~tlaSag 236 (720)
T KOG0321|consen 160 FCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK---DESTLASAG 236 (720)
T ss_pred eeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe---ccceeeecc
Confidence 67889999999998641 1111122 22220 344444 778999988
Q ss_pred C-CCeEEEEEccCCCCCCCCceeEEee--CC---CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-cceeee
Q 008363 201 H-DGTVALWKFVASDSSIDSRPLLCFS--AD---TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-RPLWDI 273 (568)
Q Consensus 201 ~-Dg~I~iwd~~~~~~~~~~~~~~~~~--~h---~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~~~~~~ 273 (568)
. |+.|+|||++.........+..... -| .-.+.++.....| ..+||+|.++.|++|++++.. .++..+
T Consensus 237 a~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-----t~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 237 AADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-----TYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred CCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC-----CeEEEEecCCcEEEEeccccCcCchhhc
Confidence 8 9999999998664433333333222 23 2346777777766 377888885559999998754 455555
Q ss_pred CCCCCC-e-EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEE
Q 008363 274 HPAPKF-I-YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMV 350 (568)
Q Consensus 274 ~~h~~~-i-~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l 350 (568)
.++... + ..-..+||+.+|++|+.|...++|.+.+.. .+...+.||...|++++|.|.. .-+
T Consensus 312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e---------------~~~~~l~Ght~eVt~V~w~pS~~t~v 376 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE---------------APPALLLGHTREVTTVRWLPSATTPV 376 (720)
T ss_pred cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc---------------CChhhhhCcceEEEEEeeccccCCCc
Confidence 554321 1 233468999999999999999999997654 3345788999999999999974 568
Q ss_pred EEEeCCCeEEEEEcCCCeee
Q 008363 351 AYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 351 ~s~s~Dg~v~iwd~~~~~~~ 370 (568)
++|+.|..++||++..+-.+
T Consensus 377 ~TcSdD~~~kiW~l~~~l~e 396 (720)
T KOG0321|consen 377 ATCSDDFRVKIWRLSNGLEE 396 (720)
T ss_pred eeeccCcceEEEeccCchhh
Confidence 88899999999999665433
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1.4e-17 Score=152.96 Aligned_cols=166 Identities=20% Similarity=0.306 Sum_probs=135.0
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.+|.-+ |.++.|-|-.. +++.+++.|.+++|||..+.+....+
T Consensus 98 ~~Hky~-iss~~WyP~Dt---------GmFtssSFDhtlKVWDtnTlQ~a~~F--------------------------- 140 (397)
T KOG4283|consen 98 NGHKYA-ISSAIWYPIDT---------GMFTSSSFDHTLKVWDTNTLQEAVDF--------------------------- 140 (397)
T ss_pred ccceee-eeeeEEeeecC---------ceeecccccceEEEeecccceeeEEe---------------------------
Confidence 356664 44899999664 79999999999999999997666543
Q ss_pred CCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 176 GGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
...+.| ++-+|+|-.. ..+||+|..|-.|++.|+.++ .+-+++.+|...|.+|.|+|.. ..+||+|+
T Consensus 141 ~me~~V-YshamSp~a~sHcLiA~gtr~~~VrLCDi~SG------s~sH~LsGHr~~vlaV~Wsp~~-----e~vLatgs 208 (397)
T KOG4283|consen 141 KMEGKV-YSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG------SFSHTLSGHRDGVLAVEWSPSS-----EWVLATGS 208 (397)
T ss_pred ecCcee-ehhhcChhhhcceEEEEecCCCcEEEEeccCC------cceeeeccccCceEEEEeccCc-----eeEEEecC
Confidence 223445 6667775443 558889999999999999987 8889999999999999999997 47789999
Q ss_pred CCC-EEEEECCCCCcceeee--------------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 255 HGG-LKFWDIRDPFRPLWDI--------------HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~--------------~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
.|+ |++||+|....++..+ ..|.+.|+.++|..++.++++.+.|..+++|+..+..
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 999 9999999764344333 2577889999999999999999999999999986543
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.6e-17 Score=154.09 Aligned_cols=227 Identities=16% Similarity=0.242 Sum_probs=164.7
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
.++.|++.| .+||+|+.||.|.|||+.+...-+.+ .+|..+| .
T Consensus 27 ~~~~Fs~~G----------~~lAvGc~nG~vvI~D~~T~~iar~l--------------------------saH~~pi-~ 69 (405)
T KOG1273|consen 27 ECCQFSRWG----------DYLAVGCANGRVVIYDFDTFRIARML--------------------------SAHVRPI-T 69 (405)
T ss_pred ceEEeccCc----------ceeeeeccCCcEEEEEccccchhhhh--------------------------hccccce-e
Confidence 389999999 79999999999999999996654444 8899999 9
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-CEEEEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-GLKFWD 262 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~v~lwD 262 (568)
+++|+ ++|+.|+++|.|..|.+||+..+ .+++.+. ..++|+.+.|+|.. .+.++.+-.+ .-.+-+
T Consensus 70 sl~WS--~dgr~LltsS~D~si~lwDl~~g------s~l~rir-f~spv~~~q~hp~k-----~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 70 SLCWS--RDGRKLLTSSRDWSIKLWDLLKG------SPLKRIR-FDSPVWGAQWHPRK-----RNKCVATIMEESPVVID 135 (405)
T ss_pred EEEec--CCCCEeeeecCCceeEEEeccCC------CceeEEE-ccCccceeeecccc-----CCeEEEEEecCCcEEEE
Confidence 99999 99999999999999999999977 6777663 47899999999987 2444444333 344555
Q ss_pred CCCCCcceeeeCCC---CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCE
Q 008363 263 IRDPFRPLWDIHPA---PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAI 338 (568)
Q Consensus 263 ~~~~~~~~~~~~~h---~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V 338 (568)
+..+...+...... ...-.+..|.+.|++|++|...|.+.+||..++ +++..++-.. ..|
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----------------e~vas~rits~~~I 199 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----------------ECVASFRITSVQAI 199 (405)
T ss_pred ecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----------------eeeeeeeechheee
Confidence 55432222111110 111134468999999999999999999999542 3445665555 789
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCC---C------CcceeeeecccCCCCceEEcc
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSR---N------RPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~---~------~~~~~~~~s~~~~~~~i~~~~ 397 (568)
..+.|+..|.+|+.-+.|..|+.|++...-.. ++... + ....+.|..++.+|.++.-++
T Consensus 200 K~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 200 KQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred eEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEecc
Confidence 99999999999999999999999998632222 11000 0 112344556777877766554
No 132
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.4e-19 Score=188.82 Aligned_cols=215 Identities=18% Similarity=0.364 Sum_probs=165.2
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.+.++|.+.+. ...++||.|..||.|.+||.... ... ..+.....|++
T Consensus 67 F~kL~W~~~g~------~~~GlIaGG~edG~I~ly~p~~~~~~~~~-----------------------~~la~~~~h~G 117 (1049)
T KOG0307|consen 67 FNKLAWGSYGS------HSHGLIAGGLEDGNIVLYDPASIIANASE-----------------------EVLATKSKHTG 117 (1049)
T ss_pred ceeeeecccCC------CccceeeccccCCceEEecchhhccCcch-----------------------HHHhhhcccCC
Confidence 34899999884 22258999999999999998762 111 11223378999
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
.| ..|+|++. .+++||+|+.||.|.|||+..... +... -..-.+.|.+|+|+..-+ ++||+++.++
T Consensus 118 ~V-~gLDfN~~-q~nlLASGa~~geI~iWDlnn~~t-----P~~~~~~~~~~eI~~lsWNrkvq-----hILAS~s~sg~ 185 (1049)
T KOG0307|consen 118 PV-LGLDFNPF-QGNLLASGADDGEILIWDLNKPET-----PFTPGSQAPPSEIKCLSWNRKVS-----HILASGSPSGR 185 (1049)
T ss_pred ce-eeeecccc-CCceeeccCCCCcEEEeccCCcCC-----CCCCCCCCCcccceEeccchhhh-----HHhhccCCCCC
Confidence 99 99999955 345999999999999999985421 1111 112356799999999874 8999999998
Q ss_pred EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCC-EEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 258 LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPG-CVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~-~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+.|||+|.. +++..+..+.+ .+..|.|+|+.. .|++++.| -.|.+||+|... .++.++
T Consensus 186 ~~iWDlr~~-~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---------------sP~k~~ 249 (1049)
T KOG0307|consen 186 AVIWDLRKK-KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---------------SPLKIL 249 (1049)
T ss_pred ceeccccCC-CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---------------Cchhhh
Confidence 999999987 77766665544 468999999864 34445443 359999998755 445788
Q ss_pred ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363 332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
.+|...|.+|.|++.+ .+|++++.|+.|.+|+.+++++..+..
T Consensus 250 ~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p 293 (1049)
T KOG0307|consen 250 EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP 293 (1049)
T ss_pred cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence 9999999999999987 999999999999999999987765433
No 133
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=156.72 Aligned_cols=172 Identities=15% Similarity=0.179 Sum_probs=131.8
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE------------------------------
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL------------------------------ 223 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~------------------------------ 223 (568)
+.+|...| ++++|+ .+|..|++++.|++|+||+++.-... ..++++
T Consensus 82 LKgH~~~v-t~~~Fs--SdGK~lat~~~Dr~Ir~w~~~DF~~~-eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 82 LKGHKKEV-TDVAFS--SDGKKLATISGDRSIRLWDVRDFENK-EHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhccCCce-eeeEEc--CCCceeEEEeCCceEEEEecchhhhh-hhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 48999999 999999 99999999999999999998743210 000000
Q ss_pred -E-----------------------eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC
Q 008363 224 -C-----------------------FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK 278 (568)
Q Consensus 224 -~-----------------------~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~ 278 (568)
. .+.|...|.++-....+ .+|+|++.|+ |.|||++ + +.+..+.....
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~------k~imsas~dt~i~lw~lk-G-q~L~~idtnq~ 229 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA------KYIMSASLDTKICLWDLK-G-QLLQSIDTNQS 229 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc------eEEEEecCCCcEEEEecC-C-ceeeeeccccc
Confidence 0 01123334444444444 8999999999 9999999 4 77777776666
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
.-+..+.||+|++|++++.--.|++|.+-... .|.. .+...+..+.||...|..++|+++...++|.|.||+
T Consensus 230 ~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-----dG~f---qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~ 301 (420)
T KOG2096|consen 230 SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-----DGTF---QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK 301 (420)
T ss_pred cccceeeCCCCcEEEEecCCCCceEEEEEecc-----Ccch---hhhhhhheeccchhheeeeeeCCCcceeEEEecCCc
Confidence 67889999999999999998899999974322 2322 112345688999999999999999999999999999
Q ss_pred EEEEEcC
Q 008363 359 VHRFQLT 365 (568)
Q Consensus 359 v~iwd~~ 365 (568)
++|||.+
T Consensus 302 wriwdtd 308 (420)
T KOG2096|consen 302 WRIWDTD 308 (420)
T ss_pred EEEeecc
Confidence 9999984
No 134
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=6.6e-19 Score=188.17 Aligned_cols=254 Identities=18% Similarity=0.281 Sum_probs=189.3
Q ss_pred CCceeeccCCccce----eecccCcc-cCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEE
Q 008363 51 ANHQIYHGSERDSA----VCDVLGDF-LSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL 125 (568)
Q Consensus 51 ~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l 125 (568)
..|+...|...... ++.+.++= ....+. ..+-.....+.+..+..|+|.| ..+.|++..+ ++|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p--~~~~~~~~~~~la~~~~h~G~V-~gLDfN~~q~---------nlL 132 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDP--ASIIANASEEVLATKSKHTGPV-LGLDFNPFQG---------NLL 132 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecc--hhhccCcchHHHhhhcccCCce-eeeeccccCC---------cee
Confidence 44556667655444 34444321 111111 1222345667777888999955 4999999986 699
Q ss_pred EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeE
Q 008363 126 AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTV 205 (568)
Q Consensus 126 as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I 205 (568)
|+|+.||.|.|||+...+.-..+. ...-...| .+|+|+-. ....|++|+.+|.+
T Consensus 133 ASGa~~geI~iWDlnn~~tP~~~~------------------------~~~~~~eI-~~lsWNrk-vqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 133 ASGADDGEILIWDLNKPETPFTPG------------------------SQAPPSEI-KCLSWNRK-VSHILASGSPSGRA 186 (1049)
T ss_pred eccCCCCcEEEeccCCcCCCCCCC------------------------CCCCcccc-eEeccchh-hhHHhhccCCCCCc
Confidence 999999999999998844332210 03345677 99999832 23478999999999
Q ss_pred EEEEccCCCCCCCCceeEEeeCCCC--CeeEEEEccCCCCCCCCcEEEEEcCC-C---EEEEECCCCCcceeeeCCCCCC
Q 008363 206 ALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVILTAGHG-G---LKFWDIRDPFRPLWDIHPAPKF 279 (568)
Q Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~~~~las~s~d-~---v~lwD~~~~~~~~~~~~~h~~~ 279 (568)
.|||++.. +++..+..|.+ .+..|+|+|+.. ..|+++++| + |.+||+|....++.++.+|...
T Consensus 187 ~iWDlr~~------~pii~ls~~~~~~~~S~l~WhP~~a-----Tql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 187 VIWDLRKK------KPIIKLSDTPGRMHCSVLAWHPDHA-----TQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred eeccccCC------CcccccccCCCccceeeeeeCCCCc-----eeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 99999976 55655554444 478999999983 566666554 3 9999999988999999999999
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCC
Q 008363 280 IYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADG 357 (568)
Q Consensus 280 i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg 357 (568)
|.+|.|++.+ ++|++++.|+.|.+|+.. +|+.+ ..+......+..+.|+|.. .+++.++.||
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~--------tgEvl--------~~~p~~~nW~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPN--------TGEVL--------GELPAQGNWCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCC--------CceEe--------eecCCCCcceeeeeecCCCcchhhhheecc
Confidence 9999999966 888899999999999994 56554 5666677889999999986 5899999999
Q ss_pred eEEEEEcCCCee
Q 008363 358 TVHRFQLTAKAV 369 (568)
Q Consensus 358 ~v~iwd~~~~~~ 369 (568)
.|-|+.+.+...
T Consensus 320 kI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 320 KISIYSLQGTDT 331 (1049)
T ss_pred ceeeeeeecCCc
Confidence 999999976653
No 135
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=4.8e-17 Score=151.06 Aligned_cols=203 Identities=17% Similarity=0.193 Sum_probs=156.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363 124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG 203 (568)
Q Consensus 124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg 203 (568)
.|++|+....|.=+++.-.. ..........+.|.+.+ ..|.++| ++|+.+ +.++|+|+.|-
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~----------~~~~~s~~~~l~~lF~~----~aH~~si-tavAVs----~~~~aSGssDe 63 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP----------KGCTDSVKPTLKPLFAF----SAHAGSI-TALAVS----GPYVASGSSDE 63 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc----------cccccccceeeeccccc----cccccce-eEEEec----ceeEeccCCCC
Confidence 36678877777766665421 01122233345555544 8999999 999965 88999999999
Q ss_pred eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEE
Q 008363 204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYG 282 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~ 282 (568)
+|+|||+... ..+..+-.|.+.|+++.|.+.- +-..|++|++|| |.+||.... ..+..+.+|.+.|+.
T Consensus 64 tI~IYDm~k~------~qlg~ll~HagsitaL~F~~~~----S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 64 TIHIYDMRKR------KQLGILLSHAGSITALKFYPPL----SKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTD 132 (362)
T ss_pred cEEEEeccch------hhhcceeccccceEEEEecCCc----chhheeeecCCCcEEEEEcCCe-EEeeeecccccccce
Confidence 9999999976 6777888999999999999986 223899999999 999999988 889999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 283 LDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 283 l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
|+.+|.++.-++.+.|+.+++|++ +.|+.- ..+. -...-+.|.|+|.|.+++.++.+ .|-||
T Consensus 133 lsiHPS~KLALsVg~D~~lr~WNL--------V~Gr~a--------~v~~-L~~~at~v~w~~~Gd~F~v~~~~-~i~i~ 194 (362)
T KOG0294|consen 133 LSIHPSGKLALSVGGDQVLRTWNL--------VRGRVA--------FVLN-LKNKATLVSWSPQGDHFVVSGRN-KIDIY 194 (362)
T ss_pred eEecCCCceEEEEcCCceeeeehh--------hcCccc--------eeec-cCCcceeeEEcCCCCEEEEEecc-EEEEE
Confidence 999999999999999999999999 445432 1111 11222348999999888877755 68899
Q ss_pred EcCCCeeeccCC
Q 008363 363 QLTAKAVEKDHS 374 (568)
Q Consensus 363 d~~~~~~~~~~~ 374 (568)
.+.+..+..+..
T Consensus 195 q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 195 QLDNASVFREIE 206 (362)
T ss_pred ecccHhHhhhhh
Confidence 998776665533
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.77 E-value=3.4e-17 Score=166.15 Aligned_cols=236 Identities=13% Similarity=0.182 Sum_probs=180.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC----CceeeEEeccCC------------------------
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL----LRTMKAIYLSSM------------------------ 153 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~----~~~~~~l~~~~~------------------------ 153 (568)
+| ++.|.|.. ..|.....|.+|+|||+.. +++...++...-
T Consensus 327 ~I-A~~Fdet~----------~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 327 AI-ACQFDETT----------DKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred ee-EEEecCCC----------ceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccce
Confidence 56 88899888 6888888999999999887 444444432211
Q ss_pred ccCCCCceEEEeecceeccc---------------------------------------ccCCcCccceEEEEccCCCCC
Q 008363 154 KEGTDPRFVKLEPVFRCSML---------------------------------------KCGGTQSIPLTMEWSTSPPHD 194 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~~~~~---------------------------------------~~~h~~~V~~~v~~s~~~~g~ 194 (568)
..++.|.+|++|+...|... ..+....+ .+|+.+ |+|+
T Consensus 396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~-R~~~vS--p~gq 472 (1080)
T KOG1408|consen 396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGF-RALAVS--PDGQ 472 (1080)
T ss_pred eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccce-EEEEEC--CCcc
Confidence 45788889999987653210 11122345 688877 9999
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee
Q 008363 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI 273 (568)
Q Consensus 195 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~ 273 (568)
+||+|..-|+|+||++..- .....+.+|...|.|+.|+... -..++||+++.|. |+++|+...+.++.++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l------~~~~~~eAHesEilcLeyS~p~---~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQEL------EYTCFMEAHESEILCLEYSFPV---LTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred eecccCccCceEEEEehhh------hhhhheecccceeEEEeecCch---hhhHhhhhccCCceEEEEecccccchhhhh
Confidence 9999999999999999855 6677888999999999998643 1237899999999 9999999887777888
Q ss_pred CCCCCCeEEEEEcCCC-------------------------------------------------CEEEEEeCCCcEEEE
Q 008363 274 HPAPKFIYGLDWLPDP-------------------------------------------------GCVILSFDDGAMRIV 304 (568)
Q Consensus 274 ~~h~~~i~~l~~sp~~-------------------------------------------------~~l~s~~~dg~I~lw 304 (568)
.+|...|+++.|--.| .++++++.|..|+||
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 7887777777765433 788899999999999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 373 (568)
|+.+ |+.. +.+..-.+|.+....+...|.|.||++.+.|.++.++|+.+++.....
T Consensus 624 ~i~s--------gKq~-----k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 624 DIES--------GKQV-----KSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred eccc--------ccee-----eeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 9954 6554 112222356778888999999999999999999999999988766543
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=6.6e-17 Score=157.03 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=198.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCC---------------ccCCCCceEEE
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSM---------------KEGTDPRFVKL 164 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~---------------~~~~~~~~v~~ 164 (568)
.|.+|.|+|.. .+|++|+.||+++||.+.. ...++.+.-... ..++...++..
T Consensus 215 ~I~sv~FHp~~----------plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 215 GITSVQFHPTA----------PLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CceEEEecCCC----------ceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEE
Confidence 45699999999 6999999999999999876 333443322211 34566677788
Q ss_pred eeccee----cccccCCcC-ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 165 EPVFRC----SMLKCGGTQ-SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 165 ~~~~~~----~~~~~~h~~-~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
|++.+- .....|+.. .+ .....+ +++.+|+..+..|.|.|....++ ..+..++ -.+.|..++|+.
T Consensus 285 yDle~ak~~k~~~~~g~e~~~~-e~FeVS--hd~~fia~~G~~G~I~lLhakT~------eli~s~K-ieG~v~~~~fsS 354 (514)
T KOG2055|consen 285 YDLETAKVTKLKPPYGVEEKSM-ERFEVS--HDSNFIAIAGNNGHIHLLHAKTK------ELITSFK-IEGVVSDFTFSS 354 (514)
T ss_pred eeccccccccccCCCCcccchh-heeEec--CCCCeEEEcccCceEEeehhhhh------hhhheee-eccEEeeEEEec
Confidence 887662 222334442 23 445545 88999999999999999998877 6666664 367799999999
Q ss_pred CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC-eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 240 AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF-IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~-i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
++ ..|+.++.+| |.+||++.. .++..+....+- -+++|.++++.+|++|+..|.|.|||..+.-
T Consensus 355 ds------k~l~~~~~~GeV~v~nl~~~-~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~------- 420 (514)
T KOG2055|consen 355 DS------KELLASGGTGEVYVWNLRQN-SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF------- 420 (514)
T ss_pred CC------cEEEEEcCCceEEEEecCCc-ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh-------
Confidence 88 6666666666 999999988 777777543221 2788999999999999999999999974422
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEEcCCCeeecc-C-CCCCcceeeeecccCCCCce
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRFQLTAKAVEKD-H-SRNRPMHFLCGSVTEDESAI 393 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iwd~~~~~~~~~-~-~~~~~~~~~~~s~~~~~~~i 393 (568)
..+..+++..+..-...|++|+|++++.+||.+| .+..+++-.+.+..+-.. + ...++.+..|..+++.++.+
T Consensus 421 ---~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~l 497 (514)
T KOG2055|consen 421 ---ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYL 497 (514)
T ss_pred ---ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceE
Confidence 2333366678887888999999999999988887 467889888876655432 2 24466788999999999999
Q ss_pred EEcccCCCCCc
Q 008363 394 TVNTPLDNTPV 404 (568)
Q Consensus 394 ~~~~~~~~~~~ 404 (568)
+++.....+++
T Consensus 498 AvGNe~grv~l 508 (514)
T KOG2055|consen 498 AVGNEAGRVHL 508 (514)
T ss_pred EeecCCCceee
Confidence 99877666654
No 138
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.3e-16 Score=161.92 Aligned_cols=240 Identities=14% Similarity=0.183 Sum_probs=178.8
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--ee-----eEEeccCC--------------
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TM-----KAIYLSSM-------------- 153 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~-----~~l~~~~~-------------- 153 (568)
..||++ .|+++.|+|.+ ..|++++.|.++.||.-.+.. -+ ..+.+...
T Consensus 263 l~GHeD-WV~sv~W~p~~----------~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~i 331 (764)
T KOG1063|consen 263 LMGHED-WVYSVWWHPEG----------LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVI 331 (764)
T ss_pred hcCccc-ceEEEEEccch----------hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEE
Confidence 359999 99999999999 689999999999999876631 11 11111110
Q ss_pred ccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-------------
Q 008363 154 KEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS------------- 215 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~------------- 215 (568)
+.-+..+-+++|.... ......||.+.| ..|+|. |.|.+|++.+.|.|-||+-.-..+.
T Consensus 332 i~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V-~dv~W~--psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 332 IAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV-KDVDWD--PSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred EEecccCcEEEEeccCccceeeccccccccccc-eeeeec--CCCCEEEEeccccceeeecccccccceeeecccccccc
Confidence 2223444456666211 234557999999 999999 8899999999999988864321000
Q ss_pred --------------------------------------------------------------CC--------C-------
Q 008363 216 --------------------------------------------------------------SI--------D------- 218 (568)
Q Consensus 216 --------------------------------------------------------------~~--------~------- 218 (568)
+. .
T Consensus 409 Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~ 488 (764)
T KOG1063|consen 409 DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVC 488 (764)
T ss_pred cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccccccccee
Confidence 00 0
Q ss_pred --------------------------CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCC
Q 008363 219 --------------------------SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDIRDP 266 (568)
Q Consensus 219 --------------------------~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~ 266 (568)
...++.+.||...|++++.+|++ +++||+... . |+||+..+.
T Consensus 489 ~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~g------nliASaCKS~~~ehAvI~lw~t~~W 562 (764)
T KOG1063|consen 489 AETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTG------NLIASACKSSLKEHAVIRLWNTANW 562 (764)
T ss_pred eecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCC------CEEeehhhhCCccceEEEEEeccch
Confidence 00112344788899999999999 999998652 3 999999987
Q ss_pred CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363 267 FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346 (568)
Q Consensus 267 ~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~ 346 (568)
..+..+.+|.-.|+.|+||||+++|++.+.|+++.||....... +. -.+...+.|+.-||+..|+|+
T Consensus 563 -~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~-----~e-------~~fa~~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 563 -LQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK-----DE-------FRFACLKAHTRIIWDCSWSPD 629 (764)
T ss_pred -hhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc-----hh-------hhhccccccceEEEEcccCcc
Confidence 66678899999999999999999999999999999999843210 10 112346789999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCC
Q 008363 347 TGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 347 ~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+.+++|+|.|.+|++|.....
T Consensus 630 e~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 630 EKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cceeEEecCCceEEEEeccCc
Confidence 999999999999999998654
No 139
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.77 E-value=4.4e-17 Score=150.45 Aligned_cols=244 Identities=16% Similarity=0.205 Sum_probs=166.2
Q ss_pred CCCCCCCCCceeeccCCc-ccee-ecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCc
Q 008363 44 EDEEPPTANHQIYHGSER-DSAV-CDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQR 121 (568)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~ 121 (568)
++..||.........+.. ...+ |...|+-..+....-. ....| .....|.+.+. +++|+.+|
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~----g~~~~--ka~~~~~~PvL-~v~Wsddg--------- 84 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS----GQLVP--KAQQSHDGPVL-DVCWSDDG--------- 84 (347)
T ss_pred ecCCCcccchheeEeccccCceEEecccCCceEEEEEecC----Ccccc--hhhhccCCCeE-EEEEccCC---------
Confidence 344455555555444442 2222 4445555444432111 01112 12357888454 99999999
Q ss_pred ccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363 122 LGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 122 ~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
..+++|+.|+.+++||+.+++.... ..|.+.| .++.|-+......|++||.
T Consensus 85 -skVf~g~~Dk~~k~wDL~S~Q~~~v---------------------------~~Hd~pv-kt~~wv~~~~~~cl~TGSW 135 (347)
T KOG0647|consen 85 -SKVFSGGCDKQAKLWDLASGQVSQV---------------------------AAHDAPV-KTCHWVPGMNYQCLVTGSW 135 (347)
T ss_pred -ceEEeeccCCceEEEEccCCCeeee---------------------------eecccce-eEEEEecCCCcceeEeccc
Confidence 7999999999999999999866544 7899999 9999985555568999999
Q ss_pred CCeEEEEEccCCCCCCC----------------------Ccee---------EEeeCCC----CCeeEEEEccCCCCCCC
Q 008363 202 DGTVALWKFVASDSSID----------------------SRPL---------LCFSADT----LPIRAVSWAPAESDSDS 246 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~----------------------~~~~---------~~~~~h~----~~V~~v~~~p~~~~~~~ 246 (568)
|.+|+.||++...+... .+-+ ..++.+. -.++||+..++.
T Consensus 136 DKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~----- 210 (347)
T KOG0647|consen 136 DKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK----- 210 (347)
T ss_pred ccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-----
Confidence 99999999986643100 0000 1111122 247888888887
Q ss_pred CcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCC---------CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 247 ANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPK---------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~---------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
..+|.|+-.| +.+..+..+. ..-++|..|.. .|++|+|+|....|++.|.||++.+||-...
T Consensus 211 -~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar------ 283 (347)
T KOG0647|consen 211 -DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR------ 283 (347)
T ss_pred -CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh------
Confidence 5668888877 7777776542 22244555542 4689999999999999999999999997431
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s 354 (568)
..|.....|..+|++.+|+.+|.++|.+.
T Consensus 284 ----------~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 284 ----------TKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ----------hhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 23456778999999999999998887764
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.77 E-value=2.7e-17 Score=165.47 Aligned_cols=238 Identities=15% Similarity=0.238 Sum_probs=163.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
++||.+..||.|.++|....... + ...-+.....|...| +.+.|. |....|++++.|
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr--~------------------ee~~lk~~~aH~nAi-fDl~wa--pge~~lVsasGD 121 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFR--L------------------EERQLKKPLAHKNAI-FDLKWA--PGESLLVSASGD 121 (720)
T ss_pred ceEEEecCCCceeeecchhhhcc--h------------------hhhhhccccccccee-EeeccC--CCceeEEEccCC
Confidence 79999999999999998873222 0 000012226799999 999999 555689999999
Q ss_pred CeEEEEEccCCCCCCCCceeE--EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-----------
Q 008363 203 GTVALWKFVASDSSIDSRPLL--CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR----------- 268 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~--~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~----------- 268 (568)
.++++||+.+. .+.. .+.+|.+.|.+++|.|.. +.+|++|+.|+ |.|||++....
T Consensus 122 sT~r~Wdvk~s------~l~G~~~~~GH~~SvkS~cf~~~n-----~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~ 190 (720)
T KOG0321|consen 122 STIRPWDVKTS------RLVGGRLNLGHTGSVKSECFMPTN-----PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIY 190 (720)
T ss_pred ceeeeeeeccc------eeecceeecccccccchhhhccCC-----CcceeeccCCCcEEEEEEeccchhhHHHHhhhhh
Confidence 99999999977 4444 488999999999999997 59999999999 99999986530
Q ss_pred --------ce-------eeeCCCCCCeEE---EEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 269 --------PL-------WDIHPAPKFIYG---LDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 269 --------~~-------~~~~~h~~~i~~---l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+. .....+...|.+ +.+..|...|+++|. |+.|+|||+|+..-. ..+++. ...
T Consensus 191 ~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~--~r~ep~------~~~ 262 (720)
T KOG0321|consen 191 GRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA--YRQEPR------GSD 262 (720)
T ss_pred ccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc--cccCCC------ccc
Confidence 00 011134444554 556678888999877 999999999875421 111111 112
Q ss_pred EEecC---CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec--cCCCCC-cceeeeecccCCCCceEEcccCCCC
Q 008363 330 LVNCS---SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK--DHSRNR-PMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 330 ~~~~h---~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~--~~~~~~-~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
.+..| ...+.++.....|.+|++.+.|+.|++|++.+....- ...... ...+.-..+++++..+..++.....
T Consensus 263 ~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~a 341 (720)
T KOG0321|consen 263 KYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQA 341 (720)
T ss_pred CccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcce
Confidence 22333 3457778887778888888889999999997543321 112222 2233344667788777776554443
No 141
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.76 E-value=2.6e-17 Score=151.07 Aligned_cols=221 Identities=12% Similarity=0.201 Sum_probs=162.1
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
..|.-.+ ..+-|.|+..+ .+..+||+++ ..+|||.+...+....+ ..... .....
T Consensus 93 fd~~YP~-tK~~wiPd~~g-----~~pdlLATs~--D~LRlWri~~ee~~~~~----------------~~~L~-~~kns 147 (364)
T KOG0290|consen 93 FDHPYPV-TKLMWIPDSKG-----VYPDLLATSS--DFLRLWRIGDEESRVEL----------------QSVLN-NNKNS 147 (364)
T ss_pred CCCCCCc-cceEecCCccc-----cCcchhhccc--CeEEEEeccCcCCceeh----------------hhhhc-cCccc
Confidence 4677744 49999998621 2336788765 47999999852111000 00000 00124
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
.+..++ ++++|+-. +-++|.+.+-|.+..|||+.++.. +.....+-+|...|++|+|...+ ..+|||.|.
T Consensus 148 ~~~aPl-TSFDWne~-dp~~igtSSiDTTCTiWdie~~~~---~~vkTQLIAHDKEV~DIaf~~~s-----~~~FASvga 217 (364)
T KOG0290|consen 148 EFCAPL-TSFDWNEV-DPNLIGTSSIDTTCTIWDIETGVS---GTVKTQLIAHDKEVYDIAFLKGS-----RDVFASVGA 217 (364)
T ss_pred ccCCcc-cccccccC-CcceeEeecccCeEEEEEEeeccc---cceeeEEEecCcceeEEEeccCc-----cceEEEecC
Confidence 566788 99999865 457999999999999999997611 23455677999999999999965 489999999
Q ss_pred CC-EEEEECCCCCcceeeeC-CC-CCCeEEEEEcCC-CCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 256 GG-LKFWDIRDPFRPLWDIH-PA-PKFIYGLDWLPD-PGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~-~h-~~~i~~l~~sp~-~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
|| ||+||+|........+. +. ..+...++|++. .+++++-.. ...|.+.|+|... .++..
T Consensus 218 DGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~---------------tpva~ 282 (364)
T KOG0290|consen 218 DGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC---------------TPVAR 282 (364)
T ss_pred CCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------------cceeh
Confidence 99 99999998753333333 22 456789999984 566666544 5679999998744 44578
Q ss_pred EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
+.+|.+.|+.++|.|.. ..|+||+.|..+.|||+..
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 99999999999999985 8999999999999999964
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.9e-16 Score=159.22 Aligned_cols=236 Identities=17% Similarity=0.246 Sum_probs=176.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
.|.+++|+.+. +.||++-.||.|.||++...-+.. .+. .+-...
T Consensus 27 ~I~slA~s~kS----------~~lAvsRt~g~IEiwN~~~~w~~~~vi~-------------------------g~~drs 71 (691)
T KOG2048|consen 27 EIVSLAYSHKS----------NQLAVSRTDGNIEIWNLSNNWFLEPVIH-------------------------GPEDRS 71 (691)
T ss_pred ceEEEEEeccC----------CceeeeccCCcEEEEccCCCceeeEEEe-------------------------cCCCCc
Confidence 34499999998 789999999999999999844332 221 122345
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
| -+++|+ ++..|.+.+.+|+|.-||+.+. ++...+....+.|++++.+|.+ ..++.|++|| +.
T Consensus 72 I-E~L~W~---e~~RLFS~g~sg~i~EwDl~~l------k~~~~~d~~gg~IWsiai~p~~------~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 72 I-ESLAWA---EGGRLFSSGLSGSITEWDLHTL------KQKYNIDSNGGAIWSIAINPEN------TILAIGCDDGVLY 135 (691)
T ss_pred e-eeEEEc---cCCeEEeecCCceEEEEecccC------ceeEEecCCCcceeEEEeCCcc------ceEEeecCCceEE
Confidence 6 889999 5568999999999999999976 8888888889999999999998 8999999999 77
Q ss_pred EEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363 260 FWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA 337 (568)
Q Consensus 260 lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~ 337 (568)
+++........ ..+....+.|.++.|+|++..|++|+.||.|++||... |..+. .-...+..+. +-..-
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~--------~~t~~-~~~~~~d~l~k~~~~i 206 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS--------GQTLH-IITMQLDRLSKREPTI 206 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC--------CceEE-EeeecccccccCCceE
Confidence 77776553222 34445568899999999999999999999999999954 32220 0000000111 13346
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
||+|.|-.+ ..|++|..-|+|.+||...+.+.+.. ..-..+.+|-+.+.+++.+.+....
T Consensus 207 VWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 207 VWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVD 266 (691)
T ss_pred EEEEEEeec-CcEEEecCCceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCC
Confidence 889988854 57999999999999999988877653 3334567777778877777664433
No 143
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=1.6e-17 Score=154.92 Aligned_cols=214 Identities=15% Similarity=0.201 Sum_probs=159.3
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.+.+. .++|+|..+ ++|++++.|.+|++|++++..|+..+-+.
T Consensus 131 ~~ghG~sIN-eik~~p~~~---------qlvls~SkD~svRlwnI~~~~Cv~VfGG~----------------------- 177 (385)
T KOG1034|consen 131 YRGHGGSIN-EIKFHPDRP---------QLVLSASKDHSVRLWNIQTDVCVAVFGGV----------------------- 177 (385)
T ss_pred eeccCccch-hhhcCCCCC---------cEEEEecCCceEEEEeccCCeEEEEeccc-----------------------
Confidence 568888444 999999987 89999999999999999999999887554
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc-------------------ee---EEeeCCCCCe
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR-------------------PL---LCFSADTLPI 232 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-------------------~~---~~~~~h~~~V 232 (568)
.||...| ++++|+ .+|++|++++.|.+|++|++.........+ .+ .+-.-|...|
T Consensus 178 egHrdeV-LSvD~~--~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 178 EGHRDEV-LSVDFS--LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccCcE-EEEEEc--CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 7999999 999999 889999999999999999998432210000 01 1223477788
Q ss_pred eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-------------ceeeeCCCCCCeE--EEEEcCCCCEEEEEe
Q 008363 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-------------PLWDIHPAPKFIY--GLDWLPDPGCVILSF 296 (568)
Q Consensus 233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-------------~~~~~~~h~~~i~--~l~~sp~~~~l~s~~ 296 (568)
.|+.|-- ++++|-|.++ |.+|....-.. .+..+.-....|. ..+|.|-++.|+.|.
T Consensus 255 DCvrw~g--------d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 255 DCVRWFG--------DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred HHHHHHh--------hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc
Confidence 8888764 4888888887 99998721111 1122322334454 456678889999999
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
..|.|++||+++.... .. .-.+.......|...+|+.++.+|+..+.|++|.-||.
T Consensus 327 q~g~v~vwdL~~~ep~-----~~-------ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPP-----KC-------TTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred CCCcEEEEECCCCCCc-----cC-------ceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 9999999999764411 00 01122223467999999999999999999999999986
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.2e-17 Score=152.98 Aligned_cols=198 Identities=16% Similarity=0.239 Sum_probs=153.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..+|++...|+|+|||..+++.+..+ .+|...+ ..+.|.-......+.+|+.|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~f--------------------------k~~~~~~-N~vrf~~~ds~h~v~s~ssD 93 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEF--------------------------KGPPATT-NGVRFISCDSPHGVISCSSD 93 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhee--------------------------cCCCCcc-cceEEecCCCCCeeEEeccC
Confidence 57899999999999999999988887 5555555 66676632245689999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcC----CC-EEEEECCCCCcceee-eCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGH----GG-LKFWDIRDPFRPLWD-IHP 275 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~----d~-v~lwD~~~~~~~~~~-~~~ 275 (568)
|+|++||++.... .....+.+|. .+..+++.+-.+ +++++|.. +. |.+||+|...+++.. ...
T Consensus 94 G~Vr~wD~Rs~~e----~a~~~~~~~~~~~f~~ld~nck~------~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eS 163 (376)
T KOG1188|consen 94 GTVRLWDIRSQAE----SARISWTQQSGTPFICLDLNCKK------NIIACGTELTRSDASVVLWDVRSEQQLLRQLNES 163 (376)
T ss_pred CeEEEEEeecchh----hhheeccCCCCCcceEeeccCcC------CeEEeccccccCceEEEEEEeccccchhhhhhhh
Confidence 9999999997633 5555666666 466777766565 78888865 45 999999988665644 458
Q ss_pred CCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEE
Q 008363 276 APKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYC 353 (568)
Q Consensus 276 h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~ 353 (568)
|.+.|++|+|+|. ...|++|+.||.|.|||+.....+ ..|...-.|...|.++.|...+ +.|.+-
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-------------DaL~~viN~~sSI~~igw~~~~ykrI~cl 230 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-------------DALLHVINHGSSIHLIGWLSKKYKRIMCL 230 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------------hhHHHhhcccceeeeeeeecCCcceEEEE
Confidence 9999999999994 577888899999999999643211 2333444578889999999887 679999
Q ss_pred eCCCeEEEEEcCCCeee
Q 008363 354 SADGTVHRFQLTAKAVE 370 (568)
Q Consensus 354 s~Dg~v~iwd~~~~~~~ 370 (568)
+.+++..+|+++.+..+
T Consensus 231 TH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 231 THMETFAIYELEDGSEE 247 (376)
T ss_pred EccCceeEEEccCCChh
Confidence 99999999999877633
No 145
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=2.2e-17 Score=164.23 Aligned_cols=225 Identities=15% Similarity=0.241 Sum_probs=172.5
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
....|.. +++++.|.|.. ..|++++.||.|.+|+++.... .....+.|+.++
T Consensus 289 tl~s~~d-~ir~l~~~~se----------p~lit~sed~~lk~WnLqk~~~--------------s~~~~~epi~tf--- 340 (577)
T KOG0642|consen 289 TLRSHDD-CIRALAFHPSE----------PVLITASEDGTLKLWNLQKAKK--------------SAEKDVEPILTF--- 340 (577)
T ss_pred eeecchh-hhhhhhcCCCC----------CeEEEeccccchhhhhhcccCC--------------ccccceeeeEEE---
Confidence 4567777 78899999998 5899999999999999944110 011123444444
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC----CCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI----DSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~----~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.+|.++| .|++.. +++.++++|+.||+|+.|++......- ......++.||++.|+.+++++.. ..
T Consensus 341 -raH~gPV-l~v~v~--~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~------~~ 410 (577)
T KOG0642|consen 341 -RAHEGPV-LCVVVP--SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK------DR 410 (577)
T ss_pred -ecccCce-EEEEec--CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc------cc
Confidence 8999999 999988 889999999999999999775221111 113445788999999999999997 78
Q ss_pred EEEEcCCC-EEEEECCCCCcceee-------------------------------------------eC--C-----CCC
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWD-------------------------------------------IH--P-----APK 278 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~-------------------------------------------~~--~-----h~~ 278 (568)
|++++.|+ |++|+......++.. +. . -..
T Consensus 411 Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 99999999 999987644211000 00 0 113
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
.++.+.++|.+.+.+++..|+.|+++|.. +|+++ +....|...|+++++.|+|.+|++++.|+.
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~--------~~~~l--------~s~~a~~~svtslai~~ng~~l~s~s~d~s 554 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNK--------TGKIL--------HSMVAHKDSVTSLAIDPNGPYLMSGSHDGS 554 (577)
T ss_pred ccceEEecCCCCeeEecccCCceeccccc--------ccccc--------hheeeccceecceeecCCCceEEeecCCce
Confidence 46678889999999999999999999984 56554 677889999999999999999999999999
Q ss_pred EEEEEcCCCeeecc
Q 008363 359 VHRFQLTAKAVEKD 372 (568)
Q Consensus 359 v~iwd~~~~~~~~~ 372 (568)
+++|.+.......+
T Consensus 555 v~l~kld~k~~~~e 568 (577)
T KOG0642|consen 555 VRLWKLDVKTCVLE 568 (577)
T ss_pred eehhhccchheeec
Confidence 99999965544433
No 146
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=168.39 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=163.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+.+|+.++.| ++.+.|+..|+|-+|++++|-....+... ..|...|
T Consensus 450 ~~~av~vs~CG----------NF~~IG~S~G~Id~fNmQSGi~r~sf~~~-----------------------~ah~~~V 496 (910)
T KOG1539|consen 450 NATAVCVSFCG----------NFVFIGYSKGTIDRFNMQSGIHRKSFGDS-----------------------PAHKGEV 496 (910)
T ss_pred ceEEEEEeccC----------ceEEEeccCCeEEEEEcccCeeecccccC-----------------------ccccCce
Confidence 45589999999 89999999999999999997766554211 5788898
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
+.|+.. .-++.+++++.+|.++.||+... .++..+. -...+.++..+... .++|.+.+|- |++
T Consensus 497 -~gla~D--~~n~~~vsa~~~Gilkfw~f~~k------~l~~~l~-l~~~~~~iv~hr~s------~l~a~~~ddf~I~v 560 (910)
T KOG1539|consen 497 -TGLAVD--GTNRLLVSAGADGILKFWDFKKK------VLKKSLR-LGSSITGIVYHRVS------DLLAIALDDFSIRV 560 (910)
T ss_pred -eEEEec--CCCceEEEccCcceEEEEecCCc------ceeeeec-cCCCcceeeeeehh------hhhhhhcCceeEEE
Confidence 888866 56778999999999999999966 4555553 24567888888877 7899999987 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
+|+.+. +.++.+.+|...|++++|||||++|++++.|++|++||+. +|.++ ..-.-..+.++
T Consensus 561 vD~~t~-kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlp--------t~~lI---------D~~~vd~~~~s 622 (910)
T KOG1539|consen 561 VDVVTR-KVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLP--------TGTLI---------DGLLVDSPCTS 622 (910)
T ss_pred EEchhh-hhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEecc--------Cccee---------eeEecCCccee
Confidence 999987 8889999999999999999999999999999999999993 46544 22234578899
Q ss_pred EEEecCCCEEEEEeCC-CeEEEEEc
Q 008363 341 VQVSRLTGMVAYCSAD-GTVHRFQL 364 (568)
Q Consensus 341 l~~sp~~~~l~s~s~D-g~v~iwd~ 364 (568)
+.|+|+|.+|||...| .-|++|-=
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999999999 67999964
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.75 E-value=2.3e-16 Score=163.24 Aligned_cols=179 Identities=17% Similarity=0.240 Sum_probs=143.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTAGHGG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v 258 (568)
++++.+ +-|++.+.|+..|+|-+|+++++ .....| ..|.++|++++....+ +.+++++.+| +
T Consensus 452 ~av~vs--~CGNF~~IG~S~G~Id~fNmQSG------i~r~sf~~~~ah~~~V~gla~D~~n------~~~vsa~~~Gil 517 (910)
T KOG1539|consen 452 TAVCVS--FCGNFVFIGYSKGTIDRFNMQSG------IHRKSFGDSPAHKGEVTGLAVDGTN------RLLVSAGADGIL 517 (910)
T ss_pred EEEEEe--ccCceEEEeccCCeEEEEEcccC------eeecccccCccccCceeEEEecCCC------ceEEEccCcceE
Confidence 566655 66889999999999999999977 455566 5899999999999888 8999999999 9
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
++||.... ..+..+. -...+.++.++.....++++.+|-.|+++|.. +.+. ++.|.||...|
T Consensus 518 kfw~f~~k-~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~--------t~kv--------vR~f~gh~nri 579 (910)
T KOG1539|consen 518 KFWDFKKK-VLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVV--------TRKV--------VREFWGHGNRI 579 (910)
T ss_pred EEEecCCc-ceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEch--------hhhh--------hHHhhccccce
Confidence 99999976 4444442 24567889999888899999999999999993 3333 36889999999
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
++++|||+|++|++++.|++|++||+-++.+..-..-......+ ++++.+..++.
T Consensus 580 td~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl--s~SPngD~LAT 634 (910)
T KOG1539|consen 580 TDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL--SFSPNGDFLAT 634 (910)
T ss_pred eeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee--EECCCCCEEEE
Confidence 99999999999999999999999999888765432222222222 67777777765
No 148
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=5.8e-17 Score=154.54 Aligned_cols=167 Identities=16% Similarity=0.342 Sum_probs=136.5
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+||++.| +.++|+|+.| ..||+||.|.+|.||.+....... -..++..+.+|...|--|+|+|.. .++|+|+
T Consensus 78 ~GHt~~v-LDi~w~PfnD-~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA-----~NVLlsa 150 (472)
T KOG0303|consen 78 CGHTAPV-LDIDWCPFND-CVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA-----PNVLLSA 150 (472)
T ss_pred cCccccc-cccccCccCC-ceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc-----hhhHhhc
Confidence 8999999 9999999866 699999999999999987554322 236788999999999999999997 5899999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+.|. |.+|++.++ ..+.++. |++-|++++|+.+|..|++++.|..|||||.|. |+.+ ..-.
T Consensus 151 g~Dn~v~iWnv~tg-eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~--------~~~v--------~e~~ 212 (472)
T KOG0303|consen 151 GSDNTVSIWNVGTG-EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR--------GTVV--------SEGV 212 (472)
T ss_pred cCCceEEEEeccCC-ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC--------CcEe--------eecc
Confidence 9998 999999998 6666665 999999999999999999999999999999964 6554 3445
Q ss_pred cCCCC-EEEEEEecCCCEEEEEe---CCCeEEEEEcCC
Q 008363 333 CSSFA-IWSVQVSRLTGMVAYCS---ADGTVHRFQLTA 366 (568)
Q Consensus 333 ~h~~~-V~~l~~sp~~~~l~s~s---~Dg~v~iwd~~~ 366 (568)
+|.+. -..+.|-.++.++.||- .+..+-+||...
T Consensus 213 ~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 213 AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred cccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 66643 33456777777444432 578899998754
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=3.2e-17 Score=160.20 Aligned_cols=209 Identities=13% Similarity=0.233 Sum_probs=160.2
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..|++....+....|+.++.++ .++++|+..+.|+|||+....+.+.+
T Consensus 70 ~Vp~~~k~~gd~~~Cv~~~s~S-------------~y~~sgG~~~~Vkiwdl~~kl~hr~l------------------- 117 (673)
T KOG4378|consen 70 EVPRVRKLTGDNAFCVACASQS-------------LYEISGGQSGCVKIWDLRAKLIHRFL------------------- 117 (673)
T ss_pred ccceeeccccchHHHHhhhhcc-------------eeeeccCcCceeeehhhHHHHHhhhc-------------------
Confidence 3455555555544444344443 58999999999999999975555554
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~ 246 (568)
.+|...| ++|.++ ....+||+++..|-|.|..+.++ .....|... ...|+-+.|+|..
T Consensus 118 -------kdh~stv-t~v~YN--~~DeyiAsvs~gGdiiih~~~t~------~~tt~f~~~sgqsvRll~ys~sk----- 176 (673)
T KOG4378|consen 118 -------KDHQSTV-TYVDYN--NTDEYIASVSDGGDIIIHGTKTK------QKTTTFTIDSGQSVRLLRYSPSK----- 176 (673)
T ss_pred -------cCCccee-EEEEec--CCcceeEEeccCCcEEEEecccC------ccccceecCCCCeEEEeeccccc-----
Confidence 7899999 999998 66789999999999999999876 444455333 3346789999987
Q ss_pred CcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
..+|.+++++| |.+||+... .+. .....|..+...|||+|.... |++.|.|..|++||.+... ..
T Consensus 177 r~lL~~asd~G~VtlwDv~g~-sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~--------s~--- 244 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGM-SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA--------ST--- 244 (673)
T ss_pred ceeeEeeccCCeEEEEeccCC-CcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc--------cc---
Confidence 36788889999 999999977 555 445589999999999997654 5566999999999996422 10
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..+ ....+...++|+++|.+|+.|...|.|..||++..
T Consensus 245 -----~~l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 245 -----DRL-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----cee-eecCCcceeeecCCceEEEeecCCceEEEEecccC
Confidence 122 23457889999999999999999999999999654
No 150
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=8.6e-17 Score=147.54 Aligned_cols=222 Identities=19% Similarity=0.335 Sum_probs=159.5
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC-------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF 168 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 168 (568)
+-|..+-||.++-+|..+ ++|+++..+ -.+.||.++........ .+ .
T Consensus 59 f~h~agEvw~las~P~d~---------~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~----------------~t-l 112 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQ---------RILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS----------------ST-L 112 (370)
T ss_pred hhcCCcceehhhcCCCCC---------ceEEEEEeccCCCcceeeEEEEecccccCcccc----------------ch-h
Confidence 346666899999999886 788888653 24678998862211000 00 0
Q ss_pred eecc-cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 169 RCSM-LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 169 ~~~~-~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.|.. +...+-+.| .||.|. |++..|++-. |..|.+|++..+......-+...-..|....++-+|+|.. +.
T Consensus 113 E~v~~Ldteavg~i-~cvew~--Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH----dg 184 (370)
T KOG1007|consen 113 ECVASLDTEAVGKI-NCVEWE--PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH----DG 184 (370)
T ss_pred hHhhcCCHHHhCce-eeEEEc--CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC----cc
Confidence 1111 112455677 999999 7788888776 8899999998663210000011112355667888999944 34
Q ss_pred cEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCE-EEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 248 NVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGC-VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 248 ~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~-l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
+.+++.++.++..||+|+.......-..|...|..+.|+|+.++ |+++++||.|+|||+|+.+ .
T Consensus 185 nqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------------~ 249 (370)
T KOG1007|consen 185 NQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------------F 249 (370)
T ss_pred ceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC---------------c
Confidence 88999888889999999874333444578888999999998765 5667889999999999855 4
Q ss_pred ceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
++..+.+|...||++.|+|.. .+|+++|.|..|.+|....
T Consensus 250 pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 250 PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred cccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 457899999999999999984 8999999999999998854
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=3.1e-17 Score=164.37 Aligned_cols=212 Identities=17% Similarity=0.275 Sum_probs=159.0
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
.++..|.++.|.|-.+ ..||++++||.|+||.+..+...... .+....+.+|
T Consensus 625 ~Ngt~vtDl~WdPFD~---------~rLAVa~ddg~i~lWr~~a~gl~e~~-------------------~tPe~~lt~h 676 (1012)
T KOG1445|consen 625 FNGTLVTDLHWDPFDD---------ERLAVATDDGQINLWRLTANGLPENE-------------------MTPEKILTIH 676 (1012)
T ss_pred ccCceeeecccCCCCh---------HHeeecccCceEEEEEeccCCCCccc-------------------CCcceeeecc
Confidence 3445677999999877 79999999999999999874332211 1122334789
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
...| +++.|+|... +.|+++++|-+|+|||+.+. .....+.+|++.|.+++|+|+| ..+|+.+.|+
T Consensus 677 ~eKI-~slRfHPLAa-dvLa~asyd~Ti~lWDl~~~------~~~~~l~gHtdqIf~~AWSpdG------r~~AtVcKDg 742 (1012)
T KOG1445|consen 677 GEKI-TSLRFHPLAA-DVLAVASYDSTIELWDLANA------KLYSRLVGHTDQIFGIAWSPDG------RRIATVCKDG 742 (1012)
T ss_pred cceE-EEEEecchhh-hHhhhhhccceeeeeehhhh------hhhheeccCcCceeEEEECCCC------cceeeeecCc
Confidence 9999 9999998754 69999999999999999977 6677889999999999999999 8999999999
Q ss_pred -EEEEECCCCCcceeeeCCCC-CCeEEEEEcCCCCEEEEEeCC----CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 258 -LKFWDIRDPFRPLWDIHPAP-KFIYGLDWLPDPGCVILSFDD----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 258 -v~lwD~~~~~~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
|++|..+....+++.-.+-- ..--.|.|.-+|+++++.+.| ..|.+||..... +.++. ...+
T Consensus 743 ~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~------~~pl~------t~~l 810 (1012)
T KOG1445|consen 743 TLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD------LRPLY------TQVL 810 (1012)
T ss_pred eEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc------CCcce------eeee
Confidence 99999998877776554322 223578898899999988764 568999986643 33321 1122
Q ss_pred ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
....+ +.--.+.+|. -++++|-.|..|.+|++
T Consensus 811 Dvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 811 DVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred cccCc-cccccccCCCceEEEecCCCceEEEEEe
Confidence 21111 1222455564 56788889999999988
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.72 E-value=1.3e-16 Score=148.83 Aligned_cols=218 Identities=17% Similarity=0.226 Sum_probs=164.5
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
|+. ..+.++|+-+.. ..--+||+|+.-|.|+|.|+.++++...+ .+|
T Consensus 88 ~~E-sfytcsw~yd~~------~~~p~la~~G~~GvIrVid~~~~~~~~~~--------------------------~gh 134 (385)
T KOG1034|consen 88 HDE-SFYTCSWSYDSN------TGNPFLAAGGYLGVIRVIDVVSGQCSKNY--------------------------RGH 134 (385)
T ss_pred CCc-ceEEEEEEecCC------CCCeeEEeecceeEEEEEecchhhhccce--------------------------ecc
Confidence 444 556788876531 11148999999999999999998888776 788
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
...| ..+.++|.. .+++++||.|.+|++|++++. .++..| .+|.+.|.++.|++++ .+|+|+|
T Consensus 135 G~sI-Neik~~p~~-~qlvls~SkD~svRlwnI~~~------~Cv~VfGG~egHrdeVLSvD~~~~g------d~i~ScG 200 (385)
T KOG1034|consen 135 GGSI-NEIKFHPDR-PQLVLSASKDHSVRLWNIQTD------VCVAVFGGVEGHRDEVLSVDFSLDG------DRIASCG 200 (385)
T ss_pred Cccc-hhhhcCCCC-CcEEEEecCCceEEEEeccCC------eEEEEecccccccCcEEEEEEcCCC------CeeeccC
Confidence 8999 999999663 369999999999999999977 787776 4699999999999999 8999999
Q ss_pred CCC-EEEEECCCCC-----------------cc-------ee---eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 255 HGG-LKFWDIRDPF-----------------RP-------LW---DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 255 ~d~-v~lwD~~~~~-----------------~~-------~~---~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
.|. |++|++.... ++ +. +-.-|..+|-|+.|- |.++++=+-++.|..|..
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~p 278 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKP 278 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEec
Confidence 999 9999998331 00 00 122477778888887 788888888999999987
Q ss_pred cccccCCC--CCCCCccCccccceEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCe
Q 008363 307 LKAAYDVP--ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 307 ~~~~~~~~--~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
-....... ..++. ....+..+......||-+.|+-| +++||.|...|.|++|||....
T Consensus 279 gkl~e~~~~vkp~es----~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 279 GKLEESIHNVKPPES----ATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred chhhhhhhccCCCcc----ceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 43332200 00100 11234566667778888777655 7999999999999999997543
No 153
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=1e-15 Score=146.82 Aligned_cols=168 Identities=18% Similarity=0.293 Sum_probs=124.2
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.-|....+..+.|.++.. +.||+|+.|..|+||-+.....-. .+..+ .+...+.
T Consensus 9 ~wH~~~pv~s~dfq~n~~---------~~laT~G~D~~iriW~v~r~~~~~-----------~~~~V------~y~s~Ls 62 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKNSL---------NKLATAGGDKDIRIWKVNRSEPGG-----------GDMKV------EYLSSLS 62 (434)
T ss_pred EecCCCceEEEEeccCcc---------cceecccCccceeeeeeeecCCCC-----------CceeE------EEeeccc
Confidence 346666788999999884 599999999999999987633221 11111 2333448
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC----------CCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS----------SIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~----------~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.|...| .++.|+ |+|++||+|+.+|.|.+|-...... .......+.+.+|...|+.++|+|++
T Consensus 63 ~H~~aV-N~vRf~--p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~---- 135 (434)
T KOG1009|consen 63 RHTRAV-NVVRFS--PDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS---- 135 (434)
T ss_pred CCccee-EEEEEc--CCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC----
Confidence 899999 999999 8899999999999999998762110 11123455778899999999999999
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG 299 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg 299 (568)
.++++++.|. +++||+..+ ..+..+..|...+..++|.|.++++++-+.|.
T Consensus 136 --~~l~s~s~dns~~l~Dv~~G-~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 136 --NFLVSGSVDNSVRLWDVHAG-QLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred --ceeeeeeccceEEEEEeccc-eeEeeccccccccceeecchhhhhhhhhccCc
Confidence 8999999998 999999987 66666666666666666666554444444433
No 154
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=5.7e-16 Score=150.94 Aligned_cols=249 Identities=14% Similarity=0.157 Sum_probs=184.0
Q ss_pred EEEEEeCCC-cEEEEECCCCceeeEEeccCC--------------c-cCCCCceEEEeecceecccc--cCCcCccceEE
Q 008363 124 YLAVLLGNG-SLEVWEVPLLRTMKAIYLSSM--------------K-EGTDPRFVKLEPVFRCSMLK--CGGTQSIPLTM 185 (568)
Q Consensus 124 ~las~s~dg-~V~iwd~~~~~~~~~l~~~~~--------------~-~~~~~~~v~~~~~~~~~~~~--~~h~~~V~~~v 185 (568)
++.+++.|- ++.+||+.+|..+..+.+... + .......+.+|++..+.... .--.+.| .++
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v-~al 87 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPV-HAL 87 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccce-eee
Confidence 344444444 489999999888877766521 1 11222355666665533222 2234556 888
Q ss_pred EEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363 186 EWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIR 264 (568)
Q Consensus 186 ~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~ 264 (568)
+-+ |.|.+|+.|+..|.|++|.+.++ ..+..+.+|-..|+++.|+.++ .+|+|||.|+ |.+|++.
T Consensus 88 ~s~--n~G~~l~ag~i~g~lYlWelssG------~LL~v~~aHYQ~ITcL~fs~dg------s~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 88 ASS--NLGYFLLAGTISGNLYLWELSSG------ILLNVLSAHYQSITCLKFSDDG------SHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ecC--CCceEEEeecccCcEEEEEeccc------cHHHHHHhhccceeEEEEeCCC------cEEEecCCCccEEEEEEE
Confidence 866 88988888889999999999988 8888889999999999999999 8999999999 9999874
Q ss_pred CC--------CcceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 265 DP--------FRPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 265 ~~--------~~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
.- ..++..+..|.-+|+.+...+. ..+|++++.|.++++||+. .|.++ .++. -
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS--------~g~LL--------lti~-f 216 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLS--------LGVLL--------LTIT-F 216 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEec--------cceee--------EEEe-c
Confidence 32 2677889999999999887764 4689999999999999994 36554 2332 4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc--------CC--------CCCc-ceeeeecccCCCCceEEcc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD--------HS--------RNRP-MHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~--------~~--------~~~~-~~~~~~s~~~~~~~i~~~~ 397 (568)
..++.+++.+|.+..+..|+.+|.|.+.++..-.-... .. .+.. ..+.|-+++.||..+.+|.
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 56889999999999999999999999998864331110 00 0111 2456889999999999987
Q ss_pred cCCCCCc
Q 008363 398 PLDNTPV 404 (568)
Q Consensus 398 ~~~~~~~ 404 (568)
..+.+.+
T Consensus 297 ~dg~Vcv 303 (476)
T KOG0646|consen 297 EDGKVCV 303 (476)
T ss_pred CCCCEEE
Confidence 6666643
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.71 E-value=1e-14 Score=145.26 Aligned_cols=224 Identities=9% Similarity=0.057 Sum_probs=153.0
Q ss_pred eEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeecc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPVF 168 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~~ 168 (568)
+.++|+|++ ..+ ++++.++.|++||+.+++....+..+.. +.+..+..+.+|+..
T Consensus 34 ~~l~~~~dg----------~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 34 RGITLSKDG----------KLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred CceEECCCC----------CEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 489999999 555 6777899999999998777665543221 233456678888775
Q ss_pred ee--cccccCCcCccceEEEEccCCCCCEEEEEeCCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 169 RC--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 169 ~~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
.. ..... +...+ .+++|+ |+|.++++++.++ .+.+||..+. ..+..+.. ...+..++|+|++
T Consensus 104 ~~~~~~~~~-~~~~~-~~~~~~--~dg~~l~~~~~~~~~~~~~d~~~~------~~~~~~~~-~~~~~~~~~s~dg---- 168 (300)
T TIGR03866 104 TRKVLAEIP-VGVEP-EGMAVS--PDGKIVVNTSETTNMAHFIDTKTY------EIVDNVLV-DQRPRFAEFTADG---- 168 (300)
T ss_pred CCeEEeEee-CCCCc-ceEEEC--CCCCEEEEEecCCCeEEEEeCCCC------eEEEEEEc-CCCccEEEECCCC----
Confidence 42 11111 12234 788988 8899999988775 4677898755 44443322 3346789999998
Q ss_pred CCcEE-EEEcCCC-EEEEECCCCCcceeeeCCC-----CC--CeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCC
Q 008363 246 SANVI-LTAGHGG-LKFWDIRDPFRPLWDIHPA-----PK--FIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 246 ~~~~l-as~s~d~-v~lwD~~~~~~~~~~~~~h-----~~--~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~ 315 (568)
.+| +++..++ |++||+.+. ..+..+..+ .. ....++|+|++++++++ +.++.|.+||++.
T Consensus 169 --~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~------- 238 (300)
T TIGR03866 169 --KELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT------- 238 (300)
T ss_pred --CEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC-------
Confidence 666 4555577 999999976 444333211 11 23568899999987664 5577899999943
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCCCeeecc
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~~~~~~ 372 (568)
++.+ ..+ .+...+++++|+|++.+|+++ +.+|.|++||+.+++....
T Consensus 239 -~~~~--------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~ 286 (300)
T TIGR03866 239 -YEVL--------DYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKS 286 (300)
T ss_pred -CcEE--------EEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 3332 222 244578999999999998876 4699999999988765443
No 156
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.71 E-value=7e-17 Score=158.00 Aligned_cols=204 Identities=15% Similarity=0.212 Sum_probs=167.1
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
|++..-+...+..+++++.+|+. ++..+++.||.|.|||+.+...++.|
T Consensus 499 prikaeltssapaCyALa~spDa----------kvcFsccsdGnI~vwDLhnq~~Vrqf--------------------- 547 (705)
T KOG0639|consen 499 PRIKAELTSSAPACYALAISPDA----------KVCFSCCSDGNIAVWDLHNQTLVRQF--------------------- 547 (705)
T ss_pred cchhhhcCCcchhhhhhhcCCcc----------ceeeeeccCCcEEEEEcccceeeecc---------------------
Confidence 33333333444456689999999 89999999999999999998777776
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.||+..+ .||+.+ ++|..|-+|+-|.+|+-||++.+ +.+..+ ...+.|.++.++|.+ .+
T Consensus 548 -----qGhtDGa-scIdis--~dGtklWTGGlDntvRcWDlreg------rqlqqh-dF~SQIfSLg~cP~~------dW 606 (705)
T KOG0639|consen 548 -----QGHTDGA-SCIDIS--KDGTKLWTGGLDNTVRCWDLREG------RQLQQH-DFSSQIFSLGYCPTG------DW 606 (705)
T ss_pred -----cCCCCCc-eeEEec--CCCceeecCCCccceeehhhhhh------hhhhhh-hhhhhheecccCCCc------cc
Confidence 8999998 999988 99999999999999999999976 333322 236789999999999 89
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+|.|-..+ +.|...... ..+.++-|..-|.++.|.+.|+++++.+.|+.+..|.... |..+
T Consensus 607 lavGMens~vevlh~skp--~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPy--------Gasi-------- 668 (705)
T KOG0639|consen 607 LAVGMENSNVEVLHTSKP--EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY--------GASI-------- 668 (705)
T ss_pred eeeecccCcEEEEecCCc--cceeecccccEEEEEEecccCceeeecCchhhhhhccCcc--------ccce--------
Confidence 99999988 988887754 3455677899999999999999999999999999998843 4221
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
.... -...|.++.++.+.+||+||+.|....||.+
T Consensus 669 Fqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 669 FQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred eecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 2222 4578999999999999999999998888876
No 157
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.71 E-value=1.7e-15 Score=148.58 Aligned_cols=221 Identities=17% Similarity=0.227 Sum_probs=162.3
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------ccCCCC-------ce
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------KEGTDP-------RF 161 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------~~~~~~-------~~ 161 (568)
.+|++++- +++...+| .|++|+.|..|..|| ...+.++.+.-+.. +.+..+ .+
T Consensus 284 ~aH~ggv~-~L~~lr~G-----------tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~ 350 (626)
T KOG2106|consen 284 HAHDGGVF-SLCMLRDG-----------TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNF 350 (626)
T ss_pred eecCCceE-EEEEecCc-----------cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccce
Confidence 48999655 99999998 577799999999999 33333333322222 122222 11
Q ss_pred EEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 162 VKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 162 v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
+-...... +.....+|.... +.++-+ |+..++++++.|+.++||+ .. +++.+. --..++.|+.|+|.
T Consensus 351 iL~Gt~~~~f~~~v~gh~del-wgla~h--ps~~q~~T~gqdk~v~lW~--~~------k~~wt~-~~~d~~~~~~fhps 418 (626)
T KOG2106|consen 351 ILQGTLENGFTLTVQGHGDEL-WGLATH--PSKNQLLTCGQDKHVRLWN--DH------KLEWTK-IIEDPAECADFHPS 418 (626)
T ss_pred EEEeeecCCceEEEEecccce-eeEEcC--CChhheeeccCcceEEEcc--CC------ceeEEE-EecCceeEeeccCc
Confidence 11111111 445667899998 999966 7788999999999999999 22 333322 23677899999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
+ .+|.|...| ..+.|..+. .+..++....++++++|+|+|.+|+.|+.|+.|+||-+.. .|..
T Consensus 419 g-------~va~Gt~~G~w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~-------~g~~ 482 (626)
T KOG2106|consen 419 G-------VVAVGTATGRWFVLDTETQ--DLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA-------NGRK 482 (626)
T ss_pred c-------eEEEeeccceEEEEecccc--eeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC-------CCcE
Confidence 7 888888888 999999873 4444444488899999999999999999999999999854 4544
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+ ..+.. .|.++|+.+.|++|+++|.+-+.|-.|.+|..
T Consensus 483 y-----~r~~k--~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 483 Y-----SRVGK--CSGSPITHLDWSSDSQFLVSNSGDYEILYWKP 520 (626)
T ss_pred E-----EEeee--ecCceeEEeeecCCCceEEeccCceEEEEEcc
Confidence 4 22223 34489999999999999999999999999944
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.70 E-value=3.9e-16 Score=152.68 Aligned_cols=238 Identities=10% Similarity=0.131 Sum_probs=165.0
Q ss_pred CCCcEEEEECCCCceeeEEeccCC-----------------ccCCCCceEEEeeccee------cccccCCcCccceEEE
Q 008363 130 GNGSLEVWEVPLLRTMKAIYLSSM-----------------KEGTDPRFVKLEPVFRC------SMLKCGGTQSIPLTME 186 (568)
Q Consensus 130 ~dg~V~iwd~~~~~~~~~l~~~~~-----------------~~~~~~~~v~~~~~~~~------~~~~~~h~~~V~~~v~ 186 (568)
....++|||+........+..++. ++...+..+.+|....- .....|. .- +||+
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~-~Cv~ 86 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NA-FCVA 86 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hH-HHHh
Confidence 334689999877444433333322 34556667776654321 1111122 21 4555
Q ss_pred EccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC
Q 008363 187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD 265 (568)
Q Consensus 187 ~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~ 265 (568)
.. ....++++|+..++|+|||++.. .+.+.+++|...|++|.++-.. .+||+++.+| |.|..+.+
T Consensus 87 ~~--s~S~y~~sgG~~~~Vkiwdl~~k------l~hr~lkdh~stvt~v~YN~~D------eyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 87 CA--SQSLYEISGGQSGCVKIWDLRAK------LIHRFLKDHQSTVTYVDYNNTD------EYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred hh--hcceeeeccCcCceeeehhhHHH------HHhhhccCCcceeEEEEecCCc------ceeEEeccCCcEEEEeccc
Confidence 43 45579999999999999999965 6777889999999999999988 8999999999 99999998
Q ss_pred CCcceeeeC-CCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363 266 PFRPLWDIH-PAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV 343 (568)
Q Consensus 266 ~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~ 343 (568)
.. ....|. +....|.-+.|+|..++|+. ++++|.|.|||+.... ..++-...|..+...|+|
T Consensus 153 ~~-~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---------------p~~~~~~~HsAP~~gicf 216 (673)
T KOG4378|consen 153 KQ-KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---------------PIFHASEAHSAPCRGICF 216 (673)
T ss_pred Cc-cccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---------------cccchhhhccCCcCccee
Confidence 74 333332 33455679999998887665 5889999999994322 223455689999999999
Q ss_pred ecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 344 SRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 344 sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
+|.. .+|++.+.|..|.+||........... ....+...++.++|.++..|+..+.+
T Consensus 217 spsne~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf~~~G~~L~aG~s~G~~ 274 (673)
T KOG4378|consen 217 SPSNEALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAFSECGTYLCAGNSKGEL 274 (673)
T ss_pred cCCccceEEEecccceEEEeecccccccceee--ecCCcceeeecCCceEEEeecCCceE
Confidence 9985 889999999999999997543322111 01113334677777777776544443
No 159
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.70 E-value=7.6e-15 Score=144.14 Aligned_cols=244 Identities=14% Similarity=0.153 Sum_probs=176.3
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..+..+....|.+++|.+++ -+++|..+|.|.||+..+.+..+..
T Consensus 239 ~~fek~ekk~Vl~v~F~eng-----------dviTgDS~G~i~Iw~~~~~~~~k~~------------------------ 283 (626)
T KOG2106|consen 239 GIFEKREKKFVLCVTFLENG-----------DVITGDSGGNILIWSKGTNRISKQV------------------------ 283 (626)
T ss_pred eccccccceEEEEEEEcCCC-----------CEEeecCCceEEEEeCCCceEEeEe------------------------
Confidence 33455666677899999998 4889999999999999876555444
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------------------------CC
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------------------------ID 218 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------------------------~~ 218 (568)
..|.+.| +++.-. .+| .|++|+.|..|..||-.-.+.. ..
T Consensus 284 --~aH~ggv-~~L~~l--r~G-tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~ 357 (626)
T KOG2106|consen 284 --HAHDGGV-FSLCML--RDG-TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLE 357 (626)
T ss_pred --eecCCce-EEEEEe--cCc-cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeec
Confidence 4788888 888866 676 6677999999999984322110 00
Q ss_pred CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC
Q 008363 219 SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 219 ~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
........+|......++.+|+. +.|+|++.|+ +++|+ ..++.++.. -..++.++.|+|.| .|+.|..
T Consensus 358 ~~f~~~v~gh~delwgla~hps~------~q~~T~gqdk~v~lW~---~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~ 426 (626)
T KOG2106|consen 358 NGFTLTVQGHGDELWGLATHPSK------NQLLTCGQDKHVRLWN---DHKLEWTKI-IEDPAECADFHPSG-VVAVGTA 426 (626)
T ss_pred CCceEEEEecccceeeEEcCCCh------hheeeccCcceEEEcc---CCceeEEEE-ecCceeEeeccCcc-eEEEeec
Confidence 01112334688889999999998 8999999999 99999 225554432 25678999999999 8999999
Q ss_pred CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee-ccCCCC
Q 008363 298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE-KDHSRN 376 (568)
Q Consensus 298 dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~-~~~~~~ 376 (568)
.|...+.|..+ +.+-++.....++++++|+|+|.+||.|+.|+.|+||-+...... ......
T Consensus 427 ~G~w~V~d~e~-----------------~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 427 TGRWFVLDTET-----------------QDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred cceEEEEeccc-----------------ceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence 99999999954 112233334789999999999999999999999999998754322 111111
Q ss_pred CcceeeeecccCCCCceEEcccCCCCCcc
Q 008363 377 RPMHFLCGSVTEDESAITVNTPLDNTPVP 405 (568)
Q Consensus 377 ~~~~~~~~s~~~~~~~i~~~~~~~~~~~~ 405 (568)
....+.---++.|+..+...+-...+-+.
T Consensus 490 ~gs~ithLDwS~Ds~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 490 SGSPITHLDWSSDSQFLVSNSGDYEILYW 518 (626)
T ss_pred cCceeEEeeecCCCceEEeccCceEEEEE
Confidence 22222222578888888877766666443
No 160
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.70 E-value=1.4e-15 Score=141.67 Aligned_cols=228 Identities=16% Similarity=0.230 Sum_probs=172.8
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------ccCCC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------KEGTD 158 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------~~~~~ 158 (568)
--.++.|++.+|-+.- ....+...++|+.+.+.-|++||.-+|+....+..-.. +-...
T Consensus 101 ~~eg~tvydy~wYs~M---~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy 177 (406)
T KOG2919|consen 101 YQEGETVYDYCWYSRM---KSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY 177 (406)
T ss_pred eccCCEEEEEEeeecc---ccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence 3456688899997432 11123337999999999999999999876655533222 33445
Q ss_pred CceEEEeecce----e------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363 159 PRFVKLEPVFR----C------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD 228 (568)
Q Consensus 159 ~~~v~~~~~~~----~------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 228 (568)
.+.|++.+..+ | ..-..+..+.| .|++|+|. +...++.|+.-.++-|+.-... .++..+.+|
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~gii-sc~a~sP~-~~~~~a~gsY~q~~giy~~~~~------~pl~llggh 249 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII-SCFAFSPM-DSKTLAVGSYGQRVGIYNDDGR------RPLQLLGGH 249 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhccccccccee-eeeeccCC-CCcceeeecccceeeeEecCCC------Cceeeeccc
Confidence 66677766643 1 11234557777 99999977 3459999999999999987755 888889999
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCC--CEEEEECCCCCcceeeeCCCCC-CeEEE--EEcCCCCEEEEEeCCCcEEE
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHG--GLKFWDIRDPFRPLWDIHPAPK-FIYGL--DWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d--~v~lwD~~~~~~~~~~~~~h~~-~i~~l--~~sp~~~~l~s~~~dg~I~l 303 (568)
.+.|+.+.|+++| +.|.+|... .|..||+|....++..+..|.+ .-..| ...|++++|++|+.||.|++
T Consensus 250 ~gGvThL~~~edG------n~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~v 323 (406)
T KOG2919|consen 250 GGGVTHLQWCEDG------NKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRV 323 (406)
T ss_pred CCCeeeEEeccCc------CeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEE
Confidence 9999999999999 788888763 3999999988888888888766 33344 44689999999999999999
Q ss_pred EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363 304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D 356 (568)
||+... |.. +..+..|...|+.++++|--.++++++..
T Consensus 324 wdlk~~-------gn~--------~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 324 WDLKDL-------GNE--------VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EecCCC-------CCc--------ccccccccccccceecCcccceeeeccCc
Confidence 999653 332 35777889999999999998888888754
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.70 E-value=3.9e-16 Score=157.38 Aligned_cols=235 Identities=17% Similarity=0.261 Sum_probs=180.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
+|++++|-|+| ..|+.+.+ ..+.|||...|..++++ .+|...|
T Consensus 14 ci~d~afkPDG----------sqL~lAAg-~rlliyD~ndG~llqtL--------------------------KgHKDtV 56 (1081)
T KOG1538|consen 14 CINDIAFKPDG----------TQLILAAG-SRLLVYDTSDGTLLQPL--------------------------KGHKDTV 56 (1081)
T ss_pred chheeEECCCC----------ceEEEecC-CEEEEEeCCCccccccc--------------------------ccccceE
Confidence 77899999999 55655544 57999999999988887 8999999
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw 261 (568)
+||+|+ .+|..+|+|+.|..|.+|+-.-. -+..+ .|...|.|+.|+|-. +.|+|++-.-.-+|
T Consensus 57 -ycVAys--~dGkrFASG~aDK~VI~W~~klE-------G~LkY-SH~D~IQCMsFNP~~------h~LasCsLsdFglW 119 (1081)
T KOG1538|consen 57 -YCVAYA--KDGKRFASGSADKSVIIWTSKLE-------GILKY-SHNDAIQCMSFNPIT------HQLASCSLSDFGLW 119 (1081)
T ss_pred -EEEEEc--cCCceeccCCCceeEEEeccccc-------ceeee-ccCCeeeEeecCchH------HHhhhcchhhcccc
Confidence 999999 99999999999999999986532 22223 699999999999998 89999999888899
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
..... .+... .....|.+++|..||++++.|-.+|+|.+=+- +|++- ..+..-.|.+.+|+++
T Consensus 120 S~~qK--~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk---------~gEek-----~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 120 SPEQK--SVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNK---------NGEEK-----VKIERPGGSNSPIWSI 182 (1081)
T ss_pred Chhhh--hHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecC---------CCCcc-----eEEeCCCCCCCCceEE
Confidence 87653 22111 12456889999999999999999999987643 45442 2222334577899999
Q ss_pred EEecCC-----CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCcccccc
Q 008363 342 QVSRLT-----GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPVPLKKT 409 (568)
Q Consensus 342 ~~sp~~-----~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~~ 409 (568)
+|+|.. ..+++..+..++.++.+......++..-.-. -.|.++-+.|+.+.+|.......+..++.
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd--P~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD--PCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC--chhheeccCCcEEEEccCCCceEEEeecC
Confidence 999973 5899999999999999987665554222222 34668888888888876666555554444
No 162
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3e-15 Score=151.97 Aligned_cols=206 Identities=16% Similarity=0.297 Sum_probs=166.1
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..++..+.+-+++|++.+ .|.+.+.+|+|.-||+.+++....+
T Consensus 64 i~g~~drsIE~L~W~e~~-----------RLFS~g~sg~i~EwDl~~lk~~~~~-------------------------- 106 (691)
T KOG2048|consen 64 IHGPEDRSIESLAWAEGG-----------RLFSSGLSGSITEWDLHTLKQKYNI-------------------------- 106 (691)
T ss_pred EecCCCCceeeEEEccCC-----------eEEeecCCceEEEEecccCceeEEe--------------------------
Confidence 456777788899999665 7889999999999999998877665
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
....+.| ++++-+ |.+..++.||.||.+..++...+. ....+.+...++.|.+++|+|++ ..|++|+
T Consensus 107 d~~gg~I-Wsiai~--p~~~~l~IgcddGvl~~~s~~p~~----I~~~r~l~rq~sRvLslsw~~~~------~~i~~Gs 173 (691)
T KOG2048|consen 107 DSNGGAI-WSIAIN--PENTILAIGCDDGVLYDFSIGPDK----ITYKRSLMRQKSRVLSLSWNPTG------TKIAGGS 173 (691)
T ss_pred cCCCcce-eEEEeC--CccceEEeecCCceEEEEecCCce----EEEEeecccccceEEEEEecCCc------cEEEecc
Confidence 4455677 999987 778899999999977777776552 24445666667999999999999 7899999
Q ss_pred CCC-EEEEECCCCCcceee-------eCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 255 HGG-LKFWDIRDPFRPLWD-------IHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~-------~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.|+ |++||+..+. .+.. +.. ...-|+++.|..++ .|++|..-|+|.+||.. .|.++
T Consensus 174 ~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~--------~gTLi----- 238 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSI--------FGTLI----- 238 (691)
T ss_pred cCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEccc--------Ccchh-----
Confidence 999 9999999873 3331 111 23346888888665 58999999999999984 46554
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
..+..|.+.|.+++..+++.++++++.|+.|..|...+..
T Consensus 239 ---qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 239 ---QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNK 278 (691)
T ss_pred ---hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCc
Confidence 4778899999999999999999999999999999887663
No 163
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=3.2e-15 Score=156.55 Aligned_cols=210 Identities=14% Similarity=0.161 Sum_probs=152.6
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE---ecc--------C---CccCCCCceEEEeecce--ecccccCCcCccceEEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAI---YLS--------S---MKEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTME 186 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l---~~~--------~---~~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~ 186 (568)
+.|++|+.+++|.+|.++.++.-..| ..+ . -+.|++|..|++-.... -...+.+|.++| ++|.
T Consensus 67 ~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apV-l~l~ 145 (933)
T KOG1274|consen 67 NHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPV-LQLS 145 (933)
T ss_pred cceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCce-eeee
Confidence 68999999999999999986543222 111 1 16788899999888776 345678999999 9999
Q ss_pred EccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363 187 WSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSAD-TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI 263 (568)
Q Consensus 187 ~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~ 263 (568)
|+ |++.+||+.+.||+|++||+..+........+. .+..- ...+..++|+|++ ..|+..+.|+ |++|+.
T Consensus 146 ~~--p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~------g~la~~~~d~~Vkvy~r 217 (933)
T KOG1274|consen 146 YD--PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG------GTLAVPPVDNTVKVYSR 217 (933)
T ss_pred Ec--CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC------CeEEeeccCCeEEEEcc
Confidence 99 889999999999999999999774321111111 11111 4557889999997 4555555555 999999
Q ss_pred CCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 264 RDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 264 ~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
.++ .....+. .+...+..+.|+|.|.||++++.||.|.|||..+.. . ..-...|+++
T Consensus 218 ~~w-e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~-------------------~-~~~~~~Vc~~ 276 (933)
T KOG1274|consen 218 KGW-ELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE-------------------R-HEFKRAVCCE 276 (933)
T ss_pred CCc-eeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccch-------------------h-ccccceeEEE
Confidence 987 5554444 334448999999999999999999999999995411 1 2234689999
Q ss_pred EEecCCCEEEEEeCCCeEEEE
Q 008363 342 QVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iw 362 (568)
+|.|+...|-.-..-|...+|
T Consensus 277 aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 277 AWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ecCCCCCeeEEEeeccccccC
Confidence 999998766555555554444
No 164
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.69 E-value=1.8e-15 Score=157.94 Aligned_cols=249 Identities=15% Similarity=0.145 Sum_probs=175.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.|.+++|+|..+ .+||.|+.+|.|.+||+..+.. ...+ ......|..
T Consensus 244 ~v~~~~f~p~~p---------~ll~gG~y~GqV~lWD~~~~~~~~~s~l----------------------s~~~~sh~~ 292 (555)
T KOG1587|consen 244 EVTCLKFCPFDP---------NLLAGGCYNGQVVLWDLRKGSDTPPSGL----------------------SALEVSHSE 292 (555)
T ss_pred ceeEEEeccCCc---------ceEEeeccCceEEEEEccCCCCCCCccc----------------------ccccccCCc
Confidence 445999999987 8999999999999999998554 2221 112267888
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee------CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS------ADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+ +.+.|...+.+.-|++++.||.|..|+++.-.......+..... .-...+++++|.+.. ++.|+.|
T Consensus 293 ~v-~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----p~~FiVG 366 (555)
T KOG1587|consen 293 PV-TAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----PNHFIVG 366 (555)
T ss_pred Ce-EEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----CceEEEE
Confidence 98 99999866555679999999999999887443322222222221 223468999999986 6889999
Q ss_pred cCCC-EEE---EECCCCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 254 GHGG-LKF---WDIRDPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 254 s~d~-v~l---wD~~~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
++.| |.- ++.+... ..+..+..|.++|+++.++|-+..++.++.|.+|+||......
T Consensus 367 Te~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~--------------- 431 (555)
T KOG1587|consen 367 TEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA--------------- 431 (555)
T ss_pred cCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC---------------
Confidence 9998 655 3333322 2234556789999999999998888877779999999984211
Q ss_pred cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCC-CCcceeeeecccCCCCceEEcccCCCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSR-NRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
.++..+..+...|++++|||.. ..++++..||.|.|||+.....+-.... ...+...+..+++.+..+++|...+.+
T Consensus 432 ~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~ 510 (555)
T KOG1587|consen 432 SPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTT 510 (555)
T ss_pred CcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcE
Confidence 3445777788889999999985 7888888999999999964332211000 012334444566667777777666655
No 165
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.8e-16 Score=153.24 Aligned_cols=231 Identities=17% Similarity=0.212 Sum_probs=167.7
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+.||+| ||.++.|+.+| .+|++|++|-.+.|||.-..+.+..+ .
T Consensus 46 L~GH~G-CVN~LeWn~dG----------~lL~SGSDD~r~ivWd~~~~KllhsI-------------------------~ 89 (758)
T KOG1310|consen 46 LTGHTG-CVNCLEWNADG----------ELLASGSDDTRLIVWDPFEYKLLHSI-------------------------S 89 (758)
T ss_pred hccccc-eecceeecCCC----------CEEeecCCcceEEeecchhcceeeee-------------------------e
Confidence 469999 88899999999 79999999999999999876666554 1
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.||+..| +++.|-|..+.+++++|..|..|+++|+...+.. ....+...+..|...|..|+-.|.+ |+.|
T Consensus 90 TgHtaNI-FsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-----Phtf 163 (758)
T KOG1310|consen 90 TGHTANI-FSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-----PHTF 163 (758)
T ss_pred cccccce-eEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC-----CceE
Confidence 7999999 9999999888889999999999999999853221 1224566778899999999999997 7999
Q ss_pred EEEcCCC-EEEEECCCCCcceee---------eCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWD---------IHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~---------~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
-++++|| |+-+|+|.+..+-.. +...--...++..+|. ..+|++|+.|-..+|||.|......+..|..
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 9999999 999999975432211 1122234578999995 4677888999999999966543322222321
Q ss_pred ccCcc--ccceEEEe-cCC-----------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 320 FAGTK--QQGLHLVN-CSS-----------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 320 ~~~~~--~~~l~~~~-~h~-----------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..-.. -.|+.-|. +|- ..++-+.|+|+|.-|+..-..-.|++||+..+
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~ 305 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNED 305 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence 11000 01222221 121 12567899999855555444558999999754
No 166
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.69 E-value=1.4e-15 Score=147.86 Aligned_cols=224 Identities=13% Similarity=0.163 Sum_probs=167.7
Q ss_pred CCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEe
Q 008363 86 DIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLE 165 (568)
Q Consensus 86 ~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~ 165 (568)
+...+.+.++..|.+ .|.++.|+|... ..+++.+.||+|++-|+.....-..+..
T Consensus 221 ~~d~d~v~~f~~hs~-~Vs~l~F~P~n~---------s~i~ssSyDGtiR~~D~~~~i~e~v~s~--------------- 275 (498)
T KOG4328|consen 221 EKDKDGVYLFTPHSG-PVSGLKFSPANT---------SQIYSSSYDGTIRLQDFEGNISEEVLSL--------------- 275 (498)
T ss_pred CCccCceEEeccCCc-cccceEecCCCh---------hheeeeccCceeeeeeecchhhHHHhhc---------------
Confidence 446678888999999 455999999887 7899999999999999988432211100
Q ss_pred ecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 166 PVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 166 ~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
......+ ..++|+ .+...++.|..=|...+||+++.. .....+.-|...|.+|+++|-.
T Consensus 276 ---------~~d~~~f-s~~d~~--~e~~~vl~~~~~G~f~~iD~R~~~-----s~~~~~~lh~kKI~sv~~NP~~---- 334 (498)
T KOG4328|consen 276 ---------DTDNIWF-SSLDFS--AESRSVLFGDNVGNFNVIDLRTDG-----SEYENLRLHKKKITSVALNPVC---- 334 (498)
T ss_pred ---------Cccceee-eecccc--CCCccEEEeecccceEEEEeecCC-----ccchhhhhhhcccceeecCCCC----
Confidence 1112223 567776 666778888888899999999773 2344455688899999999996
Q ss_pred CCcEEEEEcCCC-EEEEECCCCC--c-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 246 SANVILTAGHGG-LKFWDIRDPF--R-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~--~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
|.+|||+|.|. ++|||+|.-. . |+.....|...|.+..|||++-.|++.+.|..|+|||..-+....
T Consensus 335 -p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~-------- 405 (498)
T KOG4328|consen 335 -PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD-------- 405 (498)
T ss_pred -chheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccC--------
Confidence 69999999998 9999999653 2 344455899999999999999889999999999999984222111
Q ss_pred CccccceEEEecCCC------CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 322 GTKQQGLHLVNCSSF------AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~------~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
.++.++. |.. ......|.|+..+|++|-.-..|-|+|-+.++.
T Consensus 406 ----~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~ 454 (498)
T KOG4328|consen 406 ----EPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQM 454 (498)
T ss_pred ----Cccceee-ccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEE
Confidence 1222222 221 234568999999999999999999999988773
No 167
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.7e-15 Score=137.69 Aligned_cols=221 Identities=14% Similarity=0.101 Sum_probs=157.8
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
.+...+.|...+. +++|.++. .+++|+.||.|+++|+.++...... .|.. ++|
T Consensus 46 ~l~~~~~~~~plL-~c~F~d~~-----------~~~~G~~dg~vr~~Dln~~~~~~ig-th~~~i~ci~~~~~~~~vIsg 112 (323)
T KOG1036|consen 46 SLKLKFKHGAPLL-DCAFADES-----------TIVTGGLDGQVRRYDLNTGNEDQIG-THDEGIRCIEYSYEVGCVISG 112 (323)
T ss_pred hhhhheecCCcee-eeeccCCc-----------eEEEeccCceEEEEEecCCcceeec-cCCCceEEEEeeccCCeEEEc
Confidence 3445567888444 99999865 7999999999999999986543322 2221 789
Q ss_pred CCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 157 TDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 157 ~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
+-|+.|++|+... +..........| +|++-. |+.|++|+.|..|.+||++.... .....-..-.-.++||
T Consensus 113 sWD~~ik~wD~R~~~~~~~~d~~kkV-y~~~v~----g~~LvVg~~~r~v~iyDLRn~~~----~~q~reS~lkyqtR~v 183 (323)
T KOG1036|consen 113 SWDKTIKFWDPRNKVVVGTFDQGKKV-YCMDVS----GNRLVVGTSDRKVLIYDLRNLDE----PFQRRESSLKYQTRCV 183 (323)
T ss_pred ccCccEEEEeccccccccccccCceE-EEEecc----CCEEEEeecCceEEEEEcccccc----hhhhccccceeEEEEE
Confidence 9999999999984 222223344578 888854 78999999999999999986632 1111122335568999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCC---------CCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAP---------KFIYGLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~---------~~i~~l~~sp~~~~l~s~~~dg~I~ 302 (568)
++-|++ .=++.++-+| |.+=.+.... ..-..|..|. -+|++|+|+|-..+|++|+.||.|.
T Consensus 184 ~~~pn~------eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 184 ALVPNG------EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVN 257 (323)
T ss_pred EEecCC------CceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEE
Confidence 999976 5566667666 5554333321 1223444443 2689999999999999999999999
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA 355 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~ 355 (568)
+||+.+ . +.+..+..-...|.+++|+.+|..||+++.
T Consensus 258 ~Wd~~~--------r--------Krl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 258 IWDLFN--------R--------KRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EccCcc--------h--------hhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999943 2 223466666678999999999999999973
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.66 E-value=4.4e-15 Score=136.56 Aligned_cols=199 Identities=15% Similarity=0.253 Sum_probs=152.5
Q ss_pred ceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363 101 KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT 178 (568)
Q Consensus 101 ~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~ 178 (568)
..+.+..|+.-.+ ++|.+++-|-+..|||++++.. +++ .+..|.
T Consensus 151 aPlTSFDWne~dp---------~~igtSSiDTTCTiWdie~~~~~~vkT-------------------------QLIAHD 196 (364)
T KOG0290|consen 151 APLTSFDWNEVDP---------NLIGTSSIDTTCTIWDIETGVSGTVKT-------------------------QLIAHD 196 (364)
T ss_pred CcccccccccCCc---------ceeEeecccCeEEEEEEeeccccceee-------------------------EEEecC
Confidence 4566889988776 8999999999999999998632 111 116899
Q ss_pred CccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 179 QSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 179 ~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
..| +.++|. .. -+.||+.+.||.||+||++.... ...+..-..-..+...++|++.. ++++|+-..|.
T Consensus 197 KEV-~DIaf~--~~s~~~FASvgaDGSvRmFDLR~leH---STIIYE~p~~~~pLlRLswnkqD-----pnymATf~~dS 265 (364)
T KOG0290|consen 197 KEV-YDIAFL--KGSRDVFASVGADGSVRMFDLRSLEH---STIIYEDPSPSTPLLRLSWNKQD-----PNYMATFAMDS 265 (364)
T ss_pred cce-eEEEec--cCccceEEEecCCCcEEEEEeccccc---ceEEecCCCCCCcceeeccCcCC-----chHHhhhhcCC
Confidence 999 999998 33 35899999999999999996522 11221111225678889999987 69999998885
Q ss_pred --EEEEECCCCCcceeeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 258 --LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 258 --v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
|.+.|+|.+..++..+++|.+.|+.++|.|. ...|+++|+|..+-+||+..+..+ . ...++..+. -
T Consensus 266 ~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~------~----~~dPilay~-a 334 (364)
T KOG0290|consen 266 NKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRE------N----GEDPILAYT-A 334 (364)
T ss_pred ceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccccccc------C----CCCchhhhh-c
Confidence 9999999999999999999999999999996 467888899999999999764421 1 113334444 5
Q ss_pred CCCEEEEEEecC-CCEEEEEeC
Q 008363 335 SFAIWSVQVSRL-TGMVAYCSA 355 (568)
Q Consensus 335 ~~~V~~l~~sp~-~~~l~s~s~ 355 (568)
.+.|+.++|++. +.+|+.+..
T Consensus 335 ~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 335 GGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceeeeeeecccCCCEEEEEec
Confidence 678999999976 567777653
No 169
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=9.2e-15 Score=136.32 Aligned_cols=216 Identities=17% Similarity=0.229 Sum_probs=166.0
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.|++.+|+++. ..+|++.....|.||.....+.-.. ..++..|...|
T Consensus 12 pitchAwn~dr----------t~iAv~~~~~evhiy~~~~~~~w~~-----------------------~htls~Hd~~v 58 (361)
T KOG1523|consen 12 PITCHAWNSDR----------TQIAVSPNNHEVHIYSMLGADLWEP-----------------------AHTLSEHDKIV 58 (361)
T ss_pred ceeeeeecCCC----------ceEEeccCCceEEEEEecCCCCcee-----------------------ceehhhhCcce
Confidence 67799999999 7999999999999999877442211 11227889999
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEc-cCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKF-VASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~-~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
++|+|+ |..+.|++++.|..-++|.. ..+.+ ++...+..|+..+++|.|+|.+ +.||+|+... |.
T Consensus 59 -tgvdWa--p~snrIvtcs~drnayVw~~~~~~~W----kptlvLlRiNrAAt~V~WsP~e------nkFAVgSgar~is 125 (361)
T KOG1523|consen 59 -TGVDWA--PKSNRIVTCSHDRNAYVWTQPSGGTW----KPTLVLLRINRAATCVKWSPKE------NKFAVGSGARLIS 125 (361)
T ss_pred -eEEeec--CCCCceeEccCCCCccccccCCCCee----ccceeEEEeccceeeEeecCcC------ceEEeccCccEEE
Confidence 999999 77889999999999999998 55533 7777778889999999999998 9999999988 88
Q ss_pred EEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc--cccC-C-CCCCC--CccCccccceEE
Q 008363 260 FWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK--AAYD-V-PATGK--PFAGTKQQGLHL 330 (568)
Q Consensus 260 lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~--~~~~-~-~~~g~--~~~~~~~~~l~~ 330 (568)
||-+..... ....-..+...|++++|+|++-+|++|+.|+..|+|..-- .+.. . +.-|. ++. +.+..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG----~lm~E 201 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFG----QLMSE 201 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHH----HHHHh
Confidence 887775431 1123346678899999999999999999999999997411 1100 0 00111 111 12234
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+....+.|..+.|+|.|..|+-.+.|+++.+=|....
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 4456678999999999999999999999999988654
No 170
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.66 E-value=2.6e-15 Score=152.61 Aligned_cols=225 Identities=18% Similarity=0.263 Sum_probs=167.4
Q ss_pred cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC-----cEEEEECCCCceeeEEeccCCccCCCCceEE
Q 008363 89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVK 163 (568)
Q Consensus 89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~ 163 (568)
.|.+..++||-. -|++++.+|++ ++||+++... .|+||+..+-...+.|
T Consensus 515 wPEv~KLYGHGy-Ev~~l~~s~~g----------nliASaCKS~~~ehAvI~lw~t~~W~~~~~L--------------- 568 (764)
T KOG1063|consen 515 WPEVHKLYGHGY-EVYALAISPTG----------NLIASACKSSLKEHAVIRLWNTANWLQVQEL--------------- 568 (764)
T ss_pred chhhHHhccCce-eEEEEEecCCC----------CEEeehhhhCCccceEEEEEeccchhhhhee---------------
Confidence 366677889999 55599999999 8999998643 5899999885555454
Q ss_pred EeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC
Q 008363 164 LEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD 243 (568)
Q Consensus 164 ~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 243 (568)
.+|.-.| +.++|+ |||++|++.|.|.++.+|....... ........+.|+.-|.+..|+|++
T Consensus 569 -----------~~HsLTV-T~l~FS--pdg~~LLsvsRDRt~sl~~~~~~~~--~e~~fa~~k~HtRIIWdcsW~pde-- 630 (764)
T KOG1063|consen 569 -----------EGHSLTV-TRLAFS--PDGRYLLSVSRDRTVSLYEVQEDIK--DEFRFACLKAHTRIIWDCSWSPDE-- 630 (764)
T ss_pred -----------cccceEE-EEEEEC--CCCcEEEEeecCceEEeeeeecccc--hhhhhccccccceEEEEcccCccc--
Confidence 8899999 999999 9999999999999999999854321 111233477899999999999998
Q ss_pred CCCCcEEEEEcCCC-EEEEECCCCC-cce--eeeCCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCC
Q 008363 244 SDSANVILTAGHGG-LKFWDIRDPF-RPL--WDIHPAPKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 244 ~~~~~~las~s~d~-v~lwD~~~~~-~~~--~~~~~h~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
.+|||+|.|+ |++|...... ..+ .....+...|+.++|.|- +..++.|-..|.|.||...... ..+
T Consensus 631 ----~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~-~~~ 705 (764)
T KOG1063|consen 631 ----KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH-RQV 705 (764)
T ss_pred ----ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc-ccc
Confidence 8899999999 9999887652 111 133467889999999872 2356777889999999965322 100
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCC----------CEEEEEeCCCeEEEEEcC
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----------GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----------~~l~s~s~Dg~v~iwd~~ 365 (568)
..+... ....+....+|...|+.+.|.|.. ..|++|+.|..++++++.
T Consensus 706 ~~~~~~---~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 706 TVGTFN---LDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cceeee---eccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 111110 011122345677899999999761 357999999999999874
No 171
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.6e-15 Score=145.11 Aligned_cols=196 Identities=18% Similarity=0.178 Sum_probs=148.8
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.++|++++ ..|++|+.||.+|||+++....+... ..|...| -+
T Consensus 149 ~vaf~~~g----------s~latgg~dg~lRv~~~Ps~~t~l~e--------------------------~~~~~eV-~D 191 (398)
T KOG0771|consen 149 VVAFNGDG----------SKLATGGTDGTLRVWEWPSMLTILEE--------------------------IAHHAEV-KD 191 (398)
T ss_pred EEEEcCCC----------CEeeeccccceEEEEecCcchhhhhh--------------------------HhhcCcc-cc
Confidence 69999999 79999999999999999886555443 6788899 99
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcE-EEEE-cCCC-EE
Q 008363 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANV-ILTA-GHGG-LK 259 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~-las~-s~d~-v~ 259 (568)
++|+ |||.+|++-+.| ..+||+++++ .++.... .-......+.|+.++. + +.+ +++. ...+ |+
T Consensus 192 L~FS--~dgk~lasig~d-~~~VW~~~~g------~~~a~~t~~~k~~~~~~cRF~~d~~--~-~~l~laa~~~~~~~v~ 259 (398)
T KOG0771|consen 192 LDFS--PDGKFLASIGAD-SARVWSVNTG------AALARKTPFSKDEMFSSCRFSVDNA--Q-ETLRLAASQFPGGGVR 259 (398)
T ss_pred ceeC--CCCcEEEEecCC-ceEEEEeccC------chhhhcCCcccchhhhhceecccCC--C-ceEEEEEecCCCCcee
Confidence 9999 999999999999 9999999977 3443332 2233466677777651 1 233 3333 3334 88
Q ss_pred EEECCCCCc----ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE-EEecC
Q 008363 260 FWDIRDPFR----PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCS 334 (568)
Q Consensus 260 lwD~~~~~~----~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h 334 (568)
.||+..... .......-...|++++.+++|++++.|+.||.|-|++..++. +++ .-+.|
T Consensus 260 ~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq----------------~~~~vk~aH 323 (398)
T KOG0771|consen 260 LCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ----------------RLQYVKEAH 323 (398)
T ss_pred EEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee----------------eeEeehhhh
Confidence 888765533 222222223468999999999999999999999999995422 222 34579
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
...|+.+.|+|+.+++++.+.|....+..+.
T Consensus 324 ~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 324 LGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred eeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999999999999999999999998874
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=1.7e-15 Score=151.99 Aligned_cols=165 Identities=15% Similarity=0.287 Sum_probs=131.5
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
..| +.+.|.|. |...||+++.||.|+||.+..+... ....+...+.+|...|+++.|+|-.. ++|+++++|.
T Consensus 628 t~v-tDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa-----dvLa~asyd~ 700 (1012)
T KOG1445|consen 628 TLV-TDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA-----DVLAVASYDS 700 (1012)
T ss_pred cee-eecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh-----hHhhhhhccc
Confidence 456 89999988 4479999999999999999866543 34567788999999999999999873 8999999998
Q ss_pred -EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-
Q 008363 258 -LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS- 335 (568)
Q Consensus 258 -v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~- 335 (568)
|++||+++. .....+.+|++.|..++|||||+.+++.+.||+|++|..++... ++..-.+..
T Consensus 701 Ti~lWDl~~~-~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~---------------pv~Eg~gpvg 764 (1012)
T KOG1445|consen 701 TIELWDLANA-KLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ---------------PVYEGKGPVG 764 (1012)
T ss_pred eeeeeehhhh-hhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC---------------ccccCCCCcc
Confidence 999999987 66677889999999999999999999999999999999976431 122211111
Q ss_pred CCEEEEEEecCCCEEEEEeCC----CeEEEEEcCC
Q 008363 336 FAIWSVQVSRLTGMVAYCSAD----GTVHRFQLTA 366 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~D----g~v~iwd~~~ 366 (568)
..-..+.|.-+|++|+..+.| ..|.+||.++
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence 122346788899999888876 4577777643
No 173
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.65 E-value=6.1e-14 Score=139.67 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=134.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~ 201 (568)
.++++++.|+.|++||+.+++.+..+ .++.. + .+++|+ +++..+ ++++.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~--------------------------~~~~~-~-~~l~~~--~dg~~l~~~~~~ 51 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTF--------------------------PVGQR-P-RGITLS--KDGKLLYVCASD 51 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEE--------------------------ECCCC-C-CceEEC--CCCCEEEEEECC
Confidence 57899999999999999988777665 32322 3 678998 788766 66778
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcCCC-EEEEECCCCCcceeeeCCCCCC
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGHGG-LKFWDIRDPFRPLWDIHPAPKF 279 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~d~-v~lwD~~~~~~~~~~~~~h~~~ 279 (568)
++.|++||+.++ +.+..+..+.. +..++|+|++ +.+ ++++.++ |++||+++. ..+..+.. ...
T Consensus 52 ~~~v~~~d~~~~------~~~~~~~~~~~-~~~~~~~~~g------~~l~~~~~~~~~l~~~d~~~~-~~~~~~~~-~~~ 116 (300)
T TIGR03866 52 SDTIQVIDLATG------EVIGTLPSGPD-PELFALHPNG------KILYIANEDDNLVTVIDIETR-KVLAEIPV-GVE 116 (300)
T ss_pred CCeEEEEECCCC------cEEEeccCCCC-ccEEEECCCC------CEEEEEcCCCCeEEEEECCCC-eEEeEeeC-CCC
Confidence 999999999866 55555554443 5678999998 555 4555677 999999876 55555532 334
Q ss_pred eEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-eCCC
Q 008363 280 IYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADG 357 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg 357 (568)
+.+++|+|++.++++++.++ .+.+||... ++.+ ..+. ....+.+++|+|++.+|+++ ..++
T Consensus 117 ~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~--------~~~~--------~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~ 179 (300)
T TIGR03866 117 PEGMAVSPDGKIVVNTSETTNMAHFIDTKT--------YEIV--------DNVL-VDQRPRFAEFTADGKELWVSSEIGG 179 (300)
T ss_pred cceEEECCCCCEEEEEecCCCeEEEEeCCC--------CeEE--------EEEE-cCCCccEEEECCCCCEEEEEcCCCC
Confidence 68899999999999988765 567788843 3221 2222 22345779999999887544 5699
Q ss_pred eEEEEEcCCCeee
Q 008363 358 TVHRFQLTAKAVE 370 (568)
Q Consensus 358 ~v~iwd~~~~~~~ 370 (568)
.|++||+.+++..
T Consensus 180 ~v~i~d~~~~~~~ 192 (300)
T TIGR03866 180 TVSVIDVATRKVI 192 (300)
T ss_pred EEEEEEcCcceee
Confidence 9999999876543
No 174
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=1.2e-14 Score=138.47 Aligned_cols=223 Identities=16% Similarity=0.215 Sum_probs=154.5
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.| ||.++.|+.++ .+||+|+.|..++||++...-..++ ++.|.+ .-
T Consensus 52 ~~~H~G-CiNAlqFS~N~----------~~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~--------~~ 101 (609)
T KOG4227|consen 52 VREHTG-CINALQFSHND----------RFLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV--------ME 101 (609)
T ss_pred hhhhcc-ccceeeeccCC----------eEEeecCCcceeeeechHHHHhhcC-----------CCCcee--------cc
Confidence 468999 88899999998 8999999999999999876211111 001111 01
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~la 251 (568)
..|...| +|++|. ....++.+|..+|+|.+.|+.+. +.+..+ .|. +.|+.+..+|.. +.|+
T Consensus 102 ~~H~SNI-F~L~F~--~~N~~~~SG~~~~~VI~HDiEt~------qsi~V~-~~~~~~~~VY~m~~~P~D------N~~~ 165 (609)
T KOG4227|consen 102 HPHRSNI-FSLEFD--LENRFLYSGERWGTVIKHDIETK------QSIYVA-NENNNRGDVYHMDQHPTD------NTLI 165 (609)
T ss_pred Cccccce-EEEEEc--cCCeeEecCCCcceeEeeecccc------eeeeee-cccCcccceeecccCCCC------ceEE
Confidence 4566889 999998 66789999999999999999977 555555 344 489999999998 8999
Q ss_pred EEcCCC-EEEEECCCCCcceeee--CCCCC--------------------------------------------------
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDI--HPAPK-------------------------------------------------- 278 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~--~~h~~-------------------------------------------------- 278 (568)
+.+.++ |.+||.+....+...+ .....
T Consensus 166 ~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~ 245 (609)
T KOG4227|consen 166 VVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENT 245 (609)
T ss_pred EEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccch
Confidence 999999 9999998652111100 00000
Q ss_pred -------------------------------------------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 279 -------------------------------------------------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 279 -------------------------------------------------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.+.+++|-.| ..+++|+.+-.|++|.+...
T Consensus 246 ~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 246 EWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred hhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCCC
Confidence 1122223222 44777888888899987432
Q ss_pred ccC--CCCCCCC-----ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 310 AYD--VPATGKP-----FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 310 ~~~--~~~~g~~-----~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
... ....|.- ........+..+.||...+..|.|+|...+|++.+-...++||.-
T Consensus 325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 110 0011220 000011356789999999999999999999999999999999965
No 175
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=8.1e-15 Score=133.15 Aligned_cols=162 Identities=19% Similarity=0.250 Sum_probs=120.0
Q ss_pred CccceEEEEccCCCCC--EEEEEeCCCeEEEEEccCCCCC----CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 179 QSIPLTMEWSTSPPHD--YLLAGCHDGTVALWKFVASDSS----IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~--~l~sgs~Dg~I~iwd~~~~~~~----~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
+.+ +|..|... .+. +|++|..+|.|.+||+.++... ...+.......|..+|.++.|.+.- ..=++
T Consensus 151 gsv-mc~~~~~~-c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~------~rGis 222 (323)
T KOG0322|consen 151 GSV-MCQDKDHA-CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC------DRGIS 222 (323)
T ss_pred Cce-eeeecccc-ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh------cCCcC
Confidence 344 56665422 222 5778999999999999875211 1123334455799999999998765 44556
Q ss_pred EcCCC-EEEEECCCCCc--ce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 253 AGHGG-LKFWDIRDPFR--PL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~--~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
|+.+. +..|.+..... ++ ..+.-..-.|..+..-||++.++++|.|+.||+|..++ +++ +
T Consensus 223 gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrt--------l~p--------L 286 (323)
T KOG0322|consen 223 GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRT--------LNP--------L 286 (323)
T ss_pred CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEecc--------CCc--------h
Confidence 66665 88998875421 22 11111234578899999999999999999999999964 444 4
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
..+..|.+.|.+++|+|+..++|++|.|+.|-+|++
T Consensus 287 AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 689999999999999999999999999999999987
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=5.6e-14 Score=130.39 Aligned_cols=195 Identities=15% Similarity=0.234 Sum_probs=147.0
Q ss_pred ccCCCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC---CCceeEE
Q 008363 154 KEGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI---DSRPLLC 224 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~ 224 (568)
+.++.+..+++|+... |......|.+.| ..|.|.+..-|+.+|+++.|+++.||.-....... ......+
T Consensus 29 AtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si-~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~tt 107 (361)
T KOG2445|consen 29 ATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSI-WRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTT 107 (361)
T ss_pred eeccCCCcEEEEeccCCCCceEEeeeEEecCCcE-EEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEE
Confidence 4688999999999432 666778899999 99999866668999999999999999863222111 1234456
Q ss_pred eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-----cceeeeC-------CCCCCeEEEEEcCC---
Q 008363 225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-----RPLWDIH-------PAPKFIYGLDWLPD--- 288 (568)
Q Consensus 225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-----~~~~~~~-------~h~~~i~~l~~sp~--- 288 (568)
+....+.|++|.|.|.. .+-.+|+++.|| ||||+.-... .....+. .+.....|+.|+|.
T Consensus 108 l~DsrssV~DV~FaP~h----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 108 LVDSRSSVTDVKFAPKH----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMH 183 (361)
T ss_pred eecCCcceeEEEecchh----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecccccc
Confidence 66778889999999976 457899999999 9999887652 1111222 35566789999984
Q ss_pred CCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-C---CEEEEEeCCCeE
Q 008363 289 PGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-T---GMVAYCSADGTV 359 (568)
Q Consensus 289 ~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-~---~~l~s~s~Dg~v 359 (568)
..+|+.|+.+ +.++||.... .++. ...+..+.+|..+|+.++|.|+ | .+||+++.|| |
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e-------~~rK-----w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v 250 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNE-------NGRK-----WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-V 250 (361)
T ss_pred CceEEEEcccCCccccceEEEEecC-------Ccce-----eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-E
Confidence 4677777665 4788998743 2322 2456678899999999999998 3 6899999999 9
Q ss_pred EEEEcCC
Q 008363 360 HRFQLTA 366 (568)
Q Consensus 360 ~iwd~~~ 366 (568)
+||.+..
T Consensus 251 ~I~~v~~ 257 (361)
T KOG2445|consen 251 RIFKVKV 257 (361)
T ss_pred EEEEEee
Confidence 9999964
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=157.72 Aligned_cols=226 Identities=16% Similarity=0.314 Sum_probs=164.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+.+|.. .|+|+.|...| .++++|+.|..|+||...+..|+..+
T Consensus 186 LlgH~n-aVyca~fDrtg----------~~Iitgsdd~lvKiwS~et~~~lAs~-------------------------- 228 (1113)
T KOG0644|consen 186 LLGHRN-AVYCAIFDRTG----------RYIITGSDDRLVKIWSMETARCLASC-------------------------- 228 (1113)
T ss_pred HHhhhh-heeeeeecccc----------ceEeecCccceeeeeeccchhhhccC--------------------------
Confidence 468888 67799999999 89999999999999999998888665
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.||.+.| +.++-+ .+..++++++.|..|++|.+..+ .++..+.+|++.|++|+|+|.. +.+
T Consensus 229 rGhs~di-tdlavs--~~n~~iaaaS~D~vIrvWrl~~~------~pvsvLrghtgavtaiafsP~~----------sss 289 (1113)
T KOG0644|consen 229 RGHSGDI-TDLAVS--SNNTMIAAASNDKVIRVWRLPDG------APVSVLRGHTGAVTAIAFSPRA----------SSS 289 (1113)
T ss_pred CCCcccc-chhccc--hhhhhhhhcccCceEEEEecCCC------chHHHHhccccceeeeccCccc----------cCC
Confidence 8999999 999866 67779999999999999999977 8899999999999999999973 567
Q ss_pred CCC-EEEEECC-CCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeC-------------------------------
Q 008363 255 HGG-LKFWDIR-DPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFD------------------------------- 297 (568)
Q Consensus 255 ~d~-v~lwD~~-~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------------------------------- 297 (568)
.|+ +++||.+ ... ++.. + ....-+.++.|...+..+++++.
T Consensus 290 ~dgt~~~wd~r~~~~~y~prp~~-~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 290 DDGTCRIWDARLEPRIYVPRPLK-F-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI 367 (1113)
T ss_pred CCCceEeccccccccccCCCCCC-c-ccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence 777 9999998 110 1110 0 00112223333333322333332
Q ss_pred ------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeee
Q 008363 298 ------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 298 ------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+-.+.+|++ .+|.+ ++.+.+|...+..+.++|.. ....+++.||...|||+..+.-+
T Consensus 368 ~~~ar~~~~~~vwnl--------~~g~l--------~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi 431 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNL--------YTGQL--------LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI 431 (1113)
T ss_pred ceeeeeeeEeeeeec--------ccchh--------hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcc
Confidence 334555655 23433 36778899999999999986 56678999999999999877655
Q ss_pred ccCCCCCcceeeeecccCCCCceEE
Q 008363 371 KDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 371 ~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
+.+... ......+.|+.+|..+++
T Consensus 432 k~y~~g-h~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 432 KHYFIG-HGKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred eeeecc-cceeeccccCCCCceEec
Confidence 544322 223344577777776655
No 178
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.60 E-value=1.3e-12 Score=134.99 Aligned_cols=235 Identities=21% Similarity=0.339 Sum_probs=181.9
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccC----------C-------cc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSS----------M-------KE 155 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~----------~-------~~ 155 (568)
....|.. .+..+.|.+.+ ..++.++.|+.+.+|+...+. ....+.... . ..
T Consensus 60 ~~~~~~~-~i~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 60 LLRGHED-SITSIAFSPDG----------ELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeeccc-eEEEEEECCCC----------cEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 3456777 55599999999 688888899999999998865 444443311 0 11
Q ss_pred -CCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 156 -GTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 156 -~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
...+..+.+|.... .......|...| ..++|+ +++..+++++. |+.+++|++... ..+..+.+|..
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 199 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIRTLEGHSESV-TSLAFS--PDGKLLASGSSLDGTIKLWDLRTG------KPLSTLAGHTD 199 (466)
T ss_pred cCCCCccEEEEEecCCCeEEEEEecCcccE-EEEEEC--CCCCEEEecCCCCCceEEEEcCCC------ceEEeeccCCC
Confidence 23366777777653 445567899998 899999 78888888886 999999999864 67888888999
Q ss_pred CeeEEEEccCCCCCCCCc-EEEEEcCCC-EEEEECCCCCccee-eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 231 PIRAVSWAPAESDSDSAN-VILTAGHGG-LKFWDIRDPFRPLW-DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~-~las~s~d~-v~lwD~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
.|.+++|+|++ . ++++++.|+ |++||.... ..+. .+..|.... ...|+|++.++++++.|+.+++|+++
T Consensus 200 ~v~~~~~~~~~------~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~ 271 (466)
T COG2319 200 PVSSLAFSPDG------GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR 271 (466)
T ss_pred ceEEEEEcCCc------ceEEEEecCCCcEEEEECCCC-cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence 99999999887 5 666658888 999998855 5555 677887775 44899999888899999999999996
Q ss_pred ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
... ..+..+.+|...|.++.|+|++..+++++.|+.+.+|++.+.....
T Consensus 272 ~~~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 272 SSS---------------SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred CCC---------------cEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE
Confidence 532 1123336788999999999988888889999999999987665443
No 179
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=3.1e-14 Score=132.39 Aligned_cols=186 Identities=17% Similarity=0.256 Sum_probs=130.9
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
.|+.|+ +-|.+||+|+.||.|.|||+.+. .+.+.+.+|..+|.+++|+++| ++|+|+|.|. |.+|
T Consensus 27 ~~~~Fs--~~G~~lAvGc~nG~vvI~D~~T~------~iar~lsaH~~pi~sl~WS~dg------r~LltsS~D~si~lw 92 (405)
T KOG1273|consen 27 ECCQFS--RWGDYLAVGCANGRVVIYDFDTF------RIARMLSAHVRPITSLCWSRDG------RKLLTSSRDWSIKLW 92 (405)
T ss_pred ceEEec--cCcceeeeeccCCcEEEEEcccc------chhhhhhccccceeEEEecCCC------CEeeeecCCceeEEE
Confidence 789999 88999999999999999999977 6778899999999999999999 8999999998 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEE-ec-CCCCE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NC-SSFAI 338 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~-h~~~V 338 (568)
|+..+ .++..+. ...+|+.+.|+|..+..+.+ -.+..-.+-++.... ... +..- .+ -...-
T Consensus 93 Dl~~g-s~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~------h~~--------Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 93 DLLKG-SPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK------HSV--------LPKDDDGDLNSSA 156 (405)
T ss_pred eccCC-CceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc------eee--------ccCCCcccccccc
Confidence 99998 6776663 47889999999965444433 234445555553211 000 0000 00 01111
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
.+..|.+.|++|++|..-|.+.+++..+.++.....-.....+.-..++..+..+.+++.
T Consensus 157 s~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts 216 (405)
T KOG1273|consen 157 SHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS 216 (405)
T ss_pred ccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC
Confidence 233688999999999999999999998876543321111122222235566666666543
No 180
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.59 E-value=4e-14 Score=139.98 Aligned_cols=195 Identities=21% Similarity=0.258 Sum_probs=141.9
Q ss_pred CCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.++.++..+....+.......|.+.+ .+-.|+ ++|.-|++++.||.|++|.-.. -...++.....+|+|+
T Consensus 82 s~DGkf~il~k~~rVE~sv~AH~~A~-~~gRW~--~dGtgLlt~GEDG~iKiWSrsG-------MLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 82 SNDGRFVILNKSARVERSISAHAAAI-SSGRWS--PDGAGLLTAGEDGVIKIWSRSG-------MLRSTVVQNEESIRCA 151 (737)
T ss_pred cCCceEEEecccchhhhhhhhhhhhh-hhcccC--CCCceeeeecCCceEEEEeccc-------hHHHHHhhcCceeEEE
Confidence 34444444444444455567899999 999999 9999999999999999999552 2333444557789999
Q ss_pred EEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 236 SWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
+|.|+. +-++-|..+.+.|=-+... ..+.....|.+-|.++.|+|....|++||+|-..++||-
T Consensus 152 ~W~p~S------~~vl~c~g~h~~IKpL~~n-~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~--------- 215 (737)
T KOG1524|consen 152 RWAPNS------NSIVFCQGGHISIKPLAAN-SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA--------- 215 (737)
T ss_pred EECCCC------CceEEecCCeEEEeecccc-cceeEEeccCcEEEEeecCccccceeecCCceeEEeecc---------
Confidence 999998 4555555555666666544 445567799999999999999999999999999999998
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.|.. +..-..|..+|++++|.|+ ..++.+|.. +++ + +..+...+...++++||..++.
T Consensus 216 ~G~~--------Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R--------~----~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 216 QGAN--------LFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR--------F----SSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred cCcc--------cccCChhccceeeeeeccc-cceeeeeee-eee--------e----cCCCccceEEEEEcCCCceeec
Confidence 3543 3566779999999999998 555555532 333 2 2334555556678888877766
Q ss_pred ccc
Q 008363 396 NTP 398 (568)
Q Consensus 396 ~~~ 398 (568)
++.
T Consensus 274 gt~ 276 (737)
T KOG1524|consen 274 GTS 276 (737)
T ss_pred ccc
Confidence 543
No 181
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.58 E-value=1.3e-14 Score=139.17 Aligned_cols=164 Identities=19% Similarity=0.306 Sum_probs=136.3
Q ss_pred CccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCC---CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 179 QSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSI---DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.++ +++.|. +++. .|++|+.|..|+||-+....... ....+..+..|...|+++.|+|+| .+||||+
T Consensus 14 ~pv-~s~dfq--~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g------elLASg~ 84 (434)
T KOG1009|consen 14 EPV-YSVDFQ--KNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG------ELLASGG 84 (434)
T ss_pred Cce-EEEEec--cCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc------CeeeecC
Confidence 455 889988 4444 99999999999999998665433 334566788999999999999999 9999999
Q ss_pred CCC-EEEEECC--------C-----C-C-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363 255 HGG-LKFWDIR--------D-----P-F-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 255 ~d~-v~lwD~~--------~-----~-~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
+++ |.+|-.. + . . .....+.+|...|+.++|+|++.++++++.|+.+++||+. .|+
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~--------~G~ 156 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH--------AGQ 156 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec--------cce
Confidence 999 9999765 2 1 0 2235667899999999999999999999999999999994 475
Q ss_pred CccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 319 PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.+ ..+..|..-|..++|.|.++++++-+.|...+.+.+...
T Consensus 157 l~--------~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 157 LL--------AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred eE--------eeccccccccceeecchhhhhhhhhccCcccceeeeeee
Confidence 54 588899999999999999999999999997777776543
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.4e-14 Score=132.30 Aligned_cols=149 Identities=15% Similarity=0.215 Sum_probs=121.7
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-cee
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-PLW 271 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-~~~ 271 (568)
..+|++...|+|++||..++ +.+..|++|...++.+.|.... +++.+.+|+.|| |++||+|...+ ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg------~~l~~fk~~~~~~N~vrf~~~d----s~h~v~s~ssDG~Vr~wD~Rs~~e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG------QLLEEFKGPPATTNGVRFISCD----SPHGVISCSSDGTVRLWDIRSQAESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccch------hhhheecCCCCcccceEEecCC----CCCeeEEeccCCeEEEEEeecchhhhhe
Confidence 47999999999999999976 7889999999999999998864 468999999999 99999998743 334
Q ss_pred eeCCCC-CCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEec
Q 008363 272 DIHPAP-KFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSR 345 (568)
Q Consensus 272 ~~~~h~-~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp 345 (568)
....|+ .+..+++..-.++.+++|.. +-.|.+||+|+.. +.+. ....|..-|++|+|+|
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q---------------q~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ---------------QLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEecccc---------------chhhhhhhhccCcceeEEecC
Confidence 455555 35577877767788888754 7789999998744 2223 4467999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCC
Q 008363 346 LT-GMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 346 ~~-~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.. .+|++||.||.|.+||+...
T Consensus 176 ~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 176 SDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred CCCCeEEeecccceEEeeecCCC
Confidence 85 89999999999999999644
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.56 E-value=4.8e-14 Score=139.46 Aligned_cols=183 Identities=16% Similarity=0.290 Sum_probs=138.0
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.+|.+.+. +-+|+|+| .-|++++.||.|++|.-... ...++ .
T Consensus 101 ~AH~~A~~-~gRW~~dG----------tgLlt~GEDG~iKiWSrsGM-LRStl--------------------------~ 142 (737)
T KOG1524|consen 101 SAHAAAIS-SGRWSPDG----------AGLLTAGEDGVIKIWSRSGM-LRSTV--------------------------V 142 (737)
T ss_pred hhhhhhhh-hcccCCCC----------ceeeeecCCceEEEEeccch-HHHHH--------------------------h
Confidence 37888555 99999999 68999999999999986651 11111 3
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
....+| +|++|. |+.+.++-+- .+.+.|=.+... ..+..+++|.+-|.++.|++.. ++++||++
T Consensus 143 Q~~~~v-~c~~W~--p~S~~vl~c~-g~h~~IKpL~~n------~k~i~WkAHDGiiL~~~W~~~s------~lI~sgGE 206 (737)
T KOG1524|consen 143 QNEESI-RCARWA--PNSNSIVFCQ-GGHISIKPLAAN------SKIIRWRAHDGLVLSLSWSTQS------NIIASGGE 206 (737)
T ss_pred hcCcee-EEEEEC--CCCCceEEec-CCeEEEeecccc------cceeEEeccCcEEEEeecCccc------cceeecCC
Confidence 445677 999999 5554444433 356666666544 4556788999999999999998 89999999
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
|- .++||-.. .+++.-..|..+|++++|.|+ ..++.++. +++|+= ...
T Consensus 207 D~kfKvWD~~G--~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~---------------------------~p~ 255 (737)
T KOG1524|consen 207 DFRFKIWDAQG--ANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFS---------------------------SPR 255 (737)
T ss_pred ceeEEeecccC--cccccCChhccceeeeeeccc-cceeeeee-eeeeec---------------------------CCC
Confidence 98 99999874 678777889999999999999 54554443 334311 124
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
.+.|..++||+||..++.|+..|.+.+=.
T Consensus 256 ~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 256 VGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred ccceEEEEEcCCCceeeccccCceEEEee
Confidence 56789999999999999999999876643
No 184
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=3e-12 Score=121.92 Aligned_cols=202 Identities=19% Similarity=0.338 Sum_probs=140.5
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe--C
Q 008363 124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC--H 201 (568)
Q Consensus 124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs--~ 201 (568)
.|+++-.+ .|+|||+.+.+.+.++... ..+...+ ++++|++.+.+||--+ .
T Consensus 99 RLvV~Lee-~IyIydI~~MklLhTI~t~-----------------------~~n~~gl---~AlS~n~~n~ylAyp~s~t 151 (391)
T KOG2110|consen 99 RLVVCLEE-SIYIYDIKDMKLLHTIETT-----------------------PPNPKGL---CALSPNNANCYLAYPGSTT 151 (391)
T ss_pred eEEEEEcc-cEEEEecccceeehhhhcc-----------------------CCCccce---EeeccCCCCceEEecCCCC
Confidence 46666654 4999999998888776211 1233333 4455557777877533 4
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECCCCCcceeeeCCC--C
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIRDPFRPLWDIHPA--P 277 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~~~~~~~~~~~~h--~ 277 (568)
.|.|.|||+.+- +++..+.+|.+.+.+++|+++| .+|||+|+.| |||+.+.++ ..+..|+.- .
T Consensus 152 ~GdV~l~d~~nl------~~v~~I~aH~~~lAalafs~~G------~llATASeKGTVIRVf~v~~G-~kl~eFRRG~~~ 218 (391)
T KOG2110|consen 152 SGDVVLFDTINL------QPVNTINAHKGPLAALAFSPDG------TLLATASEKGTVIRVFSVPEG-QKLYEFRRGTYP 218 (391)
T ss_pred CceEEEEEcccc------eeeeEEEecCCceeEEEECCCC------CEEEEeccCceEEEEEEcCCc-cEeeeeeCCcee
Confidence 689999999865 8899999999999999999999 8999999987 999999988 666666522 3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC---CCCCccCcc------------------ccceEEEecCCC
Q 008363 278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA---TGKPFAGTK------------------QQGLHLVNCSSF 336 (568)
Q Consensus 278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~---~g~~~~~~~------------------~~~l~~~~~h~~ 336 (568)
..|++|+|+|++.+|++.+..++|++|.+.....+.+. .+....+.- ...+.......+
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s 298 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPES 298 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCC
Confidence 45789999999999999999999999999776543222 111110000 000111111111
Q ss_pred CE-EEEEEe--cCCCEEEEEeCCCeEEEEEcC
Q 008363 337 AI-WSVQVS--RLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 337 ~V-~~l~~s--p~~~~l~s~s~Dg~v~iwd~~ 365 (568)
.. ..+.+. +...++..++.||.++.|.+.
T Consensus 299 ~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~ 330 (391)
T KOG2110|consen 299 GRKNICSLSSIQKIPRVLVASYDGHLYSYRLP 330 (391)
T ss_pred CccceEEeeccCCCCEEEEEEcCCeEEEEEcC
Confidence 21 222333 456889999999999999884
No 185
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=6.6e-13 Score=133.21 Aligned_cols=202 Identities=16% Similarity=0.204 Sum_probs=143.9
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
|...+.||++.| .+|.-. +.|.+|++|+.||+|+||.+.++ .|++++.- .+.|.||+|+|.+ .-.+
T Consensus 392 ~~lvyrGHtg~V-r~iSvd--p~G~wlasGsdDGtvriWEi~Tg------Rcvr~~~~-d~~I~~vaw~P~~----~~~v 457 (733)
T KOG0650|consen 392 CALVYRGHTGLV-RSISVD--PSGEWLASGSDDGTVRIWEIATG------RCVRTVQF-DSEIRSVAWNPLS----DLCV 457 (733)
T ss_pred eeeeEeccCCeE-EEEEec--CCcceeeecCCCCcEEEEEeecc------eEEEEEee-cceeEEEEecCCC----Ccee
Confidence 556678999999 999977 78999999999999999999988 88887743 5679999999987 2334
Q ss_pred EEEEcCCCEEEEECCCC------------------------------------CcceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363 250 ILTAGHGGLKFWDIRDP------------------------------------FRPLWDIHPAPKFIYGLDWLPDPGCVI 293 (568)
Q Consensus 250 las~s~d~v~lwD~~~~------------------------------------~~~~~~~~~h~~~i~~l~~sp~~~~l~ 293 (568)
||.+-...+.|-+..-+ ..-+...-.|...|..|.|+..|.||+
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYla 537 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLA 537 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEE
Confidence 44443333333332111 011122235778899999999999999
Q ss_pred EEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 294 LSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 294 s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+..- ...|.|+++.+.. . ...|....+.|.++.|+|...+|++++ -..|+|||+....+.
T Consensus 538 tV~~~~~~~~VliHQLSK~~--------s--------Q~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRK--------S--------QSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELV 600 (733)
T ss_pred EeccCCCcceEEEEeccccc--------c--------cCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHH
Confidence 9744 4578999996522 0 123444567789999999998888887 458999999776554
Q ss_pred ccCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363 371 KDHSRNRPMHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 371 ~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
+. .......+...++.+.|..|+++++...+-
T Consensus 601 Kk-L~tg~kwiS~msihp~GDnli~gs~d~k~~ 632 (733)
T KOG0650|consen 601 KK-LLTGSKWISSMSIHPNGDNLILGSYDKKMC 632 (733)
T ss_pred HH-HhcCCeeeeeeeecCCCCeEEEecCCCeeE
Confidence 43 122223344447888889999988777663
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=2.6e-13 Score=122.06 Aligned_cols=217 Identities=19% Similarity=0.243 Sum_probs=142.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
|++-+|+|.+ ++|++|..+|.|.+..+...... +...+....+.+ ..+|.+++
T Consensus 13 vf~qa~sp~~----------~~l~agn~~G~iav~sl~sl~s~---------sa~~~gk~~iv~-------eqahdgpi- 65 (325)
T KOG0649|consen 13 VFAQAISPSK----------QYLFAGNLFGDIAVLSLKSLDSG---------SAEPPGKLKIVP-------EQAHDGPI- 65 (325)
T ss_pred HHHHhhCCcc----------eEEEEecCCCeEEEEEehhhhcc---------ccCCCCCcceee-------ccccCCCe-
Confidence 3477899999 89999999999999998762111 001111111111 27899999
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCC-----CCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SAD-----TLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h-----~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+.++|. + ++|++|+ ||.|+-|..+....+...+.+... .-| -..|+++-..|.. +-++.++.
T Consensus 66 y~~~f~---d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e------nSi~~AgG 134 (325)
T KOG0649|consen 66 YYLAFH---D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE------NSILFAGG 134 (325)
T ss_pred eeeeee---h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC------CcEEEecC
Confidence 999988 3 5788887 599999987644322111221111 112 2358899999887 55666667
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEec
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNC 333 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~ 333 (568)
|+ ++-||+.++ +..+++++|++.|.++.--.....|++|++||++|+||+++ ++.+...+ ++.-..+..
T Consensus 135 D~~~y~~dlE~G-~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt--------~k~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 135 DGVIYQVDLEDG-RIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKT--------QKHVSMIEPYKNPNLLRP 205 (325)
T ss_pred CeEEEEEEecCC-EEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccc--------cceeEEeccccChhhcCc
Confidence 77 999999998 88889999999999998855556699999999999999954 44431000 000001122
Q ss_pred CCC-CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 334 SSF-AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 334 h~~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
|.+ .|-+++. +..+|+.|+ .-.+.+|.+...+.
T Consensus 206 ~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 206 DWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred ccCceeEEEec--cCceEEecC-CCceeEEeccCCCc
Confidence 222 3444444 455666555 56799999976543
No 187
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=5.1e-13 Score=141.80 Aligned_cols=226 Identities=13% Similarity=0.177 Sum_probs=163.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------------ccCCCCceEE
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------------KEGTDPRFVK 163 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------------~~~~~~~~v~ 163 (568)
...+.|+|-. ..++++.+.-.|+|||.+.++++..+..... ..++.++.|+
T Consensus 1067 pk~~~~hpf~----------p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIR 1136 (1387)
T KOG1517|consen 1067 PKTLKFHPFE----------PQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIR 1136 (1387)
T ss_pred CceeeecCCC----------ceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEE
Confidence 3357888877 5888888888999999999888776644332 5688999999
Q ss_pred Eeecceec--------------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCC
Q 008363 164 LEPVFRCS--------------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SAD 228 (568)
Q Consensus 164 ~~~~~~~~--------------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h 228 (568)
+|..+... ....+-.+. +.-++|. ....+|++++.-..|+|||.... ..+..+ .+-
T Consensus 1137 Iwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~-~~v~dWq--Q~~G~Ll~tGd~r~IRIWDa~~E------~~~~diP~~s 1207 (1387)
T KOG1517|consen 1137 IWKDYADKWKKPELVTAWSSLSDQLPGARGT-GLVVDWQ--QQSGHLLVTGDVRSIRIWDAHKE------QVVADIPYGS 1207 (1387)
T ss_pred EecccccccCCceeEEeeccccccCccCCCC-Ceeeehh--hhCCeEEecCCeeEEEEEecccc------eeEeecccCC
Confidence 99876521 011111122 2457888 45557777777889999999865 444433 234
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc--ceeeeCCCCCC--eEEEEEcCCCCE-EEEEeCCCcEE
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR--PLWDIHPAPKF--IYGLDWLPDPGC-VILSFDDGAMR 302 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~--~~~~~~~h~~~--i~~l~~sp~~~~-l~s~~~dg~I~ 302 (568)
+..|+++.-+-.. .++|+.|-.|| |++||.|.... .+...+.|... |..+.+.+.|-. |++|+.||.|+
T Consensus 1208 ~t~vTaLS~~~~~-----gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~ 1282 (1387)
T KOG1517|consen 1208 STLVTALSADLVH-----GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQ 1282 (1387)
T ss_pred CccceeecccccC-----CceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEE
Confidence 4557777544333 38999999999 99999997653 45667788877 999999987655 99999999999
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCC--C-CEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS--F-AIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~--~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+||+|.... ....++..|. + .++++..|+....||+|+. +.|+||++...
T Consensus 1283 ~~DlR~~~~--------------e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1283 LLDLRMSSK--------------ETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred EEecccCcc--------------cccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 999986320 1112333343 3 5899999999999999998 99999999654
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2.7e-13 Score=143.87 Aligned_cols=222 Identities=14% Similarity=0.127 Sum_probs=158.1
Q ss_pred cEEEEEeCCCcEEEEECCC-----CceeeEEeccCC---------------------ccCCCCceEEEeecce---eccc
Q 008363 123 GYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSM---------------------KEGTDPRFVKLEPVFR---CSML 173 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~---------------------~~~~~~~~v~~~~~~~---~~~~ 173 (568)
.+|++|+.||.|+||+-.. .+.+..+.+-.. ..+++-++|++|+... +...
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~di 1203 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADI 1203 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeec
Confidence 6899999999999997432 222222222111 3345588999999877 3334
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC--eeEEEEccCCCCCCCCcEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP--IRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~~~~la 251 (568)
..+....| +++.-+. ..|+.|++|..||.|++||.+.... ...+..++.|+.. |..+.+.+.|- .-|+
T Consensus 1204 P~~s~t~v-TaLS~~~-~~gn~i~AGfaDGsvRvyD~R~a~~---ds~v~~~R~h~~~~~Iv~~slq~~G~-----~elv 1273 (1387)
T KOG1517|consen 1204 PYGSSTLV-TALSADL-VHGNIIAAGFADGSVRVYDRRMAPP---DSLVCVYREHNDVEPIVHLSLQRQGL-----GELV 1273 (1387)
T ss_pred ccCCCccc-eeecccc-cCCceEEEeecCCceEEeecccCCc---cccceeecccCCcccceeEEeecCCC-----ccee
Confidence 44555555 7776432 2478999999999999999986532 2466788899988 99999999872 3599
Q ss_pred EEcCCC-EEEEECCCCC-cceeeeCCCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 252 TAGHGG-LKFWDIRDPF-RPLWDIHPAP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~-~~~~~~~~h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
+|+.+| |++||+|... .....+..|. +.++++..+++...|++|+. +.|+||++ .|+.+...+..
T Consensus 1274 Sgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~---------~G~~l~~~k~n 1343 (1387)
T KOG1517|consen 1274 SGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSL---------SGEQLNIIKYN 1343 (1387)
T ss_pred eeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEec---------ChhhhcccccC
Confidence 999999 9999999842 2223333332 35899999999999999988 99999998 35444211111
Q ss_pred ceEEEe-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 327 GLHLVN-CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 327 ~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+ .|. ...+.+.|++|||.--+||+|+.|.+|.||....
T Consensus 1344 ~--~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1344 P--GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred c--ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 0 111 1235679999999999999999999999998754
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.55 E-value=4.2e-12 Score=131.28 Aligned_cols=210 Identities=19% Similarity=0.379 Sum_probs=163.1
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecc
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVF 168 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~ 168 (568)
........|.. .+..++|+|++ .++++++. |+.+++|++..+..+..+
T Consensus 146 ~~~~~~~~~~~-~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 194 (466)
T COG2319 146 KLIRTLEGHSE-SVTSLAFSPDG----------KLLASGSSLDGTIKLWDLRTGKPLSTL-------------------- 194 (466)
T ss_pred eEEEEEecCcc-cEEEEEECCCC----------CEEEecCCCCCceEEEEcCCCceEEee--------------------
Confidence 34455677888 55599999999 68888885 999999999986666555
Q ss_pred eecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCC
Q 008363 169 RCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 169 ~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~ 246 (568)
.+|...| .+++|+ |++. .+++++.|+.|++||...+ ..+. .+.+|...+ ...|++++
T Consensus 195 ------~~~~~~v-~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~-~~~~~~~~----- 253 (466)
T COG2319 195 ------AGHTDPV-SSLAFS--PDGGLLIASGSSDGTIRLWDLSTG------KLLRSTLSGHSDSV-VSSFSPDG----- 253 (466)
T ss_pred ------ccCCCce-EEEEEc--CCcceEEEEecCCCcEEEEECCCC------cEEeeecCCCCcce-eEeECCCC-----
Confidence 6688888 999999 7777 5555599999999987744 5555 688888875 44899997
Q ss_pred CcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.++++++.|+ +++||++.....+..+..|...+.++.|+|++..+++++.|+.+.+||... +...
T Consensus 254 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~--------~~~~----- 319 (466)
T COG2319 254 -SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLET--------GKLL----- 319 (466)
T ss_pred -CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCC--------CceE-----
Confidence 7899999999 999999977443444467889999999999999999988899999998854 2211
Q ss_pred cceEEE--ecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCCCe
Q 008363 326 QGLHLV--NCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTAKA 368 (568)
Q Consensus 326 ~~l~~~--~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~~~ 368 (568)
... ..|...|..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 320 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 320 ---SSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ---EEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 222 3677789999994332455555 688999999997665
No 190
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.54 E-value=4.6e-13 Score=135.59 Aligned_cols=235 Identities=17% Similarity=0.242 Sum_probs=160.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
+....+|.+ .|++|+|+.+| ..+|+|+.|..|.||+-.-...++ +.|.. ++++
T Consensus 46 lqtLKgHKD-tVycVAys~dG----------krFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCs 112 (1081)
T KOG1538|consen 46 LQPLKGHKD-TVYCVAYAKDG----------KRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCS 112 (1081)
T ss_pred ccccccccc-eEEEEEEccCC----------ceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcc
Confidence 344679999 66799999999 899999999999999876522221 12221 1111
Q ss_pred CCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 158 DPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 158 ~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
.. -+.+|....-..........+ .+.+|. .||++|+.|-.||+|.|-+-... ....+..-.+.+++|.+|+|
T Consensus 113 Ls-dFglWS~~qK~V~K~kss~R~-~~CsWt--nDGqylalG~~nGTIsiRNk~gE----ek~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 113 LS-DFGLWSPEQKSVSKHKSSSRI-ICCSWT--NDGQYLALGMFNGTISIRNKNGE----EKVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred hh-hccccChhhhhHHhhhhheeE-EEeeec--CCCcEEEEeccCceEEeecCCCC----cceEEeCCCCCCCCceEEEe
Confidence 11 112222221111112223344 788998 99999999999999999865432 11233334467889999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
+|.. .......++....+. +.++.+... .+..-..-.-...|+.+.|+|.+++.||.|+.+.+|-..
T Consensus 185 ~p~s-g~G~~di~aV~DW~qTLSFy~LsG~--~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~--------- 252 (1081)
T KOG1538|consen 185 NPSS-GEGRNDILAVADWGQTLSFYQLSGK--QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD--------- 252 (1081)
T ss_pred cCCC-CCCccceEEEEeccceeEEEEecce--eecccccCCCCchhheeccCCcEEEEccCCCceEEEeec---------
Confidence 9985 233446777777776 888877743 221111112234689999999999999999999999762
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
|- .+.++......||.++..|++++++.|+.||+|-.|++-..
T Consensus 253 Gv--------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 253 GV--------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred Ce--------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHh
Confidence 32 23455556678999999999999999999999999998543
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=3.2e-14 Score=141.03 Aligned_cols=173 Identities=16% Similarity=0.200 Sum_probs=135.9
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+.||++.| .|++|+ .+|.+|++|+.|-.+.|||.-.. ++++. -.+|...|.++.|-|.. +..+++
T Consensus 45 eL~GH~GCV-N~LeWn--~dG~lL~SGSDD~r~ivWd~~~~------KllhsI~TgHtaNIFsvKFvP~t----nnriv~ 111 (758)
T KOG1310|consen 45 ELTGHTGCV-NCLEWN--ADGELLASGSDDTRLIVWDPFEY------KLLHSISTGHTANIFSVKFVPYT----NNRIVL 111 (758)
T ss_pred hhcccccee-cceeec--CCCCEEeecCCcceEEeecchhc------ceeeeeecccccceeEEeeeccC----CCeEEE
Confidence 448999999 999999 99999999999999999998755 55554 46899999999999987 567899
Q ss_pred EEcCCC-EEEEECCCC---------CcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363 252 TAGHGG-LKFWDIRDP---------FRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~---------~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
||..|. |+++|+... ..+...+..|...|..|+-.|++ ..+.++++||+|+-||+|....-.|..+-+
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~- 190 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCP- 190 (758)
T ss_pred eccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcccccc-
Confidence 999999 999999852 24445566788899999999998 788899999999999998743211111111
Q ss_pred cCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 321 AGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
..+..+...--...++..+|.. .+|++|+.|-..++||.
T Consensus 191 -----~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 191 -----SILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred -----HHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 1122222223456789999985 88999999999999995
No 192
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.3e-13 Score=135.87 Aligned_cols=266 Identities=13% Similarity=0.161 Sum_probs=174.4
Q ss_pred cEEEEEeCCCcEEEE--ECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe
Q 008363 123 GYLAVLLGNGSLEVW--EVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC 200 (568)
Q Consensus 123 ~~las~s~dg~V~iw--d~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs 200 (568)
.++++...+....+| ++........+. ..+...+.+.+-|.+. .++..|...| ..++|. +....|++|+
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~d---d~~~~k~a~~k~w~ik---~tl~s~~d~i-r~l~~~--~sep~lit~s 313 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFD---DLSDLKKAFTKKWNIK---FTLRSHDDCI-RALAFH--PSEPVLITAS 313 (577)
T ss_pred CccccCchHHHHhhcccchhccccccccc---chhhhhhhhheeccee---eeeecchhhh-hhhhcC--CCCCeEEEec
Confidence 567777778888888 544321111110 0111111122223221 1447788888 999988 5566999999
Q ss_pred CCCeEEEEEccCCCC--CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC------C---c
Q 008363 201 HDGTVALWKFVASDS--SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP------F---R 268 (568)
Q Consensus 201 ~Dg~I~iwd~~~~~~--~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~------~---~ 268 (568)
.||+|.+|++..... ....+++.+|.+|.++|.|+++.+.+ ..+.+|+.|+ |+.|++... . .
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~------~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~v 387 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG------EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSV 387 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc------eEEEeeccCceeeeeccCCCCCcccccCcch
Confidence 999999999943211 23567899999999999999999999 8999999999 999955421 1 2
Q ss_pred ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc---CCCC-CCCCcc--Ccc------------------
Q 008363 269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY---DVPA-TGKPFA--GTK------------------ 324 (568)
Q Consensus 269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~---~~~~-~g~~~~--~~~------------------ 324 (568)
....+.||.+.|+.+++|+....|++++.||+|++|+...... ..+. .|-++- .+.
T Consensus 388 l~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~ 467 (577)
T KOG0642|consen 388 LSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSID 467 (577)
T ss_pred hccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccch
Confidence 2356779999999999999999999999999999998744221 0000 010000 000
Q ss_pred ----ccceEEEecC-------CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce
Q 008363 325 ----QQGLHLVNCS-------SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI 393 (568)
Q Consensus 325 ----~~~l~~~~~h-------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i 393 (568)
.+.+..+... ...+.-+.++|...+.+++..|+.|+++|..++........+. ..+.+-++.+.+-.+
T Consensus 468 ~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~-~svtslai~~ng~~l 546 (577)
T KOG0642|consen 468 DMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHK-DSVTSLAIDPNGPYL 546 (577)
T ss_pred hhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeecc-ceecceeecCCCceE
Confidence 0011111111 1245678899999999999999999999998887765533222 233444566666667
Q ss_pred EEcccCCCCCc
Q 008363 394 TVNTPLDNTPV 404 (568)
Q Consensus 394 ~~~~~~~~~~~ 404 (568)
.+++....+.+
T Consensus 547 ~s~s~d~sv~l 557 (577)
T KOG0642|consen 547 MSGSHDGSVRL 557 (577)
T ss_pred EeecCCceeeh
Confidence 66666655533
No 193
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=3.3e-13 Score=133.81 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=126.6
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------------CCCceeEEeeCCCCCeeEEE
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS----------------------IDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~----------------------~~~~~~~~~~~h~~~V~~v~ 236 (568)
..| +|+.|-|..+ ..++++..+|.+.++|..-.... ....++..+.--.+.|+.++
T Consensus 220 tsv-T~ikWvpg~~-~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~ 297 (636)
T KOG2394|consen 220 SSV-TCIKWVPGSD-SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA 297 (636)
T ss_pred cce-EEEEEEeCCC-ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence 556 9999997655 47888888999999976321110 01123333333356799999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
|+|+| .+||+.+.|+ +||||..+. ..+..++..-+...|++|||||+||++|++|..|.||.+.
T Consensus 298 FS~DG------~~LA~VSqDGfLRvF~fdt~-eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~-------- 362 (636)
T KOG2394|consen 298 FSPDG------KYLATVSQDGFLRIFDFDTQ-ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE-------- 362 (636)
T ss_pred EcCCC------ceEEEEecCceEEEeeccHH-HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec--------
Confidence 99999 8999999999 999999876 5555555667788999999999999999999999999993
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCC------------------------------------------------
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT------------------------------------------------ 347 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~------------------------------------------------ 347 (568)
.++. +..-++|...|..|+|.|..
T Consensus 363 erRV--------VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~ 434 (636)
T KOG2394|consen 363 ERRV--------VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVT 434 (636)
T ss_pred cceE--------EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceE
Confidence 2433 34667899999999998310
Q ss_pred CEEEEEeCCCeEEEEEcCCCeee
Q 008363 348 GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
-.|.+.+.|-.+.+||+....+.
T Consensus 435 YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 435 YRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred EEeecccccceEEEEecchhhcc
Confidence 15778889999999999655443
No 194
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=2e-12 Score=123.90 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=146.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..|++|-.+|.+.+|....+..... ..+.+ ..+ ..+ ..|.=++. .-.++|+|+..
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~hss------------~l~~l----------a~g-~g~-~~~r~~~~-~p~Iva~GGke 170 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLHSS------------KLIKL----------ATG-PGL-YDVRQTDT-DPYIVATGGKE 170 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccccc------------cceee----------ecC-Cce-eeeccCCC-CCceEecCchh
Confidence 5899999999999999986432100 00000 111 112 33332222 22477779988
Q ss_pred --CeEEEEEccCCCCCCCCceeEEeeCCC-----------CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363 203 --GTVALWKFVASDSSIDSRPLLCFSADT-----------LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR 268 (568)
Q Consensus 203 --g~I~iwd~~~~~~~~~~~~~~~~~~h~-----------~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~ 268 (568)
..+.|||+... .+.|.+.. -+++++.|-+.. ..+.||++..-+ |++||.+.+.+
T Consensus 171 ~~n~lkiwdle~~--------~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~----~~~~fat~T~~hqvR~YDt~~qRR 238 (412)
T KOG3881|consen 171 NINELKIWDLEQS--------KQIWSAKNVPNDRLGLRVPVWITDIRFLEGS----PNYKFATITRYHQVRLYDTRHQRR 238 (412)
T ss_pred cccceeeeecccc--------eeeeeccCCCCccccceeeeeeccceecCCC----CCceEEEEecceeEEEecCcccCc
Confidence 88999999854 33333321 246788898873 237899999888 99999999989
Q ss_pred ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363 269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~ 348 (568)
|+..+.--..+|+++...|++++|++|..-|.+..||+|. ++.. ...+.+..+.|+++..+|.++
T Consensus 239 PV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~--------~kl~-------g~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 239 PVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRG--------GKLL-------GCGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred ceeEeccccCcceeeeecCCCcEEEEecccchhheecccC--------ceee-------ccccCCccCCcceEEEcCCCc
Confidence 9988887788899999999999999999999999999975 4333 235788899999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeee
Q 008363 349 MVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+|++||.|..|+|+|+.+.++.
T Consensus 304 ~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eEEeeccceeEEEeecccchhh
Confidence 9999999999999999875544
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=2.6e-13 Score=132.34 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=162.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEEeecceecc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~~~~~~ 172 (568)
.+.|+.+| ..|+.|+.-|.|-.+|+.+++....+..... ........+.+++..-...
T Consensus 134 ~~~ytrnG----------rhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtEl 203 (545)
T KOG1272|consen 134 HLDYTRNG----------RHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTEL 203 (545)
T ss_pred eeeecCCc----------cEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEE
Confidence 78999999 7899999999999999999888776643322 2223333444443321000
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
+.......| ..++|- |..-+|++++..|.++--|+..+ +.+..+..-.+.+..+.-+|.. .++-+
T Consensus 204 HClk~~~~v-~rLeFL--PyHfLL~~~~~~G~L~Y~DVS~G------klVa~~~t~~G~~~vm~qNP~N------aVih~ 268 (545)
T KOG1272|consen 204 HCLKRHIRV-ARLEFL--PYHFLLVAASEAGFLKYQDVSTG------KLVASIRTGAGRTDVMKQNPYN------AVIHL 268 (545)
T ss_pred eehhhcCch-hhhccc--chhheeeecccCCceEEEeechh------hhhHHHHccCCccchhhcCCcc------ceEEE
Confidence 001122345 778888 66778999999999999999987 7788887788889999999998 78889
Q ss_pred EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
|..+| |.+|..... .++..+..|.++|.+|++.++|+|++++|.|..|+|||+|++. +. +++
T Consensus 269 GhsnGtVSlWSP~sk-ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---------------ql-~t~ 331 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSK-EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---------------QL-HTY 331 (545)
T ss_pred cCCCceEEecCCCCc-chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---------------cc-cee
Confidence 98888 999999877 8888888999999999999999999999999999999998854 11 233
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
.. ..+...++||..| +++++....|.||.
T Consensus 332 ~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 332 RT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred ec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 22 3456678887655 55666667899995
No 196
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=5.2e-12 Score=116.87 Aligned_cols=152 Identities=17% Similarity=0.349 Sum_probs=106.9
Q ss_pred eEEEEccCCCCCEEEEEeC----------CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCH----------DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+.|+ +.|++|++-.. -|...||-++... .+...+. ...++|.+++|+|++ +.||
T Consensus 9 ~~~~W~--~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-----~~~~~i~l~~~~~I~~~~WsP~g------~~fa 75 (194)
T PF08662_consen 9 AKLHWQ--PSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-----IPVESIELKKEGPIHDVAWSPNG------NEFA 75 (194)
T ss_pred EEEEec--ccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-----CccceeeccCCCceEEEEECcCC------CEEE
Confidence 578899 77877665433 2446677765431 2333332 235579999999998 5655
Q ss_pred EE--cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccc
Q 008363 252 TA--GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 252 s~--s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.. ..+. |.|||++ . ..+..+. ...++.|.|+|+|++|++++. .|.|.+||+++ .
T Consensus 76 vi~g~~~~~v~lyd~~-~-~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--------~-------- 135 (194)
T PF08662_consen 76 VIYGSMPAKVTLYDVK-G-KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--------K-------- 135 (194)
T ss_pred EEEccCCcccEEEcCc-c-cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--------C--------
Confidence 44 3456 9999997 3 5666664 456789999999999999875 46799999964 2
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEEcCCCee
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSA------DGTVHRFQLTAKAV 369 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~------Dg~v~iwd~~~~~~ 369 (568)
+.+..+. | ..++.++|+|+|++|++++. |..++||++....+
T Consensus 136 ~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 136 KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 2223332 3 34789999999999999874 78999999965443
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.48 E-value=2e-12 Score=135.30 Aligned_cols=225 Identities=20% Similarity=0.300 Sum_probs=155.6
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceecccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..|...++ .+.|..+.. . .-+++++.||.|..|+++.... ...+.... ...+...
T Consensus 288 ~sh~~~v~-~vvW~~~~~-------~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~--------------~~~~~~~- 343 (555)
T KOG1587|consen 288 VSHSEPVT-AVVWLQNEH-------N-TEFFSLSSDGSICSWDTDMLSLPVEGLLLES--------------KKHKGQQ- 343 (555)
T ss_pred ccCCcCeE-EEEEeccCC-------C-CceEEEecCCcEeeeeccccccchhhccccc--------------ccccccc-
Confidence 45777555 999988762 1 4588888899999998876332 11110000 0000000
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
..-...+ ++++|.+.. -..+++|+.+|.|.-=+-...... ...+.+..+..|.++|+++.++|-+ +.+|.+
T Consensus 344 ~~~~~~~-t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----~k~fls 416 (555)
T KOG1587|consen 344 SSKAVGA-TSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----PKNFLS 416 (555)
T ss_pred cccccce-eeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc-----cceeee
Confidence 0112233 889998763 368999999999877333222110 0113344677899999999999998 478888
Q ss_pred EcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 253 AGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 253 ~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+++.+|+||.......|+..+..+...|++++|||....+++ +..||.|.+||+.... - .++...
T Consensus 417 ~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~------~--------~Pv~s~ 482 (555)
T KOG1587|consen 417 VGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD------E--------EPVLSQ 482 (555)
T ss_pred eccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc------c--------CCcccc
Confidence 885569999988455888888888888999999998765555 4559999999996522 2 223344
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..+....+.+.|++.|++|+.|...|.+.+|++.
T Consensus 483 ~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 4456677888999999999999999999999994
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.48 E-value=8.1e-12 Score=119.06 Aligned_cols=183 Identities=19% Similarity=0.225 Sum_probs=137.2
Q ss_pred EEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363 124 YLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 124 ~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
++|..+.+. .+++.++.....+..+ .....| .+|..+ -++|+++-.
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------------------------~fpt~I-L~VrmN----r~RLvV~Le 105 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEI---------------------------FFPTSI-LAVRMN----RKRLVVCLE 105 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEE---------------------------ecCCce-EEEEEc----cceEEEEEc
Confidence 455555443 4888888876655443 234566 888877 346666665
Q ss_pred CCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEE-cCC-C-EEEEECCCCCcceeeeCC
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTA-GHG-G-LKFWDIRDPFRPLWDIHP 275 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~-s~d-~-v~lwD~~~~~~~~~~~~~ 275 (568)
+ .|.|||++.. ++++++. .|...+.++++++.+ .++|-= +.+ | |.|||+.+- +++..+..
T Consensus 106 e-~IyIydI~~M------klLhTI~t~~~n~~gl~AlS~n~~n------~ylAyp~s~t~GdV~l~d~~nl-~~v~~I~a 171 (391)
T KOG2110|consen 106 E-SIYIYDIKDM------KLLHTIETTPPNPKGLCALSPNNAN------CYLAYPGSTTSGDVVLFDTINL-QPVNTINA 171 (391)
T ss_pred c-cEEEEecccc------eeehhhhccCCCccceEeeccCCCC------ceEEecCCCCCceEEEEEcccc-eeeeEEEe
Confidence 4 4999999976 6666553 345557777777666 577654 333 5 999999987 89999999
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEE
Q 008363 276 APKFIYGLDWLPDPGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 276 h~~~i~~l~~sp~~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s 352 (568)
|.+.+.+++|+|+|.+|+++++.|+ ||||.+. .|+.+ ..|+.. ...|.+++|+|++.+|++
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~--------~G~kl--------~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVP--------EGQKL--------YEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcC--------CccEe--------eeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999999999999999999999887 6999994 36443 455432 246889999999999999
Q ss_pred EeCCCeEEEEEcCCCe
Q 008363 353 CSADGTVHRFQLTAKA 368 (568)
Q Consensus 353 ~s~Dg~v~iwd~~~~~ 368 (568)
.|..++|+||.++...
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999997654
No 199
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=2.3e-11 Score=109.68 Aligned_cols=214 Identities=17% Similarity=0.165 Sum_probs=141.8
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..-.++...+|++ .++.++|.. .+|++|+ ||.|+=|.........- .-++|..
T Consensus 51 gk~~iv~eqahdg-piy~~~f~d------------~~Lls~g-dG~V~gw~W~E~~es~~-------------~K~lwe~ 103 (325)
T KOG0649|consen 51 GKLKIVPEQAHDG-PIYYLAFHD------------DFLLSGG-DGLVYGWEWNEEEESLA-------------TKRLWEV 103 (325)
T ss_pred CCcceeeccccCC-Ceeeeeeeh------------hheeecc-CceEEEeeehhhhhhcc-------------chhhhhh
Confidence 3445666789999 677999983 3677765 49999998876322100 0012222
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
......-.-....| .++-.. |..+-|+.++.|+.+.-||++++ +..+++++|+..|.+++--...
T Consensus 104 ~~P~~~~~~evPeI-Nam~ld--P~enSi~~AgGD~~~y~~dlE~G------~i~r~~rGHtDYvH~vv~R~~~------ 168 (325)
T KOG0649|consen 104 KIPMQVDAVEVPEI-NAMWLD--PSENSILFAGGDGVIYQVDLEDG------RIQREYRGHTDYVHSVVGRNAN------ 168 (325)
T ss_pred cCccccCcccCCcc-ceeEec--cCCCcEEEecCCeEEEEEEecCC------EEEEEEcCCcceeeeeeecccC------
Confidence 11111101112334 555544 44455666667999999999987 8999999999999999974444
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeeeC---------CC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDIH---------PA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~~---------~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
..+.||++|| +|+||+++. +++..+. .| ...|.+++-+ ..+|++|+. -.+.+|++|...
T Consensus 169 ~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGgG-p~lslwhLrsse------ 238 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGGG-PKLSLWHLRSSE------ 238 (325)
T ss_pred cceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEecc--CceEEecCC-CceeEEeccCCC------
Confidence 4788999999 999999988 6665543 22 2346666655 557777654 568899997632
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+ .++.. -.+.|..+.|. ...+++++....|.-|.+..
T Consensus 239 --~------t~vfp---ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 239 --S------TCVFP---IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred --c------eEEEe---cccceeEeeee--cceEEEeccccceeeeeecc
Confidence 2 12223 34556777774 56788888888999999854
No 200
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6e-12 Score=131.92 Aligned_cols=195 Identities=17% Similarity=0.148 Sum_probs=129.3
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..|.. .+...+|+|++ +.|+.++.+ ..|++||+.+++..... .
T Consensus 200 t~~~~-~v~~p~wSPDG----------~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~---------------------- 245 (429)
T PRK01742 200 NRSSQ-PLMSPAWSPDG----------SKLAYVSFENKKSQLVVHDLRSGARKVVA-S---------------------- 245 (429)
T ss_pred ccCCC-ccccceEcCCC----------CEEEEEEecCCCcEEEEEeCCCCceEEEe-c----------------------
Confidence 45555 45599999999 788877654 36999999886532110 0
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+| . ..++|+ |+|+.|+.++ .+|.+.||.+... ......+..|...+....|+|++ ..|+
T Consensus 246 -~~g~---~-~~~~wS--PDG~~La~~~~~~g~~~Iy~~d~~-----~~~~~~lt~~~~~~~~~~wSpDG------~~i~ 307 (429)
T PRK01742 246 -FRGH---N-GAPAFS--PDGSRLAFASSKDGVLNIYVMGAN-----GGTPSQLTSGAGNNTEPSWSPDG------QSIL 307 (429)
T ss_pred -CCCc---c-CceeEC--CCCCEEEEEEecCCcEEEEEEECC-----CCCeEeeccCCCCcCCEEECCCC------CEEE
Confidence 0222 2 467999 8999888765 6887777654321 12234455677778899999999 6665
Q ss_pred EEc-CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 252 TAG-HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 252 s~s-~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
.++ .++ ..||++.........+ .+.. ..+.|+|+|++|+.++.++ +.+||+.. |+..
T Consensus 308 f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~--------g~~~--------- 366 (429)
T PRK01742 308 FTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS--------GSTE--------- 366 (429)
T ss_pred EEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC--------CCeE---------
Confidence 554 456 8888765432222223 3333 4678999999999887765 55699843 4321
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
.+..+ .....+.|+|+|++|++++.+|.+.+|++
T Consensus 367 ~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 367 VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence 11111 12356789999999999999999988886
No 201
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=5.7e-12 Score=119.57 Aligned_cols=199 Identities=15% Similarity=0.233 Sum_probs=137.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+.-++|++.- ..+|++..|-.|++|+-.. .+...+. ......|
T Consensus 100 dlr~~aWhqH~----------~~fava~nddvVriy~kss-t~pt~Lk-------------------------s~sQrnv 143 (445)
T KOG2139|consen 100 DLRGVAWHQHI----------IAFAVATNDDVVRIYDKSS-TCPTKLK-------------------------SVSQRNV 143 (445)
T ss_pred ceeeEeechhh----------hhhhhhccCcEEEEeccCC-CCCceec-------------------------chhhcce
Confidence 45578999976 6899999999999999876 4433331 1223456
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC--------CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID--------SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~--------~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+|++|-|... ..|+.|+.. -|.||.......... ...+....+| .+|+++.|+++| ..++++
T Consensus 144 -tclawRPlsa-selavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dg------t~l~tA 213 (445)
T KOG2139|consen 144 -TCLAWRPLSA-SELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDG------TILVTA 213 (445)
T ss_pred -eEEEeccCCc-ceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCC------CEEeec
Confidence 9999996633 478888865 489998764322100 0112233455 679999999999 899999
Q ss_pred cCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 254 GHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 254 s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+.+. |.|||..++ ..+....--.+.++-+.||||+.+|+++.-|+..++|...... +. ...
T Consensus 214 S~gsssi~iWdpdtg-~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~w-----t~-----------erw 276 (445)
T KOG2139|consen 214 SFGSSSIMIWDPDTG-QKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSW-----TK-----------ERW 276 (445)
T ss_pred ccCcceEEEEcCCCC-CcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccc-----ee-----------cce
Confidence 8874 999999987 3332222335678899999999999999999999999763311 00 112
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
....+.|...+|+|+|++|+.++. |.-++|.+
T Consensus 277 ~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl 308 (445)
T KOG2139|consen 277 ILGSGRVQTACWSPCGSFLLFACS-GSPRLYSL 308 (445)
T ss_pred eccCCceeeeeecCCCCEEEEEEc-CCceEEEE
Confidence 223458999999999976655542 33445555
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.5e-12 Score=124.25 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=138.0
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCc
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~ 248 (568)
|.+.+.+|++.| .++.|+ .++++|++|+.|..+++|.+.........+++..... |.+.|.|++|.... .
T Consensus 48 ~qKD~~~H~GCi-NAlqFS--~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N------~ 118 (609)
T KOG4227|consen 48 CQKDVREHTGCI-NALQFS--HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN------R 118 (609)
T ss_pred hhhhhhhhcccc-ceeeec--cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC------e
Confidence 555668999999 999999 8899999999999999999875433333466665543 55889999999987 8
Q ss_pred EEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 249 VILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
++.+|+.++ |.+.|+.+. ..+..+. ...+.|+.+..+|..+.|++.+.++.|.+||.|... ..+.++
T Consensus 119 ~~~SG~~~~~VI~HDiEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~----~~~~~~----- 188 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ----NPISLV----- 188 (609)
T ss_pred eEecCCCcceeEeeecccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC----CCCcee-----
Confidence 999999998 999999987 5555543 234589999999999999999999999999998643 223332
Q ss_pred cceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~ 365 (568)
.+........++.|+|.. .+|++.+.-+-+-+||..
T Consensus 189 ----~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 189 ----LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred ----eecCCCccceeeeecCCCceeEEeccccCCCCceeec
Confidence 333344567889999986 788999999999999985
No 203
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.43 E-value=2.7e-12 Score=120.00 Aligned_cols=171 Identities=16% Similarity=0.237 Sum_probs=139.1
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
..+| +|.+|+ +++..+|++.....|.||....... .++.+++..|...|+.|.|+|.. +.|++|+.|.
T Consensus 10 ~~pi-tchAwn--~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap~s------nrIvtcs~dr 77 (361)
T KOG1523|consen 10 LEPI-TCHAWN--SDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAPKS------NRIVTCSHDR 77 (361)
T ss_pred cCce-eeeeec--CCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecCCC------CceeEccCCC
Confidence 4567 999999 8999999999999999999887641 37888999999999999999998 8999999998
Q ss_pred -EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 258 -LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 258 -v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
-++|....+. .+...+..+....+++.|+|.++.+++|+.-..|.||=+..-. + . ...-+.-..+
T Consensus 78 nayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN-d------W-----WVsKhikkPi 145 (361)
T KOG1523|consen 78 NAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN-D------W-----WVSKHIKKPI 145 (361)
T ss_pred CccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc-c------e-----ehhhhhCCcc
Confidence 9999985443 5566667788999999999999999999999999998773211 0 0 0011233456
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
...|+++.|+|++-+|++||.|+.++||..--..++..
T Consensus 146 rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 146 RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred ccceeeeeccCCcceecccccCcceeEEEEeeeccccC
Confidence 78899999999999999999999999998754444433
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=119.20 Aligned_cols=156 Identities=16% Similarity=0.261 Sum_probs=120.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
-+|++|-.+|.|.+||+.++..+..+... |++ ......|..+| ++++|. +.-+.=++|+.+
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~~~~~~~-------------~kv---~~~~ash~qpv-lsldya--s~~~rGisgga~ 226 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKIIQLPQS-------------SKV---ESPNASHKQPV-LSLDYA--SSCDRGISGGAD 226 (323)
T ss_pred EEEEEeccCCeEEEEEccCCceeeccccc-------------ccc---ccchhhccCcc-eeeeec--hhhcCCcCCCcc
Confidence 47788889999999999997544333111 111 11226789999 999988 444456788888
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY 281 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~ 281 (568)
-.+..|++......-.... .+.-..-.|..+.+-|++ +++||++.|+ ||+|..++. .++..+.-|.+.|+
T Consensus 227 dkl~~~Sl~~s~gslq~~~--e~~lknpGv~gvrIRpD~------KIlATAGWD~RiRVyswrtl-~pLAVLkyHsagvn 297 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRK--EITLKNPGVSGVRIRPDG------KILATAGWDHRIRVYSWRTL-NPLAVLKYHSAGVN 297 (323)
T ss_pred ccceeeeeccccCcccccc--eEEecCCCccceEEccCC------cEEeecccCCcEEEEEeccC-Cchhhhhhhhccee
Confidence 8999999875522111122 222234568999999999 9999999999 999999988 99999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 282 GLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 282 ~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
+++|+|+...+++++.|++|-+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999987
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.43 E-value=2.2e-12 Score=124.98 Aligned_cols=163 Identities=16% Similarity=0.236 Sum_probs=121.6
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD 262 (568)
.+++|+ .+|..|++|+.||++|||++... ..+.....|.+.|.++.|+|++ .+|++.+.|..+||+
T Consensus 148 k~vaf~--~~gs~latgg~dg~lRv~~~Ps~------~t~l~e~~~~~eV~DL~FS~dg------k~lasig~d~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFN--GDGSKLATGGTDGTLRVWEWPSM------LTILEEIAHHAEVKDLDFSPDG------KFLASIGADSARVWS 213 (398)
T ss_pred eEEEEc--CCCCEeeeccccceEEEEecCcc------hhhhhhHhhcCccccceeCCCC------cEEEEecCCceEEEE
Confidence 568888 88999999999999999997755 6667778899999999999999 899999999999999
Q ss_pred CCCCCcceeeeCC--CCCCeEEEEEcCCC---CEEEEE--eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363 263 IRDPFRPLWDIHP--APKFIYGLDWLPDP---GCVILS--FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS 335 (568)
Q Consensus 263 ~~~~~~~~~~~~~--h~~~i~~l~~sp~~---~~l~s~--~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~ 335 (568)
++++ .++..... -......+.|+.|+ .+++.+ ..-+.|++||+....- +..+ .......-.
T Consensus 214 ~~~g-~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-----~~~l------~~~~~~~~~ 281 (398)
T KOG0771|consen 214 VNTG-AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-----SNFL------RLRKKIKRF 281 (398)
T ss_pred eccC-chhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-----cccc------chhhhhhcc
Confidence 9988 55544432 22335678888777 333333 4467788888754331 1111 111222223
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
..|.+++++++|++++.|+.||.|-|++..+.+..+
T Consensus 282 ~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~ 317 (398)
T KOG0771|consen 282 KSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ 317 (398)
T ss_pred CcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE
Confidence 478999999999999999999999999997654443
No 206
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=2.8e-11 Score=127.12 Aligned_cols=205 Identities=11% Similarity=0.116 Sum_probs=148.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.-..-.|++++ ++|+.+. +..|.||...++.|+..+ .+|..++
T Consensus 18 ~~~~avfSnD~----------k~l~~~~-~~~V~VyS~~Tg~~i~~l--------------------------~~~~a~l 60 (792)
T KOG1963|consen 18 NKSPAVFSNDA----------KFLFLCT-GNFVKVYSTATGECITSL--------------------------EDHTAPL 60 (792)
T ss_pred eecccccccCC----------cEEEEee-CCEEEEEecchHhhhhhc--------------------------ccccCcc
Confidence 44466789998 5666554 578999999999999776 8899998
Q ss_pred ceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC------------------------------
Q 008363 182 PLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL------------------------------ 230 (568)
Q Consensus 182 ~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------------------------ 230 (568)
+.+...|.+.. .++.+++.||+|++||...+. .+.++..+..
T Consensus 61 -~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~------Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~ 133 (792)
T KOG1963|consen 61 -TSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE------LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTF 133 (792)
T ss_pred -ceeeecCCCccceEEEEEecCccEEEecCCCcE------EEEEEecCCceeEEEechhHhCccceeEeecccceeeeec
Confidence 99998876554 577899999999999998663 2222221100
Q ss_pred ----------------------------CeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--ee-eCCCCCC
Q 008363 231 ----------------------------PIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WD-IHPAPKF 279 (568)
Q Consensus 231 ----------------------------~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~-~~~h~~~ 279 (568)
.-.+|.+++.+ .+.+.....++.+|+.....+.. +. -..|.-.
T Consensus 134 s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g------e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~ 207 (792)
T KOG1963|consen 134 SKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG------EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFN 207 (792)
T ss_pred ccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc------eEEEEEEeeeEEEEEecccceeeccchhhhhhccc
Confidence 01234444444 55555555568888887643111 11 1245666
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeE
Q 008363 280 IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV 359 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v 359 (568)
+++.++||.+++++++..||.|.+|.--..+ +.. ...+.+..|...|.+++|+++|.+|++||..|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~------~~~------~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VL 275 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSS------DDS------ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVL 275 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccc------ccc------ccceEEEecccccceeEEecCCceEeecccceEE
Confidence 8999999999999999999999999542211 111 2235788899999999999999999999999999
Q ss_pred EEEEcCCCe
Q 008363 360 HRFQLTAKA 368 (568)
Q Consensus 360 ~iwd~~~~~ 368 (568)
.+|.+.+++
T Consensus 276 v~Wq~~T~~ 284 (792)
T KOG1963|consen 276 VLWQLETGK 284 (792)
T ss_pred EEEeecCCC
Confidence 999998877
No 207
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=2.2e-11 Score=127.69 Aligned_cols=204 Identities=15% Similarity=0.163 Sum_probs=135.1
Q ss_pred CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC---CeEEE
Q 008363 131 NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVAL 207 (568)
Q Consensus 131 dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~i 207 (568)
+..|.|||..... .+.+ ..|...+ .++.|+ |+|+.|+.++.+ ..|.+
T Consensus 183 ~~~i~i~d~dg~~-~~~l--------------------------t~~~~~v-~~p~wS--PDG~~la~~s~~~~~~~i~i 232 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIV--------------------------NRSSQPL-MSPAWS--PDGSKLAYVSFENKKSQLVV 232 (429)
T ss_pred eEEEEEECCCCCC-ceEe--------------------------ccCCCcc-ccceEc--CCCCEEEEEEecCCCcEEEE
Confidence 4689999987643 3333 5566677 899999 899999887754 36999
Q ss_pred EEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EE--EEECCCCCcceeeeCCCCCCeEEE
Q 008363 208 WKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LK--FWDIRDPFRPLWDIHPAPKFIYGL 283 (568)
Q Consensus 208 wd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~--lwD~~~~~~~~~~~~~h~~~i~~l 283 (568)
||+.++.. ..+..+.+| ...++|+|++ +.|+.++ .++ +. +||+.++ ....+..+...+..+
T Consensus 233 ~dl~tg~~----~~l~~~~g~---~~~~~wSPDG------~~La~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~ 297 (429)
T PRK01742 233 HDLRSGAR----KVVASFRGH---NGAPAFSPDG------SRLAFASSKDGVLNIYVMGANGG--TPSQLTSGAGNNTEP 297 (429)
T ss_pred EeCCCCce----EEEecCCCc---cCceeECCCC------CEEEEEEecCCcEEEEEEECCCC--CeEeeccCCCCcCCE
Confidence 99986621 334444444 3468999999 6776654 455 55 4566544 344555666778899
Q ss_pred EEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 284 DWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 284 ~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
.|+|||+.|+.++ .+|...||++... +... ..+ .+.. ..+.|+|+|++|+.++.++ +.+|
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~-------~~~~--------~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~ 358 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSAS-------GGGA--------SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQ 358 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECC-------CCCe--------EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEE
Confidence 9999999888765 4788899987431 1111 122 3333 4578999999998888765 5569
Q ss_pred EcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363 363 QLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN 401 (568)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~ 401 (568)
|+.++......... .....++++++..|+..+....
T Consensus 359 Dl~~g~~~~lt~~~---~~~~~~~sPdG~~i~~~s~~g~ 394 (429)
T PRK01742 359 DLTSGSTEVLSSTF---LDESPSISPNGIMIIYSSTQGL 394 (429)
T ss_pred ECCCCCeEEecCCC---CCCCceECCCCCEEEEEEcCCC
Confidence 99887654321111 1123357888888877665433
No 208
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.41 E-value=3.3e-10 Score=106.21 Aligned_cols=225 Identities=17% Similarity=0.252 Sum_probs=145.4
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEee
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEP 166 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~ 166 (568)
...+.+..+.... .|.+|++.++. |++.. .+.|.||.+.+ .+.++.+..
T Consensus 83 ~k~~~i~el~f~~-~I~~V~l~r~r------------iVvvl-~~~I~VytF~~n~k~l~~~et---------------- 132 (346)
T KOG2111|consen 83 LKERCIIELSFNS-EIKAVKLRRDR------------IVVVL-ENKIYVYTFPDNPKLLHVIET---------------- 132 (346)
T ss_pred ccCcEEEEEEecc-ceeeEEEcCCe------------EEEEe-cCeEEEEEcCCChhheeeeec----------------
Confidence 3444444555566 34488887764 44443 57899999984 555544311
Q ss_pred cceecccccCCcCccceEEEEccCCCCCEEEE-EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s-gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
......+ .++. |+.+..+||. |-.-|.|.|-|+..... .+-..+.+|.+.|.|++.+-+|
T Consensus 133 --------~~NPkGl-C~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~----~~p~~I~AH~s~Iacv~Ln~~G---- 193 (346)
T KOG2111|consen 133 --------RSNPKGL-CSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKP----NAPSIINAHDSDIACVALNLQG---- 193 (346)
T ss_pred --------ccCCCce-Eeec--CCCCceEEEcCCCccceEEEEEhhhcCc----CCceEEEcccCceeEEEEcCCc----
Confidence 1111112 3333 4444344444 44569999999986622 2456788999999999999999
Q ss_pred CCcEEEEEcCCC--EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-CCCCCc
Q 008363 246 SANVILTAGHGG--LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-ATGKPF 320 (568)
Q Consensus 246 ~~~~las~s~d~--v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-~~g~~~ 320 (568)
.++||+|..| |||||..++ ..+..++ .....|++|+|||+..+|+++++.|+|+||.++....... ......
T Consensus 194 --t~vATaStkGTLIRIFdt~~g-~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~ 270 (346)
T KOG2111|consen 194 --TLVATASTKGTLIRIFDTEDG-TLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSF 270 (346)
T ss_pred --cEEEEeccCcEEEEEEEcCCC-cEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCccccccccc
Confidence 8999999986 999999998 6665554 2345689999999999999999999999999976431110 000000
Q ss_pred cC-------ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 321 AG-------TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 321 ~~-------~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
.. .....+..+.-..+...-++|..+...++..+.||..+-+.+
T Consensus 271 ~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 271 KRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred cccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 00 001122333444556666778777666777777887665555
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=2.8e-11 Score=112.02 Aligned_cols=109 Identities=26% Similarity=0.578 Sum_probs=85.3
Q ss_pred CcCccceEEEEccCCCCCEEEE--EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLA--GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~s--gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
..+.| .+++|+ |+|+.||+ |..++.|.+||++ . ..+..+. ...+..|.|+|+| ++|+.++
T Consensus 58 ~~~~I-~~~~Ws--P~g~~favi~g~~~~~v~lyd~~-~------~~i~~~~--~~~~n~i~wsP~G------~~l~~~g 119 (194)
T PF08662_consen 58 KEGPI-HDVAWS--PNGNEFAVIYGSMPAKVTLYDVK-G------KKIFSFG--TQPRNTISWSPDG------RFLVLAG 119 (194)
T ss_pred CCCce-EEEEEC--cCCCEEEEEEccCCcccEEEcCc-c------cEeEeec--CCCceEEEECCCC------CEEEEEE
Confidence 34458 999999 77887654 4467899999996 2 5666663 5678899999999 8998886
Q ss_pred CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEc
Q 008363 255 HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSL 306 (568)
Q Consensus 255 ~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~ 306 (568)
.+ | |.+||+++. ..+.... | ..++.++|+|||++|++++. |+.++||+.
T Consensus 120 ~~n~~G~l~~wd~~~~-~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKK-KKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred ccCCCcEEEEEECCCC-EEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe
Confidence 43 6 999999965 6665553 3 34789999999999999854 888999998
No 210
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.40 E-value=1.1e-11 Score=121.88 Aligned_cols=252 Identities=14% Similarity=0.147 Sum_probs=172.5
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEec-cCC----------------ccCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYL-SSM----------------KEGT 157 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~-~~~----------------~~~~ 157 (568)
+-.|.| ||..|.|+..| ..|++|+.|..|.+||+..+.....+.+ |.. +..+
T Consensus 138 L~~H~G-cVntV~FN~~G----------d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 138 LNKHKG-CVNTVHFNQRG----------DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred ccCCCC-ccceeeecccC----------ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc
Confidence 446888 77799999999 7999999999999999988665544322 221 3445
Q ss_pred CCceEEEeecce---e--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC--
Q 008363 158 DPRFVKLEPVFR---C--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-- 230 (568)
Q Consensus 158 ~~~~v~~~~~~~---~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-- 230 (568)
.++.+++-.+.. + ...+..|.+.| .-++--|... ..|.+++.|+.+.-+|++..... ..+.+-..+..
T Consensus 207 ~dgqvr~s~i~~t~~~e~t~rl~~h~g~v-hklav~p~sp-~~f~S~geD~~v~~~Dlr~~~pa---~~~~cr~~~~~~~ 281 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYVENTKRLAPHEGPV-HKLAVEPDSP-KPFLSCGEDAVVFHIDLRQDVPA---EKFVCREADEKER 281 (559)
T ss_pred ccCceeeeeeccccceecceecccccCcc-ceeeecCCCC-CcccccccccceeeeeeccCCcc---ceeeeeccCCccc
Confidence 555555544433 1 22345677887 7777665433 47899999999999999877431 12223334444
Q ss_pred -CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-----ceeeeC------CCCCCeEEEEEcCCCCEEEEEeC
Q 008363 231 -PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-----PLWDIH------PAPKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 231 -~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-----~~~~~~------~h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
..++|+.+|.. ++.||+++.|. +++||.+.-.. ++..+. ...-.|++++|+.++.-|+++..
T Consensus 282 v~L~~Ia~~P~n-----t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 282 VGLYTIAVDPRN-----TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred eeeeeEecCCCC-----ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 57889999987 47999999998 99999986421 122222 22345899999999999999999
Q ss_pred CCcEEEEEccccccC-CCCCCCCccCccccceE-EEecCCC--CEEEEE-EecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 298 DGAMRIVSLLKAAYD-VPATGKPFAGTKQQGLH-LVNCSSF--AIWSVQ-VSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 298 dg~I~lwd~~~~~~~-~~~~g~~~~~~~~~~l~-~~~~h~~--~V~~l~-~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
|-.|+||.- ..... .|.+-.+. .+.+. .++||.. .|-++- |.|...|+++||.-|.|.||+-.++.+.+-
T Consensus 357 De~IYLF~~-~~~~G~~p~~~s~~----~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 357 DEDIYLFNK-SMGDGSEPDPSSPR----EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred ccceEEecc-ccccCCCCCCCcch----hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 999999943 22211 11111110 01122 4888874 355654 457789999999999999999988876554
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=6.6e-12 Score=124.76 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=111.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--c---eeeEEec------cCCccCCCCceEEEeeccee
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--R---TMKAIYL------SSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~---~~~~l~~------~~~~~~~~~~~v~~~~~~~~ 170 (568)
.+.+++|-|.++ .+++++-.+|.+.+||..-. . +...+.. +...+......+.-|.
T Consensus 221 svT~ikWvpg~~---------~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~---- 287 (636)
T KOG2394|consen 221 SVTCIKWVPGSD---------SLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH---- 287 (636)
T ss_pred ceEEEEEEeCCC---------ceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE----
Confidence 345999999887 78888899999999986320 0 0000000 0000111111111111
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
--...| ..++|+ +||.+||+.+.||.++|||+.+. ..+..++..-+...|++|+|+| ++|
T Consensus 288 -----~~~g~i-n~f~FS--~DG~~LA~VSqDGfLRvF~fdt~------eLlg~mkSYFGGLLCvcWSPDG------KyI 347 (636)
T KOG2394|consen 288 -----IGEGSI-NEFAFS--PDGKYLATVSQDGFLRIFDFDTQ------ELLGVMKSYFGGLLCVCWSPDG------KYI 347 (636)
T ss_pred -----eccccc-cceeEc--CCCceEEEEecCceEEEeeccHH------HHHHHHHhhccceEEEEEcCCc------cEE
Confidence 122356 778888 89999999999999999999976 5666666667889999999999 999
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP 287 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp 287 (568)
++|++|- |.||.+... +.+..-++|..+|+.|+|.|
T Consensus 348 vtGGEDDLVtVwSf~er-RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEER-RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EecCCcceEEEEEeccc-eEEEeccccccceeeEeecc
Confidence 9999999 999999976 88888899999999999984
No 212
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.38 E-value=7.6e-10 Score=112.22 Aligned_cols=202 Identities=7% Similarity=0.041 Sum_probs=129.2
Q ss_pred EEEEccCCCCcccccCcccEEEEE-eCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVL-LGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~-s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.++++|++ ++|+++ ..++.|.+|++.. +.. ..... ...... +
T Consensus 39 ~l~~spd~----------~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~------------------------~~~~~~-p 82 (330)
T PRK11028 39 PMVISPDK----------RHLYVGVRPEFRVLSYRIADDGAL-TFAAE------------------------SPLPGS-P 82 (330)
T ss_pred cEEECCCC----------CEEEEEECCCCcEEEEEECCCCce-EEeee------------------------ecCCCC-c
Confidence 78999999 677655 4588999999973 322 11100 001112 2
Q ss_pred eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~ 259 (568)
..+.|+ |++++|++++. ++.|.+|++..... ....+..+. +......++|+|++ +++++++. ++ |.
T Consensus 83 ~~i~~~--~~g~~l~v~~~~~~~v~v~~~~~~g~--~~~~~~~~~-~~~~~~~~~~~p~g------~~l~v~~~~~~~v~ 151 (330)
T PRK11028 83 THISTD--HQGRFLFSASYNANCVSVSPLDKDGI--PVAPIQIIE-GLEGCHSANIDPDN------RTLWVPCLKEDRIR 151 (330)
T ss_pred eEEEEC--CCCCEEEEEEcCCCeEEEEEECCCCC--CCCceeecc-CCCcccEeEeCCCC------CEEEEeeCCCCEEE
Confidence 678888 88988877764 89999999974311 012233332 33446788999998 66655544 46 99
Q ss_pred EEECCCCCcce------eeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 260 FWDIRDPFRPL------WDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 260 lwD~~~~~~~~------~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+||+.+..... .... .......++|+|++++++++.. +++|.+||+... +|+. ..+..+.
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~------~~~~------~~~~~~~ 218 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDP------HGEI------ECVQTLD 218 (330)
T ss_pred EEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCC------CCCE------EEEEEEe
Confidence 99998632211 1111 1234578999999999988876 999999999531 1221 1122222
Q ss_pred cC------CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363 333 CS------SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTA 366 (568)
Q Consensus 333 ~h------~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~ 366 (568)
.+ ......+.|+|++++|+++. .++.|.+|++..
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 11 11234688999999988885 478999999854
No 213
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.36 E-value=6.4e-13 Score=137.83 Aligned_cols=116 Identities=18% Similarity=0.332 Sum_probs=107.5
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+.||...| +|+.|. ..|.+|++|+.|..|+||...+. .++....||++.|+.++.+... .++|
T Consensus 184 krLlgH~naV-yca~fD--rtg~~Iitgsdd~lvKiwS~et~------~~lAs~rGhs~ditdlavs~~n------~~ia 248 (1113)
T KOG0644|consen 184 KRLLGHRNAV-YCAIFD--RTGRYIITGSDDRLVKIWSMETA------RCLASCRGHSGDITDLAVSSNN------TMIA 248 (1113)
T ss_pred HHHHhhhhhe-eeeeec--cccceEeecCccceeeeeeccch------hhhccCCCCccccchhccchhh------hhhh
Confidence 3457999999 999988 88999999999999999998876 8999999999999999999987 7999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
+++.|. |++|.+.++ .++..+.+|++.|++|+|+|-. +++.||++++||.|
T Consensus 249 aaS~D~vIrvWrl~~~-~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 249 AASNDKVIRVWRLPDG-APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred hcccCceEEEEecCCC-chHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 999999 999999988 9999999999999999999965 77889999999987
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=5.1e-11 Score=119.42 Aligned_cols=232 Identities=16% Similarity=0.169 Sum_probs=157.1
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------------
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------------- 153 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------------- 153 (568)
.-+.|...+ ..|..+|+|. -+||+|..--.|++||+...... +..|..
T Consensus 46 Qdfe~p~as-t~ik~s~DGq---------Y~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 46 QDFEMPTAS-TRIKVSPDGQ---------YLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred HhcCCcccc-ceeEecCCCc---------EEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEee
Confidence 345777744 4999999995 57788888899999999873221 111111
Q ss_pred ------------------------------------ccCCCCceEEEeec-ceecccccCCcCccceEEEEccCCCCCEE
Q 008363 154 ------------------------------------KEGTDPRFVKLEPV-FRCSMLKCGGTQSIPLTMEWSTSPPHDYL 196 (568)
Q Consensus 154 ------------------------------------~~~~~~~~v~~~~~-~~~~~~~~~h~~~V~~~v~~s~~~~g~~l 196 (568)
..++...+.++.-. -.++..+....+.+ .+|..+ +-+.+|
T Consensus 114 ~DR~IefHak~G~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~l-N~v~in--~~hgLl 190 (703)
T KOG2321|consen 114 NDRTIEFHAKYGRHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGEL-NVVSIN--EEHGLL 190 (703)
T ss_pred cCceeeehhhcCeeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccc-eeeeec--CccceE
Confidence 11222222222211 11334444555677 888877 667799
Q ss_pred EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-----eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363 197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-----IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
++|+.||.|..||.+.............+..|.+. |+++.|+.+| -.++.|...| |.|||+|+. .++
T Consensus 191 a~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~g------L~~aVGts~G~v~iyDLRa~-~pl 263 (703)
T KOG2321|consen 191 ACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDG------LHVAVGTSTGSVLIYDLRAS-KPL 263 (703)
T ss_pred EecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCc------eeEEeeccCCcEEEEEcccC-Cce
Confidence 99999999999999876321111222222334333 9999999998 7899999998 999999988 555
Q ss_pred -eeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363 271 -WDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 271 -~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~ 348 (568)
..-++..-+|..+.|.+.+ .--+.+.....++|||- .+|+++ ..+. ....+..+|+-|++.
T Consensus 264 ~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~--------~~Gk~~--------asiE-pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 264 LVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDE--------CTGKPM--------ASIE-PTSDLNDFCFVPGSG 326 (703)
T ss_pred eecccCCccceeeecccccCCCceEEecchHHhhhccc--------ccCCce--------eecc-ccCCcCceeeecCCc
Confidence 3344556688999998752 23344455678999998 457664 2433 445689999999999
Q ss_pred EEEEEeCCCeEEEEEc
Q 008363 349 MVAYCSADGTVHRFQL 364 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~ 364 (568)
+++++-.++.+..|-+
T Consensus 327 m~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 327 MFFTANESSKMHTYYI 342 (703)
T ss_pred eEEEecCCCcceeEEc
Confidence 9999998888777755
No 215
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=2.2e-11 Score=129.97 Aligned_cols=193 Identities=16% Similarity=0.226 Sum_probs=150.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..++.++.+..+.+||...+..+..+.... +. . -. .++-|-..++.-++++|+--
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e-------r~-~----------------l~-~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDE-------RC-T----------------LY-SSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCc-------eE-E----------------EE-eEEEEeccCcEEEEEecccc
Confidence 688889999999999998866655431110 00 0 00 22222222556689999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY 281 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~ 281 (568)
+.|.+|+.... ..+. .+.+|.+.|.++.|+-+| .++++.|+|. +|+|++.+........-+|+..|.
T Consensus 155 ~~iivW~~~~d-----n~p~-~l~GHeG~iF~i~~s~dg------~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw 222 (967)
T KOG0974|consen 155 GEIIVWKPHED-----NKPI-RLKGHEGSIFSIVTSLDG------RYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW 222 (967)
T ss_pred ccEEEEecccc-----CCcc-eecccCCceEEEEEccCC------cEEEEEecCcceeeeecccccccCcccccccceeE
Confidence 99999998733 2333 677999999999999999 8999999999 999999987444446669999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 282 GLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 282 ~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
.++|+|. .|++++.|-+.++|+. .+.. +..+.+|. ..|+.++..+....++|++.||.++
T Consensus 223 ~~~~~~n--~i~t~gedctcrvW~~---------~~~~--------l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 223 ACCFLPN--RIITVGEDCTCRVWGV---------NGTQ--------LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK 283 (967)
T ss_pred EEEeccc--eeEEeccceEEEEEec---------ccce--------ehhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence 9999998 8999999999999976 3433 34777786 4699999999999999999999999
Q ss_pred EEEcCCCeeec
Q 008363 361 RFQLTAKAVEK 371 (568)
Q Consensus 361 iwd~~~~~~~~ 371 (568)
+|++.....+.
T Consensus 284 ~~~l~~r~~e~ 294 (967)
T KOG0974|consen 284 LWDLNGRGLEG 294 (967)
T ss_pred hhhhhcccccc
Confidence 99997665543
No 216
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.35 E-value=7.8e-11 Score=127.47 Aligned_cols=224 Identities=12% Similarity=0.137 Sum_probs=142.1
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+.....|...++ .++.++... .++++|+.||+|++|+......-. ...+..
T Consensus 1041 VAhL~Ehs~~v~-k~a~s~~~~---------s~FvsgS~DGtVKvW~~~k~~~~~-------------~s~rS~------ 1091 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVI-KLAVSSEHT---------SLFVSGSDDGTVKVWNLRKLEGEG-------------GSARSE------ 1091 (1431)
T ss_pred eehhhhcccccc-ceeecCCCC---------ceEEEecCCceEEEeeehhhhcCc-------------ceeeee------
Confidence 445667888777 777766543 699999999999999987611100 000100
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCC-C-eeEEEEccCCCCCCCCc
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTL-P-IRAVSWAPAESDSDSAN 248 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~-~-V~~v~~~p~~~~~~~~~ 248 (568)
.+..--...+ .++... +.++.+|+|+.||.|++.++..-... ....+.+....+.. . |..-+|.... .+ .
T Consensus 1092 ltys~~~sr~-~~vt~~--~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~---~S-~ 1164 (1431)
T KOG1240|consen 1092 LTYSPEGSRV-EKVTMC--GNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV---QS-H 1164 (1431)
T ss_pred EEEeccCCce-EEEEec--cCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccc---cc-e
Confidence 0111123344 677766 77889999999999999998752111 01122222222322 2 3333333332 12 3
Q ss_pred EEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 249 VILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.++.+..-+ |..||++.. ..++.+. ...+.|++++.+|.+.++++|+..|.+.+||+|- +.++
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~-~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF--------~~~i----- 1230 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMR-HDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF--------RVPI----- 1230 (1431)
T ss_pred eEEEEEeccceEEecchhh-hhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeec--------Ccee-----
Confidence 555555555 999999976 4444433 3457899999999999999999999999999974 2221
Q ss_pred cceEEE-ecCCCCEEEEEEecCC---CEEEEEe--CCCeEEEEEcCCCe
Q 008363 326 QGLHLV-NCSSFAIWSVQVSRLT---GMVAYCS--ADGTVHRFQLTAKA 368 (568)
Q Consensus 326 ~~l~~~-~~h~~~V~~l~~sp~~---~~l~s~s--~Dg~v~iwd~~~~~ 368 (568)
..+ ..+..+|..|..+|.. ...++++ ..+.|-+|++.++.
T Consensus 1231 ---~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1231 ---LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred ---ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence 222 2345778888777653 4555544 47889999998773
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.34 E-value=2.9e-10 Score=106.66 Aligned_cols=178 Identities=16% Similarity=0.216 Sum_probs=126.3
Q ss_pred CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc
Q 008363 132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV 211 (568)
Q Consensus 132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~ 211 (568)
..|.|||=....++.++ ....+| .+|... .++|++.- .+.|.||.+.
T Consensus 75 NkviIWDD~k~~~i~el---------------------------~f~~~I-~~V~l~----r~riVvvl-~~~I~VytF~ 121 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL---------------------------SFNSEI-KAVKLR----RDRIVVVL-ENKIYVYTFP 121 (346)
T ss_pred ceEEEEecccCcEEEEE---------------------------Eeccce-eeEEEc----CCeEEEEe-cCeEEEEEcC
Confidence 37999996556666553 334566 788866 34676665 5789999987
Q ss_pred CCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCC
Q 008363 212 ASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPD 288 (568)
Q Consensus 212 ~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~ 288 (568)
.. .+.++.+..-..+=--++..|.. +..+||-=|.. | |.|-|+..... +-..+..|...|.|++.+-+
T Consensus 122 ~n-----~k~l~~~et~~NPkGlC~~~~~~----~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~ 192 (346)
T KOG2111|consen 122 DN-----PKLLHVIETRSNPKGLCSLCPTS----NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ 192 (346)
T ss_pred CC-----hhheeeeecccCCCceEeecCCC----CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC
Confidence 43 25555554322221122334433 12456554554 6 99999987633 34677899999999999999
Q ss_pred CCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 289 PGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 289 ~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|..|++++..|+ |||||.. +|.++ ..+.. ....|++|+|||+..+|+++|.-|+|.||.+.
T Consensus 193 Gt~vATaStkGTLIRIFdt~--------~g~~l--------~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 193 GTLVATASTKGTLIRIFDTE--------DGTLL--------QELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred ccEEEEeccCcEEEEEEEcC--------CCcEe--------eeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 999999999887 7999994 47654 33332 34679999999999999999999999999996
Q ss_pred CC
Q 008363 366 AK 367 (568)
Q Consensus 366 ~~ 367 (568)
..
T Consensus 257 ~~ 258 (346)
T KOG2111|consen 257 DT 258 (346)
T ss_pred cC
Confidence 53
No 218
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.34 E-value=9.5e-10 Score=111.49 Aligned_cols=204 Identities=8% Similarity=0.101 Sum_probs=127.6
Q ss_pred EEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.+.|+|++ ++|++++ .++.|.+|++.+ +.....+. . ..+. .. |
T Consensus 84 ~i~~~~~g----------~~l~v~~~~~~~v~v~~~~~~g~~~~~~~--------------~---------~~~~-~~-~ 128 (330)
T PRK11028 84 HISTDHQG----------RFLFSASYNANCVSVSPLDKDGIPVAPIQ--------------I---------IEGL-EG-C 128 (330)
T ss_pred EEEECCCC----------CEEEEEEcCCCeEEEEEECCCCCCCCcee--------------e---------ccCC-Cc-c
Confidence 79999999 6777665 489999999974 22111110 0 0111 12 2
Q ss_pred eEEEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCC-CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-E
Q 008363 183 LTMEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSID-SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v 258 (568)
.+++++ |++++++++ ..++.|.+||+.+...... ......... ......++|+|++ ++++++.. ++ |
T Consensus 129 ~~~~~~--p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg------~~lyv~~~~~~~v 199 (330)
T PRK11028 129 HSANID--PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ------QYAYCVNELNSSV 199 (330)
T ss_pred cEeEeC--CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC------CEEEEEecCCCEE
Confidence 677877 888887554 4569999999975311000 000111212 2346789999999 77777765 55 9
Q ss_pred EEEECCCC--C-cceeeeCC------CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 259 KFWDIRDP--F-RPLWDIHP------APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 259 ~lwD~~~~--~-~~~~~~~~------h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
.+||+... . ..+..+.. +......+.|+|++++|+++.. ++.|.+|++... +..+ ..+
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~-------~~~~-----~~~ 267 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSED-------GSVL-----SFE 267 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC-------CCeE-----EEe
Confidence 99999742 1 22222221 1222346899999999999855 789999999531 1111 111
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT 365 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~ 365 (568)
...... ...+.+.|+|+|++|+++.. +++|.+|++.
T Consensus 268 ~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 268 GHQPTE-TQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEEecc-ccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 222211 23467899999999888775 8999999874
No 219
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=2.5e-10 Score=119.61 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=120.4
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+...+ .+.+|+ |+|+.|+..+.+ ..|.+||+.++ ... .+....+.+...+|+|++ ..|+
T Consensus 192 ~~~~~~v-~~p~wS--PDG~~la~~s~~~~~~~I~~~dl~~g------~~~-~l~~~~g~~~~~~~SPDG------~~la 255 (427)
T PRK02889 192 LSSPEPI-ISPAWS--PDGTKLAYVSFESKKPVVYVHDLATG------RRR-VVANFKGSNSAPAWSPDG------RTLA 255 (427)
T ss_pred ccCCCCc-ccceEc--CCCCEEEEEEccCCCcEEEEEECCCC------CEE-EeecCCCCccceEECCCC------CEEE
Confidence 3455666 889999 899999887643 35999999866 322 222334556789999999 5555
Q ss_pred -EEcCCC-EEEE--ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 252 -TAGHGG-LKFW--DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 252 -s~s~d~-v~lw--D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
+.+.++ ..|| |+.+. ....+..+........|+|||+.|+..+. +|...||.+.. .++..
T Consensus 256 ~~~~~~g~~~Iy~~d~~~~--~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~------~~g~~------- 320 (427)
T PRK02889 256 VALSRDGNSQIYTVNADGS--GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA------SGGAA------- 320 (427)
T ss_pred EEEccCCCceEEEEECCCC--CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC------CCCce-------
Confidence 566665 5555 45433 34455555555678899999999887765 56777776632 11221
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
..+..+.......+|+|+|++|+..+.++ .|.+||+.++....-... .. ....++++++..|...+.
T Consensus 321 --~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~-~~--~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 321 --QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT-TR--DESPSFAPNGRYILYATQ 390 (427)
T ss_pred --EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-CC--ccCceECCCCCEEEEEEe
Confidence 12222222334678999999998877664 699999987765433211 11 122367788888776544
No 220
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=2.5e-10 Score=120.20 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=160.7
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------c--------c
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------K--------E 155 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------~--------~ 155 (568)
.+.+|...+. .+.+.|... ...++.+++.||.|++||...+..++++..+.. + +
T Consensus 52 ~l~~~~a~l~-s~~~~~~~~-------~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s 123 (792)
T KOG1963|consen 52 SLEDHTAPLT-SVIVLPSSE-------NANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVS 123 (792)
T ss_pred hcccccCccc-eeeecCCCc-------cceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEee
Confidence 4567777455 888888763 235788999999999999999988887744332 0 0
Q ss_pred CCCCceEEEe-----------ecce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc
Q 008363 156 GTDPRFVKLE-----------PVFR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR 220 (568)
Q Consensus 156 ~~~~~~v~~~-----------~~~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~ 220 (568)
......+... .+.+ ......+|.. +.++..+ +.|.+.+ ...+..+.+|.+..... ...
T Consensus 124 ~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~--~~~I~~~--~~ge~~~-i~~~~~~~~~~v~~~~~--~~~ 196 (792)
T KOG1963|consen 124 VEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE--PKSIVDN--NSGEFKG-IVHMCKIHIYFVPKHTK--HTS 196 (792)
T ss_pred cccceeeeecccccccceeeeEeeeccccchhhhhhhcC--CccEEEc--CCceEEE-EEEeeeEEEEEecccce--eec
Confidence 0000000000 0000 0011122322 2566766 5554444 44456789999886421 001
Q ss_pred eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC---CCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 221 PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD---PFRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 221 ~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~---~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
....-..|.-.+++.+++|.+ .++|++..|| |.+|.--. .......++-|...|++++|+++|.+|++||
T Consensus 197 ~~~~~~~Htf~~t~~~~spn~------~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG 270 (792)
T KOG1963|consen 197 SRDITVHHTFNITCVALSPNE------RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG 270 (792)
T ss_pred cchhhhhhcccceeEEecccc------ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc
Confidence 111223467779999999999 8999999999 99995433 1134467778889999999999999999999
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
..+.+.+|.+.. ++. .-+..-.++|..+.++||+.+.+....|..|.+-...+..
T Consensus 271 ~E~VLv~Wq~~T--------~~k---------qfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~ 325 (792)
T KOG1963|consen 271 REGVLVLWQLET--------GKK---------QFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLE 325 (792)
T ss_pred cceEEEEEeecC--------CCc---------ccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchh
Confidence 999999999943 332 2445567899999999999999999999999999875443
No 221
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.2e-10 Score=117.13 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=124.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEe---CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL---GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT 178 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s---~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~ 178 (568)
.+...+|+|+| +.|+..+ .+..|.+|++.+++.... ....
T Consensus 200 ~~~~p~wSPDG----------~~la~~s~~~g~~~i~i~dl~~G~~~~l---------------------------~~~~ 242 (429)
T PRK03629 200 PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLANGAVRQV---------------------------ASFP 242 (429)
T ss_pred ceeeeEEcCCC----------CEEEEEEecCCCcEEEEEECCCCCeEEc---------------------------cCCC
Confidence 45599999999 6777654 345799999988653321 1112
Q ss_pred CccceEEEEccCCCCCEEEEE-eCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAG-CHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sg-s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
..+ ..+.|+ |+|+.|+.. +.+| .|.+||+.++ ... .+..+...+....|+|++ +.|+.++.
T Consensus 243 ~~~-~~~~~S--PDG~~La~~~~~~g~~~I~~~d~~tg------~~~-~lt~~~~~~~~~~wSPDG------~~I~f~s~ 306 (429)
T PRK03629 243 RHN-GAPAFS--PDGSKLAFALSKTGSLNLYVMDLASG------QIR-QVTDGRSNNTEPTWFPDS------QNLAYTSD 306 (429)
T ss_pred CCc-CCeEEC--CCCCEEEEEEcCCCCcEEEEEECCCC------CEE-EccCCCCCcCceEECCCC------CEEEEEeC
Confidence 223 567899 899888765 4455 4888898765 333 333445567889999999 77766655
Q ss_pred -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
++ |.++|+.++. ...+..+........|+|||++|+..+.+ ..|++||+.. |..
T Consensus 307 ~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~--------g~~--------- 367 (429)
T PRK03629 307 QAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV--------- 367 (429)
T ss_pred CCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC--------CCe---------
Confidence 33 4555666542 22333334445678999999999887553 3588888843 332
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCe---EEEEEcCC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGT---VHRFQLTA 366 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~---v~iwd~~~ 366 (568)
..+... .......|+|+|++|+.++.++. +.++++..
T Consensus 368 ~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 368 QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG 407 (429)
T ss_pred EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 222211 22346789999999999998865 66667643
No 222
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=4.1e-10 Score=117.97 Aligned_cols=189 Identities=15% Similarity=0.120 Sum_probs=121.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.. .+.+.+|+|++ +.|+..+.+ ..|.+||+.+++....
T Consensus 193 ~~~~-~v~~p~wSPDG----------~~la~~s~~~~~~~I~~~dl~~g~~~~l-------------------------- 235 (427)
T PRK02889 193 SSPE-PIISPAWSPDG----------TKLAYVSFESKKPVVYVHDLATGRRRVV-------------------------- 235 (427)
T ss_pred cCCC-CcccceEcCCC----------CEEEEEEccCCCcEEEEEECCCCCEEEe--------------------------
Confidence 4555 44589999999 678777643 3599999988764322
Q ss_pred ccCCcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
......+ .+.+|+ |+|+.|+ +.+.+|...||.+.... .....+..|...+....|+|+| ..|+.
T Consensus 236 -~~~~g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~d~~~-----~~~~~lt~~~~~~~~~~wSpDG------~~l~f 300 (427)
T PRK02889 236 -ANFKGSN-SAPAWS--PDGRTLAVALSRDGNSQIYTVNADG-----SGLRRLTQSSGIDTEPFFSPDG------RSIYF 300 (427)
T ss_pred -ecCCCCc-cceEEC--CCCCEEEEEEccCCCceEEEEECCC-----CCcEECCCCCCCCcCeEEcCCC------CEEEE
Confidence 1122333 678999 8898876 56778887887765321 2234454555566778999999 66665
Q ss_pred EcC-CC-EEEEEC--CCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCccc
Q 008363 253 AGH-GG-LKFWDI--RDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 253 ~s~-d~-v~lwD~--~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.+. ++ ..||.+ .++......+. .......+|+|||++|+..+.++ .|++||+.. |+.
T Consensus 301 ~s~~~g~~~Iy~~~~~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~--------g~~------ 364 (427)
T PRK02889 301 TSDRGGAPQIYRMPASGGAAQRVTFT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLAT--------GQV------ 364 (427)
T ss_pred EecCCCCcEEEEEECCCCceEEEecC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCC--------CCe------
Confidence 554 34 555544 44322122222 33345688999999999876644 699999843 332
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
..+..+ .....+.|+|+|++|+.++.++
T Consensus 365 ---~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 365 ---TALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred ---EEccCC-CCccCceECCCCCEEEEEEecC
Confidence 122222 2346789999999888887554
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.7e-10 Score=116.84 Aligned_cols=198 Identities=8% Similarity=0.066 Sum_probs=130.2
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..|.. .+...+|+|++ +.|+..+. +..|.+||+.+++... +
T Consensus 198 t~~~~-~v~~p~wSpDG----------~~lay~s~~~g~~~i~~~dl~~g~~~~-l------------------------ 241 (435)
T PRK05137 198 TDGSS-LVLTPRFSPNR----------QEITYMSYANGRPRVYLLDLETGQREL-V------------------------ 241 (435)
T ss_pred ecCCC-CeEeeEECCCC----------CEEEEEEecCCCCEEEEEECCCCcEEE-e------------------------
Confidence 35555 45599999999 67777653 4689999998865432 2
Q ss_pred cccCCcCccceEEEEccCCCCCEEE-EEeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..+...+ .+.+|+ |+|+.|+ +.+.+|. |.+||+.++ . ...+..+........|+|++ ..
T Consensus 242 --~~~~g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~d~~~~------~-~~~Lt~~~~~~~~~~~spDG------~~ 303 (435)
T PRK05137 242 --GNFPGMT-FAPRFS--PDGRKVVMSLSQGGNTDIYTMDLRSG------T-TTRLTDSPAIDTSPSYSPDG------SQ 303 (435)
T ss_pred --ecCCCcc-cCcEEC--CCCCEEEEEEecCCCceEEEEECCCC------c-eEEccCCCCccCceeEcCCC------CE
Confidence 2334445 778999 8898775 5556665 666677654 2 34455566667789999999 67
Q ss_pred EEEEcC-C--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccC
Q 008363 250 ILTAGH-G--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 250 las~s~-d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
|+..+. + . |++||+.++ . ...+..+...+....|+|+|+.|+..+.+ ..|.+||+.. +..
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~-~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--------~~~--- 370 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGS-N-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--------SGE--- 370 (435)
T ss_pred EEEEECCCCCCeEEEEECCCC-C-eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--------Cce---
Confidence 766653 2 2 888898754 2 22333334556778999999999887653 3577788632 111
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEeCC------CeEEEEEcCCC
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD------GTVHRFQLTAK 367 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D------g~v~iwd~~~~ 367 (568)
..+. ....+..+.|+|+|++|+..+.+ ..|+++++..+
T Consensus 371 ------~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 371 ------RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ------Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 1222 22346678999999988776643 25777777544
No 224
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.4e-10 Score=111.48 Aligned_cols=166 Identities=16% Similarity=0.135 Sum_probs=132.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCC--CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGN--GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~d--g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.|.-+|..+ .++|+|+.. ..+.|||+... .+.+..........+-.+.+|+
T Consensus 153 ~~r~~~~~p---------~Iva~GGke~~n~lkiwdle~~--~qiw~aKNvpnD~L~LrVPvW~---------------- 205 (412)
T KOG3881|consen 153 DVRQTDTDP---------YIVATGGKENINELKIWDLEQS--KQIWSAKNVPNDRLGLRVPVWI---------------- 205 (412)
T ss_pred eeccCCCCC---------ceEecCchhcccceeeeecccc--eeeeeccCCCCccccceeeeee----------------
Confidence 677777765 788889998 88999999985 4444333322333333444444
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
+.+.|-+..+...||+++.-+.|++||.+.+ .+|+..|.--+.+|+++...|.+ ++|++|..-+ +..|
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~q-----RRPV~~fd~~E~~is~~~l~p~g------n~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQ-----RRPVAQFDFLENPISSTGLTPSG------NFIYTGNTKGQLAKF 274 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCccc-----CcceeEeccccCcceeeeecCCC------cEEEEecccchhhee
Confidence 5666663323679999999999999999866 47888888889999999999999 8999999988 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
|++.+......+.+..+.|.+|..+|.+++|+++|-|+.|||+|+.+
T Consensus 275 D~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 275 DLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 99988444455888899999999999999999999999999999953
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=1.1e-10 Score=108.23 Aligned_cols=222 Identities=14% Similarity=0.229 Sum_probs=153.1
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.+++..|.+ . +.+.|+..... . --.|+-+-.+|.|.++..........+.+-+. .
T Consensus 63 ~~q~~dts~-~-~dm~w~~~~~~-----g-~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~-----------------~ 117 (339)
T KOG0280|consen 63 TLQCTDTST-E-FDMLWRIRETD-----G-DFNLLDAHARGQIQLYRNDEDESSVHLRGLSS-----------------K 117 (339)
T ss_pred eeeeecccc-c-ceeeeeeccCC-----c-cceeeeccccceEEEEeeccceeeeeecccch-----------------h
Confidence 344566666 3 37888753210 0 02677778889999998776444333322110 0
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.. .... +.+++|+ +.+..++++-.+|.+.+-+..... .+.++.+++|.-.++...|+... |+++.
T Consensus 118 ki---~~~~-~lslD~~--~~~~~i~vs~s~G~~~~v~~t~~~----le~vq~wk~He~E~Wta~f~~~~-----pnlvy 182 (339)
T KOG0280|consen 118 KI---SVVE-ALSLDIS--TSGTKIFVSDSRGSISGVYETEMV----LEKVQTWKVHEFEAWTAKFSDKE-----PNLVY 182 (339)
T ss_pred hh---hhee-eeEEEee--ccCceEEEEcCCCcEEEEecceee----eeecccccccceeeeeeecccCC-----CceEE
Confidence 00 0011 3789999 667789999999999966655442 25556889999999999999886 69999
Q ss_pred EEcCCC-EEEEECCCCCcceee-eCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWD-IHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~-~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+||+|+ +..||+|.+...++. ..-|...|.+|.-+| .+.+|++|+.|-.|++||.|++. +++
T Consensus 183 tGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl-------- 247 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPL-------- 247 (339)
T ss_pred ecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------Ccc--------
Confidence 999999 999999966555544 557888899998876 57899999999999999999754 443
Q ss_pred EEEecCCCCEEEEEEecCC--CEEEEEeCCCeEEEEEcCCCeee
Q 008363 329 HLVNCSSFAIWSVQVSRLT--GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~--~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.. ..-.+.||.+.++|.. .+|++|- -.-.+|-+.+....+
T Consensus 248 ~~-~~v~GGVWRi~~~p~~~~~lL~~CM-h~G~ki~~~~~~~~e 289 (339)
T KOG0280|consen 248 FK-AKVGGGVWRIKHHPEIFHRLLAACM-HNGAKILDSSDKVLE 289 (339)
T ss_pred cc-CccccceEEEEecchhhhHHHHHHH-hcCceEEEecccccc
Confidence 21 1233889999999974 3444444 444677777655444
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=7.1e-10 Score=116.52 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=127.1
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.|.. .+...+|+|++ +.|+.++. +..|.+||+.+++....
T Consensus 201 ~~~~-~v~~p~wSpDg----------~~la~~s~~~~~~~l~~~dl~~g~~~~l-------------------------- 243 (433)
T PRK04922 201 RSAE-PILSPAWSPDG----------KKLAYVSFERGRSAIYVQDLATGQRELV-------------------------- 243 (433)
T ss_pred cCCC-ccccccCCCCC----------CEEEEEecCCCCcEEEEEECCCCCEEEe--------------------------
Confidence 4444 44489999999 78887764 34699999988654321
Q ss_pred ccCCcCccceEEEEccCCCCCEEE-EEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..+.... .+++|+ |+|+.|+ +.+.+| .|.+||+.++ . +..+..|......++|+|++ ..|
T Consensus 244 -~~~~g~~-~~~~~S--pDG~~l~~~~s~~g~~~Iy~~d~~~g------~-~~~lt~~~~~~~~~~~spDG------~~l 306 (433)
T PRK04922 244 -ASFRGIN-GAPSFS--PDGRRLALTLSRDGNPEIYVMDLGSR------Q-LTRLTNHFGIDTEPTWAPDG------KSI 306 (433)
T ss_pred -ccCCCCc-cCceEC--CCCCEEEEEEeCCCCceEEEEECCCC------C-eEECccCCCCccceEECCCC------CEE
Confidence 2222333 578999 8898775 455566 5889998765 2 23444555556788999999 677
Q ss_pred EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCc
Q 008363 251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
+.++. ++ |.++|+.++.. ..+..+......++|+|||++|+..+.++ .|.+||+.. |+.
T Consensus 307 ~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~--------g~~---- 372 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST--------GSV---- 372 (433)
T ss_pred EEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC--------CCe----
Confidence 66654 33 77777765522 22222233455789999999998875433 689999842 332
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCC
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTA 366 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~ 366 (568)
..+. +........|+|+|++|+..+.+ +.|.++++..
T Consensus 373 -----~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 373 -----RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -----EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 1222 22234567899999988877653 3577777754
No 227
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.29 E-value=4.7e-11 Score=122.68 Aligned_cols=211 Identities=17% Similarity=0.317 Sum_probs=160.5
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.-.+++. ++..+|.| +-+|.++.-| +.+-|+.. +...+-+
T Consensus 22 ~v~~~~~-a~si~p~g----------rdi~lAsr~g-l~i~dld~p~~ppr~l--------------------------- 62 (1081)
T KOG0309|consen 22 KVDGGFN-AVSINPSG----------RDIVLASRQG-LYIIDLDDPFTPPRWL--------------------------- 62 (1081)
T ss_pred EecCccc-ceeecccc----------chhhhhhhcC-eEEEeccCCCCCceee---------------------------
Confidence 3344344 89999999 5677777766 56667766 2222221
Q ss_pred CCc--CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 176 GGT--QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 176 ~h~--~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.|. -.| -.+.|+|++.-.+-++......-.+|++..... ......+.+|+..|+++.|+|.. |.++|++
T Consensus 63 ~h~tpw~v-ad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~---~aIef~lhghsraitd~n~~~q~-----pdVlatc 133 (1081)
T KOG0309|consen 63 HHITPWQV-ADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS---NAIEFVLHGHSRAITDINFNPQH-----PDVLATC 133 (1081)
T ss_pred eccCcchh-cceecccCCCCceeEEecCcchhhhhhhhcCCc---cceEEEEecCccceeccccCCCC-----Ccceeec
Confidence 111 123 567899888777777777777888999875422 23444667999999999999986 7999999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+.|. |..||++++..++..+.........|.|+--...+++.+..+.|++||+|... .++..++
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---------------~pl~s~K 198 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---------------TPLCSLK 198 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCC---------------cceEEec
Confidence 9999 99999999988888777666667889999866667777888899999998633 4467899
Q ss_pred cCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeee
Q 008363 333 CSSFAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 333 ~h~~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+|...|+.+.|... ...+.+++.||+|++||......+
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 99999999999876 478999999999999999765444
No 228
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.28 E-value=1.2e-11 Score=120.88 Aligned_cols=161 Identities=18% Similarity=0.277 Sum_probs=132.8
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC---------------------------------CCCceeEEeeCC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS---------------------------------IDSRPLLCFSAD 228 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~---------------------------------~~~~~~~~~~~h 228 (568)
|+.+.+. .+|++|+.|+.-|.|..+|..+..+. ..+..+++++.|
T Consensus 132 PY~~~yt--rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHClk~~ 209 (545)
T KOG1272|consen 132 PYHLDYT--RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCLKRH 209 (545)
T ss_pred Ceeeeec--CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeehhhc
Confidence 4788988 89999999999999999999877541 112233333333
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
..|..+.|.|.. .+|++++..| ++.-|+.++ ..+..+..-.+.+..++-+|-...+-+|...|+|.+|...
T Consensus 210 -~~v~rLeFLPyH------fLL~~~~~~G~L~Y~DVS~G-klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 210 -IRVARLEFLPYH------FLLVAASEAGFLKYQDVSTG-KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred -Cchhhhcccchh------heeeecccCCceEEEeechh-hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 447888999997 7888888888 999999998 7777777777888999999999999999999999999983
Q ss_pred ccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
. . .++..+-+|.++|.+|++.++|.|++|.+.|..|+|||+....
T Consensus 282 s--------k--------ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 282 S--------K--------EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred C--------c--------chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 3 2 3445778899999999999999999999999999999997654
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=1.4e-09 Score=114.39 Aligned_cols=185 Identities=12% Similarity=0.117 Sum_probs=123.4
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI- 250 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l- 250 (568)
..|...+ .+.+|+ |+|+.|+..+. +..|.+||+.++ .. ..+..+.+.+...+|+|+| ..|
T Consensus 198 t~~~~~v-~~p~wS--pDG~~lay~s~~~g~~~i~~~dl~~g------~~-~~l~~~~g~~~~~~~SPDG------~~la 261 (435)
T PRK05137 198 TDGSSLV-LTPRFS--PNRQEITYMSYANGRPRVYLLDLETG------QR-ELVGNFPGMTFAPRFSPDG------RKVV 261 (435)
T ss_pred ecCCCCe-EeeEEC--CCCCEEEEEEecCCCCEEEEEECCCC------cE-EEeecCCCcccCcEECCCC------CEEE
Confidence 4566677 899999 89998888764 468999999866 22 2344556677889999999 555
Q ss_pred EEEcCCC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCcc
Q 008363 251 LTAGHGG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 251 as~s~d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
++.+.++ |.+||+.++ .+..+..+........|+|||+.|+..+. +| .|++||+.. +..
T Consensus 262 ~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--------~~~----- 326 (435)
T PRK05137 262 MSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--------SNP----- 326 (435)
T ss_pred EEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--------CCe-----
Confidence 4555443 888898865 33445556666678999999999988764 33 577777632 222
Q ss_pred ccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
..+..+...+....|+|+|++|+..+.+ ..|.+|++.++........ ......++++++..|....
T Consensus 327 ----~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~---~~~~~p~~spDG~~i~~~~ 395 (435)
T PRK05137 327 ----RRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG---FLVEGPTWAPNGRVIMFFR 395 (435)
T ss_pred ----EEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCC---CCCCCCeECCCCCEEEEEE
Confidence 2333344556778999999999887654 3688888865543222111 1123346778887776543
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.26 E-value=2.2e-10 Score=108.93 Aligned_cols=181 Identities=12% Similarity=0.109 Sum_probs=128.3
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD 262 (568)
..++|+++ -..+|++..|-+|++|+-... .+...-......|++++|-|.+ ...|+.|...+|.||.
T Consensus 102 r~~aWhqH--~~~fava~nddvVriy~ksst------~pt~Lks~sQrnvtclawRPls-----aselavgCr~gIciW~ 168 (445)
T KOG2139|consen 102 RGVAWHQH--IIAFAVATNDDVVRIYDKSST------CPTKLKSVSQRNVTCLAWRPLS-----ASELAVGCRAGICIWS 168 (445)
T ss_pred eeEeechh--hhhhhhhccCcEEEEeccCCC------CCceecchhhcceeEEEeccCC-----cceeeeeecceeEEEE
Confidence 67899943 446889999999999997754 2211112235679999999997 3789999999999997
Q ss_pred CCCCC---cc----------eeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 263 IRDPF---RP----------LWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 263 ~~~~~---~~----------~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
..... ++ +....+| .+|+++.|.+||..+++++. |..|.|||... |..+ ++
T Consensus 169 ~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdt--------g~~~------pL 233 (445)
T KOG2139|consen 169 DSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDT--------GQKI------PL 233 (445)
T ss_pred cCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCC--------CCcc------cc
Confidence 75432 11 1112244 57999999999999999876 78999999954 4332 12
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee-eccCCCCCcceeeeecccCCCCceEE
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV-EKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
. ...-+.+.-+.|||++.+|+.++-|+..++|+...... ++-.-. ..+...+.++++|..|.+
T Consensus 234 ~--~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg--sgrvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 234 I--PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG--SGRVQTACWSPCGSFLLF 297 (445)
T ss_pred c--ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc--CCceeeeeecCCCCEEEE
Confidence 2 23346788899999999999999999999996654322 221111 125556678888888765
No 231
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=4.8e-10 Score=113.36 Aligned_cols=205 Identities=13% Similarity=0.135 Sum_probs=149.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEcc--CCCCCEEEEEe
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWST--SPPHDYLLAGC 200 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~--~~~g~~l~sgs 200 (568)
.++|....||.++||+...++....+.+....+++ ++...|.... ....... .++.|.. ..+...|+-|.
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t--~~~~~w~L~~-----~~s~~k~-~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGT--CTYTKWGLSA-----DYSPMKW-LSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccchhccCc--ceeEEEEEEe-----ccchHHH-HhHHHHhhccCCceEEEeec
Confidence 79999999999999999998888777554433322 2222333110 0000001 1111110 13445888999
Q ss_pred CCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC
Q 008363 201 HDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP 277 (568)
Q Consensus 201 ~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~ 277 (568)
..|.|.+|++..+ +....+ ..|.+.|.++.++.+- ..|.|++.|. +..|+.... .........+
T Consensus 78 ~~g~v~~ys~~~g------~it~~~st~~h~~~v~~~~~~~~~------~ciyS~~ad~~v~~~~~~~~-~~~~~~~~~~ 144 (541)
T KOG4547|consen 78 PQGSVLLYSVAGG------EITAKLSTDKHYGNVNEILDAQRL------GCIYSVGADLKVVYILEKEK-VIIRIWKEQK 144 (541)
T ss_pred CCccEEEEEecCC------eEEEEEecCCCCCcceeeeccccc------CceEecCCceeEEEEecccc-eeeeeeccCC
Confidence 9999999999877 444444 4799999999999887 7999999999 999999976 6667777778
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC-----CCEE-E
Q 008363 278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL-----TGMV-A 351 (568)
Q Consensus 278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~-----~~~l-~ 351 (568)
..+.+++.+|||..|++++ +.|.+||+. +++. +..|.||.++|.++.|.-. |.++ .
T Consensus 145 ~~~~sl~is~D~~~l~~as--~~ik~~~~~--------~kev--------v~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS--RQIKVLDIE--------TKEV--------VITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred CccceEEEcCCCCEEEecc--ceEEEEEcc--------CceE--------EEEecCCCcceEEEEEEEeccccccceeee
Confidence 8899999999999999886 579999994 3544 4799999999999999887 5554 4
Q ss_pred EEeCCCeEEEEEcCC
Q 008363 352 YCSADGTVHRFQLTA 366 (568)
Q Consensus 352 s~s~Dg~v~iwd~~~ 366 (568)
+...+..+.+|-+..
T Consensus 207 sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 207 SAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeEEEEEc
Confidence 455677788887754
No 232
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=1.6e-09 Score=113.87 Aligned_cols=185 Identities=16% Similarity=0.144 Sum_probs=117.8
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI- 250 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l- 250 (568)
..+...+ .+..|+ |+|+.|+..+.+ ..|.+||+.++ ... .+..+.+...+++|+|++ ..|
T Consensus 200 t~~~~~v-~~p~wS--pDg~~la~~s~~~~~~~l~~~dl~~g------~~~-~l~~~~g~~~~~~~SpDG------~~l~ 263 (433)
T PRK04922 200 LRSAEPI-LSPAWS--PDGKKLAYVSFERGRSAIYVQDLATG------QRE-LVASFRGINGAPSFSPDG------RRLA 263 (433)
T ss_pred ecCCCcc-ccccCC--CCCCEEEEEecCCCCcEEEEEECCCC------CEE-EeccCCCCccCceECCCC------CEEE
Confidence 3445566 889999 899999887743 46999999765 222 222334455678999999 555
Q ss_pred EEEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCcc
Q 008363 251 LTAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 251 as~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
++.+.+ . |++||+.++ . +..+..+......++|+|||+.|+.++. +|. |+++|+. +|+.
T Consensus 264 ~~~s~~g~~~Iy~~d~~~g-~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~--------~g~~----- 328 (433)
T PRK04922 264 LTLSRDGNPEIYVMDLGSR-Q-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAAS--------GGSA----- 328 (433)
T ss_pred EEEeCCCCceEEEEECCCC-C-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCe-----
Confidence 454443 3 999999876 2 3345455555578999999999988765 555 5555552 2322
Q ss_pred ccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
..+..+......++|+|+|++|+..+.++ .|.+||+.++....-.... .. .-.++++++..+...+
T Consensus 329 ----~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~-~~--~~p~~spdG~~i~~~s 397 (433)
T PRK04922 329 ----ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS-LD--ESPSFAPNGSMVLYAT 397 (433)
T ss_pred ----EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC-CC--CCceECCCCCEEEEEE
Confidence 12222333345689999999988776543 6999999876554321111 11 1125677887766543
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.24 E-value=4.4e-09 Score=110.18 Aligned_cols=187 Identities=13% Similarity=0.174 Sum_probs=119.0
Q ss_pred CcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+...+ .+.+|+ |+|+.|+..+. +..|.+|++.++.. +.+..+. +.+..++|+|+| ..|+..
T Consensus 197 ~~~~~-~~p~wS--PDG~~la~~s~~~g~~~i~i~dl~~G~~----~~l~~~~---~~~~~~~~SPDG------~~La~~ 260 (429)
T PRK03629 197 SPQPL-MSPAWS--PDGSKLAYVTFESGRSALVIQTLANGAV----RQVASFP---RHNGAPAFSPDG------SKLAFA 260 (429)
T ss_pred CCCce-eeeEEc--CCCCEEEEEEecCCCcEEEEEECCCCCe----EEccCCC---CCcCCeEECCCC------CEEEEE
Confidence 34455 889999 89998886542 35799999876621 3333333 335568999999 666643
Q ss_pred -cCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 254 -GHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 254 -s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+.+ . |++||+.++ . +..+..+...+....|+|||+.|+.++. ++...||.+.. .+|..
T Consensus 261 ~~~~g~~~I~~~d~~tg-~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~------~~g~~--------- 323 (429)
T PRK03629 261 LSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI------NGGAP--------- 323 (429)
T ss_pred EcCCCCcEEEEEECCCC-C-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC------CCCCe---------
Confidence 333 3 999999875 3 2334444556788999999999988776 45555554321 12322
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
..+..+...+....|+|+|++|+..+.+ ..|.+||+.++....-.... .....++++||..|...+..
T Consensus 324 ~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~~i~~~s~~ 394 (429)
T PRK03629 324 QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGTMVIYSSSQ 394 (429)
T ss_pred EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCCEEEEEEcC
Confidence 2333344445678999999988877654 35888999877654321111 11233678888887776543
No 234
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.15 E-value=1.1e-09 Score=101.70 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=138.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
++.|++.+ ..++++..+|.+.+-+...+.... .+....|.... +.
T Consensus 126 slD~~~~~----------~~i~vs~s~G~~~~v~~t~~~le~------------------------vq~wk~He~E~-Wt 170 (339)
T KOG0280|consen 126 SLDISTSG----------TKIFVSDSRGSISGVYETEMVLEK------------------------VQTWKVHEFEA-WT 170 (339)
T ss_pred EEEeeccC----------ceEEEEcCCCcEEEEecceeeeee------------------------cccccccceee-ee
Confidence 77888888 678888888988855544432221 01126777776 88
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC
Q 008363 185 MEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDI 263 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~ 263 (568)
..|+-.. .+++.+|+.||.+..||++... ....+..+.|...|.+|.-+|.. |.+|+||+.|- |++||.
T Consensus 171 a~f~~~~-pnlvytGgDD~~l~~~D~R~p~----~~i~~n~kvH~~GV~SI~ss~~~-----~~~I~TGsYDe~i~~~Dt 240 (339)
T KOG0280|consen 171 AKFSDKE-PNLVYTGGDDGSLSCWDIRIPK----TFIWHNSKVHTSGVVSIYSSPPK-----PTYIATGSYDECIRVLDT 240 (339)
T ss_pred eecccCC-CceEEecCCCceEEEEEecCCc----ceeeecceeeecceEEEecCCCC-----CceEEEeccccceeeeeh
Confidence 8887443 3699999999999999999431 12333456789999999988875 68999999998 999999
Q ss_pred CCCCcceeeeCCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 264 RDPFRPLWDIHPAPKFIYGLDWLPDPG--CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 264 ~~~~~~~~~~~~h~~~i~~l~~sp~~~--~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
|+-.+|+..-. -.+.|..+.++|.-. .|+++ .-+-.+|-+..+.. ++ + ...+.....|.+-++.-
T Consensus 241 Rnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~------~e-~----~~~~~s~~~hdSl~YG~ 307 (339)
T KOG0280|consen 241 RNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKV------LE-F----QIVLPSDKIHDSLCYGG 307 (339)
T ss_pred hcccCccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccc------cc-h----heeeeccccccceeecc
Confidence 98778885543 357899999999533 33333 33336677764421 22 1 02334666787777777
Q ss_pred EEecCCCEEEEEe-CCCeEE-EEEc
Q 008363 342 QVSRLTGMVAYCS-ADGTVH-RFQL 364 (568)
Q Consensus 342 ~~sp~~~~l~s~s-~Dg~v~-iwd~ 364 (568)
.|.....+|+||+ .|..++ +|-.
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred ccccccceeeeeeccccceeeeeee
Confidence 8855557899987 465544 6644
No 235
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=1.3e-08 Score=106.73 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=122.0
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.. .+...+|+|++ ++|+.++.+ ..|++||+.++.....
T Consensus 187 ~~~~-~~~~p~~Spdg----------~~la~~~~~~~~~~i~v~d~~~g~~~~~-------------------------- 229 (417)
T TIGR02800 187 RSRE-PILSPAWSPDG----------QKLAYVSFESGKPEIYVQDLATGQREKV-------------------------- 229 (417)
T ss_pred cCCC-ceecccCCCCC----------CEEEEEEcCCCCcEEEEEECCCCCEEEe--------------------------
Confidence 3444 45589999999 788877644 4799999988654322
Q ss_pred ccCCcCccceEEEEccCCCCCEEEE-EeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLA-GCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~s-gs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..+...+ .++.|+ |+|+.|+. .+.++ .|.+||+.++ . ...+..+........|+|++ ..|
T Consensus 230 -~~~~~~~-~~~~~s--pDg~~l~~~~~~~~~~~i~~~d~~~~------~-~~~l~~~~~~~~~~~~s~dg------~~l 292 (417)
T TIGR02800 230 -ASFPGMN-GAPAFS--PDGSKLAVSLSKDGNPDIYVMDLDGK------Q-LTRLTNGPGIDTEPSWSPDG------KSI 292 (417)
T ss_pred -ecCCCCc-cceEEC--CCCCEEEEEECCCCCccEEEEECCCC------C-EEECCCCCCCCCCEEECCCC------CEE
Confidence 2233344 678998 88887764 44444 5888888755 2 23333445555677999998 666
Q ss_pred EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCc
Q 008363 251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
+.++. ++ |.++|+.+.. ...+..+...+..+.|+|++++|+.++.++ .|.+||+.. +..
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~--------~~~---- 358 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG--------GGE---- 358 (417)
T ss_pred EEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC--------CCe----
Confidence 65543 32 8888887652 233333455677889999999999988765 788888843 211
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
..+... .......|+|++++|+..+.++
T Consensus 359 -----~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 359 -----RVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred -----EEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 122221 2234568999999888877664
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.7e-08 Score=105.33 Aligned_cols=204 Identities=13% Similarity=0.077 Sum_probs=120.9
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..-+|+|+|. .+.++++...+| .|.+.++.+++..+. ....+..
T Consensus 188 ~sP~wSPDG~-------~~~~~y~S~~~g~~~I~~~~l~~g~~~~l---------------------------t~~~g~~ 233 (428)
T PRK01029 188 ITPTWMHIGS-------GFPYLYVSYKLGVPKIFLGSLENPAGKKI---------------------------LALQGNQ 233 (428)
T ss_pred ccceEccCCC-------ceEEEEEEccCCCceEEEEECCCCCceEe---------------------------ecCCCCc
Confidence 3779999983 001333444444 477778877653322 1122233
Q ss_pred ceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-C
Q 008363 182 PLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-H 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~ 255 (568)
...+|+ |||+.|+..+. |..+.+|++..+.. ..+......+.+.....+|+|+| ..|+..+ .
T Consensus 234 -~~p~wS--PDG~~Laf~s~~~g~~di~~~~~~~~~g~~---g~~~~lt~~~~~~~~~p~wSPDG------~~Laf~s~~ 301 (428)
T PRK01029 234 -LMPTFS--PRKKLLAFISDRYGNPDLFIQSFSLETGAI---GKPRRLLNEAFGTQGNPSFSPDG------TRLVFVSNK 301 (428)
T ss_pred -cceEEC--CCCCEEEEEECCCCCcceeEEEeecccCCC---CcceEeecCCCCCcCCeEECCCC------CEEEEEECC
Confidence 567899 99988886553 33345567654311 12333332333445678999999 6666554 3
Q ss_pred CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 256 GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 256 d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
++ |.++++.........+..+...+....|+|||+.|+..+.+ ..|++||+.. |+. .
T Consensus 302 ~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~--------g~~---------~ 364 (428)
T PRK01029 302 DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT--------GRD---------Y 364 (428)
T ss_pred CCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC--------CCe---------E
Confidence 44 44445542212233444445567789999999999877553 4689999843 433 2
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeC---CCeEEEEEcCCCeee
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSA---DGTVHRFQLTAKAVE 370 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~---Dg~v~iwd~~~~~~~ 370 (568)
.+......+....|+|+|++|+..+. ...|++|++.++...
T Consensus 365 ~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 365 QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 33323345677899999988875543 356888888765543
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.12 E-value=2.1e-08 Score=105.13 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=120.7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL- 251 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la- 251 (568)
.+...+ .+.+|+ |+|++|+.++.+ ..|.+||+.++ .. ..+..+.+.+.+++|+|++ +.|+
T Consensus 187 ~~~~~~-~~p~~S--pdg~~la~~~~~~~~~~i~v~d~~~g------~~-~~~~~~~~~~~~~~~spDg------~~l~~ 250 (417)
T TIGR02800 187 RSREPI-LSPAWS--PDGQKLAYVSFESGKPEIYVQDLATG------QR-EKVASFPGMNGAPAFSPDG------SKLAV 250 (417)
T ss_pred cCCCce-ecccCC--CCCCEEEEEEcCCCCcEEEEEECCCC------CE-EEeecCCCCccceEECCCC------CEEEE
Confidence 344455 788899 899999887754 47999999865 22 2233455667789999998 5554
Q ss_pred EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccc
Q 008363 252 TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 252 s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
+.+.+ . |++||+.++ ....+..+........|+|+|+.|+.++. ++ .|+++|+.. ++.
T Consensus 251 ~~~~~~~~~i~~~d~~~~--~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~--------~~~------ 314 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGK--QLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADG--------GEV------ 314 (417)
T ss_pred EECCCCCccEEEEECCCC--CEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCC--------CCE------
Confidence 54443 3 999999865 23334444444567899999999887765 33 577777632 222
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
..+..+...+..+.|+|++++|+.++.++ .|.+||+.++......... . ....++++++..|.....
T Consensus 315 ---~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~--~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 315 ---RRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-L--DESPSFAPNGRMILYATT 384 (417)
T ss_pred ---EEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-C--CCCceECCCCCEEEEEEe
Confidence 23444555667889999999999988876 7999998875443221111 1 112256777777665443
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.10 E-value=1.5e-09 Score=102.82 Aligned_cols=233 Identities=19% Similarity=0.252 Sum_probs=148.4
Q ss_pred CceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 100 GKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 100 ~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..++.+|.|...| .+||+|..+|.|.++.-.... ....++.|. |.+..+..
T Consensus 25 adiis~vef~~~G----------e~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshe-------------pEFDYLkS- 80 (433)
T KOG1354|consen 25 ADIISAVEFDHYG----------ERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHE-------------PEFDYLKS- 80 (433)
T ss_pred hcceeeEEeeccc----------ceEeecCCCCeEEEeecccccccceeeeeeeeccC-------------cccchhhh-
Confidence 3477799999999 799999999999999755421 111222221 11111111
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-----------------------------CCceeEEe
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-----------------------------DSRPLLCF 225 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-----------------------------~~~~~~~~ 225 (568)
..-...| ..+.|.+..+...++..+.|.+|++|.+....... ...|.+.+
T Consensus 81 leieEKi-nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~ 159 (433)
T KOG1354|consen 81 LEIEEKI-NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY 159 (433)
T ss_pred hhhhhhh-hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec
Confidence 1123445 78899966566688888899999999987543211 01122322
Q ss_pred -eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--eeeCCC-----CCCeEEEEEcCC-CCEEEEEe
Q 008363 226 -SADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WDIHPA-----PKFIYGLDWLPD-PGCVILSF 296 (568)
Q Consensus 226 -~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~~~~h-----~~~i~~l~~sp~-~~~l~s~~ 296 (568)
.+|.--|++|.++.+. ..++|+.+=.|-+|.+.-..+.. ..+.++ ..-|++..|+|. ...++-++
T Consensus 160 aNaHtyhiNSIS~NsD~------Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS 233 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDK------ETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS 233 (433)
T ss_pred cccceeEeeeeeecCcc------ceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec
Confidence 3688889999999998 78887766569999987654433 223333 345788999995 56777788
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..|+|+|-|+|..+.=. ...+++..+. .....-+..--..|..+.|+..|+||++-+. -+|++||+.
T Consensus 234 SKGtIrLcDmR~~aLCd-~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCD-AHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred CCCcEEEeechhhhhhc-chhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 89999999998432100 0001100000 0001122233457889999999999998764 589999994
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=1.4e-08 Score=95.76 Aligned_cols=221 Identities=14% Similarity=0.177 Sum_probs=141.9
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC---------C--------------------
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS---------M-------------------- 153 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~---------~-------------------- 153 (568)
+..++|||+|. .+|.+...|-.|.||.+.+..+...-.+.. +
T Consensus 94 ls~~~WSPdgr---------hiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 94 LSSISWSPDGR---------HILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred ceeeeECCCcc---------eEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 44999999997 788899999999999998854432211111 1
Q ss_pred -------------------cc-CCCCceEEEeecceeccc-ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC
Q 008363 154 -------------------KE-GTDPRFVKLEPVFRCSML-KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA 212 (568)
Q Consensus 154 -------------------~~-~~~~~~v~~~~~~~~~~~-~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~ 212 (568)
+. ..++..+.+|+..---+. ...-.-.+ ..++|+ |.+++|++|+.|+.++|.+--+
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~-k~v~ws--P~~qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGL-KFVEWS--PCNQFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccce-eEEEec--cccceEEeeccchhhhhhceee
Confidence 00 123444555544321111 11222455 788999 6688999999999998754221
Q ss_pred CCCC----------------------------------------------------CCCce--eEEee------CCCCCe
Q 008363 213 SDSS----------------------------------------------------IDSRP--LLCFS------ADTLPI 232 (568)
Q Consensus 213 ~~~~----------------------------------------------------~~~~~--~~~~~------~h~~~V 232 (568)
=+.. ....+ +..++ .-.-.+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 0000 00000 01111 112236
Q ss_pred eEEEEccCCCCCCCCcEEEEEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 233 RAVSWAPAESDSDSANVILTAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 233 ~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.-++|+++. .++||-.+. + +-+||++.. .+..+--...+|....|+|....|+.+.....+++|...
T Consensus 322 g~lafs~Ds------~y~aTrnd~~PnalW~Wdlq~l--~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~ps-- 391 (447)
T KOG4497|consen 322 GKLAFSCDS------TYAATRNDKYPNALWLWDLQNL--KLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS-- 391 (447)
T ss_pred ceeeecCCc------eEEeeecCCCCceEEEEechhh--hhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCC--
Confidence 678999998 788877665 4 999999965 333333446779999999999999988888889999872
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
|-.. -...+....|..++|.-.|..++.++.|....
T Consensus 392 -------g~~~--------V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc~ 427 (447)
T KOG4497|consen 392 -------GPRV--------VGVPKKGFNIQKLQWLQPGEFIVLCGKDAFCV 427 (447)
T ss_pred -------CceE--------EecCCCCceeeeEEecCCCcEEEEEcCCceEE
Confidence 3111 12233447899999999999999999886543
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.08 E-value=1.9e-09 Score=101.41 Aligned_cols=184 Identities=15% Similarity=0.247 Sum_probs=125.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
++ -+.|..+.. .+|.....|+.|.+|++...+-...+ ......+
T Consensus 51 i~-yieW~ads~---------~ilC~~yk~~~vqvwsl~Qpew~ckI--------------------------deg~agl 94 (447)
T KOG4497|consen 51 IV-YIEWKADSC---------HILCVAYKDPKVQVWSLVQPEWYCKI--------------------------DEGQAGL 94 (447)
T ss_pred hh-heeeeccce---------eeeeeeeccceEEEEEeecceeEEEe--------------------------ccCCCcc
Confidence 44 788988875 67888889999999999886665554 4445556
Q ss_pred ceEEEEccCCCCCE-EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C--
Q 008363 182 PLTMEWSTSPPHDY-LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-- 257 (568)
Q Consensus 182 ~~~v~~s~~~~g~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-- 257 (568)
.++.|+ |+|+. |.+...|-.|.+|.+.+. .... +.--...+..++|+|+| ++.+.++.. .
T Consensus 95 -s~~~WS--PdgrhiL~tseF~lriTVWSL~t~------~~~~-~~~pK~~~kg~~f~~dg------~f~ai~sRrDCkd 158 (447)
T KOG4497|consen 95 -SSISWS--PDGRHILLTSEFDLRITVWSLNTQ------KGYL-LPHPKTNVKGYAFHPDG------QFCAILSRRDCKD 158 (447)
T ss_pred -eeeeEC--CCcceEeeeecceeEEEEEEeccc------eeEE-ecccccCceeEEECCCC------ceeeeeecccHHH
Confidence 889999 88865 556667889999999876 2222 22224456889999999 787777653 1
Q ss_pred -EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-
Q 008363 258 -LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS- 335 (568)
Q Consensus 258 -v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~- 335 (568)
+.|..-... ..+..+...+-..+.+.|+|||..|++ ||.--- ...+..|.
T Consensus 159 yv~i~~c~~W-~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Le------------------ykv~aYe~~ 210 (447)
T KOG4497|consen 159 YVQISSCKAW-ILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLE------------------YKVYAYERG 210 (447)
T ss_pred HHHHHhhHHH-HHHHhcCCCcccccCceECCCCcEEEE---------ecchhh------------------heeeeeeec
Confidence 333222222 333444444455689999999987664 553110 01112222
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
-.+..+.|+|.+++|+.|+.|+.++|.+--
T Consensus 211 lG~k~v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 211 LGLKFVEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred cceeEEEeccccceEEeeccchhhhhhcee
Confidence 467789999999999999999999997653
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=7.1e-10 Score=114.18 Aligned_cols=222 Identities=12% Similarity=0.177 Sum_probs=156.6
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.-....+|..+++ ++.|.|+.+ .+||+++.|-.|..||+.......- .|.
T Consensus 106 Ief~lhghsrait-d~n~~~q~p---------dVlatcsvdt~vh~wd~rSp~~p~y----------------s~~---- 155 (1081)
T KOG0309|consen 106 IEFVLHGHSRAIT-DINFNPQHP---------DVLATCSVDTYVHAWDMRSPHRPFY----------------STS---- 155 (1081)
T ss_pred eEEEEecCcccee-ccccCCCCC---------cceeeccccccceeeeccCCCccee----------------eee----
Confidence 3445678998666 999999998 8999999999999999998443211 111
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.-|++. ..|.|+ ...-.+++.+....|.+||++.+ ..++..+++|...|+.++|+..- ...+
T Consensus 156 ----~w~s~a--sqVkwn--yk~p~vlasshg~~i~vwd~r~g-----s~pl~s~K~~vs~vn~~~fnr~~-----~s~~ 217 (1081)
T KOG0309|consen 156 ----SWRSAA--SQVKWN--YKDPNVLASSHGNDIFVWDLRKG-----STPLCSLKGHVSSVNSIDFNRFK-----YSEI 217 (1081)
T ss_pred ----cccccC--ceeeec--ccCcchhhhccCCceEEEeccCC-----CcceEEecccceeeehHHHhhhh-----hhhh
Confidence 122222 678998 33345555666778999999976 47888999999999999998765 2578
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE--eCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS--FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
.+++.|+ |++||.......-.....-..+|..-+|.|-|...++- -.+..+.+++.++.... .-..+..++
T Consensus 218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e------~n~~~~~~p 291 (1081)
T KOG0309|consen 218 MSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLE------WNVFDLNTP 291 (1081)
T ss_pred cccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhh------hccccCCcc
Confidence 8888888 99999886532222222345677888888876654443 23446666666553311 111223477
Q ss_pred eEEEecCCCCEEEEEEecCC----------CEEEEEeCCCeEEEEEcCC
Q 008363 328 LHLVNCSSFAIWSVQVSRLT----------GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~----------~~l~s~s~Dg~v~iwd~~~ 366 (568)
++.|.||...|..+.|-..+ -.|+|-+.|..+++|-+..
T Consensus 292 Vh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 292 VHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 89999999988776665332 3799999999999998853
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=1.1e-07 Score=96.94 Aligned_cols=245 Identities=14% Similarity=0.150 Sum_probs=142.3
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.+.|+|++ +++++++.||.|.++|+.+.+.+.++... .. +..
T Consensus 41 ~~~~s~Dg----------r~~yv~~rdg~vsviD~~~~~~v~~i~~G--------------------------~~--~~~ 82 (369)
T PF02239_consen 41 GLKFSPDG----------RYLYVANRDGTVSVIDLATGKVVATIKVG--------------------------GN--PRG 82 (369)
T ss_dssp EEE-TT-S----------SEEEEEETTSEEEEEETTSSSEEEEEE-S--------------------------SE--EEE
T ss_pred EEEecCCC----------CEEEEEcCCCeEEEEECCcccEEEEEecC--------------------------CC--cce
Confidence 57899999 78999999999999999999888776221 11 377
Q ss_pred EEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 185 MEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
++++ ++|+++++++ .++.|.++|..+. +++..+... ...+.+|..+|.. +.++++.-+.
T Consensus 83 i~~s--~DG~~~~v~n~~~~~v~v~D~~tl------e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-----~~fVv~lkd~ 149 (369)
T PF02239_consen 83 IAVS--PDGKYVYVANYEPGTVSVIDAETL------EPVKTIPTGGMPVDGPESRVAAIVASPGR-----PEFVVNLKDT 149 (369)
T ss_dssp EEE----TTTEEEEEEEETTEEEEEETTT--------EEEEEE--EE-TTTS---EEEEEE-SSS-----SEEEEEETTT
T ss_pred EEEc--CCCCEEEEEecCCCceeEeccccc------cceeecccccccccccCCCceeEEecCCC-----CEEEEEEccC
Confidence 8888 8999888775 6899999998866 677766432 3467888888887 2344444444
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccC-------CCCCCC---------
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYD-------VPATGK--------- 318 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~-------~~~~g~--------- 318 (568)
+ |.+.|......................|+|++++++++. ..+.|-++|......- .|..+.
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~ 229 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGF 229 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTT
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCc
Confidence 5 888898876333222223345578899999999988764 3567777776433110 000000
Q ss_pred -----------C------------ccCccccceEEEecCCCCEEEEEEecCCCEEEEE----eCCCeEEEEEcCCCeeec
Q 008363 319 -----------P------------FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC----SADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 319 -----------~------------~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~----s~Dg~v~iwd~~~~~~~~ 371 (568)
. ......+.+..+.....+ .-+..+|++++|.+. ...++|.++|..+.+...
T Consensus 230 g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~ 308 (369)
T PF02239_consen 230 GPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK 308 (369)
T ss_dssp EEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE
T ss_pred ceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeE
Confidence 0 000112233344444444 567889999999888 455899999999876554
Q ss_pred cCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363 372 DHSRNRPMHFLCGSVTEDESAITVNTPLDN 401 (568)
Q Consensus 372 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~ 401 (568)
..............++.+|..+-+..+..+
T Consensus 309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp -HHHHHT--EEEEEE-TTSSEEEEEEE--T
T ss_pred EEeccCCCcEeccEECCCCCEEEEEEecCC
Confidence 422111111344468889988777655444
No 243
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.04 E-value=1.4e-08 Score=96.38 Aligned_cols=104 Identities=14% Similarity=0.359 Sum_probs=85.9
Q ss_pred EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC
Q 008363 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH 274 (568)
Q Consensus 196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~ 274 (568)
...|...|.|.+-.+... ...++..+.+|.+.+.+++|.+.. .++.+|..|. |.+||+.........+.
T Consensus 168 ~fvGd~~gqvt~lr~~~~----~~~~i~~~~~h~~~~~~l~Wd~~~------~~LfSg~~d~~vi~wdigg~~g~~~el~ 237 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN----GCQLITTFNGHTGEVTCLKWDPGQ------RLLFSGASDHSVIMWDIGGRKGTAYELQ 237 (404)
T ss_pred EEecccccceEEEEEeec----CCceEEEEcCcccceEEEEEcCCC------cEEEeccccCceEEEeccCCcceeeeec
Confidence 334555566666555544 237888999999999999999998 8999999998 99999987755667888
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 275 PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 275 ~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
+|...|..+...+.-+.|++++.||.|.+|+....
T Consensus 238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999999999998999999999999999997543
No 244
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=121.29 Aligned_cols=188 Identities=13% Similarity=0.182 Sum_probs=145.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
-+.++.-+|.. -+.++|+.||.|++|....++.+..+.. .|. ..|
T Consensus 2210 ~v~r~~sHp~~----------~~Yltgs~dgsv~~~~w~~~~~v~~~rt------------------------~g~-s~v 2254 (2439)
T KOG1064|consen 2210 NVRRMTSHPSD----------PYYLTGSQDGSVRMFEWGHGQQVVCFRT------------------------AGN-SRV 2254 (2439)
T ss_pred ceeeecCCCCC----------ceEEecCCCceEEEEeccCCCeEEEeec------------------------cCc-chh
Confidence 44467777777 5889999999999999998877755421 333 666
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG- 257 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~- 257 (568)
+.+.|+ ..|+.+..+..||.+.+|.+. . ++....+.|.....++.|-.. ++++++. ++
T Consensus 2255 -tr~~f~--~qGnk~~i~d~dg~l~l~q~~-p------k~~~s~qchnk~~~Df~Fi~s--------~~~tag~s~d~~n 2316 (2439)
T KOG1064|consen 2255 -TRSRFN--HQGNKFGIVDGDGDLSLWQAS-P------KPYTSWQCHNKALSDFRFIGS--------LLATAGRSSDNRN 2316 (2439)
T ss_pred -hhhhhc--ccCCceeeeccCCceeecccC-C------cceeccccCCccccceeeeeh--------hhhccccCCCCCc
Confidence 888888 889999999999999999987 2 678888899999999988763 5666644 35
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA 337 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~ 337 (568)
+.+||..-+...-..-..|.+.++++++-|..+.|++||.+|.|++||++... .+++++.
T Consensus 2317 ~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq----------------l~h~~~~---- 2376 (2439)
T KOG1064|consen 2317 VCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----------------LRHTFQA---- 2376 (2439)
T ss_pred ccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH----------------HHHHhhh----
Confidence 99999875532222226889999999999999999999999999999996411 1123322
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
++ ...++++++..|.++||++....
T Consensus 2377 -----~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2377 -----LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred -----hh-hhheeeccCcccceEEEEccccc
Confidence 44 46789999999999999996543
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1e-07 Score=100.32 Aligned_cols=195 Identities=13% Similarity=0.132 Sum_probs=120.2
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.. .+...+|+|++ +.|+..+.+ ..|.+|++.+++....
T Consensus 196 ~~~~-~~~~p~wSpDG----------~~la~~s~~~~~~~l~~~~l~~g~~~~l-------------------------- 238 (430)
T PRK00178 196 QSRE-PILSPRWSPDG----------KRIAYVSFEQKRPRIFVQNLDTGRREQI-------------------------- 238 (430)
T ss_pred cCCC-ceeeeeECCCC----------CEEEEEEcCCCCCEEEEEECCCCCEEEc--------------------------
Confidence 4444 44589999999 677766543 3688999988654321
Q ss_pred ccCCcCccceEEEEccCCCCCEEE-EEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLL-AGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
......+ ....|+ |+|+.|+ +.+.+| .|.+||+.++ . ...+..+........|+|++ ..|
T Consensus 239 -~~~~g~~-~~~~~S--pDG~~la~~~~~~g~~~Iy~~d~~~~------~-~~~lt~~~~~~~~~~~spDg------~~i 301 (430)
T PRK00178 239 -TNFEGLN-GAPAWS--PDGSKLAFVLSKDGNPEIYVMDLASR------Q-LSRVTNHPAIDTEPFWGKDG------RTL 301 (430)
T ss_pred -cCCCCCc-CCeEEC--CCCCEEEEEEccCCCceEEEEECCCC------C-eEEcccCCCCcCCeEECCCC------CEE
Confidence 1112223 568899 8898877 444555 5777888765 2 23344455556778999998 555
Q ss_pred EEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCc
Q 008363 251 LTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 251 as~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
+..+. ++ |+++|+.++......+. ........|+|+|++|+..+. ++ .|.+||+.. |+.
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t--------g~~---- 367 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAERVTFV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR--------GSV---- 367 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeecC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCC--------CCE----
Confidence 54443 32 88888876632222222 223356789999999988765 33 477888842 322
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcC
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLT 365 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~ 365 (568)
..+. +........|+|+|++|+..+.+ | .|.++++.
T Consensus 368 -----~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 368 -----RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred -----EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 1222 11122356899999888877654 3 45566653
No 246
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=4.2e-08 Score=98.90 Aligned_cols=132 Identities=13% Similarity=0.192 Sum_probs=95.7
Q ss_pred eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE-cCC-C-EEEEECCCCCcceeeeCCCCCCe
Q 008363 204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA-GHG-G-LKFWDIRDPFRPLWDIHPAPKFI 280 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~-s~d-~-v~lwD~~~~~~~~~~~~~h~~~i 280 (568)
++++.++... .+...+ ...++|+++.|+|++ .-|+.+ |.- . +.|+|++. .++..+. .++=
T Consensus 252 ~Lyll~t~g~------s~~V~L-~k~GPVhdv~W~~s~------~EF~VvyGfMPAkvtifnlr~--~~v~df~--egpR 314 (566)
T KOG2315|consen 252 TLYLLATQGE------SVSVPL-LKEGPVHDVTWSPSG------REFAVVYGFMPAKVTIFNLRG--KPVFDFP--EGPR 314 (566)
T ss_pred eEEEEEecCc------eEEEec-CCCCCceEEEECCCC------CEEEEEEecccceEEEEcCCC--CEeEeCC--CCCc
Confidence 5777776622 233333 347999999999998 455444 443 4 99999995 5776665 5666
Q ss_pred EEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC--
Q 008363 281 YGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA-- 355 (568)
Q Consensus 281 ~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~-- 355 (568)
+++-|+|.|++|+.+|. -|.|-|||+.+. +++..+..... +-+.|+|+|.+|+|++.
T Consensus 315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----------------K~i~~~~a~~t--t~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----------------KLIAKFKAANT--TVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred cceEECCCCCEEEEeecCCCCCceEEEeccch----------------hhccccccCCc--eEEEEcCCCcEEEEEeccc
Confidence 89999999999999876 688999999542 23345443332 45789999999999874
Q ss_pred ----CCeEEEEEcCCCeee
Q 008363 356 ----DGTVHRFQLTAKAVE 370 (568)
Q Consensus 356 ----Dg~v~iwd~~~~~~~ 370 (568)
|+.++||++....+.
T Consensus 377 RlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 377 RLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred cEEecCCeEEEEecCceee
Confidence 789999999765544
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.99 E-value=4e-09 Score=113.11 Aligned_cols=142 Identities=16% Similarity=0.155 Sum_probs=116.3
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
-++++|+.-+.|.+|+......-.. +.||.+.+ +++.|+ .+|.++++.|.|
T Consensus 146 ~~i~~gsv~~~iivW~~~~dn~p~~--------------------------l~GHeG~i-F~i~~s--~dg~~i~s~SdD 196 (967)
T KOG0974|consen 146 LYIASGSVFGEIIVWKPHEDNKPIR--------------------------LKGHEGSI-FSIVTS--LDGRYIASVSDD 196 (967)
T ss_pred EEEEeccccccEEEEeccccCCcce--------------------------ecccCCce-EEEEEc--cCCcEEEEEecC
Confidence 6899999999999999873111111 18999998 999999 899999999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC-Ce
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK-FI 280 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~-~i 280 (568)
.++++|++.+... .....-+|+..|..+.|.|. .++|++.|. .++|+... ..+..+.+|.+ .|
T Consensus 197 RsiRlW~i~s~~~-----~~~~~fgHsaRvw~~~~~~n--------~i~t~gedctcrvW~~~~--~~l~~y~~h~g~~i 261 (967)
T KOG0974|consen 197 RSIRLWPIDSREV-----LGCTGFGHSARVWACCFLPN--------RIITVGEDCTCRVWGVNG--TQLEVYDEHSGKGI 261 (967)
T ss_pred cceeeeecccccc-----cCcccccccceeEEEEeccc--------eeEEeccceEEEEEeccc--ceehhhhhhhhcce
Confidence 9999999998733 11244489999999999986 799999998 99997764 34446777754 58
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 281 YGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 281 ~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
..++..++...+++++.|+.+++||+..
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 9999999999999999999999999743
No 248
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.99 E-value=3.5e-08 Score=107.50 Aligned_cols=203 Identities=10% Similarity=0.079 Sum_probs=132.0
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~ 248 (568)
...++..|...+ ..++-++ +.+.++++||.||+|++|+.+.-... ...+...++..-.+.+.++.+.+.+ +
T Consensus 1040 lVAhL~Ehs~~v-~k~a~s~-~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~------~ 1111 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAV-IKLAVSS-EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG------D 1111 (1431)
T ss_pred Eeehhhhccccc-cceeecC-CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC------C
Confidence 344557888888 6777652 23489999999999999998744222 2234444555457889999999999 8
Q ss_pred EEEEEcCCC-EEEEECCCCC------cceeeeCCC-CCCe-EEEEEcC-CCC-EEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 249 VILTAGHGG-LKFWDIRDPF------RPLWDIHPA-PKFI-YGLDWLP-DPG-CVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~------~~~~~~~~h-~~~i-~~l~~sp-~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
.||.++.|| |++.++.... .+......+ .+.+ ..-+|.. .+. .|+.+..-+.|..||++....-
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~----- 1186 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA----- 1186 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH-----
Confidence 999999999 9999987621 111222222 2223 3333433 233 6777888899999999763310
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec---cCCCCCcceeeeecccCCCCceE
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK---DHSRNRPMHFLCGSVTEDESAIT 394 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~~~~~~~~~s~~~~~~~i~ 394 (568)
.. .......+.|++++.+|.+.++++|+..|.+.+||++-+.... .+...+..++.+.-+.+.+..++
T Consensus 1187 --------w~-lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~v 1257 (1431)
T KOG1240|consen 1187 --------WR-LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSV 1257 (1431)
T ss_pred --------Hh-hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEE
Confidence 00 1223345789999999999999999999999999997554332 12233344444444444334433
No 249
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.99 E-value=1.5e-08 Score=96.23 Aligned_cols=214 Identities=14% Similarity=0.144 Sum_probs=152.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
..||.. .+++...-|.. .-+++.+.|.+++||--.+ ++.-..++
T Consensus 20 ~eG~~d-~vn~~~l~~~e----------~gv~~~s~drtvrv~lkrds~q~wpsI~------------------------ 64 (404)
T KOG1409|consen 20 IEGSQD-DVNAAILIPKE----------EGVISVSEDRTVRVWLKRDSGQYWPSIY------------------------ 64 (404)
T ss_pred hcCchh-hhhhheeccCC----------CCeEEccccceeeeEEeccccccCchhh------------------------
Confidence 346766 55476677766 3588999999999995433 44332220
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
..-... |+++.+. ++...|++|-..|++.-+.+...- ......+.+..|...|..+-|+-.. .+++++
T Consensus 65 -~~mP~~-~~~~~y~--~e~~~L~vg~~ngtvtefs~sedf--nkm~~~r~~~~h~~~v~~~if~~~~------e~V~s~ 132 (404)
T KOG1409|consen 65 -HYMPSP-CSAMEYV--SESRRLYVGQDNGTVTEFALSEDF--NKMTFLKDYLAHQARVSAIVFSLTH------EWVLST 132 (404)
T ss_pred -hhCCCC-ceEeeee--ccceEEEEEEecceEEEEEhhhhh--hhcchhhhhhhhhcceeeEEecCCc------eeEEEe
Confidence 111223 3888888 788899999999999988765221 1224556667888888888887765 666666
Q ss_pred cCCCEEEEEC-CC----------------------------------------CCcceeeeCCCCCCeEEEEEcCCCCEE
Q 008363 254 GHGGLKFWDI-RD----------------------------------------PFRPLWDIHPAPKFIYGLDWLPDPGCV 292 (568)
Q Consensus 254 s~d~v~lwD~-~~----------------------------------------~~~~~~~~~~h~~~i~~l~~sp~~~~l 292 (568)
+.|+-..|-. +. ...++.++.+|.+.+++++|.|..+.|
T Consensus 133 ~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~L 212 (404)
T KOG1409|consen 133 GKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLL 212 (404)
T ss_pred ccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEE
Confidence 6655222211 00 013445667999999999999999999
Q ss_pred EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
++|..|..|.+||+-- .. .....+.+|...|..++..+.-+.|++++.||.|.+|+++..+.+
T Consensus 213 fSg~~d~~vi~wdigg---------~~------g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 213 FSGASDHSVIMWDIGG---------RK------GTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred EeccccCceEEEeccC---------Cc------ceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeec
Confidence 9999999999999932 22 112477899999999998888899999999999999999765444
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=1.3e-07 Score=99.63 Aligned_cols=191 Identities=17% Similarity=0.143 Sum_probs=114.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeC-CC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT 178 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~ 178 (568)
.+....|+|+| +.|+..+. ++ .|.+||+.+++.... ....
T Consensus 219 ~~~~p~wSPDG----------~~La~~s~~~g~~~L~~~dl~tg~~~~l---------------------------t~~~ 261 (448)
T PRK04792 219 PLMSPAWSPDG----------RKLAYVSFENRKAEIFVQDIYTQVREKV---------------------------TSFP 261 (448)
T ss_pred cccCceECCCC----------CEEEEEEecCCCcEEEEEECCCCCeEEe---------------------------cCCC
Confidence 34478999999 67776543 33 588889887654221 1111
Q ss_pred CccceEEEEccCCCCCEEEE-EeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 179 QSIPLTMEWSTSPPHDYLLA-GCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~s-gs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
... ....|+ |+|+.|+. .+.+|. |.+||+.++ . ...+..+.......+|+|++ ..|+..+.
T Consensus 262 g~~-~~~~wS--PDG~~La~~~~~~g~~~Iy~~dl~tg------~-~~~lt~~~~~~~~p~wSpDG------~~I~f~s~ 325 (448)
T PRK04792 262 GIN-GAPRFS--PDGKKLALVLSKDGQPEIYVVDIATK------A-LTRITRHRAIDTEPSWHPDG------KSLIFTSE 325 (448)
T ss_pred CCc-CCeeEC--CCCCEEEEEEeCCCCeEEEEEECCCC------C-eEECccCCCCccceEECCCC------CEEEEEEC
Confidence 222 567899 88987764 566775 666677654 2 23344455566788999998 56655443
Q ss_pred -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCccccce
Q 008363 256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
++ |.++|+.++.....++. .......+|+|||++|+..+. ++. |.++|+. +|+.
T Consensus 326 ~~g~~~Iy~~dl~~g~~~~Lt~~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~--------~g~~--------- 386 (448)
T PRK04792 326 RGGKPQIYRVNLASGKVSRLTFE--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLE--------TGAM--------- 386 (448)
T ss_pred CCCCceEEEEECCCCCEEEEecC--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECC--------CCCe---------
Confidence 32 77778876532222222 222346799999999988755 444 4455653 2322
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCC-Ce--EEEEEcC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD-GT--VHRFQLT 365 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~--v~iwd~~ 365 (568)
..+... .......|+|+|++|+..+.+ |. ++++++.
T Consensus 387 ~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~ 425 (448)
T PRK04792 387 QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID 425 (448)
T ss_pred EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 122211 112245799999887776644 33 6666663
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.98 E-value=2.7e-07 Score=97.16 Aligned_cols=186 Identities=14% Similarity=0.123 Sum_probs=115.7
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+...+ ....|+ |+|+.|+..+.+ ..|.+||+.++.. +.+ ....+.+....|+|+| +.|+
T Consensus 195 ~~~~~~~-~~p~wS--pDG~~la~~s~~~~~~~l~~~~l~~g~~----~~l---~~~~g~~~~~~~SpDG------~~la 258 (430)
T PRK00178 195 LQSREPI-LSPRWS--PDGKRIAYVSFEQKRPRIFVQNLDTGRR----EQI---TNFEGLNGAPAWSPDG------SKLA 258 (430)
T ss_pred ecCCCce-eeeeEC--CCCCEEEEEEcCCCCCEEEEEECCCCCE----EEc---cCCCCCcCCeEECCCC------CEEE
Confidence 3445566 888999 899988876644 3688999986621 222 2233445678999999 5655
Q ss_pred -EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCcc
Q 008363 252 -TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 252 -s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
+.+.+ . |++||+.++. ...+..+........|+|||+.|+..+. +| .|+++|+. +|+.
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~--------~g~~----- 323 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN--------GGRA----- 323 (430)
T ss_pred EEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC--------CCCE-----
Confidence 44443 3 8888998752 3334455555677899999998887764 33 46666763 2332
Q ss_pred ccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
..+...........|+|+|++|+..+.+ + .|.+||+.++....-.... .. ...++++++..+...+.
T Consensus 324 ----~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~~--~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 324 ----ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS-LD--ESPSVAPNGTMLIYATR 393 (430)
T ss_pred ----EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-CC--CCceECCCCCEEEEEEe
Confidence 1221112223457899999988877654 3 5888999877544321111 11 12257788877766443
No 252
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=2e-08 Score=95.27 Aligned_cols=228 Identities=14% Similarity=0.189 Sum_probs=145.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee-EEeccCC------------ccCCCCceEEEeecc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK-AIYLSSM------------KEGTDPRFVKLEPVF 168 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~-~l~~~~~------------~~~~~~~~v~~~~~~ 168 (568)
-+..++|.+++.. ..++..+.|.+|++|.+....... ....... +.+..+..+...|..
T Consensus 86 KinkIrw~~~~n~--------a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prR 157 (433)
T KOG1354|consen 86 KINKIRWLDDGNL--------AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRR 157 (433)
T ss_pred hhhhceecCCCCc--------cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeee
Confidence 3448999988732 566667789999999987632211 0000000 111222222222222
Q ss_pred eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEEEEccCCCC
Q 008363 169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAVSWAPAESD 243 (568)
Q Consensus 169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~ 243 (568)
.| ...|+--| .++.++ .|...++++. |=.|.+|++.-... .-.+..++.| +.-|++..|+|...
T Consensus 158 v~---aNaHtyhi-NSIS~N--sD~Et~lSAD-dLRINLWnlei~d~---sFnIVDIKP~nmEeLteVITsaEFhp~~c- 226 (433)
T KOG1354|consen 158 VY---ANAHTYHI-NSISVN--SDKETFLSAD-DLRINLWNLEIIDQ---SFNIVDIKPANMEELTEVITSAEFHPHHC- 226 (433)
T ss_pred ec---cccceeEe-eeeeec--CccceEeecc-ceeeeeccccccCC---ceeEEEccccCHHHHHHHHhhhccCHhHc-
Confidence 21 24677777 888887 8887888776 77899999873311 0122223333 34588999999875
Q ss_pred CCCCcEEEEEcCCC-EEEEECCCCCcce-----ee----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 244 SDSANVILTAGHGG-LKFWDIRDPFRPL-----WD----------IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 244 ~~~~~~las~s~d~-v~lwD~~~~~~~~-----~~----------~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
++|+-.+..| |+|-|+|....|. .. +..--..|..+.|+++|++|++-.. -+|++||+.
T Consensus 227 ----n~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 227 ----NVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred ----cEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 7777777766 9999999543221 11 1112346788999999999988643 589999995
Q ss_pred ccccCCCCCCCCccCccccceEEEecCCC------------CE---EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNCSSF------------AI---WSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h~~------------~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
.- . +++.++..|.. .| ..++|+.++.+++||+....+++|++..+.
T Consensus 302 me-------~--------~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 302 ME-------A--------KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred cc-------C--------CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 42 2 33456665542 22 357899999999999999999999976554
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.93 E-value=4.4e-07 Score=92.55 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=127.0
Q ss_pred cEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363 123 GYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
+++ ++-..+|.|.|.|..+.+.+..+.. .... ...+.++ +||+++++++.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~--------------------------~~~~-h~~~~~s--~Dgr~~yv~~r 56 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPT--------------------------GGAP-HAGLKFS--PDGRYLYVANR 56 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE---------------------------STTE-EEEEE-T--T-SSEEEEEET
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcC--------------------------CCCc-eeEEEec--CCCCEEEEEcC
Confidence 344 4566789999999999888877621 1111 1456777 89999999999
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcceeeeCC----
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPLWDIHP---- 275 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~~~~~~---- 275 (568)
||.|.++|+.+. +.+..+.... ...+++++++| ++++++.. .+ +.++|.++. .++..+..
T Consensus 57 dg~vsviD~~~~------~~v~~i~~G~-~~~~i~~s~DG------~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~ 122 (369)
T PF02239_consen 57 DGTVSVIDLATG------KVVATIKVGG-NPRGIAVSPDG------KYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMP 122 (369)
T ss_dssp TSEEEEEETTSS------SEEEEEE-SS-EEEEEEE--TT------TEEEEEEEETTEEEEEETTT---EEEEEE--EE-
T ss_pred CCeEEEEECCcc------cEEEEEecCC-CcceEEEcCCC------CEEEEEecCCCceeEeccccc-cceeeccccccc
Confidence 999999999977 7777776544 46889999999 78777765 45 999999987 66655532
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363 276 ---APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351 (568)
Q Consensus 276 ---h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~ 351 (568)
....+..|..+|....++..-. -+.|.+.|.... +.+ ...............|+|++++++
T Consensus 123 ~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~--------~~~-------~~~~i~~g~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 123 VDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP--------KNL-------KVTTIKVGRFPHDGGFDPDGRYFL 187 (369)
T ss_dssp TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS--------SCE-------EEEEEE--TTEEEEEE-TTSSEEE
T ss_pred ccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc--------ccc-------ceeeecccccccccccCcccceee
Confidence 2345778888898886666555 588888887442 111 112222345567899999998876
Q ss_pred EE-eCCCeEEEEEcCCCeeecc
Q 008363 352 YC-SADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 352 s~-s~Dg~v~iwd~~~~~~~~~ 372 (568)
.+ ..+..|-++|..++++...
T Consensus 188 va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 188 VAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEGGGTEEEEEETTTTEEEEE
T ss_pred ecccccceeEEEeeccceEEEE
Confidence 64 5677899999998876653
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.93 E-value=4e-07 Score=95.93 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=109.8
Q ss_pred CcCccceEEEEccCCCCCEEEEEeC-CC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-E
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCH-DG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-T 252 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s 252 (568)
+...+ .+..|+ |+|+.|+..+. ++ .|.+||+.++.. ..+..+ .+.....+|+|++ +.|+ +
T Consensus 216 ~~~~~-~~p~wS--PDG~~La~~s~~~g~~~L~~~dl~tg~~----~~lt~~---~g~~~~~~wSPDG------~~La~~ 279 (448)
T PRK04792 216 SPEPL-MSPAWS--PDGRKLAYVSFENRKAEIFVQDIYTQVR----EKVTSF---PGINGAPRFSPDG------KKLALV 279 (448)
T ss_pred CCCcc-cCceEC--CCCCEEEEEEecCCCcEEEEEECCCCCe----EEecCC---CCCcCCeeECCCC------CEEEEE
Confidence 34455 788999 89998887654 33 588888876521 223223 2334578999999 5555 4
Q ss_pred EcCCC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEccccccCCCCCCCCccCcccc
Q 008363 253 AGHGG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 253 ~s~d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
.+.++ |.+||+.++ ....+..+.......+|+|||+.|+..+. ++. |+++|+. +|+.
T Consensus 280 ~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~--------~g~~------- 342 (448)
T PRK04792 280 LSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLA--------SGKV------- 342 (448)
T ss_pred EeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECC--------CCCE-------
Confidence 44443 888898765 23344445555678999999999887764 444 5555662 2332
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
..+..........+|+|+|++|+..+.+ + .|.++|+.++....-... .... -.++++++..|....
T Consensus 343 --~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~-~~d~--~ps~spdG~~I~~~~ 411 (448)
T PRK04792 343 --SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTST-RLDE--SPSVAPNGTMVIYST 411 (448)
T ss_pred --EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCC-CCCC--CceECCCCCEEEEEE
Confidence 1222122223457899999888776653 4 456677777654332111 1111 125677887776544
No 255
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=2e-08 Score=101.14 Aligned_cols=172 Identities=19% Similarity=0.312 Sum_probs=126.1
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
..+.+.+++|..++.. ++|++|+.+|.|..||........++.....+.. .....
T Consensus 172 ~~~~~~lN~v~in~~h----------gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s---------------~pg~~ 226 (703)
T KOG2321|consen 172 ETDSGELNVVSINEEH----------GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNS---------------HPGGD 226 (703)
T ss_pred ccccccceeeeecCcc----------ceEEecccCceEEEecchhhhhheeeecccccCC---------------Ccccc
Confidence 3444577799999988 7999999999999999998666655533221000 00012
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
....| +++.|+ .+|-.+++|..+|.|.|||+++. +++..- .+..-+|..+.|.+.+ ..+.++|...
T Consensus 227 ~~~sv-Tal~F~--d~gL~~aVGts~G~v~iyDLRa~------~pl~~kdh~~e~pi~~l~~~~~~----~q~~v~S~Dk 293 (703)
T KOG2321|consen 227 AAPSV-TALKFR--DDGLHVAVGTSTGSVLIYDLRAS------KPLLVKDHGYELPIKKLDWQDTD----QQNKVVSMDK 293 (703)
T ss_pred ccCcc-eEEEec--CCceeEEeeccCCcEEEEEcccC------CceeecccCCccceeeecccccC----CCceEEecch
Confidence 23446 999998 77999999999999999999987 554432 2345679999998875 2356766655
Q ss_pred CCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 256 GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 256 d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
..++|||-.++ .+...+.. ...++.+|+-|++..++++-.+..+..|=+..
T Consensus 294 ~~~kiWd~~~G-k~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 294 RILKIWDECTG-KPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred HHhhhcccccC-Cceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 45999999988 77766644 44499999999999999998888887776543
No 256
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.91 E-value=7.9e-06 Score=83.19 Aligned_cols=223 Identities=13% Similarity=0.110 Sum_probs=134.4
Q ss_pred eEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..++++|++ ++|+++. .+|.|.++++.. +........ ++.... .. ........-
T Consensus 90 ~~i~~~~~g----------~~l~vany~~g~v~v~~l~~~g~l~~~~~~-----------~~~~g~--g~-~~~rq~~~h 145 (345)
T PF10282_consen 90 CHIAVDPDG----------RFLYVANYGGGSVSVFPLDDDGSLGEVVQT-----------VRHEGS--GP-NPDRQEGPH 145 (345)
T ss_dssp EEEEECTTS----------SEEEEEETTTTEEEEEEECTTSEEEEEEEE-----------EESEEE--ES-STTTTSSTC
T ss_pred EEEEEecCC----------CEEEEEEccCCeEEEEEccCCcccceeeee-----------cccCCC--CC-ccccccccc
Confidence 389999999 6777776 589999999987 333322100 000000 00 000111111
Q ss_pred ceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-
Q 008363 182 PLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGH-GG- 257 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~- 257 (568)
+.++.|+ |+|+++++... ...|.+|++...... ......+. ......+.++|+|++ +++....+ ++
T Consensus 146 ~H~v~~~--pdg~~v~v~dlG~D~v~~~~~~~~~~~--l~~~~~~~~~~G~GPRh~~f~pdg------~~~Yv~~e~s~~ 215 (345)
T PF10282_consen 146 PHQVVFS--PDGRFVYVPDLGADRVYVYDIDDDTGK--LTPVDSIKVPPGSGPRHLAFSPDG------KYAYVVNELSNT 215 (345)
T ss_dssp EEEEEE---TTSSEEEEEETTTTEEEEEEE-TTS-T--EEEEEEEECSTTSSEEEEEE-TTS------SEEEEEETTTTE
T ss_pred ceeEEEC--CCCCEEEEEecCCCEEEEEEEeCCCce--EEEeeccccccCCCCcEEEEcCCc------CEEEEecCCCCc
Confidence 3788888 88988877643 347999999865310 12222232 334568899999998 56655544 55
Q ss_pred EEEEECCCCCc---ceeeeC----CC--CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 258 LKFWDIRDPFR---PLWDIH----PA--PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 258 v~lwD~~~~~~---~~~~~~----~h--~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
|.++++..... .+..+. +. ......|+++|||++|+++.. .+.|.+|++.. .+|.+ ..
T Consensus 216 v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~------~~g~l------~~ 283 (345)
T PF10282_consen 216 VSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP------ATGTL------TL 283 (345)
T ss_dssp EEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT------TTTTE------EE
T ss_pred EEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec------CCCce------EE
Confidence 99999883221 112221 11 125789999999999999865 78899999943 23443 33
Q ss_pred eEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEc--CCCeeecc
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQL--TAKAVEKD 372 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~--~~~~~~~~ 372 (568)
+..+.......+.++++|+|++|+++. .++.|.+|++ .++.+...
T Consensus 284 ~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 284 VQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 444444445579999999999888777 5678999977 35555443
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.91 E-value=1.8e-08 Score=92.14 Aligned_cols=149 Identities=16% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC------CCEEEEECCCC
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH------GGLKFWDIRDP 266 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~------d~v~lwD~~~~ 266 (568)
+..+++++.||.+.+++.+.- . +..+.+..-...-.+......+ +++.+++- |..+.|+++..
T Consensus 101 ~t~V~~~~~dg~~~v~s~~~~-~----~~~~~i~~~~~~~as~~~~~~~------~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 101 DNRVCIGYADGSLAVFSTDKD-L----ALMSRIPSIHSGSASRKICRHG------NSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred CCceEecCCCceEEEEechHH-H----hhhhhcccccccccccceeecc------cEEecCCcceEeeccceeeeccccc
Confidence 568999999999999997731 1 1111111111112223333344 45555433 34777877643
Q ss_pred CcceeeeCCCCCCeEEEEEcCCCCEE-EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec
Q 008363 267 FRPLWDIHPAPKFIYGLDWLPDPGCV-ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR 345 (568)
Q Consensus 267 ~~~~~~~~~h~~~i~~l~~sp~~~~l-~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp 345 (568)
..+..-......|++++-+|..+.+ ++|+.||.+-+||.|+.. -+...+..|..+|+.+.|+|
T Consensus 170 -~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---------------~p~S~l~ahk~~i~eV~FHp 233 (319)
T KOG4714|consen 170 -KTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---------------MPVSLLKAHKAEIWEVHFHP 233 (319)
T ss_pred -ccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---------------chHHHHHHhhhhhhheeccC
Confidence 2221111123348999999966554 556779999999998854 33457889999999999999
Q ss_pred C-CCEEEEEeCCCeEEEEEcCCCe
Q 008363 346 L-TGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 346 ~-~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
. +..|++++.||.+..||..+..
T Consensus 234 k~p~~Lft~sedGslw~wdas~~~ 257 (319)
T KOG4714|consen 234 KNPEHLFTCSEDGSLWHWDASTTF 257 (319)
T ss_pred CCchheeEecCCCcEEEEcCCCce
Confidence 8 5899999999999999997643
No 258
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.90 E-value=7.9e-09 Score=102.13 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=149.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
..|.+ .++.++.-|..+ .-|.+++.|+.|.-+|+........+.-. .
T Consensus 229 ~~h~g-~vhklav~p~sp---------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-----------------------~ 275 (559)
T KOG1334|consen 229 APHEG-PVHKLAVEPDSP---------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR-----------------------E 275 (559)
T ss_pred ccccC-ccceeeecCCCC---------CcccccccccceeeeeeccCCccceeeee-----------------------c
Confidence 35666 666999999987 78999999999999998875444332100 1
Q ss_pred CCcC---ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCC
Q 008363 176 GGTQ---SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 176 ~h~~---~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~ 246 (568)
.+.. .. ++++..|... ..+++|+.|..+++||.+.-........+..|.. ....|++++|+.+++
T Consensus 276 ~~~~~~v~L-~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---- 349 (559)
T KOG1334|consen 276 ADEKERVGL-YTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---- 349 (559)
T ss_pred cCCccceee-eeEecCCCCc-cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc----
Confidence 1111 23 6677665533 4899999999999999874432211222333322 234599999997763
Q ss_pred CcEEEEEcCCCEEEEECCCCCc----------c-e-eeeCCCCC--CeEEEEE-cCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 247 ANVILTAGHGGLKFWDIRDPFR----------P-L-WDIHPAPK--FIYGLDW-LPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 247 ~~~las~s~d~v~lwD~~~~~~----------~-~-~~~~~h~~--~i~~l~~-sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
.+||+-.+..|+|+.-.-+.. . + ..+.+|.. .|..+-| -|...|+++|++=|.|.||+-
T Consensus 350 -ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K----- 423 (559)
T KOG1334|consen 350 -ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK----- 423 (559)
T ss_pred -ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec-----
Confidence 777777776799994332211 1 1 22556753 4666665 578899999999999999998
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
.+++.+ +.+.+....|+||.=+|.-.+||+++.|..|+||-..
T Consensus 424 ---~t~eii--------~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 424 ---KTGEII--------RFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ---chhHHH--------HHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence 346554 5667766799999999999999999999999999873
No 259
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=1.4e-08 Score=96.36 Aligned_cols=160 Identities=13% Similarity=0.077 Sum_probs=120.2
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
..+|+..-.|-+ ++.+.+-.|-|-|+.++ ..+.|. ..+.|.++.|+..+ +++..|...| |..+|
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg-------~~qsf~-sksDVfAlQf~~s~------nLv~~GcRngeI~~iD 280 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETG-------HQQSFQ-SKSDVFALQFAGSD------NLVFNGCRNGEIFVID 280 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecc-------cccccc-cchhHHHHHhcccC------CeeEecccCCcEEEEE
Confidence 347775444545 55555778889999876 223443 56779999999987 8999999999 99999
Q ss_pred CCCCC----cceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363 263 IRDPF----RPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA 337 (568)
Q Consensus 263 ~~~~~----~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~ 337 (568)
+|... .+...+ -|...|+++.... ++++|++++.+|.|.+||+|..+ .+ ..++++.||...
T Consensus 281 LR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K-----~~--------~~V~qYeGHvN~ 346 (425)
T KOG2695|consen 281 LRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK-----CK--------KSVMQYEGHVNL 346 (425)
T ss_pred eeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh-----cc--------cceeeeeccccc
Confidence 99762 444444 5788899998887 78999999999999999998643 11 236799999765
Q ss_pred EEEE--EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 338 IWSV--QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 338 V~~l--~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
-.-+ ...+....|++++.|...+||.+..+.+..+
T Consensus 347 ~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 347 SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred ccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 4433 3445568999999999999999987765543
No 260
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.81 E-value=1.3e-05 Score=81.66 Aligned_cols=236 Identities=14% Similarity=0.180 Sum_probs=141.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeC----CCcEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLG----NGSLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~----dg~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
-++++|++ ++|.+... +|.|..|.+... ..+..+... + ..+.
T Consensus 41 ~l~~~~~~----------~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~--------------~-------~~g~-- 87 (345)
T PF10282_consen 41 WLAVSPDG----------RRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV--------------P-------SGGS-- 87 (345)
T ss_dssp CEEE-TTS----------SEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE--------------E-------ESSS--
T ss_pred eEEEEeCC----------CEEEEEEccccCCCCEEEEEECCCcceeEEeeee--------------c-------cCCC--
Confidence 68899998 78888776 578999988763 222221000 0 0111
Q ss_pred ccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee----------CCCCCeeEEEEccCCCCCCCCc
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS----------ADTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~----------~h~~~V~~v~~~p~~~~~~~~~ 248 (568)
. |..++.+ +++++|+++.. +|+|.++++...... ......+. .......++.|+|++ +
T Consensus 88 ~-p~~i~~~--~~g~~l~vany~~g~v~v~~l~~~g~l--~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg------~ 156 (345)
T PF10282_consen 88 S-PCHIAVD--PDGRFLYVANYGGGSVSVFPLDDDGSL--GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG------R 156 (345)
T ss_dssp C-EEEEEEC--TTSSEEEEEETTTTEEEEEEECTTSEE--EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS------S
T ss_pred C-cEEEEEe--cCCCEEEEEEccCCeEEEEEccCCccc--ceeeeecccCCCCCcccccccccceeEEECCCC------C
Confidence 1 3567766 88888888864 899999999864110 01111121 123457899999999 7
Q ss_pred EEEEEcCC--CEEEEECCCCCcce---eeeC-CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCcc
Q 008363 249 VILTAGHG--GLKFWDIRDPFRPL---WDIH-PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 249 ~las~s~d--~v~lwD~~~~~~~~---~~~~-~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
++++...+ .|.+|++......+ ..+. ........+.|+|+++++++..+ +++|.+|++... .|.+
T Consensus 157 ~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~------~g~~-- 228 (345)
T PF10282_consen 157 FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPS------DGSL-- 228 (345)
T ss_dssp EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT------TTEE--
T ss_pred EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeeccc------CCce--
Confidence 77777554 49999998663222 2222 33455789999999999988766 889999998621 2322
Q ss_pred CccccceEEEec----C--CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCeeecc---CCCCCcceeeeecccCC
Q 008363 322 GTKQQGLHLVNC----S--SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT--AKAVEKD---HSRNRPMHFLCGSVTED 389 (568)
Q Consensus 322 ~~~~~~l~~~~~----h--~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~--~~~~~~~---~~~~~~~~~~~~s~~~~ 389 (568)
..+..+.. . ......|+++|+|++|.++. .++.|.+|++. ++.+... ...-..|+-+ .++++
T Consensus 229 ----~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~--~~s~~ 302 (345)
T PF10282_consen 229 ----TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHF--AFSPD 302 (345)
T ss_dssp ----EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEE--EE-TT
T ss_pred ----eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEE--EEeCC
Confidence 12222221 1 12578899999998877655 67789999993 3333221 1122334433 56788
Q ss_pred CCceEEccc
Q 008363 390 ESAITVNTP 398 (568)
Q Consensus 390 ~~~i~~~~~ 398 (568)
+..+.+...
T Consensus 303 g~~l~Va~~ 311 (345)
T PF10282_consen 303 GRYLYVANQ 311 (345)
T ss_dssp SSEEEEEET
T ss_pred CCEEEEEec
Confidence 888777543
No 261
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=2.1e-06 Score=89.77 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=109.0
Q ss_pred eEEEEccCCCCCEE---EEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 183 LTMEWSTSPPHDYL---LAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l---~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
.+-.|+ |||+.+ ++...+| .|.+.++..+. ...+..+ .+.....+|+|+| +.||..+.
T Consensus 188 ~sP~wS--PDG~~~~~~y~S~~~g~~~I~~~~l~~g~----~~~lt~~---~g~~~~p~wSPDG------~~Laf~s~~~ 252 (428)
T PRK01029 188 ITPTWM--HIGSGFPYLYVSYKLGVPKIFLGSLENPA----GKKILAL---QGNQLMPTFSPRK------KLLAFISDRY 252 (428)
T ss_pred ccceEc--cCCCceEEEEEEccCCCceEEEEECCCCC----ceEeecC---CCCccceEECCCC------CEEEEEECCC
Confidence 667899 888642 2444454 46666776552 2333333 4445568999999 67665543
Q ss_pred ---CC-EEEEECCCC--CcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 ---GG-LKFWDIRDP--FRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 ---d~-v~lwD~~~~--~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+. +.+|++..+ ..+......+.......+|+|||+.|+..+. +|...||.+.... .+.. .
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~-----~g~~--------~ 319 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDP-----EGQS--------P 319 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcc-----cccc--------e
Confidence 22 444777642 1222233222334467899999998887764 6765666542100 1111 1
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
..+..+...+....|+|+|+.|+..+.+ ..|++||+.++....-..... ......+++++..|...
T Consensus 320 ~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 320 RLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYS 388 (428)
T ss_pred EEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEE
Confidence 2344444566788999999988877653 469999998886654322111 12234577888777653
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=3.9e-07 Score=92.00 Aligned_cols=132 Identities=21% Similarity=0.427 Sum_probs=98.7
Q ss_pred CcCccceEEEEccCCCCCEEE--EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLL--AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~--sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
-.++| .++.|+ ++|+.++ -|..--++.|+|++. .++..| -.++=+++-|+|.| ++|+-+|
T Consensus 269 k~GPV-hdv~W~--~s~~EF~VvyGfMPAkvtifnlr~-------~~v~df--~egpRN~~~fnp~g------~ii~lAG 330 (566)
T KOG2315|consen 269 KEGPV-HDVTWS--PSGREFAVVYGFMPAKVTIFNLRG-------KPVFDF--PEGPRNTAFFNPHG------NIILLAG 330 (566)
T ss_pred CCCCc-eEEEEC--CCCCEEEEEEecccceEEEEcCCC-------CEeEeC--CCCCccceEECCCC------CEEEEee
Confidence 36788 999999 6776554 456677899999983 466655 46778899999999 8988887
Q ss_pred CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCcc
Q 008363 255 HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 255 ~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
-+ | |-|||+.+. +.+..+.... -+-+.|+|||+++++++. |+.++||+. +|..+
T Consensus 331 FGNL~G~mEvwDv~n~-K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy---------tG~~l---- 394 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNR-KLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY---------TGSLL---- 394 (566)
T ss_pred cCCCCCceEEEeccch-hhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe---------cCcee----
Confidence 76 6 999999984 7776665433 467899999999999854 889999999 67654
Q ss_pred ccceEEEecCCCCEEEEEEecCC
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
+... -....+.+.|-|..
T Consensus 395 ----~~~~-f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 395 ----HEKM-FKSELLQVEWRPFN 412 (566)
T ss_pred ----ehhh-hhHhHhheeeeecC
Confidence 1111 11157788888753
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.72 E-value=1.5e-06 Score=88.53 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=124.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..|+-|...|.|.+|++..++....+.. ..|.+.| .++.|+ .+-..|.+++.|
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st------------------------~~h~~~v-~~~~~~--~~~~ciyS~~ad 123 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLST------------------------DKHYGNV-NEILDA--QRLGCIYSVGAD 123 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEec------------------------CCCCCcc-eeeecc--cccCceEecCCc
Confidence 5788899999999999999887777632 5788898 999988 777799999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEE
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYG 282 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~ 282 (568)
+.+..|+.... ..++.+.+....+.+++.+|++ ..+++++. .|++||+.+. ..+..|.+|.++|.+
T Consensus 124 ~~v~~~~~~~~------~~~~~~~~~~~~~~sl~is~D~------~~l~~as~-~ik~~~~~~k-evv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 124 LKVVYILEKEK------VIIRIWKEQKPLVSSLCISPDG------KILLTASR-QIKVLDIETK-EVVITFTGHGSPVRT 189 (541)
T ss_pred eeEEEEecccc------eeeeeeccCCCccceEEEcCCC------CEEEeccc-eEEEEEccCc-eEEEEecCCCcceEE
Confidence 99999999976 7888888888999999999998 78887753 3999999988 888999999999999
Q ss_pred EEEcCC-----CCEEEEE-eCCCcEEEEEccc
Q 008363 283 LDWLPD-----PGCVILS-FDDGAMRIVSLLK 308 (568)
Q Consensus 283 l~~sp~-----~~~l~s~-~~dg~I~lwd~~~ 308 (568)
+.|--+ |.+++++ ..+..|.+|-++.
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999877 7777776 4477788888754
No 264
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.70 E-value=2.5e-07 Score=89.89 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=104.2
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcc
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRP 269 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~ 269 (568)
+.+++||++..+....++++..... ..+++..+..- ..-+++.|..... ...+.-.+++.. +.+|.... .+
T Consensus 72 ~~~~llAv~~~~K~~~~f~~~~~~~--~~kl~~~~~v~-~~~~ai~~~~~~~---sv~v~dkagD~~~~di~s~~~--~~ 143 (390)
T KOG3914|consen 72 DSGRLVAVATSSKQRAVFDYRENPK--GAKLLDVSCVP-KRPTAISFIREDT---SVLVADKAGDVYSFDILSADS--GR 143 (390)
T ss_pred CCceEEEEEeCCCceEEEEEecCCC--cceeeeEeecc-cCcceeeeeeccc---eEEEEeecCCceeeeeecccc--cC
Confidence 6788899998888888888775522 12333333222 2234444444431 002222333444 77776654 23
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEecCCC
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp~~~ 348 (568)
...+-+|-.-++.|+|+||+++|+++..|..|++-...... -+. -.-||+.-|..++.-++ .
T Consensus 144 ~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------------~IesfclGH~eFVS~isl~~~-~ 206 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------------VIESFCLGHKEFVSTISLTDN-Y 206 (390)
T ss_pred cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------------chhhhccccHhheeeeeeccC-c
Confidence 33455899999999999999999999999999997763211 012 23479999999998764 5
Q ss_pred EEEEEeCCCeEEEEEcCCCeee
Q 008363 349 MVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.|+++|.|++|++||+.+++..
T Consensus 207 ~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 207 LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred eeeecCCCCcEEEEecccCCcc
Confidence 5899999999999999988765
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-07 Score=87.17 Aligned_cols=270 Identities=15% Similarity=0.187 Sum_probs=158.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC-cee----eEEeccCCccCCCCceEEEeecceecccccC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL-RTM----KAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~-~~~----~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+.+|.|...| .+|++|...|.|.+|.-... .|- ..+++|.. .+.++.. ..
T Consensus 28 ~ItaVefd~tg----------~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~-------------EFDYLkS-le 83 (460)
T COG5170 28 KITAVEFDETG----------LYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHEL-------------EFDYLKS-LE 83 (460)
T ss_pred eeeEEEecccc----------ceEeecCCCceEEEeecccccccchhhhhhhccccc-------------chhhhhh-cc
Confidence 56689999888 79999998999999976652 122 22222210 0000000 11
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC-------------------------------CC-----Cc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS-------------------------------ID-----SR 220 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~-------------------------------~~-----~~ 220 (568)
-...| ..+.|.-...-..++..+.|.+|++|.+...... .. ..
T Consensus 84 ieEKi-n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~ 162 (460)
T COG5170 84 IEEKI-NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK 162 (460)
T ss_pred HHHHh-hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec
Confidence 12345 7788873223346777888999999998755210 00 01
Q ss_pred eeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce--eeeCCCC-----CCeEEEEEcCCC-CE
Q 008363 221 PLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL--WDIHPAP-----KFIYGLDWLPDP-GC 291 (568)
Q Consensus 221 ~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~--~~~~~h~-----~~i~~l~~sp~~-~~ 291 (568)
+.+.+ .+|.--|.+|.|+.+. ..++++.+=.|-+|.+.-...+. ..+.+|. .-|++..|+|.. ..
T Consensus 163 p~rvyaNaH~yhiNSiS~NsD~------et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~ 236 (460)
T COG5170 163 PCRVYANAHPYHINSISFNSDK------ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNV 236 (460)
T ss_pred cceeccccceeEeeeeeecCch------heeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcce
Confidence 12222 4677779999999997 67777655569999987554333 3344443 457889999954 45
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCcccc--ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ--GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~--~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
+..++..|.|++-|+|....=. ...+.+. .... .+.-+.+-...|..+.|+++|++|++-+. -+|+|||+...+-
T Consensus 237 fmYSsSkG~Ikl~DlRq~alcd-n~~klfe-~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 237 FMYSSSKGEIKLNDLRQSALCD-NSKKLFE-LTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred EEEecCCCcEEehhhhhhhhcc-Cchhhhh-hccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 5566779999999998432100 0000000 0000 01122333467889999999999998774 4899999964321
Q ss_pred ec-c--------------CCCCCcceeeeecccCCCCceEEcccCCCCCcc
Q 008363 370 EK-D--------------HSRNRPMHFLCGSVTEDESAITVNTPLDNTPVP 405 (568)
Q Consensus 370 ~~-~--------------~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~ 405 (568)
.- . ++....-...-.+++-|+..+..|++..++-+.
T Consensus 314 pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 314 PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 10 0 000111111223567777777778777776443
No 266
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.70 E-value=1e-05 Score=75.87 Aligned_cols=186 Identities=13% Similarity=0.227 Sum_probs=108.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.-++|+ ||+.+||.+...|+|+++|+...... ...+...+. .-...|..+.|.+......=...|..-...| ++=
T Consensus 47 Rkl~WS--pD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWS--PDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEEC--CCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 679999 99999999999999999999754221 011111111 1235677777776542111012344455555 665
Q ss_pred EECCC----CCcceeee--C-CCCCCeEEEEEcCCCCEEEEEeC----CC-------cEEEEEcccccc---CCCCCCCC
Q 008363 261 WDIRD----PFRPLWDI--H-PAPKFIYGLDWLPDPGCVILSFD----DG-------AMRIVSLLKAAY---DVPATGKP 319 (568)
Q Consensus 261 wD~~~----~~~~~~~~--~-~h~~~i~~l~~sp~~~~l~s~~~----dg-------~I~lwd~~~~~~---~~~~~g~~ 319 (568)
|-+.. +.+..+.+ . .+...|+++.|+|..+.|++||. ++ -+..|.+-+... .+...+..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~ 203 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD 203 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc
Confidence 55422 22333333 2 34778999999999998888754 21 255666522110 00000000
Q ss_pred ccCc-c------ccceEEEe---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 320 FAGT-K------QQGLHLVN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 320 ~~~~-~------~~~l~~~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+... + .-.+..+. .....|..|..||+|..||+...+|.|.+|++-+-.+.+
T Consensus 204 ~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 204 ITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred ccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 0000 0 00111111 134679999999999999999999999999996654443
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.69 E-value=2.4e-06 Score=78.80 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=130.6
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEE-EccCCCCCEEEEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTME-WSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~-~s~~~~g~~l~sgs~ 201 (568)
.+||.|+..|...+|...+.+....+- ..|...| .-+. .+ .....+..++.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~c-------------------------d~snn~v-~~~~r~c--d~~~~~~i~sn 136 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQC-------------------------DVSNNDV-TLVKRYC--DLKFPLNIASN 136 (344)
T ss_pred cEEEeccccceeeeecccCcccceeee-------------------------cccccch-hhhhhhc--ccccceeeccC
Confidence 689999999999999998744332221 1222222 1111 00 12235777888
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCC--CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-e-eeCCC
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTL--PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-W-DIHPA 276 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~--~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-~-~~~~h 276 (568)
|.++++.++..+.. +.. .|.. .+.++++++++ .++++.++.. |.+|.+......+ . .....
T Consensus 137 dht~k~~~~~~~s~----~~~----~h~~~~~~ns~~~snd~------~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSN----KFA----VHNQNLTQNSLHYSNDP------SWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred CcceeEEEEecCcc----cce----eeccccceeeeEEcCCC------ceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 99999999875522 111 2322 37889999998 8999998887 9999887654322 2 23333
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC--CEEEEEe
Q 008363 277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT--GMVAYCS 354 (568)
Q Consensus 277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~--~~l~s~s 354 (568)
.+.-.+..|+.....++++..||++.|||+|...- +.. ..-.+-..|.+++..+.|++.| .+|+..-
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t-------pm~----~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE 271 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT-------PMA----EISSTRPHHNGAFRVCRFSLYGLLDLLFISE 271 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEeccccc-------chh----hhcccCCCCCCceEEEEecCCCcceEEEEec
Confidence 44457889999999999999999999999998552 111 1112334589999999999876 5566666
Q ss_pred CCCeEEEEEcCCCe
Q 008363 355 ADGTVHRFQLTAKA 368 (568)
Q Consensus 355 ~Dg~v~iwd~~~~~ 368 (568)
.=+.+.+-|+++.+
T Consensus 272 hfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 272 HFSRVHVVDTRNYV 285 (344)
T ss_pred CcceEEEEEcccCc
Confidence 66789999987654
No 268
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.69 E-value=5.6e-06 Score=95.44 Aligned_cols=165 Identities=9% Similarity=0.105 Sum_probs=106.0
Q ss_pred ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---------------CCCCeeEEEEccCCCCCC
Q 008363 182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---------------DTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------------h~~~V~~v~~~p~~~~~~ 245 (568)
|+.|+++ + ++.++++.+.++.|++||...+. +..+.+ .-.....|+|+|++
T Consensus 685 P~gVa~d--p~~g~LyVad~~~~~I~v~d~~~g~-------v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG---- 751 (1057)
T PLN02919 685 PWDVCFE--PVNEKVYIAMAGQHQIWEYNISDGV-------TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDL---- 751 (1057)
T ss_pred CeEEEEe--cCCCeEEEEECCCCeEEEEECCCCe-------EEEEecCCccccCCCCccccccccCccEEEEeCCC----
Confidence 4778888 6 56677777888999999987552 111111 11235679999998
Q ss_pred CCc-EEEEEcCCC-EEEEECCCCCcceee------------eCCC--------CCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363 246 SAN-VILTAGHGG-LKFWDIRDPFRPLWD------------IHPA--------PKFIYGLDWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 246 ~~~-~las~s~d~-v~lwD~~~~~~~~~~------------~~~h--------~~~i~~l~~sp~~~~l~s~~~dg~I~l 303 (568)
. ++++-+.++ |++||+.++...+.. +..+ -.....++++++|..+++-+.++.|++
T Consensus 752 --~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrv 829 (1057)
T PLN02919 752 --KELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKK 829 (1057)
T ss_pred --CEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEE
Confidence 5 555556666 999999865321110 0000 012358899999998888888999999
Q ss_pred EEccccccCCCCCCCCcc--Cccccce---EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 304 VSLLKAAYDVPATGKPFA--GTKQQGL---HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~--~~~~~~l---~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
||... +.... +...... ....++-.....|+++++|+++++-+.++.|++||+.++..
T Consensus 830 iD~~t--------g~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 830 LDPAT--------KRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCC--------CeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99843 21110 0000000 00111223567899999999999999999999999987654
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.1e-07 Score=95.42 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=122.4
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCC-CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDS-SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~-~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+.||...| ..++-- .+.+.+++++.|.+|++|.++.... .....+..++..|..+|.++.|-.+. .+++
T Consensus 730 nf~GH~~~i-Rai~Ai--dNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l------r~i~ 800 (1034)
T KOG4190|consen 730 NFTGHQEKI-RAIAAI--DNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL------RSIA 800 (1034)
T ss_pred cccCcHHHh-HHHHhc--ccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc------ceee
Confidence 347899888 776633 4667899999999999999975432 22345778999999999999999886 5666
Q ss_pred EEcCCCEEEEECCCCCcceeeeC--CCCCCeEEEEEcC--CCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 252 TAGHGGLKFWDIRDPFRPLWDIH--PAPKFIYGLDWLP--DPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 252 s~s~d~v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp--~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
++ +++|++||.--+ +++..+. ...+.+..+...| +...+++| +...+|+++|.|.-. .. .
T Consensus 801 Sc-D~giHlWDPFig-r~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce--------~~-----~ 865 (1034)
T KOG4190|consen 801 SC-DGGIHLWDPFIG-RLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE--------WT-----C 865 (1034)
T ss_pred ec-cCcceeeccccc-chhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc--------ce-----e
Confidence 54 334999998765 4443221 1122233333333 34455555 568999999997532 21 1
Q ss_pred ceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 327 GLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 327 ~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+... .+..+.+.++++.+.|+.++.+=..|.|.+.|.+++.+..
T Consensus 866 E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 866 ELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred eEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 11121 3445678999999999999999999999999999988654
No 270
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=4.5e-07 Score=88.19 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=103.0
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.+..+|.+ .+||++..+....++++...... .+++... ..-.. +++
T Consensus 67 ~~~~s~~~----------~llAv~~~~K~~~~f~~~~~~~~----------------~kl~~~~------~v~~~--~~a 112 (390)
T KOG3914|consen 67 LVLTSDSG----------RLVAVATSSKQRAVFDYRENPKG----------------AKLLDVS------CVPKR--PTA 112 (390)
T ss_pred ccccCCCc----------eEEEEEeCCCceEEEEEecCCCc----------------ceeeeEe------ecccC--cce
Confidence 46677777 79999988888878887662211 1111111 11111 245
Q ss_pred EEEccCCCCCEEEEEeCCC---eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 185 MEWSTSPPHDYLLAGCHDG---TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
+.|. .+......+..-| .+.+|....+ .+ ..+-||-+.+++|+|+|++ .+|+++..|. |++
T Consensus 113 i~~~--~~~~sv~v~dkagD~~~~di~s~~~~------~~-~~~lGhvSml~dVavS~D~------~~IitaDRDEkIRv 177 (390)
T KOG3914|consen 113 ISFI--REDTSVLVADKAGDVYSFDILSADSG------RC-EPILGHVSMLLDVAVSPDD------QFIITADRDEKIRV 177 (390)
T ss_pred eeee--eccceEEEEeecCCceeeeeeccccc------Cc-chhhhhhhhhheeeecCCC------CEEEEecCCceEEE
Confidence 5544 3444444444444 4444444422 23 3344999999999999998 8999999998 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
-........-...-||...|..++.-++ ..|+++|.|++|++||+++
T Consensus 178 s~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 178 SRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred EecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 8877653222334589999999998865 4589999999999999965
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=5e-07 Score=93.31 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=142.6
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
..++.|+... +++|.|+.||.++|..+.+...-....+ +.........+++.||...|
T Consensus 17 L~c~~WNke~----------gyIAcgG~dGlLKVlKl~t~t~d~~~~g-----------laa~snLsmNQtLeGH~~sV- 74 (1189)
T KOG2041|consen 17 LHCAEWNKES----------GYIACGGADGLLKVLKLGTDTTDLNKSG-----------LAAASNLSMNQTLEGHNASV- 74 (1189)
T ss_pred EEEEEEcccC----------CeEEeccccceeEEEEccccCCcccccc-----------cccccccchhhhhccCcceE-
Confidence 4589999988 7999999999999998877322211111 00011112344668999999
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
.-+.|+ .+.+.|-+...+|.|.+|-+..+.+ -....-....+-|.+++|+.+| ..|+..-.|| |.+=
T Consensus 75 ~vvTWN--e~~QKLTtSDt~GlIiVWmlykgsW----~EEMiNnRnKSvV~SmsWn~dG------~kIcIvYeDGavIVG 142 (1189)
T KOG2041|consen 75 MVVTWN--ENNQKLTTSDTSGLIIVWMLYKGSW----CEEMINNRNKSVVVSMSWNLDG------TKICIVYEDGAVIVG 142 (1189)
T ss_pred EEEEec--cccccccccCCCceEEEEeeecccH----HHHHhhCcCccEEEEEEEcCCC------cEEEEEEccCCEEEE
Confidence 999999 7778899999999999999987743 2222233456679999999999 7888888887 7766
Q ss_pred ECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe----cCCC
Q 008363 262 DIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN----CSSF 336 (568)
Q Consensus 262 D~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~----~h~~ 336 (568)
.+... +.. ..+.+ .....+.|++|.+.++.+-..|.+.+||.. |....--+..|.-... ....
T Consensus 143 svdGN-RIwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnq---------gnF~~Kl~~~c~Vn~tg~~s~~~~ 210 (1189)
T KOG2041|consen 143 SVDGN-RIWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQ---------GNFERKLEKDCEVNGTGIFSNFPT 210 (1189)
T ss_pred eeccc-eecchhcch--heccceeecccHHHHHhhhcCCcEEEeccc---------ccHHHhhhhceEEeeeeeecCCCc
Confidence 66543 211 22222 123578999999999998889999999973 2211101112211111 1112
Q ss_pred CEEEEEEe--------cCCCEEEEEeCCCeEEEEEc
Q 008363 337 AIWSVQVS--------RLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 337 ~V~~l~~s--------p~~~~l~s~s~Dg~v~iwd~ 364 (568)
.|..+.|. |+-..|+.|-..|.+.|..-
T Consensus 211 kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 211 KIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 24455554 46678999999998877644
No 272
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=0.00014 Score=70.40 Aligned_cols=213 Identities=13% Similarity=0.159 Sum_probs=135.4
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCC--CceeeEEeccCCccCCCCceEEEeeccee
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
..+.+.+. =|+|+|+. +.|.++-.+ |.|.-|.++. |..... ...
T Consensus 36 v~~~~npt-yl~~~~~~----------~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l--n~~------------------ 84 (346)
T COG2706 36 VAELGNPT-YLAVNPDQ----------RHLYVVNEPGEEGGVAAYRIDPDDGRLTFL--NRQ------------------ 84 (346)
T ss_pred ccccCCCc-eEEECCCC----------CEEEEEEecCCcCcEEEEEEcCCCCeEEEe--ecc------------------
Confidence 34444344 78999998 677777654 7788887775 332211 000
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCC----------eeEEEEcc
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLP----------IRAVSWAP 239 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V~~v~~~p 239 (568)
...++. +..|+.+ ++|++++++.. -|.|.++-++.... .........|.+. +....|.|
T Consensus 85 --~~~g~~---p~yvsvd--~~g~~vf~AnY~~g~v~v~p~~~dG~---l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP 154 (346)
T COG2706 85 --TLPGSP---PCYVSVD--EDGRFVFVANYHSGSVSVYPLQADGS---LQPVVQVVKHTGSGPHERQESPHVHSANFTP 154 (346)
T ss_pred --ccCCCC---CeEEEEC--CCCCEEEEEEccCceEEEEEcccCCc---cccceeeeecCCCCCCccccCCccceeeeCC
Confidence 002222 2567766 88988888765 68899999975321 1222233345555 88999999
Q ss_pred CCCCCCCCcEEEEEcCC--CEEEEECCCCCcc-e--eeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCC
Q 008363 240 AESDSDSANVILTAGHG--GLKFWDIRDPFRP-L--WDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDV 313 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d--~v~lwD~~~~~~~-~--~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~ 313 (568)
++ ++|++...+ .|.+|++..+... . ..+ .-...-..|.|+|++++.++.++ +++|-+|.....
T Consensus 155 ~~------~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~---- 223 (346)
T COG2706 155 DG------RYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA---- 223 (346)
T ss_pred CC------CEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC----
Confidence 99 899988665 5999999965311 1 112 22344689999999999999887 999999999652
Q ss_pred CCCCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363 314 PATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT 365 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~ 365 (568)
.|+.- ..+.+.++.. -......|..+++|++|.++.. ...|.+|.+.
T Consensus 224 --~g~~~---~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~ 274 (346)
T COG2706 224 --VGKFE---ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVD 274 (346)
T ss_pred --CceEE---EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 23321 1122222211 1234567899999999988752 3467777765
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.58 E-value=4e-06 Score=87.74 Aligned_cols=153 Identities=17% Similarity=0.325 Sum_probs=112.8
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
++.|+|.| +||.|+. ..|.|-|..+.+.++.+ .-|...| +.
T Consensus 20 A~Dw~~~G-----------LiAygsh-slV~VVDs~s~q~iqsi--------------------------e~h~s~V-~~ 60 (1062)
T KOG1912|consen 20 AADWSPSG-----------LIAYGSH-SLVSVVDSRSLQLIQSI--------------------------ELHQSAV-TS 60 (1062)
T ss_pred ccccCccc-----------eEEEecC-ceEEEEehhhhhhhhcc--------------------------ccCccce-eE
Confidence 78999998 8888876 57888898888887776 6677888 99
Q ss_pred EEEccCCC----------CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 185 MEWSTSPP----------HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 185 v~~s~~~~----------g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
|.|.|.|- .-+||++...|.|.+||+... ..+..+..|..++..+.|-+.. ..+..+|+...
T Consensus 61 VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~------s~~~~l~~~~~~~qdl~W~~~r--d~Srd~LlaIh 132 (1062)
T KOG1912|consen 61 VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA------SVINWLSHSNDSVQDLCWVPAR--DDSRDVLLAIH 132 (1062)
T ss_pred EEeccCCCchhccCccccceeEEeccccCcEEEEEehhh------hhhhhhcCCCcchhheeeeecc--CcchheeEEec
Confidence 99987432 126788888999999999876 5666778889999999998865 33445666665
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEE
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd 305 (568)
.-. |.+|+..++ ..++..........|+.+.| |.+.+...+..|.|.+-+
T Consensus 133 ~ss~lvLwntdtG-~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 133 GSSTLVLWNTDTG-EKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred CCcEEEEEEccCC-ceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEe
Confidence 555 999999988 66666554445556788888 455555555556555544
No 274
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=7.7e-05 Score=72.25 Aligned_cols=219 Identities=9% Similarity=0.108 Sum_probs=133.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
-+++++++ ++|+++.. -|.|.++-+.. |........... .+..+. . .....| +
T Consensus 93 yvsvd~~g----------~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h-~g~~p~-~---------rQ~~~h---~- 147 (346)
T COG2706 93 YVSVDEDG----------RFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH-TGSGPH-E---------RQESPH---V- 147 (346)
T ss_pred EEEECCCC----------CEEEEEEccCceEEEEEcccCCccccceeeeec-CCCCCC-c---------cccCCc---c-
Confidence 78999999 67777764 57899999876 332211100000 000000 0 000111 2
Q ss_pred eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~ 259 (568)
-+..+. |++++|++..- --.|.+|++..+.+.. .....+ .-...-+-|.|+|++ ++.....+ ++ |.
T Consensus 148 H~a~~t--P~~~~l~v~DLG~Dri~~y~~~dg~L~~--~~~~~v-~~G~GPRHi~FHpn~------k~aY~v~EL~stV~ 216 (346)
T COG2706 148 HSANFT--PDGRYLVVPDLGTDRIFLYDLDDGKLTP--ADPAEV-KPGAGPRHIVFHPNG------KYAYLVNELNSTVD 216 (346)
T ss_pred ceeeeC--CCCCEEEEeecCCceEEEEEcccCcccc--cccccc-CCCCCcceEEEcCCC------cEEEEEeccCCEEE
Confidence 556666 88988888753 2269999998664411 111122 334557899999999 67666655 56 99
Q ss_pred EEECCCCCcceeeeC---------CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 260 FWDIRDPFRPLWDIH---------PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 260 lwD~~~~~~~~~~~~---------~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+|........+..++ .-......|..+|||++|+++.. ...|.+|.+.. .+|++ ..+.
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~------~~g~L------~~~~ 284 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP------DGGKL------ELVG 284 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC------CCCEE------EEEE
Confidence 999887432222222 12345678999999999999855 45888888854 23433 2233
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCC-CeEEEEEcC--CCeeec
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSAD-GTVHRFQLT--AKAVEK 371 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~v~iwd~~--~~~~~~ 371 (568)
....+...-+.+.|++.+++|+++..+ ..|.+|..+ ++.+..
T Consensus 285 ~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 285 ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 334444556889999999999888865 458888764 444443
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.55 E-value=2.8e-07 Score=87.74 Aligned_cols=120 Identities=12% Similarity=0.245 Sum_probs=89.3
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGH 255 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~ 255 (568)
....| +++.|. ..+.++..|+.+|.|..+|++.... ..+.+.+.+ -|.+.|+++..-. ++ .+|.+.+.
T Consensus 251 sksDV-fAlQf~--~s~nLv~~GcRngeI~~iDLR~rnq-G~~~~a~rl-yh~Ssvtslq~Lq~s~------q~LmaS~M 319 (425)
T KOG2695|consen 251 SKSDV-FALQFA--GSDNLVFNGCRNGEIFVIDLRCRNQ-GNGWCAQRL-YHDSSVTSLQILQFSQ------QKLMASDM 319 (425)
T ss_pred cchhH-HHHHhc--ccCCeeEecccCCcEEEEEeeeccc-CCCcceEEE-EcCcchhhhhhhcccc------ceEeeccC
Confidence 45667 888987 5578999999999999999986522 223455555 5888999998777 44 56666666
Q ss_pred CC-EEEEECCCCCcc---eeeeCCCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 256 GG-LKFWDIRDPFRP---LWDIHPAPKFI--YGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 256 d~-v~lwD~~~~~~~---~~~~~~h~~~i--~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
++ |++||+|.. ++ +..+.+|-..- .-+...+....|+++|.|-..|||.++.
T Consensus 320 ~gkikLyD~R~~-K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ 377 (425)
T KOG2695|consen 320 TGKIKLYDLRAT-KCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDS 377 (425)
T ss_pred cCceeEeeehhh-hcccceeeeecccccccccccccccccceEEEccCeeEEEEEeccc
Confidence 66 999999976 55 67777775332 2334456778899999999999999953
No 276
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=2.4e-05 Score=81.43 Aligned_cols=190 Identities=9% Similarity=-0.028 Sum_probs=110.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT 178 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~ 178 (568)
.+....|+|++. ..++..+.+ ..|.++|+.+++..... ...
T Consensus 189 ~~~~p~wSpDG~---------~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---------------------------~~~ 232 (419)
T PRK04043 189 LNIFPKWANKEQ---------TAFYYTSYGERKPTLYKYNLYTGKKEKIA---------------------------SSQ 232 (419)
T ss_pred CeEeEEECCCCC---------cEEEEEEccCCCCEEEEEECCCCcEEEEe---------------------------cCC
Confidence 444899999993 235544433 46888899886544321 122
Q ss_pred CccceEEEEccCCCCCEEEEE-eCC--CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAG-CHD--GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sg-s~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+.. ...+|+ |||+.|+.. +.+ ..|.++|+.++ . ...+..+........|+|+| +.|+-.+.
T Consensus 233 g~~-~~~~~S--PDG~~la~~~~~~g~~~Iy~~dl~~g------~-~~~LT~~~~~d~~p~~SPDG------~~I~F~Sd 296 (419)
T PRK04043 233 GML-VVSDVS--KDGSKLLLTMAPKGQPDIYLYDTNTK------T-LTQITNYPGIDVNGNFVEDD------KRIVFVSD 296 (419)
T ss_pred CcE-EeeEEC--CCCCEEEEEEccCCCcEEEEEECCCC------c-EEEcccCCCccCccEECCCC------CEEEEEEC
Confidence 223 567898 888876644 334 45777777655 2 22333333333456899999 55554443
Q ss_pred -CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---------CcEEEEEccccccCCCCCCCCccC
Q 008363 256 -GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---------GAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 256 -d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---------g~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
.+ |.+.|+.++.....+..+. ....|+|||++|+..+.. ..|++.|+.. |..
T Consensus 297 r~g~~~Iy~~dl~~g~~~rlt~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~--------g~~--- 361 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSVEQVVFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS--------DYI--- 361 (419)
T ss_pred CCCCceEEEEECCCCCeEeCccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC--------CCe---
Confidence 32 8888988663222222221 124899999999887653 2577777732 322
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEeCC-C--eEEEEEcC
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-G--TVHRFQLT 365 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g--~v~iwd~~ 365 (568)
..+... .......|+|+|+.|+..+.+ + .|.+.++.
T Consensus 362 ------~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 362 ------RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred ------EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 222222 122357899999888776643 2 24555553
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.52 E-value=3.9e-07 Score=60.21 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=35.7
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
+++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34679999999999999999999999999999999997
No 278
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.52 E-value=5.2e-07 Score=82.78 Aligned_cols=72 Identities=18% Similarity=0.380 Sum_probs=64.8
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEcc
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~ 307 (568)
.|.+++-+|..+ +++++|+.|| +-+||.|....++..+..|..+|+.+.|+| ++..|++++.||.+--||..
T Consensus 181 ~v~~l~~hp~qq-----~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 181 AVTALCSHPAQQ-----HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred cchhhhCCcccc-----cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 389999999874 7888889999 999999998788888899999999999999 67899999999999999985
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.51 E-value=5.7e-07 Score=101.57 Aligned_cols=162 Identities=15% Similarity=0.309 Sum_probs=126.7
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+-..| .++. -+|..-+.++|+.||.|++|....+ ..+.+++ +..+.|+.+.|+..| +.+..+..
T Consensus 2207 ~v~~v-~r~~--sHp~~~~Yltgs~dgsv~~~~w~~~------~~v~~~rt~g~s~vtr~~f~~qG------nk~~i~d~ 2271 (2439)
T KOG1064|consen 2207 PVENV-RRMT--SHPSDPYYLTGSQDGSVRMFEWGHG------QQVVCFRTAGNSRVTRSRFNHQG------NKFGIVDG 2271 (2439)
T ss_pred ccCce-eeec--CCCCCceEEecCCCceEEEEeccCC------CeEEEeeccCcchhhhhhhcccC------Cceeeecc
Confidence 33445 5555 4466679999999999999998866 5555443 233789999999999 88888888
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
|| +.+|.+. + +++...+.|....+.+.|-. ..+++++ .++.+.+||.-... +. ..++
T Consensus 2272 dg~l~l~q~~-p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~------~~-------s~v~-- 2332 (2439)
T KOG1064|consen 2272 DGDLSLWQAS-P-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPP------MN-------SLVH-- 2332 (2439)
T ss_pred CCceeecccC-C-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCc------cc-------ceee--
Confidence 88 9999988 4 78888888998889999884 6667653 37899999984421 22 2233
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
.+|.+.++++++.|..++|++||.+|.|++||+...++...
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~ 2373 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHT 2373 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHH
Confidence 78999999999999999999999999999999976655443
No 280
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.51 E-value=1.5e-05 Score=79.06 Aligned_cols=146 Identities=12% Similarity=0.098 Sum_probs=103.3
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC-cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
..+|.++ |+-..+.-++ .-++.|..|| .|-|+|..+++..+.
T Consensus 355 qv~~~~~-VrY~r~~~~~----------e~~vigt~dgD~l~iyd~~~~e~kr~-------------------------- 397 (668)
T COG4946 355 QVGKKGG-VRYRRIQVDP----------EGDVIGTNDGDKLGIYDKDGGEVKRI-------------------------- 397 (668)
T ss_pred EcCCCCc-eEEEEEccCC----------cceEEeccCCceEEEEecCCceEEEe--------------------------
Confidence 3567774 4355555555 5688888999 899999998665433
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+.-+.| .++.-+ ++|.+++++.....|.+.|+.++ .....-+...+.|+.++|+|++ .+||-+
T Consensus 398 -e~~lg~I-~av~vs--~dGK~~vvaNdr~el~vididng------nv~~idkS~~~lItdf~~~~ns------r~iAYa 461 (668)
T COG4946 398 -EKDLGNI-EAVKVS--PDGKKVVVANDRFELWVIDIDNG------NVRLIDKSEYGLITDFDWHPNS------RWIAYA 461 (668)
T ss_pred -eCCccce-EEEEEc--CCCcEEEEEcCceEEEEEEecCC------CeeEecccccceeEEEEEcCCc------eeEEEe
Confidence 4455667 888877 89999999999999999999987 4444444556789999999998 899987
Q ss_pred cCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE
Q 008363 254 GHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 254 s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~ 295 (568)
--+ . |+++|+.++ +.. ......+.=.+-+|.||+++|..-
T Consensus 462 fP~gy~tq~Iklydm~~~-Kiy-~vTT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 462 FPEGYYTQSIKLYDMDGG-KIY-DVTTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred cCcceeeeeEEEEecCCC-eEE-EecCCcccccCcccCCCCcEEEEE
Confidence 543 3 999999875 222 222222223566777777666543
No 281
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.48 E-value=3.2e-06 Score=89.99 Aligned_cols=183 Identities=19% Similarity=0.191 Sum_probs=128.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..++.|+-...+..+|+.+.+..+.. .-....| +-+. .+++.+.+|...
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~--------------------------~v~a~~v-~imR----~Nnr~lf~G~t~ 196 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTT--------------------------NVSASGV-TIMR----YNNRNLFCGDTR 196 (1118)
T ss_pred cceeecchhhheeeeecccceeeeee--------------------------eccCCce-EEEE----ecCcEEEeeccc
Confidence 34555655566666777775544432 1111123 5555 357899999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---------CC-EEEEECCCCCcceee
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---------GG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---------d~-v~lwD~~~~~~~~~~ 272 (568)
|+|.+-|.++. +.++++.+|++.|.++.. .| ++|++||. |. |+|||+|.- +.+..
T Consensus 197 G~V~LrD~~s~------~~iht~~aHs~siSDfDv--~G------NlLitCG~S~R~~~l~~D~FvkVYDLRmm-ral~P 261 (1118)
T KOG1275|consen 197 GTVFLRDPNSF------ETIHTFDAHSGSISDFDV--QG------NLLITCGYSMRRYNLAMDPFVKVYDLRMM-RALSP 261 (1118)
T ss_pred ceEEeecCCcC------ceeeeeeccccceeeeec--cC------CeEEEeecccccccccccchhhhhhhhhh-hccCC
Confidence 99999999876 899999999999987654 45 68888865 56 899999976 55544
Q ss_pred eCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363 273 IHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351 (568)
Q Consensus 273 ~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~ 351 (568)
+.-+-++ .-+.|+|. ...+++++..|...+-|....+ .+. ..+..+......+..+++++++..|+
T Consensus 262 I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls-------NP~-----~~~~~v~p~~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 262 IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS-------NPP-----AGVKMVNPNGSGISAFDISSNGDALA 328 (1118)
T ss_pred cccccCc-hhhhhcccccceEEEEecccceeeccccccC-------CCc-----cceeEEccCCCcceeEEecCCCceEE
Confidence 4433333 55778885 3567778889999999953322 221 11223333445589999999999999
Q ss_pred EEeCCCeEEEEEc
Q 008363 352 YCSADGTVHRFQL 364 (568)
Q Consensus 352 s~s~Dg~v~iwd~ 364 (568)
.+..+|.|.+|--
T Consensus 329 fgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 329 FGDHEGHVNLWAD 341 (1118)
T ss_pred EecccCcEeeecC
Confidence 9999999999973
No 282
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=3e-07 Score=92.26 Aligned_cols=218 Identities=10% Similarity=0.107 Sum_probs=138.1
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecce
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
++..+.+|.. .|+.++-..+. +-+++++.|.+|++|.+.. +..+.+ ..
T Consensus 727 rL~nf~GH~~-~iRai~AidNE----------NSFiSASkDKTVKLWSik~EgD~~~t--------------------sa 775 (1034)
T KOG4190|consen 727 RLCNFTGHQE-KIRAIAAIDNE----------NSFISASKDKTVKLWSIKPEGDEIGT--------------------SA 775 (1034)
T ss_pred eeecccCcHH-HhHHHHhcccc----------cceeeccCCceEEEEEeccccCcccc--------------------ce
Confidence 4556778988 44466655555 6789999999999999976 222211 11
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCC
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
|.-+...|+.+| ..+.|- .+-++++++ ||.|.+||.--+ +++... ....+.+..|..-++-. .+
T Consensus 776 CQfTY~aHkk~i-~~igfL--~~lr~i~Sc--D~giHlWDPFig------r~Laq~~dapk~~a~~~ikcl~nv~---~~ 841 (1034)
T KOG4190|consen 776 CQFTYQAHKKPI-HDIGFL--ADLRSIASC--DGGIHLWDPFIG------RLLAQMEDAPKEGAGGNIKCLENVD---RH 841 (1034)
T ss_pred eeeEhhhccCcc-cceeee--eccceeeec--cCcceeeccccc------chhHhhhcCcccCCCceeEecccCc---ch
Confidence 333448899999 888887 565566554 899999997654 333211 12233344444444420 12
Q ss_pred cEEEEEcCCC-EEEEECCCCC-cceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 248 NVILTAGHGG-LKFWDIRDPF-RPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~-~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
-++|.++... |+++|.|... .+..... +-...+.+++..|.|+.++++-..|.|.+.|.|+ |+.+
T Consensus 842 iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~--------G~vI-- 911 (1034)
T KOG4190|consen 842 ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARN--------GKVI-- 911 (1034)
T ss_pred heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCC--------Ccee--
Confidence 3344445665 9999999764 2222222 3345578999999999999999999999999975 5443
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE-EEcCCCeee
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR-FQLTAKAVE 370 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i-wd~~~~~~~ 370 (568)
..+..-......++ .|..+.|+....|.++.+ |....+...
T Consensus 912 ------Nswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh 953 (1034)
T KOG4190|consen 912 ------NSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH 953 (1034)
T ss_pred ------ccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence 12222222222222 245567888888888888 877665443
No 283
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=9.9e-06 Score=81.90 Aligned_cols=153 Identities=15% Similarity=0.257 Sum_probs=95.2
Q ss_pred EEEEccCCCCCEEEEEe----------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 184 TMEWSTSPPHDYLLAGC----------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+-|. .+|++|+.-- .-..+-|+.++... -++..+ .-...|...+|-|.| +.|++-
T Consensus 398 kLhWQ--k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-----Ipve~v-elke~vi~FaWEP~g------dkF~vi 463 (698)
T KOG2314|consen 398 KLHWQ--KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-----IPVEVV-ELKESVIAFAWEPHG------DKFAVI 463 (698)
T ss_pred EEEec--cCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----CCceee-ecchheeeeeeccCC------CeEEEE
Confidence 45565 5666666421 12235566665442 233332 235678899999999 566554
Q ss_pred cCC---C-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCCCCEEEEE---eCCCcEEEEEccccccCCCCCCCCccCc
Q 008363 254 GHG---G-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPDPGCVILS---FDDGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 254 s~d---~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~~~~l~s~---~~dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
+.. . +.+|-+.+.. ..+..+. ....+.+.|+|.|++++.+ |..|.+.++|+.... .
T Consensus 464 ~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~--------~---- 529 (698)
T KOG2314|consen 464 SGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD--------L---- 529 (698)
T ss_pred EccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhh--------h----
Confidence 432 3 9999888432 2223333 3446899999999999887 458999999995411 0
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeC------CCeEEEEEcCCCe
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA------DGTVHRFQLTAKA 368 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~------Dg~v~iwd~~~~~ 368 (568)
+. .....|. ..+.+.|.|.|+|++|++. |.--+||++....
T Consensus 530 --k~-~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 530 --KD-TASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred --hh-ccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEeecHH
Confidence 00 0112233 3477899999999999985 5556777775443
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.44 E-value=1.2e-06 Score=90.62 Aligned_cols=159 Identities=17% Similarity=0.308 Sum_probs=120.4
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC---------ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS---------RPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~---------~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.|++|+ ....+||+|+.||.+++..+.+....... ..-+++.||++.|.-+.|+... +.|-|.
T Consensus 18 ~c~~WN--ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~------QKLTtS 89 (1189)
T KOG2041|consen 18 HCAEWN--KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN------QKLTTS 89 (1189)
T ss_pred EEEEEc--ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc------cccccc
Confidence 799999 77889999999999999988765432211 2234778999999999999997 788888
Q ss_pred cCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
..+| |.+|-+-.+..+-..+. ...+.|.+++|..||..|+....||.|.+=.+ .|..+++..++..
T Consensus 90 Dt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv---------dGNRIwgKeLkg~--- 157 (1189)
T KOG2041|consen 90 DTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV---------DGNRIWGKELKGQ--- 157 (1189)
T ss_pred CCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee---------ccceecchhcchh---
Confidence 8889 99999887743332222 33566799999999999999999999987666 3444332222221
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
....+.|++|...++.+-..|.+.++|.+.
T Consensus 158 -----~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 158 -----LLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred -----eccceeecccHHHHHhhhcCCcEEEecccc
Confidence 223678999998888888899999998753
No 285
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.44 E-value=3.2e-06 Score=79.46 Aligned_cols=223 Identities=13% Similarity=0.173 Sum_probs=136.0
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--------EEeccCC------------ccCCCCceE
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--------AIYLSSM------------KEGTDPRFV 162 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--------~l~~~~~------------~~~~~~~~v 162 (568)
|..+.|..++. +..+| ..+.|.+|+||.+....... .+..+.. .....+.++
T Consensus 88 in~I~w~~~t~-------r~hFL-lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~ii 159 (460)
T COG5170 88 INAIEWFDDTG-------RNHFL-LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEII 159 (460)
T ss_pred hhheeeecCCC-------cceEE-EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEE
Confidence 44899987762 33444 45678999999987632110 0000000 011223333
Q ss_pred EEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEE
Q 008363 163 KLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSW 237 (568)
Q Consensus 163 ~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~ 237 (568)
...|.. .....|.--| .++.++ .+...++++. |=.|.+|++.-... .-.+..++.|. .-|++..|
T Consensus 160 aa~p~r---vyaNaH~yhi-NSiS~N--sD~et~lSaD-dLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSaeF 229 (460)
T COG5170 160 AAKPCR---VYANAHPYHI-NSISFN--SDKETLLSAD-DLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSAEF 229 (460)
T ss_pred Eeccce---eccccceeEe-eeeeec--Cchheeeecc-ceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhccc
Confidence 333321 1224566667 888888 7766666664 77899999873311 12223344443 34888999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-----ee----------eCCCCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPL-----WD----------IHPAPKFIYGLDWLPDPGCVILSFDDGAM 301 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~-----~~----------~~~h~~~i~~l~~sp~~~~l~s~~~dg~I 301 (568)
+|... ++|.-.+..| |++-|+|....+. .. +.+-...|..+.|++.|++|++-.. -+|
T Consensus 230 hp~~c-----n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltv 303 (460)
T COG5170 230 HPEMC-----NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTV 303 (460)
T ss_pred CHhHc-----ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceE
Confidence 99873 5555555555 9999999543221 11 1122456788999999999887654 579
Q ss_pred EEEEccccccCCCCCCCCccCccccceEEEecCC------------CCE---EEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 302 RIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS------------FAI---WSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~------------~~V---~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+|||++... .|+.++.-|. ..| ..+.|+.+.+.+++|+.....-|+-.
T Consensus 304 kiwDvnm~k---------------~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 304 KIWDVNMAK---------------NPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred EEEeccccc---------------CCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 999997643 3344544332 233 34778888899999998888877764
No 286
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.43 E-value=4.4e-05 Score=71.73 Aligned_cols=166 Identities=16% Similarity=0.207 Sum_probs=104.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.++|||++ .+||.+...|+|+|||+.. ..+..+.+.....+ .-...| ..
T Consensus 48 kl~WSpD~----------tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~-------------------d~~~Ai-ag 96 (282)
T PF15492_consen 48 KLAWSPDC----------TLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPG-------------------DLSDAI-AG 96 (282)
T ss_pred EEEECCCC----------cEEEEEcCCCeEEEEeccc-ceeEEcCcccccCC-------------------ccccce-ee
Confidence 79999999 8999999999999999987 34444433211101 011122 22
Q ss_pred EEEccCC-C---CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 185 MEWSTSP-P---HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 185 v~~s~~~-~---g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
+.|.... + ...|++-..+|.++-|-+..+.. ...+....|. .+...|.++.++|.. ++|+.||.
T Consensus 97 l~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~-q~y~e~hsfsf~~~yp~Gi~~~vy~p~h------~LLlVgG~~~ 169 (282)
T PF15492_consen 97 LIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTN-QGYQENHSFSFSSHYPHGINSAVYHPKH------RLLLVGGCEQ 169 (282)
T ss_pred eEeeccccccccceeEEEEeccceeeeEEEEcccC-CcceeeEEEEecccCCCceeEEEEcCCC------CEEEEeccCC
Confidence 3332110 0 12566667788888887643211 0112223332 246789999999997 67766643
Q ss_pred --C--------CEEEEECCCCCcce--------------------e------ee---CCCCCCeEEEEEcCCCCEEEEEe
Q 008363 256 --G--------GLKFWDIRDPFRPL--------------------W------DI---HPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 256 --d--------~v~lwD~~~~~~~~--------------------~------~~---~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
+ |+..|.+-+.. |. . .+ ......|..|..||||..|++..
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~-Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDS-PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred CCCccccccccCceEEEEcCCC-CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 1 47788775441 10 0 00 12356789999999999999999
Q ss_pred CCCcEEEEEcccc
Q 008363 297 DDGAMRIVSLLKA 309 (568)
Q Consensus 297 ~dg~I~lwd~~~~ 309 (568)
.+|.|.||++...
T Consensus 249 ~sG~lsLW~iPsL 261 (282)
T PF15492_consen 249 FSGSLSLWEIPSL 261 (282)
T ss_pred cCCeEEEEecCcc
Confidence 9999999999553
No 287
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.42 E-value=5e-05 Score=75.57 Aligned_cols=146 Identities=16% Similarity=0.166 Sum_probs=106.5
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+|.+.| ....+. .++.-++.|..|| .|-|+|..++ .+..+...-+.|.++..+++| ++++.+
T Consensus 356 v~~~~~V-rY~r~~--~~~e~~vigt~dgD~l~iyd~~~~-------e~kr~e~~lg~I~av~vs~dG------K~~vva 419 (668)
T COG4946 356 VGKKGGV-RYRRIQ--VDPEGDVIGTNDGDKLGIYDKDGG-------EVKRIEKDLGNIEAVKVSPDG------KKVVVA 419 (668)
T ss_pred cCCCCce-EEEEEc--cCCcceEEeccCCceEEEEecCCc-------eEEEeeCCccceEEEEEcCCC------cEEEEE
Confidence 4566667 777766 5566899999999 9999999866 345566677889999999999 788887
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
.+.. |.+.|+.++. ....-....+-|+.++|||++++|+-+-- -..|++||+. .++.+
T Consensus 420 Ndr~el~vididngn-v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~--------~~Kiy-------- 482 (668)
T COG4946 420 NDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMD--------GGKIY-------- 482 (668)
T ss_pred cCceEEEEEEecCCC-eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecC--------CCeEE--------
Confidence 7777 9999999884 33223344567899999999999998754 4468999994 24332
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEe
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s 354 (568)
......+-=.+-+|.|++++|..-+
T Consensus 483 -~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 483 -DVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -EecCCcccccCcccCCCCcEEEEEe
Confidence 2222222234568999998887665
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.42 E-value=0.00015 Score=72.95 Aligned_cols=228 Identities=13% Similarity=0.123 Sum_probs=139.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC---------------cEEEEECCCCceeeEEeccCCc-----
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG---------------SLEVWEVPLLRTMKAIYLSSMK----- 154 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg---------------~V~iwd~~~~~~~~~l~~~~~~----- 154 (568)
..-|.. |..+.|+|.+ ++|.+-+..+ .+.+||+.++..+..+......
T Consensus 68 ~~~~~~--V~~~~fSP~~----------kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp 135 (561)
T COG5354 68 RFRHPD--VKYLDFSPNE----------KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWP 135 (561)
T ss_pred eeecCC--ceecccCccc----------ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccc
Confidence 355665 5589999999 8998876544 4999999998888776443220
Q ss_pred ----cCC-------CCceEEEeec---ceecccccCCcCccceEEEEccCCCCCEEEE-----EeCCCeEEEEEccCCCC
Q 008363 155 ----EGT-------DPRFVKLEPV---FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA-----GCHDGTVALWKFVASDS 215 (568)
Q Consensus 155 ----~~~-------~~~~v~~~~~---~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s-----gs~Dg~I~iwd~~~~~~ 215 (568)
+.. ....+.+..+ ........--...| ....|+|..++..||. ...+++++||.+...
T Consensus 136 ~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi-~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~-- 212 (561)
T COG5354 136 VLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGI-LDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN-- 212 (561)
T ss_pred eeeeeecchhhhhhccCeEEEEecCCccccCchhhccccce-eeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC--
Confidence 000 0011111111 00000000011334 6677886655556554 467889999999855
Q ss_pred CCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE------------cCCCEEEEECCCCCcceeeeCCCCCCeEEE
Q 008363 216 SIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA------------GHGGLKFWDIRDPFRPLWDIHPAPKFIYGL 283 (568)
Q Consensus 216 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~------------s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l 283 (568)
..+.+..-....=..+.|++.| ++|..- +...+.|++++....++ ...-.++|..+
T Consensus 213 ----s~l~tk~lfk~~~~qLkW~~~g------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V--~~~~~~pVhdf 280 (561)
T COG5354 213 ----SVLVTKNLFKVSGVQLKWQVLG------KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPV--EKDLKDPVHDF 280 (561)
T ss_pred ----CeeeeeeeEeecccEEEEecCC------ceEEEEEEEeeecccceeccceEEEEeecccccce--eccccccceee
Confidence 3332221112223467888888 554421 11238899988442233 22557899999
Q ss_pred EEcCCCCEEEEEe--CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---Ce
Q 008363 284 DWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GT 358 (568)
Q Consensus 284 ~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~ 358 (568)
+|.|+++.+++.+ .+-.+.++|++ |+. .+....+.=..+.|+|.+++++.++.| |.
T Consensus 281 ~W~p~S~~F~vi~g~~pa~~s~~~lr---------~Nl----------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gn 341 (561)
T COG5354 281 TWEPLSSRFAVISGYMPASVSVFDLR---------GNL----------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGN 341 (561)
T ss_pred eecccCCceeEEecccccceeecccc---------cce----------EEecCCcccccccccCcccEEEEecCCccccc
Confidence 9999888776654 48889999995 322 334445555778899999999998876 77
Q ss_pred EEEEEcCCCe
Q 008363 359 VHRFQLTAKA 368 (568)
Q Consensus 359 v~iwd~~~~~ 368 (568)
+-+|+.....
T Consensus 342 i~i~~~~~rf 351 (561)
T COG5354 342 IEIFDPAGRF 351 (561)
T ss_pred eEEeccCCce
Confidence 9999886543
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.42 E-value=0.00037 Score=69.92 Aligned_cols=220 Identities=15% Similarity=0.101 Sum_probs=128.0
Q ss_pred EccCCCCcccccCcccEEEEEeC----------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 108 WKPYNAVDCKCKQRLGYLAVLLG----------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 108 ~sp~~~~~~~~~~~~~~las~s~----------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
++|++ +.|+++.. +..|.+||..+.+.+..+..... +.. .
T Consensus 53 ~spDg----------~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~-----p~~-------------~-- 102 (352)
T TIGR02658 53 VASDG----------SFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG-----PRF-------------L-- 102 (352)
T ss_pred ECCCC----------CEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC-----chh-------------h--
Confidence 89998 55555554 88999999999998877633210 000 0
Q ss_pred cCccceEEEEccCCCCCEEEEEe-C-CCeEEEEEccCCCCCCCC---ceeEEe------------eCC----------CC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGC-H-DGTVALWKFVASDSSIDS---RPLLCF------------SAD----------TL 230 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs-~-Dg~I~iwd~~~~~~~~~~---~~~~~~------------~~h----------~~ 230 (568)
...-+..++++ ++|++|++.. . +..|.+.|+.+++..... .+...+ .+- ..
T Consensus 103 ~~~~~~~~~ls--~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~ 180 (352)
T TIGR02658 103 VGTYPWMTSLT--PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNP 180 (352)
T ss_pred ccCccceEEEC--CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCce
Confidence 00001345555 8888877665 3 678888888766431000 000000 000 00
Q ss_pred CeeEE--------------EEcc-CCCCCCCCcEEEEEcCCCEEEEECCCCC----cceeeeC-------CCCCCeEEEE
Q 008363 231 PIRAV--------------SWAP-AESDSDSANVILTAGHGGLKFWDIRDPF----RPLWDIH-------PAPKFIYGLD 284 (568)
Q Consensus 231 ~V~~v--------------~~~p-~~~~~~~~~~las~s~d~v~lwD~~~~~----~~~~~~~-------~h~~~i~~l~ 284 (568)
.+... .|.+ ++ .++.....+.|.+.|+.... .+...+. -..+.+.-++
T Consensus 181 ~~~~~~vf~~~~~~v~~rP~~~~~dg------~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 181 KIKPTEVFHPEDEYLINHPAYSNKSG------RLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred EEeeeeeecCCccccccCCceEcCCC------cEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 01111 1223 44 55555555339999965432 2222221 1234445699
Q ss_pred EcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEE
Q 008363 285 WLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYC 353 (568)
Q Consensus 285 ~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~ 353 (568)
++|+++.+++... .+.|.++|..+ ++.+ ..+. -...++.++++|+++ +|++.
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t--------~kvi--------~~i~-vG~~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT--------GKRL--------RKIE-LGHEIDSINVSQDAKPLLYAL 317 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCC--------CeEE--------EEEe-CCCceeeEEECCCCCeEEEEe
Confidence 9999999988532 25799999843 4332 3443 245789999999998 77766
Q ss_pred e-CCCeEEEEEcCCCeeeccC-CCCCcceee
Q 008363 354 S-ADGTVHRFQLTAKAVEKDH-SRNRPMHFL 382 (568)
Q Consensus 354 s-~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~ 382 (568)
. .++.|.++|+.+++..+.. ...+.|.++
T Consensus 318 n~~s~~VsViD~~t~k~i~~i~~vg~~P~~~ 348 (352)
T TIGR02658 318 STGDKTLYIFDAETGKELSSVNQLGRGPQVI 348 (352)
T ss_pred CCCCCcEEEEECcCCeEEeeeccCCCCCeEE
Confidence 6 6788999999988777664 333444443
No 290
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=8.5e-07 Score=58.58 Aligned_cols=38 Identities=18% Similarity=0.367 Sum_probs=35.8
Q ss_pred cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363 268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 268 ~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd 305 (568)
.++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46778899999999999999999999999999999997
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.38 E-value=0.00011 Score=83.33 Aligned_cols=222 Identities=13% Similarity=0.207 Sum_probs=132.6
Q ss_pred CCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------ccCCCCc
Q 008363 99 NGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------KEGTDPR 160 (568)
Q Consensus 99 ~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------~~~~~~~ 160 (568)
+.|+. +++||||+ .+||..+.+|+|.+-+ .+...+....-+.. .-|+..+
T Consensus 120 d~GI~-a~~WSPD~----------Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK 187 (928)
T PF04762_consen 120 DSGIL-AASWSPDE----------ELLALVTGEGNLLLMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGK 187 (928)
T ss_pred cCcEE-EEEECCCc----------CEEEEEeCCCEEEEEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhh
Confidence 44455 99999999 7999999999988864 23333333322211 1111111
Q ss_pred eEE---Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeC---C---CeEEEEEccCCCCCCCCceeEEeeCCC
Q 008363 161 FVK---LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH---D---GTVALWKFVASDSSIDSRPLLCFSADT 229 (568)
Q Consensus 161 ~v~---~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~---D---g~I~iwd~~~~~~~~~~~~~~~~~~h~ 229 (568)
... ..|... -..... +...- ..|+|- .||.++|+.+- . ..|+||+-. + ....+-..-.
T Consensus 188 ~aa~~~~~p~~~~~d~~~~s-~dd~~-~~ISWR--GDG~yFAVss~~~~~~~~R~iRVy~Re-G------~L~stSE~v~ 256 (928)
T PF04762_consen 188 AAARQLRDPTVPKVDEGKLS-WDDGR-VRISWR--GDGEYFAVSSVEPETGSRRVIRVYSRE-G------ELQSTSEPVD 256 (928)
T ss_pred hhhhhccCCCCCccccCccc-cCCCc-eEEEEC--CCCcEEEEEEEEcCCCceeEEEEECCC-c------eEEeccccCC
Confidence 100 000000 000011 22233 689999 99999998875 3 478999865 3 2222222223
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcC--C-C-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGH--G-G-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~--d-~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~l 303 (568)
+--.+++|.|.| ++||+... + . |.+|.-..-..--+.+. .....|..|.|++|+..|+....|. |.|
T Consensus 257 gLe~~l~WrPsG------~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqL 329 (928)
T PF04762_consen 257 GLEGALSWRPSG------NLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQL 329 (928)
T ss_pred CccCCccCCCCC------CEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceE
Confidence 334578999999 89999865 2 3 88887654322223333 3456789999999999999977655 999
Q ss_pred EEccccccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
|-..+.. .+ ++ +.+.. ....+..+.|+|.. ..|...+.+|.+..+++
T Consensus 330 Wt~~NYH--------WY----LK--qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 330 WTRSNYH--------WY----LK--QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred EEeeCCE--------EE----EE--EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 9884421 10 01 12221 22334559999975 56777777788877766
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=8.1e-06 Score=80.54 Aligned_cols=215 Identities=11% Similarity=0.001 Sum_probs=138.6
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH- 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~- 201 (568)
.++.+++.||.++.|--..-.-+ .+...+..|...| .+++-+ -+|.++.|++.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGv-----------------------EfVKhFraHL~~I-~sl~~S--~dg~L~~Sv~d~ 74 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGV-----------------------EFVKHFRAHLGVI-LSLAVS--YDGWLFRSVEDP 74 (558)
T ss_pred heEEeeecchhhhhcCCCCccce-----------------------eehhhhHHHHHHH-Hhhhcc--ccceeEeeccCc
Confidence 69999999999999975431111 1122335677777 777765 78888899888
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcce-eeeCCCCC
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPL-WDIHPAPK 278 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~-~~~~~h~~ 278 (568)
|..++++|+..-.. .....+.--.+.+..+ .++.. .-..||.... ++ +.++|-+....+. ..-.-|..
T Consensus 75 Dhs~KvfDvEn~Dm----inmiKL~~lPg~a~wv-~skGd----~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 75 DHSVKVFDVENFDM----INMIKLVDLPGFAEWV-TSKGD----KISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred ccceeEEEeeccch----hhhcccccCCCceEEe-cCCCC----eeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 99999999975421 1111111112222211 22221 0124444444 46 9999988775333 44456899
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
+|..+.++|-+..+++....|.|.-|.... .+..|. ++.....+ ..-+..+........++.|+|++..+.+-+.|.
T Consensus 146 PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr-~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~Dr 223 (558)
T KOG0882|consen 146 PVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPR-TNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDR 223 (558)
T ss_pred ceEEEEeeccccceeeccccceeEeecCCC-cccCcc-ccccccccccchhhcccccccCccceEEccccCcccccCccc
Confidence 999999999999999998899999998852 111111 11111011 111223334456678999999999999999999
Q ss_pred eEEEEEcCCCeeeccCC
Q 008363 358 TVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 358 ~v~iwd~~~~~~~~~~~ 374 (568)
.|+++.+.++++.+...
T Consensus 224 kVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 224 KVRGFVFKTGKLVQEID 240 (558)
T ss_pred EEEEEEeccchhhhhhh
Confidence 99999999998765443
No 293
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.33 E-value=0.0006 Score=65.85 Aligned_cols=201 Identities=14% Similarity=0.079 Sum_probs=122.5
Q ss_pred EEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 105 DVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 105 ~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
.+.|.+ ++ .++++-...+.|..|+..++.....- ... +.
T Consensus 4 gp~~d~~~g----------~l~~~D~~~~~i~~~~~~~~~~~~~~--------------------------~~~----~~ 43 (246)
T PF08450_consen 4 GPVWDPRDG----------RLYWVDIPGGRIYRVDPDTGEVEVID--------------------------LPG----PN 43 (246)
T ss_dssp EEEEETTTT----------EEEEEETTTTEEEEEETTTTEEEEEE--------------------------SSS----EE
T ss_pred ceEEECCCC----------EEEEEEcCCCEEEEEECCCCeEEEEe--------------------------cCC----Cc
Confidence 567888 55 67777777899999999885543210 111 25
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--C-CCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--A-DTLPIRAVSWAPAESDSDSANVILTAGHG---- 256 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~-h~~~V~~v~~~p~~~~~~~~~~las~s~d---- 256 (568)
.+.+.. ++ ..|+.+..++ +.++|+.++. ...+.... . .....+++++.++| +++++....
T Consensus 44 G~~~~~-~~-g~l~v~~~~~-~~~~d~~~g~----~~~~~~~~~~~~~~~~~ND~~vd~~G------~ly~t~~~~~~~~ 110 (246)
T PF08450_consen 44 GMAFDR-PD-GRLYVADSGG-IAVVDPDTGK----VTVLADLPDGGVPFNRPNDVAVDPDG------NLYVTDSGGGGAS 110 (246)
T ss_dssp EEEEEC-TT-SEEEEEETTC-EEEEETTTTE----EEEEEEEETTCSCTEEEEEEEE-TTS-------EEEEEECCBCTT
T ss_pred eEEEEc-cC-CEEEEEEcCc-eEEEecCCCc----EEEEeeccCCCcccCCCceEEEcCCC------CEEEEecCCCccc
Confidence 555541 34 4666666554 5555887662 23333332 1 34568899999999 777776543
Q ss_pred ----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 257 ----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 257 ----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+ |..++.. + ...... ..-...+.|+|+|+++.|+.+ +..+.|..|++.... +... ....+..
T Consensus 111 ~~~~g~v~~~~~~-~-~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~------~~~~---~~~~~~~ 178 (246)
T PF08450_consen 111 GIDPGSVYRIDPD-G-KVTVVA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG------GELS---NRRVFID 178 (246)
T ss_dssp CGGSEEEEEEETT-S-EEEEEE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT------CCEE---EEEEEEE
T ss_pred cccccceEEECCC-C-eEEEEe-cCcccccceEECCcchheeecccccceeEEEeccccc------ccee---eeeeEEE
Confidence 4 6666666 2 222222 223446899999999988765 568889999985311 1110 0011112
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+....+..-.+++..+|.+.++.-..+.|.+++.+ +++..
T Consensus 179 ~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~ 218 (246)
T PF08450_consen 179 FPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLR 218 (246)
T ss_dssp -SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEE
T ss_pred cCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEE
Confidence 22222347889999999988888889999999987 54443
No 294
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=1.2e-06 Score=92.63 Aligned_cols=195 Identities=13% Similarity=0.102 Sum_probs=132.7
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
+..|+.... +++|+-.. +.|++|+..|.|++|++.+|......
T Consensus 1097 frd~~~~fT-c~afs~~~----------~hL~vG~~~Geik~~nv~sG~~e~s~-------------------------- 1139 (1516)
T KOG1832|consen 1097 FRDETALFT-CIAFSGGT----------NHLAVGSHAGEIKIFNVSSGSMEESV-------------------------- 1139 (1516)
T ss_pred hhcccccee-eEEeecCC----------ceEEeeeccceEEEEEccCccccccc--------------------------
Confidence 445666455 99999988 79999999999999999998776554
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+|...| +-|. |+.+|..+++.+.-. -..+|++... ..+.+.|.. -.++.|+.... ..++.
T Consensus 1140 ncH~Sav-T~ve--Ps~dgs~~Ltsss~S~PlsaLW~~~s~-----~~~~Hsf~e----d~~vkFsn~~q-----~r~~g 1202 (1516)
T KOG1832|consen 1140 NCHQSAV-TLVE--PSVDGSTQLTSSSSSSPLSALWDASST-----GGPRHSFDE----DKAVKFSNSLQ-----FRALG 1202 (1516)
T ss_pred ccccccc-cccc--ccCCcceeeeeccccCchHHHhccccc-----cCccccccc----cceeehhhhHH-----HHHhc
Confidence 6788888 8888 768888777655433 4679998753 356666633 46788888751 23333
Q ss_pred EcCCCEEEEECCCCCcceee-eCC---CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 253 AGHGGLKFWDIRDPFRPLWD-IHP---APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 253 ~s~d~v~lwD~~~~~~~~~~-~~~---h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+..|...+||+.+. .++.+ +.+ ....-++..|+|+...|+- || .+||+|.. +.+
T Consensus 1203 t~~d~a~~YDvqT~-~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~----------------~aI 1260 (1516)
T KOG1832|consen 1203 TEADDALLYDVQTC-SPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVRIP----------------EAI 1260 (1516)
T ss_pred ccccceEEEecccC-cHHHHhcCcchhhhhhccccccCCCcceEee---Cc--eeeeeccH----------------HHH
Confidence 34455999999998 44433 322 2222378899999886653 44 37999762 223
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+.|..-+..+ .=.|+|.|.-++.-+ -|||+.+.++..
T Consensus 1261 h~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1261 HRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLH 1297 (1516)
T ss_pred hhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHh
Confidence 4443332221 225999998888776 489998766544
No 295
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=5.3e-07 Score=92.45 Aligned_cols=191 Identities=17% Similarity=0.320 Sum_probs=123.9
Q ss_pred cEEEEEeCCCcEEEEECCCCcee-eEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTM-KAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
.++++|..+|.|-+-.+...... ..+ ..+|... |++++|++. |.++||+|-.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~-------------------------tp~~ar~-Ct~lAwneL-Dtn~LAagld 123 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEV-------------------------TPGYARP-CTSLAWNEL-DTNHLAAGLD 123 (783)
T ss_pred hhhhhccccCceEEeecCCccccccee-------------------------ccccccc-ccccccccc-cHHHHHhhhh
Confidence 58999999999999888763322 110 1345555 599999966 5567888743
Q ss_pred ----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363 202 ----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA 276 (568)
Q Consensus 202 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h 276 (568)
|-.+.|||+.+........+.. ..+-.....+++|..+. .++.+|.... +.++|+|........+.
T Consensus 124 khrnds~~~Iwdi~s~ltvPke~~~f-s~~~l~gqns~cwlrd~------klvlaGm~sr~~~ifdlRqs~~~~~svn-- 194 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLTVPKESPLF-SSSTLDGQNSVCWLRDT------KLVLAGMTSRSVHIFDLRQSLDSVSSVN-- 194 (783)
T ss_pred hhcccCCccceecccccCCCcccccc-ccccccCccccccccCc------chhhcccccchhhhhhhhhhhhhhhhhh--
Confidence 5679999998663211111111 11233456688888776 7888888776 99999995433333332
Q ss_pred CCCeEEEEEcC-CCCEEEEEeCCCcEEEEE-ccccccCCCCCCCCccCccccceEEEecCC----CCEEEEEEecCC-CE
Q 008363 277 PKFIYGLDWLP-DPGCVILSFDDGAMRIVS-LLKAAYDVPATGKPFAGTKQQGLHLVNCSS----FAIWSVQVSRLT-GM 349 (568)
Q Consensus 277 ~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd-~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~----~~V~~l~~sp~~-~~ 349 (568)
+..+..+...| .+.++++- .||.|.+|| .++.. .++..+.... ..+..++|+|.. .+
T Consensus 195 Tk~vqG~tVdp~~~nY~cs~-~dg~iAiwD~~rnie---------------npl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 195 TKYVQGITVDPFSPNYFCSN-SDGDIAIWDTYRNIE---------------NPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhcccceecCCCCCceecc-ccCceeeccchhhhc---------------cHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 34566777888 55655554 499999999 65544 1222222222 248899999984 67
Q ss_pred EEEEeCC-CeEEEEEcC
Q 008363 350 VAYCSAD-GTVHRFQLT 365 (568)
Q Consensus 350 l~s~s~D-g~v~iwd~~ 365 (568)
+++++.| ++|+++++.
T Consensus 259 la~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhhccCcceEEEeccc
Confidence 7777765 789999885
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.30 E-value=6.1e-05 Score=69.78 Aligned_cols=156 Identities=8% Similarity=-0.042 Sum_probs=105.3
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.+++++ +++.++++.+....|..|.+..... ..+. .....+..=.+..|+... ..||++..|+ +.|
T Consensus 162 ns~~~s--nd~~~~~~Vgds~~Vf~y~id~~se----y~~~~~~a~t~D~gF~~S~s~~~------~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 162 NSLHYS--NDPSWGSSVGDSRRVFRYAIDDESE----YIENIYEAPTSDHGFYNSFSEND------LQFAVVFQDGTCAI 229 (344)
T ss_pred eeeEEc--CCCceEEEecCCCcceEEEeCCccc----eeeeeEecccCCCceeeeeccCc------ceEEEEecCCcEEE
Confidence 677877 8899999999999999999986522 3333 233344556778899888 8999999999 999
Q ss_pred EECCCCCcceeee----CCCCCCeEEEEEcCCCC--EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE----E
Q 008363 261 WDIRDPFRPLWDI----HPAPKFIYGLDWLPDPG--CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH----L 330 (568)
Q Consensus 261 wD~~~~~~~~~~~----~~h~~~i~~l~~sp~~~--~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~----~ 330 (568)
||+|....++... ..|.+.+..+.|++-|. +|+.+-.-+.+.+.|+|+.. -. +.+. .
T Consensus 230 ~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~--------~~-----q~I~i~~d~ 296 (344)
T KOG4532|consen 230 YDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV--------NH-----QVIVIPDDV 296 (344)
T ss_pred EEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc--------ee-----eEEecCccc
Confidence 9999876555333 35889999999998663 34444446789999998643 11 1111 1
Q ss_pred EecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 331 VNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 331 ~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+..|. ..|..-.|+.++.-+.+.+++ .+.=|++
T Consensus 297 ~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni 330 (344)
T KOG4532|consen 297 ERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNI 330 (344)
T ss_pred cccccccccccccccCCCcccccccch-hhheeec
Confidence 12233 337777777776555554433 2334444
No 297
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.29 E-value=0.00059 Score=79.07 Aligned_cols=226 Identities=12% Similarity=0.125 Sum_probs=127.8
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.+++++.+. .++++-+.++.|++||... ..+..+.+ ....+..++.+. ..+... |..
T Consensus 572 gvavd~~~g---------~lyVaDs~n~rI~v~d~~G-~~i~~ig~-~g~~G~~dG~~~-----------~a~f~~-P~G 628 (1057)
T PLN02919 572 KLAIDLLNN---------RLFISDSNHNRIVVTDLDG-NFIVQIGS-TGEEGLRDGSFE-----------DATFNR-PQG 628 (1057)
T ss_pred eEEEECCCC---------eEEEEECCCCeEEEEeCCC-CEEEEEcc-CCCcCCCCCchh-----------ccccCC-CcE
Confidence 577877542 5777778889999999864 44433321 111111111100 011112 477
Q ss_pred EEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCCCceeEEeeCC-----------------CCCeeEEEEccCCCCCCC
Q 008363 185 MEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSIDSRPLLCFSAD-----------------TLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 185 v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----------------~~~V~~v~~~p~~~~~~~ 246 (568)
|++. ++++.|+++ ...+.|+++|+.++ .+.++.+- -.....|+|+|++
T Consensus 629 Iavd--~~gn~LYVaDt~n~~Ir~id~~~~-------~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~----- 694 (1057)
T PLN02919 629 LAYN--AKKNLLYVADTENHALREIDFVNE-------TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVN----- 694 (1057)
T ss_pred EEEe--CCCCEEEEEeCCCceEEEEecCCC-------EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCC-----
Confidence 8887 667665554 44578999998754 22222110 1124689999943
Q ss_pred CcEEEEEcCCC-EEEEECCCCCcceee-------eCCC------CCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcccccc
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFRPLWD-------IHPA------PKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAY 311 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~~~~~-------~~~h------~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~ 311 (568)
..++++.+.+. |++||..++...... ..++ -...+.|+|+|++..|+++ +.++.|++||+.....
T Consensus 695 g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~ 774 (1057)
T PLN02919 695 EKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS 774 (1057)
T ss_pred CeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 16777777766 999998765221111 0011 1234679999999866655 5579999999853110
Q ss_pred CCCCCCCCccCccccceEEEec--------CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 312 DVPATGKPFAGTKQQGLHLVNC--------SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~--------h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.....|.... ...+..+.. .-....+++|+++|.++++-+.++.|++||..++.+.
T Consensus 775 ~~~~gg~~~~---~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 775 RLLAGGDPTF---SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred EEEEeccccc---CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 0000000000 000001100 1112368899999999999999999999999877654
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.28 E-value=0.00055 Score=71.31 Aligned_cols=178 Identities=11% Similarity=0.104 Sum_probs=107.8
Q ss_pred eEEEEccCCCCCE-EEEEeCC---CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--
Q 008363 183 LTMEWSTSPPHDY-LLAGCHD---GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-- 256 (568)
Q Consensus 183 ~~v~~s~~~~g~~-l~sgs~D---g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-- 256 (568)
....|+ |+|+. ++..+.+ ..|.++|+.++ +..... ...+......|+|+|. .++++.+.+
T Consensus 191 ~~p~wS--pDG~~~i~y~s~~~~~~~Iyv~dl~tg------~~~~lt-~~~g~~~~~~~SPDG~-----~la~~~~~~g~ 256 (419)
T PRK04043 191 IFPKWA--NKEQTAFYYTSYGERKPTLYKYNLYTG------KKEKIA-SSQGMLVVSDVSKDGS-----KLLLTMAPKGQ 256 (419)
T ss_pred EeEEEC--CCCCcEEEEEEccCCCCEEEEEECCCC------cEEEEe-cCCCcEEeeEECCCCC-----EEEEEEccCCC
Confidence 788999 88874 6544443 45888888766 322222 2355566788999992 344444433
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
. |.++|+.++ . ...+..+........|+|||+.|+..+. .+ .|+++|+. +|+.. .+ ++.
T Consensus 257 ~~Iy~~dl~~g-~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~--------~g~~~------rl-t~~ 319 (419)
T PRK04043 257 PDIYLYDTNTK-T-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN--------SGSVE------QV-VFH 319 (419)
T ss_pred cEEEEEECCCC-c-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECC--------CCCeE------eC-ccC
Confidence 4 888898765 2 3334433433346689999998888765 33 56667773 23321 11 112
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCC---------CeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSAD---------GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~D---------g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
+. ....|+|+|++|+..+.. ..|.+.|+.++....-... . .....+++++|..|...+.
T Consensus 320 g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 320 GK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEc
Confidence 22 124899999988877654 3688888887765433221 1 1112467888888776543
No 299
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.25 E-value=6.5e-05 Score=75.51 Aligned_cols=140 Identities=16% Similarity=0.244 Sum_probs=101.9
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+-.++| ..+.|.|..++--+++|..+-++.++|++.. .. +..-...=+.+.|+|.+ ++++.++-
T Consensus 272 ~~~~pV-hdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-------l~--~~~Pe~~rNT~~fsp~~------r~il~agF 335 (561)
T COG5354 272 DLKDPV-HDFTWEPLSSRFAVISGYMPASVSVFDLRGN-------LR--FYFPEQKRNTIFFSPHE------RYILFAGF 335 (561)
T ss_pred cccccc-eeeeecccCCceeEEecccccceeecccccc-------eE--EecCCcccccccccCcc------cEEEEecC
Confidence 456788 9999995544434556678999999999843 22 22345556778899998 88888877
Q ss_pred C---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCccc
Q 008363 256 G---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 256 d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
| + |-+||..+...++..+.+.. ..-+.|+||++++.+... |..|.|||+ .|..+
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v---------~g~~~----- 399 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV---------YGAKV----- 399 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEe---------cCchh-----
Confidence 6 5 99999998766665665433 356789999999988632 889999999 34321
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
...+.+.|.|.+++..+.+.+.
T Consensus 400 ----------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 400 ----------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ----------hhhhhccccCCcccceeeccCC
Confidence 1557788999888888887665
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=2.9e-05 Score=82.05 Aligned_cols=170 Identities=13% Similarity=0.118 Sum_probs=116.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
+|.+++ +.+|+-|+.+|.|++++.... + .+...|+.. .-.| .+++||+.|| |.|-
T Consensus 43 s~~av~----~~~~~~GtH~g~v~~~~~~~~-------~-~~~~~~s~~------~~~G------ey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 43 SCCAVH----DKFFALGTHRGAVYLTTCQGN-------P-KTNFDHSSS------ILEG------EYVASCSDDGKVVIG 98 (846)
T ss_pred HHHHhh----cceeeeccccceEEEEecCCc-------c-ccccccccc------ccCC------ceEEEecCCCcEEEe
Confidence 667766 579999999999999998733 3 333345443 4556 8999999999 9998
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF 336 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~ 336 (568)
.+-+.. ....+ ....++.+++++|+ .+.+++||.-| +.++.-+-+.+ . .. ..+..-.+
T Consensus 99 sl~~~~-~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-------k------~~-v~l~~~eG 161 (846)
T KOG2066|consen 99 SLFTDD-EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-------K------DS-VVLSEGEG 161 (846)
T ss_pred eccCCc-cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-------c------cc-eeeecCcc
Confidence 888763 33222 23678999999998 56789999888 88887644331 1 11 13455678
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec----cCCCCCcceeeeecccCCCCceEEc
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK----DHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
+|.++.| .|.+||-++.+| |+|||+.++.... .....|...+.|...-.++..+.+|
T Consensus 162 ~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 162 PIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred ceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 9999999 578888887665 8999998765432 2122333445555455566666664
No 301
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=2.5e-06 Score=90.38 Aligned_cols=188 Identities=12% Similarity=0.138 Sum_probs=129.7
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
..|+... +|++|+ .+.++|++|+..|.|+++++.++ ........|.++|+-|.=+.+|+ ..|.+++
T Consensus 1098 rd~~~~f-Tc~afs--~~~~hL~vG~~~Geik~~nv~sG------~~e~s~ncH~SavT~vePs~dgs-----~~Ltsss 1163 (1516)
T KOG1832|consen 1098 RDETALF-TCIAFS--GGTNHLAVGSHAGEIKIFNVSSG------SMEESVNCHQSAVTLVEPSVDGS-----TQLTSSS 1163 (1516)
T ss_pred hccccce-eeEEee--cCCceEEeeeccceEEEEEccCc------cccccccccccccccccccCCcc-----eeeeecc
Confidence 6777777 999999 77789999999999999999987 66667789999999999888883 3344444
Q ss_pred CCC--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 255 HGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 255 ~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
... ..+|++.....+.+.+.. -.++.|+..-..-+.|+......|||+. ++.++. ..+....
T Consensus 1164 ~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvq--------T~~~l~----tylt~~~ 1227 (1516)
T KOG1832|consen 1164 SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQ--------TCSPLQ----TYLTDTV 1227 (1516)
T ss_pred ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcccccceEEEecc--------cCcHHH----HhcCcch
Confidence 443 889999876666666643 2577888766656666666678899994 454442 1112222
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
+....-+++.|+|+..+|+- || .+||+........ -.+.....-|.|.+.|..++|++-.
T Consensus 1228 ~~~y~~n~a~FsP~D~LIln---dG--vLWDvR~~~aIh~--FD~ft~~~~G~FHP~g~eVIINSEI 1287 (1516)
T KOG1832|consen 1228 TSSYSNNLAHFSPCDTLILN---DG--VLWDVRIPEAIHR--FDQFTDYGGGGFHPSGNEVIINSEI 1287 (1516)
T ss_pred hhhhhccccccCCCcceEee---Cc--eeeeeccHHHHhh--hhhheecccccccCCCceEEeechh
Confidence 23334477899999887763 44 4799965422221 1122344566788888888886543
No 302
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.09 E-value=0.0006 Score=77.57 Aligned_cols=218 Identities=12% Similarity=0.212 Sum_probs=131.6
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeC---C---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---N---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
++.+.+ .|+|-.|| .++|+.+. . ..|+||+-+ |....+-
T Consensus 208 ~dd~~~-~ISWRGDG----------~yFAVss~~~~~~~~R~iRVy~Re-G~L~stS----------------------- 252 (928)
T PF04762_consen 208 WDDGRV-RISWRGDG----------EYFAVSSVEPETGSRRVIRVYSRE-GELQSTS----------------------- 252 (928)
T ss_pred cCCCce-EEEECCCC----------cEEEEEEEEcCCCceeEEEEECCC-ceEEecc-----------------------
Confidence 444566 89999999 79998875 3 478899876 3322221
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~ 248 (568)
........+++|. |.|++||+.-. ...|.+|.-+.-+ .+.....+......|..|.|++++ .
T Consensus 253 ----E~v~gLe~~l~Wr--PsG~lIA~~q~~~~~~~VvFfErNGLr---hgeF~l~~~~~~~~v~~l~Wn~ds------~ 317 (928)
T PF04762_consen 253 ----EPVDGLEGALSWR--PSGNLIASSQRLPDRHDVVFFERNGLR---HGEFTLRFDPEEEKVIELAWNSDS------E 317 (928)
T ss_pred ----ccCCCccCCccCC--CCCCEEEEEEEcCCCcEEEEEecCCcE---eeeEecCCCCCCceeeEEEECCCC------C
Confidence 0111112578999 88999998765 3456666643210 111112222456679999999999 8
Q ss_pred EEEEEcCCCEEEEECCCCCcce-eeeC-CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEcccccc--C--CC-------
Q 008363 249 VILTAGHGGLKFWDIRDPFRPL-WDIH-PAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAY--D--VP------- 314 (568)
Q Consensus 249 ~las~s~d~v~lwD~~~~~~~~-~~~~-~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~--~--~~------- 314 (568)
+||..-.|.|.+|-..+-..-+ ..+. .....+..+.|+|. ...|...+.+|.+..+++.-... + .|
T Consensus 318 iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~va 397 (928)
T PF04762_consen 318 ILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVA 397 (928)
T ss_pred EEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEE
Confidence 9999888889999887653222 1221 22333455999995 44566666667776655421110 0 00
Q ss_pred -CCCCCccCcc------ccce--EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 315 -ATGKPFAGTK------QQGL--HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 315 -~~g~~~~~~~------~~~l--~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..|..+.-+. ..|+ ..+. -..+|.+++|++++..+++...||.|.+|....
T Consensus 398 VIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 398 VIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecC
Confidence 0011110000 0111 1222 346899999999988899999999999999654
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.00066 Score=70.20 Aligned_cols=74 Identities=19% Similarity=0.450 Sum_probs=59.7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
.....| .|++++ |+.+.|+.|+.||+|.+||...+ +..+..+.-.++.++|+|+| .+|++|+.
T Consensus 257 pL~s~v-~~ca~s--p~E~kLvlGC~DgSiiLyD~~~~--------~t~~~ka~~~P~~iaWHp~g------ai~~V~s~ 319 (545)
T PF11768_consen 257 PLPSQV-ICCARS--PSEDKLVLGCEDGSIILYDTTRG--------VTLLAKAEFIPTLIAWHPDG------AIFVVGSE 319 (545)
T ss_pred ecCCcc-eEEecC--cccceEEEEecCCeEEEEEcCCC--------eeeeeeecccceEEEEcCCC------cEEEEEcC
Confidence 345566 899988 77889999999999999998754 22232334567899999999 89999999
Q ss_pred CC-EEEEECCCC
Q 008363 256 GG-LKFWDIRDP 266 (568)
Q Consensus 256 d~-v~lwD~~~~ 266 (568)
.| +.+||+.-.
T Consensus 320 qGelQ~FD~ALs 331 (545)
T PF11768_consen 320 QGELQCFDMALS 331 (545)
T ss_pred CceEEEEEeecC
Confidence 89 999999754
No 304
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.05 E-value=9.3e-05 Score=77.85 Aligned_cols=155 Identities=19% Similarity=0.265 Sum_probs=110.9
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC------CCCCCcEEEEEcCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES------DSDSANVILTAGHG 256 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~------~~~~~~~las~s~d 256 (568)
.+++|+ +.| +||-|+.. .|.+.|..+- +.++.+.-|...|+.|.|.|-.. -+...-+||++...
T Consensus 19 ~A~Dw~--~~G-LiAygshs-lV~VVDs~s~------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 19 NAADWS--PSG-LIAYGSHS-LVSVVDSRSL------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred cccccC--ccc-eEEEecCc-eEEEEehhhh------hhhhccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 678999 555 89988854 7888898765 78889999999999999998541 01122356666667
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcC---CC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP---DP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp---~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
| |.+||.... ..+..+..|..++..++|-| +. ..|++-..-.+|.+|+. .+|+.++ .+
T Consensus 89 GrIil~d~~~~-s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt--------dtG~k~W--------k~ 151 (1062)
T KOG1912|consen 89 GRIILVDFVLA-SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNT--------DTGEKFW--------KY 151 (1062)
T ss_pred CcEEEEEehhh-hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEc--------cCCceee--------cc
Confidence 8 999999977 66667778889999999976 34 45555577889999998 4576653 44
Q ss_pred ecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 332 NCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
........|+.+.|.. +.+...+..|.|.+-+.
T Consensus 152 ~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 152 DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred ccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 4444455667777764 55555555666665554
No 305
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.00022 Score=73.67 Aligned_cols=113 Identities=14% Similarity=0.189 Sum_probs=80.9
Q ss_pred eeEEEEccCCCCCCCCcEEEEE----cCCC-----EEEEECCCCC-cce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363 232 IRAVSWAPAESDSDSANVILTA----GHGG-----LKFWDIRDPF-RPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~----s~d~-----v~lwD~~~~~-~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~ 300 (568)
..++.|+-.. ++.+.|. +.++ -.+|++.... +.+ .+--..+..|.+++++|+...|+.|+.||+
T Consensus 208 Pl~~~Fs~~~-----~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgS 282 (545)
T PF11768_consen 208 PLDVEFSLNQ-----PYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGS 282 (545)
T ss_pred cEEEEccCCC-----CcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCe
Confidence 3567777543 3555543 2222 4567765442 222 111256788999999999999999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
|.+||... + +..+..+.-.++.++|+|+|.++++|+.-|.+.+||+.-.
T Consensus 283 iiLyD~~~--------~----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 283 IILYDTTR--------G----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEEcCC--------C----------eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999843 1 1234445566789999999999999999999999999644
No 306
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00015 Score=70.93 Aligned_cols=84 Identities=20% Similarity=0.272 Sum_probs=70.2
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+.+|...| ..++|+|...| ++..++.+.+|+|.|+++. ..+..+..| ..+++++|.-+. .++|..
T Consensus 188 ~lp~~g~~I-rdlafSp~~~G-Ll~~asl~nkiki~dlet~------~~vssy~a~-~~~wSC~wDlde-----~h~IYa 253 (463)
T KOG1645|consen 188 ILPGEGSFI-RDLAFSPFNEG-LLGLASLGNKIKIMDLETS------CVVSSYIAY-NQIWSCCWDLDE-----RHVIYA 253 (463)
T ss_pred cccccchhh-hhhccCccccc-eeeeeccCceEEEEecccc------eeeeheecc-CCceeeeeccCC-----cceeEE
Confidence 446788888 99999976554 8999999999999999977 777788787 789999999987 378888
Q ss_pred EcCCC-EEEEECCCCCcce
Q 008363 253 AGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~ 270 (568)
|-..| |.|||+|.+..++
T Consensus 254 Gl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred eccCceEEEEEccCCCchH
Confidence 88888 9999999876444
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.01 E-value=4.2e-05 Score=81.81 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=107.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH- 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~- 201 (568)
++|.+|...|+|.+-|..+.+.+.++ ..|++.| ..++ -.|+.|++++.
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~iht~--------------------------~aHs~si-SDfD----v~GNlLitCG~S 236 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFETIHTF--------------------------DAHSGSI-SDFD----VQGNLLITCGYS 236 (1118)
T ss_pred cEEEeecccceEEeecCCcCceeeee--------------------------eccccce-eeee----ccCCeEEEeecc
Confidence 68889999999999999998888777 7888888 6666 34789998876
Q ss_pred --------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE---CCCCCcc
Q 008363 202 --------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD---IRDPFRP 269 (568)
Q Consensus 202 --------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD---~~~~~~~ 269 (568)
|.-|+|||++.- +.+.-+.-+-++ .-+.|+|.-+ ..+|.++..| ..+-| +.++...
T Consensus 237 ~R~~~l~~D~FvkVYDLRmm------ral~PI~~~~~P-~flrf~Psl~-----t~~~V~S~sGq~q~vd~~~lsNP~~~ 304 (1118)
T KOG1275|consen 237 MRRYNLAMDPFVKVYDLRMM------RALSPIQFPYGP-QFLRFHPSLT-----TRLAVTSQSGQFQFVDTATLSNPPAG 304 (1118)
T ss_pred cccccccccchhhhhhhhhh------hccCCcccccCc-hhhhhccccc-----ceEEEEecccceeeccccccCCCccc
Confidence 456899999865 333333333343 5578888863 6788888877 99999 4444333
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
+..+......+..+++++.+..|+.|..+|.|.+|--
T Consensus 305 ~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 305 VKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 4445555667999999999999999999999999973
No 308
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=0.001 Score=71.28 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=126.5
Q ss_pred EEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEE
Q 008363 106 VKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTM 185 (568)
Q Consensus 106 v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v 185 (568)
-+|++.+ ..+|.|+.+|.|.+.+-.- +.++.+ ..+...+ ...
T Consensus 29 sc~~s~~----------~~vvigt~~G~V~~Ln~s~-~~~~~f--------------------------qa~~~si-v~~ 70 (933)
T KOG2114|consen 29 SCCSSST----------GSVVIGTADGRVVILNSSF-QLIRGF--------------------------QAYEQSI-VQF 70 (933)
T ss_pred eEEcCCC----------ceEEEeeccccEEEecccc-eeeehh--------------------------eecchhh-hhH
Confidence 4577777 7999999999888876433 222333 2333332 222
Q ss_pred EEccCCCCCEEEEEeCCC-----eEEEEEccCCCCCCCCcee---EEee----CCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 186 EWSTSPPHDYLLAGCHDG-----TVALWKFVASDSSIDSRPL---LCFS----ADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 186 ~~s~~~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~---~~~~----~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
-|.. ....+|++-+.|+ .|+||++..........++ +.+. ....++.+++.+.+- ..+|.|
T Consensus 71 L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l------~~Iv~G 143 (933)
T KOG2114|consen 71 LYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL------KTIVCG 143 (933)
T ss_pred hhcc-cCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccc------cEEEEE
Confidence 2331 2335777766665 4999999755332223344 2221 135678899999987 899999
Q ss_pred cCCC-EEEEEC--C-CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 254 GHGG-LKFWDI--R-DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 254 s~d~-v~lwD~--~-~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
-.+| |.++.- . ...........-..+|+.+++..++..++....-..|.+|.+. |+. ..+.
T Consensus 144 f~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~---------gr~------p~~~ 208 (933)
T KOG2114|consen 144 FTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLS---------GRT------PSLK 208 (933)
T ss_pred ecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEec---------CCC------ccee
Confidence 8899 877732 1 1112222233446789999999999885544555679999984 222 1134
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.+..|...+.|..|++....++.++ +..|.+|+....
T Consensus 209 ~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 209 VLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred eeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 5777888999999988765344444 457889988643
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.1e-05 Score=75.05 Aligned_cols=230 Identities=17% Similarity=0.214 Sum_probs=151.5
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
+..+.+|.+ ++.+++.+-++ -++.+.+. |..++++|+.+...+..+ ++
T Consensus 46 VKhFraHL~-~I~sl~~S~dg----------~L~~Sv~d~Dhs~KvfDvEn~Dminmi--------------KL------ 94 (558)
T KOG0882|consen 46 VKHFRAHLG-VILSLAVSYDG----------WLFRSVEDPDHSVKVFDVENFDMINMI--------------KL------ 94 (558)
T ss_pred hhhhHHHHH-HHHhhhccccc----------eeEeeccCcccceeEEEeeccchhhhc--------------cc------
Confidence 445677888 66688888888 68888777 999999999885544322 11
Q ss_pred cccccCCcCccceEEEEccCCCCC---EE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHD---YL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~---~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~ 246 (568)
..+|-.+.|... .|. .| ++.-.+|.|.++|-..... +....-.-|..+|..+.+++.+
T Consensus 95 --------~~lPg~a~wv~s-kGd~~s~IAVs~~~sg~i~VvD~~~d~~----q~~~fkklH~sPV~~i~y~qa~----- 156 (558)
T KOG0882|consen 95 --------VDLPGFAEWVTS-KGDKISLIAVSLFKSGKIFVVDGFGDFC----QDGYFKKLHFSPVKKIRYNQAG----- 156 (558)
T ss_pred --------ccCCCceEEecC-CCCeeeeEEeecccCCCcEEECCcCCcC----ccceecccccCceEEEEeeccc-----
Confidence 011344555433 231 33 3445689999999765411 3333445699999999999998
Q ss_pred CcEEEEEcCCC-EEEEECCCCCc-----ce---------eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFR-----PL---------WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~-----~~---------~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
..++|....| |..|......+ .. ..+.-......++.|+|++..+.+-+.|..|++++++
T Consensus 157 -Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~K---- 231 (558)
T KOG0882|consen 157 -DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFK---- 231 (558)
T ss_pred -cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEec----
Confidence 7888888888 99998874211 11 1112234556899999999999999999999999984
Q ss_pred CCCCCCCCccCcc------------ccceE------------EEecCCC-CEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 312 DVPATGKPFAGTK------------QQGLH------------LVNCSSF-AIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 312 ~~~~~g~~~~~~~------------~~~l~------------~~~~h~~-~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|+.+.... ...+. .+..|.. .-+.+.|...+++|+.++-=| |++.++.+
T Consensus 232 ----tGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t 306 (558)
T KOG0882|consen 232 ----TGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT 306 (558)
T ss_pred ----cchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence 344332000 00000 1112322 235678988899999998664 89999998
Q ss_pred CeeeccCCCCCcce
Q 008363 367 KAVEKDHSRNRPMH 380 (568)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (568)
..+.+...+.....
T Consensus 307 n~v~ri~gk~e~ir 320 (558)
T KOG0882|consen 307 NTVVRILGKDEAIR 320 (558)
T ss_pred CeEEEEeccchhhh
Confidence 88777655444333
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.94 E-value=0.0058 Score=59.43 Aligned_cols=206 Identities=14% Similarity=0.111 Sum_probs=134.5
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCc-EEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+.++.+|..+ ..++.+-.-|+ ..+||..+++....+.... -.++.||
T Consensus 8 H~~a~~p~~~---------~avafaRRPG~~~~v~D~~~g~~~~~~~a~~------------------gRHFyGH----- 55 (305)
T PF07433_consen 8 HGVAAHPTRP---------EAVAFARRPGTFALVFDCRTGQLLQRLWAPP------------------GRHFYGH----- 55 (305)
T ss_pred cceeeCCCCC---------eEEEEEeCCCcEEEEEEcCCCceeeEEcCCC------------------CCEEecC-----
Confidence 4677788554 67888887776 5689999988877653321 1122444
Q ss_pred eEEEEccCCCCCEEEEEe-----CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 183 LTMEWSTSPPHDYLLAGC-----HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
-.|+ ++|++|++.= ..|.|-|||.... ...+..|..|.-.-..|.+.|++ ..|+.+..
T Consensus 56 --g~fs--~dG~~LytTEnd~~~g~G~IgVyd~~~~-----~~ri~E~~s~GIGPHel~l~pDG------~tLvVANGGI 120 (305)
T PF07433_consen 56 --GVFS--PDGRLLYTTENDYETGRGVIGVYDAARG-----YRRIGEFPSHGIGPHELLLMPDG------ETLVVANGGI 120 (305)
T ss_pred --EEEc--CCCCEEEEeccccCCCcEEEEEEECcCC-----cEEEeEecCCCcChhhEEEcCCC------CEEEEEcCCC
Confidence 3456 8999988853 3589999999833 36777888888888899999998 56665532
Q ss_pred ----------------CC-EEEEECCCCCcce--eee--CCCCCCeEEEEEcCCCCEEEEEeCCCc-------EEEEEcc
Q 008363 256 ----------------GG-LKFWDIRDPFRPL--WDI--HPAPKFIYGLDWLPDPGCVILSFDDGA-------MRIVSLL 307 (568)
Q Consensus 256 ----------------d~-v~lwD~~~~~~~~--~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~-------I~lwd~~ 307 (568)
+- +.+.|..++ ..+ ..+ .-|.-.|..|++.++|..++..-..|. |.+++.
T Consensus 121 ~Thpd~GR~kLNl~tM~psL~~ld~~sG-~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~- 198 (305)
T PF07433_consen 121 ETHPDSGRAKLNLDTMQPSLVYLDARSG-ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR- 198 (305)
T ss_pred ccCcccCceecChhhcCCceEEEecCCC-ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-
Confidence 11 334455555 322 234 346778899999999886666544332 344433
Q ss_pred ccccCCCCCCCCccCccccceE----EEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCCeeecc
Q 008363 308 KAAYDVPATGKPFAGTKQQGLH----LVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~----~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
|..+ +.+. ....-.+-|-+|++++++.++ +|+-.-+.+.+||..++.+...
T Consensus 199 ---------g~~~-----~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 199 ---------GGAL-----RLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred ---------CCcc-----eeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 2211 0000 112234567899999998766 5555778899999999887654
No 311
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.93 E-value=0.0049 Score=58.91 Aligned_cols=183 Identities=21% Similarity=0.194 Sum_probs=108.1
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
+.+++++.++.|..||..+|+.+-.+... ..+..... ..+..+++++.|
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~---------------------------~~~~~~~~----~~~~~v~v~~~~ 85 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLP---------------------------GPISGAPV----VDGGRVYVGTSD 85 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECS---------------------------SCGGSGEE----EETTEEEEEETT
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeecc---------------------------ccccceee----ecccccccccce
Confidence 57777889999999999998877554211 11001111 234577888889
Q ss_pred CeEEEEEccCCCCCCCCceeEEe-eCCC---CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCF-SADT---LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP 277 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~-~~h~---~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~ 277 (568)
+.|..+|..++ +.+..+ .... ...........+ ..++.+..++ |..+|+.++ ..++......
T Consensus 86 ~~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~l~~~d~~tG-~~~w~~~~~~ 152 (238)
T PF13360_consen 86 GSLYALDAKTG------KVLWSIYLTSSPPAGVRSSSSPAVDG------DRLYVGTSSGKLVALDPKTG-KLLWKYPVGE 152 (238)
T ss_dssp SEEEEEETTTS------CEEEEEEE-SSCTCSTB--SEEEEET------TEEEEEETCSEEEEEETTTT-EEEEEEESST
T ss_pred eeeEecccCCc------ceeeeeccccccccccccccCceEec------CEEEEEeccCcEEEEecCCC-cEEEEeecCC
Confidence 99999998877 555552 2221 111222222224 5666666566 999999988 6665554332
Q ss_pred CC----------eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363 278 KF----------IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 278 ~~----------i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
.. +..-....++ .++.++.++.+..+|+. +|+.+ +......+.. .....+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~--------tg~~~----------w~~~~~~~~~-~~~~~~ 212 (238)
T PF13360_consen 153 PRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLA--------TGEKL----------WSKPISGIYS-LPSVDG 212 (238)
T ss_dssp T-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETT--------TTEEE----------EEECSS-ECE-CEECCC
T ss_pred CCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECC--------CCCEE----------EEecCCCccC-CceeeC
Confidence 11 1222222244 77777777754344884 34321 1211222222 144567
Q ss_pred CEEEEEeCCCeEEEEEcCCCee
Q 008363 348 GMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..|+.++.++.|..||+.+++.
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEE
T ss_pred CEEEEEeCCCEEEEEECCCCCE
Confidence 8888888999999999998865
No 312
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.90 E-value=0.017 Score=58.11 Aligned_cols=207 Identities=9% Similarity=-0.002 Sum_probs=121.8
Q ss_pred CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC----------
Q 008363 132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH---------- 201 (568)
Q Consensus 132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~---------- 201 (568)
++|.+.|..+++.+.++.. |.. |..+ .+ |+|+.|+++..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-------------------------G~~---P~~~-~s--pDg~~lyva~~~~~R~~~G~~ 75 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-------------------------GFL---PNPV-VA--SDGSFFAHASTVYSRIARGKR 75 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-------------------------cCC---Ccee-EC--CCCCEEEEEeccccccccCCC
Confidence 8999999999888776521 111 1223 55 88888777665
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCccee
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLW 271 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~ 271 (568)
+..|.+||+.+. +.+..+.-- ......++++|+| ++|+.... +. |.+.|+.+. +.+.
T Consensus 76 ~d~V~v~D~~t~------~~~~~i~~p~~p~~~~~~~~~~~~ls~dg------k~l~V~n~~p~~~V~VvD~~~~-kvv~ 142 (352)
T TIGR02658 76 TDYVEVIDPQTH------LPIADIELPEGPRFLVGTYPWMTSLTPDN------KTLLFYQFSPSPAVGVVDLEGK-AFVR 142 (352)
T ss_pred CCEEEEEECccC------cEEeEEccCCCchhhccCccceEEECCCC------CEEEEecCCCCCEEEEEECCCC-cEEE
Confidence 789999999977 666555321 1223478899999 77776653 45 999999876 3222
Q ss_pred eeCCC------------------CC-------------CeEEE--------------EEcC-CCCEEEEEeCCCcEEEEE
Q 008363 272 DIHPA------------------PK-------------FIYGL--------------DWLP-DPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 272 ~~~~h------------------~~-------------~i~~l--------------~~sp-~~~~l~s~~~dg~I~lwd 305 (568)
.+..- .+ .+... .|.+ +|++++.+.. |+|++.|
T Consensus 143 ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id 221 (352)
T TIGR02658 143 MMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQID 221 (352)
T ss_pred EEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEe
Confidence 22100 00 00010 1223 6666666555 7787777
Q ss_pred ccccccCCCCCCCCccCccccceEEEe-------cCCCCEEEEEEecCCCEEEEEe----------CCCeEEEEEcCCCe
Q 008363 306 LLKAAYDVPATGKPFAGTKQQGLHLVN-------CSSFAIWSVQVSRLTGMVAYCS----------ADGTVHRFQLTAKA 368 (568)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-------~h~~~V~~l~~sp~~~~l~s~s----------~Dg~v~iwd~~~~~ 368 (568)
+....- ... ..+..+. ...+.+.-++++++++.|+... ..+.|.++|..+.+
T Consensus 222 ~~~~~~---~~~--------~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k 290 (352)
T TIGR02658 222 LSSGDA---KFL--------PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK 290 (352)
T ss_pred cCCCcc---eec--------ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe
Confidence 532110 001 1111111 1223334589999998777743 22579999999988
Q ss_pred eeccCCCCCcceeeeecccCCCC-ceEEc
Q 008363 369 VEKDHSRNRPMHFLCGSVTEDES-AITVN 396 (568)
Q Consensus 369 ~~~~~~~~~~~~~~~~s~~~~~~-~i~~~ 396 (568)
......-...++-+ .+++|+. .+.+.
T Consensus 291 vi~~i~vG~~~~~i--avS~Dgkp~lyvt 317 (352)
T TIGR02658 291 RLRKIELGHEIDSI--NVSQDAKPLLYAL 317 (352)
T ss_pred EEEEEeCCCceeeE--EECCCCCeEEEEe
Confidence 77654433334333 5788888 55543
No 313
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.89 E-value=0.013 Score=56.59 Aligned_cols=139 Identities=11% Similarity=0.104 Sum_probs=87.9
Q ss_pred ceEEEEccCCCCCEEEEEeCC--------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-E
Q 008363 182 PLTMEWSTSPPHDYLLAGCHD--------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-T 252 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s 252 (568)
+..+++. ++|++.++.... |.|..++.. + +..... ..-...+.|+|+|++ +.|+ +
T Consensus 88 ~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~------~~~~~~-~~~~~pNGi~~s~dg------~~lyv~ 151 (246)
T PF08450_consen 88 PNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD-G------KVTVVA-DGLGFPNGIAFSPDG------KTLYVA 151 (246)
T ss_dssp EEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-S------EEEEEE-EEESSEEEEEEETTS------SEEEEE
T ss_pred CceEEEc--CCCCEEEEecCCCccccccccceEEECCC-C------eEEEEe-cCcccccceEECCcc------hheeec
Confidence 4778877 889877776644 456666655 3 222222 234557899999998 5554 5
Q ss_pred EcCCC-EEEEECCCCCc------ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 253 AGHGG-LKFWDIRDPFR------PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~------~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
-+..+ |..+|+..... .+..+....+..-.+++..+|+..++....+.|.++|. .|+.+
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p---------~G~~~----- 217 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP---------DGKLL----- 217 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET---------TSCEE-----
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC---------CccEE-----
Confidence 55566 99999864422 12223322334788999999998888788999999998 36543
Q ss_pred cceEEEecCCCCEEEEEEe-cCCCEEEEE
Q 008363 326 QGLHLVNCSSFAIWSVQVS-RLTGMVAYC 353 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~s-p~~~~l~s~ 353 (568)
..+......+++++|. ++...|+..
T Consensus 218 ---~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 218 ---REIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp ---EEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred ---EEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 4555444588999995 555544443
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0015 Score=69.56 Aligned_cols=142 Identities=18% Similarity=0.283 Sum_probs=95.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC---CCCCEEEEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS---PPHDYLLAG 199 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~---~~g~~l~sg 199 (568)
.++++|+.||+|.|-.+.+.+....+ ....++ .+|+++|. ...+++++|
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~~~~~---------------------------df~rpi-ksial~Pd~~~~~sk~fv~G 135 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDEITQY---------------------------DFKRPI-KSIALHPDFSRQQSKQFVSG 135 (846)
T ss_pred ceEEEecCCCcEEEeeccCCccceeE---------------------------ecCCcc-eeEEeccchhhhhhhheeec
Confidence 79999999999999998886655432 223444 78887743 225689999
Q ss_pred eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeC-CCC-
Q 008363 200 CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIH-PAP- 277 (568)
Q Consensus 200 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~-~h~- 277 (568)
+.-| +.++.-+ +......+ .+..-.++|.++.|.. ++||-++++||++||+... +.+..+. .+.
T Consensus 136 G~ag-lvL~er~---wlgnk~~v-~l~~~eG~I~~i~W~g--------~lIAWand~Gv~vyd~~~~-~~l~~i~~p~~~ 201 (846)
T KOG2066|consen 136 GMAG-LVLSERN---WLGNKDSV-VLSEGEGPIHSIKWRG--------NLIAWANDDGVKVYDTPTR-QRLTNIPPPSQS 201 (846)
T ss_pred Ccce-EEEehhh---hhcCccce-eeecCccceEEEEecC--------cEEEEecCCCcEEEecccc-ceeeccCCCCCC
Confidence 9988 7776532 11111222 3455678999999974 5999999999999999876 4443332 221
Q ss_pred ----CCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 278 ----KFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 278 ----~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
..-..+.|.++.+ |+.| ...+|+|..++.
T Consensus 202 ~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 1124688887654 5555 444789998873
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.85 E-value=0.0019 Score=71.77 Aligned_cols=205 Identities=12% Similarity=0.133 Sum_probs=127.2
Q ss_pred ceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 101 KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 101 ~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
.++ ++.|.-+. ..|+.+..+|.|.+-|..+...... ..-...
T Consensus 70 ~i~-s~~fl~d~----------~~i~v~~~~G~iilvd~et~~~eiv---------------------------g~vd~G 111 (1265)
T KOG1920|consen 70 EIV-SVQFLADT----------NSICVITALGDIILVDPETLELEIV---------------------------GNVDNG 111 (1265)
T ss_pred ceE-EEEEeccc----------ceEEEEecCCcEEEEcccccceeee---------------------------eeccCc
Confidence 355 89999888 7888889999999998877332211 122345
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEc----cCCCCC-------------CCCceeEEeeCCC--------------
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKF----VASDSS-------------IDSRPLLCFSADT-------------- 229 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~----~~~~~~-------------~~~~~~~~~~~h~-------------- 229 (568)
| .+++|+ ||++.++..+.++++.+-+- -..... .-++....|.|..
T Consensus 112 I-~aaswS--~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~ 188 (1265)
T KOG1920|consen 112 I-SAASWS--PDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA 188 (1265)
T ss_pred e-EEEeec--CCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence 6 889999 88999999998888876543 111100 0001111222111
Q ss_pred -------CCeeEEEEccCCCCCCCCcEEEEEc----CC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-
Q 008363 230 -------LPIRAVSWAPAESDSDSANVILTAG----HG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS- 295 (568)
Q Consensus 230 -------~~V~~v~~~p~~~~~~~~~~las~s----~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~- 295 (568)
+.=.+|.|--+| .+||+.. .| . |++||........ -....+--.+++|-|.|..+++-
T Consensus 189 ~~~~~~~~~~~~IsWRgDg------~~fAVs~~~~~~~~RkirV~drEg~Lns~--se~~~~l~~~LsWkPsgs~iA~iq 260 (1265)
T KOG1920|consen 189 LEQIEQDDHKTSISWRGDG------EYFAVSFVESETGTRKIRVYDREGALNST--SEPVEGLQHSLSWKPSGSLIAAIQ 260 (1265)
T ss_pred ccchhhccCCceEEEccCC------cEEEEEEEeccCCceeEEEecccchhhcc--cCcccccccceeecCCCCeEeeee
Confidence 112358999998 8988842 24 4 9999987221111 11112223689999999998886
Q ss_pred --eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE---EeCCCeEEEEEcCCC
Q 008363 296 --FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY---CSADGTVHRFQLTAK 367 (568)
Q Consensus 296 --~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s---~s~Dg~v~iwd~~~~ 367 (568)
+.|+.|.+|...-.. .|+.. ..+......|..++|+.++..|++ +.....|++|-+.+-
T Consensus 261 ~~~sd~~IvffErNGL~-----hg~f~--------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 261 CKTSDSDIVFFERNGLR-----HGEFV--------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred ecCCCCcEEEEecCCcc-----ccccc--------cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 347789999863221 12111 112223344899999999998888 455556999988654
No 316
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.0019 Score=65.89 Aligned_cols=178 Identities=11% Similarity=0.219 Sum_probs=112.9
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
-+.|||.| .+|++--.-| |.+|--.+...++.+ .|.+ | .-
T Consensus 215 yv~wSP~G----------TYL~t~Hk~G-I~lWGG~~f~r~~RF---------------------------~Hp~-V-q~ 254 (698)
T KOG2314|consen 215 YVRWSPKG----------TYLVTFHKQG-IALWGGESFDRIQRF---------------------------YHPG-V-QF 254 (698)
T ss_pred eEEecCCc----------eEEEEEeccc-eeeecCccHHHHHhc---------------------------cCCC-c-ee
Confidence 58999999 7999887766 889987775555443 2333 2 56
Q ss_pred EEEccCCCCCEEEEEeC-----------CCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEEccCCCCCCCCcEE
Q 008363 185 MEWSTSPPHDYLLAGCH-----------DGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~-----------Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
++|| |...+|++=+. -..++|||+.++ ...+.|.. ....-.-+.|+.++ +++
T Consensus 255 idfS--P~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG------~lkrsF~~~~~~~~~WP~frWS~Dd------Ky~ 320 (698)
T KOG2314|consen 255 IDFS--PNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG------LLKRSFPVIKSPYLKWPIFRWSHDD------KYF 320 (698)
T ss_pred eecC--CccceEEEecCCccccCcccCCCceEEEEEcccc------chhcceeccCCCccccceEEeccCC------cee
Confidence 7888 66778887543 257999999988 44444433 12222346899998 899
Q ss_pred EEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-----CCcEEEEEccccccCCCCCCCCccCccc
Q 008363 251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-----DGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-----dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
|--..++|.||+..+- ..+..-.-....|....|+|.+..|+.=.. -..+.|..+.+ +
T Consensus 321 Arm~~~sisIyEtpsf-~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs--------~-------- 383 (698)
T KOG2314|consen 321 ARMTGNSISIYETPSF-MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS--------K-------- 383 (698)
T ss_pred EEeccceEEEEecCce-eeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc--------c--------
Confidence 9888888999997753 333111122456888999999887765322 12344444421 2
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEE
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYC 353 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~ 353 (568)
+.+++-.-|.-.=..|.|-.+|.+|+.-
T Consensus 384 ~~iRt~nlfnVsDckLhWQk~gdyLcvk 411 (698)
T KOG2314|consen 384 REIRTKNLFNVSDCKLHWQKSGDYLCVK 411 (698)
T ss_pred ceeeeccceeeeccEEEeccCCcEEEEE
Confidence 1223333333333456777778877653
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.73 E-value=0.0056 Score=63.23 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=82.7
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW 271 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~ 271 (568)
+..+++++.+|.+..||..++ +.+..... . ....... .+ ..++.++.++ |..+|..++ ..++
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG------~~~W~~~~-~-~~~~p~~--~~------~~vyv~~~~G~l~~~d~~tG-~~~W 303 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSG------RVLWKRDA-S-SYQGPAV--DD------NRLYVTDADGVVVALDRRSG-SELW 303 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCC------cEEEeecc-C-CccCceE--eC------CEEEEECCCCeEEEEECCCC-cEEE
Confidence 458888888999999999876 44433321 1 1122222 23 4666667777 999999877 5555
Q ss_pred eeCCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCE
Q 008363 272 DIHPAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGM 349 (568)
Q Consensus 272 ~~~~h~~-~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~ 349 (568)
....... ...+... .+..|++++.+|.|+++|.. +|+.+ ..+..+...+.. ..+. +..
T Consensus 304 ~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~--------tG~~~--------~~~~~~~~~~~~sp~~~--~~~ 363 (377)
T TIGR03300 304 KNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE--------DGSFV--------ARLKTDGSGIASPPVVV--GDG 363 (377)
T ss_pred ccccccCCccccCEE--ECCEEEEEeCCCEEEEEECC--------CCCEE--------EEEEcCCCccccCCEEE--CCE
Confidence 4422111 1222222 36789999999999999984 46554 355545433322 2232 345
Q ss_pred EEEEeCCCeEEEE
Q 008363 350 VAYCSADGTVHRF 362 (568)
Q Consensus 350 l~s~s~Dg~v~iw 362 (568)
|+.++.||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8899999999876
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.71 E-value=1.1e-05 Score=82.92 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=112.5
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
+..+ .|++|+-..+..++++|..+|.|.+-.++.... .-.....+|..++++++|++-.. ++||.|-.
T Consensus 56 tqy~-kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd----Ss~E~tp~~ar~Ct~lAwneLDt-----n~LAagldkh 125 (783)
T KOG1008|consen 56 TQYV-KCVASFYGNDRCILAVGSATGNISLLSVRHPHD----SSAEVTPGYARPCTSLAWNELDT-----NHLAAGLDKH 125 (783)
T ss_pred CCCc-eeehhhcCCchhhhhhccccCceEEeecCCccc----ccceecccccccccccccccccH-----HHHHhhhhhh
Confidence 3445 788887555555889999999999999886532 22334567888999999999863 68887743
Q ss_pred --CC-EEEEECCCCC-cce--eeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 --GG-LKFWDIRDPF-RPL--WDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 --d~-v~lwD~~~~~-~~~--~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
|. +.|||+.+.. .|. ..+.+ ......+++|..+.+.+++|.....|.++|+|..- .
T Consensus 126 rnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-----------------~ 188 (783)
T KOG1008|consen 126 RNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-----------------D 188 (783)
T ss_pred cccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-----------------h
Confidence 45 9999998763 111 12222 33456799999999999999999999999997311 1
Q ss_pred EEEecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEE
Q 008363 329 HLVNCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd 363 (568)
......+..|..+.+.| .+.|+++-. ||.|.+||
T Consensus 189 ~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 189 SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred hhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 11122334566778888 467887776 99999999
No 319
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00075 Score=71.89 Aligned_cols=68 Identities=19% Similarity=0.431 Sum_probs=58.4
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
++++|+ |..-.|+.|-.-|.+.+|...+. +.-.....|..+|..+.|+++| ..++|+..-| |.+|
T Consensus 63 tSLCWH--pe~~vLa~gwe~g~~~v~~~~~~------e~htv~~th~a~i~~l~wS~~G------~~l~t~d~~g~v~lw 128 (1416)
T KOG3617|consen 63 TSLCWH--PEEFVLAQGWEMGVSDVQKTNTT------ETHTVVETHPAPIQGLDWSHDG------TVLMTLDNPGSVHLW 128 (1416)
T ss_pred hhhccC--hHHHHHhhccccceeEEEecCCc------eeeeeccCCCCCceeEEecCCC------CeEEEcCCCceeEEE
Confidence 789999 66678899999999999998765 4445556799999999999999 8999999988 9999
Q ss_pred ECC
Q 008363 262 DIR 264 (568)
Q Consensus 262 D~~ 264 (568)
...
T Consensus 129 r~d 131 (1416)
T KOG3617|consen 129 RYD 131 (1416)
T ss_pred Eee
Confidence 765
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.0023 Score=68.33 Aligned_cols=68 Identities=22% Similarity=0.334 Sum_probs=58.9
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
+++|+|.. -+|+.|-.-|.+.+|...+.+..... ..|...| ..
T Consensus 64 SLCWHpe~----------~vLa~gwe~g~~~v~~~~~~e~htv~--------------------------~th~a~i-~~ 106 (1416)
T KOG3617|consen 64 SLCWHPEE----------FVLAQGWEMGVSDVQKTNTTETHTVV--------------------------ETHPAPI-QG 106 (1416)
T ss_pred hhccChHH----------HHHhhccccceeEEEecCCceeeeec--------------------------cCCCCCc-ee
Confidence 79999998 78999999999999998874433222 6789999 99
Q ss_pred EEEccCCCCCEEEEEeCCCeEEEEEcc
Q 008363 185 MEWSTSPPHDYLLAGCHDGTVALWKFV 211 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~Dg~I~iwd~~ 211 (568)
++|+ ++|..++++..-|.|.+|...
T Consensus 107 l~wS--~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 107 LDWS--HDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEec--CCCCeEEEcCCCceeEEEEee
Confidence 9999 899999999999999999876
No 321
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.66 E-value=0.021 Score=60.77 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred EEEEECCC----CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 258 LKFWDIRD----PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 258 v~lwD~~~----~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
|.+.|.++ ....+..+ .-......+.++|||+++++++. +.+|.|+|+.+...-. .++. ......+....
T Consensus 298 V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~--~~~~~vvaeve 372 (635)
T PRK02888 298 VPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKI--KPRDAVVAEPE 372 (635)
T ss_pred EEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccC--CccceEEEeec
Confidence 77778776 22333333 22444578999999999998866 9999999997644100 0110 00001112233
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
.-.++ ...+|.++|....|.-.|..|..|++..
T Consensus 373 vGlGP-LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 LGLGP-LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCCc-ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 22333 4578999999889999999999999976
No 322
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.57 E-value=0.01 Score=56.72 Aligned_cols=179 Identities=17% Similarity=0.155 Sum_probs=103.3
Q ss_pred CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEE
Q 008363 130 GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWK 209 (568)
Q Consensus 130 ~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd 209 (568)
.+|+|..||..+++.+-..... ...... .+... +++..+++++.++.|..||
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~-----------------------~~~~~~--~~~~~---~~~~~v~~~~~~~~l~~~d 52 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLG-----------------------PGIGGP--VATAV---PDGGRVYVASGDGNLYALD 52 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECS-----------------------SSCSSE--EETEE---EETTEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEECC-----------------------CCCCCc--cceEE---EeCCEEEEEcCCCEEEEEE
Confidence 3688999999998877554110 011111 11121 2456888889999999999
Q ss_pred ccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-CCC--C-CCeEEEE
Q 008363 210 FVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-HPA--P-KFIYGLD 284 (568)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-~~h--~-~~i~~l~ 284 (568)
..++ +.+..+.. ...+........+ .++.+..++ |+.+|..++ ..++.. ... . .....+.
T Consensus 53 ~~tG------~~~W~~~~-~~~~~~~~~~~~~-------~v~v~~~~~~l~~~d~~tG-~~~W~~~~~~~~~~~~~~~~~ 117 (238)
T PF13360_consen 53 AKTG------KVLWRFDL-PGPISGAPVVDGG-------RVYVGTSDGSLYALDAKTG-KVLWSIYLTSSPPAGVRSSSS 117 (238)
T ss_dssp TTTS------EEEEEEEC-SSCGGSGEEEETT-------EEEEEETTSEEEEEETTTS-CEEEEEEE-SSCTCSTB--SE
T ss_pred CCCC------CEEEEeec-cccccceeeeccc-------ccccccceeeeEecccCCc-ceeeeeccccccccccccccC
Confidence 9877 66665544 2322222223333 455555666 999999988 666553 211 1 1122233
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC----------EEEEEEecCCCEEEEEe
Q 008363 285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA----------IWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~----------V~~l~~sp~~~~l~s~s 354 (568)
...++..++++..++.|+.+|++ +|+.++ .+...... +..-....++ .++.++
T Consensus 118 ~~~~~~~~~~~~~~g~l~~~d~~--------tG~~~w--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 180 (238)
T PF13360_consen 118 PAVDGDRLYVGTSSGKLVALDPK--------TGKLLW--------KYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSS 180 (238)
T ss_dssp EEEETTEEEEEETCSEEEEEETT--------TTEEEE--------EEESSTT-SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred ceEecCEEEEEeccCcEEEEecC--------CCcEEE--------EeecCCCCCCcceeeecccccceEEECC-EEEEEc
Confidence 33348888999889999999984 475542 33332211 1222222234 777777
Q ss_pred CCCeEEEEEcCCCe
Q 008363 355 ADGTVHRFQLTAKA 368 (568)
Q Consensus 355 ~Dg~v~iwd~~~~~ 368 (568)
.++.+..+|+.+++
T Consensus 181 ~~g~~~~~d~~tg~ 194 (238)
T PF13360_consen 181 GDGRVVAVDLATGE 194 (238)
T ss_dssp CTSSEEEEETTTTE
T ss_pred CCCeEEEEECCCCC
Confidence 78864444998887
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.56 E-value=0.0072 Score=67.41 Aligned_cols=151 Identities=11% Similarity=0.184 Sum_probs=90.9
Q ss_pred eEEEEccCCCCCEEEEEe----CC-CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 183 LTMEWSTSPPHDYLLAGC----HD-GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs----~D-g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
++|.|- -||+++|+.. .+ ..|++||-. +.++....+ -.+.=.+++|-|.| .++|+...
T Consensus 199 ~~IsWR--gDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~------~~~l~~~LsWkPsg------s~iA~iq~~~ 263 (1265)
T KOG1920|consen 199 TSISWR--GDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEP------VEGLQHSLSWKPSG------SLIAAIQCKT 263 (1265)
T ss_pred ceEEEc--cCCcEEEEEEEeccCCceeEEEeccc-chhhcccCc------ccccccceeecCCC------CeEeeeeecC
Confidence 578999 8999998832 23 799999977 322111122 22334678999998 78888643
Q ss_pred -CC-EEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEE---EeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 -GG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVIL---SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 -d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s---~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+. |.++.-..-...-..+ ......|..++|+.++..|++ ......|++|-+.+.. .+ ++
T Consensus 264 sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh--------WY----LK-- 329 (1265)
T KOG1920|consen 264 SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH--------WY----LK-- 329 (1265)
T ss_pred CCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE--------EE----EE--
Confidence 34 9998765432221121 122333899999999998888 3445559999884421 00 01
Q ss_pred EEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEc
Q 008363 329 HLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~ 364 (568)
..+.-..... +.|+|.. ..|..-..+|...++++
T Consensus 330 q~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 330 QELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred EEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 1122122222 7788864 34444446777777666
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.56 E-value=0.022 Score=55.51 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=106.6
Q ss_pred EEEccCCCCcccccCcccEEEEEe-----CCCcEEEEECC-CCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 106 VKWKPYNAVDCKCKQRLGYLAVLL-----GNGSLEVWEVP-LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 106 v~~sp~~~~~~~~~~~~~~las~s-----~dg~V~iwd~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
-.|+|+| .+|++.- ..|.|-|||.. +.+.+..+ ..|--
T Consensus 56 g~fs~dG----------~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~--------------------------~s~GI 99 (305)
T PF07433_consen 56 GVFSPDG----------RLLYTTENDYETGRGVIGVYDAARGYRRIGEF--------------------------PSHGI 99 (305)
T ss_pred EEEcCCC----------CEEEEeccccCCCcEEEEEEECcCCcEEEeEe--------------------------cCCCc
Confidence 4699999 6777753 45899999999 44555444 22221
Q ss_pred ccceEEEEccCCCCCEEEEEeC------------------CCeEEEEEccCCCCCCCCceeEE--e--eCCCCCeeEEEE
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCH------------------DGTVALWKFVASDSSIDSRPLLC--F--SADTLPIRAVSW 237 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~------------------Dg~I~iwd~~~~~~~~~~~~~~~--~--~~h~~~V~~v~~ 237 (568)
. |-.+.|. |+|..|+++-- +-.+...|..++ ..+.. + .-|.-.|+-+++
T Consensus 100 G-PHel~l~--pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG------~ll~q~~Lp~~~~~lSiRHLa~ 170 (305)
T PF07433_consen 100 G-PHELLLM--PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG------ALLEQVELPPDLHQLSIRHLAV 170 (305)
T ss_pred C-hhhEEEc--CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC------ceeeeeecCccccccceeeEEe
Confidence 2 3566777 77867766531 223444444444 33433 4 337778999999
Q ss_pred ccCCCCCCCCcEEEEEcC-----CC---EEEEECCCCCccee----eeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEE
Q 008363 238 APAESDSDSANVILTAGH-----GG---LKFWDIRDPFRPLW----DIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIV 304 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~-----d~---v~lwD~~~~~~~~~----~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lw 304 (568)
.++| ..++..-. +. |-+++.......+. ....-.+.|-+|++++++.++++++- .+.+.+|
T Consensus 171 ~~~G------~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~ 244 (305)
T PF07433_consen 171 DGDG------TVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVW 244 (305)
T ss_pred cCCC------cEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEE
Confidence 9998 44444322 11 44554443211110 11233578899999999998877654 7889999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
|.. +|+++. .. .-..+..++..+++ ++++.+ .|.
T Consensus 245 d~~--------tg~~~~--------~~--~l~D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 245 DAA--------TGRLLG--------SV--PLPDACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred ECC--------CCCEee--------cc--ccCceeeeeecCCc-eEEeCC-Ccc
Confidence 984 465431 11 12345667766666 555554 344
No 325
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.54 E-value=0.017 Score=59.67 Aligned_cols=187 Identities=16% Similarity=0.182 Sum_probs=106.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..+++++.+|.|..+|..+|+.+-..... + .+..... .++..+++++.+
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~------------------------~---~~~~~p~----v~~~~v~v~~~~ 114 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLD------------------------E---RLSGGVG----ADGGLVFVGTEK 114 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCC------------------------C---CcccceE----EcCCEEEEEcCC
Confidence 57888889999999999998766432111 0 0101122 245688889999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCe-
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFI- 280 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i- 280 (568)
|.|..+|..++ +.+...... +.+.+.-...+ ..++.+..++ |..||..++ ..++.+......+
T Consensus 115 g~l~ald~~tG------~~~W~~~~~-~~~~~~p~v~~-------~~v~v~~~~g~l~a~d~~tG-~~~W~~~~~~~~~~ 179 (377)
T TIGR03300 115 GEVIALDAEDG------KELWRAKLS-SEVLSPPLVAN-------GLVVVRTNDGRLTALDAATG-ERLWTYSRVTPALT 179 (377)
T ss_pred CEEEEEECCCC------cEeeeeccC-ceeecCCEEEC-------CEEEEECCCCeEEEEEcCCC-ceeeEEccCCCcee
Confidence 99999999877 444433221 22221111122 3555566666 999999987 5565554322111
Q ss_pred ----EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC--CC---E-EEEEEecCCCEE
Q 008363 281 ----YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS--FA---I-WSVQVSRLTGMV 350 (568)
Q Consensus 281 ----~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~--~~---V-~~l~~sp~~~~l 350 (568)
.+.... +..++.+..++.+..+|++ +|+.++.... ..-.+.. .. + ....+ .+..+
T Consensus 180 ~~~~~sp~~~--~~~v~~~~~~g~v~ald~~--------tG~~~W~~~~---~~~~g~~~~~~~~~~~~~p~~--~~~~v 244 (377)
T TIGR03300 180 LRGSASPVIA--DGGVLVGFAGGKLVALDLQ--------TGQPLWEQRV---ALPKGRTELERLVDVDGDPVV--DGGQV 244 (377)
T ss_pred ecCCCCCEEE--CCEEEEECCCCEEEEEEcc--------CCCEeeeecc---ccCCCCCchhhhhccCCccEE--ECCEE
Confidence 111122 3467788888999999984 3654320000 0000000 00 0 01111 25678
Q ss_pred EEEeCCCeEEEEEcCCCeee
Q 008363 351 AYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 351 ~s~s~Dg~v~iwd~~~~~~~ 370 (568)
++++.+|.++.||..+++..
T Consensus 245 y~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 245 YAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred EEEEcCCEEEEEECCCCcEE
Confidence 88889999999999887543
No 326
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00081 Score=65.97 Aligned_cols=84 Identities=13% Similarity=0.243 Sum_probs=66.6
Q ss_pred ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeC
Q 008363 220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFD 297 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~ 297 (568)
+....+.+|...|.+++|+|.. .-++..++.+. |+|.|+++. ..+..+..+ ..+++++|.-+.. +|++|-.
T Consensus 184 kssq~lp~~g~~IrdlafSp~~-----~GLl~~asl~nkiki~dlet~-~~vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFN-----EGLLGLASLGNKIKIMDLETS-CVVSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhcccccchhhhhhccCccc-----cceeeeeccCceEEEEecccc-eeeeheecc-CCceeeeeccCCcceeEEecc
Confidence 4445667788899999999997 23788899998 999999987 566666555 7799999998765 5555666
Q ss_pred CCcEEEEEccccc
Q 008363 298 DGAMRIVSLLKAA 310 (568)
Q Consensus 298 dg~I~lwd~~~~~ 310 (568)
.|.|.|||+|...
T Consensus 257 nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 257 NGMVLVYDMRQPE 269 (463)
T ss_pred CceEEEEEccCCC
Confidence 9999999998754
No 327
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.48 E-value=0.06 Score=51.49 Aligned_cols=200 Identities=13% Similarity=0.140 Sum_probs=103.8
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+..+.|.|+.. .++++....+.|...+.. |+.++.+.- .+ ....
T Consensus 24 ~SGLTy~pd~~---------tLfaV~d~~~~i~els~~-G~vlr~i~l------------------------~g-~~D~- 67 (248)
T PF06977_consen 24 LSGLTYNPDTG---------TLFAVQDEPGEIYELSLD-GKVLRRIPL------------------------DG-FGDY- 67 (248)
T ss_dssp EEEEEEETTTT---------EEEEEETTTTEEEEEETT---EEEEEE-------------------------SS--SSE-
T ss_pred ccccEEcCCCC---------eEEEEECCCCEEEEEcCC-CCEEEEEeC------------------------CC-CCCc-
Confidence 55999999864 677888888888888864 566666421 22 1222
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-----eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-----SADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
-.|++. .++.++++--.++.+.++++..............+ ..++..+-.|+|++.+ +.|..+-+..
T Consensus 68 EgI~y~--g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~------~~L~v~kE~~ 139 (248)
T PF06977_consen 68 EGITYL--GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT------NRLFVAKERK 139 (248)
T ss_dssp EEEEE---STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT------TEEEEEEESS
T ss_pred eeEEEE--CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC------CEEEEEeCCC
Confidence 667776 56655555556899999998543221111111222 1355668999999987 4555555555
Q ss_pred -EEEEECCC--CCcceee--------eCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 258 -LKFWDIRD--PFRPLWD--------IHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 258 -v~lwD~~~--~~~~~~~--------~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
..|+.+.. ....+.. ....-..+.+++++|.. ++++.+.....|..+|. .|+++.
T Consensus 140 P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~---------~G~~~~---- 206 (248)
T PF06977_consen 140 PKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR---------QGRVVS---- 206 (248)
T ss_dssp SEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T---------T--EEE----
T ss_pred ChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC---------CCCEEE----
Confidence 66666654 1111111 11233457899999965 55556666888888886 465531
Q ss_pred cceEEEec--C-----CCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 326 QGLHLVNC--S-----SFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 326 ~~l~~~~~--h-----~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
...+.. | -...-.|+|.++|.+.++ +.-+..++|
T Consensus 207 --~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 207 --SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred --EEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 122222 1 023578999998864444 455555544
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.48 E-value=0.017 Score=60.24 Aligned_cols=190 Identities=16% Similarity=0.212 Sum_probs=100.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
++...-....+.++|++ +++++ ++||.-.|+..........
T Consensus 28 lg~~~~~p~~ls~npng----------r~v~V-~g~geY~iyt~~~~r~k~~---------------------------- 68 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNG----------RFVLV-CGDGEYEIYTALAWRNKAF---------------------------- 68 (443)
T ss_dssp EEE-SS--SEEEE-TTS----------SEEEE-EETTEEEEEETTTTEEEEE----------------------------
T ss_pred CCCCCcCCeeEEECCCC----------CEEEE-EcCCEEEEEEccCCccccc----------------------------
Confidence 34333345589999999 78887 5678888888444222211
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEE-EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALW-KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iw-d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
+. +..+.|. +. +.+|+-...++|.|+ ++... ....+.. ...+..|-. | .+|+..+
T Consensus 69 ---G~-g~~~vw~--~~-n~yAv~~~~~~I~I~kn~~~~-------~~k~i~~-~~~~~~If~---G------~LL~~~~ 124 (443)
T PF04053_consen 69 ---GS-GLSFVWS--SR-NRYAVLESSSTIKIYKNFKNE-------VVKSIKL-PFSVEKIFG---G------NLLGVKS 124 (443)
T ss_dssp ---EE--SEEEE---TS-SEEEEE-TTS-EEEEETTEE--------TT------SS-EEEEE----S------SSEEEEE
T ss_pred ---Cc-eeEEEEe--cC-ccEEEEECCCeEEEEEcCccc-------cceEEcC-CcccceEEc---C------cEEEEEC
Confidence 11 3788998 54 467877778999996 34322 1112211 112444432 6 6777777
Q ss_pred CCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC-CCCCCCCccCccccceEEEec
Q 008363 255 HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD-VPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 255 ~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~-~~~~g~~~~~~~~~~l~~~~~ 333 (568)
.+.|.+||..+. +.+..+... .|..+.|++++.+++..+.+ .+++++....... .+..|-. ..+..+..
T Consensus 125 ~~~i~~yDw~~~-~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e------~~f~~~~E 194 (443)
T PF04053_consen 125 SDFICFYDWETG-KLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVE------DAFELIHE 194 (443)
T ss_dssp TTEEEEE-TTT---EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G------GGEEEEEE
T ss_pred CCCEEEEEhhHc-ceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCch------hceEEEEE
Confidence 777999999987 777777532 38999999999999998755 6778776432000 0011111 13344444
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363 334 SSFAIWSVQVSRLTGMVAYCSADGTVHR 361 (568)
Q Consensus 334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~i 361 (568)
....|.+.+|..+ .++..+.. .|+.
T Consensus 195 ~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 195 ISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp E-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred ecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 3577888899765 55555555 6666
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0097 Score=64.09 Aligned_cols=180 Identities=16% Similarity=0.197 Sum_probs=113.2
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEEC
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDI 263 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~ 263 (568)
+.+..++.|+.+|.|.+.+-. .+.++.|.++... |..+...... ++|++.+.| . |+|||+
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s-------~~~~~~fqa~~~siv~~L~~~~~~------~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSS-------FQLIRGFQAYEQSIVQFLYILNKQ------NFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred CCCceEEEeeccccEEEeccc-------ceeeehheecchhhhhHhhcccCc------eEEEEEeecCCCCceEEEEecc
Confidence 678899999999999888744 2455778887777 4444433333 688887664 2 899999
Q ss_pred CCCC-----cce--eeeCC-----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 264 RDPF-----RPL--WDIHP-----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 264 ~~~~-----~~~--~~~~~-----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
.... .++ ..+.+ .+.++.+++.+.+-..+++|-.+|.|.++.-.-.. + .|.. ....
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~R-D---rgsr--------~~~~ 167 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILR-D---RGSR--------QDYS 167 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchh-c---cccc--------eeee
Confidence 6431 223 11222 35567899999999999999999999988532111 0 1211 1222
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.....+|+++++..++..++-+..-..|.+|.+.........-.+......|++++.....+.+
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFIC 231 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEE
Confidence 3345799999999998664444445689999987433111111223344567766655544444
No 330
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.35 E-value=0.017 Score=59.37 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=95.2
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
..+ .|.+++.|.-| ++|+|..+|.+.|.|++.+..+..-.-.. .......
T Consensus 85 ~~g-~vtal~~S~iG-----------Fvaigy~~G~l~viD~RGPavI~~~~i~~------------------~~~~~~~ 134 (395)
T PF08596_consen 85 KQG-PVTALKNSDIG-----------FVAIGYESGSLVVIDLRGPAVIYNENIRE------------------SFLSKSS 134 (395)
T ss_dssp -S--SEEEEEE-BTS-----------EEEEEETTSEEEEEETTTTEEEEEEEGGG--------------------T-SS-
T ss_pred cCC-cEeEEecCCCc-----------EEEEEecCCcEEEEECCCCeEEeeccccc------------------ccccccc
Confidence 355 56599998666 99999999999999998877665421110 0000122
Q ss_pred cCccceEEEEccC---CCC---CEEEEEeCCCeEEEEEccC-CCCCCCCceeEEeeCCCCCeeEEE-EccCCC-------
Q 008363 178 TQSIPLTMEWSTS---PPH---DYLLAGCHDGTVALWKFVA-SDSSIDSRPLLCFSADTLPIRAVS-WAPAES------- 242 (568)
Q Consensus 178 ~~~V~~~v~~s~~---~~g---~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h~~~V~~v~-~~p~~~------- 242 (568)
...+ +++.|... .|+ -.|++|...|.+.+|.+.- ...............|.++|..|. |+.+..
T Consensus 135 ~~~v-t~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~ 213 (395)
T PF08596_consen 135 SSYV-TSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATI 213 (395)
T ss_dssp ---E-EEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BH
T ss_pred ccCe-eEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCch
Confidence 3334 67777632 222 3789999999999998852 111001122222235667777665 322210
Q ss_pred --------CCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEc-----CCCCEEEEEeCCCcEEEEEccc
Q 008363 243 --------DSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWL-----PDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 243 --------~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-----p~~~~l~s~~~dg~I~lwd~~~ 308 (568)
...-+.+++.++...++++...+.......+ ...-....+++- ..+..|++-..+|.|++|.+..
T Consensus 214 ~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 214 SAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp HHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred hHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 0112346777777679999988763333333 222223445553 3566777778999999999943
No 331
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.35 E-value=0.0066 Score=66.82 Aligned_cols=140 Identities=11% Similarity=0.040 Sum_probs=95.0
Q ss_pred eCCCeEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCC--CCCcEEEEEcCCCEEEEECCCCCcceeeeC--
Q 008363 200 CHDGTVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDS--DSANVILTAGHGGLKFWDIRDPFRPLWDIH-- 274 (568)
Q Consensus 200 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~--~~~~~las~s~d~v~lwD~~~~~~~~~~~~-- 274 (568)
.....|+-.|+..+ +.+..+..|... |..+ .|+.... .+...|+.-+...|..||.|-....+..-.
T Consensus 501 ~~~~~ly~mDLe~G------KVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERG------KVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred CCCCceEEEecCCC------cEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 34577888888877 888888887754 5554 4432101 123556666666699999997533222111
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363 275 --PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 275 --~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s 352 (568)
......+|++-+.+| +||+|+.+|.|||||- .|. ..-..+.+-..+|.+|..+.||++|+.
T Consensus 573 ~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~---------~g~-------~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR---------LGK-------RAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ccccCCCceEEEecCCc-eEEEEeCCCcEEeecc---------cch-------hhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 123346788877766 5999999999999995 122 112356677899999999999998877
Q ss_pred EeCCCeEEEEEcC
Q 008363 353 CSADGTVHRFQLT 365 (568)
Q Consensus 353 ~s~Dg~v~iwd~~ 365 (568)
.+ +..|.+++..
T Consensus 636 Tc-~tyLlLi~t~ 647 (794)
T PF08553_consen 636 TC-KTYLLLIDTL 647 (794)
T ss_pred ee-cceEEEEEEe
Confidence 76 5677788763
No 332
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.27 E-value=0.052 Score=55.87 Aligned_cols=232 Identities=12% Similarity=0.073 Sum_probs=114.6
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceee--EEeccCC-------ccCCCCceEEEeecc-----
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMK--AIYLSSM-------KEGTDPRFVKLEPVF----- 168 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~--~l~~~~~-------~~~~~~~~v~~~~~~----- 168 (568)
|..+.|.+.. .-||+|...|.|.||.+...+... ....... ........+.+.+..
T Consensus 4 v~~vs~a~~t----------~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~ 73 (395)
T PF08596_consen 4 VTHVSFAPET----------LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLK 73 (395)
T ss_dssp EEEEEEETTT----------TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-S
T ss_pred EEEEEecCCC----------ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccc
Confidence 3488999988 689999999999999887643322 0000000 001122222221111
Q ss_pred ---eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--eeC------CCCCeeEEEE
Q 008363 169 ---RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--FSA------DTLPIRAVSW 237 (568)
Q Consensus 169 ---~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~------h~~~V~~v~~ 237 (568)
.....+....+.| ++++-+ +=.++|.|+.+|.+.|.|++.. ..+.. +.. ....|+++.|
T Consensus 74 ~gf~P~~l~~~~~g~v-tal~~S---~iGFvaigy~~G~l~viD~RGP------avI~~~~i~~~~~~~~~~~~vt~ieF 143 (395)
T PF08596_consen 74 EGFLPLTLLDAKQGPV-TALKNS---DIGFVAIGYESGSLVVIDLRGP------AVIYNENIRESFLSKSSSSYVTSIEF 143 (395)
T ss_dssp EEEEEEEEE---S-SE-EEEEE----BTSEEEEEETTSEEEEEETTTT------EEEEEEEGGG--T-SS----EEEEEE
T ss_pred cccCchhheeccCCcE-eEEecC---CCcEEEEEecCCcEEEEECCCC------eEEeeccccccccccccccCeeEEEE
Confidence 1111223447888 999977 4459999999999999999855 33332 222 2345888888
Q ss_pred ccC--CCCCCCCcEEEEEcCCC-EEEEECCC-C-C----cceeeeCCCCCCeEEEE-EcCC-C-----------------
Q 008363 238 APA--ESDSDSANVILTAGHGG-LKFWDIRD-P-F----RPLWDIHPAPKFIYGLD-WLPD-P----------------- 289 (568)
Q Consensus 238 ~p~--~~~~~~~~~las~s~d~-v~lwD~~~-~-~----~~~~~~~~h~~~i~~l~-~sp~-~----------------- 289 (568)
.-- +.|..+.-.+..|...| +.+|.+.- . . ........+.+.|..|. |+.+ |
T Consensus 144 ~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~ 223 (395)
T PF08596_consen 144 SVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGI 223 (395)
T ss_dssp EEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT-
T ss_pred EEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCC
Confidence 721 11111223555666667 88887751 1 1 11112224566665554 3222 1
Q ss_pred --CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe-----cCCCEEEEEeCCCeEEEE
Q 008363 290 --GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS-----RLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 290 --~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s-----p~~~~l~s~s~Dg~v~iw 362 (568)
..+++...+..|+++...+ ++. .+...........+.+- ..+..|++-..+|.|++|
T Consensus 224 ~i~g~vVvvSe~~irv~~~~~--------~k~--------~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 224 SIPGYVVVVSESDIRVFKPPK--------SKG--------AHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp ---EEEEEE-SSEEEEE-TT-----------E--------EEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred CcCcEEEEEcccceEEEeCCC--------Ccc--------cceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 3345555677899998843 211 12222221223334442 346788899999999999
Q ss_pred EcCCCeee
Q 008363 363 QLTAKAVE 370 (568)
Q Consensus 363 d~~~~~~~ 370 (568)
.+-.-+..
T Consensus 288 SLP~Lkei 295 (395)
T PF08596_consen 288 SLPSLKEI 295 (395)
T ss_dssp ETTT--EE
T ss_pred ECCCchHh
Confidence 99654443
No 333
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.25 E-value=0.0008 Score=42.70 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=33.4
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
++..+..|...|+++.|++.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4567788999999999999999999999999999996
No 334
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.23 E-value=0.054 Score=56.36 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=81.3
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL 258 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v 258 (568)
+.+ .++.|. .+ ..|++-..||+++++|+.......-...+....-....+..+.+...| +++..+...+
T Consensus 81 ~~i-v~~~wt--~~-e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G-------ivvLt~~~~~ 149 (410)
T PF04841_consen 81 GRI-VGMGWT--DD-EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG-------IVVLTGNNRF 149 (410)
T ss_pred CCE-EEEEEC--CC-CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC-------EEEECCCCeE
Confidence 566 899998 44 677788889999999986331000001111111122223333444454 3333333333
Q ss_pred E-EEECCCCCc--ceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 259 K-FWDIRDPFR--PLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 259 ~-lwD~~~~~~--~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
. +-+...... .+..+. .+........++.+....+....++.|.+.+-...
T Consensus 150 ~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~------------------- 210 (410)
T PF04841_consen 150 YVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF------------------- 210 (410)
T ss_pred EEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-------------------
Confidence 3 323222200 000111 01110011234445555555555666664444210
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..+. ..+++..|++||++++||.-..+|.+.+....-.
T Consensus 211 ~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 211 KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 0111 2468999999999999999999999988876433
No 335
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.23 E-value=0.14 Score=51.43 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=104.5
Q ss_pred cEEEEEeC----------CCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEc
Q 008363 123 GYLAVLLG----------NGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWS 188 (568)
Q Consensus 123 ~~las~s~----------dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s 188 (568)
.+|++|+. .|.|.++++... ..+..+.. ....+.| ++++-.
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~------------------------~~~~g~V-~ai~~~ 97 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHS------------------------TEVKGPV-TAICSF 97 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEE------------------------EEESS-E-EEEEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEE------------------------EeecCcc-eEhhhh
Confidence 68888864 288999999883 12221100 2345667 888843
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CCEEEEECCCCC
Q 008363 189 TSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GGLKFWDIRDPF 267 (568)
Q Consensus 189 ~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~v~lwD~~~~~ 267 (568)
.+ .|++|. .+.|.+|++.... .......+.. ...+.++... + ++|+.|.. ++|.++......
T Consensus 98 ---~~-~lv~~~-g~~l~v~~l~~~~---~l~~~~~~~~-~~~i~sl~~~--~------~~I~vgD~~~sv~~~~~~~~~ 160 (321)
T PF03178_consen 98 ---NG-RLVVAV-GNKLYVYDLDNSK---TLLKKAFYDS-PFYITSLSVF--K------NYILVGDAMKSVSLLRYDEEN 160 (321)
T ss_dssp ---TT-EEEEEE-TTEEEEEEEETTS---SEEEEEEE-B-SSSEEEEEEE--T------TEEEEEESSSSEEEEEEETTT
T ss_pred ---CC-EEEEee-cCEEEEEEccCcc---cchhhheecc-eEEEEEEecc--c------cEEEEEEcccCEEEEEEEccC
Confidence 33 555555 5799999999773 0122233322 2356666555 3 46666655 457766444322
Q ss_pred cceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE---E
Q 008363 268 RPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV---Q 342 (568)
Q Consensus 268 ~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l---~ 342 (568)
..+..+ ......++++.|.+++..++++..+|.|.++........ ...+.. ....+..+. ....|+++ +
T Consensus 161 ~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~-~~~~~~----~L~~~~~f~-lg~~v~~~~~~~ 234 (321)
T PF03178_consen 161 NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPN-SRDGDP----KLERISSFH-LGDIVNSFRRGS 234 (321)
T ss_dssp E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SS-TTTTTT----BEEEEEEEE--SS-EEEEEE--
T ss_pred CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcc-cccccc----cceeEEEEE-CCCccceEEEEE
Confidence 323222 233556889999977788889999999999988532110 011210 113333443 33567776 4
Q ss_pred Eec--CC------CEEEEEeCCCeEEEE
Q 008363 343 VSR--LT------GMVAYCSADGTVHRF 362 (568)
Q Consensus 343 ~sp--~~------~~l~s~s~Dg~v~iw 362 (568)
+.| .+ ..++.++.+|.|.+.
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEEE
Confidence 445 22 248888899998843
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.20 E-value=0.027 Score=58.61 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=91.1
Q ss_pred eEEEEccCCCCCEEEEEe--CC--CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 183 LTMEWSTSPPHDYLLAGC--HD--GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs--~D--g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
..-.|+ +++..++--+ .. ..+.++++.++.. ..+..+.++.. .-+|+|+|+ .++.+...|+
T Consensus 196 ~~p~ws--~~~~~~~y~~f~~~~~~~i~~~~l~~g~~----~~i~~~~g~~~---~P~fspDG~-----~l~f~~~rdg~ 261 (425)
T COG0823 196 LTPAWS--PDGKKLAYVSFELGGCPRIYYLDLNTGKR----PVILNFNGNNG---APAFSPDGS-----KLAFSSSRDGS 261 (425)
T ss_pred eccccC--cCCCceEEEEEecCCCceEEEEeccCCcc----ceeeccCCccC---CccCCCCCC-----EEEEEECCCCC
Confidence 556788 6666544331 12 3589999987733 44445555544 458999993 4555555554
Q ss_pred --EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 258 --LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 258 --v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
|.+.|+.+.. +..+....+.-..-.|+|||+.|+..++ .|.-.||-... .|... ..+...
T Consensus 262 ~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~-------~g~~~--------~riT~~ 324 (425)
T COG0823 262 PDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDL-------EGSQV--------TRLTFS 324 (425)
T ss_pred ccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECC-------CCCce--------eEeecc
Confidence 8888998764 3334333333357789999999998765 55544544321 12211 222222
Q ss_pred CCCEEEEEEecCCCEEEEEeCC-Ce--EEEEEcCCC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSAD-GT--VHRFQLTAK 367 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~D-g~--v~iwd~~~~ 367 (568)
...-..-.|+|+|.+|+..+.. |. |.+.++.++
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 2222267899999988888753 44 555555443
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.20 E-value=0.01 Score=65.40 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=74.3
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeE----EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLL----CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR 268 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~----~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~ 268 (568)
...+.|-.+..|..||.+-... +++. .+ .......|++-..+| +||.|+.+| |||||-- +.+
T Consensus 543 e~tflGls~n~lfriDpR~~~~----k~v~~~~k~Y-~~~~~Fs~~aTt~~G-------~iavgs~~G~IRLyd~~-g~~ 609 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGN----KLVDSQSKQY-SSKNNFSCFATTEDG-------YIAVGSNKGDIRLYDRL-GKR 609 (794)
T ss_pred CceEEEECCCceEEeccCCCCC----ceeecccccc-ccCCCceEEEecCCc-------eEEEEeCCCcEEeeccc-chh
Confidence 4567788888999999985421 2221 22 234568888888887 999999999 9999954 334
Q ss_pred ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
....+.+-..+|..|+.+.||++|++.+. ..|.|++..
T Consensus 610 AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t~ 647 (794)
T PF08553_consen 610 AKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDTL 647 (794)
T ss_pred hhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEEe
Confidence 44556677899999999999999988774 567778763
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.12 E-value=0.003 Score=66.48 Aligned_cols=111 Identities=14% Similarity=0.149 Sum_probs=81.1
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
+|++ ..+.+|+.|+.-|.|.+|+-..+.. ......+-.+.+..+..++.. .++|.|+..+ |.++
T Consensus 39 Tc~d----st~~~l~~GsS~G~lyl~~R~~~~~-----~~~~~~~~~~~~~~~~vs~~e------~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 39 TCVD----ATEEYLAMGSSAGSVYLYNRHTGEM-----RKLKNEGATGITCVRSVSSVE------YLVAAGTASGRVSVF 103 (726)
T ss_pred EEee----cCCceEEEecccceEEEEecCchhh-----hcccccCccceEEEEEecchh------HhhhhhcCCceEEee
Confidence 5555 4578999999999999999775521 222233345556677778887 7888888888 8888
Q ss_pred ECCCCCcce-e---ee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 262 DIRDPFRPL-W---DI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 262 D~~~~~~~~-~---~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
-+.....+- . .+ ..|...|++++|++++..+++|...|.|.+-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 776543211 1 11 14678899999999999999999999999887754
No 339
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.02 E-value=0.0014 Score=41.46 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=33.0
Q ss_pred cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363 268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 268 ~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd 305 (568)
.+...+..|...|+++.|++.+..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888999999999999999999999999996
No 340
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.00 E-value=0.16 Score=51.09 Aligned_cols=147 Identities=12% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCEEEEEeC----------CCeEEEEEccCC-CCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363 193 HDYLLAGCH----------DGTVALWKFVAS-DSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261 (568)
Q Consensus 193 g~~l~sgs~----------Dg~I~iwd~~~~-~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw 261 (568)
..+|++|+. .|.|.++++... ......+.+... ...++|++|+-- .+ .|+.+....|.+|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~-~~-------~lv~~~g~~l~v~ 112 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSF-NG-------RLVVAVGNKLYVY 112 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEE-TT-------EEEEEETTEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhh-CC-------EEEEeecCEEEEE
Confidence 357777753 289999999863 100112233333 347889999766 33 4555555559999
Q ss_pred ECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCE
Q 008363 262 DIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAI 338 (568)
Q Consensus 262 D~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V 338 (568)
++......+ ..+......+.++... +.+|++|.....|.++..+.. + ..+..+. .....+
T Consensus 113 ~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~-------~--------~~l~~va~d~~~~~v 175 (321)
T PF03178_consen 113 DLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEE-------N--------NKLILVARDYQPRWV 175 (321)
T ss_dssp EEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETT-------T--------E-EEEEEEESS-BEE
T ss_pred EccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEcc-------C--------CEEEEEEecCCCccE
Confidence 998774122 2222223356777666 669999988888888866431 1 1122222 234558
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+++.|-+++..++.+..+|.|.++...
T Consensus 176 ~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 176 TAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 888888666799999999999999985
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0046 Score=64.36 Aligned_cols=93 Identities=18% Similarity=0.320 Sum_probs=68.7
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+..+.|+|.- .+||.+..+|.|.+..+. -+.+-++ .-|...+.
T Consensus 23 i~~~ewnP~~----------dLiA~~t~~gelli~R~n-~qRlwti--------------------------p~p~~~v~ 65 (665)
T KOG4640|consen 23 IKRIEWNPKM----------DLIATRTEKGELLIHRLN-WQRLWTI--------------------------PIPGENVT 65 (665)
T ss_pred eEEEEEcCcc----------chhheeccCCcEEEEEec-cceeEec--------------------------cCCCCccc
Confidence 3479999998 699999999999988877 3444333 33445552
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPA 240 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~ 240 (568)
.+++|. |||..||+|-.||+|++.|+..+ ..+.. ...-...|.++-|.+.
T Consensus 66 ~sL~W~--~DGkllaVg~kdG~I~L~Dve~~------~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 66 ASLCWR--PDGKLLAVGFKDGTIRLHDVEKG------GRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred eeeeec--CCCCEEEEEecCCeEEEEEccCC------Cceeccccccccchheeecccc
Confidence 499999 89999999999999999999977 33332 1223556888888643
No 342
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.041 Score=57.21 Aligned_cols=157 Identities=17% Similarity=0.273 Sum_probs=87.3
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCC-CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
+....+..-+|+|++. .+.++..-... ..+.++++.++.....+. ..+
T Consensus 190 ~~~~~~~~p~ws~~~~-------~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~------------------------~~g 238 (425)
T COG0823 190 DSGSLILTPAWSPDGK-------KLAYVSFELGGCPRIYYLDLNTGKRPVILN------------------------FNG 238 (425)
T ss_pred ccCcceeccccCcCCC-------ceEEEEEecCCCceEEEEeccCCccceeec------------------------cCC
Confidence 3333455678888883 11222222233 358888888866554431 023
Q ss_pred CcCccceEEEEccCCCCCEEEE-EeCCCeEEEE--EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLA-GCHDGTVALW--KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~s-gs~Dg~I~iw--d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+. ..-+|+ |+|+.|+. ...||...|| |+... . +..+..-.+.-..=.|+|+| ..|+-.
T Consensus 239 ~~----~~P~fs--pDG~~l~f~~~rdg~~~iy~~dl~~~------~-~~~Lt~~~gi~~~Ps~spdG------~~ivf~ 299 (425)
T COG0823 239 NN----GAPAFS--PDGSKLAFSSSRDGSPDIYLMDLDGK------N-LPRLTNGFGINTSPSWSPDG------SKIVFT 299 (425)
T ss_pred cc----CCccCC--CCCCEEEEEECCCCCccEEEEcCCCC------c-ceecccCCccccCccCCCCC------CEEEEE
Confidence 32 445788 88887654 5567765555 55544 2 22232222223356789999 555555
Q ss_pred cC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc--EEEEEc
Q 008363 254 GH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA--MRIVSL 306 (568)
Q Consensus 254 s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~--I~lwd~ 306 (568)
++ .| |.+.|.........+.. .+.-..-.|+|||++|+..+. +|. |.+.|+
T Consensus 300 Sdr~G~p~I~~~~~~g~~~~riT~~--~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~ 357 (425)
T COG0823 300 SDRGGRPQIYLYDLEGSQVTRLTFS--GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDL 357 (425)
T ss_pred eCCCCCcceEEECCCCCceeEeecc--CCCCcCccCCCCCCEEEEEeccCCceeeEEecc
Confidence 44 44 77777776533233332 222237789999999998875 344 444554
No 343
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.89 E-value=0.16 Score=52.74 Aligned_cols=181 Identities=12% Similarity=0.080 Sum_probs=100.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..++.++.+|.|.-+|..+|+.+-.... .+ .+ .+ +|.-.+..++.++.+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~------------------------~~---~~-~s---sP~v~~~~v~v~~~~ 169 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKV------------------------AG---EA-LS---RPVVSDGLVLVHTSN 169 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccC------------------------CC---ce-ec---CCEEECCEEEEECCC
Confidence 4677788899999999999876644211 00 01 10 011123477778889
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCe-----eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPI-----RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA 276 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-----~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h 276 (568)
|.|..+|..++ +.+..+......+ .+-... .+ .++.++.++ +..+|..++ ..++.....
T Consensus 170 g~l~ald~~tG------~~~W~~~~~~~~~~~~~~~sP~v~-~~-------~v~~~~~~g~v~a~d~~~G-~~~W~~~~~ 234 (394)
T PRK11138 170 GMLQALNESDG------AVKWTVNLDVPSLTLRGESAPATA-FG-------GAIVGGDNGRVSAVLMEQG-QLIWQQRIS 234 (394)
T ss_pred CEEEEEEccCC------CEeeeecCCCCcccccCCCCCEEE-CC-------EEEEEcCCCEEEEEEccCC-hhhheeccc
Confidence 99999999877 4444442211000 001111 22 344455566 888888877 444433210
Q ss_pred C----C---CeEEEEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363 277 P----K---FIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 277 ~----~---~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
. . ....+.-+| .+..+++++.+|.++.+|.. +|+.++ ... ......+. ..+
T Consensus 235 ~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~--------tG~~~W--------~~~--~~~~~~~~--~~~ 294 (394)
T PRK11138 235 QPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR--------SGQIVW--------KRE--YGSVNDFA--VDG 294 (394)
T ss_pred cCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC--------CCCEEE--------eec--CCCccCcE--EEC
Confidence 0 0 011111222 25567778889999999984 465543 111 11111122 246
Q ss_pred CEEEEEeCCCeEEEEEcCCCee
Q 008363 348 GMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..|+.++.||.|..+|..+++.
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcE
Confidence 6788888999999999987754
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.88 E-value=0.007 Score=63.78 Aligned_cols=119 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.|.--+++..+ .+++.|+.-| |++|.-..+........+..+.+..+..+++..++++|+..|.|.++-+.+.
T Consensus 35 ~v~lTc~dst~------~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 35 RVKLTCVDATE------EYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE 108 (726)
T ss_pred eEEEEEeecCC------ceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence 34444455665 7999999888 9999987765444444444556678888999998999999999999988651
Q ss_pred ccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
. + +.. ..+... ..|...|++++|++++..|++|..-|.|..-.+++
T Consensus 109 ~-p----~~~------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 109 L-P----RDL------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred C-C----Ccc------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 1 1 111 111111 23778999999999999999999999999988876
No 345
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.008 Score=62.61 Aligned_cols=90 Identities=14% Similarity=0.282 Sum_probs=71.9
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee-EEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR-AVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.-+.|+ |.-++||.+..+|.|.+..++- +.+.++.-|...++ +++|.|+| ++||.|-.|| |++
T Consensus 24 ~~~ewn--P~~dLiA~~t~~gelli~R~n~-------qRlwtip~p~~~v~~sL~W~~DG------kllaVg~kdG~I~L 88 (665)
T KOG4640|consen 24 KRIEWN--PKMDLIATRTEKGELLIHRLNW-------QRLWTIPIPGENVTASLCWRPDG------KLLAVGFKDGTIRL 88 (665)
T ss_pred EEEEEc--CccchhheeccCCcEEEEEecc-------ceeEeccCCCCccceeeeecCCC------CEEEEEecCCeEEE
Confidence 678999 6778999999999999998872 56667766777777 99999999 9999999999 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLP 287 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp 287 (568)
.|+.++.........-...|.++.|.|
T Consensus 89 ~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 89 HDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEccCCCceeccccccccchheeeccc
Confidence 999988544332333456688888874
No 346
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.70 E-value=0.15 Score=41.70 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=61.3
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~ 272 (568)
+.|++||.|..|++|+-. ..+..+.. ...|.++.-...+ .|+.+-.+| |-+|+-. ..++.
T Consensus 16 ~eLlvGs~D~~IRvf~~~--------e~~~Ei~e-~~~v~~L~~~~~~-------~F~Y~l~NGTVGvY~~~---~RlWR 76 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--------EIVAEITE-TDKVTSLCSLGGG-------RFAYALANGTVGVYDRS---QRLWR 76 (111)
T ss_pred ceEEEecCCcEEEEEeCC--------cEEEEEec-ccceEEEEEcCCC-------EEEEEecCCEEEEEeCc---ceeee
Confidence 589999999999999855 56666644 5567788766664 788888877 9999864 34444
Q ss_pred eCCCCCCeEEEEEcC-C--C-CEEEEEeCCCcEE
Q 008363 273 IHPAPKFIYGLDWLP-D--P-GCVILSFDDGAMR 302 (568)
Q Consensus 273 ~~~h~~~i~~l~~sp-~--~-~~l~s~~~dg~I~ 302 (568)
...... ++++++.. + | ..|++|-.+|.|-
T Consensus 77 iKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 443233 56665543 2 2 3688887788764
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.68 E-value=0.35 Score=46.33 Aligned_cols=171 Identities=11% Similarity=0.093 Sum_probs=92.7
Q ss_pred cCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+-...+ ..|+|+ |+ +.++++....+.|..++.. + +.++.+.-. .+..-.|++..++ .++++
T Consensus 18 ~g~~~e~-SGLTy~--pd~~tLfaV~d~~~~i~els~~-G------~vlr~i~l~g~~D~EgI~y~g~~------~~vl~ 81 (248)
T PF06977_consen 18 PGILDEL-SGLTYN--PDTGTLFAVQDEPGEIYELSLD-G------KVLRRIPLDGFGDYEGITYLGNG------RYVLS 81 (248)
T ss_dssp TT--S-E-EEEEEE--TTTTEEEEEETTTTEEEEEETT---------EEEEEE-SS-SSEEEEEE-STT------EEEEE
T ss_pred CCccCCc-cccEEc--CCCCeEEEEECCCCEEEEEcCC-C------CEEEEEeCCCCCCceeEEEECCC------EEEEE
Confidence 3444556 899999 65 4477777788888877764 3 455544322 3557889998877 55555
Q ss_pred EcCCC-EEEEECCCCCcc--e---eeeC-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 253 AGHGG-LKFWDIRDPFRP--L---WDIH-----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~--~---~~~~-----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
--.++ +.++++...... . ..+. .+...+-.|+|+|.+..|+++-...-..||.++... .+..+.
T Consensus 82 ~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----~~~~~~ 156 (248)
T PF06977_consen 82 EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----GGFDLF 156 (248)
T ss_dssp ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------SS--E
T ss_pred EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----Ccccee
Confidence 54566 888888433211 1 1111 244568999999998888888777777788775321 010000
Q ss_pred CccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 322 GTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
......+.........+.+++++|.. .+++.......|..+|...
T Consensus 157 ~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G 202 (248)
T PF06977_consen 157 VSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQG 202 (248)
T ss_dssp EEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT-
T ss_pred eccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCC
Confidence 00000001111233457889999985 6666777778888888543
No 348
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.67 E-value=0.12 Score=53.78 Aligned_cols=188 Identities=14% Similarity=0.134 Sum_probs=101.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..+++++.+|.|.-+|..+|+.+-...... +.. ...+...++ + .+..++.++.+
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-------------~~~----~~~~~~sP~---v------~~~~v~~~~~~ 214 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAVKWTVNLDV-------------PSL----TLRGESAPA---T------AFGGAIVGGDN 214 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCEeeeecCCC-------------Ccc----cccCCCCCE---E------ECCEEEEEcCC
Confidence 456677788889999998887664431100 000 000111111 1 12367777888
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC----C---CeeEEEEcc--CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT----L---PIRAVSWAP--AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~---~V~~v~~~p--~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~ 272 (568)
|.+..+|..++.. +..+.... . ....+.-+| .+ ..++.++.++ +..+|+.++ ..++.
T Consensus 215 g~v~a~d~~~G~~------~W~~~~~~~~~~~~~~~~~~~~~sP~v~~------~~vy~~~~~g~l~ald~~tG-~~~W~ 281 (394)
T PRK11138 215 GRVSAVLMEQGQL------IWQQRISQPTGATEIDRLVDVDTTPVVVG------GVVYALAYNGNLVALDLRSG-QIVWK 281 (394)
T ss_pred CEEEEEEccCChh------hheeccccCCCccchhcccccCCCcEEEC------CEEEEEEcCCeEEEEECCCC-CEEEe
Confidence 9999888887632 22211000 0 000111111 12 3455555666 999999987 55544
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEE
Q 008363 273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVA 351 (568)
Q Consensus 273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~ 351 (568)
... .....+.. .+..|+.++.+|.|+.+|.. +|+.++ ....-. ....+..+ .+.+|+
T Consensus 282 ~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~--------tG~~~W--------~~~~~~~~~~~sp~v--~~g~l~ 339 (394)
T PRK11138 282 REY--GSVNDFAV--DGGRIYLVDQNDRVYALDTR--------GGVELW--------SQSDLLHRLLTAPVL--YNGYLV 339 (394)
T ss_pred ecC--CCccCcEE--ECCEEEEEcCCCeEEEEECC--------CCcEEE--------cccccCCCcccCCEE--ECCEEE
Confidence 321 11112222 46678888899999999984 465432 111000 11111122 256788
Q ss_pred EEeCCCeEEEEEcCCCeeec
Q 008363 352 YCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 352 s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.++.||.|.+.|..+++..-
T Consensus 340 v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 340 VGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred EEeCCCEEEEEECCCCCEEE
Confidence 89999999999998887653
No 349
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.012 Score=64.92 Aligned_cols=99 Identities=12% Similarity=0.195 Sum_probs=71.5
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
.+++.|+..| |...|++....++..-..-.++|++++|+.+|..++.|-.+|.|.+||+. .++++
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~--------~~k~l------ 165 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMH--------RAKIL------ 165 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEcc--------CCcce------
Confidence 4788888888 99999987644443333447789999999999999999999999999994 35443
Q ss_pred ceEEEecCCCCEEEE---EEecCCCEEEEEeCCCeEEEEEc
Q 008363 327 GLHLVNCSSFAIWSV---QVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l---~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+.+..|..+++++ .+..++..++++..-|. +|++
T Consensus 166 --~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 166 --KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred --eeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 4555555554443 44444566777777776 6665
No 350
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.51 E-value=1.2 Score=45.52 Aligned_cols=250 Identities=14% Similarity=0.151 Sum_probs=121.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+....|||+| +.||... ++.|.+++..++...+.- . .| ...+..-.+....... -...
T Consensus 44 ~~~~~~~sP~g----------~~~~~v~-~~nly~~~~~~~~~~~lT-~----dg-~~~i~nG~~dwvyeEE---v~~~- 102 (353)
T PF00930_consen 44 KLQDAKWSPDG----------KYIAFVR-DNNLYLRDLATGQETQLT-T----DG-EPGIYNGVPDWVYEEE---VFDR- 102 (353)
T ss_dssp TBSEEEE-SSS----------TEEEEEE-TTEEEEESSTTSEEEESE-S-------TTTEEESB--HHHHHH---TSSS-
T ss_pred ccccceeecCC----------CeeEEEe-cCceEEEECCCCCeEEec-c----cc-ceeEEcCccceecccc---cccc-
Confidence 34489999999 7888776 578999998886433221 1 11 2222211111100000 0111
Q ss_pred ceEEEEccCCCCCEEEEEeCC-Ce-----------------------------------EEEEEccCCCCCCCCceeEEe
Q 008363 182 PLTMEWSTSPPHDYLLAGCHD-GT-----------------------------------VALWKFVASDSSIDSRPLLCF 225 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~D-g~-----------------------------------I~iwd~~~~~~~~~~~~~~~~ 225 (568)
..++-|+ |+|++||..-.| .. +.|+|+.++.. ..+...
T Consensus 103 ~~~~~WS--pd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~----~~~~~~ 176 (353)
T PF00930_consen 103 RSAVWWS--PDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT----TELDPP 176 (353)
T ss_dssp SBSEEE---TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC----CEE---
T ss_pred ccceEEC--CCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE----EEeeec
Confidence 1568899 888888765433 22 22333332211 111111
Q ss_pred ---eCCCCCeeEEEEccCCCCCCCCc-EEEE-EcCC---C-EEEEECCCCCcceeeeCCCCCCe---EEEEEc-CCCCE-
Q 008363 226 ---SADTLPIRAVSWAPAESDSDSAN-VILT-AGHG---G-LKFWDIRDPFRPLWDIHPAPKFI---YGLDWL-PDPGC- 291 (568)
Q Consensus 226 ---~~h~~~V~~v~~~p~~~~~~~~~-~las-~s~d---~-v~lwD~~~~~~~~~~~~~h~~~i---~~l~~s-p~~~~- 291 (568)
..-...+..+.|.+++ . +++. ...+ . +.+.|..++...+.......+.| ..+.|. +++..
T Consensus 177 ~~~~~~~~yl~~v~W~~d~------~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~ 250 (353)
T PF00930_consen 177 NSLNPQDYYLTRVGWSPDG------KRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF 250 (353)
T ss_dssp HHHHTSSEEEEEEEEEETT------EEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE
T ss_pred cccCCCccCcccceecCCC------cEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEE
Confidence 1223447888999998 5 3333 3333 2 67778876533222222223333 355554 65554
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEE-EEEeCC----CeEEEEEcC
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMV-AYCSAD----GTVHRFQLT 365 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l-~s~s~D----g~v~iwd~~ 365 (568)
|.....||.-+||-+.. .|.. ...+......|.. +.|++++..| +++..+ ..|+.-++.
T Consensus 251 l~~s~~~G~~hly~~~~-------~~~~--------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 251 LWISERDGYRHLYLYDL-------DGGK--------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEEETTSSEEEEEEET-------TSSE--------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEEEEcCCCcEEEEEcc-------cccc--------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 44555677666665532 1211 2344445556644 7788886544 455543 356666666
Q ss_pred -CCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363 366 -AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN 401 (568)
Q Consensus 366 -~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~ 401 (568)
.+....- ......+ .-.++++++..++..-.-++
T Consensus 316 ~~~~~~~L-T~~~~~~-~~~~~Spdg~y~v~~~s~~~ 350 (353)
T PF00930_consen 316 SGGEPKCL-TCEDGDH-YSASFSPDGKYYVDTYSGPD 350 (353)
T ss_dssp ETTEEEES-STTSSTT-EEEEE-TTSSEEEEEEESSS
T ss_pred CCCCeEec-cCCCCCc-eEEEECCCCCEEEEEEcCCC
Confidence 4444432 2222233 34578888888776443333
No 351
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.065 Score=55.00 Aligned_cols=145 Identities=11% Similarity=0.047 Sum_probs=97.0
Q ss_pred EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC--CCcEEEEEcCCCEEEEECCCCCc-cee
Q 008363 195 YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD--SANVILTAGHGGLKFWDIRDPFR-PLW 271 (568)
Q Consensus 195 ~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--~~~~las~s~d~v~lwD~~~~~~-~~~ 271 (568)
+|.++..-..|+-.|+..+ +.+..+.-|.. |+-+.+.|+....+ +...|+.-+..+|.-||.|-... .+.
T Consensus 348 il~~~~~~~~l~klDIE~G------KIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~ 420 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERG------KIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLA 420 (644)
T ss_pred EeeCCCCcCcceeeecccc------eeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceee
Confidence 4455666677888899877 88888877776 77777888762111 23445555555699999996543 222
Q ss_pred eeCCCC----CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363 272 DIHPAP----KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 272 ~~~~h~----~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
...+|+ ....|++-.-+| +|++|+.+|.|+|||.- |.. .-..+.+-..+|..|..+.+|
T Consensus 421 ~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri---------~~~-------AKTAlPgLG~~I~hVdvtadG 483 (644)
T KOG2395|consen 421 VVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI---------GRR-------AKTALPGLGDAIKHVDVTADG 483 (644)
T ss_pred eeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh---------hhh-------hhhcccccCCceeeEEeeccC
Confidence 222332 123455554444 69999999999999971 221 113567788899999999999
Q ss_pred CEEEEEeCCCeEEEEEc
Q 008363 348 GMVAYCSADGTVHRFQL 364 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~ 364 (568)
++|+..+ +..+.+-++
T Consensus 484 Kwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATC-KTYLLLIDT 499 (644)
T ss_pred cEEEEec-ccEEEEEEE
Confidence 8877665 667777766
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.40 E-value=0.32 Score=39.76 Aligned_cols=103 Identities=13% Similarity=0.146 Sum_probs=66.2
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
|++|++..-. ....+.|+.|++|. ||+|+-. ..+..+.. .+.|++|+-... ..++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d--~dg~~eLlvGs~D~~IRvf~~~---e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFD--GDGENELLVGSDDFEIRVFKGD---EIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecC--CCCcceEEEecCCcEEEEEeCC---cEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--
Confidence 5566655422 11237899999999 9999854 45555543 556788877766 5588888999999998621
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecC---C-CEEEEEeCCCeEE
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---T-GMVAYCSADGTVH 360 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~-~~l~s~s~Dg~v~ 360 (568)
.+...+.- ..+.++++..- | .-|++|=.+|.|-
T Consensus 73 ----------------RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ----------------RLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ----------------eeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 12233322 33556555433 2 4788888888764
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.39 E-value=0.38 Score=50.31 Aligned_cols=139 Identities=12% Similarity=0.243 Sum_probs=81.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC------
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP------ 266 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~------ 266 (568)
|.+|+..+.+ .|.+||+.++ +.++.+.. .+|..|.|++++ .++|-.+.+.+.+++....
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~------~~i~~i~v--~~vk~V~Ws~~g------~~val~t~~~i~il~~~~~~~~~~~ 181 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETG------KLIRRIDV--SAVKYVIWSDDG------ELVALVTKDSIYILKYNLEAVAAIP 181 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--------EEEEESS---E-EEEEE-TTS------SEEEEE-S-SEEEEEE-HHHHHHBT
T ss_pred CcEEEEECCC-CEEEEEhhHc------ceeeEEec--CCCcEEEEECCC------CEEEEEeCCeEEEEEecchhccccc
Confidence 6677777644 8999999977 78888753 238999999999 8999999988777765422
Q ss_pred ---C-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363 267 ---F-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ 342 (568)
Q Consensus 267 ---~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~ 342 (568)
. ..+..++.-...|.+.+|.-+ .++-.+.. .|+. +. .|+. .++..-..+++=+.
T Consensus 182 ~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~--------~Ge~---------~~i~~ld~~~yllg 239 (443)
T PF04053_consen 182 EEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LV--------NGET---------GIIAHLDKPLYLLG 239 (443)
T ss_dssp TTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EE--------TTEE---------EEEEE-SS--EEEE
T ss_pred ccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EE--------cCCc---------ceEEEcCCceEEEE
Confidence 0 123333332567889999865 55555555 6765 31 2332 24443456778888
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 343 VSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
+.+....|.....|+.|..+.+....
T Consensus 240 y~~~~~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 240 YLPKENRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EETTTTEEEEE-TT--EEEEE--HHH
T ss_pred EEccCCEEEEEECCCCEEEEEECHHH
Confidence 88888899999999999999886443
No 354
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=1.8 Score=44.59 Aligned_cols=200 Identities=16% Similarity=0.133 Sum_probs=126.3
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.++.++.+. ...+....++.|.+.|..+......+. .+. .|..
T Consensus 78 ~i~v~~~~~---------~vyv~~~~~~~v~vid~~~~~~~~~~~-------------------------vG~---~P~~ 120 (381)
T COG3391 78 GVAVNPAGN---------KVYVTTGDSNTVSVIDTATNTVLGSIP-------------------------VGL---GPVG 120 (381)
T ss_pred ceeeCCCCC---------eEEEecCCCCeEEEEcCcccceeeEee-------------------------ecc---CCce
Confidence 677888874 466666677999999977755554431 122 1477
Q ss_pred EEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EE
Q 008363 185 MEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LK 259 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~ 259 (568)
++|. +++..+.++.. ++++.+.|..+. ........-..+ ..+++.|++ ..+..+. .++ |.
T Consensus 121 ~~~~--~~~~~vYV~n~~~~~~~vsvid~~t~------~~~~~~~vG~~P-~~~a~~p~g------~~vyv~~~~~~~v~ 185 (381)
T COG3391 121 LAVD--PDGKYVYVANAGNGNNTVSVIDAATN------KVTATIPVGNTP-TGVAVDPDG------NKVYVTNSDDNTVS 185 (381)
T ss_pred EEEC--CCCCEEEEEecccCCceEEEEeCCCC------eEEEEEecCCCc-ceEEECCCC------CeEEEEecCCCeEE
Confidence 8887 77766666655 688888887766 555544333344 899999999 5444444 455 99
Q ss_pred EEECCCCCccee-e---eCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 260 FWDIRDPFRPLW-D---IHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 260 lwD~~~~~~~~~-~---~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
+.|.... .... . ...-...-..+.++|+|.++...... +.+...|... +.... ..+.
T Consensus 186 vi~~~~~-~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~--------~~v~~-------~~~~ 249 (381)
T COG3391 186 VIDTSGN-SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT--------GNVTA-------TDLP 249 (381)
T ss_pred EEeCCCc-ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC--------ceEEE-------eccc
Confidence 9997654 2221 0 01112233678999999987776443 5888888843 22210 0011
Q ss_pred cCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeecc
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~ 372 (568)
.-......+.++|+|.++.+.. ..+.+.+-|..+..+...
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 1111345688999998887774 448899988877655543
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=0.15 Score=52.46 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=70.4
Q ss_pred EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
-+.|-.|..|.-||.+-... ..+....+| .....|++-..+| +||.||.+| |+|||- .+.+.-
T Consensus 397 TlvGLs~n~vfriDpRv~~~----~kl~~~q~kqy~~k~nFsc~aTT~sG-------~IvvgS~~GdIRLYdr-i~~~AK 464 (644)
T KOG2395|consen 397 TLVGLSDNSVFRIDPRVQGK----NKLAVVQSKQYSTKNNFSCFATTESG-------YIVVGSLKGDIRLYDR-IGRRAK 464 (644)
T ss_pred cEEeecCCceEEecccccCc----ceeeeeeccccccccccceeeecCCc-------eEEEeecCCcEEeehh-hhhhhh
Confidence 34566788999999884421 122222233 2346677766776 999999999 999997 343555
Q ss_pred eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 271 WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 271 ~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
..+.+...+|..|..+.+|.+|++.+ +..+.|.++.
T Consensus 465 TAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 465 TALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred hcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 56777889999999999999888766 5567777764
No 356
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.01 E-value=1.4 Score=41.52 Aligned_cols=136 Identities=11% Similarity=0.077 Sum_probs=84.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
.+++.|+..+.+.--|..+|...-. .. .+..-. +..+- -|++++.|+..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We-------------------~i------lg~RiE-~sa~v-----vgdfVV~GCy~ 72 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWE-------------------AI------LGVRIE-CSAIV-----VGDFVVLGCYS 72 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEee-------------------hh------hCceee-eeeEE-----ECCEEEEEEcc
Confidence 5777888888888888888765422 11 111100 02222 25789999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeE
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIY 281 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~ 281 (568)
|.+.+.++.++ .....|..-..-=......+++ .+|..|+.|+ .+..|.++. .+++..+--.+...
T Consensus 73 g~lYfl~~~tG------s~~w~f~~~~~vk~~a~~d~~~------glIycgshd~~~yalD~~~~-~cVykskcgG~~f~ 139 (354)
T KOG4649|consen 73 GGLYFLCVKTG------SQIWNFVILETVKVRAQCDFDG------GLIYCGSHDGNFYALDPKTY-GCVYKSKCGGGTFV 139 (354)
T ss_pred CcEEEEEecch------hheeeeeehhhhccceEEcCCC------ceEEEecCCCcEEEeccccc-ceEEecccCCceec
Confidence 99999999987 4444443322211223456776 7999999999 999999976 77766543233234
Q ss_pred EEEEcCCCCEEEEEeCCCcEE
Q 008363 282 GLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 282 ~l~~sp~~~~l~s~~~dg~I~ 302 (568)
+-+..|-...|+.+...|.|.
T Consensus 140 sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 140 SPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceecCCCceEEEEeccceEE
Confidence 455666333455555555443
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.86 E-value=0.61 Score=44.51 Aligned_cols=238 Identities=16% Similarity=0.120 Sum_probs=130.7
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcE-EEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSL-EVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V-~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+.|.|+|..+ .-++.+-.-|+. .++|..+.+....+...+ ..++.||-
T Consensus 71 Hgi~~~p~~~---------ravafARrPGtf~~vfD~~~~~~pv~~~s~~------------------~RHfyGHG---- 119 (366)
T COG3490 71 HGIAFHPALP---------RAVAFARRPGTFAMVFDPNGAQEPVTLVSQE------------------GRHFYGHG---- 119 (366)
T ss_pred CCeecCCCCc---------ceEEEEecCCceEEEECCCCCcCcEEEeccc------------------Cceeeccc----
Confidence 3678888776 677777777764 588888877665552221 11224442
Q ss_pred eEEEEccCCCCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
.|+ ++|.+|...-.| |.|-|||.+.+ .+-+..+..|.-....+.|.++| ..++.+.. +
T Consensus 120 ---vfs--~dG~~LYATEndfd~~rGViGvYd~r~~-----fqrvgE~~t~GiGpHev~lm~DG------rtlvvanG-G 182 (366)
T COG3490 120 ---VFS--PDGRLLYATENDFDPNRGVIGVYDAREG-----FQRVGEFSTHGIGPHEVTLMADG------RTLVVANG-G 182 (366)
T ss_pred ---ccC--CCCcEEEeecCCCCCCCceEEEEecccc-----cceecccccCCcCcceeEEecCC------cEEEEeCC-c
Confidence 345 889887765443 78999999854 35666888888888999999999 67766543 2
Q ss_pred EEEE--------------------ECCCCCc-ceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 258 LKFW--------------------DIRDPFR-PLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 258 v~lw--------------------D~~~~~~-~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
|... |..++.. ...++. -+.-.|..++..+||+.++.+-..|.-. |+..+- ..-
T Consensus 183 IethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~--d~ppLv-g~~ 259 (366)
T COG3490 183 IETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRN--DLPPLV-GHF 259 (366)
T ss_pred eecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCc--cCCcce-eec
Confidence 3333 2222210 001111 2334566677777776554443222100 000000 000
Q ss_pred CCCCCccCccccceEE----EecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363 315 ATGKPFAGTKQQGLHL----VNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED 389 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~----~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 389 (568)
..|+++ +.+.. ...-..-|-+++.+.+..+++..+ ..+...+||..++.+..+.. ...|.-+...
T Consensus 260 ~~g~~l-----~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~-----l~daaGva~~ 329 (366)
T COG3490 260 RKGEPL-----EFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA-----LPDAAGVAAA 329 (366)
T ss_pred cCCCcC-----cccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc-----ccccccceec
Confidence 013222 11110 011223566788887655555444 55668899999998776521 1223344455
Q ss_pred CCceEEcccCCCC
Q 008363 390 ESAITVNTPLDNT 402 (568)
Q Consensus 390 ~~~i~~~~~~~~~ 402 (568)
.+.+.+.+....+
T Consensus 330 ~~gf~vssg~G~~ 342 (366)
T COG3490 330 KGGFAVSSGQGRI 342 (366)
T ss_pred cCceEEecCCceE
Confidence 5556666655555
No 358
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.80 E-value=0.28 Score=51.36 Aligned_cols=121 Identities=15% Similarity=0.241 Sum_probs=73.6
Q ss_pred CCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEEccCCCCCCCCc
Q 008363 176 GGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~~~ 248 (568)
|...-| ..+.|.|.-. .-.|++.-.-..|.||-+...... ..+.+..-..+- ---..+.|+|.. .
T Consensus 54 GqFEhV-~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e-~~K~l~sQtcEi~e~~pvLpQGCVWHPk~------~ 125 (671)
T PF15390_consen 54 GQFEHV-HGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTE-RNKLLMSQTCEIREPFPVLPQGCVWHPKK------A 125 (671)
T ss_pred ecccee-eeeeecCcccCCCCceEEEeccceEEEEEeccCccc-cccceeeeeeeccCCcccCCCcccccCCC------c
Confidence 444556 8899996411 214555555789999998633211 112222211111 113467899997 6
Q ss_pred EEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEE
Q 008363 249 VILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVS 305 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd 305 (568)
+|+.-.... -.+++++.....+ ..+ ...+.|.|.+|.+||+.|+++ +..=.-++||
T Consensus 126 iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 126 ILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred eEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 776655544 5667777654444 334 446789999999999998876 4444567887
No 359
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.78 E-value=0.83 Score=49.08 Aligned_cols=107 Identities=8% Similarity=-0.036 Sum_probs=66.9
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCc
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFR 268 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~ 268 (568)
++|++... .+++|.+.|..+... .....+..+.. ......|.++|+| ++++.++. +. |.|.|+.+...
T Consensus 286 kdGK~~~V--~gn~V~VID~~t~~~-~~~~v~~yIPV-GKsPHGV~vSPDG------kylyVanklS~tVSVIDv~k~k~ 355 (635)
T PRK02888 286 KAGKFKTI--GGSKVPVVDGRKAAN-AGSALTRYVPV-PKNPHGVNTSPDG------KYFIANGKLSPTVTVIDVRKLDD 355 (635)
T ss_pred hCCCEEEE--CCCEEEEEECCcccc-CCcceEEEEEC-CCCccceEECCCC------CEEEEeCCCCCcEEEEEChhhhh
Confidence 45655554 256799999875100 00134444432 4457889999999 66665554 55 99999987521
Q ss_pred -----------ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 269 -----------PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 269 -----------~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
.+....- ...-...+|.++|....+-.-|..|..|++..
T Consensus 356 ~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 356 LFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1112211 12234678999998666667799999999864
No 360
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.70 E-value=1.9 Score=44.10 Aligned_cols=182 Identities=14% Similarity=0.176 Sum_probs=84.9
Q ss_pred CCCCCcceEEEeecc----C--C-ceeeEEEEccCCCCcccccCcccEEEEEeCC------CcEEEEECCCCceeeEEec
Q 008363 84 PKDIALPRVVLCLAH----N--G-KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------GSLEVWEVPLLRTMKAIYL 150 (568)
Q Consensus 84 ~~~~~~p~~~~~~~h----~--~-~~v~~v~~sp~~~~~~~~~~~~~~las~s~d------g~V~iwd~~~~~~~~~l~~ 150 (568)
..+...|++...+.- . + ..-+.+..-|+| .+++++-.| |-+.+.|-++.+.....
T Consensus 106 ~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G----------~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~W-- 173 (461)
T PF05694_consen 106 KTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG----------RIMISALGDADGNGPGGFVLLDGETFEVKGRW-- 173 (461)
T ss_dssp -S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS------------EEEEEEEETTS-S--EEEEE-TTT--EEEE---
T ss_pred CCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc----------cEEEEeccCCCCCCCCcEEEEcCcccccccee--
Confidence 345667777775532 1 1 123345566777 577776432 45677777765544332
Q ss_pred cCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe--------------------CCCeEEEEEc
Q 008363 151 SSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC--------------------HDGTVALWKF 210 (568)
Q Consensus 151 ~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs--------------------~Dg~I~iwd~ 210 (568)
+. .......++.+-|. |..+.++|.. .-.++.+||+
T Consensus 174 ---------------e~-------~~~~~~~gYDfw~q--pr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 174 ---------------EK-------DRGPQPFGYDFWYQ--PRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp ----------------S-------B-TT------EEEE--TTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred ---------------cc-------CCCCCCCCCCeEEc--CCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 21 11111223777777 5566777753 2357999999
Q ss_pred cCCCCCCCCceeEEeeCCC--CCeeEEEEccCCCCCCCCcEEEEEcCCC-EE-EEECCCCC---cceeeeCC-----C--
Q 008363 211 VASDSSIDSRPLLCFSADT--LPIRAVSWAPAESDSDSANVILTAGHGG-LK-FWDIRDPF---RPLWDIHP-----A-- 276 (568)
Q Consensus 211 ~~~~~~~~~~~~~~~~~h~--~~V~~v~~~p~~~~~~~~~~las~s~d~-v~-lwD~~~~~---~~~~~~~~-----h-- 276 (568)
.+. +.++++.--. ..+..|.|..+-. ...=|+.+-... |. +|....+. +.+..+.. -
T Consensus 230 ~~r------~~~Q~idLg~~g~~pLEvRflH~P~---~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 230 STR------KLLQTIDLGEEGQMPLEVRFLHDPD---ANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp TTT------EEEEEEES-TTEEEEEEEEE-SSTT-----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred CCC------cEeeEEecCCCCCceEEEEecCCCC---ccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 977 7777775432 2356677765430 113344444443 44 44433332 11222211 1
Q ss_pred ----------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccc
Q 008363 277 ----------PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAA 310 (568)
Q Consensus 277 ----------~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~ 310 (568)
..-|+.|..|.|.++|..++. +|.|+.||+....
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 345799999999999999877 9999999997644
No 361
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.66 E-value=3.3 Score=43.16 Aligned_cols=197 Identities=16% Similarity=0.148 Sum_probs=102.3
Q ss_pred EEEEccCCCCcccccCcccEEEEE-eCCC----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVL-LGNG----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~-s~dg----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.+.++|++ ++||.+ +..| .|+|+|+.+++.+..... .
T Consensus 128 ~~~~Spdg----------~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~----------------------------~ 169 (414)
T PF02897_consen 128 GFSVSPDG----------KRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE----------------------------N 169 (414)
T ss_dssp EEEETTTS----------SEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE----------------------------E
T ss_pred eeeECCCC----------CEEEEEecCCCCceEEEEEEECCCCcCcCCccc----------------------------c
Confidence 57889999 666655 4444 499999999866543100 0
Q ss_pred ccceEEEEccCCCCCEEEEEeCCC-----------eEEEEEccCCCCCCCCceeEEeeCCCCC--eeEEEEccCCCCCCC
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDG-----------TVALWKFVASDSSIDSRPLLCFSADTLP--IRAVSWAPAESDSDS 246 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~~~~~ 246 (568)
.-+..+.|. +++..|+....+. .|..|.+.+... .....|...... ...+..++++
T Consensus 170 ~~~~~~~W~--~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~----~d~lvfe~~~~~~~~~~~~~s~d~----- 238 (414)
T PF02897_consen 170 PKFSSVSWS--DDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS----EDELVFEEPDEPFWFVSVSRSKDG----- 238 (414)
T ss_dssp EESEEEEEC--TTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG----G-EEEEC-TTCTTSEEEEEE-TTS-----
T ss_pred cccceEEEe--CCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH----hCeeEEeecCCCcEEEEEEecCcc-----
Confidence 001348999 7777766555433 377778765521 323455443333 5678889998
Q ss_pred CcEEEE-EcC--C-C-EEEEECCCC---CcceeeeCCCCCCe-EEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCC
Q 008363 247 ANVILT-AGH--G-G-LKFWDIRDP---FRPLWDIHPAPKFI-YGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 247 ~~~las-~s~--d-~-v~lwD~~~~---~~~~~~~~~h~~~i-~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~ 314 (568)
++|+. ... + . +.+.|+... ......+......+ ..+... .+.+++.+. ..+.|.-.++.....
T Consensus 239 -~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~--- 313 (414)
T PF02897_consen 239 -RYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSP--- 313 (414)
T ss_dssp -SEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSG---
T ss_pred -cEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEeccccccc---
Confidence 56543 322 3 4 888898874 22333333323333 444444 444444442 256677777744220
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE-EEeCCC--eEEEEEcC
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA-YCSADG--TVHRFQLT 365 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg--~v~iwd~~ 365 (568)
+ .....+..|...+.-..+...+.+|+ ..-.++ .|+++++.
T Consensus 314 --~--------~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 314 --A--------EWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp --G--------GEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred --c--------cceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 0 01124455555333333444454444 444444 47888887
No 362
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.59 E-value=2.8 Score=41.68 Aligned_cols=127 Identities=12% Similarity=0.011 Sum_probs=74.9
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcC------C----CEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGH------G----GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D 298 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~------d----~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d 298 (568)
...+.+...|+| .+.++... . .=.||-+.-....+..+..+-..-+.|+||||++.|+.+-. .
T Consensus 111 ~r~ND~~v~pdG------~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~ 184 (307)
T COG3386 111 NRPNDGVVDPDG------RIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPA 184 (307)
T ss_pred CCCCceeEcCCC------CEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCC
Confidence 346788889998 56555433 1 12344444221444444444444489999999998888744 6
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC-eEEEEEcCCCeeecc
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG-TVHRFQLTAKAVEKD 372 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg-~v~iwd~~~~~~~~~ 372 (568)
+.|+-|++... +|.... ......+....+..-.++...+|.+.+++..+| .|.+|+.. ++....
T Consensus 185 ~~i~r~~~d~~------~g~~~~---~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 185 NRIHRYDLDPA------TGPIGG---RRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred CeEEEEecCcc------cCccCC---cceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEE
Confidence 88888888531 122210 011122333445556778877887776555554 89999988 544443
No 363
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.58 E-value=0.55 Score=50.82 Aligned_cols=107 Identities=16% Similarity=0.190 Sum_probs=68.9
Q ss_pred EEEEEcCCC--EEEEECCCCCcceeeeCCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 249 VILTAGHGG--LKFWDIRDPFRPLWDIHPAPKFIYGLDWL--PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 249 ~las~s~d~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~s--p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
.+|....++ +.|||.+.........-...+.|..+.|. |+++.+++.|..+.|.+|--....+.. .+ ..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~--~~-----p~ 114 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN--KG-----PS 114 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc--CC-----cc
Confidence 555555544 99999997732221111457789999985 689999999999999999653322110 11 11
Q ss_pred ccceEE--EecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 325 QQGLHL--VNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 325 ~~~l~~--~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
..++.. +..|+ .+|.+..|.++|.+++.+ +..+.|++-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 123332 23444 689999999988766555 467888765
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.54 E-value=0.031 Score=51.35 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=60.0
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE-EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV-SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v-~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
+..+++|+.+|.|.+|..... ......+..-...|.++ .--.++ .+..+++.++ |+.|.+.-. +.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~-----g~~~d~~~s~~e~i~~~Ip~~~~~------~~~c~~~~dg~ir~~n~~p~-k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE-----GAHSDRVCSGEESIDLGIPNGRDS------SLGCVGAQDGRIRACNIKPN-KVL 137 (238)
T ss_pred CceEEeecccceEEEecCCcc-----chHHHhhhcccccceecccccccc------ceeEEeccCCceeeeccccC-cee
Confidence 468999999999999998722 11111111112223332 222232 5788888888 999999854 555
Q ss_pred eeeCCCC-CCeEEEEEcCCCCEEEEE--eCCCcEEEEEc
Q 008363 271 WDIHPAP-KFIYGLDWLPDPGCVILS--FDDGAMRIVSL 306 (568)
Q Consensus 271 ~~~~~h~-~~i~~l~~sp~~~~l~s~--~~dg~I~lwd~ 306 (568)
-....|. .++..+..+..+++|.++ |.|..++.|++
T Consensus 138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred eeeccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 5555555 444444444455555555 55666666666
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.38 E-value=0.057 Score=49.69 Aligned_cols=104 Identities=18% Similarity=0.264 Sum_probs=61.6
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
.-|++|+.+|.|.+|+......+.... ..-...|-+.|. ...++.+..+++.|
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~-------------------------~s~~e~i~~~Ip--~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRV-------------------------CSGEESIDLGIP--NGRDSSLGCVGAQD 123 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhh-------------------------hcccccceeccc--cccccceeEEeccC
Confidence 578999999999999887411111100 111112201222 12345588999999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEE--cCCC-EEEEECCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTA--GHGG-LKFWDIRD 265 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~--s~d~-v~lwD~~~ 265 (568)
|.|+.|++... +.+.....|+ .++..+.....+ .+++.+ |.|. +++|++..
T Consensus 124 g~ir~~n~~p~------k~~g~~g~h~~~~~e~~ivv~sd------~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 124 GRIRACNIKPN------KVLGYVGQHNFESGEELIVVGSD------EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CceeeeccccC------ceeeeeccccCCCcceeEEecCC------ceEEeeccccchhhhhcchhh
Confidence 99999999865 5555555566 344444444444 566666 5565 77777653
No 366
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.22 E-value=2.4 Score=45.34 Aligned_cols=202 Identities=11% Similarity=0.131 Sum_probs=104.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
+.+.+++.++.|.-.|..+++.+-.+...... .......+...+... ++..++.++.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~-------------------~~~~~~~~~~g~~~~---~~~~V~v~~~~ 119 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPA-------------------DRGCCDVVNRGVAYW---DPRKVFFGTFD 119 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCc-------------------cccccccccCCcEEc---cCCeEEEecCC
Confidence 46777888899999999988766443111000 000000000111211 22588888899
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCC-----e-eEEEEccCCCCCCCCcEEEEEc---------CCC-EEEEECCCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLP-----I-RAVSWAPAESDSDSANVILTAG---------HGG-LKFWDIRDP 266 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~-----V-~~v~~~p~~~~~~~~~~las~s---------~d~-v~lwD~~~~ 266 (568)
|.|.-+|..++ +.+-.+...... + .+..+.. + +++.++ .++ |..+|..++
T Consensus 120 g~v~AlD~~TG------~~~W~~~~~~~~~~~~~i~ssP~v~~-~-------~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 120 GRLVALDAETG------KQVWKFGNNDQVPPGYTMTGAPTIVK-K-------LVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred CeEEEEECCCC------CEeeeecCCCCcCcceEecCCCEEEC-C-------EEEEeccccccccCCCCcEEEEEECCCC
Confidence 99999999877 555444322110 1 1111221 2 333332 345 888898887
Q ss_pred CcceeeeCCC-C-------------------CCe-EEEEEcCCCCEEEEEeCCC------------------cEEEEEcc
Q 008363 267 FRPLWDIHPA-P-------------------KFI-YGLDWLPDPGCVILSFDDG------------------AMRIVSLL 307 (568)
Q Consensus 267 ~~~~~~~~~h-~-------------------~~i-~~l~~sp~~~~l~s~~~dg------------------~I~lwd~~ 307 (568)
+.++.+... . ..+ ...++.+.+..++.++.++ .|.-+|.
T Consensus 186 -~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~- 263 (488)
T cd00216 186 -KLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA- 263 (488)
T ss_pred -ceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC-
Confidence 555544321 1 011 1345555567788877665 6777787
Q ss_pred ccccCCCCCCCCccCccccc--eEEEecCCCCEE-EEEEecCC---CEEEEEeCCCeEEEEEcCCCeee
Q 008363 308 KAAYDVPATGKPFAGTKQQG--LHLVNCSSFAIW-SVQVSRLT---GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~--l~~~~~h~~~V~-~l~~sp~~---~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.+|+.++...... +..+.+...++. .+. .-++ .+++.++.+|.+...|..+++..
T Consensus 264 -------~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 264 -------DTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred -------CCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 3576653100000 000011111111 110 0123 26788888999999999988654
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.064 Score=59.51 Aligned_cols=100 Identities=17% Similarity=0.203 Sum_probs=70.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW 271 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~ 271 (568)
+..++.|+..|.|...|+... ..++..-..-.++|++++|+.+| .+++.|-.+| |.+||+... ..+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-----L~~~~~ne~v~~~Vtsvafn~dg------~~l~~G~~~G~V~v~D~~~~-k~l~ 166 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-----LGPLHQNERVQGPVTSVAFNQDG------SLLLAGLGDGHVTVWDMHRA-KILK 166 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-----cchhhcCCccCCcceeeEecCCC------ceeccccCCCcEEEEEccCC-ccee
Confidence 458999999999999988753 12322222346789999999999 7888888888 999999976 6666
Q ss_pred eeCCCCCCeE---EEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 272 DIHPAPKFIY---GLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 272 ~~~~h~~~i~---~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
.+..|..+.+ .+.|..++..++++...|. +|.+
T Consensus 167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 6655544443 3344445566777666665 5665
No 368
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.09 E-value=1 Score=47.40 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=91.0
Q ss_pred cCccceEEEEccCCCCCEEEEEe---CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGC---HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
..++ ..++|- ||+.++-.. .+|.+++= +...+..| ..|..+.|.|-+. ...|.+||.-.
T Consensus 19 iHPv-hGlaWT---DGkqVvLT~L~l~~gE~kfG---------ds~viGqF----EhV~GlsW~P~~~-~~~paLLAVQH 80 (671)
T PF15390_consen 19 IHPV-HGLAWT---DGKQVVLTDLQLHNGEPKFG---------DSKVIGQF----EHVHGLSWAPPCT-ADTPALLAVQH 80 (671)
T ss_pred hccc-cceEec---CCCEEEEEeeeeeCCccccC---------CccEeecc----ceeeeeeecCccc-CCCCceEEEec
Confidence 3455 789998 776554332 22332221 22334444 4599999999862 33456777766
Q ss_pred CCCEEEEECCCCC----cceeeeC---CCCCCe--EEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 255 HGGLKFWDIRDPF----RPLWDIH---PAPKFI--YGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 255 ~d~v~lwD~~~~~----~~~~~~~---~h~~~i--~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
...|.+|-+.-.. +.+..-. ...-+| ..+.|+|....|++-.....-.+++++.- +..++
T Consensus 81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d-------~srVk---- 149 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCD-------SSRVK---- 149 (671)
T ss_pred cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeC-------CceEE----
Confidence 6669999987321 1111110 111222 46789999888877665444456777541 21110
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLTA 366 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~ 366 (568)
..+ ...+.|.|.+|.+||+.|+.+ +..=.-+|||-..
T Consensus 150 ---aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 150 ---ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ---Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 123 356789999999999665544 4445578898643
No 369
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.09 E-value=1.2 Score=48.55 Aligned_cols=155 Identities=13% Similarity=0.114 Sum_probs=84.8
Q ss_pred ccceEEEEccCCCCCEEEEEe------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 180 SIPLTMEWSTSPPHDYLLAGC------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+ ...+.+ ++|+.++..- .|+.-.||-...+. .......+. ....-.|+|++ ..|++.
T Consensus 351 ~v-sspaiS--pdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-----~~~~lt~g~--~~t~PsWspDG------~~lw~v 414 (591)
T PRK13616 351 NI-TSAALS--RSGRQVAAVVTLGRGAPDPASSLWVGPLGG-----VAVQVLEGH--SLTRPSWSLDA------DAVWVV 414 (591)
T ss_pred Cc-ccceEC--CCCCEEEEEEeecCCCCCcceEEEEEeCCC-----cceeeecCC--CCCCceECCCC------CceEEE
Confidence 44 667777 8888877665 24444444433221 122222232 37788999998 566666
Q ss_pred cCC-C-EEE-----------EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363 254 GHG-G-LKF-----------WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 254 s~d-~-v~l-----------wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
..+ . +++ .++..+ .... ...+.|..+.|||||..|+... ++.|++--+.... .|. .
T Consensus 415 ~dg~~~~~v~~~~~~gql~~~~vd~g-e~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~-----~G~-~ 483 (591)
T PRK13616 415 VDGNTVVRVIRDPATGQLARTPVDAS-AVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE-----DGQ-Y 483 (591)
T ss_pred ecCcceEEEeccCCCceEEEEeccCc-hhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC-----CCc-e
Confidence 543 2 333 333322 1111 2255799999999999998876 4777774332211 232 1
Q ss_pred cCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 321 AGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 321 ~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
. ......+ .+-...+.++.|..++.++ ++..++...+|.+.
T Consensus 484 ~---l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 484 A---LTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred e---ecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 0 0111122 2233446889999988855 55555555566553
No 370
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.08 E-value=4.5 Score=42.18 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
.+++..|+.||++++|+.-..+|.+.+...
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ss 245 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSS 245 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence 467999999999999999999999988865
No 371
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.05 E-value=0.38 Score=49.11 Aligned_cols=103 Identities=12% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCCCEEEEEe---------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEE
Q 008363 191 PPHDYLLAGC---------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFW 261 (568)
Q Consensus 191 ~~g~~l~sgs---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lw 261 (568)
||+++++... ..+.+.|||+.++ .. ..+......+....|+|+| +.+|-.....|.++
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~------~~-~~l~~~~~~~~~~~~sP~g------~~~~~v~~~nly~~ 68 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIYDIETG------EI-TPLTPPPPKLQDAKWSPDG------KYIAFVRDNNLYLR 68 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEEETTTT------EE-EESS-EETTBSEEEE-SSS------TEEEEEETTEEEEE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEEecCCC------ce-EECcCCccccccceeecCC------CeeEEEecCceEEE
Confidence 5666666532 2467899999876 22 2222225678999999999 88888877669999
Q ss_pred ECCCCCcceeeeCCC----------------CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEc
Q 008363 262 DIRDPFRPLWDIHPA----------------PKFIYGLDWLPDPGCVILSFD-DGAMRIVSL 306 (568)
Q Consensus 262 D~~~~~~~~~~~~~h----------------~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~ 306 (568)
++.++.....+..+. -+.-..+-||||+++|+.... +..|..+.+
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEe
Confidence 987662211222220 011256889999999998744 666777766
No 372
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.03 E-value=2.5 Score=46.18 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=59.0
Q ss_pred eEEEEccCCCCCEEEEEeCC------------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHD------------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
+.-.|+ |+|..|++.... +.+.+.++..+ .... ...+.|..+.|+|+| ..+
T Consensus 400 t~PsWs--pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~g------e~~~---~~~g~Issl~wSpDG------~Ri 462 (591)
T PRK13616 400 TRPSWS--LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDAS------AVAS---RVPGPISELQLSRDG------VRA 462 (591)
T ss_pred CCceEC--CCCCceEEEecCcceEEEeccCCCceEEEEeccCc------hhhh---ccCCCcCeEEECCCC------CEE
Confidence 667888 787777766532 22333333322 1111 224579999999999 666
Q ss_pred EEEcCCCEEE---EECCCCCcce---eeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 251 LTAGHGGLKF---WDIRDPFRPL---WDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 251 as~s~d~v~l---wD~~~~~~~~---~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
|....+.|.+ -....+...+ ..+. .-...+.++.|.+++..+ ++..++...+|.+
T Consensus 463 A~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 463 AMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 6555433665 4433332112 1122 223346889999999854 5555444455554
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=5.4 Score=41.13 Aligned_cols=184 Identities=14% Similarity=0.070 Sum_probs=109.0
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG- 257 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~- 257 (568)
..++.+ +.+. .+++...+..|.+.|.... ........ ......+++++++ ..+..+.. +.
T Consensus 77 ~~i~v~--~~~~~vyv~~~~~~~v~vid~~~~------~~~~~~~v-G~~P~~~~~~~~~------~~vYV~n~~~~~~~ 141 (381)
T COG3391 77 AGVAVN--PAGNKVYVTTGDSNTVSVIDTATN------TVLGSIPV-GLGPVGLAVDPDG------KYVYVANAGNGNNT 141 (381)
T ss_pred cceeeC--CCCCeEEEecCCCCeEEEEcCccc------ceeeEeee-ccCCceEEECCCC------CEEEEEecccCCce
Confidence 566665 5666 5555556689999996654 34443322 1256789999998 44444433 45
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF 336 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~ 336 (568)
+.+.|..+. ........-..+ ..++++|+|..++... .++.|.+.|.....-.. +. ....+....
T Consensus 142 vsvid~~t~-~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~---~~--------~~~~~~~~~- 207 (381)
T COG3391 142 VSVIDAATN-KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR---GS--------VGSLVGVGT- 207 (381)
T ss_pred EEEEeCCCC-eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec---cc--------cccccccCC-
Confidence 888888876 444333322233 8899999999877775 68999999974321000 00 000112222
Q ss_pred CEEEEEEecCCCEEEEEeCC---CeEEEEEcCCCeeecc-CCCCCcceeeeecccCCCCceEEc
Q 008363 337 AIWSVQVSRLTGMVAYCSAD---GTVHRFQLTAKAVEKD-HSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~D---g~v~iwd~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
.-..+.++|++.++...... +.+...|..++..... ...... ...-..+.+++..+.+.
T Consensus 208 ~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 208 GPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred CCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEE
Confidence 33678999999755544433 5899999987765543 122221 11222566777766654
No 374
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.82 E-value=0.53 Score=50.94 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=68.8
Q ss_pred EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEE
Q 008363 128 LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVAL 207 (568)
Q Consensus 128 ~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i 207 (568)
-+....+.|||...+.....- . ....+.| ..++|...|+|+.|++.+..+.|.+
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~------------------------~-f~~~~~I-~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEE------------------------S-FSEDDPI-RDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEee------------------------e-ecCCCce-eeceeeecCCCCEEEEEEcCcEEEE
Confidence 334456899999886533221 0 2345677 8999999999999999999999999
Q ss_pred EEccCCC---CCCCCceeEE--eeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECC
Q 008363 208 WKFVASD---SSIDSRPLLC--FSADT-LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIR 264 (568)
Q Consensus 208 wd~~~~~---~~~~~~~~~~--~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~ 264 (568)
+.-..-. ......+++. +..|+ .+|.+..|.++| .|+.|+...+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-------~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG-------TLVVGSGNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC-------eEEEEeCCEEEEECCC
Confidence 8642110 0001223332 34455 679999999998 6666666568888743
No 375
>PHA02713 hypothetical protein; Provisional
Probab=94.81 E-value=1.1 Score=48.75 Aligned_cols=152 Identities=7% Similarity=-0.011 Sum_probs=77.3
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----------
Q 008363 192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---------- 256 (568)
Q Consensus 192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---------- 256 (568)
+|.+.+.|+.++ ++..||..+..+ ..+..+.........+++ ++ .+++.||.+
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W----~~~~~mp~~r~~~~~~~~--~g------~IYviGG~~~~~~~~~~~~ 418 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKW----KMLPDMPIALSSYGMCVL--DQ------YIYIIGGRTEHIDYTSVHH 418 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeE----EECCCCCcccccccEEEE--CC------EEEEEeCCCcccccccccc
Confidence 567888888764 478899887644 222121111111112222 34 677777643
Q ss_pred -------------C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEccccccCCCC
Q 008363 257 -------------G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 257 -------------~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~~~~~~~~~ 315 (568)
. +..||..+... .+..+...... .+++. -+++..+.||.+ ..|..||....
T Consensus 419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~------ 490 (557)
T PHA02713 419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTY------ 490 (557)
T ss_pred cccccccccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCC------
Confidence 2 66788775421 11111111111 12222 236666667654 23567877430
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCeeecc
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKAVEKD 372 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~~~ 372 (568)
.+. ..+..+.........+.+ ++.+.++||.|| .+-.||..+.++..-
T Consensus 491 -~~W------~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 491 -NGW------ELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHI 540 (557)
T ss_pred -CCe------eEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccch
Confidence 111 112233322223233333 678889999888 788888877776654
No 376
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.66 E-value=4.5 Score=39.06 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=86.6
Q ss_pred eEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.+.+++ +++..+|... .++.-.||-..... .....+.+ ..+..-.|++++ .+.+....+. .++
T Consensus 27 ~s~AvS--~dg~~~A~v~~~~~~~~L~~~~~~~-----~~~~~~~g--~~l~~PS~d~~g------~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 27 TSPAVS--PDGSRVAAVSEGDGGRSLYVGPAGG-----PVRPVLTG--GSLTRPSWDPDG------WVWTVDDGSGGVRV 91 (253)
T ss_pred cceEEC--CCCCeEEEEEEcCCCCEEEEEcCCC-----cceeeccC--CccccccccCCC------CEEEEEcCCCceEE
Confidence 778888 8888776655 23333444433331 12222222 367788999998 5655555444 666
Q ss_pred EE-CCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 261 WD-IRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 261 wD-~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
+. ...+......+. .-.+.|..+.+||||..++... .++.|++--+.... .|.+. .-..++......
T Consensus 92 ~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~-----~g~~~--~l~~~~~~~~~~ 164 (253)
T PF10647_consen 92 VRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDG-----DGVPR--RLTGPRRVAPPL 164 (253)
T ss_pred EEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCC-----CCCcc--eeccceEecccc
Confidence 63 233321111121 1122799999999999888765 35778777664322 12110 000222333344
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCe
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
...+..+.|.+++.+++.+...+.
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCCCC
Confidence 568899999999887777665443
No 377
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.60 E-value=5.9 Score=40.20 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=81.7
Q ss_pred EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---CE--EEEECCCCCcceeeeCCCCC-
Q 008363 205 VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---GL--KFWDIRDPFRPLWDIHPAPK- 278 (568)
Q Consensus 205 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---~v--~lwD~~~~~~~~~~~~~h~~- 278 (568)
|...|+.++ +....+ .-...+.-+.|+|.. |.+|+-|.++ .| |||-++.....+..+..|..
T Consensus 170 i~~idl~tG------~~~~v~-~~~~wlgH~~fsP~d-----p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~ 237 (386)
T PF14583_consen 170 IFTIDLKTG------ERKVVF-EDTDWLGHVQFSPTD-----PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG 237 (386)
T ss_dssp EEEEETTT--------EEEEE-EESS-EEEEEEETTE-----EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT
T ss_pred EEEEECCCC------ceeEEE-ecCccccCcccCCCC-----CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC
Confidence 445566654 333333 335678889999997 6888888775 23 78877765555555544432
Q ss_pred -CeEEEEEcCCCCEEEEEeC-----CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363 279 -FIYGLDWLPDPGCVILSFD-----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 279 -~i~~l~~sp~~~~l~s~~~-----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s 352 (568)
.+..=-|.|||..|.--+. +..|.-+|+.+ ++. ..+... .....+--+++|.+++-
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t--------~~~------~~~~~~----p~~~H~~ss~Dg~L~vG 299 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDT--------GER------RRLMEM----PWCSHFMSSPDGKLFVG 299 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT----------E------EEEEEE-----SEEEEEE-TTSSEEEE
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCC--------CCc------eEEEeC----CceeeeEEcCCCCEEEe
Confidence 2345569999988776322 34566666633 322 111111 13345556678887766
Q ss_pred EeCCC----------------eEEEEEcCCCeeecc---------CCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363 353 CSADG----------------TVHRFQLTAKAVEKD---------HSRNRPMHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 353 ~s~Dg----------------~v~iwd~~~~~~~~~---------~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
=+.|. .|+++++..+....- ....+...-.-.++++|+..+...+.....|
T Consensus 300 DG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~ 375 (386)
T PF14583_consen 300 DGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPP 375 (386)
T ss_dssp EE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-
T ss_pred cCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCc
Confidence 55542 566778876553311 0011111112235889999888776655444
No 378
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.57 E-value=1.8 Score=40.79 Aligned_cols=100 Identities=13% Similarity=0.147 Sum_probs=67.7
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceee
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~ 272 (568)
.+++.|+..+.+.--|..++.. .-...+ ...|.+-+.- -+ ++++.|...+ +++.+..++ ...+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~----~We~il---g~RiE~sa~v-vg------dfVV~GCy~g~lYfl~~~tG-s~~w~ 88 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNL----IWEAIL---GVRIECSAIV-VG------DFVVLGCYSGGLYFLCVKTG-SQIWN 88 (354)
T ss_pred eEEEEecCCceEEEecCCCCcE----Eeehhh---CceeeeeeEE-EC------CEEEEEEccCcEEEEEecch-hheee
Confidence 5788899999999999887732 111122 2333333333 24 5788888887 999999988 55544
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 273 IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 273 ~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
+.....--......+++..|.+|+.|++.+..|.+.
T Consensus 89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred eeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 432222113455678899999999999999999854
No 379
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.54 E-value=7.6 Score=41.58 Aligned_cols=26 Identities=8% Similarity=-0.078 Sum_probs=21.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAI 148 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l 148 (568)
..++.++.+|.|.-+|..+++.+-..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeee
Confidence 46777888999999999998877554
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.48 E-value=0.14 Score=34.89 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=28.4
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
...|..++|+|...+||.++.||.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3568999999999999999999999999984
No 381
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.45 E-value=0.059 Score=58.61 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred eEEEEccC-CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE-----------EccCCCCCCCCcEE
Q 008363 183 LTMEWSTS-PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS-----------WAPAESDSDSANVI 250 (568)
Q Consensus 183 ~~v~~s~~-~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~-----------~~p~~~~~~~~~~l 250 (568)
.-|.|+|. ++.-++..+-.+++|++..+... ....|.+|...+..++ .+|+| ..|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra-------~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDG------tv~ 250 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRA-------LRSLFRSHSQRVTDMAFFAEGVLKLASLSPDG------TVF 250 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechH-------HHHHHHhcCCCcccHHHHhhchhhheeeCCCC------cEE
Confidence 44666654 33356777778899998887754 1234556777666554 47888 899
Q ss_pred EEEcCCC-EEEEECCCCC----cceeeeCCCCC-CeEEEEEcCC---------CCEEEEEeC-CCcEEEEEc
Q 008363 251 LTAGHGG-LKFWDIRDPF----RPLWDIHPAPK-FIYGLDWLPD---------PGCVILSFD-DGAMRIVSL 306 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~----~~~~~~~~h~~-~i~~l~~sp~---------~~~l~s~~~-dg~I~lwd~ 306 (568)
|.+..|| +++|-+.-.. +++.....|.+ +-.|..|+.+ ..+++++++ +..+++|..
T Consensus 251 a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~ 322 (1283)
T KOG1916|consen 251 AWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE 322 (1283)
T ss_pred EEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence 9999998 8888664221 55666667763 2223223321 245566655 566888876
No 382
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.39 E-value=5.3 Score=38.92 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=87.9
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL 270 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~ 270 (568)
..++.|+.|+.+| |.++++... ....... +...|..+...+.- +.|+.-++..++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~-----~~~~~i~--~~~~I~ql~vl~~~------~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDP-----SKPTRIL--KLSSITQLSVLPEL------NLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCC-----ccceeEe--ecceEEEEEEeccc------CEEEEEcCCccEEEEchhhcccc
Confidence 3568999999998 899998322 1333332 23349999999987 67777666449999987653211
Q ss_pred ee-------------eCCCCCCeEEEE--EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363 271 WD-------------IHPAPKFIYGLD--WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS 335 (568)
Q Consensus 271 ~~-------------~~~h~~~i~~l~--~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~ 335 (568)
.. .......+..++ -.+.+...++......|.+|...... .... ..+..+. -.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~------~~f~-----~~~ke~~-lp 138 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPR------NSFS-----KLLKEIS-LP 138 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCc------cccc-----ceeEEEE-cC
Confidence 00 111223344444 12344444555556689999885421 1100 1123433 33
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..+.+++|. +..|+.|..+ ...+.|+.++..
T Consensus 139 ~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 139 DPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred CCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 677889997 5667777655 477788875543
No 383
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.25 E-value=2.5 Score=46.37 Aligned_cols=108 Identities=13% Similarity=0.116 Sum_probs=68.7
Q ss_pred CCCEEEEEeCCCeEEEEEccC-------C-------CCCCCCceeEEeeCCCCCeeEEEEc--cCCCCCCCCcEEEEEcC
Q 008363 192 PHDYLLAGCHDGTVALWKFVA-------S-------DSSIDSRPLLCFSADTLPIRAVSWA--PAESDSDSANVILTAGH 255 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~-------~-------~~~~~~~~~~~~~~h~~~V~~v~~~--p~~~~~~~~~~las~s~ 255 (568)
....|+.+..||.|.+|.+.. . ......+|...+.. ...+++++++ ... ++||.++.
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~------rlIAVSsN 185 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKS------RLIAVSSN 185 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcc------eEEEEecC
Confidence 557999999999999997621 0 00011234444433 3468999998 555 78888877
Q ss_pred CC-EEEEECCC--CCcceeeeCCCCCCeEEEEEcCCC---C---EEEEEeCCCcEEEEEc
Q 008363 256 GG-LKFWDIRD--PFRPLWDIHPAPKFIYGLDWLPDP---G---CVILSFDDGAMRIVSL 306 (568)
Q Consensus 256 d~-v~lwD~~~--~~~~~~~~~~h~~~i~~l~~sp~~---~---~l~s~~~dg~I~lwd~ 306 (568)
.. |.||-... .......-..|...|-+|+|.++. . .|++++-.|.+-+|++
T Consensus 186 s~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 186 SQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred CceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 76 77765443 211111122355668899998754 2 6667777999999888
No 384
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.18 E-value=0.17 Score=34.57 Aligned_cols=30 Identities=23% Similarity=0.525 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 277 PKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 277 ~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
...|.+++|+|....|+.++.+|.|.+|.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 456899999999999999999999999998
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.77 E-value=3 Score=40.05 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=45.0
Q ss_pred EEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 236 SWAPAESDSDSANVILTAGHG-----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
.|+|+| .+|...-.| | |-|||.+.....+..+..|.-.-..+.|.+||+.|+.+.
T Consensus 120 vfs~dG------~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDG------RLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCC------cEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 589999 677665432 5 999999988788888888887778999999999998864
No 386
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.64 E-value=8.1 Score=38.22 Aligned_cols=153 Identities=19% Similarity=0.237 Sum_probs=73.6
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
...+ ..+.-+ ++|.+++++..-....-||--...+ .+. -..-...|.+|.|.|++ .+.+.+ .++
T Consensus 144 ~gs~-~~~~r~--~dG~~vavs~~G~~~~s~~~G~~~w----~~~--~r~~~~riq~~gf~~~~------~lw~~~-~Gg 207 (302)
T PF14870_consen 144 SGSI-NDITRS--SDGRYVAVSSRGNFYSSWDPGQTTW----QPH--NRNSSRRIQSMGFSPDG------NLWMLA-RGG 207 (302)
T ss_dssp ---E-EEEEE---TTS-EEEEETTSSEEEEE-TT-SS-----EEE--E--SSS-EEEEEE-TTS-------EEEEE-TTT
T ss_pred ccee-EeEEEC--CCCcEEEEECcccEEEEecCCCccc----eEE--ccCccceehhceecCCC------CEEEEe-CCc
Confidence 3455 666655 8898888876655566777553311 222 22346789999999998 666655 666
Q ss_pred -EEEEECCCCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 258 -LKFWDIRDPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 258 -v~lwD~~~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
|++=+..... .++..+....-.+..++|.+++...++|+ .|.+. ...+ .|+-- +......
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~D--------gGktW-----~~~~~~~ 272 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTD--------GGKTW-----QKDRVGE 272 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESS--------TTSS------EE-GGGT
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCC--------CCccc-----eECcccc
Confidence 8887722211 11111212223378999999877666555 45442 2221 24332 1111111
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
.-...++.|.|.... .-+..+.+|.|.-|
T Consensus 273 ~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 223457888887654 44555668887665
No 387
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.40 E-value=11 Score=39.02 Aligned_cols=45 Identities=16% Similarity=-0.048 Sum_probs=35.6
Q ss_pred eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
...+......+.+++.+|.+++.|+...=|.|.++|+.++.+.+.
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm 344 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM 344 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh
Confidence 344555566788999999999888888889999999987765544
No 388
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.09 E-value=4.6 Score=41.45 Aligned_cols=103 Identities=13% Similarity=0.084 Sum_probs=57.0
Q ss_pred ceEEEEccCCCCCEEEEEe-----------CCC-eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 182 PLTMEWSTSPPHDYLLAGC-----------HDG-TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs-----------~Dg-~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
|..|+|. ++|+++++-. ..+ .|.+++-..+.- .......|.........|+|.+++ +
T Consensus 16 P~~ia~d--~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG--~~d~~~vfa~~l~~p~Gi~~~~~G-------l 84 (367)
T TIGR02604 16 PIAVCFD--ERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG--KYDKSNVFAEELSMVTGLAVAVGG-------V 84 (367)
T ss_pred CceeeEC--CCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC--CcceeEEeecCCCCccceeEecCC-------E
Confidence 4788988 8887776643 223 677776432211 112233443334456889998875 5
Q ss_pred EEEEcCCCEE-EEECCCCC------cce-eeeCC----CCCCeEEEEEcCCCCEEEEEe
Q 008363 250 ILTAGHGGLK-FWDIRDPF------RPL-WDIHP----APKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 250 las~s~d~v~-lwD~~~~~------~~~-~~~~~----h~~~i~~l~~sp~~~~l~s~~ 296 (568)
+++ ....|. +.|..... ..+ ..+.. +......++|.|||.+.++-+
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 554 344544 44554211 112 12222 234467899999998766555
No 389
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.07 E-value=1.4 Score=49.75 Aligned_cols=143 Identities=9% Similarity=0.019 Sum_probs=83.3
Q ss_pred CCCCEE--EEEeCCCeEEEEEccCCCCCC--CCceeEE---eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 191 PPHDYL--LAGCHDGTVALWKFVASDSSI--DSRPLLC---FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 191 ~~g~~l--~sgs~Dg~I~iwd~~~~~~~~--~~~~~~~---~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
+|+... +..+.+-.|..||+..-.... ...++.. .........++.|+|.- +..+|.+..|. |++.-
T Consensus 110 ~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~v-----p~n~av~l~dlsl~V~~ 184 (1405)
T KOG3630|consen 110 HDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLV-----PLNSAVDLSDLSLRVKS 184 (1405)
T ss_pred cCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCc-----cchhhhhccccchhhhh
Confidence 354433 333444478899987432211 0112111 11123446788999986 45667777777 88877
Q ss_pred CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363 263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ 342 (568)
Q Consensus 263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~ 342 (568)
+......+..+ ......++++|+|.|..+++|-..|++.-|-.. ++... .+.+.-.+. ...|.+|+
T Consensus 185 ~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~---------leik~--~ip~Pp~~e--~yrvl~v~ 250 (1405)
T KOG3630|consen 185 TKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS---------LEIKS--EIPEPPVEE--NYRVLSVT 250 (1405)
T ss_pred hhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc---------cceee--cccCCCcCC--CcceeEEE
Confidence 76443333332 334567999999999999999999999888652 21110 000111111 47899999
Q ss_pred EecCCCEEEE
Q 008363 343 VSRLTGMVAY 352 (568)
Q Consensus 343 ~sp~~~~l~s 352 (568)
|-....+|++
T Consensus 251 Wl~t~eflvv 260 (1405)
T KOG3630|consen 251 WLSTQEFLVV 260 (1405)
T ss_pred EecceeEEEE
Confidence 9876555544
No 390
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=93.06 E-value=7.5 Score=40.52 Aligned_cols=109 Identities=15% Similarity=0.189 Sum_probs=65.5
Q ss_pred EccCCCCCEEEEE-eCCC----eEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363 187 WSTSPPHDYLLAG-CHDG----TVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHG---- 256 (568)
Q Consensus 187 ~s~~~~g~~l~sg-s~Dg----~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---- 256 (568)
|.++|+|++||.+ +..| +|+++|+.++ +.+. .+.. .....+.|.+++. .++.+...+
T Consensus 129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg------~~l~d~i~~--~~~~~~~W~~d~~-----~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG------KFLPDGIEN--PKFSSVSWSDDGK-----GFFYTRFDEDQRT 195 (414)
T ss_dssp EEETTTSSEEEEEEEETTSSEEEEEEEETTTT------EEEEEEEEE--EESEEEEECTTSS-----EEEEEECSTTTSS
T ss_pred eeECCCCCEEEEEecCCCCceEEEEEEECCCC------cCcCCcccc--cccceEEEeCCCC-----EEEEEEeCccccc
Confidence 3344899988865 3334 5999999977 4433 2221 1123399999972 445554222
Q ss_pred -----C--EEEEECCCCCcc-eeeeCCCCC-C-eEEEEEcCCCCEEEEEeC---C-CcEEEEEccc
Q 008363 257 -----G--LKFWDIRDPFRP-LWDIHPAPK-F-IYGLDWLPDPGCVILSFD---D-GAMRIVSLLK 308 (568)
Q Consensus 257 -----~--v~lwD~~~~~~~-~~~~~~h~~-~-i~~l~~sp~~~~l~s~~~---d-g~I~lwd~~~ 308 (568)
. |++|.+.+.... ...+..... . ...+..++|+++|+.... + ..|++.|+..
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 3 899999877433 233433222 2 568999999999887533 3 4577778754
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.53 E-value=11 Score=36.60 Aligned_cols=160 Identities=16% Similarity=0.229 Sum_probs=99.0
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+.++.|+|+. +.|.+......-.||=...|+.++++.. .+... +
T Consensus 88 vS~LTynp~~----------rtLFav~n~p~~iVElt~~GdlirtiPL------------------------~g~~D--p 131 (316)
T COG3204 88 VSSLTYNPDT----------RTLFAVTNKPAAIVELTKEGDLIRTIPL------------------------TGFSD--P 131 (316)
T ss_pred ccceeeCCCc----------ceEEEecCCCceEEEEecCCceEEEecc------------------------cccCC--h
Confidence 5599999999 6777777777777776667888877622 22111 2
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCc----eeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSR----PLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~----~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
-+++|. .+|.+.++-=.++.+.++.+.......... ++......+...-.++|.|.. ..|..+-+..
T Consensus 132 E~Ieyi--g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~------~~l~~aKEr~P 203 (316)
T COG3204 132 ETIEYI--GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD------HRLFVAKERNP 203 (316)
T ss_pred hHeEEe--cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC------ceEEEEEccCC
Confidence 567877 666666776778888888876552211111 111222225668899999998 6666666655
Q ss_pred EEEEECCCCCcce--eeeCCC-------CCCeEEEEEcCC-CCEEEEEeCCCcEEEEEc
Q 008363 258 LKFWDIRDPFRPL--WDIHPA-------PKFIYGLDWLPD-PGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 258 v~lwD~~~~~~~~--~~~~~h-------~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~ 306 (568)
+.|+-+......+ .....+ -..|.++.|++. +..|+.+.+++.|.-.|+
T Consensus 204 ~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 204 IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec
Confidence 6666554332111 111111 123567888874 556666677888887777
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.51 E-value=7.8 Score=38.53 Aligned_cols=106 Identities=15% Similarity=0.178 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCC-ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-
Q 008363 182 PLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDS-RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G- 257 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~- 257 (568)
+..|+|+ |+++.|..+.. .+.|.-|++......... .....+..+.+..-.++...+| ++.+++..+ +
T Consensus 165 ~NGla~S--pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG------~lw~~a~~~g~~ 236 (307)
T COG3386 165 PNGLAFS--PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG------NLWVAAVWGGGR 236 (307)
T ss_pred cCceEEC--CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC------CEEEecccCCce
Confidence 4889999 88877666654 478888887632111111 2223333455667788888888 677555444 3
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEc-CCCCEEEEEeC
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWL-PDPGCVILSFD 297 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~s-p~~~~l~s~~~ 297 (568)
|.+|+.. + +.+..+.-....+++++|- |+.+.|++.+.
T Consensus 237 v~~~~pd-G-~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 237 VVRFNPD-G-KLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EEEECCC-C-cEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9999988 5 5554444333567777774 45566665544
No 393
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.39 E-value=11 Score=36.53 Aligned_cols=145 Identities=15% Similarity=0.120 Sum_probs=81.6
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCC-ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-ccee
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDS-RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-RPLW 271 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~~~~ 271 (568)
..|+++. ..+|.+|....... .. ...+.+. -...+.+++|.. +.|+.|..++..+.|+.++. ..+.
T Consensus 106 ~~L~va~-kk~i~i~~~~~~~~--~f~~~~ke~~-lp~~~~~i~~~~--------~~i~v~~~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 106 RRLCVAV-KKKILIYEWNDPRN--SFSKLLKEIS-LPDPPSSIAFLG--------NKICVGTSKGFYLIDLNTGSPSELL 173 (275)
T ss_pred eEEEEEE-CCEEEEEEEECCcc--cccceeEEEE-cCCCcEEEEEeC--------CEEEEEeCCceEEEecCCCCceEEe
Confidence 3444444 55999999876311 11 3444443 347789999994 46777777778899998652 2222
Q ss_pred eeCC----------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 272 DIHP----------APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 272 ~~~~----------h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
.... ...++..+.. +++.+|++ .|..-.+.|. .|++.. -..+... ..+.++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~--~~~~g~fv~~---------~G~~~r------~~~i~W~-~~p~~~ 234 (275)
T PF00780_consen 174 DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC--YDNIGVFVNK---------NGEPSR------KSTIQWS-SAPQSV 234 (275)
T ss_pred CccCCcchhhhcccCCCceEEEEe-CCceEEEE--ecceEEEEcC---------CCCcCc------ccEEEcC-CchhEE
Confidence 1111 1122333333 34555554 2344444554 354421 1233332 244566
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
++ ...||+..+. +.|-||++.++.+.+.
T Consensus 235 ~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 235 AY--SSPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred EE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence 66 3467777776 4599999999877665
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.10 E-value=10 Score=41.72 Aligned_cols=153 Identities=13% Similarity=0.181 Sum_probs=93.0
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee----------------CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS----------------ADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~----------------~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
..+|++|. .+.|.||++..-......++...+. .-...|+-|....-+ +..+|+.|.+|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg----~~EVLl~c~Dd 123 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLG----GEEVLLLCTDD 123 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccC----CeeEEEEEecC
Confidence 55777766 6799999986432211111111110 011225555544444 35789999999
Q ss_pred C-EEEEECCCC-------------------CcceeeeCCCCCCeEEEEEc--CCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 257 G-LKFWDIRDP-------------------FRPLWDIHPAPKFIYGLDWL--PDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 257 ~-v~lwD~~~~-------------------~~~~~~~~~h~~~i~~l~~s--p~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
| |.+|.+..- ..|...+. ....+++|+++ ...++||+++....|.||-.....
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~---- 198 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVD---- 198 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccc----
Confidence 9 999966211 01223332 24468899998 888888888888888888664321
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCC---C---EEEEEeCCCeEEEEEc
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---G---MVAYCSADGTVHRFQL 364 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~---~l~s~s~Dg~v~iwd~ 364 (568)
.+... ..-..|...|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 199 --~r~~~-------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 199 --ERFYH-------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred --ccccc-------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11110 0011255678889998764 2 7888999999999888
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.98 E-value=6.3 Score=40.51 Aligned_cols=152 Identities=16% Similarity=0.227 Sum_probs=71.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeC--------------------CCcEEEEECCCCceeeEEeccCCccCCCCce
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG--------------------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRF 161 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~--------------------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~ 161 (568)
.-+++-|.|.. +.++|... -.+|.+||+.+.+.++++.
T Consensus 182 ~gYDfw~qpr~----------nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id------------ 239 (461)
T PF05694_consen 182 FGYDFWYQPRH----------NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID------------ 239 (461)
T ss_dssp ----EEEETTT----------TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE------------
T ss_pred CCCCeEEcCCC----------CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe------------
Confidence 34566777766 67777642 3589999999988887762
Q ss_pred EEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEc-cCCCCCCCCceeEEeeC------------
Q 008363 162 VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKF-VASDSSIDSRPLLCFSA------------ 227 (568)
Q Consensus 162 v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~-~~~~~~~~~~~~~~~~~------------ 227 (568)
.+..+.+|+.|.|...|+..+=++|+ -..+|..|-- ..+.+ ..+.+..+..
T Consensus 240 -------------Lg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W--~a~kVi~ip~~~v~~~~lp~ml 304 (461)
T PF05694_consen 240 -------------LGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEW--AAEKVIDIPAKKVEGWILPEML 304 (461)
T ss_dssp -------------S-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEE--EEEEEEEE--EE--SS---GGG
T ss_pred -------------cCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCe--eeeEEEECCCcccCcccccccc
Confidence 22223334777776556655444333 3344444433 32221 1111112211
Q ss_pred -----CCCCeeEEEEccCCCCCCCCcEEE-EEcCCC-EEEEECCCCCcceeeeC---C---------------CCCCeEE
Q 008363 228 -----DTLPIRAVSWAPAESDSDSANVIL-TAGHGG-LKFWDIRDPFRPLWDIH---P---------------APKFIYG 282 (568)
Q Consensus 228 -----h~~~V~~v~~~p~~~~~~~~~~la-s~s~d~-v~lwD~~~~~~~~~~~~---~---------------h~~~i~~ 282 (568)
-..-|++|..+.+. ++|. ++-..| |+.||+.++..+...-+ + -.+...-
T Consensus 305 ~~~~~~P~LitDI~iSlDD------rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqM 378 (461)
T PF05694_consen 305 KPFGAVPPLITDILISLDD------RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQM 378 (461)
T ss_dssp GGG-EE------EEE-TTS-------EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----
T ss_pred cccccCCCceEeEEEccCC------CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCe
Confidence 02458999999998 5554 455567 99999999875553321 0 1122356
Q ss_pred EEEcCCCCEEEEEe
Q 008363 283 LDWLPDPGCVILSF 296 (568)
Q Consensus 283 l~~sp~~~~l~s~~ 296 (568)
|..|-||+.|+.++
T Consensus 379 vqlS~DGkRlYvTn 392 (461)
T PF05694_consen 379 VQLSLDGKRLYVTN 392 (461)
T ss_dssp EEE-TTSSEEEEE-
T ss_pred EEEccCCeEEEEEe
Confidence 77788888877764
No 396
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.70 E-value=10 Score=41.35 Aligned_cols=150 Identities=13% Similarity=0.080 Sum_probs=78.5
Q ss_pred CCCEEEEEeCCCe-----EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE-ccCCCCCCCCcEEEEEcCC------C-E
Q 008363 192 PHDYLLAGCHDGT-----VALWKFVASDSSIDSRPLLCFSADTLPIRAVSW-APAESDSDSANVILTAGHG------G-L 258 (568)
Q Consensus 192 ~g~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~-~p~~~~~~~~~~las~s~d------~-v 258 (568)
+|.+.|+|+.||. |-.||..+..+ ..+..+.. .....+. .-.+ .+++.||.+ . +
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W----~~va~m~~---~r~~~gv~~~~g------~iYi~GG~~~~~~~l~sv 446 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKW----TPVAPMLT---RRSGHGVAVLGG------KLYIIGGGDGSSNCLNSV 446 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcc----cccCCCCc---ceeeeEEEEECC------EEEEEcCcCCCccccceE
Confidence 5788999999975 77788877755 22222211 1122211 2233 677777754 2 6
Q ss_pred EEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc-----EEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 259 KFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA-----MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 259 ~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~-----I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
..||..+... .+..+..-.... .++.. ++...+.||.|+. |..||... .+. ..+..+.
T Consensus 447 e~YDP~t~~W~~~~~M~~~R~~~-g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~--------~~W------~~v~~m~ 510 (571)
T KOG4441|consen 447 ECYDPETNTWTLIAPMNTRRSGF-GVAVL-NGKIYVVGGFDGTSALSSVERYDPET--------NQW------TMVAPMT 510 (571)
T ss_pred EEEcCCCCceeecCCcccccccc-eEEEE-CCEEEEECCccCCCccceEEEEcCCC--------Cce------eEcccCc
Confidence 7788876641 112221111111 23322 4667777777763 66677743 111 1112222
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADG-----TVHRFQLTAKAVEKD 372 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~ 372 (568)
.....+..+.+ ++...++|+.|| +|-.||..+.++...
T Consensus 511 ~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 511 SPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 23333333333 467788888775 566777766666544
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.56 E-value=7.1 Score=43.59 Aligned_cols=83 Identities=16% Similarity=0.135 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEccc-cccCC-CCCCCCccCccccceEEE--------ecCCCCEEEEEEecC-
Q 008363 278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLLK-AAYDV-PATGKPFAGTKQQGLHLV--------NCSSFAIWSVQVSRL- 346 (568)
Q Consensus 278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~-~~~~~-~~~g~~~~~~~~~~l~~~--------~~h~~~V~~l~~sp~- 346 (568)
-.|..|.++|+|++|+..|..|.+ |..+.. ...+. ...|+.. ...+++ ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~-----i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKE-----INCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcc-----eeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 357899999999999999886644 444422 11100 0011110 111121 133457899999998
Q ss_pred --CCEEEEEeCCCeEEEEEcCC
Q 008363 347 --TGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 347 --~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+..|+.-..|+++++||+..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCC
Confidence 48999999999999999964
No 398
>PHA02713 hypothetical protein; Provisional
Probab=91.03 E-value=24 Score=38.51 Aligned_cols=54 Identities=7% Similarity=0.110 Sum_probs=32.4
Q ss_pred CCCEEEEEeCC------CeEEEEEcCC-CeeeccCCCCCcceeeeecccCCCCceEEcccCC
Q 008363 346 LTGMVAYCSAD------GTVHRFQLTA-KAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLD 400 (568)
Q Consensus 346 ~~~~l~s~s~D------g~v~iwd~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~ 400 (568)
++.+.+.||.+ ..+..||..+ ..+.... .-+.+...++....++...++|...+
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~~~~iyv~Gg~~~ 523 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILHDNTIMMLHCYES 523 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEECCEEEEEeeecc
Confidence 46666777654 2467899887 5666542 33344555566666776666665433
No 399
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.29 E-value=9.2 Score=42.71 Aligned_cols=74 Identities=12% Similarity=0.302 Sum_probs=53.0
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC----------Ccce--eee--------CCCCCCeEEEEEcCC-
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP----------FRPL--WDI--------HPAPKFIYGLDWLPD- 288 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~----------~~~~--~~~--------~~h~~~i~~l~~sp~- 288 (568)
-.|..|.++|+| .++|-.|..+|.|-.+... ...+ .++ ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~~g------~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 85 FEVHQISLNPTG------SLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eeEEEEEECCCC------CEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCC
Confidence 358899999999 8898888888666555321 0111 111 133457889999996
Q ss_pred --CCEEEEEeCCCcEEEEEcccc
Q 008363 289 --PGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 289 --~~~l~s~~~dg~I~lwd~~~~ 309 (568)
+.+|++-..|+++|+||+.+.
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCCC
Confidence 588999999999999999653
No 400
>PHA03098 kelch-like protein; Provisional
Probab=90.20 E-value=22 Score=38.50 Aligned_cols=27 Identities=0% Similarity=-0.096 Sum_probs=18.7
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 346 LTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 346 ~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
++.+++.||.+ ..|.+||..+..+...
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 56777777654 4688888887766544
No 401
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.19 E-value=1.3 Score=29.33 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.7
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP 266 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~ 266 (568)
+.|+++.|+|... ...+|+-+-.-+ |.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~---~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPG---GNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCC---cccEEEEEccCCeEEEEEcccC
Confidence 4689999998650 124677666666 999999964
No 402
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.16 E-value=0.051 Score=55.28 Aligned_cols=144 Identities=16% Similarity=0.284 Sum_probs=95.1
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
....|- +.+.-++.++.+..|..||-... ..... ...+...+++|...+ +..++.+-..+ +.+|
T Consensus 38 i~~~w~--~e~~nlavaca~tiv~~YD~agq-------~~le~-n~tg~aldm~wDkeg-----dvlavlAek~~piylw 102 (615)
T KOG2247|consen 38 IIHRWR--PEGHNLAVACANTIVIYYDKAGQ-------VILEL-NPTGKALDMAWDKEG-----DVLAVLAEKTGPIYLW 102 (615)
T ss_pred ceeeEe--cCCCceehhhhhhHHHhhhhhcc-------eeccc-CCchhHhhhhhcccc-----chhhhhhhcCCCeeec
Confidence 677888 55666888888999999996532 22222 234556778888877 23334444445 9999
Q ss_pred ECCCCCcceeeeC-CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE
Q 008363 262 DIRDPFRPLWDIH-PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW 339 (568)
Q Consensus 262 D~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~ 339 (568)
|+.+.......+. .|.. .-+.|++....++.+...|.+.|++.+.. +. ....| |...++
T Consensus 103 d~n~eytqqLE~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgts--------R~---------iiv~Gkh~RRgt 163 (615)
T KOG2247|consen 103 DVNSEYTQQLESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTS--------RR---------IIVMGKHQRRGT 163 (615)
T ss_pred hhhhhhHHHHhccCcchH--HHHhhccCCccccccccccceEEEeccch--------hh---------hhhhccccccee
Confidence 9987653332332 2222 33889999999999999999999998431 11 12234 888999
Q ss_pred EEEEecCCCEEEEEeCCCeEEE
Q 008363 340 SVQVSRLTGMVAYCSADGTVHR 361 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~i 361 (568)
+++|.+.+ +.+.++.|..+-+
T Consensus 164 q~av~lEd-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 164 QIAVTLED-YVILCDCDNTLSV 184 (615)
T ss_pred EEEecccc-eeeecCcHHHHHH
Confidence 99998854 4556666655443
No 403
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=90.16 E-value=0.69 Score=50.76 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=91.7
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce---eEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP---LLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~---~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.|..+.| ..++|... +...++ -.-|.+.||++.--. ....+ +.........+.-|.|+|--. +.-++.
T Consensus 129 kgf~G~v-~dl~fah~-~~pk~~--~~vg~lfVy~vd~l~--G~iq~~l~v~~~~p~gs~~~~V~wcp~~~---~~~~ic 199 (1283)
T KOG1916|consen 129 KGFPGGV-GDLQFAHT-KCPKGR--RLVGELFVYDVDVLQ--GEIQPQLEVTPITPYGSDPQLVSWCPIAV---NKVYIC 199 (1283)
T ss_pred hcCCCCc-cccccccc-CChHHH--HHhhhhheeehHhhc--cccccceEEeecCcCCCCcceeeeccccc---ccceee
Confidence 4566666 66666321 111222 223678899986311 11222 222233345567778877541 113444
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE-----------EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD-----------WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~-----------~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
.+-.++ |++.......+ ..+.+|...+..++ .+|||..++..+.||.+++|.+.- +|+.
T Consensus 200 ~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi-------~g~~ 270 (1283)
T KOG1916|consen 200 YGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYI-------TGKI 270 (1283)
T ss_pred eccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeee-------eccc
Confidence 444445 77766554323 23444655554433 689999999999999999998743 3443
Q ss_pred ccCccccceEEEecCC-CCEEEEEEecCC---------CEEEEEe-CCCeEEEEEcC
Q 008363 320 FAGTKQQGLHLVNCSS-FAIWSVQVSRLT---------GMVAYCS-ADGTVHRFQLT 365 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~-~~V~~l~~sp~~---------~~l~s~s-~Dg~v~iwd~~ 365 (568)
.. .|++.++.|. .+-.|..|+.+. .++++++ ....+++|.-.
T Consensus 271 ~~----rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 271 VH----RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred cH----hhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 32 5667777776 333332233221 2334443 44568888754
No 404
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.73 E-value=26 Score=36.25 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=61.3
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC-c---ceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF-R---PLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~-~---~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~ 302 (568)
...+.++.|.+++ .+++.+..+++ +|....+. . ....... -...++.+.|.+++. +++++..|.|.
T Consensus 280 ~~~l~~v~~~~dg------~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~ 351 (398)
T PLN00033 280 ARRIQNMGWRADG------GLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILL 351 (398)
T ss_pred ccceeeeeEcCCC------CEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEE
Confidence 4568899999998 67766644433 33333331 1 2222211 123488999998877 55556677776
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
...- .|+.. +....-..-...++.+.|.++++.+++ +.+|.|..|
T Consensus 352 ~s~D---------~G~tW-----~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 352 RSTD---------GGKSW-----KRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred EeCC---------CCcce-----eEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 5432 24332 111111223456788998776555544 457777655
No 405
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=89.61 E-value=21 Score=38.95 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=78.3
Q ss_pred eEEEEccCCCCCEEEEEeCC-C-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHD-G-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~D-g-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
.+++.. ++.+.++|+.| | ++..||.....+ ..+..+....... +++.. .| .++|.||.|
T Consensus 326 ~~~~~~---~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W----~~~a~M~~~R~~~-~v~~l-~g------~iYavGG~d 390 (571)
T KOG4441|consen 326 VGVAVL---NGKLYVVGGYDSGSDRLSSVERYDPRTNQW----TPVAPMNTKRSDF-GVAVL-DG------KLYAVGGFD 390 (571)
T ss_pred ccEEEE---CCEEEEEccccCCCcccceEEEecCCCCce----eccCCccCccccc-eeEEE-CC------EEEEEeccc
Confidence 444544 56789999999 3 577788877654 2222221111111 12212 23 688888876
Q ss_pred C------EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeCCC------cEEEEEccccccCCCCCCCCccCc
Q 008363 257 G------LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFDDG------AMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 257 ~------v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg------~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
+ |-.||..+..-. +..+.......-.+.+ +|...++||.++ ++..||..+ +...
T Consensus 391 g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t--------~~W~--- 457 (571)
T KOG4441|consen 391 GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPET--------NTWT--- 457 (571)
T ss_pred cccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCC--------Ccee---
Confidence 3 677888765321 1112111111222222 477777777554 456677643 2211
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCe-----EEEEEcCCCeeec
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGT-----VHRFQLTAKAVEK 371 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~-----v~iwd~~~~~~~~ 371 (568)
...++.+-..+.+ ++ .-++.+.+.||.|+. |..||..+..+..
T Consensus 458 ~~~~M~~~R~~~g----~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG----VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ecCCcccccccce----EE-EECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 0011111111111 22 225777888887763 6667776665544
No 406
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.32 E-value=6 Score=41.05 Aligned_cols=58 Identities=12% Similarity=0.159 Sum_probs=46.1
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
-++|.+|..| |++||--.- +.-..+.+....|..+..+.+|.+|++.+. .+|.+-|++
T Consensus 574 GyIa~as~kGDirLyDRig~-rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGK-RAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcc-hhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 3999999999 999997643 444456666788999999999999988775 567788874
No 407
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.18 E-value=14 Score=38.05 Aligned_cols=151 Identities=13% Similarity=0.200 Sum_probs=93.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
|.+..+.+...|.+.-|-+..... .-++..-....++|.+|.|+++. +.||.--.+. |.+++.......+
T Consensus 32 DaNkqlfavrSggatgvvvkgpnd---DVpiSfdm~d~G~I~SIkFSlDn------kilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPND---DVPISFDMDDKGEIKSIKFSLDN------KILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCC---CCCceeeecCCCceeEEEeccCc------ceEEEEecCceEEEEecCCCchhh
Confidence 444555555567777787764432 22333333456799999999998 8899888887 9999885432222
Q ss_pred ---eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363 271 ---WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 271 ---~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
.........|...+|+.. .-++.....| +-+|-+.... ..++..+.|...|.=..|.++.
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek---------------rslRlVks~~~nvnWy~yc~et 165 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK---------------RSLRLVKSHNLNVNWYMYCPET 165 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh---------------hhhhhhhhcccCccEEEEcccc
Confidence 222233445889999876 4455555444 6677663322 3345667788888888888887
Q ss_pred CEEEEEe--CCCeEEEEEcCCCe
Q 008363 348 GMVAYCS--ADGTVHRFQLTAKA 368 (568)
Q Consensus 348 ~~l~s~s--~Dg~v~iwd~~~~~ 368 (568)
..++.++ ...++.=+.+.++.
T Consensus 166 ~v~LL~t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 166 AVILLSTTVLENVLNPFHFRAGT 188 (657)
T ss_pred ceEeeeccccccccccEEEeece
Confidence 6554443 34455555555443
No 408
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=89.07 E-value=28 Score=35.44 Aligned_cols=155 Identities=9% Similarity=0.032 Sum_probs=71.4
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc----------------
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG---------------- 254 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s---------------- 254 (568)
++++.|+-......|+-.|+.+. +....+......+-...|..+. ....++..-
T Consensus 90 ~~~~~~~Yv~~~~~l~~vdL~T~------e~~~vy~~p~~~~g~gt~v~n~----d~t~~~g~e~~~~d~~~l~~~~~f~ 159 (386)
T PF14583_consen 90 PDDRALYYVKNGRSLRRVDLDTL------EERVVYEVPDDWKGYGTWVANS----DCTKLVGIEISREDWKPLTKWKGFR 159 (386)
T ss_dssp TTSSEEEEEETTTEEEEEETTT--------EEEEEE--TTEEEEEEEEE-T----TSSEEEEEEEEGGG-----SHHHHH
T ss_pred cCCCeEEEEECCCeEEEEECCcC------cEEEEEECCcccccccceeeCC----CccEEEEEEEeehhccCccccHHHH
Confidence 56677765555678888898876 3333444445555545554322 014444321
Q ss_pred ------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeC---CC-cEEEEEccccccCCCCCCCCccC
Q 008363 255 ------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFD---DG-AMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 255 ------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~---dg-~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
-.. |.-.|+.++. ...+..-...+..+.|+|....+++ |-+ +. .-|||-++. .|...
T Consensus 160 e~~~a~p~~~i~~idl~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~-------dg~~~-- 228 (386)
T PF14583_consen 160 EFYEARPHCRIFTIDLKTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINT-------DGSNV-- 228 (386)
T ss_dssp HHHHC---EEEEEEETTT----EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEET-------TS-----
T ss_pred HHHhhCCCceEEEEECCCCc--eeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEc-------CCCcc--
Confidence 012 4555666652 2222233567788999996655554 422 33 237787753 22221
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEe-----CCCeEEEEEcCCCeee
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-----ADGTVHRFQLTAKAVE 370 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-----~Dg~v~iwd~~~~~~~ 370 (568)
.++..-. -...+..=-|.|+|..|..-+ .+..|.-+|+.++..+
T Consensus 229 ---~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 229 ---KKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR 277 (386)
T ss_dssp ---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE
T ss_pred ---eeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce
Confidence 1121111 112334456888886665533 2556777778776543
No 409
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.64 E-value=4.6 Score=45.93 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=65.9
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
+.++.|+|... ...++...|+.|++..+.... ..+..+ .-...+++++|+|.| ..++.|-..| +.-
T Consensus 158 ~~~~~wnP~vp-~n~av~l~dlsl~V~~~~~~~-----~~v~s~-p~t~~~Tav~WSprG------KQl~iG~nnGt~vQ 224 (1405)
T KOG3630|consen 158 QLKNVWNPLVP-LNSAVDLSDLSLRVKSTKQLA-----QNVTSF-PVTNSQTAVLWSPRG------KQLFIGRNNGTEVQ 224 (1405)
T ss_pred cccccccCCcc-chhhhhccccchhhhhhhhhh-----hhhccc-CcccceeeEEecccc------ceeeEecCCCeEEE
Confidence 37899998766 367778889999998876331 122222 335668999999999 8888888887 776
Q ss_pred EECCCCCcceeeeC---C-CCCCeEEEEEcCCCCEEEE
Q 008363 261 WDIRDPFRPLWDIH---P-APKFIYGLDWLPDPGCVIL 294 (568)
Q Consensus 261 wD~~~~~~~~~~~~---~-h~~~i~~l~~sp~~~~l~s 294 (568)
|-..-. ....+. . ....|.+|+|.....++++
T Consensus 225 y~P~le--ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 225 YEPSLE--IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eecccc--eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 654422 111111 1 1467899999977777665
No 410
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.47 E-value=1.5 Score=29.15 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCC---EEEEEeCCCcEEEEEccc
Q 008363 278 KFIYGLDWLPDPG---CVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 278 ~~i~~l~~sp~~~---~l~s~~~dg~I~lwd~~~ 308 (568)
+.|.++.|+|... +|+.+-.-|.|.|+|+|.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998554 777777789999999983
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.25 E-value=17 Score=37.33 Aligned_cols=109 Identities=12% Similarity=-0.028 Sum_probs=55.6
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEc-----------C-C-CEEEEECCCCC-c--ceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAG-----------H-G-GLKFWDIRDPF-R--PLWDIHPAPKFIYGLDWLPDPGCVI 293 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s-----------~-d-~v~lwD~~~~~-~--~~~~~~~h~~~i~~l~~sp~~~~l~ 293 (568)
.....|+|.++| +++++-. . + .|.+++-.++. . ....+...-...+.|++.+++ |+
T Consensus 14 ~~P~~ia~d~~G------~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--ly 85 (367)
T TIGR02604 14 RNPIAVCFDERG------RLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VY 85 (367)
T ss_pred CCCceeeECCCC------CEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EE
Confidence 346788999998 7777642 1 2 36666543221 1 123333223345889999988 44
Q ss_pred EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec----CCCCEEEEEEecCCCEEEEEe
Q 008363 294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC----SSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~----h~~~V~~l~~sp~~~~l~s~s 354 (568)
++.....+++.|... +....++.. ..+..+.. +......++|.|+|.+.++.+
T Consensus 86 V~~~~~i~~~~d~~g---dg~ad~~~~-----~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 86 VATPPDILFLRDKDG---DDKADGERE-----VLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EeCCCeEEEEeCCCC---CCCCCCccE-----EEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 444443333334421 000011110 11112222 234467899999998777655
No 412
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=87.87 E-value=28 Score=33.87 Aligned_cols=147 Identities=17% Similarity=0.169 Sum_probs=87.8
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCCEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGGLKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~v~lw 261 (568)
..+.++ +++...+..+.-++|.|+.+... ..+..+-.-.+.-+++..+ | ++...+. .+++.+.
T Consensus 90 ~Dv~vs----e~yvyvad~ssGL~IvDIS~P~s----P~~~~~lnt~gyaygv~vs--G------n~aYVadlddgfLiv 153 (370)
T COG5276 90 ADVRVS----EEYVYVADWSSGLRIVDISTPDS----PTLIGFLNTDGYAYGVYVS--G------NYAYVADLDDGFLIV 153 (370)
T ss_pred heeEec----ccEEEEEcCCCceEEEeccCCCC----cceeccccCCceEEEEEec--C------CEEEEeeccCcEEEE
Confidence 456655 56777777788899999987632 1112221222434445444 4 5665555 5569999
Q ss_pred ECCCCCcceee--eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC---CC
Q 008363 262 DIRDPFRPLWD--IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS---SF 336 (568)
Q Consensus 262 D~~~~~~~~~~--~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h---~~ 336 (568)
|+.++..|... +......-..++.| |++-..+..|+-+.+.|+.+..++ .|.+| ..
T Consensus 154 dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sP-----------------vli~~~n~g~ 214 (370)
T COG5276 154 DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSP-----------------VLIGSYNTGP 214 (370)
T ss_pred ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCC-----------------eEEEEEecCC
Confidence 99988766632 22223334567777 788888889999999999764422 22222 22
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
.+.++..+++--+++.. +--+.+-|..+
T Consensus 215 g~~sv~vsdnr~y~vvy--~egvlivd~s~ 242 (370)
T COG5276 215 GTYSVSVSDNRAYLVVY--DEGVLIVDVSG 242 (370)
T ss_pred ceEEEEecCCeeEEEEc--ccceEEEecCC
Confidence 56777776654444443 33355555543
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.69 E-value=25 Score=33.05 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=58.9
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEEC--CCCC----cceeeeCC---CCCC-eEEEEEcCCCCEEEEEeCCCc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDI--RDPF----RPLWDIHP---APKF-IYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~--~~~~----~~~~~~~~---h~~~-i~~l~~sp~~~~l~s~~~dg~ 300 (568)
-+.++|+.+.. .+.++-+.+- |.-||. .++. +.+..+.. .... --.++...+|...+++-..++
T Consensus 160 sNgl~Wd~d~K-----~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~ 234 (310)
T KOG4499|consen 160 SNGLAWDSDAK-----KFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGT 234 (310)
T ss_pred CccccccccCc-----EEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcE
Confidence 45788987762 4444555565 877883 3331 22222221 1111 134455667888888888889
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~ 346 (568)
|..+|. .+|+.+ ..+.-....|++++|--.
T Consensus 235 V~~~dp--------~tGK~L--------~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 235 VQKVDP--------TTGKIL--------LEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEECC--------CCCcEE--------EEEEcCCCceEEEEecCC
Confidence 999988 568665 577777889999999644
No 414
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.49 E-value=33 Score=34.32 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=81.2
Q ss_pred cCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee-EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCC
Q 008363 189 TSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR-AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDP 266 (568)
Q Consensus 189 ~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~ 266 (568)
|..+ +-+.+-|.||++....+....... .+....|.....++. .-++...+ ..++-.+..| |+--|+...
T Consensus 144 P~~~-~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~dp~f~~~~~~~~~------~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 144 PSGN-RGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDDPLFEHPAYSRDG------GRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEET-TEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS-B-S--EEETTT------TEEEEEBTTSEEEEEEETTS
T ss_pred ecCC-CceEEEecCCceEEEEECCCCCEe-EeeccccCCCCcccccccceECCC------CeEEEEecCCEEEEEeccCC
Confidence 4444 468888899999999988442110 111112222222222 22333333 3444456666 888888765
Q ss_pred Ccc-eeeeC--C--------CCCCeEEEEEcCCCCEEEEEe---C-----CCc--EEEEEccccccCCCCCCCCccCccc
Q 008363 267 FRP-LWDIH--P--------APKFIYGLDWLPDPGCVILSF---D-----DGA--MRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 267 ~~~-~~~~~--~--------h~~~i~~l~~sp~~~~l~s~~---~-----dg~--I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
... ...+. . -++.-.-+++++....|++.- . |+. |-+||+ .+++.
T Consensus 216 ~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~--------~t~kr------ 281 (342)
T PF06433_consen 216 SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL--------KTHKR------ 281 (342)
T ss_dssp SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET--------TTTEE------
T ss_pred cccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC--------CCCeE------
Confidence 311 11111 0 012223577776555555431 1 333 444455 23433
Q ss_pred cceEEEecCCCCEEEEEEecCC-CEEEEEe-CCCeEEEEEcCCCeeecc
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLT-GMVAYCS-ADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s-~Dg~v~iwd~~~~~~~~~ 372 (568)
+..+.. ..++.+|+++.+. .+|++.+ .++.|.+||..+++..+.
T Consensus 282 --v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 282 --VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp --EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred --EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 344442 2457799999886 5676554 589999999999877654
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=87.06 E-value=41 Score=34.97 Aligned_cols=154 Identities=13% Similarity=0.044 Sum_probs=89.1
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC----
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF---- 267 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~---- 267 (568)
+.+.|++|+..|.++||+......... ..+... .-..+|..|..-+-.+ ......||.-.-..+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-~lllE~-~l~~PILqv~~G~F~s-~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-DLLLET-QLKDPILQVECGKFVS-GSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-cEEEEE-ecCCcEEEEEeccccC-CCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 456999999999999999865432111 122222 3367888887654311 002246666555558888773221
Q ss_pred ----cceeeeCCC--CCCeEEEEEcCC-----CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363 268 ----RPLWDIHPA--PKFIYGLDWLPD-----PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF 336 (568)
Q Consensus 268 ----~~~~~~~~h--~~~i~~l~~sp~-----~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~ 336 (568)
-.+..+..| ......+++-|- ..+|++=+.||.+.+|+-+...+ ..+-...-
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f-----------------~~~lp~~l 175 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF-----------------SRFLPDFL 175 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE-----------------EEEcCCCC
Confidence 111122222 223345555442 24566668899999999754221 11111111
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
-.-.+.|.+....|++++.+..|.-|.+.
T Consensus 176 lPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 22346788888889999999899888774
No 416
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.97 E-value=60 Score=36.77 Aligned_cols=24 Identities=4% Similarity=-0.046 Sum_probs=21.0
Q ss_pred EEEEEeCCCeEEEEEcCCCeeecc
Q 008363 349 MVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
.|+.++.+|.++++|-.+++..-.
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEee
Confidence 899999999999999999876654
No 417
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.75 E-value=11 Score=38.78 Aligned_cols=109 Identities=16% Similarity=0.227 Sum_probs=80.1
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
..+.| .++.|+ +|...||+--.|.+|.+++...... ........+..+..|....|.... -+|-....
T Consensus 65 d~G~I-~SIkFS--lDnkilAVQR~~~~v~f~nf~~d~~--~l~~~~~ck~k~~~IlGF~W~~s~-------e~A~i~~~ 132 (657)
T KOG2377|consen 65 DKGEI-KSIKFS--LDNKILAVQRTSKTVDFCNFIPDNS--QLEYTQECKTKNANILGFCWTSST-------EIAFITDQ 132 (657)
T ss_pred CCCce-eEEEec--cCcceEEEEecCceEEEEecCCCch--hhHHHHHhccCcceeEEEEEecCe-------eEEEEecC
Confidence 34577 999999 8889999999999999999854421 012222334455668999998874 67777777
Q ss_pred CEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC
Q 008363 257 GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 257 ~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
|+-+|-.....+.++....|...|+=..|.|+-+.++.++.
T Consensus 133 G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 133 GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 88888777666677777788888888889998876665543
No 418
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.66 E-value=31 Score=33.20 Aligned_cols=201 Identities=11% Similarity=0.058 Sum_probs=103.7
Q ss_pred eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.++....|+.. .+-.+.|..++ .++-+.+.-| .|+.+|+.+++.+....-+.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g----------~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------- 88 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDG----------TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------- 88 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETT----------EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT---------------
T ss_pred EEEEECCCCCcccCccEEecCCC----------EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc---------------
Confidence 55556677653 44567787777 6777777766 79999999988775542211
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
... +-.++.. ++.+....-.++...+||..+- +.+..+. ..+.=+.++....
T Consensus 89 --------~~F---gEGit~~---~d~l~qLTWk~~~~f~yd~~tl------~~~~~~~-y~~EGWGLt~dg~------- 140 (264)
T PF05096_consen 89 --------RYF---GEGITIL---GDKLYQLTWKEGTGFVYDPNTL------KKIGTFP-YPGEGWGLTSDGK------- 140 (264)
T ss_dssp --------T-----EEEEEEE---TTEEEEEESSSSEEEEEETTTT------EEEEEEE--SSS--EEEECSS-------
T ss_pred --------ccc---ceeEEEE---CCEEEEEEecCCeEEEEccccc------eEEEEEe-cCCcceEEEcCCC-------
Confidence 011 1223322 2345666667889999999855 6777663 2344566663322
Q ss_pred cEEEEEcCCCEEEEECCCCCcceeeeC--CCC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 248 NVILTAGHGGLKFWDIRDPFRPLWDIH--PAP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 248 ~~las~s~d~v~lwD~~~~~~~~~~~~--~h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
.++.|-+.+.|+++|..+- .....+. ... ..++-|.|- +|...+=.-....|...|. .+|+....
T Consensus 141 ~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp--------~tG~V~~~ 210 (264)
T PF05096_consen 141 RLIMSDGSSRLYFLDPETF-KEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP--------ETGKVVGW 210 (264)
T ss_dssp CEEEE-SSSEEEEE-TTT--SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET--------TT-BEEEE
T ss_pred EEEEECCccceEEECCccc-ceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC--------CCCeEEEE
Confidence 6777777777999998765 3333332 111 234566665 3432222222344555555 23443210
Q ss_pred ccccceEE-------EecCCCCEEEEEEecCCCEEEEEe
Q 008363 323 TKQQGLHL-------VNCSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 323 ~~~~~l~~-------~~~h~~~V~~l~~sp~~~~l~s~s 354 (568)
.....+.. ........+.++|.|.+..|...|
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 00000000 001135688999999865444443
No 419
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.63 E-value=51 Score=35.63 Aligned_cols=199 Identities=11% Similarity=0.098 Sum_probs=103.1
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..|.+++.++.|.-.|..+|+.+-.+..... . ...+.. + .. .+...++.. +..++.++.|
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~------~--~~~~~~-~----~~---~~~rg~av~----~~~v~v~t~d 129 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLP------D--DVIPVM-C----CD---VVNRGVALY----DGKVFFGTLD 129 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCC------c--cccccc-c----cc---cccccceEE----CCEEEEEcCC
Confidence 4777788888999999999887655421100 0 000000 0 00 000122322 3477788889
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeC--CCC--CeeEEEEccCCCCCCCCcEEEEEc-----CCC-EEEEECCCCCcceee
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSA--DTL--PIRAVSWAPAESDSDSANVILTAG-----HGG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~--h~~--~V~~v~~~p~~~~~~~~~~las~s-----~d~-v~lwD~~~~~~~~~~ 272 (568)
+.|.-.|..++ +.+-.+.. +.. .+.+--.--++ .+++..+ .++ |.-+|..++ +.++.
T Consensus 130 g~l~ALDa~TG------k~~W~~~~~~~~~~~~~tssP~v~~g------~Vivg~~~~~~~~~G~v~AlD~~TG-~~lW~ 196 (527)
T TIGR03075 130 ARLVALDAKTG------KVVWSKKNGDYKAGYTITAAPLVVKG------KVITGISGGEFGVRGYVTAYDAKTG-KLVWR 196 (527)
T ss_pred CEEEEEECCCC------CEEeecccccccccccccCCcEEECC------EEEEeecccccCCCcEEEEEECCCC-ceeEe
Confidence 99999998877 44433321 110 11110001122 3444322 246 888888887 55544
Q ss_pred eCCC-------------------------------CCCe-EEEEEcCCCCEEEEEeCC-----C-----------cEEEE
Q 008363 273 IHPA-------------------------------PKFI-YGLDWLPDPGCVILSFDD-----G-----------AMRIV 304 (568)
Q Consensus 273 ~~~h-------------------------------~~~i-~~l~~sp~~~~l~s~~~d-----g-----------~I~lw 304 (568)
+..- ...+ ..+++.|...+|+.+... + .|.-.
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl 276 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR 276 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence 3211 1112 245677766777766532 2 33344
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCE---------EEEEEecCCC---EEEEEeCCCeEEEEEcCCCeee
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI---------WSVQVSRLTG---MVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V---------~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
|+ .+|+..+ .++....-+ .-+.+..+|+ .|+.++.+|.+++.|-.+++..
T Consensus 277 d~--------~TG~~~W--------~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 277 DP--------DTGKIKW--------HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cc--------ccCCEEE--------eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 44 3566543 222211111 1122324554 7889999999999999998764
No 420
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.27 E-value=9.7 Score=39.74 Aligned_cols=72 Identities=19% Similarity=0.324 Sum_probs=46.6
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCCEEEEEC----------CCCCcce---ee-------eCCC-CCCeEEEEEcCCC
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGGLKFWDI----------RDPFRPL---WD-------IHPA-PKFIYGLDWLPDP 289 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~----------~~~~~~~---~~-------~~~h-~~~i~~l~~sp~~ 289 (568)
.|..|..++.| ..++-.|.+||.+-.+ .++ +++ ++ +... .-.+..++|+|+.
T Consensus 105 eV~~vl~s~~G------S~VaL~G~~Gi~vMeLp~rwG~~s~~eDg-k~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S 177 (741)
T KOG4460|consen 105 EVYQVLLSPTG------SHVALIGIKGLMVMELPKRWGKNSEFEDG-KSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSS 177 (741)
T ss_pred EEEEEEecCCC------ceEEEecCCeeEEEEchhhcCccceecCC-CceEEEEeecccceeeccCCceeeeeccccCCc
Confidence 47778889999 6777778888555444 111 111 11 1111 1124578899975
Q ss_pred ---CEEEEEeCCCcEEEEEcccc
Q 008363 290 ---GCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 290 ---~~l~s~~~dg~I~lwd~~~~ 309 (568)
..|+.-+.|++||+||+...
T Consensus 178 ~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 178 ILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred cCCceEEEEecCcEEEEEecCCc
Confidence 67888889999999999654
No 421
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.08 E-value=18 Score=33.59 Aligned_cols=120 Identities=11% Similarity=0.127 Sum_probs=68.0
Q ss_pred cEEEEEcCCCEEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CC---cEEEE-Ecccccc-CCCCC--
Q 008363 248 NVILTAGHGGLKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DG---AMRIV-SLLKAAY-DVPAT-- 316 (568)
Q Consensus 248 ~~las~s~d~v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg---~I~lw-d~~~~~~-~~~~~-- 316 (568)
.+|++++...|.+|++.... ..+..|.. -+.|..+.++..|.||++-=. .. .+|+| +.+.... ..|..
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 45555444449999998433 44556654 377899999999999999632 22 56765 3322211 11111
Q ss_pred --CCCccCcc----ccceEEEe-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 317 --GKPFAGTK----QQGLHLVN-CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 317 --g~~~~~~~----~~~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
|..+.... ...+..+. .-..++.+++..|...-|+.|+ ++.+.+|.+.....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEE
Confidence 21111000 01122111 1244678888888866666666 56899999865443
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=85.92 E-value=39 Score=34.10 Aligned_cols=153 Identities=13% Similarity=0.134 Sum_probs=77.2
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEE-EEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVAL-WKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~i-wd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
...+ +.+.+. +++.++++ +..|.+.. ++-... .-......-...++++.+.+++ .+++.+ .+
T Consensus 172 ~g~~-~~i~~~--~~g~~v~~-g~~G~i~~s~~~gg~------tW~~~~~~~~~~l~~i~~~~~g------~~~~vg-~~ 234 (334)
T PRK13684 172 AGVV-RNLRRS--PDGKYVAV-SSRGNFYSTWEPGQT------AWTPHQRNSSRRLQSMGFQPDG------NLWMLA-RG 234 (334)
T ss_pred cceE-EEEEEC--CCCeEEEE-eCCceEEEEcCCCCC------eEEEeeCCCcccceeeeEcCCC------CEEEEe-cC
Confidence 3455 778877 66655544 44665543 121111 1111122334568999999988 666655 44
Q ss_pred C-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 257 G-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+ +++=....+ ..-.... .....+..+.+.|++.. ++++.+|.|.. ... .|+.. +.+...
T Consensus 235 G~~~~~s~d~G-~sW~~~~~~~~~~~~~l~~v~~~~~~~~-~~~G~~G~v~~-S~d--------~G~tW-----~~~~~~ 298 (334)
T PRK13684 235 GQIRFNDPDDL-ESWSKPIIPEITNGYGYLDLAYRTPGEI-WAGGGNGTLLV-SKD--------GGKTW-----EKDPVG 298 (334)
T ss_pred CEEEEccCCCC-CccccccCCccccccceeeEEEcCCCCE-EEEcCCCeEEE-eCC--------CCCCC-----eECCcC
Confidence 5 433222222 1111111 11234788999998774 45556776643 221 23322 111110
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
..-....+.+.|..++..++ .+..|.|..|+-
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 299 EEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYVG 330 (334)
T ss_pred CCCCcceEEEEEeCCCceEE-ECCCceEEEecC
Confidence 11223577777776665544 556888877754
No 423
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.23 E-value=65 Score=35.52 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=44.0
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC--CCCccee--eee----cccCCCCceEEcccCCCCCccc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS--RNRPMHF--LCG----SVTEDESAITVNTPLDNTPVPL 406 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~--~~~~~~~--~~~----s~~~~~~~i~~~~~~~~~~~~~ 406 (568)
.+.+..+.+||+.++|+.-..+|.|.+-..+..+.--+.. ..-.|.- =|+ .++-+.....++.+-..+++.+
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~y 295 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYY 295 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCcccccc
Confidence 4567788999999999999999999888776543322211 1111111 122 2333444444566666666665
Q ss_pred ccc
Q 008363 407 KKT 409 (568)
Q Consensus 407 k~~ 409 (568)
.-.
T Consensus 296 d~t 298 (829)
T KOG2280|consen 296 DET 298 (829)
T ss_pred CCC
Confidence 544
No 424
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.17 E-value=7.7 Score=34.94 Aligned_cols=35 Identities=11% Similarity=0.380 Sum_probs=29.1
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD 265 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~ 265 (568)
.|..++|+|.|.+....-+||....++ |.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 688999999886666678899999998 99997664
No 425
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.16 E-value=14 Score=38.50 Aligned_cols=144 Identities=10% Similarity=0.049 Sum_probs=88.8
Q ss_pred EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC--CCcEEEEEcCCCEEEEECCCCCcceeee
Q 008363 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD--SANVILTAGHGGLKFWDIRDPFRPLWDI 273 (568)
Q Consensus 196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~--~~~~las~s~d~v~lwD~~~~~~~~~~~ 273 (568)
+..|..-..+.-.|+..+ +.+..+..|..- -|.|.|.....+ ....|+..|..+|.-.|.|.....+...
T Consensus 483 ~~dg~~~~kLykmDIErG------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 483 YLDGGERDKLYKMDIERG------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred EecCCCcccceeeecccc------eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 344555566777777766 777788777664 567777641110 2245666666667767877554333222
Q ss_pred CCCCCCeEEEEEc----CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCE
Q 008363 274 HPAPKFIYGLDWL----PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGM 349 (568)
Q Consensus 274 ~~h~~~i~~l~~s----p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~ 349 (568)
.....++.-.|+ ....+|++++..|.|++||.- |..- -..+.+-...|..+..+.+|.+
T Consensus 555 -esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRi---------g~rA-------KtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 555 -ESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRI---------GKRA-------KTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred -eehhccccccccccccccCceEEEecCCCceeeehhh---------cchh-------hhcCcccccceeeeEeecCCcE
Confidence 112223333333 245689999999999999972 2211 1245666778999999999987
Q ss_pred EEEEeCCCeEEEEEcC
Q 008363 350 VAYCSADGTVHRFQLT 365 (568)
Q Consensus 350 l~s~s~Dg~v~iwd~~ 365 (568)
|++.+ ...+.+-|+.
T Consensus 618 ilaTC-k~yllL~d~~ 632 (776)
T COG5167 618 ILATC-KNYLLLTDVP 632 (776)
T ss_pred EEEee-cceEEEEecc
Confidence 76666 4577777774
No 426
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=85.07 E-value=41 Score=33.05 Aligned_cols=214 Identities=14% Similarity=0.209 Sum_probs=109.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC------Ccee-eEEeccCCccCCCCceEEEeecceeccccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL------LRTM-KAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~------~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
-|.|+++|.+ .+-++....+...+||... .+.+ -.+.... .
T Consensus 25 ~WGia~~p~~----------~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~----------------------~ 72 (336)
T TIGR03118 25 AWGLSYRPGG----------PFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPP----------------------P 72 (336)
T ss_pred cceeEecCCC----------CEEEecCCcceEEeecCCcccccCCccceEEEecCCC----------------------C
Confidence 4789999998 4677777789999999872 1111 1111000 0
Q ss_pred CCcCccceEEEEccC------CC----CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCe-eEEEEccCCCC
Q 008363 176 GGTQSIPLTMEWSTS------PP----HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPI-RAVSWAPAESD 243 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~------~~----g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V-~~v~~~p~~~~ 243 (568)
.+....|+.+.|+.. .. ...++.++.||+|.-|...-..... ......+. .-.+.| ..+++...+
T Consensus 73 ~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~-~~~~~~~d~s~~gavYkGLAi~~~~-- 149 (336)
T TIGR03118 73 LAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRM-TRAEIVVDASQQGNVYKGLAVGPTG-- 149 (336)
T ss_pred CCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccc-cccEEEEccCCCcceeeeeEEeecC--
Confidence 011111355555521 11 1246888999999999954321100 01112222 112333 345555442
Q ss_pred CCCCcEEEEEc-CCC-EEEEECCCCCcce-eeeCCC--------------CC--CeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363 244 SDSANVILTAG-HGG-LKFWDIRDPFRPL-WDIHPA--------------PK--FIYGLDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 244 ~~~~~~las~s-~d~-v~lwD~~~~~~~~-~~~~~h--------------~~--~i~~l~~sp~~~~l~s~~~dg~I~lw 304 (568)
...+|..+. ..+ |.++|-.-....+ ..+..- .+ .|+-..-.++.+.=+.|..-|.|-+|
T Consensus 150 --~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvF 227 (336)
T TIGR03118 150 --GGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVF 227 (336)
T ss_pred --CCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEE
Confidence 114554443 345 9998865321111 001000 00 01111112233333334445789999
Q ss_pred EccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecC------CCEEEEEeCCCeEEEEEcCCCeee
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRL------TGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~------~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
|+ .|+++ +.+. +.-..-|.|+..|- +.+|+--=.||+|..||..++...
T Consensus 228 d~---------~G~l~--------~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~ 284 (336)
T TIGR03118 228 TL---------NGQLL--------RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL 284 (336)
T ss_pred cC---------CCcEE--------EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee
Confidence 98 46654 3332 23345588888664 466776668999999999876644
No 427
>PHA03098 kelch-like protein; Provisional
Probab=84.18 E-value=19 Score=38.95 Aligned_cols=102 Identities=7% Similarity=-0.015 Sum_probs=49.1
Q ss_pred CCCEEEEEeCCC------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EE
Q 008363 192 PHDYLLAGCHDG------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LK 259 (568)
Q Consensus 192 ~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~ 259 (568)
++.+++.|+.++ .+..||..+..+ ..+..+.........+.+ ++ .+++.||.+ . +.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W----~~~~~~~~~R~~~~~~~~--~~------~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW----NKVPELIYPRKNPGVTVF--NN------RIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee----eECCCCCcccccceEEEE--CC------EEEEEeCCCCCEecceEE
Confidence 456777777643 467788776643 111111111111222222 34 677777754 2 77
Q ss_pred EEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEcc
Q 008363 260 FWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLL 307 (568)
Q Consensus 260 lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~ 307 (568)
.||..+.... ...+. +...-.+++. -++...+.||.+ ..+..||+.
T Consensus 362 ~yd~~~~~W~~~~~lp-~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 362 SWKPGESKWREEPPLI-FPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EEcCCCCceeeCCCcC-cCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCC
Confidence 7887765311 11111 1111112222 246666667632 357888874
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=83.97 E-value=8.5 Score=36.20 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=51.2
Q ss_pred EcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-----cCCCCEEEEEEecCCCEEEEEeCCCeE
Q 008363 285 WLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-----CSSFAIWSVQVSRLTGMVAYCSADGTV 359 (568)
Q Consensus 285 ~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-----~h~~~V~~l~~sp~~~~l~s~s~Dg~v 359 (568)
+..++.+|++-+.+|.+++||+.+...-.+ .. ...++-... .....|..+.++.+|.-|++-+ +|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~--~~-----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~ 89 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLP--PV-----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDS 89 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccC--Cc-----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCE
Confidence 445688999999999999999965331110 00 011111100 3556788999998887777766 5788
Q ss_pred EEEEcCCCeeec
Q 008363 360 HRFQLTAKAVEK 371 (568)
Q Consensus 360 ~iwd~~~~~~~~ 371 (568)
+.|+..-+.+.+
T Consensus 90 y~y~~~L~~W~~ 101 (219)
T PF07569_consen 90 YSYSPDLGCWIR 101 (219)
T ss_pred EEeccccceeEE
Confidence 999986555443
No 429
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.81 E-value=15 Score=38.39 Aligned_cols=89 Identities=12% Similarity=0.114 Sum_probs=54.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC-CCCCCCccCccccceE--EEec-CCCCEEEEEEecCC---CEEE
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV-PATGKPFAGTKQQGLH--LVNC-SSFAIWSVQVSRLT---GMVA 351 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~-~~~g~~~~~~~~~~l~--~~~~-h~~~V~~l~~sp~~---~~l~ 351 (568)
.|..+..++.|..++..|.+|.+.++=.+.+..+. ...|++...-...++. .|.. ..-.+..++|+|+. ..|+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 46778889999999999999987665433332111 1234332100000000 1111 11245678999985 7888
Q ss_pred EEeCCCeEEEEEcCCC
Q 008363 352 YCSADGTVHRFQLTAK 367 (568)
Q Consensus 352 s~s~Dg~v~iwd~~~~ 367 (568)
.-+.|..|++|++...
T Consensus 185 iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEP 200 (741)
T ss_pred EEecCcEEEEEecCCc
Confidence 8899999999999754
No 430
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.34 E-value=47 Score=32.39 Aligned_cols=165 Identities=8% Similarity=0.169 Sum_probs=98.6
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.|-...+ .++.|+ |+.+.|++......-.||=...+ ..++++.- .-...-.|.+...+ .+.++-
T Consensus 82 ~g~~~nv-S~LTyn--p~~rtLFav~n~p~~iVElt~~G------dlirtiPL~g~~DpE~Ieyig~n------~fvi~d 146 (316)
T COG3204 82 LGETANV-SSLTYN--PDTRTLFAVTNKPAAIVELTKEG------DLIRTIPLTGFSDPETIEYIGGN------QFVIVD 146 (316)
T ss_pred ccccccc-cceeeC--CCcceEEEecCCCceEEEEecCC------ceEEEecccccCChhHeEEecCC------EEEEEe
Confidence 4555667 999999 77777777666666555544434 55554421 12224567777776 555555
Q ss_pred cCCC-EEEEECCCCCcce------eeeC--CC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363 254 GHGG-LKFWDIRDPFRPL------WDIH--PA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~------~~~~--~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
-.+. +.++.+......+ ..+. .+ ......++|.|..+.|+.+=+-.-+.||.+..... .+
T Consensus 147 ER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~-------~l--- 216 (316)
T COG3204 147 ERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPS-------SL--- 216 (316)
T ss_pred hhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCc-------cc---
Confidence 5566 7777665442111 1111 22 45567999999999999998888888887742110 00
Q ss_pred cccceEEEecCC-------CCEEEEEEecC-CCEEEEEeCCCeEEEEEcCCC
Q 008363 324 KQQGLHLVNCSS-------FAIWSVQVSRL-TGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 324 ~~~~l~~~~~h~-------~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.++....++ ..|.++.|++. +.+|+.+..++.|.-.|+...
T Consensus 217 ---~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 217 ---SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ---ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 001111111 34677888876 566777777777777777543
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=82.80 E-value=42 Score=35.84 Aligned_cols=172 Identities=5% Similarity=-0.090 Sum_probs=80.7
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--C-EEEEEC
Q 008363 192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--G-LKFWDI 263 (568)
Q Consensus 192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD~ 263 (568)
++.++++|+.++ ++..||..+..+ ..+..+....... +++ .-++ .+++.||.+ . +..||.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W----~~~~~m~~~r~~~-~~v-~~~~------~iYviGG~~~~~sve~ydp 338 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNW----IPIPPMNSPRLYA-SGV-PANN------KLYVVGGLPNPTSVERWFH 338 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEE----EECCCCCchhhcc-eEE-EECC------EEEEECCcCCCCceEEEEC
Confidence 345677787653 466778775532 1211121111111 222 2344 677777763 3 888987
Q ss_pred CCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC---cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 264 RDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG---AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 264 ~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
.+.. ..+..+.........+. -+|+..+.||.++ .+..||.+. .+. ..+..+........
T Consensus 339 ~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~--------~~W------~~~~~m~~~r~~~~ 402 (480)
T PHA02790 339 GDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNH--------DQW------QFGPSTYYPHYKSC 402 (480)
T ss_pred CCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCC--------CEE------EeCCCCCCccccce
Confidence 6542 11222211111112222 2477777777543 466787743 111 00000110111111
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 340 SVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
.+ .-++.+.+.| |.+.+||..+..+..... -+.+...++....++....+|.
T Consensus 403 ~~--~~~~~IYv~G---G~~e~ydp~~~~W~~~~~-m~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 403 AL--VFGRRLFLVG---RNAEFYCESSNTWTLIDD-PIYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred EE--EECCEEEEEC---CceEEecCCCCcEeEcCC-CCCCccccEEEEECCEEEEECC
Confidence 12 2245555555 357789998887775432 2344445555555665555554
No 432
>PRK13684 Ycf48-like protein; Provisional
Probab=82.76 E-value=57 Score=32.92 Aligned_cols=112 Identities=8% Similarity=0.062 Sum_probs=58.1
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
..+ +++.+. +++..+++| ..|.+.+=....+.. ...+..- ..-...+.++.|.+.+ .+++.+ .++
T Consensus 215 ~~l-~~i~~~--~~g~~~~vg-~~G~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~~~------~~~~~G-~~G 280 (334)
T PRK13684 215 RRL-QSMGFQ--PDGNLWMLA-RGGQIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRTPG------EIWAGG-GNG 280 (334)
T ss_pred ccc-eeeeEc--CCCCEEEEe-cCCEEEEccCCCCCc---cccccCCccccccceeeEEEcCCC------CEEEEc-CCC
Confidence 445 788877 677666665 467765322232211 0111100 0112347889999887 566555 455
Q ss_pred EEEEECCCCCcceeee---CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 258 LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
..+.-...+ ..-... ..-....+.+.|..+++. ++.+..|.|--|+-
T Consensus 281 ~v~~S~d~G-~tW~~~~~~~~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 281 TLLVSKDGG-KTWEKDPVGEEVPSNFYKIVFLDPEKG-FVLGQRGVLLRYVG 330 (334)
T ss_pred eEEEeCCCC-CCCeECCcCCCCCcceEEEEEeCCCce-EEECCCceEEEecC
Confidence 333333332 222111 122345778888866665 45566788876653
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.34 E-value=6.3 Score=37.07 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCC
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASD 214 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~ 214 (568)
..+.+|++-+.+|.+++||+...+
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k 43 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGK 43 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCe
Confidence 357799999999999999998764
No 434
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=81.73 E-value=34 Score=32.12 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEE--CCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWE--VPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd--~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.++|+-+.. .+..+-+.+-+|.-|| .++|..... ...+.+..... .++..+-+
T Consensus 162 gl~Wd~d~K---------~fY~iDsln~~V~a~dyd~~tG~~snr-----------~~i~dlrk~~~-----~e~~~PDG 216 (310)
T KOG4499|consen 162 GLAWDSDAK---------KFYYIDSLNYEVDAYDYDCPTGDLSNR-----------KVIFDLRKSQP-----FESLEPDG 216 (310)
T ss_pred cccccccCc---------EEEEEccCceEEeeeecCCCcccccCc-----------ceeEEeccCCC-----cCCCCCCc
Confidence 466665542 4566667778887787 556543311 11111111100 12222223
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~ 240 (568)
.+++ .+|.+.++...-|+|.-.|..++ +.+..+.--+..|++++|--.
T Consensus 217 m~ID----~eG~L~Va~~ng~~V~~~dp~tG------K~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 217 MTID----TEGNLYVATFNGGTVQKVDPTTG------KILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred ceEc----cCCcEEEEEecCcEEEEECCCCC------cEEEEEEcCCCceEEEEecCC
Confidence 5665 57888999999999999999987 888888777899999999765
No 435
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=80.97 E-value=61 Score=32.11 Aligned_cols=115 Identities=14% Similarity=0.246 Sum_probs=60.0
Q ss_pred eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363 226 SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 226 ~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l 303 (568)
..-.+.+..+.-++++ .+++.++.+. +.-||--... .+... .-...|..|.|.|++...++ ...|.|++
T Consensus 141 ~~~~gs~~~~~r~~dG------~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~~~~lw~~-~~Gg~~~~ 211 (302)
T PF14870_consen 141 SETSGSINDITRSSDG------RYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSPDGNLWML-ARGGQIQF 211 (302)
T ss_dssp -S----EEEEEE-TTS-------EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEE-ETTTEEEE
T ss_pred cCCcceeEeEEECCCC------cEEEEECcccEEEEecCCCccceEEcc--CccceehhceecCCCCEEEE-eCCcEEEE
Confidence 3445778999999998 8898888888 7788866432 23222 23577999999999876554 48888888
Q ss_pred EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEE
Q 008363 304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHR 361 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~i 361 (568)
=+... .++... +.+..+......+..++|.+++...++|+ .|.+.+
T Consensus 212 s~~~~-------~~~~w~----~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~ 257 (302)
T PF14870_consen 212 SDDPD-------DGETWS----EPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV 257 (302)
T ss_dssp EE-TT-------EEEEE-------B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE
T ss_pred ccCCC-------Cccccc----cccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE
Confidence 76211 010000 00001111223578999998877666555 555543
No 436
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.61 E-value=41 Score=39.33 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.7
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 344 SRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 344 sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
++++..++++..||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999998755
No 437
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=78.84 E-value=0.45 Score=48.73 Aligned_cols=141 Identities=13% Similarity=0.230 Sum_probs=91.9
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
+|-.+.+ ...|-|.+ .-|+.++.+-.|..||-.. +....+ .
T Consensus 32 aalv~pi-~~~w~~e~----------~nlavaca~tiv~~YD~ag-q~~le~---------------------------n 72 (615)
T KOG2247|consen 32 AALVGPI-IHRWRPEG----------HNLAVACANTIVIYYDKAG-QVILEL---------------------------N 72 (615)
T ss_pred hhccccc-eeeEecCC----------CceehhhhhhHHHhhhhhc-ceeccc---------------------------C
Confidence 3444566 78899988 5688888888888888665 222211 1
Q ss_pred CcCccceEEEEccCCCCCE-EEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 177 GTQSIPLTMEWSTSPPHDY-LLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~-l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.++.. ..++|. .+++. ++.+-..+.+.+||+.+... +.+ .+.+ |.... +.|++.. ..++.+.
T Consensus 73 ~tg~a-ldm~wD--kegdvlavlAek~~piylwd~n~eyt----qqL-E~gg~~s~sl--l~wsKg~------~el~ig~ 136 (615)
T KOG2247|consen 73 PTGKA-LDMAWD--KEGDVLAVLAEKTGPIYLWDVNSEYT----QQL-ESGGTSSKSL--LAWSKGT------PELVIGN 136 (615)
T ss_pred CchhH-hhhhhc--cccchhhhhhhcCCCeeechhhhhhH----HHH-hccCcchHHH--HhhccCC------ccccccc
Confidence 22222 677787 56654 45566788999999985521 111 2212 22222 7888887 5677776
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI 293 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~ 293 (568)
.-+ +.|+..++. +.......|...+++++|.+.+..+.
T Consensus 137 ~~gn~viynhgts-R~iiv~Gkh~RRgtq~av~lEd~vil 175 (615)
T KOG2247|consen 137 NAGNIVIYNHGTS-RRIIVMGKHQRRGTQIAVTLEDYVIL 175 (615)
T ss_pred cccceEEEeccch-hhhhhhcccccceeEEEecccceeee
Confidence 666 999998876 44444444888999999998775443
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=78.81 E-value=15 Score=32.99 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCEEEEEEecCC------CEEEEEeCCCeEEEEEcC
Q 008363 336 FAIWSVQVSRLT------GMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 336 ~~V~~l~~sp~~------~~l~s~s~Dg~v~iwd~~ 365 (568)
..|.+++|||.| -+|++.+.+|.|.||.-.
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 478999999964 378999999999999874
No 439
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=78.35 E-value=8 Score=24.73 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=20.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeC-C--CcEEEE
Q 008363 275 PAPKFIYGLDWLPDPGCVILSFD-D--GAMRIV 304 (568)
Q Consensus 275 ~h~~~i~~l~~sp~~~~l~s~~~-d--g~I~lw 304 (568)
..........|+|||+.|+-++. + |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 33455688999999999987755 4 665555
No 440
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.33 E-value=71 Score=30.74 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=62.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEE-ccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEc---CCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWK-FVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAG---HGG 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd-~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s---~d~ 257 (568)
..-.|. +++...+....+...+++. ...+. ...+.. ...-...|..+.++|+| ..+|... .++
T Consensus 69 ~~PS~d--~~g~~W~v~~~~~~~~~~~~~~~g~----~~~~~v~~~~~~~~I~~l~vSpDG------~RvA~v~~~~~~~ 136 (253)
T PF10647_consen 69 TRPSWD--PDGWVWTVDDGSGGVRVVRDSASGT----GEPVEVDWPGLRGRITALRVSPDG------TRVAVVVEDGGGG 136 (253)
T ss_pred cccccc--CCCCEEEEEcCCCceEEEEecCCCc----ceeEEecccccCCceEEEEECCCC------cEEEEEEecCCCC
Confidence 666788 6776666666666667764 22221 122221 11112289999999999 5555444 223
Q ss_pred -EEEEECCCCC--------cceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEE
Q 008363 258 -LKFWDIRDPF--------RPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRI 303 (568)
Q Consensus 258 -v~lwD~~~~~--------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~l 303 (568)
|.+=-+.... .++.........++.+.|.+++.+++.+.. ++.+..
T Consensus 137 ~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 137 RVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred eEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 6655432111 112222233567899999999998877755 443433
No 441
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=77.18 E-value=1e+02 Score=32.50 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=23.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL 142 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~ 142 (568)
.-|.|+|.|++ .+|++--..|.|++++-.++
T Consensus 31 ~Pw~maflPDG----------~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 31 KPWALLWGPDN----------QLWVTERATGKILRVNPETG 61 (454)
T ss_pred CceEEEEcCCC----------eEEEEEecCCEEEEEeCCCC
Confidence 34599999998 67766554699999976553
No 442
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=76.51 E-value=42 Score=32.08 Aligned_cols=144 Identities=10% Similarity=0.080 Sum_probs=75.1
Q ss_pred EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---C-EEEEECCC-CCcceeee----CC
Q 008363 205 VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---G-LKFWDIRD-PFRPLWDI----HP 275 (568)
Q Consensus 205 I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---~-v~lwD~~~-~~~~~~~~----~~ 275 (568)
-.+||+.+... +++.. .....+.+-+|.++| .+|.+|+.. . +++++... ...+-+.- -.
T Consensus 48 s~~yD~~tn~~----rpl~v--~td~FCSgg~~L~dG------~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~ 115 (243)
T PF07250_consen 48 SVEYDPNTNTF----RPLTV--QTDTFCSGGAFLPDG------RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ 115 (243)
T ss_pred EEEEecCCCcE----EeccC--CCCCcccCcCCCCCC------CEEEeCCCCccccceEEEecCCCCCCCCceECccccc
Confidence 35788876622 33322 123334455677888 899998772 2 99998765 11111111 12
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEec-CC-CCEEEEEEecCCCEEEE
Q 008363 276 APKFIYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SS-FAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 276 h~~~i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~-~~V~~l~~sp~~~~l~s 352 (568)
...+--++...|||+.|+.||... +..+|.-.... ..... ...+..... .. .-=--+...|+|++++.
T Consensus 116 ~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~------~~~~~---~~~l~~~~~~~~~nlYP~~~llPdG~lFi~ 186 (243)
T PF07250_consen 116 SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG------PGPVT---LPFLSQTSDTLPNNLYPFVHLLPDGNLFIF 186 (243)
T ss_pred CCCccccceECCCCCEEEEeCcCCCcccccCCccCC------CCcee---eecchhhhccCccccCceEEEcCCCCEEEE
Confidence 233334566788999999998864 33444332110 11100 000000000 00 11114667799999988
Q ss_pred EeCCCeEEEEEcCCCeeec
Q 008363 353 CSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 353 ~s~Dg~v~iwd~~~~~~~~ 371 (568)
+..++ .|||..+..+.+
T Consensus 187 an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 187 ANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred EcCCc--EEEeCCCCeEEe
Confidence 88654 456887665533
No 443
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=75.93 E-value=89 Score=31.18 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=30.0
Q ss_pred cEEEEEcC-----CC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC----cEEEEEcc
Q 008363 248 NVILTAGH-----GG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDG----AMRIVSLL 307 (568)
Q Consensus 248 ~~las~s~-----d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg----~I~lwd~~ 307 (568)
.+++.|+. -. +..||+.+..- .+..+.... .....+..-+++..+.|+.++ .+.+||+.
T Consensus 125 ~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 125 TLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred EEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecC
Confidence 57777764 13 88889876532 111121111 111222233567777777654 24577774
No 444
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.92 E-value=68 Score=29.84 Aligned_cols=103 Identities=14% Similarity=0.222 Sum_probs=63.8
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-------CEEE---EEC
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-------GLKF---WDI 263 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-------~v~l---wD~ 263 (568)
+.|+.+...+.|.+|++... ...++..|.. -+.|..+.++..| ++|+|--.+ -+|+ |+.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~----~~~~~~~F~T-v~~V~~l~y~~~G------DYlvTlE~k~~~~~~~fvR~Y~NWr~ 97 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQE----ECPLLCTFST-VGRVLQLVYSEAG------DYLVTLEEKNKRSPVDFVRAYFNWRS 97 (215)
T ss_pred ceEEEEcCCCEEEEEEcccC----CCceeEEEcc-hhheeEEEecccc------ceEEEEEeecCCccceEEEEEEEhhh
Confidence 45555566788999999844 2366667744 4789999999999 899986332 2455 333
Q ss_pred C-CCCccee-eeCC---------------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 264 R-DPFRPLW-DIHP---------------------APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 264 ~-~~~~~~~-~~~~---------------------h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
. ....++. .+-| -...+.+++..|-...|+.|+ ++.+.||.+..
T Consensus 98 ~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 98 QKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 3 1112221 1112 133556777777544455554 46788998854
No 445
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=75.92 E-value=40 Score=33.99 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.9
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEE
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWE 138 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd 138 (568)
+.|+|.|++ .+|+ +...|.|++++
T Consensus 5 ~~~a~~pdG----------~l~v-~e~~G~i~~~~ 28 (331)
T PF07995_consen 5 RSMAFLPDG----------RLLV-AERSGRIWVVD 28 (331)
T ss_dssp EEEEEETTS----------CEEE-EETTTEEEEEE
T ss_pred eEEEEeCCC----------cEEE-EeCCceEEEEe
Confidence 589999998 5655 46699999999
No 446
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=75.74 E-value=43 Score=34.77 Aligned_cols=48 Identities=6% Similarity=0.017 Sum_probs=33.8
Q ss_pred EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC
Q 008363 224 CFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK 278 (568)
Q Consensus 224 ~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~ 278 (568)
.+......+.+|..+|.+ .+.|+...-| |.|+|+... ..++...+..+
T Consensus 302 ~l~D~~R~~~~i~~sP~~------~laA~tDslGRV~LiD~~~~-~vvrmWKGYRd 350 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSG------RLAAVTDSLGRVLLIDVARG-IVVRMWKGYRD 350 (415)
T ss_pred eeccCCceEEEEEECCCC------CEEEEEcCCCcEEEEECCCC-hhhhhhccCcc
Confidence 344445568899999998 6777764446 999999987 55555555443
No 447
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=75.27 E-value=96 Score=31.26 Aligned_cols=39 Identities=10% Similarity=-0.033 Sum_probs=20.9
Q ss_pred eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 358 TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 358 ~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
.+.+||..+..+..... -+.+...++++..++..++++-
T Consensus 291 ~~e~yd~~~~~W~~~~~-lp~~~~~~~~~~~~~~iyv~GG 329 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGK-LPQGLAYGVSVSWNNGVLLIGG 329 (346)
T ss_pred EeeEEEecCCcccccCC-CCCCceeeEEEEcCCEEEEEec
Confidence 46788887766654422 2333333444455665555543
No 448
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=74.73 E-value=98 Score=31.09 Aligned_cols=169 Identities=14% Similarity=0.080 Sum_probs=93.0
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecce
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
+++..+.-.+ |. -.-|.++ .-+.+.|.||++.-..+.. |+..+.. .+.+
T Consensus 129 kvv~ei~~PG-C~---~iyP~~~---------~~F~~lC~DGsl~~v~Ld~~Gk~~~~~----------------t~~F- 178 (342)
T PF06433_consen 129 KVVGEIDTPG-CW---LIYPSGN---------RGFSMLCGDGSLLTVTLDADGKEAQKS----------------TKVF- 178 (342)
T ss_dssp EEEEEEEGTS-EE---EEEEEET---------TEEEEEETTSCEEEEEETSTSSEEEEE----------------EEES-
T ss_pred ceeeeecCCC-EE---EEEecCC---------CceEEEecCCceEEEEECCCCCEeEee----------------cccc-
Confidence 4555555566 43 2334443 4578889999999999985 5554221 1111
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----------CCCeeEEEEcc
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----------TLPIRAVSWAP 239 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----------~~~V~~v~~~p 239 (568)
..-...+-..-++. ..+..++--+..|.|+--|+..... .....+.-- -+.-.-+++++
T Consensus 179 -----~~~~dp~f~~~~~~--~~~~~~~F~Sy~G~v~~~dlsg~~~----~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~ 247 (342)
T PF06433_consen 179 -----DPDDDPLFEHPAYS--RDGGRLYFVSYEGNVYSADLSGDSA----KFGKPWSLLTDAEKADGWRPGGWQLIAYHA 247 (342)
T ss_dssp -----STTTS-B-S--EEE--TTTTEEEEEBTTSEEEEEEETTSSE----EEEEEEESS-HHHHHTTEEE-SSS-EEEET
T ss_pred -----CCCCcccccccceE--CCCCeEEEEecCCEEEEEeccCCcc----cccCcccccCccccccCcCCcceeeeeecc
Confidence 11111220122232 3455666678889998888876522 233333211 12234467776
Q ss_pred CCCCCCCCcEEEEE-------cCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEe-CCCcEEEEEcc
Q 008363 240 AESDSDSANVILTA-------GHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSF-DDGAMRIVSLL 307 (568)
Q Consensus 240 ~~~~~~~~~~las~-------s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~-~dg~I~lwd~~ 307 (568)
.. ..+++-- ..+ . |.++|+.+. +.+..+.- ...+.+|..+.+.+ +|++.+ .++.|.+||..
T Consensus 248 ~~-----~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 248 AS-----GRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp TT-----TEEEEEEEE--TT-TTS-EEEEEEEETTTT-EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred cc-----CeEEEEecCCCCCCccCCceEEEEEECCCC-eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence 54 1333321 113 2 888898887 55555531 23477999999876 444444 58999999994
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.40 E-value=43 Score=39.25 Aligned_cols=151 Identities=16% Similarity=0.173 Sum_probs=81.9
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE--------ccCCCCCCCCcEEEEEcCCCEEEEECC----CCCcc
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW--------APAESDSDSANVILTAGHGGLKFWDIR----DPFRP 269 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~--------~p~~~~~~~~~~las~s~d~v~lwD~~----~~~~~ 269 (568)
|..+.+|+..++ .....+.+-+..|..|.. -|.-+ ++|+.+..--|.++-+. +....
T Consensus 98 Dn~L~lWny~~~------~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iq-----hlLvvaT~~ei~ilgV~~~~~~~~~~ 166 (1311)
T KOG1900|consen 98 DNNLFLWNYESD------NELAEYDGLSHTILKVGLVKPKPGVFVPEIQ-----HLLVVATPVEIVILGVSFDEFTGELS 166 (1311)
T ss_pred CCeEEEEEcCCC------CccccccchhhhheeeeeecCCCCcchhhhh-----eeEEecccceEEEEEEEeccccCccc
Confidence 778999999975 445556555666665543 22221 23333332224443322 11111
Q ss_pred e----eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc--Ccc------ccceEEEe-cCCC
Q 008363 270 L----WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA--GTK------QQGLHLVN-CSSF 336 (568)
Q Consensus 270 ~----~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~--~~~------~~~l~~~~-~h~~ 336 (568)
. ..+....-.|+++....+|+.+++ |.|| .||.+.....+.-...++-+ -++ ...+..+. .+..
T Consensus 167 ~f~~~~~i~~dg~~V~~I~~t~nGRIF~~-G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~d 243 (1311)
T KOG1900|consen 167 IFNTSFKISVDGVSVNCITYTENGRIFFA-GRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKD 243 (1311)
T ss_pred ccccceeeecCCceEEEEEeccCCcEEEe-ecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCC
Confidence 1 222233456789998888885555 5556 45554322211000000000 000 00122233 5677
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|..+.....-..|.+-+.-|+|.+|++..
T Consensus 244 pI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 244 PIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeEeccccceeeeeccCceEEEEEccC
Confidence 999999987778999999999999999976
No 450
>PHA02790 Kelch-like protein; Provisional
Probab=74.17 E-value=1.3e+02 Score=32.16 Aligned_cols=146 Identities=6% Similarity=-0.067 Sum_probs=67.4
Q ss_pred CCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---C-EEEEECCC
Q 008363 192 PHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---G-LKFWDIRD 265 (568)
Q Consensus 192 ~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---~-v~lwD~~~ 265 (568)
++.+.+.|+.++ ++..||..+..+ ..+..+....... +++ .-++ .+++.||.+ . +..||.++
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W----~~~~~l~~~r~~~-~~~-~~~g------~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAW----VNMPSLLKPRCNP-AVA-SINN------VIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeE----EECCCCCCCCccc-EEE-EECC------EEEEecCcCCCCccEEEEeCCC
Confidence 567778887643 577788765433 2222221111111 222 2234 677777754 3 77888876
Q ss_pred CCcce-eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363 266 PFRPL-WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS 344 (568)
Q Consensus 266 ~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s 344 (568)
..... ..+. ....-.+++ .-+++..+.|+ .+.+||... ++. ..+..+.........+.
T Consensus 386 ~~W~~~~~m~-~~r~~~~~~-~~~~~IYv~GG---~~e~ydp~~--------~~W------~~~~~m~~~r~~~~~~v-- 444 (480)
T PHA02790 386 DQWQFGPSTY-YPHYKSCAL-VFGRRLFLVGR---NAEFYCESS--------NTW------TLIDDPIYPRDNPELII-- 444 (480)
T ss_pred CEEEeCCCCC-CccccceEE-EECCEEEEECC---ceEEecCCC--------CcE------eEcCCCCCCccccEEEE--
Confidence 53111 1111 111111222 22455555553 467788742 221 11111111111111222
Q ss_pred cCCCEEEEEeCC-----CeEEEEEcCCCeee
Q 008363 345 RLTGMVAYCSAD-----GTVHRFQLTAKAVE 370 (568)
Q Consensus 345 p~~~~l~s~s~D-----g~v~iwd~~~~~~~ 370 (568)
-++++.+.||.+ ..+..||..+.++.
T Consensus 445 ~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 445 VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred ECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 256777777754 35777777666553
No 451
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.92 E-value=74 Score=31.17 Aligned_cols=97 Identities=18% Similarity=0.304 Sum_probs=55.7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEe------CCCeEEEEEccCCCCCCCCceeEEeeC-----CCCCeeEEEEccCCCCC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGC------HDGTVALWKFVASDSSIDSRPLLCFSA-----DTLPIRAVSWAPAESDS 244 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs------~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~~V~~v~~~p~~~~~ 244 (568)
+-.+.| ++|.|. .+.+++++|. ....+..||+....+ ..+.+ -.++|..+.+....
T Consensus 34 ~i~G~V-~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-------~~~~~~~s~~ipgpv~a~~~~~~d--- 100 (281)
T PF12768_consen 34 GISGTV-TDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-------SSLGGGSSNSIPGPVTALTFISND--- 100 (281)
T ss_pred CceEEE-EEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCee-------eecCCcccccCCCcEEEEEeeccC---
Confidence 345667 999997 5555666664 356788999886633 22222 24678888775443
Q ss_pred CCCcEEEEEc-CC--C-EEEEECCCCCcceee-eCCCCCCeEEEEEcC
Q 008363 245 DSANVILTAG-HG--G-LKFWDIRDPFRPLWD-IHPAPKFIYGLDWLP 287 (568)
Q Consensus 245 ~~~~~las~s-~d--~-v~lwD~~~~~~~~~~-~~~h~~~i~~l~~sp 287 (568)
..++++.|. .+ . |..||-... ..+.. .......|..+.+.|
T Consensus 101 -~~~~~~aG~~~~g~~~l~~~dGs~W-~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 101 -GSNFWVAGRSANGSTFLMKYDGSSW-SSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred -CceEEEeceecCCCceEEEEcCCce-EeccccccCCCCEEEEEEEEe
Confidence 124555553 22 3 888876655 33322 222244566666554
No 452
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.81 E-value=1e+02 Score=32.47 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=36.5
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-ceeee----C-CCCCCeEEEEEcCCC
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-PLWDI----H-PAPKFIYGLDWLPDP 289 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-~~~~~----~-~h~~~i~~l~~sp~~ 289 (568)
-...+.|+|.|++ .+|++--..+ |++++..+... .+..+ . ...+....|+++|+-
T Consensus 29 L~~Pw~maflPDG------~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGPDN------QLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcCCC------eEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 4457899999998 7888776445 88887654321 22111 1 125668899999985
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=73.74 E-value=1.2e+02 Score=31.52 Aligned_cols=111 Identities=13% Similarity=0.127 Sum_probs=58.2
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
..+ +.+.|. +++.+++++ .+|.+.. ....+... ....+..... -...+.++.|.+++ ..+++|..+
T Consensus 281 ~~l-~~v~~~--~dg~l~l~g-~~G~l~~-S~d~G~~~-~~~~f~~~~~~~~~~~l~~v~~~~d~------~~~a~G~~G 348 (398)
T PLN00033 281 RRI-QNMGWR--ADGGLWLLT-RGGGLYV-SKGTGLTE-EDFDFEEADIKSRGFGILDVGYRSKK------EAWAAGGSG 348 (398)
T ss_pred cce-eeeeEc--CCCCEEEEe-CCceEEE-ecCCCCcc-cccceeecccCCCCcceEEEEEcCCC------cEEEEECCC
Confidence 345 788887 777666655 5666543 33332100 0001222211 12348899999887 566665554
Q ss_pred CEEEEECCCCCcceee---eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363 257 GLKFWDIRDPFRPLWD---IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 257 ~v~lwD~~~~~~~~~~---~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw 304 (568)
.+.... ..+ +.-.. ...-...++.+.|.++++.+ +.+.+|.|.-|
T Consensus 349 ~v~~s~-D~G-~tW~~~~~~~~~~~~ly~v~f~~~~~g~-~~G~~G~il~~ 396 (398)
T PLN00033 349 ILLRST-DGG-KSWKRDKGADNIAANLYSVKFFDDKKGF-VLGNDGVLLRY 396 (398)
T ss_pred cEEEeC-CCC-cceeEccccCCCCcceeEEEEcCCCceE-EEeCCcEEEEe
Confidence 344432 222 22111 12234567899998776644 44567776543
No 454
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=71.67 E-value=53 Score=33.07 Aligned_cols=112 Identities=12% Similarity=0.214 Sum_probs=56.3
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeee----CCCCCCeEEEEEcCC---CCEEEEEeC-----
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDI----HPAPKFIYGLDWLPD---PGCVILSFD----- 297 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~----~~h~~~i~~l~~sp~---~~~l~s~~~----- 297 (568)
.++|+|.|++ .+|++-- .+ |++++..... ..+..+ .........++++|+ ..+|++...
T Consensus 4 P~~~a~~pdG------~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 4 PRSMAFLPDG------RLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp EEEEEEETTS------CEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred ceEEEEeCCC------cEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 5789999998 7888766 55 9999933221 123222 233556799999995 234444322
Q ss_pred --CC--cEEEEEccccccCCCCCCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeCCCe
Q 008363 298 --DG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 298 --dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
.. .|.-|.+... ...+ ......+..+.. .......|.|.|+|.+.++.+..+.
T Consensus 77 ~~~~~~~v~r~~~~~~-------~~~~-~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDG-------DGDL-SSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp SSSEEEEEEEEEEETT-------SCEE-EEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred CCCcceeeEEEeccCC-------cccc-ccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 12 2333333210 0000 000011122222 2334567999999977777775554
No 455
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=69.79 E-value=2.1e+02 Score=32.84 Aligned_cols=155 Identities=8% Similarity=0.073 Sum_probs=95.7
Q ss_pred eEEEEccCCC-CCEEEEEeC----------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 183 LTMEWSTSPP-HDYLLAGCH----------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 183 ~~v~~s~~~~-g~~l~sgs~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.++.|. .| +.++++|.. .|.|.|+.+.... ..+.+.... -.+.+.++.-- +| +++|
T Consensus 778 ~s~~~~--~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~---~L~~v~e~~-v~Gav~aL~~f-ng------kllA 844 (1096)
T KOG1897|consen 778 ISCKFT--DDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN---SLELVAETV-VKGAVYALVEF-NG------KLLA 844 (1096)
T ss_pred eeeeec--CCCceEEEEEEEeeccCCCCcccceEEEEEEecCC---ceeeeeeee-eccceeehhhh-CC------eEEE
Confidence 444565 34 567777753 4778888877520 123333221 24556655432 23 4555
Q ss_pred EEcCCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 252 TAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 252 s~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+- .-.|++|+.... +.++.-..|..++..+...-.|..|++|..-+.|.+...+... |...- ..-
T Consensus 845 ~I-n~~vrLye~t~~-~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e------g~f~e-------vAr 909 (1096)
T KOG1897|consen 845 GI-NQSVRLYEWTTE-RELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE------GNFEE-------VAR 909 (1096)
T ss_pred ec-CcEEEEEEcccc-ceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC------CceEE-------eeh
Confidence 43 223999998876 6666666778888999998899999999888888877665422 33320 112
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..+...++++.+-.+ ..++.+..+|.+.+-...+
T Consensus 910 D~~p~Wmtaveil~~-d~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 910 DYNPNWMTAVEILDD-DTYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred hhCccceeeEEEecC-ceEEeecccccEEEEEecC
Confidence 345566777776544 4455666788888877653
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=69.50 E-value=20 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.018 Sum_probs=19.5
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeC-C--CeEEEE
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSA-D--GTVHRF 362 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~-D--g~v~iw 362 (568)
......-....|+|+|+.|+.++. + |...||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334556678899999987776653 4 555554
No 457
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.45 E-value=1.4e+02 Score=35.39 Aligned_cols=75 Identities=11% Similarity=0.231 Sum_probs=51.6
Q ss_pred CCCCeeEEEEccCCCCCCCCcEEEEEcCCCEE--EEECCCCC---cc----------------eeeeC-CCCCCeEEEEE
Q 008363 228 DTLPIRAVSWAPAESDSDSANVILTAGHGGLK--FWDIRDPF---RP----------------LWDIH-PAPKFIYGLDW 285 (568)
Q Consensus 228 h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~--lwD~~~~~---~~----------------~~~~~-~h~~~i~~l~~ 285 (568)
....|++|....+| ++|.+|-+|+|+ +|....+. ++ +..+. .+.++|..+..
T Consensus 177 dg~~V~~I~~t~nG------RIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I 250 (1311)
T KOG1900|consen 177 DGVSVNCITYTENG------RIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI 250 (1311)
T ss_pred CCceEEEEEeccCC------cEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe
Confidence 35568899988887 788887777533 22222110 00 11222 56778999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccc
Q 008363 286 LPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 286 sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
......|++-+..|+|.+||+..
T Consensus 251 D~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 251 DNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ccccceeeeeccCceEEEEEccC
Confidence 98888888999999999999943
No 458
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=66.41 E-value=2.4e+02 Score=32.19 Aligned_cols=126 Identities=17% Similarity=0.251 Sum_probs=72.9
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee--eEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM--KAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+|+|+|... ..||+....|...||++...... ..+.......| .+ +.+. ..+ ..-
T Consensus 150 Dv~FnP~~~---------~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~g----si-~~d~-------~e~-s~w- 206 (765)
T PF10214_consen 150 DVAFNPWDQ---------RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISG----SI-IFDP-------EEL-SNW- 206 (765)
T ss_pred eEEeccCcc---------ceEEEEeccCcEEEEEeccccccCCcceeeccCCCc----cc-cCCC-------ccc-Ccc-
Confidence 899999876 79999999999999999321111 11100000001 11 0000 112 222
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD 262 (568)
..+.|. ++...|++++. ..+.++|+.+... ..+.........|.++.-++... ...|+-++ -.|...|
T Consensus 207 ~rI~W~--~~~~~lLv~~r-~~l~~~d~~~~~~----~~~l~~~~~~~~IlDv~~~~~~~----~~~FiLTs-~eiiw~~ 274 (765)
T PF10214_consen 207 KRILWV--SDSNRLLVCNR-SKLMLIDFESNWQ----TEYLVTAKTWSWILDVKRSPDNP----SHVFILTS-KEIIWLD 274 (765)
T ss_pred eeeEec--CCCCEEEEEcC-CceEEEECCCCCc----cchhccCCChhheeeEEecCCcc----ceEEEEec-CeEEEEE
Confidence 578998 56667777774 5789999986622 11122223456788998888831 13333332 2388888
Q ss_pred CCC
Q 008363 263 IRD 265 (568)
Q Consensus 263 ~~~ 265 (568)
+..
T Consensus 275 ~~~ 277 (765)
T PF10214_consen 275 VKS 277 (765)
T ss_pred ccC
Confidence 887
No 459
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=66.24 E-value=2.4e+02 Score=32.12 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=73.5
Q ss_pred CeeEEEEccCCC-CCCCCcEEEEEc-CC---C-EEEEECCCCCcceeeeC-------------------------CCCCC
Q 008363 231 PIRAVSWAPAES-DSDSANVILTAG-HG---G-LKFWDIRDPFRPLWDIH-------------------------PAPKF 279 (568)
Q Consensus 231 ~V~~v~~~p~~~-~~~~~~~las~s-~d---~-v~lwD~~~~~~~~~~~~-------------------------~h~~~ 279 (568)
.++.+.|-+... .+..+.++++.+ .+ . |.-|.++.....+.... .....
T Consensus 182 ~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~ 261 (753)
T PF11635_consen 182 QLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKR 261 (753)
T ss_pred cceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCe
Confidence 466777765111 122455666654 23 3 99999876532221110 12345
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC--CCCCccCccccceE-------EEecCCCCEEEEEEecCCCEE
Q 008363 280 IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA--TGKPFAGTKQQGLH-------LVNCSSFAIWSVQVSRLTGMV 350 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~--~g~~~~~~~~~~l~-------~~~~h~~~V~~l~~sp~~~~l 350 (568)
|.+++...-+.+++....||+|.++|..++..-.+. .+... ..+. .|. +-..+..++|||.+-.+
T Consensus 262 V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~-----~~v~s~~~~Gf~fp-~~~~~~~vafSPt~c~~ 335 (753)
T PF11635_consen 262 VVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP-----NTVTSLFQAGFHFP-CIQPPLHVAFSPTMCSL 335 (753)
T ss_pred EEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc-----cccccccccccccc-cCCCCceEEECcccceE
Confidence 677777777888999999999999998776321111 01110 1011 111 11245568999999999
Q ss_pred EEEeCCCeEE
Q 008363 351 AYCSADGTVH 360 (568)
Q Consensus 351 ~s~s~Dg~v~ 360 (568)
+.-..||.+.
T Consensus 336 v~~~~~~~~~ 345 (753)
T PF11635_consen 336 VQIDEDGKTK 345 (753)
T ss_pred EEEecCCCce
Confidence 9999999966
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=66.15 E-value=70 Score=31.36 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=33.6
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe------CCCcEEEEEccc
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF------DDGAMRIVSLLK 308 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~------~dg~I~lwd~~~ 308 (568)
|++||..+. +-.....+-.+.|+.|.|..+.+.++.|. ....+..||+.+
T Consensus 18 lC~yd~~~~-qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~ 73 (281)
T PF12768_consen 18 LCLYDTDNS-QWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKN 73 (281)
T ss_pred EEEEECCCC-EeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCC
Confidence 999998765 22222233467899999986666666663 245678888854
No 461
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=65.07 E-value=26 Score=38.14 Aligned_cols=34 Identities=21% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCEEEEEEec----CCCEEEEEeCCCeEEEEEcCCCee
Q 008363 336 FAIWSVQVSR----LTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 336 ~~V~~l~~sp----~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..+..++++. +..+|++.+.|+.||+||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455666666 568999999999999999999887
No 462
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=63.88 E-value=29 Score=37.77 Aligned_cols=71 Identities=17% Similarity=0.253 Sum_probs=40.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-Eee--------------------CCCCCeeEEEEcc----CCCCCCC
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFS--------------------ADTLPIRAVSWAP----AESDSDS 246 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~--------------------~h~~~V~~v~~~p----~~~~~~~ 246 (568)
+...|+.+..||.+........... ...... .+. .....+..++++. ..
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~-~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 230 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSD-GSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD----- 230 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----S-SS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT-----
T ss_pred CCCEEEEEECCCCeEEEECCcccCC-CCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC-----
Confidence 4568888899999988887642100 000000 000 0123455566665 33
Q ss_pred CcEEEEEcCCC-EEEEECCCCCcce
Q 008363 247 ANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 247 ~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
.++++.+.|+ +|+||+.+. .++
T Consensus 231 -~~l~tl~~D~~LRiW~l~t~-~~~ 253 (547)
T PF11715_consen 231 -TFLFTLSRDHTLRIWSLETG-QCL 253 (547)
T ss_dssp -TEEEEEETTSEEEEEETTTT-CEE
T ss_pred -CEEEEEeCCCeEEEEECCCC-eEE
Confidence 7999999999 999999988 554
No 463
>PRK10115 protease 2; Provisional
Probab=62.84 E-value=2.6e+02 Score=31.41 Aligned_cols=197 Identities=8% Similarity=-0.017 Sum_probs=93.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCC-C----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-G----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d-g----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+..+.|+|++ ++||.+... | .|++-|+.++..+... ..
T Consensus 128 ~l~~~~~Spdg----------~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--------------------------i~ 171 (686)
T PRK10115 128 TLGGMAITPDN----------TIMALAEDFLSRRQYGIRFRNLETGNWYPEL--------------------------LD 171 (686)
T ss_pred EEeEEEECCCC----------CEEEEEecCCCcEEEEEEEEECCCCCCCCcc--------------------------cc
Confidence 44468899999 677765432 2 5777888776433111 11
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCC------CeEEEEEccCCCCCCCCceeEEeeCCCCCee-EEEEccCCCCCCCCcE
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHD------GTVALWKFVASDSSIDSRPLLCFSADTLPIR-AVSWAPAESDSDSANV 249 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~~~~~~ 249 (568)
.. ...++|. ++++.|+....+ ..|..+++.+... .....+........ .+..+.++ .+
T Consensus 172 --~~-~~~~~w~--~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~----~d~lv~~e~~~~~~~~~~~s~d~------~~ 236 (686)
T PRK10115 172 --NV-EPSFVWA--NDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS----QDELVYEEKDDTFYVSLHKTTSK------HY 236 (686)
T ss_pred --Cc-ceEEEEe--eCCCEEEEEEecCCCCCCCEEEEEECCCChh----HCeEEEeeCCCCEEEEEEEcCCC------CE
Confidence 11 1458998 777666554432 2566777765511 22233433233333 22333355 44
Q ss_pred -EEEEcC--CC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCc
Q 008363 250 -ILTAGH--GG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 250 -las~s~--d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
++.... +. +.+++..... .....+..-.+....+. +..+.+++.... ....+|+.+.-.. .++.
T Consensus 237 l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~-----~~~~---- 306 (686)
T PRK10115 237 VVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD-----EQQW---- 306 (686)
T ss_pred EEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC-----cccC----
Confidence 333332 34 8999853321 22211211122223332 223333333322 2233444332100 1111
Q ss_pred cccceEEEecC-C-CCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 324 KQQGLHLVNCS-S-FAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 324 ~~~~l~~~~~h-~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..+..+ . ..|..+.+. ...++++...+|.-+++-+.
T Consensus 307 -----~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 307 -----EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred -----eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence 234444 3 367778887 34566667777776666553
No 464
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=62.13 E-value=1.8e+02 Score=29.20 Aligned_cols=104 Identities=12% Similarity=0.176 Sum_probs=59.7
Q ss_pred eEEEEccCCCCCEEEEEeCCCe------EEEEEccCCCC-CCCCcee--EEeeCCCC--------CeeEEEEccCCCCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGT------VALWKFVASDS-SIDSRPL--LCFSADTL--------PIRAVSWAPAESDSD 245 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~------I~iwd~~~~~~-~~~~~~~--~~~~~h~~--------~V~~v~~~p~~~~~~ 245 (568)
..|.|. +++..+++-+.+|. +..+++..... ....... ..+..-.+ ..-+|++.+++
T Consensus 23 Sgl~~~--~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g---- 96 (326)
T PF13449_consen 23 SGLDYD--PDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDG---- 96 (326)
T ss_pred eeEEEe--CCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCC----
Confidence 677877 45567777788888 66666553100 0000111 11111111 33478887776
Q ss_pred CCcEEEEEcCC------C-EEEEECCCCCcceeee---------------CCCCCCeEEEEEcCCCCEEEEEe
Q 008363 246 SANVILTAGHG------G-LKFWDIRDPFRPLWDI---------------HPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 246 ~~~~las~s~d------~-v~lwD~~~~~~~~~~~---------------~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
.++++.-.+ . |+-+|.. + +....+ ........+|+++|+|+.|+++.
T Consensus 97 --~~~is~E~~~~~~~~p~I~~~~~~-G-~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 97 --SFWISSEGGRTGGIPPRIRRFDLD-G-RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred --CEEEEeCCccCCCCCCEEEEECCC-C-cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 677777666 6 8888866 3 222111 12345678999999999777663
No 465
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=58.62 E-value=3.7e+02 Score=31.78 Aligned_cols=113 Identities=15% Similarity=0.148 Sum_probs=58.7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
...+.| ..++=- +| +|++|. ..+|.||++..... ...+..+ .-+++-....--. ++|..|.-
T Consensus 1095 E~KGtV-savceV---~G-~l~~~~-GqKI~v~~l~r~~~---ligVaFi---D~~~yv~s~~~vk------nlIl~gDV 1156 (1366)
T KOG1896|consen 1095 EQKGTV-SAVCEV---RG-HLLSSQ-GQKIIVRKLDRDSE---LIGVAFI---DLPLYVHSMKVVK------NLILAGDV 1156 (1366)
T ss_pred hcccce-EEEEEe---cc-EEEEcc-CcEEEEEEeccCCc---ceeeEEe---ccceeEEehhhhh------hheehhhh
Confidence 345566 555422 45 666665 45799999943311 1222222 1122222222223 45555544
Q ss_pred CC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCE--EEEEeCCCcEEEEEc
Q 008363 256 GG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGC--VILSFDDGAMRIVSL 306 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~--l~s~~~dg~I~lwd~ 306 (568)
-. |.+.-.......+..+. ...-.++++.|.-+|.. ++++..|+.|++|-.
T Consensus 1157 ~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred hhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence 44 66655544323332222 12334788888888764 455667999988865
No 466
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=56.53 E-value=1.9e+02 Score=27.90 Aligned_cols=109 Identities=10% Similarity=0.028 Sum_probs=65.2
Q ss_pred eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363 183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v 258 (568)
-.+.|. .+|.++-+.+.-| .|+.+|+.++ +.+.... ...----.|+...+ .++.-.-..+ .
T Consensus 48 QGL~~~--~~g~LyESTG~yG~S~l~~~d~~tg------~~~~~~~l~~~~FgEGit~~~d-------~l~qLTWk~~~~ 112 (264)
T PF05096_consen 48 QGLEFL--DDGTLYESTGLYGQSSLRKVDLETG------KVLQSVPLPPRYFGEGITILGD-------KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--ETTEEEEEECSTTEEEEEEEETTTS------SEEEEEE-TTT--EEEEEEETT-------EEEEEESSSSEE
T ss_pred ccEEec--CCCEEEEeCCCCCcEEEEEEECCCC------cEEEEEECCccccceeEEEECC-------EEEEEEecCCeE
Confidence 456664 4777778877777 6899999877 4333221 11222234444444 4555555666 9
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccc
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
.+||..+- ..+..+. ..+.-..|+ .|+..|+.+.....|+++|..++.
T Consensus 113 f~yd~~tl-~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~ 160 (264)
T PF05096_consen 113 FVYDPNTL-KKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFK 160 (264)
T ss_dssp EEEETTTT-EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred EEEccccc-eEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccc
Confidence 99999875 6665553 233446666 457788888777889999986543
No 467
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=56.45 E-value=2.5e+02 Score=33.09 Aligned_cols=148 Identities=11% Similarity=0.122 Sum_probs=83.4
Q ss_pred CEEEEEeC---------CCeEEEEEccC-----CCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE
Q 008363 194 DYLLAGCH---------DGTVALWKFVA-----SDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGGL 258 (568)
Q Consensus 194 ~~l~sgs~---------Dg~I~iwd~~~-----~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v 258 (568)
.+|++|.. -|.+.|+|+-. +++....+....+ ....++|..++ .-.| +|+++..-+|
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavc-eV~G-------~l~~~~GqKI 1118 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVC-EVRG-------HLLSSQGQKI 1118 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEE-Eecc-------EEEEccCcEE
Confidence 37777753 48899999853 2111111221122 23467777665 4444 6777766669
Q ss_pred EEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--C
Q 008363 259 KFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--S 334 (568)
Q Consensus 259 ~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h 334 (568)
.+|++.... .++..+ .-+++-....--.++|+.|.--..|.+.-... ++ ..+..+.. .
T Consensus 1119 ~v~~l~r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqe---------ep------~rlsL~srd~~ 1180 (1366)
T KOG1896|consen 1119 IVRKLDRDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQE---------EP------YRLSLLSRDFE 1180 (1366)
T ss_pred EEEEeccCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEcc---------Cc------eEEEEeecCCc
Confidence 999994331 222222 22233333333356777776666677665532 11 11222221 1
Q ss_pred CCCEEEEEEecCC--CEEEEEeCCCeEEEEEcCCC
Q 008363 335 SFAIWSVQVSRLT--GMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 335 ~~~V~~l~~sp~~--~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.-.++++.|--+| -+++++..|++|++|-+...
T Consensus 1181 ~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe 1215 (1366)
T KOG1896|consen 1181 PLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPE 1215 (1366)
T ss_pred hhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCC
Confidence 2357788888886 46788889999999987643
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=56.36 E-value=2.4e+02 Score=28.87 Aligned_cols=38 Identities=11% Similarity=-0.052 Sum_probs=20.6
Q ss_pred EEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 359 VHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 359 v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
+.+||+.+.++.... ..+.+...+.++..++..++++.
T Consensus 314 ~e~yd~~~~~W~~~~-~lp~~r~~~~av~~~~~iyv~GG 351 (376)
T PRK14131 314 DEIYALVNGKWQKVG-ELPQGLAYGVSVSWNNGVLLIGG 351 (376)
T ss_pred hheEEecCCcccccC-cCCCCccceEEEEeCCEEEEEcC
Confidence 457888877765442 22333333345555665555553
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.71 E-value=51 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=20.1
Q ss_pred CCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC
Q 008363 191 PPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA 227 (568)
Q Consensus 191 ~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 227 (568)
|++++|+++. .+++|.++|..+. ..+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~------~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATN------KVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCC------eEEEEEEC
Confidence 3556555544 5889999998755 55555544
No 470
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=55.49 E-value=3e+02 Score=29.77 Aligned_cols=25 Identities=8% Similarity=-0.045 Sum_probs=19.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKA 147 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~ 147 (568)
..++.++.|+.|.-.|..+|+.+-.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEee
Confidence 3577788899999999999887644
No 471
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=55.44 E-value=61 Score=33.48 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=77.7
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCee-EEEEccCCCCCCCCcEEEEEcCCC-EEEE-ECCCC
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIR-AVSWAPAESDSDSANVILTAGHGG-LKFW-DIRDP 266 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~-~v~~~p~~~~~~~~~~las~s~d~-v~lw-D~~~~ 266 (568)
|+|+.|..-+. .++.++++........ +.+..-.+. ...|+ .+..-..+ .-+..++.|| |.-| |++..
T Consensus 230 Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg------~SLLv~~~dG~vsQWFdvr~~ 301 (733)
T COG4590 230 PDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGG------FSLLVVHEDGLVSQWFDVRRD 301 (733)
T ss_pred CCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCc------eeEEEEcCCCceeeeeeeecC
Confidence 88887766654 5788888875532100 111110110 00111 11112223 4566677777 6655 77755
Q ss_pred Ccce----eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363 267 FRPL----WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ 342 (568)
Q Consensus 267 ~~~~----~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~ 342 (568)
..+. +.+.-....+..+.-....+.+++-...|++.++.... .++ -.+..--..+.-++
T Consensus 302 ~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~--------~~~---------lL~~~~~~~~~~~~ 364 (733)
T COG4590 302 GQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS--------EKL---------LLFERAYQAPQLVA 364 (733)
T ss_pred CCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc--------Ccc---------eehhhhhcCcceee
Confidence 3322 11111122333332222345566667778877775521 111 12222223556789
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 343 VSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
+||.+.+|++-. .|.++++.+++..
T Consensus 365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 365 MSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred eCcccchheeec-CCceEEEEecCCC
Confidence 999998887754 5789999987653
No 472
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=53.98 E-value=3.9e+02 Score=30.55 Aligned_cols=116 Identities=12% Similarity=0.167 Sum_probs=72.6
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC----------CCeeEEEEccCCCCCCCCcEEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT----------LPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----------~~V~~v~~~p~~~~~~~~~~las 252 (568)
..|+|+|... ..||+....|.-.||++...... ....+.....+. +.-..|.|.++. +.|+.
T Consensus 149 aDv~FnP~~~-~q~AiVD~~G~Wsvw~i~~~~~~-~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~------~~lLv 220 (765)
T PF10214_consen 149 ADVAFNPWDQ-RQFAIVDEKGNWSVWDIKGRPKR-KSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS------NRLLV 220 (765)
T ss_pred ceEEeccCcc-ceEEEEeccCcEEEEEecccccc-CCcceeeccCCCccccCCCcccCcceeeEecCCC------CEEEE
Confidence 5788887744 49999999999999999211110 001111111111 223478898876 78888
Q ss_pred EcCCCEEEEECCCCCcce-eeeCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEccc
Q 008363 253 AGHGGLKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPD--PGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 253 ~s~d~v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~I~lwd~~~ 308 (568)
++...+.++|+.+....- .........|..+.-+|. ...++..+ ..|...|+..
T Consensus 221 ~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 221 CNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred EcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 888889999999774311 222234567888888887 34444433 5677778754
No 473
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.75 E-value=3.6e+02 Score=30.12 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 278 KFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 278 ~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
+.+..+..||+.++|+.=...|.|.+-+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 557788999999999999999999888763
No 474
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=53.51 E-value=7.5 Score=34.69 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=16.2
Q ss_pred eeEEecCccceEEEeeee
Q 008363 537 RWLCYGGAGGIIRCQEIR 554 (568)
Q Consensus 537 ~~l~~~~~~g~~r~~~~~ 554 (568)
.|||-|++||+.+||++.
T Consensus 44 sl~C~g~~CGly~CeD~~ 61 (211)
T TIGR02269 44 SLACAGGQCGLYVCEDVA 61 (211)
T ss_pred EEEecCCcceeEEecccc
Confidence 489999999999999864
No 475
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=53.09 E-value=2.5e+02 Score=29.29 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..|..++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999974
No 476
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=52.45 E-value=2.2e+02 Score=27.25 Aligned_cols=108 Identities=19% Similarity=0.254 Sum_probs=58.2
Q ss_pred CCCCEEEEEeC-C--CeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECC
Q 008363 191 PPHDYLLAGCH-D--GTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIR 264 (568)
Q Consensus 191 ~~g~~l~sgs~-D--g~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~ 264 (568)
++|++|.+|+. | ..+++++........+.... ..+ ....+-.++..-++| ++|+.|+... ..+|.-.
T Consensus 76 ~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m-~~~RWYpT~~~L~DG------~vlIvGG~~~~t~E~~P~~ 148 (243)
T PF07250_consen 76 PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM-QSGRWYPTATTLPDG------RVLIVGGSNNPTYEFWPPK 148 (243)
T ss_pred CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc-cCCCccccceECCCC------CEEEEeCcCCCcccccCCc
Confidence 78999999875 2 34778875431000000000 011 123334455567888 7888888775 6777764
Q ss_pred CCC-ccee--eeCC----CCCCe-EEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 265 DPF-RPLW--DIHP----APKFI-YGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 265 ~~~-~~~~--~~~~----h~~~i-~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
... .... .+.. ..... -.+...|+|+.++.+..+.. |||..
T Consensus 149 ~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~--i~d~~ 197 (243)
T PF07250_consen 149 GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSI--IYDYK 197 (243)
T ss_pred cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcE--EEeCC
Confidence 321 1111 1110 11111 25677899998888876544 46763
No 477
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=50.83 E-value=2.1e+02 Score=29.52 Aligned_cols=130 Identities=16% Similarity=0.313 Sum_probs=68.9
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE------cCCC-EEEEECCCC
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA------GHGG-LKFWDIRDP 266 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~------s~d~-v~lwD~~~~ 266 (568)
+.+..-+.-+.|-+|+..+... ....+...+ .-.+...-+.|.+.. ..++.++ .+++ |++||.|+.
T Consensus 236 ~~l~~~s~~~~Igvw~~~t~q~-~d~~~~s~~-dsag~~~kL~w~ng~-----~~li~~~~fp~~~kdN~~i~~~d~Rd~ 308 (465)
T KOG2714|consen 236 TQLVALSSVGKIGVWHAVTQQA-QDVQPISSY-DSAGSFLKLGWLNGS-----NLLIDSQKFPLRMKDNDLIVTEDFRDR 308 (465)
T ss_pred hhhhhccccccccccchhhhce-eeeeeccCc-cccCChhhhccccCc-----eeEEEEeeccccccCCceEEEeeccCC
Confidence 4455556678899999876511 011111111 112334456676654 1333333 2235 999999986
Q ss_pred CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC
Q 008363 267 FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL 346 (568)
Q Consensus 267 ~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~ 346 (568)
. ++..|. .++.++..+.+++-+.-..... .| ...+.++..|..+.
T Consensus 309 n-------------~~~~W~----~i~~gt~~~~vrv~~~~~~~~~---~~-------~~l~~~f~~~~~~L-------- 353 (465)
T KOG2714|consen 309 N-------------TSGNWI----EIAYGTSSGEVRVIDQHPETVG---VG-------PCLFQTFEVHGSPL-------- 353 (465)
T ss_pred C-------------ccceEE----EecCCccccceEeeeccccccC---CC-------CeEEEEEEecCCCc--------
Confidence 3 223343 3455566677777776332211 01 13345666676652
Q ss_pred CCEEEEEeCCCeEEEEEcCC
Q 008363 347 TGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 347 ~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+ ++-.+...+.+++|.+..
T Consensus 354 ~-~idv~~~~~~~~~~~~tr 372 (465)
T KOG2714|consen 354 G-LIDVCSDGGHVRVWNSTR 372 (465)
T ss_pred c-eeehhhhCCcceEEeecc
Confidence 1 344455567799998853
No 478
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=49.54 E-value=58 Score=20.75 Aligned_cols=28 Identities=14% Similarity=-0.006 Sum_probs=19.0
Q ss_pred cCCCEEEEE-eCCCeEEEEEcCCCeeecc
Q 008363 345 RLTGMVAYC-SADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 345 p~~~~l~s~-s~Dg~v~iwd~~~~~~~~~ 372 (568)
|++++|+++ -.+++|.++|+.+......
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~ 29 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIAT 29 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEE
Confidence 466655554 4688999999977665443
No 479
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=49.28 E-value=4.9e+02 Score=30.37 Aligned_cols=170 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred eEEEEEccCCCCCCCCceeEEeeCCCC----CeeEEEEccCCCCCCCCcEEEEEcC-----------CC-EEEEECCCCC
Q 008363 204 TVALWKFVASDSSIDSRPLLCFSADTL----PIRAVSWAPAESDSDSANVILTAGH-----------GG-LKFWDIRDPF 267 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~----~V~~v~~~p~~~~~~~~~~las~s~-----------d~-v~lwD~~~~~ 267 (568)
.|++.|..++ ..+..+.-..+ .|.++.|+... ...+++.+.. ++ ++.|++-...
T Consensus 854 ~I~~~d~~s~------~~~~~~~l~~ne~a~~v~~~~fs~~~----~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g 923 (1205)
T KOG1898|consen 854 SIRVFDPKSG------KIICLVELGQNEAAFSVCAVDFSSSE----YQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG 923 (1205)
T ss_pred eEEEEcCCCC------ceEEEEeecCCcchhheeeeeeccCC----CceEEEEEeeccccccccccCCCceEEEEEEecC
Q ss_pred cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE--EEecCCCCEEEEEEec
Q 008363 268 RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH--LVNCSSFAIWSVQVSR 345 (568)
Q Consensus 268 ~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~--~~~~h~~~V~~l~~sp 345 (568)
..+..++.-.-+-.-.+.+|... .+.++-...+++||+ |+. +.++ .++.-...|+.+++
T Consensus 924 ~~lellh~T~~~~~v~Ai~~f~~-~~LagvG~~l~~Ydl----------G~K------~lLRk~e~k~~p~~Is~iqt-- 984 (1205)
T KOG1898|consen 924 DKLELLHKTEIPGPVGAICPFQG-RVLAGVGRFLRLYDL----------GKK------KLLRKCELKFIPNRISSIQT-- 984 (1205)
T ss_pred ceeeeeeccCCCccceEEeccCC-EEEEecccEEEEeeC----------ChH------HHHhhhhhccCceEEEEEee--
Q ss_pred CCCEEEEEeCCCeEEEEEcC-CCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 346 LTGMVAYCSADGTVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 346 ~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
.+..|+.|..--.|.++-.. ...........+.|.+.....-.|..+++.+...+++
T Consensus 985 ~~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~~tvagaDrfGNi 1042 (1205)
T KOG1898|consen 985 YGARIVVGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDYDTVAGADRFGNI 1042 (1205)
T ss_pred cceEEEEeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecCCceeeccccCcE
No 480
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=48.77 E-value=2.7e+02 Score=27.31 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
....++++++|..+++--..+.|..|+...
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 456788999888888888899999999853
No 481
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.66 E-value=2.4e+02 Score=26.30 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=31.0
Q ss_pred EEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCC
Q 008363 196 LLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRD 265 (568)
Q Consensus 196 l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~ 265 (568)
.+-.-.+|...++|.++- +++..+. ..+.=+.++-... +++.+-+.+.+++-|..+
T Consensus 104 y~LTw~egvaf~~d~~t~------~~lg~~~-y~GeGWgLt~d~~-------~LimsdGsatL~frdP~t 159 (262)
T COG3823 104 YQLTWKEGVAFKYDADTL------EELGRFS-YEGEGWGLTSDDK-------NLIMSDGSATLQFRDPKT 159 (262)
T ss_pred EEEEeccceeEEEChHHh------hhhcccc-cCCcceeeecCCc-------ceEeeCCceEEEecCHHH
Confidence 334445778888888755 5555442 2333445543322 466555555577766654
No 482
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=44.95 E-value=5.2e+02 Score=29.46 Aligned_cols=26 Identities=4% Similarity=-0.000 Sum_probs=21.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAI 148 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l 148 (568)
..|+.++.|+.|.-.|..+|+..-.+
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~f 286 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDF 286 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEe
Confidence 37778888999999999998877654
No 483
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=44.67 E-value=3.8e+02 Score=28.58 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=21.2
Q ss_pred CEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeee
Q 008363 337 AIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 337 ~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
.++++.+.+.. .+|+++=.-..|...|..++++.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 57889999954 55555544558888887777655
No 484
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=44.10 E-value=98 Score=34.67 Aligned_cols=143 Identities=11% Similarity=0.097 Sum_probs=80.6
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE--------EEECC
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK--------FWDIR 264 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~--------lwD~~ 264 (568)
-.+.+|+.+|.|.|+.-..... .......+......+.++.+++.. +.+. .-|+ +- .||..
T Consensus 548 PTic~gtq~ssisissss~~s~--ke~~~~~~spe~~~v~~l~~ss~S-------lgag-l~dgt~a~y~rap~gSwd~e 617 (925)
T KOG3522|consen 548 PTICLGTQTSSISISSSSLDSI--KEVTSEPPSPEHESVKLLLFSSGS-------LGAG-LIDGTLAVYGRAPSGSWDGE 617 (925)
T ss_pred CcccccCccceeEEeeccCCcc--cceeccCCCCchhhhhhhhccccc-------cccC-ccCCccccccCCCCCCCCCC
Confidence 3677888889888887552200 011122233334556677766653 2221 1111 11 26655
Q ss_pred CCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEe
Q 008363 265 DPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVS 344 (568)
Q Consensus 265 ~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~s 344 (568)
+... +..-..+|.+++|..| ++.++.+|.|.++...++. ..++. .....|...|+++.+.
T Consensus 618 -p~~~---~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~----~~~~l---------eahqee~~~Vthm~~~ 677 (925)
T KOG3522|consen 618 -PNIS---IPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFI----RSWDL---------EAHQEEAHSVTHMLYL 677 (925)
T ss_pred -Cccc---cccCCccccchhhhhc---eeeeecCCceEEEechhcc----ccchh---------HHHHhhcceEEEEEee
Confidence 2122 2223556788888754 6778889999999886543 11211 2333466789999998
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCC
Q 008363 345 RLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 345 p~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..+-+++..+.| .+++++.++-
T Consensus 678 ~~gVwvafasG~-~~rlfhtetl 699 (925)
T KOG3522|consen 678 DNGVWVAFASGD-EERLFHTETL 699 (925)
T ss_pred CCceEEEEcCCC-EEEEeccccc
Confidence 877777766655 4555555443
No 485
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=43.67 E-value=1.9e+02 Score=33.16 Aligned_cols=100 Identities=18% Similarity=0.145 Sum_probs=0.0
Q ss_pred CCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeCCC-----cEEEEEccccccCCCC
Q 008363 243 DSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDG-----AMRIVSLLKAAYDVPA 315 (568)
Q Consensus 243 ~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~dg-----~I~lwd~~~~~~~~~~ 315 (568)
...+.++....-..+ |.+-|.... .+...-..+..+|.+-+|||||+.|+- .+.++ .|++-|++...
T Consensus 315 ~~f~tkiAfv~~~~~~L~~~D~dG~-n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~----- 388 (912)
T TIGR02171 315 GTYKAKLAFRNDVTGNLAYIDYTKG-ASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG----- 388 (912)
T ss_pred ccceeeEEEEEcCCCeEEEEecCCC-CceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC-----
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCe
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGT 358 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~ 358 (568)
..+-.+..-...|-.-.+.++| ..|+..+.-|.
T Consensus 389 ----------~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 389 ----------SGLVKLPVENAAIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred ----------CCceEeecccccccceEecCCCCeEEEEEcCCCC
No 486
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=43.40 E-value=5.8e+02 Score=29.56 Aligned_cols=112 Identities=9% Similarity=0.081 Sum_probs=64.9
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECCCCCcc
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIRDPFRP 269 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~~~~~~ 269 (568)
+...++.++.++.+...++..... .. .....-...|.|+.++|-+.......++|.|..+. +.+.-+.+....
T Consensus 498 n~sqVvvA~~~~~l~y~~i~~~~l----~e-~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~ 572 (1096)
T KOG1897|consen 498 NASQVVVAGGGLALFYLEIEDGGL----RE-VSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILI 572 (1096)
T ss_pred cceEEEEecCccEEEEEEeeccce----ee-eeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCccee
Confidence 445777777777777777765421 11 11112356799999998863222234888887765 333333322111
Q ss_pred eee-eC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 270 LWD-IH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 270 ~~~-~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
... +. .-+..|--.+|--|..+|+++..||.+.-|-+..
T Consensus 573 ~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 573 THEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 111 11 1233444555666788999999999998776644
No 487
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=42.55 E-value=86 Score=24.69 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=24.2
Q ss_pred CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE
Q 008363 256 GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~ 295 (568)
.| +.-||..+.. . ..+..--..-+.|++++|+.+|+.+
T Consensus 36 ~GRll~ydp~t~~-~-~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 36 TGRLLRYDPSTKE-T-TVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEEEEETTTTE-E-EEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CcCEEEEECCCCe-E-EEehhCCCccCeEEEcCCCCEEEEE
Confidence 46 8889988763 2 1221112345899999999988876
No 488
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=40.87 E-value=2.2e+02 Score=31.85 Aligned_cols=93 Identities=17% Similarity=0.210 Sum_probs=49.8
Q ss_pred EEEEccCCCCCEEEEEeCCCe-----EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGT-----VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL 258 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~-----I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v 258 (568)
.+.|- |.|..+++-..||. |+.+.-+.-. .+..-.. .+-...+..++|+-.. ..+|.+-.+.|
T Consensus 251 ~LSWk--pqgS~~ati~td~~~~S~~ViFfErNGLr---HGef~lr-~~~dEk~~~~~wn~~s------~vlav~~~n~~ 318 (1243)
T COG5290 251 QLSWK--PQGSKYATIGTDGCSTSESVIFFERNGLR---HGEFDLR-VGCDEKAFLENWNLLS------TVLAVAEGNLL 318 (1243)
T ss_pred ccccc--cCCceeeeeccCCCCCcceEEEEccCCcc---cCCcccc-CCchhhhhhhhhhHHH------HHHHHhhcceE
Confidence 38899 88999999876653 4444422110 0111011 1223346667787765 55655555559
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCC
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP 289 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~ 289 (568)
.+|-..+-..-+. ..-.-..+.-+.|+|..
T Consensus 319 ~lwttkNyhWYLK-~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 319 KLWTTKNYHWYLK-VERQIPGISYVKWHPEE 348 (1243)
T ss_pred EEEEccceEEEEE-EeecCCCcceeeecccc
Confidence 9998765422221 11122335667888854
No 489
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=40.40 E-value=30 Score=37.40 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=47.0
Q ss_pred ceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECCCCCc----ceeeeCCC-----CCCeEEEEEcCC
Q 008363 220 RPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIRDPFR----PLWDIHPA-----PKFIYGLDWLPD 288 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~~~~~----~~~~~~~h-----~~~i~~l~~sp~ 288 (568)
..+..|++|..++..++|.+.+ .++++++-.+ |.++.+.-... +...+..| ...|..++|+-.
T Consensus 306 a~i~QfkAhkspiSaLcfdqsg------sllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~ 379 (788)
T KOG2109|consen 306 ADIRQFKAHKSPISALCFDQSG------SLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEV 379 (788)
T ss_pred hhhhheeeecCcccccccccCc------eEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhh
Confidence 5667888999999999999999 7888888876 55544432100 00111111 112345677777
Q ss_pred CCEEEEEeCCC
Q 008363 289 PGCVILSFDDG 299 (568)
Q Consensus 289 ~~~l~s~~~dg 299 (568)
...+..++.+|
T Consensus 380 s~~r~~gsc~G 390 (788)
T KOG2109|consen 380 STIRTAGSCEG 390 (788)
T ss_pred cceEeecccCC
Confidence 77777776655
No 490
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=39.99 E-value=17 Score=36.09 Aligned_cols=20 Identities=40% Similarity=0.918 Sum_probs=15.2
Q ss_pred eccCCCCcceeEEecCccce
Q 008363 528 RWNMNKGSERWLCYGGAGGI 547 (568)
Q Consensus 528 ~wn~~~~~~~~l~~~~~~g~ 547 (568)
-||.--..+-||||||.+|.
T Consensus 312 DfC~~~k~~~wlCygGgaGy 331 (379)
T KOG1432|consen 312 DFCGELKGELWLCYGGGAGY 331 (379)
T ss_pred ceecccCCeEEEEecCCCcc
Confidence 36665556699999999875
No 491
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=39.69 E-value=1.2e+02 Score=23.73 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCEEEEEeC-CCcEEEEEcc
Q 008363 280 IYGLDWLPDPGCVILSFD-DGAMRIVSLL 307 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~-dg~I~lwd~~ 307 (568)
.+.|.++|++++|+.++. .+.|++|..+
T Consensus 56 aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 56 ANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 478999999999988755 7899999874
No 492
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=3.9e+02 Score=26.37 Aligned_cols=162 Identities=12% Similarity=0.064 Sum_probs=93.2
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
++..+.-.+ .+.++.++.+. ...+..+.-++|.|+.++..-..+..
T Consensus 79 l~~~i~~~~-l~~Dv~vse~y------------vyvad~ssGL~IvDIS~P~sP~~~~~--------------------- 124 (370)
T COG5276 79 LLSVINARD-LFADVRVSEEY------------VYVADWSSGLRIVDISTPDSPTLIGF--------------------- 124 (370)
T ss_pred eEEEEehhh-hhheeEecccE------------EEEEcCCCceEEEeccCCCCcceecc---------------------
Confidence 344444444 55588888654 55555667799999998543322100
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..-.+-. +++.. .|++..++..|--+.+.|+..... -.....+.........++.+-+ +-.
T Consensus 125 ---lnt~gya-ygv~v----sGn~aYVadlddgfLivdvsdpss---P~lagrya~~~~d~~~v~ISGn--------~AY 185 (370)
T COG5276 125 ---LNTDGYA-YGVYV----SGNYAYVADLDDGFLIVDVSDPSS---PQLAGRYALPGGDTHDVAISGN--------YAY 185 (370)
T ss_pred ---ccCCceE-EEEEe----cCCEEEEeeccCcEEEEECCCCCC---ceeeeeeccCCCCceeEEEecC--------eEE
Confidence 0000111 44443 388888888666677889876522 1222334333444456666654 433
Q ss_pred EEcCC-CEEEEECCCCCcceeeeCCCCC-CeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 252 TAGHG-GLKFWDIRDPFRPLWDIHPAPK-FIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 252 s~s~d-~v~lwD~~~~~~~~~~~~~h~~-~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
.+..| |+.+-|+.++..|+..-+-..+ .+.++..+++.-+++.. +--+.+-|...
T Consensus 186 vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~ 242 (370)
T COG5276 186 VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSG 242 (370)
T ss_pred EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCC
Confidence 44445 5999999988777644332233 67888888765555443 33455666644
No 493
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=38.82 E-value=80 Score=18.51 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=15.2
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALW 208 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iw 208 (568)
|..|+.. ++|+++++=+....|.++
T Consensus 4 P~gvav~--~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVD--SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEE--TTSEEEEEECCCTEEEEE
T ss_pred CcEEEEe--CCCCEEEEECCCCEEEEC
Confidence 3556655 667666666666666553
No 494
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=37.40 E-value=4.3e+02 Score=26.27 Aligned_cols=124 Identities=12% Similarity=0.130 Sum_probs=73.0
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-CCceeEEeeC-----CCCCeeEEEEccCCCC------CCCCcE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-DSRPLLCFSA-----DTLPIRAVSWAPAESD------SDSANV 249 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~~~-----h~~~V~~v~~~p~~~~------~~~~~~ 249 (568)
++.|+++ |.+.+-++...-+...+||........ ....+..+.. .....+.+.|+..... ...+..
T Consensus 25 ~WGia~~--p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 25 AWGLSYR--PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred cceeEec--CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 4889988 677777777778899999987221110 1122233321 2345788888865410 012344
Q ss_pred EEEEcCCC-EEEEECCCCCc----ceeeeC-CCCCCeE-EEEEcC--CCCEEEEEeC-CCcEEEEEcc
Q 008363 250 ILTAGHGG-LKFWDIRDPFR----PLWDIH-PAPKFIY-GLDWLP--DPGCVILSFD-DGAMRIVSLL 307 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~----~~~~~~-~h~~~i~-~l~~sp--~~~~l~s~~~-dg~I~lwd~~ 307 (568)
|+.+++|+ |.-|...-... ....+. ...+.|+ .+++.. .+.+|+.+.. .++|.+||-.
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 67788888 99998543322 122232 2234553 555554 3677777744 8999999863
No 495
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=35.97 E-value=3.3e+02 Score=28.49 Aligned_cols=108 Identities=16% Similarity=0.187 Sum_probs=63.1
Q ss_pred CCCEEEEEeCCCeEEEE-EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcc
Q 008363 192 PHDYLLAGCHDGTVALW-KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRP 269 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iw-d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~ 269 (568)
.|..|++++.||.|.-| |++.... .....++.++-....+..+. |+. ..+-|++-...| +.++..... +.
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~-p~l~h~R~f~l~pa~~~~l~--pe~----~rkgF~~l~~~G~L~~f~st~~-~~ 350 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQ-PHLNHIRNFKLAPAEVQFLL--PET----NRKGFYSLYRNGTLQSFYSTSE-KL 350 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCC-CcceeeeccccCcccceeec--ccc----ccceEEEEcCCCceeeeecccC-cc
Confidence 46678899999999988 4443211 11222333332233343332 322 236677777777 776655443 33
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
+. +...-..+..+++||.+.+|++- ..|.|+++.+.+.
T Consensus 351 lL-~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 351 LL-FERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred ee-hhhhhcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 31 11122356778999999988774 4577999988653
No 496
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=35.71 E-value=4.4e+02 Score=25.89 Aligned_cols=133 Identities=9% Similarity=0.035 Sum_probs=66.9
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-------------------CCCCeEEEEEcC-
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-------------------APKFIYGLDWLP- 287 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-------------------h~~~i~~l~~sp- 287 (568)
.+.+..+.+............+++=+... |.++|+.++. ..+.++. ..+.+..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~-s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGK-SWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTE-EEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCc-EEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 45577787776430000112333444444 9999999862 2222211 123366667765
Q ss_pred --CCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 288 --DPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 288 --~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
++++|+-....+ .++--....+..... .... .....+..+.........++++++|.++++--..+.|..|+.
T Consensus 139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~-~~~~---~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~ 214 (287)
T PF03022_consen 139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSL-SDAQ---ALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDP 214 (287)
T ss_dssp STTS-EEEEEETT-SEEEEEEHHHHCSTT---HHH----HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEET
T ss_pred CCCccEEEEEeCCCCcEEEEEHHHhhCccc-cccc---cccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeC
Confidence 667777665433 333333322221100 0000 000122333211235567889999999999999999999999
Q ss_pred CC
Q 008363 365 TA 366 (568)
Q Consensus 365 ~~ 366 (568)
.+
T Consensus 215 ~~ 216 (287)
T PF03022_consen 215 DG 216 (287)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 497
>PLN02153 epithiospecifier protein
Probab=35.71 E-value=4.6e+02 Score=26.21 Aligned_cols=184 Identities=4% Similarity=-0.110 Sum_probs=0.0
Q ss_pred ceEEEEccCCCCCEEEEEeCCC-------eEEEEEccCCCCCCCCceeEEeeCCCCC---eeEEEEccCCCCCCCCcEEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDG-------TVALWKFVASDSSIDSRPLLCFSADTLP---IRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h~~~---V~~v~~~p~~~~~~~~~~la 251 (568)
..++... ++.+++.|+.+. .+.+||+.+..+ ..+......... -.+++...+ .+++
T Consensus 25 ~h~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~p~~~~~~~~~~~~~~-------~iyv 90 (341)
T PLN02153 25 SHGIAVV---GDKLYSFGGELKPNEHIDKDLYVFDFNTHTW----SIAPANGDVPRISCLGVRMVAVGT-------KLYI 90 (341)
T ss_pred cceEEEE---CCEEEEECCccCCCCceeCcEEEEECCCCEE----EEcCccCCCCCCccCceEEEEECC-------EEEE
Q ss_pred EEcCC-----C-EEEEECCCCC-cceeeeCC---CCCCeEEEEEcCCCCEEEEEeCC-----------CcEEEEEccccc
Q 008363 252 TAGHG-----G-LKFWDIRDPF-RPLWDIHP---APKFIYGLDWLPDPGCVILSFDD-----------GAMRIVSLLKAA 310 (568)
Q Consensus 252 s~s~d-----~-v~lwD~~~~~-~~~~~~~~---h~~~i~~l~~sp~~~~l~s~~~d-----------g~I~lwd~~~~~ 310 (568)
.|+.+ . +.+||+.+.. ..+..+.. -.......+..-+++.++.|+.+ ..|.+||+..
T Consensus 91 ~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~-- 168 (341)
T PLN02153 91 FGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD-- 168 (341)
T ss_pred ECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC--
Q ss_pred cCCCCCCCCccCccccceEEEecC----CCCEEEEEEecCCCEEEEEeCC-------------CeEEEEEcCCCeeeccC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCS----SFAIWSVQVSRLTGMVAYCSAD-------------GTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h----~~~V~~l~~sp~~~~l~s~s~D-------------g~v~iwd~~~~~~~~~~ 373 (568)
..-..+... ...-......-++++++.++.+ ..|.+||+.+..+.+-.
T Consensus 169 ---------------~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 169 ---------------GKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred ---------------CeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEecc
Q ss_pred C--CCCcceeeeecccCCCCceEEc
Q 008363 374 S--RNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 374 ~--~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
. ..+.+...++....++..++++
T Consensus 234 ~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 234 TTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred ccCCCCCCcceeeeEEECCEEEEEC
No 498
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=35.38 E-value=4.3e+02 Score=25.78 Aligned_cols=194 Identities=13% Similarity=0.061 Sum_probs=0.0
Q ss_pred CCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeC---------CCcEEEEECCCCceeeEEeccCCc
Q 008363 84 PKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---------NGSLEVWEVPLLRTMKAIYLSSMK 154 (568)
Q Consensus 84 ~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---------dg~V~iwd~~~~~~~~~l~~~~~~ 154 (568)
++.....+..+-..|...-.....|.+.| ++-.++.. .+.|++|+...+.--
T Consensus 131 pkt~evt~f~lp~~~a~~nlet~vfD~~G----------~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gp--------- 191 (353)
T COG4257 131 PKTLEVTRFPLPLEHADANLETAVFDPWG----------NLWFTGQIGAYGRLDPARNVISVFPAPQGGGP--------- 191 (353)
T ss_pred CcccceEEeecccccCCCcccceeeCCCc----------cEEEeeccccceecCcccCceeeeccCCCCCC---------
Q ss_pred cCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE
Q 008363 155 EGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA 234 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~ 234 (568)
+.|+-. |+|..-++.-.+..|-..|..+... +.+-.-.+....-+.
T Consensus 192 ----------------------------yGi~at--pdGsvwyaslagnaiaridp~~~~a----ev~p~P~~~~~gsRr 237 (353)
T COG4257 192 ----------------------------YGICAT--PDGSVWYASLAGNAIARIDPFAGHA----EVVPQPNALKAGSRR 237 (353)
T ss_pred ----------------------------cceEEC--CCCcEEEEeccccceEEcccccCCc----ceecCCCcccccccc
Q ss_pred EEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC
Q 008363 235 VSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
+--+|.+ ..-+|....+ +.-+|.....-..+.+.+....-+++.....++.-++-..-|.|.-||.+.
T Consensus 238 iwsdpig------~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~agai~rfdpet----- 306 (353)
T COG4257 238 IWSDPIG------RAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPET----- 306 (353)
T ss_pred cccCccC------cEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCceeecCccc-----
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC 353 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~ 353 (568)
..+..+......+..++..+.+..+-.+
T Consensus 307 ------------a~ftv~p~pr~n~gn~ql~gr~ge~W~~ 334 (353)
T COG4257 307 ------------ARFTVLPIPRPNSGNIQLDGRPGELWFT 334 (353)
T ss_pred ------------ceEEEecCCCCCCCceeccCCCCceeec
No 499
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=34.91 E-value=1.2e+02 Score=34.08 Aligned_cols=145 Identities=19% Similarity=0.255 Sum_probs=78.4
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363 124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG 203 (568)
Q Consensus 124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg 203 (568)
.+.+|+.++.|.|+.-..+.....+... .......+ .++.++ ...+..|.-||
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~----------------------~spe~~~v-~~l~~s----s~Slgagl~dg 601 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEP----------------------PSPEHESV-KLLLFS----SGSLGAGLIDG 601 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccC----------------------CCCchhhh-hhhhcc----ccccccCccCC
Confidence 5677888999999876632111111000 01122333 556654 23566666777
Q ss_pred eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee---CCCCCC
Q 008363 204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI---HPAPKF 279 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~---~~h~~~ 279 (568)
++-.+--.... ..+..+...+.....+|.+.+|..+ +++ ++.|| |.++...+. ...+.+ ..|...
T Consensus 602 t~a~y~rap~g-Swd~ep~~~~~~g~lPvrsla~~ed--------~~w-as~gG~V~vi~~tt~-~~~~~leahqee~~~ 670 (925)
T KOG3522|consen 602 TLAVYGRAPSG-SWDGEPNISIPTGSLPVRSLAFQED--------FVW-ASEGGCVHVIPSTTF-IRSWDLEAHQEEAHS 670 (925)
T ss_pred ccccccCCCCC-CCCCCCccccccCCccccchhhhhc--------eee-eecCCceEEEechhc-cccchhHHHHhhcce
Confidence 76655322111 1223344444445677888887765 333 34455 888887755 222222 244566
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 280 IYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
|+++.+.-.+-+++..+.| .+++++..
T Consensus 671 Vthm~~~~~gVwvafasG~-~~rlfhte 697 (925)
T KOG3522|consen 671 VTHMLYLDNGVWVAFASGD-EERLFHTE 697 (925)
T ss_pred EEEEEeeCCceEEEEcCCC-EEEEeccc
Confidence 8999998777666665544 34444543
No 500
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=34.26 E-value=75 Score=18.99 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.2
Q ss_pred cEEEEEeCCCcEEEEECCCCcee
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTM 145 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~ 145 (568)
+.+++++.+|.|..+|..+|+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 36888889999999999887765
Done!