Query 008363
Match_columns 568
No_of_seqs 706 out of 3813
Neff 9.5
Searched_HMMs 29240
Date Tue Mar 26 00:26:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ynn_A Coatomer subunit beta'; 100.0 3.6E-33 1.2E-37 278.3 37.3 259 92-391 6-283 (304)
2 1vyh_C Platelet-activating fac 100.0 1.7E-33 5.8E-38 293.1 33.8 267 92-402 101-404 (410)
3 3ow8_A WD repeat-containing pr 100.0 1.6E-32 5.6E-37 275.9 32.8 268 95-402 28-314 (321)
4 1got_B GT-beta; complex (GTP-b 100.0 6.5E-32 2.2E-36 273.7 36.8 267 91-402 47-336 (340)
5 3ow8_A WD repeat-containing pr 100.0 5.4E-32 1.8E-36 272.1 34.2 228 94-364 75-319 (321)
6 2pbi_B Guanine nucleotide-bind 100.0 2E-31 6.7E-36 271.8 36.0 270 91-402 56-350 (354)
7 1vyh_C Platelet-activating fac 100.0 3.8E-32 1.3E-36 282.8 29.8 236 92-364 143-409 (410)
8 3iz6_a 40S ribosomal protein R 100.0 7E-32 2.4E-36 277.9 31.4 273 91-404 58-370 (380)
9 4gqb_B Methylosome protein 50; 100.0 1.7E-31 6E-36 270.9 33.4 241 95-402 78-324 (344)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-31 6.6E-36 270.9 32.6 214 92-365 8-224 (345)
11 2pm7_B Protein transport prote 100.0 3.5E-31 1.2E-35 263.0 33.2 252 93-404 3-280 (297)
12 4gqb_B Methylosome protein 50; 100.0 2.3E-31 8E-36 270.0 31.3 204 95-367 123-332 (344)
13 1got_B GT-beta; complex (GTP-b 100.0 1.1E-30 3.9E-35 264.6 33.3 230 91-363 89-340 (340)
14 2j04_B YDR362CP, TAU91; beta p 100.0 4.6E-31 1.6E-35 281.9 29.8 219 97-366 205-428 (524)
15 3frx_A Guanine nucleotide-bind 100.0 2.3E-30 7.8E-35 259.9 32.9 237 94-396 12-255 (319)
16 4ery_A WD repeat-containing pr 100.0 1.2E-29 4.1E-34 253.3 36.1 213 92-373 16-230 (312)
17 1nr0_A Actin interacting prote 100.0 6.6E-30 2.2E-34 279.8 35.6 271 93-390 53-379 (611)
18 4g56_B MGC81050 protein; prote 100.0 2.5E-30 8.4E-35 264.0 29.0 263 96-402 39-336 (357)
19 2hes_X YDR267CP; beta-propelle 100.0 9.9E-30 3.4E-34 256.6 32.9 278 92-402 7-321 (330)
20 2pbi_B Guanine nucleotide-bind 100.0 6.6E-30 2.3E-34 260.5 31.6 205 92-363 147-354 (354)
21 2xzm_R RACK1; ribosome, transl 100.0 2.2E-29 7.4E-34 255.4 34.5 211 92-366 14-244 (343)
22 3bg1_A Protein SEC13 homolog; 100.0 7E-31 2.4E-35 263.3 22.7 252 95-405 9-289 (316)
23 1erj_A Transcriptional repress 100.0 2.1E-29 7.2E-34 260.5 33.6 276 93-402 58-382 (393)
24 3frx_A Guanine nucleotide-bind 100.0 3.9E-29 1.3E-33 250.9 34.6 246 92-403 58-311 (319)
25 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-29 4.4E-34 257.4 30.5 243 95-368 57-337 (345)
26 4g56_B MGC81050 protein; prote 100.0 1.1E-29 3.6E-34 259.3 28.9 205 95-366 135-343 (357)
27 3iz6_a 40S ribosomal protein R 100.0 5.1E-30 1.8E-34 263.9 25.8 236 91-367 100-376 (380)
28 4gga_A P55CDC, cell division c 100.0 8.2E-29 2.8E-33 258.4 33.1 237 92-367 140-396 (420)
29 4aow_A Guanine nucleotide-bind 100.0 6.2E-29 2.1E-33 250.3 30.7 241 94-368 33-339 (340)
30 3jrp_A Fusion protein of prote 100.0 1.1E-28 3.7E-33 252.1 32.1 251 94-404 6-282 (379)
31 1nr0_A Actin interacting prote 100.0 1.2E-28 4.1E-33 269.8 34.6 273 95-402 143-560 (611)
32 2hes_X YDR267CP; beta-propelle 100.0 5.4E-29 1.9E-33 251.1 28.0 232 98-366 57-328 (330)
33 1erj_A Transcriptional repress 100.0 1.1E-28 3.8E-33 255.1 30.7 222 102-365 125-388 (393)
34 2xzm_R RACK1; ribosome, transl 100.0 3.2E-28 1.1E-32 246.8 33.0 238 93-367 70-341 (343)
35 2pm7_B Protein transport prote 100.0 1.6E-28 5.4E-33 243.8 29.9 219 92-365 46-284 (297)
36 3f3f_A Nucleoporin SEH1; struc 100.0 2.4E-28 8.2E-33 245.6 30.8 234 95-368 7-339 (351)
37 2ynn_A Coatomer subunit beta'; 100.0 2.5E-28 8.7E-33 243.2 30.3 233 92-365 48-301 (304)
38 4e54_B DNA damage-binding prot 100.0 6.8E-29 2.3E-33 260.3 26.5 213 95-370 115-331 (435)
39 2ymu_A WD-40 repeat protein; u 100.0 3.9E-28 1.3E-32 263.3 32.1 226 91-363 336-577 (577)
40 1gxr_A ESG1, transducin-like e 100.0 2E-27 7E-32 238.5 35.0 266 89-402 41-330 (337)
41 3dwl_C Actin-related protein 2 100.0 1.6E-29 5.4E-34 259.1 19.7 250 98-398 10-271 (377)
42 2ymu_A WD-40 repeat protein; u 100.0 8.5E-28 2.9E-32 260.6 34.3 261 92-401 296-572 (577)
43 4ery_A WD repeat-containing pr 100.0 1.2E-27 3.9E-32 238.9 31.6 236 92-397 58-298 (312)
44 3zwl_B Eukaryotic translation 100.0 2.9E-27 9.9E-32 240.3 34.6 241 88-398 21-279 (369)
45 3dm0_A Maltose-binding peripla 100.0 1E-27 3.4E-32 266.5 33.6 237 94-395 377-619 (694)
46 3bg1_A Protein SEC13 homolog; 100.0 1.5E-28 5.3E-33 246.2 23.9 221 92-365 50-292 (316)
47 4ggc_A P55CDC, cell division c 100.0 3.3E-27 1.1E-31 235.3 33.1 267 54-366 29-315 (318)
48 4aez_A CDC20, WD repeat-contai 100.0 1.3E-27 4.4E-32 247.7 31.2 234 97-371 132-385 (401)
49 2pm9_A Protein WEB1, protein t 100.0 1E-27 3.5E-32 248.6 26.8 235 95-370 63-341 (416)
50 3dw8_B Serine/threonine-protei 100.0 1.4E-27 4.8E-32 250.2 28.1 232 97-370 26-377 (447)
51 3vl1_A 26S proteasome regulato 100.0 1.2E-28 4.2E-33 256.2 19.6 223 105-368 61-324 (420)
52 4h5i_A Guanine nucleotide-exch 100.0 8.8E-28 3E-32 245.9 24.8 198 102-366 135-343 (365)
53 1k8k_C P40, ARP2/3 complex 41 100.0 4.1E-27 1.4E-31 240.1 29.5 250 96-396 5-262 (372)
54 3ei3_B DNA damage-binding prot 100.0 6.9E-27 2.3E-31 240.2 31.2 213 92-369 66-285 (383)
55 3v7d_B Cell division control p 100.0 1.7E-26 6E-31 243.5 34.2 265 90-396 112-409 (464)
56 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-26 4.4E-31 230.3 30.9 233 91-371 10-301 (313)
57 1r5m_A SIR4-interacting protei 100.0 1.6E-26 5.3E-31 239.6 32.8 274 91-402 37-418 (425)
58 2xyi_A Probable histone-bindin 100.0 9.2E-27 3.1E-31 243.7 30.4 216 92-366 121-353 (430)
59 3vl1_A 26S proteasome regulato 100.0 5.1E-27 1.7E-31 244.0 27.7 204 96-367 136-366 (420)
60 4a11_B DNA excision repair pro 100.0 2.7E-26 9.2E-31 236.7 33.0 255 93-370 37-369 (408)
61 4h5i_A Guanine nucleotide-exch 100.0 1E-26 3.4E-31 238.0 29.0 265 102-404 16-338 (365)
62 3mkq_A Coatomer beta'-subunit; 100.0 2.6E-26 9E-31 259.3 34.8 258 92-392 6-284 (814)
63 3dm0_A Maltose-binding peripla 100.0 1.4E-26 4.8E-31 257.3 31.8 241 93-402 424-686 (694)
64 2aq5_A Coronin-1A; WD40 repeat 100.0 8.6E-27 2.9E-31 241.4 28.0 213 95-368 77-301 (402)
65 3jro_A Fusion protein of prote 100.0 8.1E-27 2.8E-31 261.3 29.1 251 94-404 4-280 (753)
66 3k26_A Polycomb protein EED; W 100.0 3.3E-27 1.1E-31 239.8 23.3 252 98-402 68-359 (366)
67 3mmy_A MRNA export factor; mRN 100.0 5.9E-26 2E-30 230.5 31.2 242 91-399 31-336 (368)
68 3zwl_B Eukaryotic translation 100.0 1.1E-25 3.7E-30 228.7 32.5 235 91-368 66-348 (369)
69 1r5m_A SIR4-interacting protei 100.0 5.9E-26 2E-30 235.3 30.9 246 92-365 142-424 (425)
70 3i2n_A WD repeat-containing pr 100.0 2.8E-26 9.6E-31 232.3 27.3 249 93-367 59-354 (357)
71 3jrp_A Fusion protein of prote 100.0 3.6E-26 1.2E-30 233.3 28.3 214 92-366 48-287 (379)
72 2j04_B YDR362CP, TAU91; beta p 100.0 6E-27 2E-31 250.1 23.2 262 95-404 129-423 (524)
73 2pm9_A Protein WEB1, protein t 99.9 4.5E-27 1.6E-31 243.7 21.6 266 102-402 14-330 (416)
74 1gxr_A ESG1, transducin-like e 99.9 3E-25 1E-29 222.6 34.3 223 96-364 94-335 (337)
75 1yfq_A Cell cycle arrest prote 99.9 6.1E-26 2.1E-30 228.7 29.1 262 96-400 8-314 (342)
76 3v7d_B Cell division control p 99.9 1.9E-25 6.4E-30 235.6 33.6 232 91-372 154-427 (464)
77 3k26_A Polycomb protein EED; W 99.9 1.4E-26 4.7E-31 235.3 23.4 217 92-365 108-365 (366)
78 3lrv_A PRE-mRNA-splicing facto 99.9 3.5E-26 1.2E-30 231.7 26.0 218 123-367 49-293 (343)
79 1k8k_C P40, ARP2/3 complex 41 99.9 2.3E-25 7.9E-30 227.1 32.1 212 91-366 44-274 (372)
80 3ei3_B DNA damage-binding prot 99.9 1E-25 3.5E-30 231.5 28.9 232 96-397 115-371 (383)
81 1sq9_A Antiviral protein SKI8; 99.9 6.6E-26 2.3E-30 233.6 27.5 214 92-367 109-396 (397)
82 1sq9_A Antiviral protein SKI8; 99.9 4E-26 1.4E-30 235.2 25.7 242 94-402 11-315 (397)
83 3dwl_C Actin-related protein 2 99.9 9.6E-27 3.3E-31 238.4 20.8 209 94-365 50-280 (377)
84 3i2n_A WD repeat-containing pr 99.9 5.9E-26 2E-30 229.9 26.3 237 95-398 14-280 (357)
85 2xyi_A Probable histone-bindin 99.9 2E-25 6.7E-30 233.6 29.7 239 91-370 173-414 (430)
86 4e54_B DNA damage-binding prot 99.9 3.5E-26 1.2E-30 239.6 24.0 239 90-369 155-433 (435)
87 3sfz_A APAF-1, apoptotic pepti 99.9 3.8E-25 1.3E-29 261.5 35.0 260 92-403 608-907 (1249)
88 2w18_A PALB2, fancn, partner a 99.9 3.2E-25 1.1E-29 218.5 26.8 213 102-364 113-355 (356)
89 3gre_A Serine/threonine-protei 99.9 6.4E-26 2.2E-30 237.3 22.8 214 92-372 55-298 (437)
90 2ovr_B FBW7, F-BOX/WD repeat p 99.9 1.1E-24 3.8E-29 228.7 32.3 228 93-372 112-354 (445)
91 2aq5_A Coronin-1A; WD40 repeat 99.9 2.2E-25 7.5E-30 230.8 26.5 242 105-402 39-292 (402)
92 2oaj_A Protein SNI1; WD40 repe 99.9 2.8E-25 9.5E-30 252.8 28.5 208 90-370 8-246 (902)
93 1p22_A F-BOX/WD-repeat protein 99.9 5.3E-25 1.8E-29 230.5 27.7 234 91-368 165-416 (435)
94 2ovr_B FBW7, F-BOX/WD repeat p 99.9 3E-24 1E-28 225.4 33.5 257 91-400 151-429 (445)
95 4aez_A CDC20, WD repeat-contai 99.9 1.4E-24 4.8E-29 224.8 29.5 232 92-395 84-320 (401)
96 2j04_A TAU60, YPL007P, hypothe 99.9 2.5E-25 8.6E-30 232.9 23.8 244 102-397 17-286 (588)
97 1p22_A F-BOX/WD-repeat protein 99.9 1.5E-24 5.3E-29 227.0 29.8 223 96-368 130-367 (435)
98 4gga_A P55CDC, cell division c 99.9 5.4E-24 1.9E-28 221.8 33.4 227 103-396 108-338 (420)
99 3gre_A Serine/threonine-protei 99.9 2.2E-25 7.4E-30 233.2 22.9 228 96-371 108-364 (437)
100 2vdu_B TRNA (guanine-N(7)-)-me 99.9 1.6E-24 5.4E-29 228.0 28.6 205 96-364 99-337 (450)
101 3sfz_A APAF-1, apoptotic pepti 99.9 4.4E-24 1.5E-28 252.4 34.5 290 91-402 649-1027(1249)
102 4gq1_A NUP37; propeller, trans 99.9 2.6E-25 8.8E-30 229.9 20.8 242 123-399 102-380 (393)
103 4ggc_A P55CDC, cell division c 99.9 1E-23 3.5E-28 209.9 31.7 246 104-403 29-309 (318)
104 1pgu_A Actin interacting prote 99.9 2E-24 6.9E-29 235.4 28.8 236 97-399 16-273 (615)
105 3vu4_A KMHSV2; beta-propeller 99.9 3.8E-24 1.3E-28 217.9 28.1 209 94-368 14-273 (355)
106 3jro_A Fusion protein of prote 99.9 8.6E-25 3E-29 244.9 25.2 214 92-366 46-285 (753)
107 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.3E-24 1.8E-28 224.0 27.5 226 103-371 7-276 (450)
108 1pgu_A Actin interacting prote 99.9 7.1E-24 2.4E-28 231.1 29.5 212 91-372 55-289 (615)
109 3mkq_A Coatomer beta'-subunit; 99.9 2E-23 6.9E-28 235.7 31.6 233 91-366 47-302 (814)
110 2j04_A TAU60, YPL007P, hypothe 99.9 1.1E-23 3.7E-28 220.6 26.6 241 96-408 82-360 (588)
111 3mmy_A MRNA export factor; mRN 99.9 4.7E-24 1.6E-28 216.4 23.4 209 93-364 80-344 (368)
112 4gq1_A NUP37; propeller, trans 99.9 6.9E-24 2.4E-28 219.1 21.7 206 95-364 132-387 (393)
113 1yfq_A Cell cycle arrest prote 99.9 1.3E-22 4.5E-27 204.2 28.9 226 92-363 49-321 (342)
114 3dw8_B Serine/threonine-protei 99.9 2.2E-23 7.5E-28 218.2 22.8 218 95-364 173-444 (447)
115 3f3f_A Nucleoporin SEH1; struc 99.9 1.1E-22 3.8E-27 204.1 26.8 183 174-367 7-250 (351)
116 3lrv_A PRE-mRNA-splicing facto 99.9 1.8E-22 6.2E-27 204.3 25.9 198 96-365 122-332 (343)
117 2oaj_A Protein SNI1; WD40 repe 99.9 1.3E-22 4.3E-27 231.0 26.1 251 97-370 340-668 (902)
118 4a11_B DNA excision repair pro 99.9 4.6E-22 1.6E-26 204.9 25.5 226 97-365 97-404 (408)
119 4aow_A Guanine nucleotide-bind 99.9 2.2E-21 7.6E-26 194.9 27.4 188 154-372 55-252 (340)
120 3vu4_A KMHSV2; beta-propeller 99.9 2.5E-21 8.5E-26 197.1 26.1 238 104-366 62-336 (355)
121 2w18_A PALB2, fancn, partner a 99.9 6.1E-21 2.1E-25 188.1 27.7 240 124-403 56-351 (356)
122 1l0q_A Surface layer protein; 99.9 8.8E-20 3E-24 187.4 32.7 224 96-395 29-260 (391)
123 3bws_A Protein LP49; two-domai 99.9 1.5E-20 5E-25 196.0 26.7 228 102-397 125-363 (433)
124 3bws_A Protein LP49; two-domai 99.9 8.9E-20 3E-24 190.1 29.5 227 97-397 167-419 (433)
125 3odt_A Protein DOA1; ubiquitin 99.9 1.5E-19 5.1E-24 179.1 26.5 205 155-397 34-243 (313)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 6E-19 2E-23 183.4 31.7 249 103-398 65-373 (415)
127 1l0q_A Surface layer protein; 99.8 4.5E-19 1.5E-23 182.1 29.9 205 95-372 69-281 (391)
128 2ojh_A Uncharacterized protein 99.8 8E-19 2.7E-23 171.8 26.2 239 92-398 34-291 (297)
129 2oit_A Nucleoporin 214KDA; NH2 99.8 9.8E-20 3.3E-24 190.3 20.0 216 104-367 40-279 (434)
130 2hqs_A Protein TOLB; TOLB, PAL 99.8 1.3E-18 4.5E-23 180.8 27.5 204 93-370 172-391 (415)
131 2ecf_A Dipeptidyl peptidase IV 99.8 3.2E-17 1.1E-21 183.2 23.8 251 102-396 38-354 (741)
132 1xfd_A DIP, dipeptidyl aminope 99.8 5.7E-18 1.9E-22 188.6 16.5 227 103-396 19-323 (723)
133 2oit_A Nucleoporin 214KDA; NH2 99.8 2E-17 6.8E-22 172.8 19.5 163 96-309 89-279 (434)
134 1ri6_A Putative isomerase YBHE 99.8 7.3E-16 2.5E-20 154.5 30.2 239 94-397 32-295 (343)
135 3vgz_A Uncharacterized protein 99.7 1.3E-15 4.3E-20 153.7 30.8 233 103-397 91-332 (353)
136 2ojh_A Uncharacterized protein 99.7 1.4E-16 4.9E-21 155.6 22.6 210 127-398 17-236 (297)
137 1nir_A Nitrite reductase; hemo 99.7 7.9E-16 2.7E-20 165.2 29.3 228 103-400 181-442 (543)
138 3vgz_A Uncharacterized protein 99.7 1.9E-15 6.5E-20 152.3 28.3 222 103-396 43-289 (353)
139 1nir_A Nitrite reductase; hemo 99.7 7.2E-16 2.5E-20 165.5 25.7 199 107-374 144-363 (543)
140 3hfq_A Uncharacterized protein 99.7 7E-15 2.4E-19 148.3 30.0 239 96-398 36-305 (347)
141 3hfq_A Uncharacterized protein 99.7 3.9E-15 1.3E-19 150.2 28.1 225 96-371 82-324 (347)
142 3u4y_A Uncharacterized protein 99.7 9.6E-15 3.3E-19 146.0 29.9 230 102-397 42-291 (331)
143 1pby_B Quinohemoprotein amine 99.7 4E-15 1.4E-19 148.7 26.9 202 103-372 36-316 (337)
144 3u4y_A Uncharacterized protein 99.7 3.9E-15 1.3E-19 148.9 26.4 216 123-396 11-238 (331)
145 1ri6_A Putative isomerase YBHE 99.7 5.1E-15 1.8E-19 148.2 26.5 205 102-369 85-313 (343)
146 3scy_A Hypothetical bacterial 99.7 4.9E-14 1.7E-18 143.0 32.5 255 98-385 48-358 (361)
147 3o4h_A Acylamino-acid-releasin 99.7 1E-15 3.6E-20 166.0 20.9 196 102-370 23-231 (582)
148 2z3z_A Dipeptidyl aminopeptida 99.7 2.2E-15 7.5E-20 167.3 21.8 225 103-397 84-374 (706)
149 1z68_A Fibroblast activation p 99.7 7E-16 2.4E-20 171.7 17.6 228 105-395 20-328 (719)
150 1xfd_A DIP, dipeptidyl aminope 99.7 3.5E-15 1.2E-19 166.0 22.7 227 103-397 63-378 (723)
151 1jmx_B Amine dehydrogenase; ox 99.7 1.2E-14 3.9E-19 146.2 24.2 222 105-371 4-330 (349)
152 2ecf_A Dipeptidyl peptidase IV 99.7 3.1E-15 1.1E-19 167.0 21.9 245 95-396 147-442 (741)
153 2z3z_A Dipeptidyl aminopeptida 99.7 7.3E-15 2.5E-19 163.1 23.8 247 93-396 114-418 (706)
154 1pby_B Quinohemoprotein amine 99.6 1.9E-14 6.7E-19 143.6 24.0 227 123-397 2-298 (337)
155 1k32_A Tricorn protease; prote 99.6 1.7E-14 6E-19 167.2 25.3 235 104-402 248-495 (1045)
156 4a5s_A Dipeptidyl peptidase 4 99.6 1.9E-14 6.4E-19 160.8 23.3 210 104-368 20-296 (740)
157 1k32_A Tricorn protease; prote 99.6 1.2E-14 4.2E-19 168.5 20.8 192 102-366 297-502 (1045)
158 3o4h_A Acylamino-acid-releasin 99.6 5E-14 1.7E-18 152.7 21.7 220 95-395 59-298 (582)
159 1jof_A Carboxy-CIS,CIS-muconat 99.6 3.3E-13 1.1E-17 137.3 25.8 210 103-370 42-296 (365)
160 3pe7_A Oligogalacturonate lyas 99.5 4.2E-13 1.4E-17 137.2 22.2 195 106-370 41-277 (388)
161 1z68_A Fibroblast activation p 99.5 5.3E-14 1.8E-18 156.5 15.2 199 103-368 62-348 (719)
162 1jof_A Carboxy-CIS,CIS-muconat 99.5 7.4E-13 2.5E-17 134.7 22.1 206 104-367 86-342 (365)
163 1q7f_A NHL, brain tumor CG1071 99.5 2.2E-11 7.6E-16 118.9 27.7 200 103-367 32-239 (286)
164 1q7f_A NHL, brain tumor CG1071 99.5 2.1E-11 7.3E-16 119.1 27.1 191 103-365 79-279 (286)
165 3pe7_A Oligogalacturonate lyas 99.5 3.2E-12 1.1E-16 130.6 21.9 232 102-399 82-371 (388)
166 3fvz_A Peptidyl-glycine alpha- 99.5 1.2E-11 4.1E-16 123.9 25.7 222 102-391 25-304 (329)
167 3azo_A Aminopeptidase; POP fam 99.5 4.5E-12 1.5E-16 139.5 23.9 215 95-371 19-279 (662)
168 2xdw_A Prolyl endopeptidase; a 99.5 1.7E-11 5.9E-16 136.1 28.7 228 102-395 126-396 (710)
169 2dg1_A DRP35, lactonase; beta 99.4 1.4E-10 4.6E-15 115.9 29.6 240 96-398 41-299 (333)
170 3scy_A Hypothetical bacterial 99.4 8.4E-11 2.9E-15 119.0 28.0 194 183-396 53-276 (361)
171 4a5s_A Dipeptidyl peptidase 4 99.4 4.9E-12 1.7E-16 141.2 18.2 200 105-371 66-358 (740)
172 3e5z_A Putative gluconolactona 99.4 1.1E-10 3.8E-15 114.7 25.9 224 102-398 29-276 (296)
173 2oiz_A Aromatic amine dehydrog 99.4 6.2E-11 2.1E-15 120.3 24.7 220 105-391 54-360 (361)
174 3c5m_A Oligogalacturonate lyas 99.4 4.5E-12 1.5E-16 129.6 14.2 219 103-395 38-299 (396)
175 3fvz_A Peptidyl-glycine alpha- 99.4 8.5E-11 2.9E-15 117.6 23.1 204 102-366 92-322 (329)
176 3c5m_A Oligogalacturonate lyas 99.3 1.8E-11 6.2E-16 125.0 17.9 211 102-369 82-332 (396)
177 3azo_A Aminopeptidase; POP fam 99.3 5E-11 1.7E-15 131.0 22.4 206 98-370 128-373 (662)
178 3no2_A Uncharacterized protein 99.3 2.2E-10 7.6E-15 111.5 21.5 186 123-372 6-201 (276)
179 3e5z_A Putative gluconolactona 99.3 6.6E-10 2.3E-14 109.1 25.1 204 97-371 66-291 (296)
180 1jmx_B Amine dehydrogenase; ox 99.3 3.9E-11 1.3E-15 120.2 16.3 157 183-371 3-180 (349)
181 2bkl_A Prolyl endopeptidase; m 99.3 6.3E-10 2.2E-14 123.1 25.6 231 97-395 118-379 (695)
182 1rwi_B Serine/threonine-protei 99.3 5.7E-10 2E-14 107.6 21.9 195 103-367 69-265 (270)
183 1rwi_B Serine/threonine-protei 99.3 1.2E-09 4E-14 105.4 24.0 196 104-369 27-225 (270)
184 2dg1_A DRP35, lactonase; beta 99.3 1.3E-10 4.5E-15 116.0 17.7 192 103-366 8-213 (333)
185 2gop_A Trilobed protease; beta 99.2 2.6E-10 8.9E-15 114.5 19.0 182 103-368 61-293 (347)
186 1xip_A Nucleoporin NUP159; bet 99.2 1.7E-10 5.9E-15 116.9 17.5 183 103-354 40-232 (388)
187 1yr2_A Prolyl oligopeptidase; 99.2 2.3E-09 7.7E-14 119.6 26.1 227 102-395 164-423 (741)
188 2gop_A Trilobed protease; beta 99.2 3E-09 1E-13 106.6 23.8 180 103-365 106-330 (347)
189 2z2n_A Virginiamycin B lyase; 99.2 4E-08 1.4E-12 95.7 29.4 199 102-369 16-215 (299)
190 3g4e_A Regucalcin; six bladed 99.1 3.6E-08 1.2E-12 96.8 28.8 238 102-402 14-265 (297)
191 3dsm_A Uncharacterized protein 99.1 1.2E-08 4.1E-13 101.9 25.0 205 102-372 85-307 (328)
192 2xdw_A Prolyl endopeptidase; a 99.1 9E-09 3.1E-13 114.1 26.1 202 104-368 174-416 (710)
193 2z2n_A Virginiamycin B lyase; 99.1 9.2E-08 3.1E-12 93.2 29.8 196 102-365 58-254 (299)
194 3dsm_A Uncharacterized protein 99.1 1.7E-08 5.9E-13 100.7 24.8 209 123-396 55-284 (328)
195 1qks_A Cytochrome CD1 nitrite 99.1 3.4E-08 1.2E-12 105.8 28.5 192 123-373 168-380 (567)
196 1qks_A Cytochrome CD1 nitrite 99.1 1E-07 3.6E-12 102.0 31.6 198 102-366 198-421 (567)
197 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 3.5E-08 1.2E-12 97.1 26.2 231 104-397 21-286 (314)
198 1xip_A Nucleoporin NUP159; bet 99.0 3E-09 1E-13 107.8 15.7 150 180-369 39-194 (388)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.0 9E-08 3.1E-12 94.2 25.8 198 102-366 72-299 (314)
200 3hrp_A Uncharacterized protein 99.0 4.8E-08 1.7E-12 100.6 24.6 196 103-370 133-358 (409)
201 2oiz_A Aromatic amine dehydrog 99.0 1.4E-08 4.7E-13 102.9 20.2 205 103-348 110-360 (361)
202 2bkl_A Prolyl endopeptidase; m 99.0 5.5E-09 1.9E-13 115.6 18.6 201 104-369 171-400 (695)
203 3no2_A Uncharacterized protein 99.0 9.8E-09 3.4E-13 99.8 18.1 170 192-396 4-182 (276)
204 3iuj_A Prolyl endopeptidase; h 99.0 3.7E-08 1.3E-12 108.8 24.3 230 97-396 126-388 (693)
205 2qc5_A Streptogramin B lactona 99.0 4.4E-07 1.5E-11 88.3 29.2 195 102-364 21-216 (300)
206 2qc5_A Streptogramin B lactona 99.0 4.3E-07 1.5E-11 88.3 28.4 195 102-365 63-259 (300)
207 2ghs_A AGR_C_1268P; regucalcin 98.9 8.4E-07 2.9E-11 88.3 29.2 230 103-401 51-294 (326)
208 2qe8_A Uncharacterized protein 98.9 1.1E-07 3.9E-12 95.3 22.8 218 102-370 18-282 (343)
209 2mad_H Methylamine dehydrogena 98.9 8.3E-07 2.8E-11 90.1 28.0 213 105-382 70-367 (373)
210 3g4e_A Regucalcin; six bladed 98.8 7.1E-07 2.4E-11 87.5 24.4 189 102-355 55-261 (297)
211 3dr2_A Exported gluconolactona 98.8 6.8E-07 2.3E-11 87.9 23.5 223 102-397 46-295 (305)
212 3hrp_A Uncharacterized protein 98.8 9.3E-07 3.2E-11 90.9 25.3 194 106-364 176-408 (409)
213 2hz6_A Endoplasmic reticulum t 98.8 1E-09 3.5E-14 111.6 2.7 181 123-370 10-196 (369)
214 1yr2_A Prolyl oligopeptidase; 98.8 3.4E-07 1.2E-11 101.9 22.6 162 179-370 268-445 (741)
215 2ghs_A AGR_C_1268P; regucalcin 98.8 3.6E-06 1.2E-10 83.7 26.4 187 102-356 91-292 (326)
216 3dr2_A Exported gluconolactona 98.6 3.7E-06 1.3E-10 82.6 20.6 188 102-360 87-301 (305)
217 3iuj_A Prolyl endopeptidase; h 98.5 5.5E-06 1.9E-10 91.4 22.4 200 104-370 178-409 (693)
218 2ece_A 462AA long hypothetical 98.5 1.1E-05 3.6E-10 82.2 22.2 193 123-365 97-351 (462)
219 2ece_A 462AA long hypothetical 98.5 2.1E-05 7E-10 80.1 24.3 207 86-354 116-399 (462)
220 3c75_H MADH, methylamine dehyd 98.5 1.1E-05 3.6E-10 82.8 22.4 223 105-382 122-419 (426)
221 1npe_A Nidogen, entactin; glyc 98.5 0.0002 6.8E-09 68.5 30.1 202 103-372 38-244 (267)
222 2iwa_A Glutamine cyclotransfer 98.5 4.5E-05 1.5E-09 72.7 24.1 205 91-366 10-237 (266)
223 1mda_H Methylamine dehydrogena 98.4 6.4E-06 2.2E-10 83.0 17.7 83 283-382 269-362 (368)
224 3sjl_D Methylamine dehydrogena 98.4 2.6E-05 8.9E-10 78.6 22.1 199 104-374 140-371 (386)
225 2mad_H Methylamine dehydrogena 98.4 0.00026 8.8E-09 71.6 29.6 125 133-306 48-194 (373)
226 2qe8_A Uncharacterized protein 98.4 2E-05 6.8E-10 78.8 20.6 199 102-362 68-317 (343)
227 3sjl_D Methylamine dehydrogena 98.4 2.8E-05 9.5E-10 78.4 20.9 230 105-395 82-348 (386)
228 2hz6_A Endoplasmic reticulum t 98.3 9.2E-08 3.1E-12 97.1 0.3 142 192-369 8-152 (369)
229 1fwx_A Nitrous oxide reductase 98.3 8.2E-05 2.8E-09 78.4 22.3 231 123-399 102-408 (595)
230 3c75_H MADH, methylamine dehyd 98.2 7.6E-05 2.6E-09 76.4 19.8 98 132-273 99-216 (426)
231 1yiq_A Quinohemoprotein alcoho 98.2 0.00023 7.9E-09 78.1 24.7 159 184-371 239-510 (689)
232 3nol_A Glutamine cyclotransfer 98.2 0.00039 1.3E-08 65.6 22.4 193 91-355 32-244 (262)
233 2p4o_A Hypothetical protein; p 98.2 0.0023 7.8E-08 62.5 28.7 228 102-398 33-277 (306)
234 3hxj_A Pyrrolo-quinoline quino 98.1 0.00015 5.1E-09 71.3 19.6 176 123-365 108-283 (330)
235 1kb0_A Quinohemoprotein alcoho 98.1 0.00019 6.6E-09 78.5 20.6 218 123-372 175-513 (677)
236 3mbr_X Glutamine cyclotransfer 98.1 0.003 1E-07 58.9 25.6 192 91-354 10-222 (243)
237 3hxj_A Pyrrolo-quinoline quino 98.0 0.00019 6.4E-09 70.6 18.3 175 124-365 149-323 (330)
238 2fp8_A Strictosidine synthase; 98.0 0.0014 4.7E-08 64.5 23.4 209 105-365 23-268 (322)
239 1kb0_A Quinohemoprotein alcoho 97.9 0.00028 9.5E-09 77.3 19.0 78 257-352 457-537 (677)
240 1npe_A Nidogen, entactin; glyc 97.9 0.0073 2.5E-07 57.4 27.0 155 183-368 39-200 (267)
241 3nok_A Glutaminyl cyclase; bet 97.9 0.0015 5.2E-08 61.6 21.0 189 91-354 44-253 (268)
242 3q7m_A Lipoprotein YFGL, BAMB; 97.9 0.0012 3.9E-08 66.5 20.6 142 193-371 188-342 (376)
243 3q7m_A Lipoprotein YFGL, BAMB; 97.8 0.0022 7.6E-08 64.4 22.5 182 123-370 104-300 (376)
244 2xe4_A Oligopeptidase B; hydro 97.8 0.0032 1.1E-07 69.8 25.0 154 102-306 175-352 (751)
245 1mda_H Methylamine dehydrogena 97.8 0.001 3.4E-08 66.9 18.8 90 133-265 47-158 (368)
246 1yiq_A Quinohemoprotein alcoho 97.8 0.00058 2E-08 74.9 18.6 198 123-370 71-342 (689)
247 3qqz_A Putative uncharacterize 97.8 0.012 4.1E-07 55.5 25.0 200 102-364 28-251 (255)
248 1fwx_A Nitrous oxide reductase 97.7 0.0011 3.8E-08 69.8 18.0 147 204-369 255-434 (595)
249 3v65_B Low-density lipoprotein 97.7 0.033 1.1E-06 56.2 28.7 198 104-367 119-319 (386)
250 3v64_C Agrin; beta propeller, 97.7 0.049 1.7E-06 54.1 30.1 197 104-367 76-276 (349)
251 4a2l_A BT_4663, two-component 97.7 0.025 8.4E-07 63.1 29.6 201 102-371 358-576 (795)
252 2iwa_A Glutamine cyclotransfer 97.7 0.0032 1.1E-07 59.9 18.7 155 183-372 24-187 (266)
253 1ijq_A LDL receptor, low-densi 97.6 0.058 2E-06 52.7 29.9 201 104-368 33-240 (316)
254 2fp8_A Strictosidine synthase; 97.6 0.011 3.8E-07 57.9 22.0 149 183-365 129-312 (322)
255 1k3i_A Galactose oxidase precu 97.5 0.0046 1.6E-07 67.4 20.1 71 183-266 246-324 (656)
256 1kv9_A Type II quinohemoprotei 97.5 0.015 5.2E-07 63.3 23.4 159 184-371 234-493 (668)
257 3nol_A Glutamine cyclotransfer 97.5 0.0093 3.2E-07 56.2 18.5 154 183-372 46-207 (262)
258 3nok_A Glutaminyl cyclase; bet 97.4 0.0036 1.2E-07 59.0 15.6 151 183-372 58-216 (268)
259 1ijq_A LDL receptor, low-densi 97.4 0.1 3.6E-06 50.8 27.2 157 183-366 33-195 (316)
260 3tc9_A Hypothetical hydrolase; 97.4 0.025 8.7E-07 58.0 23.1 150 105-307 141-300 (430)
261 3sov_A LRP-6, low-density lipo 97.4 0.11 3.8E-06 50.8 26.7 201 102-369 37-241 (318)
262 4a2l_A BT_4663, two-component 97.4 0.074 2.5E-06 59.1 28.6 203 102-371 264-485 (795)
263 3p5b_L Low density lipoprotein 97.3 0.16 5.6E-06 51.3 31.4 150 192-368 170-322 (400)
264 4hw6_A Hypothetical protein, I 97.3 0.039 1.3E-06 56.6 23.4 150 105-307 143-303 (433)
265 3v65_B Low-density lipoprotein 97.3 0.074 2.5E-06 53.6 25.1 154 183-366 119-277 (386)
266 3v9f_A Two-component system se 97.3 0.044 1.5E-06 60.9 25.2 155 179-371 407-573 (781)
267 3mbr_X Glutamine cyclotransfer 97.3 0.058 2E-06 50.2 21.7 153 183-372 24-185 (243)
268 3v64_C Agrin; beta propeller, 97.2 0.17 5.8E-06 50.1 26.0 153 183-366 76-234 (349)
269 3p5b_L Low density lipoprotein 97.2 0.22 7.5E-06 50.4 27.2 158 183-367 115-278 (400)
270 2ad6_A Methanol dehydrogenase 97.2 0.095 3.2E-06 55.8 25.5 29 344-372 472-500 (571)
271 1kv9_A Type II quinohemoprotei 97.2 0.0083 2.8E-07 65.4 17.6 197 123-370 67-337 (668)
272 2p9w_A MAL S 1 allergenic prot 97.2 0.023 7.7E-07 55.4 18.4 153 182-365 15-214 (334)
273 3qqz_A Putative uncharacterize 97.1 0.15 5E-06 48.0 23.1 164 175-367 23-205 (255)
274 3m0c_C LDL receptor, low-densi 97.1 0.36 1.2E-05 53.3 29.7 153 183-367 476-633 (791)
275 2p4o_A Hypothetical protein; p 97.1 0.058 2E-06 52.3 20.7 140 191-357 126-279 (306)
276 2p9w_A MAL S 1 allergenic prot 97.0 0.04 1.4E-06 53.7 18.5 159 105-307 17-214 (334)
277 3tc9_A Hypothetical hydrolase; 97.0 0.024 8.3E-07 58.1 18.0 153 182-365 139-300 (430)
278 3sre_A PON1, serum paraoxonase 97.0 0.2 6.9E-06 49.6 23.4 148 183-356 115-287 (355)
279 3sov_A LRP-6, low-density lipo 97.0 0.22 7.6E-06 48.6 23.6 155 183-366 38-197 (318)
280 3v9f_A Two-component system se 96.9 0.21 7E-06 55.4 25.4 154 179-371 450-616 (781)
281 1w6s_A Methanol dehydrogenase 96.9 0.22 7.6E-06 53.2 24.4 26 346-371 483-508 (599)
282 1k3i_A Galactose oxidase precu 96.8 0.043 1.5E-06 59.7 19.1 112 184-308 190-323 (656)
283 3pbp_A Nucleoporin NUP82; beta 96.8 0.087 3E-06 52.9 19.1 153 191-362 30-208 (452)
284 3kya_A Putative phosphatase; s 96.8 0.41 1.4E-05 49.6 24.8 158 104-306 142-339 (496)
285 2ad6_A Methanol dehydrogenase 96.8 0.17 5.7E-06 53.9 22.8 26 123-148 116-141 (571)
286 2xzh_A Clathrin heavy chain 1; 96.8 0.44 1.5E-05 46.1 24.7 197 123-372 79-296 (365)
287 4a0p_A LRP6, LRP-6, low-densit 96.7 0.92 3.1E-05 48.7 27.8 198 102-368 39-239 (628)
288 1n7d_A LDL receptor, low-densi 96.7 0.016 5.6E-07 63.4 14.1 151 192-372 464-620 (699)
289 3m0c_C LDL receptor, low-densi 96.6 0.79 2.7E-05 50.6 26.8 160 183-368 427-591 (791)
290 1bpo_A Protein (clathrin); cla 96.6 0.76 2.6E-05 46.3 24.8 197 123-372 78-295 (494)
291 1w6s_A Methanol dehydrogenase 96.5 0.17 5.9E-06 54.1 20.1 200 123-371 63-347 (599)
292 2xbg_A YCF48-like protein; pho 96.4 0.38 1.3E-05 47.0 21.1 151 177-364 161-320 (327)
293 4hw6_A Hypothetical protein, I 96.3 0.12 4.1E-06 52.9 17.1 154 182-365 141-303 (433)
294 2xe4_A Oligopeptidase B; hydro 96.1 0.14 4.8E-06 56.5 17.8 152 105-305 225-395 (751)
295 1flg_A Protein (quinoprotein e 96.1 0.54 1.9E-05 50.0 21.7 26 346-371 496-521 (582)
296 3amr_A 3-phytase; beta-propell 96.1 1.2 4.2E-05 43.6 23.8 192 123-365 41-262 (355)
297 3pbp_A Nucleoporin NUP82; beta 95.8 1.8 6.3E-05 43.4 23.1 115 183-304 69-208 (452)
298 3s94_A LRP-6, low-density lipo 95.7 1 3.6E-05 48.2 21.9 201 102-369 42-246 (619)
299 3sre_A PON1, serum paraoxonase 95.7 0.52 1.8E-05 46.6 18.0 139 201-365 81-251 (355)
300 2ism_A Putative oxidoreductase 95.7 1.8 6.1E-05 42.7 22.8 217 103-366 33-297 (352)
301 1flg_A Protein (quinoprotein e 95.7 1.2 4.2E-05 47.3 22.0 200 123-371 69-360 (582)
302 3amr_A 3-phytase; beta-propell 95.6 0.96 3.3E-05 44.3 19.1 154 193-365 40-209 (355)
303 2xbg_A YCF48-like protein; pho 95.5 2 7E-05 41.7 26.6 149 180-363 81-231 (327)
304 3kya_A Putative phosphatase; s 95.3 0.72 2.5E-05 47.7 17.8 168 183-365 142-340 (496)
305 1n7d_A LDL receptor, low-densi 95.2 0.064 2.2E-06 58.7 10.1 158 183-367 409-572 (699)
306 1xi4_A Clathrin heavy chain; a 94.9 0.86 2.9E-05 52.8 18.3 197 123-372 78-295 (1630)
307 4a0p_A LRP6, LRP-6, low-densit 94.6 5.7 0.0002 42.5 28.4 155 183-367 40-198 (628)
308 2vpj_A Kelch-like protein 12; 94.5 2.6 8.9E-05 40.0 18.9 151 192-372 62-237 (301)
309 2vpj_A Kelch-like protein 12; 94.4 2.6 9E-05 40.0 18.7 151 192-372 112-284 (301)
310 2g8s_A Glucose/sorbosone dehyd 94.3 0.89 3E-05 44.9 15.2 107 182-297 20-149 (353)
311 1cru_A Protein (soluble quinop 94.2 1.6 5.4E-05 44.8 17.4 108 182-297 29-163 (454)
312 2xn4_A Kelch-like protein 2; s 94.2 3.5 0.00012 39.1 19.0 151 192-372 108-282 (302)
313 3ii7_A Kelch-like protein 7; p 93.8 3.2 0.00011 39.5 18.0 150 192-371 101-277 (306)
314 2xn4_A Kelch-like protein 2; s 93.8 2.4 8.4E-05 40.3 17.0 151 192-372 61-235 (302)
315 3das_A Putative oxidoreductase 93.8 2.2 7.6E-05 41.8 16.7 108 182-297 34-159 (347)
316 2ism_A Putative oxidoreductase 93.7 1.5 5.3E-05 43.1 15.7 101 182-296 33-153 (352)
317 3ii7_A Kelch-like protein 7; p 93.5 5.2 0.00018 38.0 18.9 151 192-372 55-231 (306)
318 3ei3_A DNA damage-binding prot 93.5 8.4 0.00029 44.4 23.3 160 178-364 885-1060(1158)
319 1zgk_A Kelch-like ECH-associat 93.5 3.2 0.00011 39.7 17.3 151 192-372 70-246 (308)
320 3s94_A LRP-6, low-density lipo 93.0 11 0.00038 40.2 26.3 109 183-306 397-508 (619)
321 3ei3_A DNA damage-binding prot 92.9 6.1 0.00021 45.6 20.8 143 193-366 844-999 (1158)
322 3a9g_A Putative uncharacterize 92.7 8.2 0.00028 37.9 24.9 218 103-366 31-296 (354)
323 1tl2_A L10, protein (tachylect 91.9 2.4 8.1E-05 38.6 12.4 108 180-302 42-157 (236)
324 1cru_A Protein (soluble quinop 91.9 7.6 0.00026 39.6 18.2 32 102-143 28-59 (454)
325 1zgk_A Kelch-like ECH-associat 91.3 5.1 0.00018 38.2 15.6 151 192-372 121-293 (308)
326 4asc_A Kelch repeat and BTB do 91.0 11 0.00038 35.8 17.8 27 346-372 196-227 (315)
327 2be1_A Serine/threonine-protei 89.1 2.4 8.1E-05 41.5 10.8 26 123-148 11-36 (339)
328 3sbq_A Nitrous-oxide reductase 88.5 4.1 0.00014 42.3 12.3 115 281-400 326-456 (638)
329 2woz_A Kelch repeat and BTB do 88.3 13 0.00045 35.4 15.8 27 346-372 206-237 (318)
330 1tl2_A L10, protein (tachylect 88.3 5.8 0.0002 36.1 11.8 145 193-360 4-157 (236)
331 3ott_A Two-component system se 88.0 34 0.0011 37.2 24.6 191 102-369 64-263 (758)
332 4asc_A Kelch repeat and BTB do 87.6 20 0.00067 34.0 19.3 103 192-308 98-221 (315)
333 2uvk_A YJHT; unknown function, 85.8 20 0.00069 34.6 15.7 27 345-371 315-347 (357)
334 3a9g_A Putative uncharacterize 85.7 28 0.00095 34.0 22.7 150 183-354 138-330 (354)
335 2uvk_A YJHT; unknown function, 83.6 13 0.00046 35.9 13.3 23 192-214 65-97 (357)
336 2zwa_A Leucine carboxyl methyl 82.4 26 0.00087 37.9 15.9 160 192-371 451-640 (695)
337 2woz_A Kelch repeat and BTB do 81.9 35 0.0012 32.2 18.7 103 192-308 109-231 (318)
338 2zwa_A Leucine carboxyl methyl 80.7 15 0.00053 39.6 13.4 152 192-368 397-579 (695)
339 1xi4_A Clathrin heavy chain; a 80.5 18 0.00062 42.2 13.9 103 191-308 75-188 (1630)
340 3das_A Putative oxidoreductase 79.1 49 0.0017 32.2 29.6 226 102-367 33-293 (347)
341 2wg3_C Hedgehog-interacting pr 78.7 16 0.00056 37.2 12.1 110 182-298 16-159 (463)
342 3s25_A Hypothetical 7-bladed b 75.3 57 0.0019 30.9 15.3 100 236-367 110-217 (302)
343 3ott_A Two-component system se 73.6 1E+02 0.0036 33.2 25.4 150 180-370 64-224 (758)
344 4gq2_M Nucleoporin NUP120; bet 72.3 46 0.0016 37.4 14.6 30 279-308 237-266 (950)
345 1bpo_A Protein (clathrin); cla 71.2 91 0.0031 31.5 25.6 152 189-366 158-331 (494)
346 3sbq_A Nitrous-oxide reductase 69.7 43 0.0015 34.9 12.1 109 231-354 324-453 (638)
347 3s25_A Hypothetical 7-bladed b 59.6 1.2E+02 0.004 28.6 19.2 139 185-366 109-255 (302)
348 4gq2_M Nucleoporin NUP120; bet 55.5 71 0.0024 35.9 11.9 35 183-225 239-273 (950)
349 2wg3_C Hedgehog-interacting pr 53.9 1.9E+02 0.0064 29.2 15.7 118 230-357 14-160 (463)
350 2g8s_A Glucose/sorbosone dehyd 52.8 1.6E+02 0.0056 28.2 27.4 41 326-367 262-309 (353)
351 2xzh_A Clathrin heavy chain 1; 50.2 1.8E+02 0.0063 28.0 27.5 151 189-365 159-331 (365)
352 3f7f_A Nucleoporin NUP120; nuc 49.3 1E+02 0.0034 33.2 11.1 28 123-150 232-259 (729)
353 2be1_A Serine/threonine-protei 39.6 25 0.00086 34.1 4.4 104 194-307 11-129 (339)
354 4fhn_B Nucleoporin NUP120; pro 38.8 67 0.0023 36.9 8.5 35 183-225 241-275 (1139)
355 1zi0_A DNA gyrase subunit A; b 37.0 2.7E+02 0.0092 26.1 16.2 158 192-366 2-176 (307)
356 4fhn_B Nucleoporin NUP120; pro 31.9 34 0.0012 39.3 4.6 35 105-149 242-276 (1139)
357 4a9v_A PHOX; hydrolase, beta-p 31.8 1.6E+02 0.0056 30.6 9.1 59 230-295 476-548 (592)
358 3q6k_A 43.2 kDa salivary prote 27.7 4.4E+02 0.015 25.7 18.6 124 230-366 152-306 (381)
359 3zwu_A Alkaline phosphatase PH 26.7 1.9E+02 0.0066 30.2 8.8 58 231-295 477-548 (592)
360 3b7f_A Glycosyl hydrolase, BNR 25.5 4.5E+02 0.015 25.2 15.9 101 194-304 23-143 (394)
361 1suu_A DNA gyrase subunit A; t 23.4 4.6E+02 0.016 24.5 17.5 160 191-366 6-181 (312)
362 3f7f_A Nucleoporin NUP120; nuc 23.0 1.4E+02 0.0046 32.2 6.8 34 336-371 222-255 (729)
363 3zwu_A Alkaline phosphatase PH 21.3 2.3E+02 0.0077 29.7 8.1 60 280-353 478-548 (592)
364 4hvt_A Ritya.17583.B, post-pro 20.9 7.8E+02 0.027 26.2 25.7 144 203-368 216-383 (711)
No 1
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=3.6e-33 Score=278.34 Aligned_cols=259 Identities=15% Similarity=0.183 Sum_probs=214.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
...+.+|.+ .|++++|+|++ .+|++|+.||+|+|||+.++..+..+..+.. +.++
T Consensus 6 ~~~~~~h~~-~V~~~~fsp~~----------~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s 74 (304)
T 2ynn_A 6 KKTFSNRSD-RVKGIDFHPTE----------PWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS 74 (304)
T ss_dssp EEEEEEECS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred EEeecCCCC-ceEEEEECCCC----------CEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC
Confidence 344678998 55599999999 7999999999999999999988888876654 5678
Q ss_pred CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.+..+++|+..+ +...+.+|...| .+++|+ |++.+|++|+.||+|++||+... ..+...+.+|...|.++
T Consensus 75 ~d~~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~sgs~D~~v~lWd~~~~-----~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYI-RSIAVH--PTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCV 146 (304)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEEGGGT-----TEEEEEECCCCSCEEEE
T ss_pred CCCEEEEEECCCCcEEEEEeCCCCcE-EEEEEc--CCCCEEEEECCCCeEEEEECCCC-----cchhhhhcccCCcEEEE
Confidence 899999999876 555678999999 999999 88999999999999999999865 24566788999999999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEccccccC
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
+|+|.+ +.+|++|+.|+ |++||++..........+|...+..++|+| ++.+|++++.|++|++||++.
T Consensus 147 ~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~---- 217 (304)
T 2ynn_A 147 AFNPKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---- 217 (304)
T ss_dssp EECTTC-----TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTT----
T ss_pred EECCCC-----CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCC----
Confidence 999953 27999999999 999999877443444456778899999987 778999999999999999953
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCC
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDES 391 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 391 (568)
+ .++..+.+|...|.+++|+|++.+|++++.||+|++||+.+++..+...... ....|.++.+++.
T Consensus 218 ----~--------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 283 (304)
T 2ynn_A 218 ----K--------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL-ERSWCIATHPTGR 283 (304)
T ss_dssp ----T--------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS-SSEEEEEECTTCG
T ss_pred ----C--------ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC-ccEEEEEECCCCC
Confidence 4 3457899999999999999999999999999999999999887766543322 2233445555553
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.7e-33 Score=293.05 Aligned_cols=267 Identities=11% Similarity=0.166 Sum_probs=230.3
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
...+.+|.+ .|++++|+|++ .+|++|+.||+|+|||+.+++....+.+|.. ++++
T Consensus 101 ~~~l~gh~~-~V~~~~~~p~~----------~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 101 KYALSGHRS-PVTRVIFHPVF----------SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169 (410)
T ss_dssp SCEEECCSS-CEEEEEECSSS----------SEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred eEeecccCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEe
Confidence 445679998 55599999999 7999999999999999999998888887765 5677
Q ss_pred CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.++.+++|+... +...+.+|...| .+++|+ |++.+|++|+.||+|++||+.++ .++..+.+|...|.++
T Consensus 170 ~D~~i~iwd~~~~~~~~~~~~h~~~V-~~v~~~--p~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIRTMHGHDHNV-SSVSIM--PNGDHIVSASRDKTIKMWEVQTG------YCVKTFTGHREWVRMV 240 (410)
T ss_dssp TTSCCCEEETTSSCEEECCCCCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEE
T ss_pred CCCeEEEEeCCCCceeEEEcCCCCCE-EEEEEe--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEeCCCccEEEE
Confidence 889999998765 666778999999 999999 88999999999999999999977 7888999999999999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC--------------------CCEEEE
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD--------------------PGCVIL 294 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~--------------------~~~l~s 294 (568)
.|+|++ .+|++|+.|+ |++||+++. .+...+.+|...|.+++|+|+ +.+|++
T Consensus 241 ~~~~~g------~~l~s~s~D~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s 313 (410)
T 1vyh_C 241 RPNQDG------TLIASCSNDQTVRVWVVATK-ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 313 (410)
T ss_dssp EECTTS------SEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred EECCCC------CEEEEEcCCCeEEEEECCCC-ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE
Confidence 999999 8999999999 999999987 777888999999999999996 678999
Q ss_pred EeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC
Q 008363 295 SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 295 ~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
|+.|++|++||++. | .++..+.+|...|++++|+|++.+|++++.||.|++||+.++.......
T Consensus 314 gs~D~~i~iwd~~~--------~--------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 314 GSRDKTIKMWDVST--------G--------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp EETTSEEEEEETTT--------T--------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred EeCCCeEEEEECCC--------C--------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 99999999999953 4 3457889999999999999999999999999999999998776554433
Q ss_pred CCCcceeeeecccCCCCceEEcccCCCC
Q 008363 375 RNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 375 ~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
.+. ..+.+..+++++..++.++....+
T Consensus 378 ~h~-~~v~~l~~~~~~~~l~sgs~D~~i 404 (410)
T 1vyh_C 378 AHE-HFVTSLDFHKTAPYVVTGSVDQTV 404 (410)
T ss_dssp CCS-SCEEEEEECSSSSCEEEEETTSEE
T ss_pred CCC-CcEEEEEEcCCCCEEEEEeCCCcE
Confidence 322 235566788888888777655444
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=275.93 Aligned_cols=268 Identities=15% Similarity=0.192 Sum_probs=220.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCC--------------ccCCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~--------------~~~~~ 158 (568)
..+|.+ .|++++|+|++. ....+|++|+.|++|+||++..+.. ...+.+|.. ++++.
T Consensus 28 ~~~H~~-~V~~v~~~~~~~------~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~ 100 (321)
T 3ow8_A 28 EQAHDD-AIWSVAWGTNKK------ENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100 (321)
T ss_dssp TTSSSS-CEEEEEEC-------------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccCCC-cEEEEEEecCCC------CCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC
Confidence 357988 666999998631 0016999999999999999987543 334555543 46788
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
++.+++|+..+ +...+..|...+ .+++|+ |++.+|++|+.||.|++|++..+ .....+..|...|.+++
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~------~~~~~~~~~~~~v~~~~ 171 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDA-WTLAFS--PDSQYLATGTHVGKVNIFGVESG------KKEYSLDTRGKFILSIA 171 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCC-CCEEEC--TTSSEEEEECTTSEEEEEETTTC------SEEEEEECSSSCEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccE-EEEEEC--CCCCEEEEEcCCCcEEEEEcCCC------ceeEEecCCCceEEEEE
Confidence 99999999865 445566788888 999999 88999999999999999999876 67778889999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
|+|++ ++||+++.|+ |++||++++ ..+..+.+|...|++++|+|++++|++++.|++|++||++.
T Consensus 172 ~spdg------~~lasg~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~------- 237 (321)
T 3ow8_A 172 YSPDG------KYLASGAIDGIINIFDIATG-KLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH------- 237 (321)
T ss_dssp ECTTS------SEEEEEETTSCEEEEETTTT-EEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT-------
T ss_pred ECCCC------CEEEEEcCCCeEEEEECCCC-cEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC-------
Confidence 99999 8999999999 999999987 88888999999999999999999999999999999999953
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
++ .+..+.+|...|.+++|+|++.+|++++.|++|++||+.++........+. ..+.+.++++++..|+.
T Consensus 238 -~~--------~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 238 -AN--------LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ-DQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp -CC--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-SCEEEEEECTTSSEEEE
T ss_pred -cc--------eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC-CcEEEEEECCCCCEEEE
Confidence 32 346889999999999999999999999999999999999887766543333 23456678888888887
Q ss_pred cccCCCC
Q 008363 396 NTPLDNT 402 (568)
Q Consensus 396 ~~~~~~~ 402 (568)
+.....+
T Consensus 308 ~~~d~~i 314 (321)
T 3ow8_A 308 VGDDQEI 314 (321)
T ss_dssp EETTCCE
T ss_pred EeCCCeE
Confidence 6655444
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.5e-32 Score=273.70 Aligned_cols=267 Identities=17% Similarity=0.185 Sum_probs=222.5
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
....+.+|.+ .|++++|+|++ .+|++|+.||+|+|||+.++..+..+..+.. +.+
T Consensus 47 ~~~~l~gH~~-~v~~~~~s~d~----------~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 115 (340)
T 1got_B 47 TRRTLRGHLA-KIYAMHWGTDS----------RLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115 (340)
T ss_dssp EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred hheeecCCCC-ceEEEEECCCC----------CEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEE
Confidence 4455679999 55699999999 8999999999999999999888877766544 456
Q ss_pred CCCceEEEeecce------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 157 TDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 157 ~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
+.++.+++|+... ....+.+|...| .++.|+ +++ .|++|+.||+|++||+.++ .++..+.+|..
T Consensus 116 ~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~------~~~~~~~~h~~ 185 (340)
T 1got_B 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFL--DDN-QIVTSSGDTTCALWDIETG------QQTTTFTGHTG 185 (340)
T ss_dssp ETTCEEEEEETTTCSBSCEEEEEEECCSSCE-EEEEEE--ETT-EEEEEETTSCEEEEETTTT------EEEEEECCCSS
T ss_pred eCCCeEEEEECccCCCcceeEEEecCCCccE-EEEEEC--CCC-cEEEEECCCcEEEEECCCC------cEEEEEcCCCC
Confidence 7888999998754 334567899999 999998 554 6999999999999999876 78889999999
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.|.+++|+|++ .+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||+|++||++.
T Consensus 186 ~v~~~~~~~~~------~~l~sg~~d~~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~- 257 (340)
T 1got_B 186 DVMSLSLAPDT------RLFVSGACDASAKLWDVREG-MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA- 257 (340)
T ss_dssp CEEEEEECTTS------SEEEEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-
T ss_pred ceEEEEECCCC------CEEEEEeCCCcEEEEECCCC-eeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC-
Confidence 99999999998 8999999999 999999987 78888999999999999999999999999999999999954
Q ss_pred ccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT 387 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~ 387 (568)
++. +..+. .+...|++++|+|++.+|++|+.||.|++||+.++........+. ..+.|.+++
T Consensus 258 -------~~~--------~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~-~~v~~~~~s 321 (340)
T 1got_B 258 -------DQE--------LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD-NRVSCLGVT 321 (340)
T ss_dssp -------TEE--------EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEEC
T ss_pred -------CcE--------EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC-CcEEEEEEc
Confidence 222 23433 233579999999999999999999999999998776554433332 245677889
Q ss_pred CCCCceEEcccCCCC
Q 008363 388 EDESAITVNTPLDNT 402 (568)
Q Consensus 388 ~~~~~i~~~~~~~~~ 402 (568)
+++..|+.++....+
T Consensus 322 ~dg~~l~s~s~D~~i 336 (340)
T 1got_B 322 DDGMAVATGSWDSFL 336 (340)
T ss_dssp TTSSCEEEEETTSCE
T ss_pred CCCCEEEEEcCCccE
Confidence 999888887765544
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=272.13 Aligned_cols=228 Identities=17% Similarity=0.289 Sum_probs=202.7
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCC
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDP 159 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~ 159 (568)
.+.+|...+. +++|+|++ .+|++++.|++|+|||+.+++++..+..+.. +.++.+
T Consensus 75 ~l~gh~~~v~-~~~~~~~~----------~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d 143 (321)
T 3ow8_A 75 SLEGHQLGVV-SVDISHTL----------PIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143 (321)
T ss_dssp EECCCSSCEE-EEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT
T ss_pred eeccCCCCEE-EEEECCCC----------CEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 4568998555 99999999 7999999999999999999988888765543 456778
Q ss_pred ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
+.+++|+... ....+..|...| .+++|+ |++.+|++|+.||+|++||+.++ +++..+.+|..+|.+++|
T Consensus 144 g~v~i~~~~~~~~~~~~~~~~~~v-~~~~~s--pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~ 214 (321)
T 3ow8_A 144 GKVNIFGVESGKKEYSLDTRGKFI-LSIAYS--PDGKYLASGAIDGIINIFDIATG------KLLHTLEGHAMPIRSLTF 214 (321)
T ss_dssp SEEEEEETTTCSEEEEEECSSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCCCEEEE
T ss_pred CcEEEEEcCCCceeEEecCCCceE-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC------cEEEEEcccCCceeEEEE
Confidence 8899998765 333456778888 999999 88999999999999999999876 888899999999999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
+|++ .+|++++.|+ |++||++.. ..+..+.+|...|.+++|+|++.+|++++.|++|++||++.
T Consensus 215 spd~------~~l~s~s~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~-------- 279 (321)
T 3ow8_A 215 SPDS------QLLVTASDDGYIKIYDVQHA-NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-------- 279 (321)
T ss_dssp CTTS------CEEEEECTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------
T ss_pred cCCC------CEEEEEcCCCeEEEEECCCc-ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC--------
Confidence 9999 8999999999 999999977 77788999999999999999999999999999999999953
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+ .++..+.+|...|++++|+|++.+|++++.||.|++||+
T Consensus 280 ~--------~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 280 R--------TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp T--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred C--------EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 4 345788999999999999999999999999999999997
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2e-31 Score=271.85 Aligned_cols=270 Identities=15% Similarity=0.162 Sum_probs=221.0
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
....+.+|.+ .|++++|+|++ .+||+|+.||+|+|||..++.....+..+.. +.+
T Consensus 56 ~~~~l~gH~~-~V~~~~~s~d~----------~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg 124 (354)
T 2pbi_B 56 TRRTLKGHGN-KVLCMDWCKDK----------RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACG 124 (354)
T ss_dssp EEEEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEE
T ss_pred EEEEecCCCC-eEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEe
Confidence 3455679999 55699999999 7999999999999999998887776655432 567
Q ss_pred CCCceEEEeecce--------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC
Q 008363 157 TDPRFVKLEPVFR--------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD 228 (568)
Q Consensus 157 ~~~~~v~~~~~~~--------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h 228 (568)
+.+..+.+|+... ....+.+|...| .+++|+ +++..|++|+.||+|++||+.++ +++..+.+|
T Consensus 125 ~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~------~~~~~~~~h 195 (354)
T 2pbi_B 125 GLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYL-SACSFT--NSDMQILTASGDGTCALWDVESG------QLLQSFHGH 195 (354)
T ss_dssp STTSEEEEEECCCCTTCCSGGGCEEEEECSSCE-EEEEEC--SSSSEEEEEETTSEEEEEETTTC------CEEEEEECC
T ss_pred eCCCCEEEEEEeccccccccccceeeeccCCcE-EEEEEe--CCCCEEEEEeCCCcEEEEeCCCC------eEEEEEcCC
Confidence 7888889987642 223445799999 999999 78889999999999999999877 788999999
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcc
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~ 307 (568)
...|.+++|+|.. ...+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.|++|++||++
T Consensus 196 ~~~v~~~~~~~~~----~g~~l~sgs~Dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 196 GADVLCLDLAPSE----TGNTFVSGGCDKKAMVWDMRSG-QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp SSCEEEEEECCCS----SCCEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCCeEEEEEEeCC----CCCEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 9999999998853 127999999999 999999987 7888899999999999999999999999999999999996
Q ss_pred ccccCCCCCCCCccCccccceEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeec
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGS 385 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s 385 (568)
. ++ .+..+.. +...+.+++|+|++.+|++++.|+.|++||+.++........+. ..+.+.+
T Consensus 271 ~--------~~--------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~-~~v~~l~ 333 (354)
T 2pbi_B 271 A--------DR--------EVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE-NRVSTLR 333 (354)
T ss_dssp T--------TE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SCEEEEE
T ss_pred C--------Cc--------EEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC-CcEEEEE
Confidence 4 21 1234433 34578999999999999999999999999998776544333322 3456678
Q ss_pred ccCCCCceEEcccCCCC
Q 008363 386 VTEDESAITVNTPLDNT 402 (568)
Q Consensus 386 ~~~~~~~i~~~~~~~~~ 402 (568)
+++++..|++++....+
T Consensus 334 ~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 334 VSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp ECTTSSCEEEEETTSEE
T ss_pred ECCCCCEEEEEcCCCCE
Confidence 89999998887765443
No 7
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.8e-32 Score=282.83 Aligned_cols=236 Identities=14% Similarity=0.236 Sum_probs=206.1
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
...+.+|.+ .|.+++|+|++ .+|++|+.||+|+|||+.+++++..+.+|.. ++++
T Consensus 143 ~~~l~~h~~-~V~~v~~~~~~----------~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s 211 (410)
T 1vyh_C 143 ERTLKGHTD-SVQDISFDHSG----------KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211 (410)
T ss_dssp CEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred EEEEeccCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 345568988 55599999999 7999999999999999999988888877654 5678
Q ss_pred CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.++.+++|+..+ +...+.+|...| .++.|+ +++.+|++|+.||+|++||+.+. .+...+.+|...|.++
T Consensus 212 ~D~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~------~~~~~~~~h~~~v~~~ 282 (410)
T 1vyh_C 212 RDKTIKMWEVQTGYCVKTFTGHREWV-RMVRPN--QDGTLIASCSNDQTVRVWVVATK------ECKAELREHRHVVECI 282 (410)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeCCCccE-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC------ceeeEecCCCceEEEE
Confidence 899999999876 566778999999 999988 88999999999999999999876 7888899999999999
Q ss_pred EEccCCCC--------------CCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363 236 SWAPAESD--------------SDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 236 ~~~p~~~~--------------~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~ 300 (568)
+|+|++.. .....+|++|+.|+ |++||++++ .++..+.+|...|++++|+|++++|++++.|++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 361 (410)
T 1vyh_C 283 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT 361 (410)
T ss_dssp EECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred EEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 99996300 00126899999999 999999987 888889999999999999999999999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
|++||++. +++ +..+.+|...|++++|+|++.+|++|+.||+|++|++
T Consensus 362 i~vwd~~~--------~~~--------~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 362 LRVWDYKN--------KRC--------MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEEECCTT--------SCC--------CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEEECCC--------Cce--------EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99999943 433 4688999999999999999999999999999999986
No 8
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=7e-32 Score=277.89 Aligned_cols=273 Identities=18% Similarity=0.263 Sum_probs=222.9
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
....+.+|.+ .|++++|+|++ .+|++|+.||+|+|||+.+++....+..|.. +.+
T Consensus 58 ~~~~l~gH~~-~V~~~~~sp~~----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~ 126 (380)
T 3iz6_a 58 CCRTLQGHSG-KVYSLDWTPEK----------NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACG 126 (380)
T ss_dssp EEEEECCCSS-CEEEEEECTTS----------SCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEEC
T ss_pred Eeeccccccc-EEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEe
Confidence 3455679999 55699999999 7999999999999999999988888877654 567
Q ss_pred CCCceEEEeecce---------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--
Q 008363 157 TDPRFVKLEPVFR---------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-- 225 (568)
Q Consensus 157 ~~~~~v~~~~~~~---------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-- 225 (568)
+.+..+++|+... ....+.+|...| .++.|.|. .+..|++|+.|++|++||+.++ ..+..+
T Consensus 127 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v-~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~------~~~~~~~~ 198 (380)
T 3iz6_a 127 GLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYA-SSCQYVPD-QETRLITGSGDQTCVLWDVTTG------QRISIFGS 198 (380)
T ss_dssp CSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCC-CCCBCCSS-SSSCEEEECTTSCEEEECTTTC------CEEEEECC
T ss_pred eCCCcEEEEECCCCccccCCccceeeccCCCcce-EEEEEecC-CCCEEEEECCCCcEEEEEcCCC------cEEEEeec
Confidence 8889999998753 234567999999 99999843 2457999999999999999977 666666
Q ss_pred ---eCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363 226 ---SADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 226 ---~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~ 300 (568)
.+|...|.+++|++ ++ ++|++|+.|+ |++||++....++..+.+|.+.|++++|+|++.+|++++.||+
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~------~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~ 272 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNA------NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSC------CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC
T ss_pred ccCCCCccCeEEEEeecCCC------CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe
Confidence 67999999999988 44 8999999999 9999999665788889999999999999999999999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCC-------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS-------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~-------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 373 (568)
|++||++. |+. +..+..+. ..|++++|+|++.+|++|+.||.|++||+..+......
T Consensus 273 i~lwd~~~--------~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 273 CRLFDMRT--------GHQ--------LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp EEEEETTT--------TEE--------EEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EEEEECCC--------CcE--------EEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 99999964 432 23444332 35899999999999999999999999999877654432
Q ss_pred C---CCCcceeeeecccCCCCceEEcccCCCCCc
Q 008363 374 S---RNRPMHFLCGSVTEDESAITVNTPLDNTPV 404 (568)
Q Consensus 374 ~---~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~ 404 (568)
. ......+.|.++++++..|+.++....+.+
T Consensus 337 ~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~i 370 (380)
T 3iz6_a 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370 (380)
T ss_dssp CCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEE
T ss_pred ecccCCCCCceEEEEECCCCCEEEEeeCCCCEEE
Confidence 1 112234567789999999998887766644
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=270.93 Aligned_cols=241 Identities=15% Similarity=0.230 Sum_probs=194.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
...|..+ |.+++|+|++ .|++|+.||+|+|||+.+++.+..+.. ..
T Consensus 78 ~~~~~~~-v~~~~~s~d~-----------~l~~~s~dg~v~lWd~~~~~~~~~~~~----------------------~~ 123 (344)
T 4gqb_B 78 GVQTEAG-VADLTWVGER-----------GILVASDSGAVELWELDENETLIVSKF----------------------CK 123 (344)
T ss_dssp EEEESSC-EEEEEEETTT-----------EEEEEETTSEEEEEEECTTSSCEEEEE----------------------EE
T ss_pred eeccCCC-EEEEEEeCCC-----------eEEEEECCCEEEEEeccCCCceeEeec----------------------cc
Confidence 4456664 4599999986 788999999999999999876654311 11
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+|...| ++|+|+ |+|++|++|+.||+|+|||+.++ +++..+.+|...|.+++|++++ ..+|++++
T Consensus 124 ~~H~~~V-~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~------~~~~~~~~h~~~V~~~~~~~~~-----~~~l~s~s 189 (344)
T 4gqb_B 124 YEHDDIV-STVSVL--SSGTQAVSGSKDICIKVWDLAQQ------VVLSSYRAHAAQVTCVAASPHK-----DSVFLSCS 189 (344)
T ss_dssp ECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECSSC-----TTEEEEEE
T ss_pred cCCCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEcCcCCceEEEEecCCC-----CCceeeec
Confidence 6899999 999999 89999999999999999999977 8899999999999999999997 26899999
Q ss_pred CCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 255 HGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
.|+ |++||++++ +++..+. .|...+++++|+|+ +++|++|+.||+|+|||++. +++ +..
T Consensus 190 ~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~--------~~~--------~~~ 252 (344)
T 4gqb_B 190 EDNRILLWDTRCP-KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS--------TSC--------VLS 252 (344)
T ss_dssp TTSCEEEEETTSS-SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------C--------CEE
T ss_pred ccccccccccccc-ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCC--------CcE--------EEE
Confidence 999 999999987 6655543 45667899999995 56788899999999999954 544 468
Q ss_pred EecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCce-EEcccCCCC
Q 008363 331 VNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAI-TVNTPLDNT 402 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i-~~~~~~~~~ 402 (568)
+.+|...|++++|+|++ .+|++|+.|++|+|||+.++++... ..+. ..+.+.++++++..+ +.++....+
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~-~~H~-~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHR-DFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEE-CCCS-SCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEE-cCCC-CCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 99999999999999997 6899999999999999998876543 2222 235566788888764 455554444
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-31 Score=270.86 Aligned_cols=214 Identities=18% Similarity=0.332 Sum_probs=184.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+.+|.++.+++++|+|++ .+||+|+.|++|+|||+.++......
T Consensus 8 ~~~~~~h~~~~v~~l~~sp~g----------~~las~~~D~~i~iw~~~~~~~~~~~----------------------- 54 (345)
T 3fm0_A 8 LGRVPAHPDSRCWFLAWNPAG----------TLLASCGGDRRIRIWGTEGDSWICKS----------------------- 54 (345)
T ss_dssp EEEECCSTTSCEEEEEECTTS----------SCEEEEETTSCEEEEEEETTEEEEEE-----------------------
T ss_pred eeeecCCCCCcEEEEEECCCC----------CEEEEEcCCCeEEEEEcCCCcceeee-----------------------
Confidence 445668988678899999999 89999999999999999876533221
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
....+|...| .+++|+ |++.+|++|+.|++|+|||+.... ..++..+.+|...|.+++|+|++ ++|+
T Consensus 55 ~~~~~h~~~v-~~~~~s--p~g~~l~s~s~D~~v~iw~~~~~~----~~~~~~~~~h~~~v~~v~~sp~~------~~l~ 121 (345)
T 3fm0_A 55 VLSEGHQRTV-RKVAWS--PCGNYLASASFDATTCIWKKNQDD----FECVTTLEGHENEVKSVAWAPSG------NLLA 121 (345)
T ss_dssp EECSSCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEEECCC-----EEEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred eeccccCCcE-EEEEEC--CCCCEEEEEECCCcEEEEEccCCC----eEEEEEccCCCCCceEEEEeCCC------CEEE
Confidence 0116899999 999999 889999999999999999998652 25678899999999999999999 8999
Q ss_pred EEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 252 TAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+++.|+ |++||++... .++..+.+|...|++++|+|++.+|++++.|++|++||++. +.. .++
T Consensus 122 s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~--------~~~------~~~ 187 (345)
T 3fm0_A 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE--------DDW------VCC 187 (345)
T ss_dssp EEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEET--------TEE------EEE
T ss_pred EEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecC--------CCE------EEE
Confidence 999999 9999998753 34567889999999999999999999999999999999853 211 234
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..+.+|...|++++|+|++.+|++++.|++|+||++.
T Consensus 188 ~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 188 ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 6888999999999999999999999999999999974
No 11
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.5e-31 Score=263.02 Aligned_cols=252 Identities=15% Similarity=0.185 Sum_probs=198.9
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeeccee
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
..+.+|.+ .|++++|+|++ ++||+|+.|++|+|||+.. .+++..+
T Consensus 3 ~~~~~h~~-~V~~~~~s~~g----------~~las~s~D~~v~iw~~~~~~~~~~~~l---------------------- 49 (297)
T 2pm7_B 3 VIANAHNE-MIHDAVMDYYG----------KRMATCSSDKTIKIFEVEGETHKLIDTL---------------------- 49 (297)
T ss_dssp EECCSCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEEBCSSCBCCCEEE----------------------
T ss_pred eeccCCcC-ceEEEEECCCC----------CEEEEEeCCCEEEEEecCCCCcEEEEEE----------------------
Confidence 34568988 56699999999 8999999999999999975 2444444
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCc
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSAN 248 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~ 248 (568)
.+|...| ++++|++..++.+|++|+.||+|+|||+.++.. ..+..+.+|...|.+++|+|+ + .
T Consensus 50 ----~gH~~~V-~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~v~~v~~~p~~~g------~ 114 (297)
T 2pm7_B 50 ----TGHEGPV-WRVDWAHPKFGTILASCSYDGKVMIWKEENGRW----SQIAVHAVHSASVNSVQWAPHEYG------P 114 (297)
T ss_dssp ----CCCSSCE-EEEEECCGGGCSEEEEEETTTEEEEEEBSSSCB----CCCEEECCCSSCEEEEEECCGGGC------S
T ss_pred ----ccccCCe-EEEEecCCCcCCEEEEEcCCCEEEEEEcCCCce----EEEEEeecCCCceeEEEeCcCCCC------c
Confidence 7899999 999998333478999999999999999986522 456778899999999999997 6 7
Q ss_pred EEEEEcCCC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCC-------------CCEEEEEeCCCcEEEEEccccccCC
Q 008363 249 VILTAGHGG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPD-------------PGCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~-------------~~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
+|++++.|+ |++||++.... ....+.+|...|++++|+|+ +++|++|+.|++|+|||++.
T Consensus 115 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~----- 189 (297)
T 2pm7_B 115 MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS----- 189 (297)
T ss_dssp EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEET-----
T ss_pred EEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-----
Confidence 999999999 99999987632 24567799999999999997 57999999999999999954
Q ss_pred CCCCCCccCccccceEEEecCCCCEEEEEEecCC---CEEEEEeCCCeEEEEEcCCCee--e-ccCC-CCCcceeeeecc
Q 008363 314 PATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---GMVAYCSADGTVHRFQLTAKAV--E-KDHS-RNRPMHFLCGSV 386 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~~l~s~s~Dg~v~iwd~~~~~~--~-~~~~-~~~~~~~~~~s~ 386 (568)
++.. ...+..+.+|...|++++|+|++ .+|++++.|++|+|||+.+... . .... ........+.++
T Consensus 190 ---~~~~----~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 190 ---DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp ---TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEE
T ss_pred ---CCce----EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEE
Confidence 2210 02346788999999999999984 8999999999999999976421 1 1110 111223456688
Q ss_pred cCCCCceEEcccCCCCCc
Q 008363 387 TEDESAITVNTPLDNTPV 404 (568)
Q Consensus 387 ~~~~~~i~~~~~~~~~~~ 404 (568)
++++..|+++.....+.+
T Consensus 263 s~~g~~las~~~D~~v~l 280 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTL 280 (297)
T ss_dssp CSSSCCEEEEETTSCEEE
T ss_pred CCCCCEEEEEcCCCcEEE
Confidence 899988888776655543
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.3e-31 Score=270.00 Aligned_cols=204 Identities=13% Similarity=0.186 Sum_probs=174.5
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.+ .|++|+|+|++ .+|++|+.||+|+|||+.+++++..+
T Consensus 123 ~~~H~~-~V~~v~~spdg----------~~l~sgs~d~~i~iwd~~~~~~~~~~-------------------------- 165 (344)
T 4gqb_B 123 KYEHDD-IVSTVSVLSSG----------TQAVSGSKDICIKVWDLAQQVVLSSY-------------------------- 165 (344)
T ss_dssp EECCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred ccCCCC-CEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence 458988 56699999999 89999999999999999999888777
Q ss_pred cCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| ++++|+ +++ .+|++|+.||+|+|||++++ ++...+ ..|...+.+++|+|.+ ..+|+
T Consensus 166 ~~h~~~V-~~~~~~--~~~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~p~~-----~~~l~ 231 (344)
T 4gqb_B 166 RAHAAQV-TCVAAS--PHKDSVFLSCSEDNRILLWDTRCP------KPASQIGCSAPGYLPTSLAWHPQQ-----SEVFV 231 (344)
T ss_dssp CCCSSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTSS------SCEEECC----CCCEEEEEECSSC-----TTEEE
T ss_pred cCcCCce-EEEEec--CCCCCceeeecccccccccccccc------ceeeeeecceeeccceeeeecCCC-----CcceE
Confidence 8899999 999999 655 48899999999999999977 555555 3466679999999976 27999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+|+.|+ |+|||++++ .++..+.+|...|++++|+|++ ++|++++.|++|+|||++. +++ .
T Consensus 232 sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~--------~~~---------~ 293 (344)
T 4gqb_B 232 FGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--------SEL---------F 293 (344)
T ss_dssp EEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTC--------CEE---------E
T ss_pred EeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCC--------CcE---------E
Confidence 999999 999999987 8888999999999999999998 5789999999999999953 432 4
Q ss_pred EEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCC
Q 008363 330 LVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~ 367 (568)
.+.+|...|++++|+|++. +|+++|.||+|++|++.+.
T Consensus 294 ~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 294 RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 6789999999999999985 6789999999999999654
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-30 Score=264.59 Aligned_cols=230 Identities=13% Similarity=0.155 Sum_probs=196.4
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc----eeeEEeccCC-------------
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR----TMKAIYLSSM------------- 153 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~----~~~~l~~~~~------------- 153 (568)
.+.....|.. .+.+++|+|++ .+|++|+.|+.|+||++.+.. ....+.+|..
T Consensus 89 ~~~~~~~~~~-~v~~~~~s~~~----------~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l 157 (340)
T 1got_B 89 KVHAIPLRSS-WVMTCAYAPSG----------NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQI 157 (340)
T ss_dssp EEEEEECSSS-CEEEEEECTTS----------SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEE
T ss_pred cceEeecCCc-cEEEEEECCCC----------CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcE
Confidence 3445567877 55599999999 899999999999999998742 3444545443
Q ss_pred ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363 154 KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 231 (568)
+.++.++.+++|+..+ +...+.+|...| .+++|+ |++.+|++|+.||+|++||++++ .++..+.+|...
T Consensus 158 ~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~ 228 (340)
T 1got_B 158 VTSSGDTTCALWDIETGQQTTTFTGHTGDV-MSLSLA--PDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESD 228 (340)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSC
T ss_pred EEEECCCcEEEEECCCCcEEEEEcCCCCce-EEEEEC--CCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCC
Confidence 4567889999999865 555678999999 999999 88999999999999999999876 788899999999
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
|.+++|+|++ .+|++|+.|+ |++||++.. ..+..+. .+...|++++|+|++++|++|+.|+.|++||+..
T Consensus 229 v~~v~~~p~~------~~l~s~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 229 INAICFFPNG------NAFATGSDDATCRLFDLRAD-QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp EEEEEECTTS------SEEEEEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEEcCCC------CEEEEEcCCCcEEEEECCCC-cEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEccc
Confidence 9999999999 8999999999 999999976 5555543 3345799999999999999999999999999953
Q ss_pred cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
++ .+..+.+|...|++++|+|++.+|++|+.||.|+|||
T Consensus 302 --------~~--------~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 302 --------AD--------RAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------CC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------Cc--------EeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 32 3468899999999999999999999999999999996
No 14
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-31 Score=281.88 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=169.2
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.|.+ .|++|+|+|++. ......+||+++.||+|+|||+.++....... . ........+.+
T Consensus 205 ~~~~-~V~~v~wsp~~~----~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~------------~---~~~~p~~~l~~ 264 (524)
T 2j04_B 205 HSFG-EVWDLKWHEGCH----APHLVGCLSFVSQEGTINFLEIIDNATDVHVF------------K---MCEKPSLTLSL 264 (524)
T ss_dssp ECCC-SEEEEEECSSCC----CSSSSCEEEEEETTSCEEEEECCCCSSSSSEE------------E---CCCSCSEEECC
T ss_pred ecCC-cEEEEEECCCCC----CCCCCceEEEEecCCeEEEEEcCCCccccccc------------e---eecCceEEEEc
Confidence 4455 677999999720 00011699999999999999998754321000 0 00000112378
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE--EEccCCCCCCCCcEEEEEc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV--SWAPAESDSDSANVILTAG 254 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v--~~~p~~~~~~~~~~las~s 254 (568)
|...| ++++|+ ++ ..|++|+.||+|++||+.++ ..+...+.+|...|.+| +|+|++ +.+||||+
T Consensus 265 h~~~v-~sv~~s--~~-~~lasgs~DgtV~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g-----~~~laS~S 330 (524)
T 2j04_B 265 ADSLI-TTFDFL--SP-TTVVCGFKNGFVAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFE-----DTVVSTVA 330 (524)
T ss_dssp TTTCE-EEEEES--SS-SEEEEEETTSEEEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTS-----CCEEEEEE
T ss_pred CCCCE-EEEEec--CC-CeEEEEeCCCEEEEEECCCC-----CCceEEeecccccEEEEEEEcCCCC-----CeEEEEec
Confidence 88999 999999 55 48999999999999999865 13556788999999999 466764 16999999
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
.|+ |+|||+++. .++..+.+|.. .|.+++|+|++..|++++.|++|++||++. +.+ +..+
T Consensus 331 ~D~tvklWD~~~~-~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~--------~~~--------~~~l 393 (524)
T 2j04_B 331 VDGYFYIFNPKDI-ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA--------AFA--------VHPL 393 (524)
T ss_dssp TTSEEEEECGGGH-HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC--------TTC--------CEEE
T ss_pred cCCeEEEEECCCC-CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc--------ccc--------ceee
Confidence 999 999999976 55555555543 578999999999999999999999999964 332 3578
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
.+|...|++|+|+|++++|++|+.||+|++||+..
T Consensus 394 ~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 394 VSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 89999999999999999999999999999999854
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.3e-30 Score=259.93 Aligned_cols=237 Identities=14% Similarity=0.140 Sum_probs=194.9
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.+|.+ .|++++|+|+++ .+|++|+.|++|++|++........ . ....
T Consensus 12 ~l~gH~~-~V~~l~~~~~~~---------~~l~s~s~D~~v~~W~~~~~~~~~~-----------------~----~~~~ 60 (319)
T 3frx_A 12 TLEGHNG-WVTSLATSAGQP---------NLLLSASRDKTLISWKLTGDDQKFG-----------------V----PVRS 60 (319)
T ss_dssp EECCCSS-CEEEEEECSSCT---------TEEEEEETTSEEEEEEEEEETTEEE-----------------E----EEEE
T ss_pred EEccccc-eEEEEEccCCCc---------cEEEEecCCccEEEecCCCCCcccc-----------------c----cceE
Confidence 3568999 555999999765 7999999999999999865221100 0 0112
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+.+|...| .+++|+ +++.+|++|+.||+|+|||+.++ +++..+.+|...|.+++|+|++ .+|+++
T Consensus 61 ~~~h~~~v-~~~~~s--~dg~~l~s~s~D~~v~~wd~~~~------~~~~~~~~h~~~v~~~~~~~~~------~~l~s~ 125 (319)
T 3frx_A 61 FKGHSHIV-QDCTLT--ADGAYALSASWDKTLRLWDVATG------ETYQRFVGHKSDVMSVDIDKKA------SMIISG 125 (319)
T ss_dssp EECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECTTS------CEEEEE
T ss_pred EeCCcccE-EEEEEC--CCCCEEEEEeCCCEEEEEECCCC------CeeEEEccCCCcEEEEEEcCCC------CEEEEE
Confidence 27899999 999999 88999999999999999999977 8888999999999999999998 899999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC------CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD------PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~------~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
+.|+ |++||++. .++..+.+|...|.+++|+|. +..|++++.|+.|++||++. + +
T Consensus 126 s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~--------~--------~ 187 (319)
T 3frx_A 126 SRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ--------F--------Q 187 (319)
T ss_dssp ETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--------T--------E
T ss_pred eCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--------c--------h
Confidence 9999 99999974 567788899999999999995 45899999999999999954 2 2
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
....+.+|...|++++|+|++.+|++++.||.|++||+.++........+ ..+.+.++++++..++.+
T Consensus 188 ~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--DEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--SCEEEEEECSSSSEEEEE
T ss_pred hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CcEEEEEEcCCCCEEEEE
Confidence 34578899999999999999999999999999999999887665443322 234455677777666544
No 16
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.98 E-value=1.2e-29 Score=253.32 Aligned_cols=213 Identities=17% Similarity=0.283 Sum_probs=188.7
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
...+.+|.+ .|.+++|+|++ .+|++|+.||.|+||++.+++....+
T Consensus 16 ~~~~~gh~~-~v~~~~~s~~~----------~~l~s~~~dg~i~iw~~~~~~~~~~~----------------------- 61 (312)
T 4ery_A 16 KFTLAGHTK-AVSSVKFSPNG----------EWLASSSADKLIKIWGAYDGKFEKTI----------------------- 61 (312)
T ss_dssp EEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred EEEEcccCC-cEEEEEECCCC----------CEEEEeeCCCeEEEEeCCCcccchhh-----------------------
Confidence 444678988 55599999999 79999999999999999998877666
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| .+++|+ |++++|++|+.||.|++||+.++ .++..+.+|...|.+++|+|++ .+|+
T Consensus 62 ---~~h~~~v-~~~~~~--~~~~~l~s~~~d~~i~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~ 123 (312)
T 4ery_A 62 ---SGHKLGI-SDVAWS--SDSNLLVSASDDKTLKIWDVSSG------KCLKTLKGHSNYVFCCNFNPQS------NLIV 123 (312)
T ss_dssp ---CCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSS------SEEE
T ss_pred ---ccCCCce-EEEEEc--CCCCEEEEECCCCEEEEEECCCC------cEEEEEcCCCCCEEEEEEcCCC------CEEE
Confidence 7888899 999999 88999999999999999999876 7888999999999999999998 8999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+++.|+ |++||+++. ..+..+..|...|.+++|+|++.+|++++.||.|++||++. ++. +..
T Consensus 124 s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--------~~~--------~~~ 186 (312)
T 4ery_A 124 SGSFDESVRIWDVKTG-KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--------GQC--------LKT 186 (312)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CCE--------EEE
T ss_pred EEeCCCcEEEEECCCC-EEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--------Cce--------eeE
Confidence 999999 999999987 77888889999999999999999999999999999999954 333 233
Q ss_pred E-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccC
Q 008363 331 V-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 331 ~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~ 373 (568)
+ ..+...+..++|+|++.+|++++.||.|++||+.++......
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 187 LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp ECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 3 456678999999999999999999999999999887765543
No 17
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.98 E-value=6.6e-30 Score=279.84 Aligned_cols=271 Identities=14% Similarity=0.155 Sum_probs=205.7
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccC
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEG 156 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~ 156 (568)
..+.+|.+ .|++++|+|++ .+||+|+.||+|+|||+.+++ ....+.+|.. +.+
T Consensus 53 ~~~~~h~~-~v~~~~~spdg----------~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~ 121 (611)
T 1nr0_A 53 EIYTEHSH-QTTVAKTSPSG----------YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAV 121 (611)
T ss_dssp EEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred eEecCCCC-ceEEEEECCCC----------cEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEE
Confidence 34568998 45599999999 899999999999999997543 3344444433 111
Q ss_pred CC----CceEEEeecceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC
Q 008363 157 TD----PRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 157 ~~----~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~ 231 (568)
+. ...+.+|+...+...+.+|...| ++++|+ |++. +|++|+.|++|++||.... +++..+.+|...
T Consensus 122 ~~~~~~~~~v~~wd~~~~~~~l~gh~~~v-~~v~f~--p~~~~~l~s~s~D~~v~lwd~~~~------~~~~~l~~H~~~ 192 (611)
T 1nr0_A 122 GEGRERFGHVFLFDTGTSNGNLTGQARAM-NSVDFK--PSRPFRIISGSDDNTVAIFEGPPF------KFKSTFGEHTKF 192 (611)
T ss_dssp ECCSSCSEEEEETTTCCBCBCCCCCSSCE-EEEEEC--SSSSCEEEEEETTSCEEEEETTTB------EEEEEECCCSSC
T ss_pred ECCCCceeEEEEeeCCCCcceecCCCCCc-eEEEEC--CCCCeEEEEEeCCCeEEEEECCCC------eEeeeeccccCc
Confidence 11 24678888766777788999999 999999 7765 6999999999999998755 788899999999
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~l 303 (568)
|.+++|+|++ .+||+++.|+ |++||+.++ .++..+. +|.+.|++++|+|++++|++++.|++|+|
T Consensus 193 V~~v~fspdg------~~las~s~D~~i~lwd~~~g-~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l 265 (611)
T 1nr0_A 193 VHSVRYNPDG------SLFASTGGDGTIVLYNGVDG-TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265 (611)
T ss_dssp EEEEEECTTS------SEEEEEETTSCEEEEETTTC-CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEECCCC------CEEEEEECCCcEEEEECCCC-cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999999 8999999999 999999877 5565553 79999999999999999999999999999
Q ss_pred EEccccccCCCC-CCCCcc--------------------------CccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363 304 VSLLKAAYDVPA-TGKPFA--------------------------GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356 (568)
Q Consensus 304 wd~~~~~~~~~~-~g~~~~--------------------------~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D 356 (568)
||++....-... .+.... .....++..+.+|...|++++|+|++++|++++.|
T Consensus 266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D 345 (611)
T 1nr0_A 266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE 345 (611)
T ss_dssp EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence 998642100000 000000 00011345667899999999999999999999999
Q ss_pred CeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 357 GTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 357 g~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
++|++||+.++.............+.+..++.++
T Consensus 346 ~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~ 379 (611)
T 1nr0_A 346 GHINSWDISTGISNRVFPDVHATMITGIKTTSKG 379 (611)
T ss_dssp SCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCceeeecccCCcceEEEEEECCCC
Confidence 9999999988766543222222233444555443
No 18
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=2.5e-30 Score=264.02 Aligned_cols=263 Identities=18% Similarity=0.216 Sum_probs=204.5
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeC------CCcEEEEECCCCceee----EEeccCC------------
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG------NGSLEVWEVPLLRTMK----AIYLSSM------------ 153 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~------dg~V~iwd~~~~~~~~----~l~~~~~------------ 153 (568)
.+|.+ .|.+|+|+|+| .+||+|+. |+.|++|+..++.... ...++..
T Consensus 39 ~~H~~-~V~~v~fSpDG----------~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 39 ACMEV-QIGAVRYRRDG----------ALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG 107 (357)
T ss_dssp -CCCS-EEEEEEECSSS----------CEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE
T ss_pred ccccC-CEEEEEECCCC----------CEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC
Confidence 46888 56699999999 89999998 7889999987753221 1122221
Q ss_pred -ccCCCCceEEEeecceec------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee
Q 008363 154 -KEGTDPRFVKLEPVFRCS------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS 226 (568)
Q Consensus 154 -~~~~~~~~v~~~~~~~~~------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 226 (568)
+.++.++.|++|++.+.. ....+|...| ++|+|+ |++.+|++|+.||+|+|||+.++ .++..+.
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V-~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~------~~~~~~~ 178 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIV-KTLSVF--SDGTQAVSGGKDFSVKVWDLSQK------AVLKSYN 178 (357)
T ss_dssp EEEEETTSCEEEC--------CCCCEEECCCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEETTTT------EEEEEEC
T ss_pred EEEEECCCEEEEeeccccceeEEEeeccCCCCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEECCCC------cEEEEEc
Confidence 456678899999876521 1234899999 999999 88999999999999999999977 8889999
Q ss_pred CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee--eeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEE
Q 008363 227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW--DIHPAPKFIYGLDWLPDP-GCVILSFDDGAMR 302 (568)
Q Consensus 227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~--~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~ 302 (568)
+|...|++++|++++ ..+|++++.|+ |++||++++ .++. .+..|...+++++|+|++ .+|++|+.|+.|+
T Consensus 179 ~h~~~v~~v~~s~~~-----~~~~~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 179 AHSSEVNCVAACPGK-----DTIFLSCGEDGRILLWDTRKP-KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp CCSSCEEEEEECTTC-----SSCEEEEETTSCEEECCTTSS-SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred CCCCCEEEEEEccCC-----CceeeeeccCCceEEEECCCC-ceeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 999999999999987 25899999998 999999987 4443 344677889999999975 6788899999999
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeeeccCCCCCccee
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHF 381 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 381 (568)
+||++. ++ ++..+.+|...|++++|+|++ .+|++++.||+|+|||+.+++..+.. .+. ..+
T Consensus 253 ~wd~~~--------~~--------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~-~~V 314 (357)
T 4g56_B 253 LVNIKN--------PD--------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHR-DFV 314 (357)
T ss_dssp EEESSC--------GG--------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCS-SCE
T ss_pred EEECCC--------Cc--------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCC-CCE
Confidence 999954 43 346889999999999999997 68999999999999999988776543 222 234
Q ss_pred eeecccC-CCCceEEcccCCCC
Q 008363 382 LCGSVTE-DESAITVNTPLDNT 402 (568)
Q Consensus 382 ~~~s~~~-~~~~i~~~~~~~~~ 402 (568)
.+.++++ ++..|+.++....+
T Consensus 315 ~~vafsP~d~~~l~s~s~Dg~v 336 (357)
T 4g56_B 315 TGVAWSPLDHSKFTTVGWDHKV 336 (357)
T ss_dssp EEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEeCCCCCEEEEEcCCCeE
Confidence 5667886 67777777665555
No 19
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.9e-30 Score=256.55 Aligned_cols=278 Identities=12% Similarity=0.119 Sum_probs=203.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEE-ec-cCC--------------
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAI-YL-SSM-------------- 153 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l-~~-~~~-------------- 153 (568)
+..+.+|.+ .|++++|+|+ +||+|+.||+|+|||+..+ .....+ .. |..
T Consensus 7 ~~~~~~h~~-~v~~~~~s~~------------~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 7 IKSLKLYKE-KIWSFDFSQG------------ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp EEEEECCSS-CEEEEEEETT------------EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred ceeeccCCC-ceeeeccCCC------------EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE
Confidence 445678998 6669999864 7999999999999999874 344444 22 332
Q ss_pred ccCCCCceEEEeecc---------eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363 154 KEGTDPRFVKLEPVF---------RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC 224 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~---------~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 224 (568)
+.++.++.+++|+.. .+...+.+|...| ++++|+ |++.+|++|+.||+|+|||+..... ...++..
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V-~~v~~s--p~g~~las~s~D~~v~iwd~~~~~~--~~~~~~~ 148 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEV-KGVAWS--NDGYYLATCSRDKSVWIWETDESGE--EYECISV 148 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC----CE-EEEEEC--TTSCEEEEEETTSCEEEEECCTTCC--CCEEEEE
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcE-EEEEEC--CCCCEEEEEeCCCEEEEEeccCCCC--CeEEEEE
Confidence 567789999999873 2445567999999 999999 8899999999999999999953211 1356778
Q ss_pred eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCc
Q 008363 225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGA 300 (568)
Q Consensus 225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~ 300 (568)
+.+|...|.+++|+|++ .+|++++.|+ |++||++... .++..+.+|.+.|.+++|+|+ +.+|++++.|++
T Consensus 149 ~~~h~~~v~~v~~~p~~------~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~ 222 (330)
T 2hes_X 149 LQEHSQDVKHVIWHPSE------ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST 222 (330)
T ss_dssp ECCCSSCEEEEEECSSS------SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC
T ss_pred eccCCCceEEEEECCCC------CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe
Confidence 89999999999999998 8999999999 9999987642 467888999999999999998 778999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec---cCCCC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK---DHSRN 376 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~---~~~~~ 376 (568)
|++||++..... +. ....++..+.+ |...|++++|++++ +|++++.||.|++|++.++.... ....+
T Consensus 223 v~iw~~~~~~~~----~~----~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 223 VRVWKYMGDDED----DQ----QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEEEEEEEECTT----SC----EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred EEEEEecCCCcc----cc----ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 999999642210 00 00122344544 89999999999654 89999999999999997764211 11122
Q ss_pred CcceeeeecccC--CCCceEEcccCCCC
Q 008363 377 RPMHFLCGSVTE--DESAITVNTPLDNT 402 (568)
Q Consensus 377 ~~~~~~~~s~~~--~~~~i~~~~~~~~~ 402 (568)
....+.+.++++ ++..|+.++....+
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v 321 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIV 321 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcE
Confidence 222344556666 56667666555444
No 20
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.97 E-value=6.6e-30 Score=260.50 Aligned_cols=205 Identities=13% Similarity=0.225 Sum_probs=181.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.....+|.+ .+.+++|+|++ ..|++++.||+|+|||+.+++++..+
T Consensus 147 ~~~~~~h~~-~v~~~~~~~~~----------~~l~t~s~D~~v~lwd~~~~~~~~~~----------------------- 192 (354)
T 2pbi_B 147 KKSVAMHTN-YLSACSFTNSD----------MQILTASGDGTCALWDVESGQLLQSF----------------------- 192 (354)
T ss_dssp CEEEEECSS-CEEEEEECSSS----------SEEEEEETTSEEEEEETTTCCEEEEE-----------------------
T ss_pred ceeeeccCC-cEEEEEEeCCC----------CEEEEEeCCCcEEEEeCCCCeEEEEE-----------------------
Confidence 334567888 55699999999 79999999999999999999888776
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| .+++|+|.+++.+|++|+.||+|++||++++ .++..+.+|...|.+++|+|++ .+|+
T Consensus 193 ---~~h~~~v-~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~~~p~~------~~l~ 256 (354)
T 2pbi_B 193 ---HGHGADV-LCLDLAPSETGNTFVSGGCDKKAMVWDMRSG------QCVQAFETHESDVNSVRYYPSG------DAFA 256 (354)
T ss_dssp ---ECCSSCE-EEEEECCCSSCCEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred ---cCCCCCe-EEEEEEeCCCCCEEEEEeCCCeEEEEECCCC------cEEEEecCCCCCeEEEEEeCCC------CEEE
Confidence 7888888 9999997767889999999999999999977 7888999999999999999998 8999
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+++.|+ |++||++.. ..+..+.. +...+++++|+|++++|++++.|+.|++||++. ++. +
T Consensus 257 s~s~D~~v~lwd~~~~-~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~--------~~~--------~ 319 (354)
T 2pbi_B 257 SGSDDATCRLYDLRAD-REVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLK--------GSR--------V 319 (354)
T ss_dssp EEETTSCEEEEETTTT-EEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTT--------CSE--------E
T ss_pred EEeCCCeEEEEECCCC-cEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCC--------Cce--------E
Confidence 999999 999999976 55555543 345789999999999999999999999999943 433 4
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
..+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus 320 ~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 320 SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 68889999999999999999999999999999995
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=2.2e-29 Score=255.43 Aligned_cols=211 Identities=12% Similarity=0.120 Sum_probs=175.5
Q ss_pred EEEeeccCCceeeEEEE-----cc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEe
Q 008363 92 VVLCLAHNGKVAWDVKW-----KP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLE 165 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~-----sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~ 165 (568)
...+.+|.+ .|++++| ++ ++ .+|++|+.|++|+|||+.........
T Consensus 14 ~~~l~gH~~-~V~~~~~~~s~~~~~d~----------~~l~sgs~D~~v~iWd~~~~~~~~~~----------------- 65 (343)
T 2xzm_R 14 RGILEGHSD-WVTSIVAGFSQKENEDS----------PVLISGSRDKTVMIWKLYEEEQNGYF----------------- 65 (343)
T ss_dssp EEEEECCSS-CEEEEEECCCSSTTCCC----------CEEEEEETTSCEEEEEECSSCCSSBS-----------------
T ss_pred eeeeccchh-hhhheeeEEEeecCCCC----------CEEEEEcCCCEEEEEECCcCCccccc-----------------
Confidence 334678999 5669999 66 66 79999999999999999763311000
Q ss_pred ecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 166 PVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 166 ~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
......+.+|...| .+++|+ |++.+|++|+.||+|+|||+.++ .++..+.+|...|.+++|+|++
T Consensus 66 --~~~~~~l~~h~~~V-~~~~~~--~~~~~l~s~s~D~~v~lwd~~~~------~~~~~~~~h~~~v~~v~~sp~~---- 130 (343)
T 2xzm_R 66 --GIPHKALTGHNHFV-SDLALS--QENCFAISSSWDKTLRLWDLRTG------TTYKRFVGHQSEVYSVAFSPDN---- 130 (343)
T ss_dssp --EEEEEEECCCSSCE-EEEEEC--SSTTEEEEEETTSEEEEEETTSS------CEEEEEECCCSCEEEEEECSST----
T ss_pred --ccccchhccCCCce-EEEEEC--CCCCEEEEEcCCCcEEEEECCCC------cEEEEEcCCCCcEEEEEECCCC----
Confidence 00011227899999 999999 88999999999999999999976 7888999999999999999999
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcceeee---CCCCCCeEEEEEcCCC----------CEEEEEeCCCcEEEEEcccccc
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRPLWDI---HPAPKFIYGLDWLPDP----------GCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~~~~~---~~h~~~i~~l~~sp~~----------~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
.+|++++.|+ |++||+... ..... .+|...|.+++|+|++ .+|++++.|+.|++||..
T Consensus 131 --~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~---- 202 (343)
T 2xzm_R 131 --RQILSAGAEREIKLWNILGE--CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN---- 202 (343)
T ss_dssp --TEEEEEETTSCEEEEESSSC--EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----
T ss_pred --CEEEEEcCCCEEEEEeccCC--ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----
Confidence 8999999999 999999843 22222 3788999999999987 789999999999999963
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+ ..+..+.+|...|++++|+|++.+|++++.||.|++||+..
T Consensus 203 -----~--------~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 203 -----F--------QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp -----T--------EEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred -----C--------ceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 2 33467889999999999999999999999999999999943
No 22
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.97 E-value=7e-31 Score=263.33 Aligned_cols=252 Identities=12% Similarity=0.126 Sum_probs=193.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCce--eeEEeccCCccCCCCceEEEeecceecc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRT--MKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~--~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..+|.+ .|++++|+|++ ++||+|+.|++|+|||+.++.. +..+
T Consensus 9 ~~~H~~-~V~~v~~s~~g----------~~lasgs~D~~v~lwd~~~~~~~~~~~l------------------------ 53 (316)
T 3bg1_A 9 DTSHED-MIHDAQMDYYG----------TRLATCSSDRSVKIFDVRNGGQILIADL------------------------ 53 (316)
T ss_dssp -----C-CEEEEEECGGG----------CEEEEEETTTEEEEEEEETTEEEEEEEE------------------------
T ss_pred cccccC-eEEEeeEcCCC----------CEEEEEeCCCeEEEEEecCCCcEEEEEE------------------------
Confidence 358988 56699999999 8999999999999999987542 3333
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+|...| ++++|++..++.+|++|+.|++|+|||+.++.. ..+..+.+|...|.+++|+|+. ...+|++
T Consensus 54 --~gH~~~V-~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~----~~~~~~~~h~~~V~~v~~~p~~----~g~~las 122 (316)
T 3bg1_A 54 --RGHEGPV-WQVAWAHPMYGNILASCSYDRKVIIWREENGTW----EKSHEHAGHDSSVNSVCWAPHD----YGLILAC 122 (316)
T ss_dssp --ECCSSCE-EEEEECCGGGSSCEEEEETTSCEEEECCSSSCC----CEEEEECCCSSCCCEEEECCTT----TCSCEEE
T ss_pred --cCCCccE-EEEEeCCCCCCCEEEEEECCCEEEEEECCCCcc----eEEEEccCCCCceEEEEECCCC----CCcEEEE
Confidence 7899999 999998322478999999999999999986522 4667788999999999999982 1279999
Q ss_pred EcCCC-EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCC-----------------CCEEEEEeCCCcEEEEEccccccC
Q 008363 253 AGHGG-LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPD-----------------PGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~-----------------~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
++.|+ |++||++.... ....+.+|...|.+++|+|+ +.+|++++.|++|++||++.
T Consensus 123 gs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~---- 198 (316)
T 3bg1_A 123 GSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE---- 198 (316)
T ss_dssp ECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT----
T ss_pred EcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC----
Confidence 99999 99999987532 23556789999999999998 47899999999999999943
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCC----CEEEEEeCCCeEEEEEcCCCee---eccCCCCCcceeeeec
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAYCSADGTVHRFQLTAKAV---EKDHSRNRPMHFLCGS 385 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s~s~Dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~s 385 (568)
+... .++..+.+|...|++++|+|++ .+|++++.||+|+||++.+... ...........+.+.+
T Consensus 199 ----~~~~-----~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~ 269 (316)
T 3bg1_A 199 ----DGQW-----KEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVS 269 (316)
T ss_dssp ----TSCE-----EEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEE
T ss_pred ----CCcc-----ceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEE
Confidence 1110 2345778999999999999986 8999999999999999976211 0000000123455668
Q ss_pred ccCCCCceEEcccCCCCCcc
Q 008363 386 VTEDESAITVNTPLDNTPVP 405 (568)
Q Consensus 386 ~~~~~~~i~~~~~~~~~~~~ 405 (568)
+++++..|+++.....+.+.
T Consensus 270 ~sp~g~~las~~~D~~v~lw 289 (316)
T 3bg1_A 270 WSITANILAVSGGDNKVTLW 289 (316)
T ss_dssp ECTTTCCEEEEESSSCEEEE
T ss_pred EcCCCCEEEEEcCCCeEEEE
Confidence 88999888887766666443
No 23
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=2.1e-29 Score=260.55 Aligned_cols=276 Identities=17% Similarity=0.162 Sum_probs=208.0
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC--------------------
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS-------------------- 152 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~-------------------- 152 (568)
...++|.+ .|++++|+|++ .+||+|+ ++.++||++.+++.+..+..+.
T Consensus 58 ~~~~~h~~-~V~~v~fspdg----------~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 125 (393)
T 1erj_A 58 HKSLDHTS-VVCCVKFSNDG----------EYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125 (393)
T ss_dssp EEEEECSS-CCCEEEECTTS----------SEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCB
T ss_pred EEecCCCC-EEEEEEECCCC----------CEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCcee
Confidence 34457988 55599999999 7999876 7899999999887766554321
Q ss_pred ---------C---ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC
Q 008363 153 ---------M---KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID 218 (568)
Q Consensus 153 ---------~---~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~ 218 (568)
. +.++.++.+++|+... +...+.+|...| ++++|+ |++.+|++|+.||+|++||+.++
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v-~~~~~~--p~~~~l~s~s~d~~v~iwd~~~~----- 197 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-YSLDYF--PSGDKLVSGSGDRTVRIWDLRTG----- 197 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT-----
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCE-EEEEEc--CCCCEEEEecCCCcEEEEECCCC-----
Confidence 0 4567889999999865 455678999999 999999 88999999999999999999876
Q ss_pred CceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-------CCCCCCeEEEEEcCCC
Q 008363 219 SRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-------HPAPKFIYGLDWLPDP 289 (568)
Q Consensus 219 ~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-------~~h~~~i~~l~~sp~~ 289 (568)
.+...+. |...+.+++|+| ++ .+|++|+.|+ |++||++++ ..+..+ .+|...|++++|+|++
T Consensus 198 -~~~~~~~-~~~~v~~~~~~~~~~------~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~~~~g 268 (393)
T 1erj_A 198 -QCSLTLS-IEDGVTTVAVSPGDG------KYIAAGSLDRAVRVWDSETG-FLVERLDSENESGTGHKDSVYSVVFTRDG 268 (393)
T ss_dssp -EEEEEEE-CSSCEEEEEECSTTC------CEEEEEETTSCEEEEETTTC-CEEEEEC------CCCSSCEEEEEECTTS
T ss_pred -eeEEEEE-cCCCcEEEEEECCCC------CEEEEEcCCCcEEEEECCCC-cEEEeecccccCCCCCCCCEEEEEECCCC
Confidence 6666664 567799999999 66 8999999999 999999987 444444 5789999999999999
Q ss_pred CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 290 GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 290 ~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
++|++++.|++|++||++.......... .....+...+.+|...|.+++|+|++.+|++++.||.|++||+.++..
T Consensus 269 ~~l~s~s~d~~v~~wd~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~ 344 (393)
T 1erj_A 269 QSVVSGSLDRSVKLWNLQNANNKSDSKT----PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP 344 (393)
T ss_dssp SEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEeCCCEEEEEECCCCCCcccccC----CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 9999999999999999975321100000 000134567889999999999999999999999999999999988765
Q ss_pred eccCCCCCcceeeeecc------cCCCCceEEcccCCCC
Q 008363 370 EKDHSRNRPMHFLCGSV------TEDESAITVNTPLDNT 402 (568)
Q Consensus 370 ~~~~~~~~~~~~~~~s~------~~~~~~i~~~~~~~~~ 402 (568)
......+... ..+..+ .+++..++.++....+
T Consensus 345 ~~~l~~h~~~-v~~v~~~~~~~~~p~~~~l~sgs~Dg~i 382 (393)
T 1erj_A 345 LLMLQGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKA 382 (393)
T ss_dssp EEEEECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEE
T ss_pred EEEECCCCCC-EEEEEecCCcCcCCCCCEEEEECCCCcE
Confidence 5443333322 222222 2345556555544433
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.97 E-value=3.9e-29 Score=250.92 Aligned_cols=246 Identities=16% Similarity=0.222 Sum_probs=200.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+..+.+|.. .|.+++|+|++ .+|++|+.|++|+|||+.+++++..+
T Consensus 58 ~~~~~~h~~-~v~~~~~s~dg----------~~l~s~s~D~~v~~wd~~~~~~~~~~----------------------- 103 (319)
T 3frx_A 58 VRSFKGHSH-IVQDCTLTADG----------AYALSASWDKTLRLWDVATGETYQRF----------------------- 103 (319)
T ss_dssp EEEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEEE-----------------------
T ss_pred ceEEeCCcc-cEEEEEECCCC----------CEEEEEeCCCEEEEEECCCCCeeEEE-----------------------
Confidence 445678998 55599999999 89999999999999999999888776
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| .+++|+ +++.+|++|+.||+|++||+.. .++..+.+|...|.++.|.|.........+|+
T Consensus 104 ---~~h~~~v-~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 104 ---VGHKSDV-MSVDID--KKASMIISGSRDKTIKVWTIKG-------QCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp ---ECCSSCE-EEEEEC--TTSCEEEEEETTSCEEEEETTS-------CEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred ---ccCCCcE-EEEEEc--CCCCEEEEEeCCCeEEEEECCC-------CeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 7889999 999999 8899999999999999999863 56778889999999999999641111235899
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+++.|+ |++||+++. .....+.+|...|++++|+|++++|++++.||+|+|||++. + +++..
T Consensus 171 s~~~d~~i~~wd~~~~-~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~--------~--------~~~~~ 233 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQF-QIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA--------K--------KAMYT 233 (319)
T ss_dssp EEETTSCEEEEETTTT-EEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTT--------T--------EEEEE
T ss_pred EEeCCCEEEEEECCcc-hhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------C--------cEEEE
Confidence 999999 999999976 77788889999999999999999999999999999999953 3 23456
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC-------CcceeeeecccCCCCceEEcccCCCCC
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN-------RPMHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
+.. ...|.+++|+|++.+|++++.+ .+++|++............ ..+...+.++++++..|+.+.....+.
T Consensus 234 ~~~-~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~ 311 (319)
T 3frx_A 234 LSA-QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIR 311 (319)
T ss_dssp EEC-CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ecC-CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEE
Confidence 654 4689999999999999988755 5999999876544332111 123456778999999998887665553
No 25
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=257.37 Aligned_cols=243 Identities=18% Similarity=0.277 Sum_probs=194.4
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCC--------------ccCCC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~--------------~~~~~ 158 (568)
..+|.+ .|.+++|+|++ .+||+|+.|++|+||++..+ .++..+.+|.. ++++.
T Consensus 57 ~~~h~~-~v~~~~~sp~g----------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~ 125 (345)
T 3fm0_A 57 SEGHQR-TVRKVAWSPCG----------NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR 125 (345)
T ss_dssp CSSCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccccCC-cEEEEEECCCC----------CEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC
Confidence 357888 55599999999 89999999999999999875 45666766654 56788
Q ss_pred CceEEEeecce-----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee
Q 008363 159 PRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR 233 (568)
Q Consensus 159 ~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 233 (568)
++.+++|+... +...+.+|...| .+++|+ |++.+|++|+.||+|++||+.... ..+...+.+|...|.
T Consensus 126 D~~v~iwd~~~~~~~~~~~~~~~h~~~v-~~~~~~--p~~~~l~s~s~d~~i~~w~~~~~~----~~~~~~~~~h~~~v~ 198 (345)
T 3fm0_A 126 DKSVWVWEVDEEDEYECVSVLNSHTQDV-KHVVWH--PSQELLASASYDDTVKLYREEEDD----WVCCATLEGHESTVW 198 (345)
T ss_dssp TSCEEEEEECTTSCEEEEEEECCCCSCE-EEEEEC--SSSSCEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEE
T ss_pred CCeEEEEECCCCCCeEEEEEecCcCCCe-EEEEEC--CCCCEEEEEeCCCcEEEEEecCCC----EEEEEEecCCCCceE
Confidence 99999998753 455677899999 999999 889999999999999999998651 245678899999999
Q ss_pred EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--------------cceeeeCC-CCCCeEEEEEcCCCCEEEEEeC
Q 008363 234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--------------RPLWDIHP-APKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--------------~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
+|+|+|++ .+|++++.|+ |++||+.... .++..+.+ |...|++++|+|++..|++++.
T Consensus 199 ~l~~sp~g------~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~ 272 (345)
T 3fm0_A 199 SLAFDPSG------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACG 272 (345)
T ss_dssp EEEECTTS------SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEET
T ss_pred EEEECCCC------CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeC
Confidence 99999999 8999999999 9999975332 12333444 8889999999999999999999
Q ss_pred CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCe
Q 008363 298 DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 298 dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
|+.|++|+....... ..+. .....+.+.+|...|++++|+|++ .+|++|+.||+|++|++.+.+
T Consensus 273 d~~i~vw~~~~~~~~----~~~~---~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 273 DDAIRVFQEDPNSDP----QQPT---FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSCEEEEEECTTSCT----TSCC---EEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred CCeEEEEEeCCCCCc----ceee---EEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 999999998542210 0110 000112345899999999999997 599999999999999997654
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=1.1e-29 Score=259.32 Aligned_cols=205 Identities=14% Similarity=0.157 Sum_probs=175.4
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.+ .|++++|+|++ .+|++|+.||.|+|||+.+++++..+
T Consensus 135 ~~~h~~-~V~~v~~spdg----------~~l~sgs~dg~v~iwd~~~~~~~~~~-------------------------- 177 (357)
T 4g56_B 135 KYEHDD-IVKTLSVFSDG----------TQAVSGGKDFSVKVWDLSQKAVLKSY-------------------------- 177 (357)
T ss_dssp ECCCSS-CEEEEEECSSS----------SEEEEEETTSCEEEEETTTTEEEEEE--------------------------
T ss_pred cCCCCC-CEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCcEEEEE--------------------------
Confidence 457888 55699999999 89999999999999999998888776
Q ss_pred cCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+|...| ++++|+ +++ .+|++++.||+|+|||++++.. .....+..|...+.+++|+|++ ..+|++|
T Consensus 178 ~~h~~~v-~~v~~s--~~~~~~~~s~~~dg~v~~wd~~~~~~----~~~~~~~~~~~~v~~v~~sp~~-----~~~la~g 245 (357)
T 4g56_B 178 NAHSSEV-NCVAAC--PGKDTIFLSCGEDGRILLWDTRKPKP----ATRIDFCASDTIPTSVTWHPEK-----DDTFACG 245 (357)
T ss_dssp CCCSSCE-EEEEEC--TTCSSCEEEEETTSCEEECCTTSSSC----BCBCCCTTCCSCEEEEEECTTS-----TTEEEEE
T ss_pred cCCCCCE-EEEEEc--cCCCceeeeeccCCceEEEECCCCce----eeeeeeccccccccchhhhhcc-----cceEEEe
Confidence 7889999 999999 555 4899999999999999987622 2222344677889999999986 3799999
Q ss_pred cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC-CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 254 GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP-GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~-~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+.|+ |++||++++ .++..+.+|...|++++|+|++ ++|++++.|++|+|||++. ++++ ..
T Consensus 246 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~--------~~~~---------~~ 307 (357)
T 4g56_B 246 DETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF--------SEVF---------RD 307 (357)
T ss_dssp ESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS--------CEEE---------EE
T ss_pred ecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC--------CcEe---------EE
Confidence 9998 999999987 8888999999999999999987 5788999999999999943 4332 44
Q ss_pred ecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCC
Q 008363 332 NCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 332 ~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
.+|...|++|+|+| ++.+|++++.||+|++|++..
T Consensus 308 ~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~ 343 (357)
T 4g56_B 308 LSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS 343 (357)
T ss_dssp CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence 58999999999998 689999999999999999954
No 27
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=5.1e-30 Score=263.91 Aligned_cols=236 Identities=14% Similarity=0.177 Sum_probs=191.4
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-------eeeEEeccCC----------
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-------TMKAIYLSSM---------- 153 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-------~~~~l~~~~~---------- 153 (568)
.+.....|.. .|.+++|+|++ .+||+|+.|+.|+||++.+.. ....+.+|..
T Consensus 100 ~~~~~~~h~~-~v~~~~~s~~g----------~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~ 168 (380)
T 3iz6_a 100 KTHAIKLHCP-WVMECAFAPNG----------QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD 168 (380)
T ss_dssp EEEEEECCCT-TCCCCEECTTS----------SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS
T ss_pred cceEEecCCC-CEEEEEECCCC----------CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecC
Confidence 4455667888 45599999999 899999999999999986521 2223333322
Q ss_pred -----ccCCCCceEEEeecce--eccc-----ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 154 -----KEGTDPRFVKLEPVFR--CSML-----KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 154 -----~~~~~~~~v~~~~~~~--~~~~-----~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
++++.++.+++|+..+ +... ..+|...| .+++|++. ++.+|++|+.||+|++||++.. ..+
T Consensus 169 ~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~-----~~~ 241 (380)
T 3iz6_a 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV-LSLSINSL-NANMFISGSCDTTVRLWDLRIT-----SRA 241 (380)
T ss_dssp SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCE-EEEEECSS-SCCEEEEEETTSCEEEEETTTT-----CCC
T ss_pred CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCe-EEEEeecC-CCCEEEEEECCCeEEEEECCCC-----Ccc
Confidence 5678899999999876 2222 26899999 99999732 6789999999999999999743 267
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC-------CCeEEEEEcCCCCEEE
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP-------KFIYGLDWLPDPGCVI 293 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~-------~~i~~l~~sp~~~~l~ 293 (568)
+..+.+|...|.+++|+|++ .+|++|+.|+ |++||++++ .++..+..+. ..|++++|+|+|++|+
T Consensus 242 ~~~~~~h~~~v~~v~~~p~~------~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 314 (380)
T 3iz6_a 242 VRTYHGHEGDINSVKFFPDG------QRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRNDNELPIVTSVAFSISGRLLF 314 (380)
T ss_dssp CEEECCCSSCCCEEEECTTS------SEEEEECSSSCEEEEETTTT-EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEE
T ss_pred eEEECCcCCCeEEEEEecCC------CeEEEEcCCCeEEEEECCCC-cEEEEecccccccccccCceEEEEECCCCCEEE
Confidence 78899999999999999999 8999999999 999999987 6666554432 3489999999999999
Q ss_pred EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE----ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 294 LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV----NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 294 s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~----~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+|+.||.|++||+.. ++.+ ..+ .+|...|++++|+|++.+|++|+.||+|+||++...
T Consensus 315 ~g~~dg~i~vwd~~~--------~~~~--------~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 315 AGYSNGDCYVWDTLL--------AEMV--------LNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECTTSCEEEEETTT--------CCEE--------EEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EEECCCCEEEEECCC--------CceE--------EEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 999999999999843 3332 333 579999999999999999999999999999999643
No 28
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.2e-29 Score=258.39 Aligned_cols=237 Identities=18% Similarity=0.304 Sum_probs=198.4
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDP 159 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~ 159 (568)
+....+|.. .|.+|+|+|++ .+||+|+.||+|+|||+.+++++..+.+|.. +.++.+
T Consensus 140 ~~~~~~~~~-~V~sv~fspdg----------~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d 208 (420)
T 4gga_A 140 LLQMEQPGE-YISSVAWIKEG----------NYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS 208 (420)
T ss_dssp EEECCSTTC-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred EEEecCCCC-cEEEEEECCCC----------CEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCC
Confidence 333446666 56699999999 8999999999999999999999998887765 567788
Q ss_pred ceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 160 RFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 160 ~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
..+.+|+... ....+.+|...+ ..+.|+ +++.+|++++.||.|++|++..+.. ....+..+..|...|.+++
T Consensus 209 ~~i~~~d~~~~~~~~~~~~~h~~~~-~~~~~~--~~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~ 283 (420)
T 4gga_A 209 GHIHHHDVRVAEHHVATLSGHSQEV-CGLRWA--PDGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVA 283 (420)
T ss_dssp SEEEEEETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEE
T ss_pred CceeEeeecccceeeEEecccccce-eeeeec--CCCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeee
Confidence 8889988765 344567899999 999999 8899999999999999999986532 2245677889999999999
Q ss_pred EccCCCCCCCCcEEEEE--cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEcccccc
Q 008363 237 WAPAESDSDSANVILTA--GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAY 311 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~--s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~ 311 (568)
|+|.+ ..+++++ +.|+ |+|||++++ .++..+..| ..+.++.|+|++..|++++ .|+.|+|||+++
T Consensus 284 ~~p~~-----~~~la~~~gs~D~~I~iwd~~t~-~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~--- 353 (420)
T 4gga_A 284 WCPWQ-----SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--- 353 (420)
T ss_dssp ECTTC-----TTEEEEEECTTTCEEEEEETTTT-EEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT---
T ss_pred eCCCc-----ccEEEEEeecCCCEEEEEeCCcc-ccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECCC---
Confidence 99987 3777764 4688 999999987 667666544 5689999999999999875 699999999953
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
++ ++..+.+|.+.|++|+|+|+|.+|+||+.|++|+|||+...
T Consensus 354 -----~~--------~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 354 -----MA--------KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp -----CC--------EEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred -----Cc--------EEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 53 35789999999999999999999999999999999999654
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.97 E-value=6.2e-29 Score=250.28 Aligned_cols=241 Identities=14% Similarity=0.166 Sum_probs=185.3
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----eeeEEeccCC---------------
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----TMKAIYLSSM--------------- 153 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----~~~~l~~~~~--------------- 153 (568)
.+.+|.+ .|++|+|+|+++ .+||||+.||+|+|||+.+.+ +...+.+|..
T Consensus 33 tL~GH~~-~V~~v~~sp~~~---------~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 33 TLKGHNG-WVTQIATTPQFP---------DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp EECCCSS-CEEEEEECTTCT---------TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred EECCccC-CEEEEEEeCCCC---------CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEE
Confidence 3578999 566999999854 799999999999999987643 3344444433
Q ss_pred -----------------------------------------ccCCCCceEEEeecce---ecccccCCcCccceEEEEcc
Q 008363 154 -----------------------------------------KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWST 189 (568)
Q Consensus 154 -----------------------------------------~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~ 189 (568)
+.++.++.+++|+... ......+|...+ .+++|++
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v-~~~~~~~ 181 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV-SCVRFSP 181 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE-EEEEECS
T ss_pred EEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc-cceEEcc
Confidence 2344566666666543 223456788888 9999997
Q ss_pred CCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc
Q 008363 190 SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR 268 (568)
Q Consensus 190 ~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~ 268 (568)
.+...++++++.|++|++||+... .++..+.+|.+.|++|+|+|++ .+|++|+.|+ |++||+++. .
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~------~~~~~~~~h~~~v~~~~~s~~~------~~l~s~s~Dg~i~iwd~~~~-~ 248 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANC------KLKTNHIGHTGYLNTVTVSPDG------SLCASGGKDGQAMLWDLNEG-K 248 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEECTTS------SEEEEEETTCEEEEEETTTT-E
T ss_pred CCCCcEEEEEcCCCEEEEEECCCC------ceeeEecCCCCcEEEEEECCCC------CEEEEEeCCCeEEEEEeccC-c
Confidence 666678999999999999999976 8888999999999999999999 8999999999 999999987 7
Q ss_pred ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc-ccceEEEecCCCCEEEEEEecCC
Q 008363 269 PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK-QQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 269 ~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~-~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
++..+.. ...|.+++|+|++. +++++.|+.|++||++. +..+.... ........+|...|++++|+|++
T Consensus 249 ~~~~~~~-~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~--------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 249 HLYTLDG-GDIINALCFSPNRY-WLCAATGPSIKIWDLEG--------KIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EEEEEEC-SSCEEEEEECSSSS-EEEEEETTEEEEEETTT--------TEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred eeeeecC-CceEEeeecCCCCc-eeeccCCCEEEEEECCC--------CeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 7776654 46799999999876 55666799999999954 21110000 01122445789999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCe
Q 008363 348 GMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
++|++|+.||.|+|||+.+|.
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEeCCCEEEEEeCCCcC
Confidence 999999999999999998764
No 30
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-28 Score=252.10 Aligned_cols=251 Identities=15% Similarity=0.188 Sum_probs=202.1
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.+.+|.+ .|.+++|+|++ .+||+|+.||.|+||++.. +..+..+
T Consensus 6 ~~~~h~~-~v~~~~~s~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~----------------------- 51 (379)
T 3jrp_A 6 IANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGETHKLIDTL----------------------- 51 (379)
T ss_dssp CEEECCC-CEEEEEECSSS----------SEEEEEETTSCEEEEEEETTEEEEEEEE-----------------------
T ss_pred EecCCcc-cEEEEEEcCCC----------CEEEEEECCCcEEEEecCCCcceeeeEe-----------------------
Confidence 3568998 55599999999 7999999999999999984 4444444
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV 249 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~ 249 (568)
.+|...| ++++|++..++.+|++|+.||.|++||+.++. ...+..+..|...|.+++|+|+ + .+
T Consensus 52 ---~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~------~~ 117 (379)
T 3jrp_A 52 ---TGHEGPV-WRVDWAHPKFGTILASCSYDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYG------PL 117 (379)
T ss_dssp ---CCCSSCE-EEEEECCGGGCSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred ---cCCCCcE-EEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc----eeEeeeecCCCcceEEEEeCCCCCC------CE
Confidence 7899999 99999833338999999999999999999761 1377788899999999999999 7 89
Q ss_pred EEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 250 ILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLP-------------DPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp-------------~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
|++++.|+ |++||++... .....+..|...|++++|+| ++.+|++++.||.|++||++.
T Consensus 118 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~------ 191 (379)
T 3jrp_A 118 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------ 191 (379)
T ss_dssp EEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET------
T ss_pred EEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC------
Confidence 99999999 9999999763 23456678999999999999 699999999999999999964
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecC---CCEEEEEeCCCeEEEEEcCCCe----eeccCCCCCcceeeeeccc
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---TGMVAYCSADGTVHRFQLTAKA----VEKDHSRNRPMHFLCGSVT 387 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~v~iwd~~~~~----~~~~~~~~~~~~~~~~s~~ 387 (568)
+... ...+..+.+|...|++++|+|+ +.+|++++.||.|++||+.++. ............+.+.+++
T Consensus 192 --~~~~----~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 192 --DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp --TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC
T ss_pred --CCcc----eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEc
Confidence 2211 1345678899999999999999 8999999999999999998763 1111111122345566889
Q ss_pred CCCCceEEcccCCCCCc
Q 008363 388 EDESAITVNTPLDNTPV 404 (568)
Q Consensus 388 ~~~~~i~~~~~~~~~~~ 404 (568)
+++..++++.....+.+
T Consensus 266 ~~g~~l~~~~~dg~i~i 282 (379)
T 3jrp_A 266 LSGNVLALSGGDNKVTL 282 (379)
T ss_dssp SSSCCEEEEESSSSEEE
T ss_pred CCCCEEEEecCCCcEEE
Confidence 99999888776655533
No 31
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=99.97 E-value=1.2e-28 Score=269.80 Aligned_cols=273 Identities=12% Similarity=0.114 Sum_probs=211.9
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPR 160 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~ 160 (568)
+.+|.+ .|++++|+|+++ .+|++|+.|++|+|||..++++...+.+|.. ++++.|+
T Consensus 143 l~gh~~-~v~~v~f~p~~~---------~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~ 212 (611)
T 1nr0_A 143 LTGQAR-AMNSVDFKPSRP---------FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212 (611)
T ss_dssp CCCCSS-CEEEEEECSSSS---------CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ecCCCC-CceEEEECCCCC---------eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCC
Confidence 457888 566999999984 4799999999999999999888888877765 5678899
Q ss_pred eEEEeecce--ecccc-c------CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC--------------
Q 008363 161 FVKLEPVFR--CSMLK-C------GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-------------- 217 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~-~------~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-------------- 217 (568)
.+++|+... +...+ . +|...| ++++|+ |+|.+|++|+.|++|+|||+.++....
T Consensus 213 ~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V-~~v~~s--pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~ 289 (611)
T 1nr0_A 213 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSV-FGLTWS--PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG 289 (611)
T ss_dssp CEEEEETTTCCEEEECBCTTSSSCSSSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred cEEEEECCCCcEeeeeccccccccccCCCE-EEEEEC--CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence 999999754 33233 2 799999 999999 889999999999999999998652100
Q ss_pred -----------------------CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee
Q 008363 218 -----------------------DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI 273 (568)
Q Consensus 218 -----------------------~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~ 273 (568)
...+...+.+|...|.+++|+|++ .+|++++.|+ |++||+.++. ....+
T Consensus 290 ~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg------~~l~s~s~D~~v~~Wd~~~~~-~~~~~ 362 (611)
T 1nr0_A 290 IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG------KTLFSADAEGHINSWDISTGI-SNRVF 362 (611)
T ss_dssp EEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTCC-EEECS
T ss_pred EEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC------CEEEEEeCCCcEEEEECCCCc-eeeec
Confidence 012334567899999999999999 8999999999 9999987652 11110
Q ss_pred -C------------------------------------------------------------------------------
Q 008363 274 -H------------------------------------------------------------------------------ 274 (568)
Q Consensus 274 -~------------------------------------------------------------------------------ 274 (568)
.
T Consensus 363 ~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~ 442 (611)
T 1nr0_A 363 PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 442 (611)
T ss_dssp SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEE
T ss_pred ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCce
Confidence 0
Q ss_pred ---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363 275 ---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351 (568)
Q Consensus 275 ---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~ 351 (568)
.|...+.+++|+|+|++|++|+.|++|+|||+.. +.. ..+.. .+|...|++++|+|++++|+
T Consensus 443 ~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~--------~~~------~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 443 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG--------ASV------SEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEET--------TEE------EEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred eeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccC--------Cce------eeeec-cCCCCceEEEEECCCCCEEE
Confidence 1234578899999999999999999999999943 211 12234 67999999999999999999
Q ss_pred EEeCCCeEEEEEcCC-Ceeecc-CCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 352 YCSADGTVHRFQLTA-KAVEKD-HSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 352 s~s~Dg~v~iwd~~~-~~~~~~-~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
+++.|++|++|++.+ +..... ........+.+.++++++..|+.++....+
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v 560 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcE
Confidence 999999999999987 444332 111123456778899999999888766555
No 32
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.4e-29 Score=251.15 Aligned_cols=232 Identities=15% Similarity=0.212 Sum_probs=181.2
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-------CceeeEEeccCC--------------ccC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-------LRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-------~~~~~~l~~~~~--------------~~~ 156 (568)
|.+ .|++++|+|++ .+||+|+.|++|+||++.. .+++..+.+|.. +++
T Consensus 57 h~~-~v~~v~~sp~~----------~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~ 125 (330)
T 2hes_X 57 HKK-AIRSVAWRPHT----------SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATC 125 (330)
T ss_dssp CCS-CEEEEEECTTS----------SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEE
T ss_pred ccC-CEEEEEECCCC----------CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 888 56699999999 7999999999999999853 345555655544 567
Q ss_pred CCCceEEEeecc------eecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 157 TDPRFVKLEPVF------RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 157 ~~~~~v~~~~~~------~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
+.++.+++|+.. .+...+.+|...| .+++|+ |++.+|++|+.||+|++||+... ...++..+.+|..
T Consensus 126 s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v-~~v~~~--p~~~~l~s~s~D~~i~iW~~~~~----~~~~~~~~~~h~~ 198 (330)
T 2hes_X 126 SRDKSVWIWETDESGEEYECISVLQEHSQDV-KHVIWH--PSEALLASSSYDDTVRIWKDYDD----DWECVAVLNGHEG 198 (330)
T ss_dssp ETTSCEEEEECCTTCCCCEEEEEECCCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEEEETT----EEEEEEEECCCSS
T ss_pred eCCCEEEEEeccCCCCCeEEEEEeccCCCce-EEEEEC--CCCCEEEEEcCCCeEEEEECCCC----CeeEEEEccCCCC
Confidence 889999999883 2455678999999 999999 78999999999999999998754 1257788999999
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-------cceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcE
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF-------RPLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAM 301 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-------~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I 301 (568)
.|.+++|+|++ ...+|++++.|+ |++||++... .+...+.. |...|++++|++++ +|++++.||.|
T Consensus 199 ~v~~~~~~~~~----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v 273 (330)
T 2hes_X 199 TVWSSDFDKTE----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVL 273 (330)
T ss_dssp CEEEEEECCSS----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCE
T ss_pred cEEEEEecCCC----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEE
Confidence 99999999983 126899999999 9999997542 22344444 89999999999765 79999999999
Q ss_pred EEEEccccccCCCCCCCCccCccccceE-EEecCCC-CEEEEEEec--CCCEEEEEeCCCeEEEEEcCC
Q 008363 302 RIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSF-AIWSVQVSR--LTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 302 ~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~-~V~~l~~sp--~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+|||... ++. ..+. .+.+|.. .|++++|+| ++.+|++++.||+|+||++..
T Consensus 274 ~iw~~~~--------~~~------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 274 AVYEEVD--------GEW------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEET--------TEE------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEcCC--------Cce------EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9999843 211 1112 3357887 899999999 689999999999999999853
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.1e-28 Score=255.13 Aligned_cols=222 Identities=15% Similarity=0.235 Sum_probs=187.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCCCceEEEeec
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTDPRFVKLEPV 167 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~~~~v~~~~~ 167 (568)
.|.+++|+|++ .+||+|+.||.|+|||+.+++.+..+.+|.. ++++.++.+++|+.
T Consensus 125 ~v~~v~~s~dg----------~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~ 194 (393)
T 1erj_A 125 YIRSVCFSPDG----------KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 194 (393)
T ss_dssp BEEEEEECTTS----------SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEEECCCC----------CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEEC
Confidence 46799999999 8999999999999999999988888877765 56778999999998
Q ss_pred ce--ecccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-------eCCCCCeeEEEE
Q 008363 168 FR--CSMLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-------SADTLPIRAVSW 237 (568)
Q Consensus 168 ~~--~~~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~h~~~V~~v~~ 237 (568)
.+ +... ..+...+ .+++|+ | ++.+|++|+.||+|++||+.++ ..+..+ .+|...|.+++|
T Consensus 195 ~~~~~~~~-~~~~~~v-~~~~~~--~~~~~~l~~~s~d~~v~iwd~~~~------~~~~~~~~~~~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 195 RTGQCSLT-LSIEDGV-TTVAVS--PGDGKYIAAGSLDRAVRVWDSETG------FLVERLDSENESGTGHKDSVYSVVF 264 (393)
T ss_dssp TTTEEEEE-EECSSCE-EEEEEC--STTCCEEEEEETTSCEEEEETTTC------CEEEEEC------CCCSSCEEEEEE
T ss_pred CCCeeEEE-EEcCCCc-EEEEEE--CCCCCEEEEEcCCCcEEEEECCCC------cEEEeecccccCCCCCCCCEEEEEE
Confidence 65 2222 2355667 899999 5 7889999999999999999876 455444 579999999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCC-----------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPF-----------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~-----------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd 305 (568)
+|++ .+|++++.|+ |++||++... .+...+.+|...|.+++|+|++.+|++++.|+.|++||
T Consensus 265 ~~~g------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd 338 (393)
T 1erj_A 265 TRDG------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD 338 (393)
T ss_dssp CTTS------SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEE
T ss_pred CCCC------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 9999 8999999999 9999998642 23456778999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEec------CCCEEEEEeCCCeEEEEEcC
Q 008363 306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR------LTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp------~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++. |++ +..+.+|...|.+++|++ ++.+|++|+.||+|+||++.
T Consensus 339 ~~~--------~~~--------~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 339 KKS--------GNP--------LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TTT--------CCE--------EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCC--------CeE--------EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 943 533 468899999999999986 57899999999999999984
No 34
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.97 E-value=3.2e-28 Score=246.80 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=188.0
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCCC
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGTD 158 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~~ 158 (568)
..+.+|.. .|.+++|+|++ .+|++|+.|++|+|||+.+++++..+.+|.. +.++.
T Consensus 70 ~~l~~h~~-~V~~~~~~~~~----------~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~ 138 (343)
T 2xzm_R 70 KALTGHNH-FVSDLALSQEN----------CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA 138 (343)
T ss_dssp EEECCCSS-CEEEEEECSST----------TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET
T ss_pred chhccCCC-ceEEEEECCCC----------CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC
Confidence 34568988 55599999999 7999999999999999999999888887765 56778
Q ss_pred CceEEEeecce-ec---ccccCCcCccceEEEEccCCCC----------CEEEEEeCCCeEEEEEccCCCCCCCCceeEE
Q 008363 159 PRFVKLEPVFR-CS---MLKCGGTQSIPLTMEWSTSPPH----------DYLLAGCHDGTVALWKFVASDSSIDSRPLLC 224 (568)
Q Consensus 159 ~~~v~~~~~~~-~~---~~~~~h~~~V~~~v~~s~~~~g----------~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~ 224 (568)
++.+++|+... +. ....+|...| .+++|+ |++ .+|++|+.||+|++||.. . .....
T Consensus 139 d~~i~~wd~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~------~~~~~ 208 (343)
T 2xzm_R 139 EREIKLWNILGECKFSSAEKENHSDWV-SCVRYS--PIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F------QIRYT 208 (343)
T ss_dssp TSCEEEEESSSCEEEECCTTTSCSSCE-EEEEEC--CCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T------EEEEE
T ss_pred CCEEEEEeccCCceeeeecccCCCcee-eeeeec--cccccccccCCCCCEEEEEcCCCEEEEEcCC-C------ceeEE
Confidence 89999999753 11 1233788999 999999 544 699999999999999943 2 56778
Q ss_pred eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE
Q 008363 225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI 303 (568)
Q Consensus 225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l 303 (568)
+.+|...|.+++|+|++ .+|++|+.|+ |++||++....+...+ .+...|++++|+|++.+|++ +.|+.|++
T Consensus 209 ~~~h~~~v~~~~~s~~g------~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~-~~d~~v~i 280 (343)
T 2xzm_R 209 FKAHESNVNHLSISPNG------KYIATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAV-GTDQGVKI 280 (343)
T ss_dssp EECCSSCEEEEEECTTS------SEEEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEE-EESSCEEE
T ss_pred EcCccccceEEEECCCC------CEEEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEE-ECCCCEEE
Confidence 89999999999999999 8999999999 9999996554444444 34556999999999987765 45788999
Q ss_pred EEccccccCCCCCCCCcc-----CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 304 VSLLKAAYDVPATGKPFA-----GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~-----~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
||+.. ++... ...........+|...|++++|+|++.+|++|+.||.|++|++.++
T Consensus 281 w~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 281 FNLMT--------QSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EESSS--------CCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEeCC--------CCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99954 22210 0000001112378889999999999999999999999999998653
No 35
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.97 E-value=1.6e-28 Score=243.84 Aligned_cols=219 Identities=18% Similarity=0.318 Sum_probs=173.6
Q ss_pred EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363 92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
+..+.+|.+ .|++++|+|+ + .+||+|+.||+|+|||+.++. .+..+
T Consensus 46 ~~~l~gH~~-~V~~v~~s~~~~g----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~------------------- 95 (297)
T 2pm7_B 46 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVMIWKEENGRWSQIAVH------------------- 95 (297)
T ss_dssp CEEECCCSS-CEEEEEECCGGGC----------SEEEEEETTTEEEEEEBSSSCBCCCEEE-------------------
T ss_pred EEEEccccC-CeEEEEecCCCcC----------CEEEEEcCCCEEEEEEcCCCceEEEEEe-------------------
Confidence 345678998 5669999864 5 799999999999999998764 23232
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD---- 243 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~---- 243 (568)
.+|...| .+++|+|...+.+|++|+.||+|++||+..... .....+.+|...|.+++|+|++..
T Consensus 96 -------~~h~~~v-~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 96 -------AVHSASV-NSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp -------CCCSSCE-EEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC----BCCEEEECCSSCEEEEEECCCC------
T ss_pred -------ecCCCce-eEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc----eeeeeeecccCccceEeecCCccccccc
Confidence 6788899 999999443388999999999999999986521 224567899999999999997300
Q ss_pred ---CCCCcEEEEEcCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCC---CEEEEEeCCCcEEEEEccccccCC
Q 008363 244 ---SDSANVILTAGHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDP---GCVILSFDDGAMRIVSLLKAAYDV 313 (568)
Q Consensus 244 ---~~~~~~las~s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~---~~l~s~~~dg~I~lwd~~~~~~~~ 313 (568)
.....+||+|+.|+ |++||+++... ....+.+|...|++++|+|++ .+|++++.|++|+|||++...
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~--- 240 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ--- 240 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT---
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC---
Confidence 00126999999999 99999987632 456788999999999999985 899999999999999995411
Q ss_pred CCCCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 314 PATGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 314 ~~~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+.. ....+ ..|...|++++|+|++.+|++++.||.|+||+..
T Consensus 241 ---~~~-------~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 241 ---GPW-------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ---SCC-------EEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred ---Ccc-------ceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 111 01122 4678899999999999999999999999999985
No 36
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.4e-28 Score=245.62 Aligned_cols=234 Identities=17% Similarity=0.256 Sum_probs=181.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..+|.+ .|.+++|+|++ .+||+|+.||.|+|||+.++.....+ ...+
T Consensus 7 ~~gH~~-~v~~~~~~~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~----------------------~~~~ 53 (351)
T 3f3f_A 7 DSGHDD-LVHDVVYDFYG----------RHVATCSSDQHIKVFKLDKDTSNWEL----------------------SDSW 53 (351)
T ss_dssp ECCCSS-CEEEEEECSSS----------SEEEEEETTSEEEEEEECSSSCCEEE----------------------EEEE
T ss_pred Cccccc-ceeEEEEcCCC----------CEEEEeeCCCeEEEEECCCCCCccee----------------------ccee
Confidence 358988 55599999999 79999999999999999875322111 1112
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC---CCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI---DSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV 249 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~ 249 (568)
.+|...| ++++|+|..++.+|++|+.||+|++||+..+.... ...++..+.+|...|.+++|+|+ + .+
T Consensus 54 ~~~~~~v-~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------~~ 126 (351)
T 3f3f_A 54 RAHDSSI-VAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLG------LK 126 (351)
T ss_dssp ECCSSCE-EEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred ccCCCcE-EEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCC------cE
Confidence 6899999 99999933258899999999999999998653211 11457788899999999999999 7 89
Q ss_pred EEEEcCCC-EEEEECCCCCc-----------------------------------------------------------c
Q 008363 250 ILTAGHGG-LKFWDIRDPFR-----------------------------------------------------------P 269 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~-----------------------------------------------------------~ 269 (568)
|++++.|+ |++||+++... .
T Consensus 127 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 127 LACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee
Confidence 99999999 99999876420 1
Q ss_pred eeeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEccccccCCCCCC----------------------------
Q 008363 270 LWDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKAAYDVPATG---------------------------- 317 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~~~~~~~~g---------------------------- 317 (568)
+..+.+|...|++++|+|++ .+|++++.||.|++||++..........
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEE 286 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccce
Confidence 34456799999999999998 8999999999999999975311000000
Q ss_pred --CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 318 --KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 318 --~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
..........+..+.+|...|++++|+|++.+|++++.||.|++|++.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 287 KAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred eeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 000001124566788999999999999999999999999999999997653
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=99.97 E-value=2.5e-28 Score=243.22 Aligned_cols=233 Identities=15% Similarity=0.153 Sum_probs=194.5
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
+..+..|.. .+.+++|+|++ ++|++|+.|++|+|||+.+++++..+.+|.. ++++
T Consensus 48 ~~~~~~~~~-~v~~~~~~~~~----------~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs 116 (304)
T 2ynn_A 48 VRSIQVTET-PVRAGKFIARK----------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS 116 (304)
T ss_dssp EEEEECCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE
T ss_pred eEEeeccCC-cEEEEEEeCCC----------CEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC
Confidence 444556777 56699999999 8999999999999999999999988887765 5778
Q ss_pred CCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCee
Q 008363 158 DPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIR 233 (568)
Q Consensus 158 ~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~ 233 (568)
.++.+++|+... +...+.+|...| .+++|+|. ++.+|++|+.||+|++||+... .+.. ...+|...|.
T Consensus 117 ~D~~v~lWd~~~~~~~~~~~~~h~~~v-~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~------~~~~~~~~~~~~~v~ 188 (304)
T 2ynn_A 117 DDLTVKLWNWENNWALEQTFEGHEHFV-MCVAFNPK-DPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERGVN 188 (304)
T ss_dssp TTSCEEEEEGGGTTEEEEEECCCCSCE-EEEEECTT-CTTEEEEEETTSEEEEEETTCS------SCSEEEECCCTTCEE
T ss_pred CCCeEEEEECCCCcchhhhhcccCCcE-EEEEECCC-CCCEEEEEeCCCeEEEEECCCC------CccceeccCCcCcEE
Confidence 999999999765 345678999999 99999932 5689999999999999999765 3333 3346778899
Q ss_pred EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363 234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
.+.|+|.. ...+|++++.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||+|++||++.
T Consensus 189 ~~~~~~~~----~~~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~---- 259 (304)
T 2ynn_A 189 YVDYYPLP----DKPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST---- 259 (304)
T ss_dssp EEEECCST----TCCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----
T ss_pred EEEEEEcC----CCCEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCC----
Confidence 99998843 127999999999 999999987 88899999999999999999999999999999999999943
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCCC--EEEEEeCCCeEEEEEcC
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG--MVAYCSADGTVHRFQLT 365 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~--~l~s~s~Dg~v~iwd~~ 365 (568)
+++ +..+..|...+++++|+|++. +|++|+ |..+.+|++.
T Consensus 260 ----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~asg~-~~g~~~~~~~ 301 (304)
T 2ynn_A 260 ----YKV--------EKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLSLG 301 (304)
T ss_dssp ----CCE--------EEEECCSSSSEEEEEECTTCGGGCEEEEE-TTEEEEEECC
T ss_pred ----Cce--------eeeccCCCccEEEEEECCCCCceEEEEec-CCceEEEEec
Confidence 433 468889999999999999874 567766 4557778774
No 38
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=6.8e-29 Score=260.30 Aligned_cols=213 Identities=12% Similarity=0.157 Sum_probs=172.6
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
...|.. .|.+|+|+|..+ .+||+|+.||.|+|||+.+++....+ ..
T Consensus 115 ~~~~~~-~V~~l~~~P~~~---------~~lasGs~dg~i~lWd~~~~~~~~~~------------------------~~ 160 (435)
T 4e54_B 115 AAPFDR-RATSLAWHPTHP---------STVAVGSKGGDIMLWNFGIKDKPTFI------------------------KG 160 (435)
T ss_dssp EEECSS-CEEEEEECSSCT---------TCEEEEETTSCEEEECSSCCSCCEEE------------------------CC
T ss_pred CCCCCC-CEEEEEEeCCCC---------CEEEEEeCCCEEEEEECCCCCceeEE------------------------Ec
Confidence 456777 455999999764 79999999999999999886544332 11
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+|...| ++|+|+|. ++.+|++|+.||+|+|||+... ...... ..+...+.+++|+|++ .+|++
T Consensus 161 ~gH~~~V-~~l~f~p~-~~~~l~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~ 226 (435)
T 4e54_B 161 IGAGGSI-TGLKFNPL-NTNQFYASSMEGTTRLQDFKGN------ILRVFASSDTINIWFCSLDVSASS------RMVVT 226 (435)
T ss_dssp CSSSCCC-CEEEECSS-CTTEEEEECSSSCEEEEETTSC------EEEEEECCSSCSCCCCCEEEETTT------TEEEE
T ss_pred cCCCCCE-EEEEEeCC-CCCEEEEEeCCCEEEEeeccCC------ceeEEeccCCCCccEEEEEECCCC------CEEEE
Confidence 6899999 99999943 5789999999999999999754 222222 2344568899999999 89999
Q ss_pred EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
|+.|+ |++||++. ..+..+.+|...|++++|+|++. +|++++.|++|+|||++... .. ..+..
T Consensus 227 g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~--------~~-----~~~~~ 291 (435)
T 4e54_B 227 GDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR--------GK-----ASFLY 291 (435)
T ss_dssp ECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC--------SS-----SCCSB
T ss_pred EeCCCcEeeeccCc--ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc--------cc-----ceEEE
Confidence 99999 99999975 56777889999999999999986 67788999999999997533 11 12234
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
..+|...|++++|+|++.+|++++.||.|+|||+.++...
T Consensus 292 ~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 292 SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 5679999999999999999999999999999999876543
No 39
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.97 E-value=3.9e-28 Score=263.30 Aligned_cols=226 Identities=20% Similarity=0.331 Sum_probs=195.6
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
.+....+|.. .+++++|+|++ .+|++++.||.|++|+.. ++.+..+..|.. +.+
T Consensus 336 ~~~~~~~~~~-~v~~~~~s~~g----------~~l~~~~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 403 (577)
T 2ymu_A 336 HLQTLTGHSS-SVWGVAFSPDG----------QTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASA 403 (577)
T ss_dssp EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred eeEEEeCCCC-CEEEEEECCCC----------CEEEEEeCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence 3445567887 45599999999 799999999999999964 566766666544 456
Q ss_pred CCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 157 TDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 157 ~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
+.++.+++|+... +...+.+|...| ++++|+ |++.+|++++.|++|++||+. + +.+..+.+|...|.++
T Consensus 404 ~~d~~v~~~~~~~~~~~~~~~~~~~v-~~~~~s--~d~~~l~~~~~d~~v~~w~~~-~------~~~~~~~~~~~~v~~~ 473 (577)
T 2ymu_A 404 SDDKTVKLWNRNGQLLQTLTGHSSSV-WGVAFS--PDDQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVRGV 473 (577)
T ss_dssp ETTSEEEEECTTCCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETT-S------CEEEEEECCSSCEEEE
T ss_pred eCCCEEEEEeCCCCEEEEecCCCCCe-EEEEEC--CCCCEEEEEcCCCEEEEEECC-C------CEEEEEcCCCCCEEEE
Confidence 6788899998543 455667899999 999999 889999999999999999964 2 5778889999999999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
+|+|++ .+||+++.|+ |++||.. + ..+..+.+|...|++|+|+|++++|++++.||.|+|||+
T Consensus 474 ~~spd~------~~las~~~d~~i~iw~~~-~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-------- 537 (577)
T 2ymu_A 474 AFSPDG------QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-------- 537 (577)
T ss_dssp EECTTS------CEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT--------
T ss_pred EEcCCC------CEEEEEeCCCEEEEEcCC-C-CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC--------
Confidence 999999 8999999999 9999964 4 677888999999999999999999999999999999997
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
+| +++..+.+|...|++++|+|++++|+|++.|++|++||
T Consensus 538 -~~--------~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 538 -NG--------QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp -TS--------CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -CC--------CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 24 33578999999999999999999999999999999997
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.97 E-value=2e-27 Score=238.48 Aligned_cols=266 Identities=13% Similarity=0.194 Sum_probs=213.6
Q ss_pred cceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCcee---eEEe--ccCC----------
Q 008363 89 LPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTM---KAIY--LSSM---------- 153 (568)
Q Consensus 89 ~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~---~~l~--~~~~---------- 153 (568)
........+|.+ .+.+++|+|++ .+|++++ ||.|+||++.++... ..+. .+..
T Consensus 41 ~~~~~~~~~h~~-~v~~~~~~~~~----------~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 108 (337)
T 1gxr_A 41 HARQINTLNHGE-VVCAVTISNPT----------RHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108 (337)
T ss_dssp EEEEEEEECCSS-CCCEEEECSSS----------SEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTT
T ss_pred ccccceeccCCC-ceEEEEEecCC----------cEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCC
Confidence 344555668888 55599999999 7999998 999999999875432 2222 2221
Q ss_pred ----ccCCCCceEEEeecce----ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe
Q 008363 154 ----KEGTDPRFVKLEPVFR----CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF 225 (568)
Q Consensus 154 ----~~~~~~~~v~~~~~~~----~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 225 (568)
+.++.++.+.+|+... ......+|...| .+++|+ |++.+|++++.||.|++||+.+. .++..+
T Consensus 109 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~------~~~~~~ 179 (337)
T 1gxr_A 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC-YALAIS--PDSKVCFSCCSDGNIAVWDLHNQ------TLVRQF 179 (337)
T ss_dssp SSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCCcceeeecccCCCce-EEEEEC--CCCCEEEEEeCCCcEEEEeCCCC------ceeeee
Confidence 4566788899998765 334556788888 999999 78999999999999999999876 788899
Q ss_pred eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363 226 SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 226 ~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw 304 (568)
..|...|.+++|+|++ .+|++++.|+ |++||+++. ..+..+ .|...+.+++|+|++++|++++.|+.|++|
T Consensus 180 ~~~~~~i~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 180 QGHTDGASCIDISNDG------TKLWTGGLDNTVRSWDLREG-RQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp CCCSSCEEEEEECTTS------SEEEEEETTSEEEEEETTTT-EEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecccCceEEEEECCCC------CEEEEEecCCcEEEEECCCC-ceEeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 9999999999999998 8999999999 999999987 555555 467889999999999999999999999999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeee
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCG 384 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 384 (568)
|++. ++ ...+..|...|.+++|+|++.+|++++.||.|++|++.++....... ......+.
T Consensus 252 ~~~~--------~~---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~ 312 (337)
T 1gxr_A 252 HVNK--------PD---------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSC 312 (337)
T ss_dssp ETTS--------SC---------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEE
T ss_pred ECCC--------CC---------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEec--CCCcEEEE
Confidence 9954 22 24677899999999999999999999999999999998876553311 12234555
Q ss_pred cccCCCCceEEcccCCCC
Q 008363 385 SVTEDESAITVNTPLDNT 402 (568)
Q Consensus 385 s~~~~~~~i~~~~~~~~~ 402 (568)
.+++++..+.++.....+
T Consensus 313 ~~s~~~~~l~~~~~dg~i 330 (337)
T 1gxr_A 313 DISVDDKYIVTGSGDKKA 330 (337)
T ss_dssp EECTTSCEEEEEETTSCE
T ss_pred EECCCCCEEEEecCCCeE
Confidence 788888888776654433
No 41
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.6e-29 Score=259.14 Aligned_cols=250 Identities=10% Similarity=0.115 Sum_probs=186.5
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC--ceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
|.+ .|++++|+|++ .+||+|+.||.|+|||+.++ +.+..+ .
T Consensus 10 ~~~-~v~~~~~s~~g----------~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------------------------~ 52 (377)
T 3dwl_C 10 LPK-PSYEHAFNSQR----------TEFVTTTATNQVELYEQDGNGWKHARTF--------------------------S 52 (377)
T ss_dssp CSS-CCSCCEECSSS----------SEEECCCSSSCBCEEEEETTEEEECCCB--------------------------C
T ss_pred CCC-cEEEEEECCCC----------CEEEEecCCCEEEEEEccCCceEEEEEE--------------------------e
Confidence 445 55699999999 89999999999999999986 444443 7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+|...| ++++|+ |++++|++|+.||+|++||+.+.. ...+...+.+|...|.+++|+|++ .+|++++.
T Consensus 53 ~h~~~v-~~~~~s--~~~~~l~s~s~d~~v~vwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~ 120 (377)
T 3dwl_C 53 DHDKIV-TCVDWA--PKSNRIVTCSQDRNAYVYEKRPDG---TWKQTLVLLRLNRAATFVRWSPNE------DKFAVGSG 120 (377)
T ss_dssp CCSSCE-EEEEEC--TTTCCEEEEETTSSEEEC---------CCCCEEECCCCSSCEEEEECCTTS------SCCEEEES
T ss_pred cCCceE-EEEEEe--CCCCEEEEEeCCCeEEEEEcCCCC---ceeeeeEecccCCceEEEEECCCC------CEEEEEec
Confidence 899999 999999 889999999999999999998762 023677788999999999999998 89999999
Q ss_pred CC-EEEEECCCCCc--ceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC--ccccceE
Q 008363 256 GG-LKFWDIRDPFR--PLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG--TKQQGLH 329 (568)
Q Consensus 256 d~-v~lwD~~~~~~--~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~--~~~~~l~ 329 (568)
|+ |++||++.... ....+.. |...|++++|+|++++|++++.|+.|++||++....+.......... ....++.
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (377)
T 3dwl_C 121 ARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCA 200 (377)
T ss_dssp SSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEE
T ss_pred CCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhh
Confidence 99 99999997732 4566776 99999999999999999999999999999996422110000000000 0113344
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee----eccCCCCCcceeeeecccCCCCceEEccc
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV----EKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~----~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
.+ +|...|++++|+|++.+|++++.||.|++||+.++.. ......+ ...+.+.++++++..++.+..
T Consensus 201 ~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~ 271 (377)
T 3dwl_C 201 EY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLS-QLPLRSLLWANESAIVAAGYN 271 (377)
T ss_dssp CC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECS-SSCEEEEEEEETTEEEEEESS
T ss_pred cc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCC-CCceEEEEEcCCCCEEEEEcC
Confidence 55 8999999999999999999999999999999987764 2221222 223456678888877776643
No 42
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=99.96 E-value=8.5e-28 Score=260.63 Aligned_cols=261 Identities=17% Similarity=0.257 Sum_probs=213.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
+....+|.+ .+++++|+|++ .+|++++.||.|++||+.. ..+..+.++.. +.+.
T Consensus 296 ~~~~~~h~~-~v~~~~~~~~~----------~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~ 363 (577)
T 2ymu_A 296 LQTLTGHSS-SVWGVAFSPDG----------QTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363 (577)
T ss_dssp EEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEecCCC-CeEEEEECCCC----------CEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEe
Confidence 344567888 55699999999 7999999999999999876 34444544433 4566
Q ss_pred CCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 158 DPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 158 ~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
.++.+++|+... +...+.+|...| .+++|+ |++.+|++|+.|+.|++||.. + +.+..+.+|...|.+++
T Consensus 364 ~dg~v~~~~~~~~~~~~~~~~~~~v-~~~~~s--~dg~~l~~~~~d~~v~~~~~~-~------~~~~~~~~~~~~v~~~~ 433 (577)
T 2ymu_A 364 DDKTVKLWNRNGQLLQTLTGHSSSV-RGVAFS--PDGQTIASASDDKTVKLWNRN-G------QLLQTLTGHSSSVWGVA 433 (577)
T ss_dssp TTSEEEEEETTCCEEEEEECCSSCE-EEEEEC--TTSSCEEEEETTSEEEEECTT-C------CEEEEEECCSSCEEEEE
T ss_pred CCCEEEEEcCCCCEEEEecCCCCCe-EEEEEC--CCCCEEEEEeCCCEEEEEeCC-C------CEEEEecCCCCCeEEEE
Confidence 788899998543 455667899999 999999 899999999999999999964 2 67788899999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
|+|++ .+|++++.|+ |++||+. . ..+..+.+|...|++++|+|++++|++++.|+.|++||.
T Consensus 434 ~s~d~------~~l~~~~~d~~v~~w~~~-~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~--------- 496 (577)
T 2ymu_A 434 FSPDD------QTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--------- 496 (577)
T ss_dssp ECTTS------SEEEEEETTSEEEEEETT-S-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET---------
T ss_pred ECCCC------CEEEEEcCCCEEEEEECC-C-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC---------
Confidence 99998 8999999999 9999975 3 667788899999999999999999999999999999997
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
+|+ .+..+.+|...|++++|+|++++|++++.||.|++||+.. ........+. ..+.+..+++++..|+.
T Consensus 497 ~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-~~~~~~~~h~-~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 497 NGQ--------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHS-SSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp TSC--------EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CEEEEEECCS-SCEEEEEECTTSSCEEE
T ss_pred CCC--------EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-CEEEEEcCCC-CCEEEEEEcCCCCEEEE
Confidence 243 3578899999999999999999999999999999999753 3333323322 33456678999988887
Q ss_pred cccCCC
Q 008363 396 NTPLDN 401 (568)
Q Consensus 396 ~~~~~~ 401 (568)
++....
T Consensus 567 ~~~D~~ 572 (577)
T 2ymu_A 567 ASSDKT 572 (577)
T ss_dssp EETTSC
T ss_pred EeCCCE
Confidence 655443
No 43
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.96 E-value=1.2e-27 Score=238.93 Aligned_cols=236 Identities=16% Similarity=0.287 Sum_probs=193.8
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.....+|... +.+++|+|++ .+|++|+.||.|+|||+.+++++..+
T Consensus 58 ~~~~~~h~~~-v~~~~~~~~~----------~~l~s~~~d~~i~vwd~~~~~~~~~~----------------------- 103 (312)
T 4ery_A 58 EKTISGHKLG-ISDVAWSSDS----------NLLVSASDDKTLKIWDVSSGKCLKTL----------------------- 103 (312)
T ss_dssp EEEECCCSSC-EEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEE-----------------------
T ss_pred chhhccCCCc-eEEEEEcCCC----------CEEEEECCCCEEEEEECCCCcEEEEE-----------------------
Confidence 3345678884 5599999999 89999999999999999998888776
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| .+++|+ |++.+|++|+.||+|++||+.++ .++..+..|...|.+++|+|++ .+|+
T Consensus 104 ---~~~~~~v-~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~ 165 (312)
T 4ery_A 104 ---KGHSNYV-FCCNFN--PQSNLIVSGSFDESVRIWDVKTG------KCLKTLPAHSDPVSAVHFNRDG------SLIV 165 (312)
T ss_dssp ---ECCSSCE-EEEEEC--SSSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTS------SEEE
T ss_pred ---cCCCCCE-EEEEEc--CCCCEEEEEeCCCcEEEEECCCC------EEEEEecCCCCcEEEEEEcCCC------CEEE
Confidence 7788888 999999 88999999999999999999876 7888899999999999999998 8999
Q ss_pred EEcCCC-EEEEECCCCCcceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+++.|+ |++||+++. ..+..+ ..+...+..++|+|++++|++++.|+.|++||++. + +++.
T Consensus 166 ~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~--------~~~~ 228 (312)
T 4ery_A 166 SSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK--------G--------KCLK 228 (312)
T ss_dssp EEETTSCEEEEETTTC-CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT--------T--------EEEE
T ss_pred EEeCCCcEEEEECCCC-ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC--------C--------cEEE
Confidence 999999 999999987 555444 45677899999999999999999999999999954 3 2345
Q ss_pred EEecCCCCEEE--EEEe-cCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 330 LVNCSSFAIWS--VQVS-RLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 330 ~~~~h~~~V~~--l~~s-p~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
.+.+|...+.+ ..|+ +++.+|++++.||.|++||+.++........+.. ...+.++.+++..+++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~~ 298 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD-VVISTACHPTENIIASAA 298 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS-CEEEEEECSSSSEEEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC-cEEEEeecCcCCceEEEE
Confidence 77777754332 2344 5689999999999999999998877665444332 344556777777776654
No 44
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.9e-27 Score=240.32 Aligned_cols=241 Identities=15% Similarity=0.197 Sum_probs=200.6
Q ss_pred CcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 88 ALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 88 ~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
...+...+.+|.+ .|.+++|+|++ .+|++|+.||.|+|||+.+++.+..+
T Consensus 21 ~~~~~~~l~~h~~-~v~~~~~s~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~------------------- 70 (369)
T 3zwl_B 21 SHMKAIKLTGHER-PLTQVKYNKEG----------DLLFSCSKDSSASVWYSLNGERLGTL------------------- 70 (369)
T ss_dssp CSEEEEEEECCSS-CEEEEEECTTS----------CEEEEEESSSCEEEEETTTCCEEEEE-------------------
T ss_pred cccccEEEEEeec-eEEEEEEcCCC----------CEEEEEeCCCEEEEEeCCCchhhhhh-------------------
Confidence 4456666789999 55599999999 79999999999999999998888776
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+|...| .+++|+ |++.+|++++.||+|++||+.++ .++..+. |...|.+++|+|++
T Consensus 71 -------~~h~~~v-~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~-~~~~v~~~~~~~~~------ 127 (369)
T 3zwl_B 71 -------DGHTGTI-WSIDVD--CFTKYCVTGSADYSIKLWDVSNG------QCVATWK-SPVPVKRVEFSPCG------ 127 (369)
T ss_dssp -------CCCSSCE-EEEEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEE-CSSCEEEEEECTTS------
T ss_pred -------hhcCCcE-EEEEEc--CCCCEEEEEeCCCeEEEEECCCC------cEEEEee-cCCCeEEEEEccCC------
Confidence 7888999 999999 78999999999999999999876 6777776 88999999999999
Q ss_pred cEEEEEcCC-----C-EEEEECCCCCc----------ceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEEEEEcccc
Q 008363 248 NVILTAGHG-----G-LKFWDIRDPFR----------PLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 248 ~~las~s~d-----~-v~lwD~~~~~~----------~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~ 309 (568)
.+|++++.+ + |++||+..... .+..+..|.. .+.+++|+|++++|++++.||.|++||++..
T Consensus 128 ~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 128 NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTT
T ss_pred CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence 899999888 8 99999987631 3344455665 8999999999999999999999999999541
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED 389 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 389 (568)
+ ..+..+..|...|.+++|+|++.+|++++.||.|++||+.++........ .....+..++++
T Consensus 208 -------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~ 270 (369)
T 3zwl_B 208 -------Y--------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET--DCPLNTAVITPL 270 (369)
T ss_dssp -------T--------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSCEEEEEECSS
T ss_pred -------c--------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecC--CCCceeEEecCC
Confidence 2 34578889999999999999999999999999999999988766554331 222344467777
Q ss_pred CCceEEccc
Q 008363 390 ESAITVNTP 398 (568)
Q Consensus 390 ~~~i~~~~~ 398 (568)
+..+.++..
T Consensus 271 ~~~l~~~~~ 279 (369)
T 3zwl_B 271 KEFIILGGG 279 (369)
T ss_dssp SSEEEEEEC
T ss_pred CceEEEeec
Confidence 777766543
No 45
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.96 E-value=1e-27 Score=266.53 Aligned_cols=237 Identities=14% Similarity=0.156 Sum_probs=191.5
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.+|.+ .|++|+|+|++. .+|++|+.||+|+||++......... +...
T Consensus 377 ~l~~H~~-~V~~v~~~~~~~---------~~l~s~s~D~~i~~W~~~~~~~~~~~---------------------~~~~ 425 (694)
T 3dm0_A 377 TMRAHTD-MVTAIATPIDNA---------DIIVSASRDKSIILWKLTKDDKAYGV---------------------AQRR 425 (694)
T ss_dssp EEECCSS-CEEEEECCTTCC---------SEEEEEETTSEEEEEECCCSTTCSCE---------------------EEEE
T ss_pred hcccCCc-eeEEEEecCCCC---------CEEEEEeCCCcEEEEEccCCCccccc---------------------ccce
Confidence 4578999 555999999865 79999999999999999863221000 0111
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
+.+|...| .+++|+ +++.+|++|+.||+|+|||+.++ ..+..+.+|...|.+++|+|++ .+|+++
T Consensus 426 ~~~h~~~v-~~v~~s--~~g~~l~sgs~Dg~v~vwd~~~~------~~~~~~~~h~~~v~~~~~s~~~------~~l~s~ 490 (694)
T 3dm0_A 426 LTGHSHFV-EDVVLS--SDGQFALSGSWDGELRLWDLAAG------VSTRRFVGHTKDVLSVAFSLDN------RQIVSA 490 (694)
T ss_dssp EECCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECTTS------SCEEEE
T ss_pred ecCCCCcE-EEEEEC--CCCCEEEEEeCCCcEEEEECCCC------cceeEEeCCCCCEEEEEEeCCC------CEEEEE
Confidence 27899999 999999 88999999999999999999876 7888999999999999999999 899999
Q ss_pred cCCC-EEEEECCCCCcceee---eCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 254 GHGG-LKFWDIRDPFRPLWD---IHPAPKFIYGLDWLPDP--GCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~~---~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
+.|+ |++||+... ..... ..+|...|++++|+|++ ..|++++.|++|++||++. + +.
T Consensus 491 s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~--------~--------~~ 553 (694)
T 3dm0_A 491 SRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--------C--------KL 553 (694)
T ss_dssp ETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT--------C--------CE
T ss_pred eCCCEEEEEECCCC-cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC--------C--------cE
Confidence 9999 999998754 22221 24788999999999987 5899999999999999954 3 23
Q ss_pred eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
+..+.+|...|++++|+|++.+|++++.||.|++||+.++........+. .+.+.++++++..+..
T Consensus 554 ~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~--~v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 554 RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS--VIHALCFSPNRYWLCA 619 (694)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCSS--CEEEEEECSSSSEEEE
T ss_pred EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCCC--cEEEEEEcCCCcEEEE
Confidence 46888999999999999999999999999999999999887655433222 2444456666655544
No 46
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=1.5e-28 Score=246.24 Aligned_cols=221 Identities=19% Similarity=0.300 Sum_probs=174.8
Q ss_pred EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363 92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
+..+.+|.+ .|++++|+|+ + .+|++|+.|++|+|||+.++. ....+
T Consensus 50 ~~~l~gH~~-~V~~v~~~~~~~~----------~~l~s~s~D~~v~iWd~~~~~~~~~~~~------------------- 99 (316)
T 3bg1_A 50 IADLRGHEG-PVWQVAWAHPMYG----------NILASCSYDRKVIIWREENGTWEKSHEH------------------- 99 (316)
T ss_dssp EEEEECCSS-CEEEEEECCGGGS----------SCEEEEETTSCEEEECCSSSCCCEEEEE-------------------
T ss_pred EEEEcCCCc-cEEEEEeCCCCCC----------CEEEEEECCCEEEEEECCCCcceEEEEc-------------------
Confidence 345678998 5669999864 5 799999999999999998764 33333
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC----
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD---- 243 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~---- 243 (568)
.+|...| .+++|+|..++.+|++|+.||+|++||+..... ......+.+|...|.+++|+|+...
T Consensus 100 -------~~h~~~V-~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 168 (316)
T 3bg1_A 100 -------AGHDSSV-NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ---WEVKKINNAHTIGCNAVSWAPAVVPGSLI 168 (316)
T ss_dssp -------CCCSSCC-CEEEECCTTTCSCEEEECSSSCEEEEEECSSSC---EEECCBTTSSSSCBCCCEECCCCCC----
T ss_pred -------cCCCCce-EEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC---cceeeeeccccCCcceEEEccccCCcccc
Confidence 6899999 999999544488999999999999999985411 1223456789999999999997300
Q ss_pred -------CCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCC----CEEEEEeCCCcEEEEEcccc
Q 008363 244 -------SDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDP----GCVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 244 -------~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~----~~l~s~~~dg~I~lwd~~~~ 309 (568)
.....+|++|+.|+ |++||++... .++..+.+|...|++++|+|++ .+|++++.|++|+|||++..
T Consensus 169 ~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 169 DHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDA 248 (316)
T ss_dssp --CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSST
T ss_pred ccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCc
Confidence 00026899999999 9999997542 3567788999999999999987 88999999999999999642
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
. .+.. ....+..|...|++++|+|++.+|++++.||+|+||+..
T Consensus 249 ~-----~~~~-------~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 S-----SNTW-------SPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp T-----CCCC-------BCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred c-----ccch-------hhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 1 0111 113556789999999999999999999999999999985
No 47
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.3e-27 Score=235.26 Aligned_cols=267 Identities=18% Similarity=0.257 Sum_probs=203.2
Q ss_pred eeeccCCccceeecccCcccCCCCCcccCCCCCCCcceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCc
Q 008363 54 QIYHGSERDSAVCDVLGDFLSKPSLVSCPIPKDIALPRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGS 133 (568)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~ 133 (568)
++..|+..+ .++.+.|+-....+. ......+.....+|.. .|.+++|+|++ ++||+|+.||+
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd~------~tg~~~~~~~~~~~~~-~V~~v~~~~~~----------~~l~sgs~Dg~ 90 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWSA------SSGDILQLLQMEQPGE-YISSVAWIKEG----------NYLAVGTSSAE 90 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEET------TTCCEEEEEECCSTTC-CEEEEEECTTS----------SEEEEEETTSE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEEC------CCCCEEEEEEecCCCC-eEEEEEECCCC----------CEEEEEECCCc
Confidence 455676544 444444443322222 1112223333446666 56699999999 89999999999
Q ss_pred EEEEECCCCceeeEEeccCC------------ccCCCCceEEEeecce---ecccccCCcCccceEEEEccCCCCCEEEE
Q 008363 134 LEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLA 198 (568)
Q Consensus 134 V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~s 198 (568)
|+||++.+++++..+.+|.. +.++.+..+.++.... ......+|...+ .++.|. +++.+|++
T Consensus 91 v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~s 167 (318)
T 4ggc_A 91 VQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEV-CGLRWA--PDGRHLAS 167 (318)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEE
T ss_pred EEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCce-EEEEEc--CCCCEEEE
Confidence 99999999999999888765 4556677777776654 334567899998 999998 88999999
Q ss_pred EeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE--EEEcCCC-EEEEECCCCCcceeeeCC
Q 008363 199 GCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI--LTAGHGG-LKFWDIRDPFRPLWDIHP 275 (568)
Q Consensus 199 gs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l--as~s~d~-v~lwD~~~~~~~~~~~~~ 275 (568)
++.||+|++||+.++.. ..........|.+.|.+++++|.+. .++ ++++.++ |++||.+.. ..... ..
T Consensus 168 ~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~i~lwd~~~~-~~~~~-~~ 238 (318)
T 4ggc_A 168 GGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQS-----NVLATGGGTSDRHIRIWNVCSG-ACLSA-VD 238 (318)
T ss_dssp EETTSCEEEEESSCBTT--BSCCSEEECCCCSCEEEEEECTTST-----TEEEEEECTTTCEEEEEETTTC-CEEEE-EE
T ss_pred EecCcceeEEECCCCcc--cccceeeecccCCceEEEEecCCCC-----cEEEEEecCCCCEEEEEecccc-ccccc-cc
Confidence 99999999999986532 1234556678899999999999872 554 3556677 999999876 33333 34
Q ss_pred CCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE
Q 008363 276 APKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC 353 (568)
Q Consensus 276 h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~ 353 (568)
+...+..+.|+|++..+++++ .|+.|++||+++ ++ ++..+.+|.+.|++++|+|++.+|+||
T Consensus 239 ~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~--------~~--------~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 239 AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT--------MA--------KVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT--------CC--------EEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC--------Cc--------EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 567799999999999988765 699999999953 53 357899999999999999999999999
Q ss_pred eCCCeEEEEEcCC
Q 008363 354 SADGTVHRFQLTA 366 (568)
Q Consensus 354 s~Dg~v~iwd~~~ 366 (568)
+.||+|+|||+..
T Consensus 303 s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 303 AADETLRLWRCFE 315 (318)
T ss_dssp ETTTEEEEECCSC
T ss_pred ecCCeEEEEECCC
Confidence 9999999999853
No 48
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.3e-27 Score=247.67 Aligned_cols=234 Identities=17% Similarity=0.288 Sum_probs=197.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEEE
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVKL 164 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~~ 164 (568)
.|.+ .|.+++|+|++ .+|++|+.||.|+|||+.+++.+..+.+|.. +.++.++.+.+
T Consensus 132 ~~~~-~v~~v~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i 200 (401)
T 4aez_A 132 DEST-YVASVKWSHDG----------SFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHH 200 (401)
T ss_dssp CTTC-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEE
T ss_pred CCCC-CEEEEEECCCC----------CEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEE
Confidence 3666 56699999999 7999999999999999999998888877655 56778899999
Q ss_pred eecce---ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363 165 EPVFR---CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241 (568)
Q Consensus 165 ~~~~~---~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 241 (568)
|+... ....+.+|...| .+++|+ |++.+|++|+.||.|++||+.+. .++..+..|...|.+++|+|++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~ 271 (401)
T 4aez_A 201 HDVRIANHQIGTLQGHSSEV-CGLAWR--SDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQ 271 (401)
T ss_dssp EETTSSSCEEEEEECCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTS
T ss_pred EecccCcceeeEEcCCCCCe-eEEEEc--CCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCC
Confidence 99863 445667899999 999999 78999999999999999999976 7888888999999999999987
Q ss_pred CCCCCCcEEEEEc--CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--CCCcEEEEEccccccCCCCC
Q 008363 242 SDSDSANVILTAG--HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--DDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 242 ~~~~~~~~las~s--~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lwd~~~~~~~~~~~ 316 (568)
..++++++ .|+ |++||++++ .++..+. +...|++++|+|++++|++++ .||.|++||++.
T Consensus 272 -----~~ll~~~~gs~d~~i~i~d~~~~-~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~-------- 336 (401)
T 4aez_A 272 -----SNLLATGGGTMDKQIHFWNAATG-ARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS-------- 336 (401)
T ss_dssp -----TTEEEEECCTTTCEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET--------
T ss_pred -----CCEEEEecCCCCCEEEEEECCCC-CEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC--------
Confidence 37888876 688 999999987 6666664 567899999999999999954 799999999954
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+.. ..+..+.+|...|.+++|+|++.+|++++.||.|++|++.++....
T Consensus 337 ~~~------~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 337 SGL------TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp TEE------EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred ccc------eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 222 2334577899999999999999999999999999999998765543
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-27 Score=248.58 Aligned_cols=235 Identities=18% Similarity=0.302 Sum_probs=197.9
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC----CceeeEEeccCC---------------cc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL----LRTMKAIYLSSM---------------KE 155 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~----~~~~~~l~~~~~---------------~~ 155 (568)
...|.. .+.+++|+|++ .+|++|+.||.|+||++.+ ...+..+.+|.. +.
T Consensus 63 ~~~~~~-~v~~~~~s~~~----------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 131 (416)
T 2pm9_A 63 SLQVDS-KFNDLDWSHNN----------KIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLAS 131 (416)
T ss_dssp CCCCSS-CEEEEEECSSS----------SCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEE
T ss_pred EEecCC-ceEEEEECCCC----------CeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEE
Confidence 346777 55599999999 7999999999999999987 346666655543 45
Q ss_pred CCCCceEEEeecceec-----------ccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeE
Q 008363 156 GTDPRFVKLEPVFRCS-----------MLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLL 223 (568)
Q Consensus 156 ~~~~~~v~~~~~~~~~-----------~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~ 223 (568)
++.++.+++|+..... ....+|...| .+++|+ |+ +.+|++|+.||.|++||+.+. .++.
T Consensus 132 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~~l~~~~~dg~v~iwd~~~~------~~~~ 202 (416)
T 2pm9_A 132 GGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV-ISLAWN--QSLAHVFASAGSSNFASIWDLKAK------KEVI 202 (416)
T ss_dssp ECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC-CEEEEC--SSCTTEEEEESSSSCEEEEETTTT------EEEE
T ss_pred EcCCCeEEEEECCCCccccccccccccccccCCCCCe-eEEEeC--CCCCcEEEEEcCCCCEEEEECCCC------Ccce
Confidence 6788899999887533 1235788999 999999 66 689999999999999999876 7777
Q ss_pred EeeCC------CCCeeEEEEccCCCCCCCCcEEEEEcCC----CEEEEECCCCCcceeeeC-CCCCCeEEEEEcC-CCCE
Q 008363 224 CFSAD------TLPIRAVSWAPAESDSDSANVILTAGHG----GLKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP-DPGC 291 (568)
Q Consensus 224 ~~~~h------~~~V~~v~~~p~~~~~~~~~~las~s~d----~v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp-~~~~ 291 (568)
.+..| ...|.+++|+|++ ..+|++++.| .|++||+++...++..+. +|...|++++|+| ++.+
T Consensus 203 ~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 203 HLSYTSPNSGIKQQLSVVEWHPKN-----STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277 (416)
T ss_dssp EECCCCCSSCCCCCEEEEEECSSC-----TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSC
T ss_pred EEeccccccccCCceEEEEECCCC-----CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCe
Confidence 77766 7899999999996 2689999887 599999998766777787 8999999999999 9999
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCCeee
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
|++++.||.|++||++. ++ ++..+.+|...|++++|+|++ .+|++++.||.|++|++.+....
T Consensus 278 l~s~~~dg~v~~wd~~~--------~~--------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPES--------AE--------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp EEEEESSSEEEEECSSS--------CC--------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred EEEEeCCCCEEEeeCCC--------Cc--------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 99999999999999953 43 346888999999999999998 89999999999999999876543
No 50
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.96 E-value=1.4e-27 Score=250.19 Aligned_cols=232 Identities=13% Similarity=0.133 Sum_probs=185.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-----------eeeEEeccC------------C
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-----------TMKAIYLSS------------M 153 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-----------~~~~l~~~~------------~ 153 (568)
.|.+ .|.+++|+|++ .+||+|+.||.|+||++.++. ....+.+|. .
T Consensus 26 ~~~~-~V~~v~~s~~g----------~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 26 AEAD-IISTVEFNHSG----------ELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CGGG-SEEEEEECSSS----------SEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccC-cEEEEEECCCC----------CEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccC
Confidence 3445 66799999999 899999999999999999866 466677665 1
Q ss_pred ----------------ccCCCCceEEEeecceec------------------------------------------cccc
Q 008363 154 ----------------KEGTDPRFVKLEPVFRCS------------------------------------------MLKC 175 (568)
Q Consensus 154 ----------------~~~~~~~~v~~~~~~~~~------------------------------------------~~~~ 175 (568)
+.++.++.+++|+..... ....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 445678889999876511 1136
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-------EeeCCCCCeeEEEEccCCCCCCCCc
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-------CFSADTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-------~~~~h~~~V~~v~~~p~~~~~~~~~ 248 (568)
+|...| ++++|+ |++.+|++| .||+|++||+... ...+. .+.+|...|.+++|+|++ +.
T Consensus 175 ~h~~~v-~~~~~~--~~~~~l~s~-~d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~ 240 (447)
T 3dw8_B 175 AHTYHI-NSISIN--SDYETYLSA-DDLRINLWHLEIT-----DRSFNIVDIKPANMEELTEVITAAEFHPNS-----CN 240 (447)
T ss_dssp CCSSCC-CEEEEC--TTSSEEEEE-CSSEEEEEETTEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSSC-----TT
T ss_pred CCCcce-EEEEEc--CCCCEEEEe-CCCeEEEEECCCC-----CceeeeeecccccccccCcceEEEEECCCC-----Cc
Confidence 899999 999999 789999999 7999999999843 13333 256899999999999996 37
Q ss_pred EEEEEcCCC-EEEEECCCCCcc----eeeeCCCCC------------CeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 249 VILTAGHGG-LKFWDIRDPFRP----LWDIHPAPK------------FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~~----~~~~~~h~~------------~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
+|++++.|+ |++||+++. .. +..+..|.. .|++++|+|++++|++++. +.|++||++..
T Consensus 241 ~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~-- 316 (447)
T 3dw8_B 241 TFVYSSSKGTIRLCDMRAS-ALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNME-- 316 (447)
T ss_dssp EEEEEETTSCEEEEETTTC-SSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCC--
T ss_pred EEEEEeCCCeEEEEECcCC-ccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCC--
Confidence 999999999 999999987 43 677777776 8999999999999999999 99999999641
Q ss_pred CCCCCCCCccCccccceEEEecCCCC---------------EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFA---------------IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~---------------V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+++ +..+.+|... +..++|+|++.+|++++.||.|++||+.++...
T Consensus 317 -----~~~--------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 317 -----NRP--------VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp -----SSC--------SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred -----ccc--------cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 333 3567777532 334899999999999999999999999887653
No 51
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=1.2e-28 Score=256.17 Aligned_cols=223 Identities=11% Similarity=0.151 Sum_probs=183.9
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEecc----------CC---ccCCCCceEEEeecce--
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLS----------SM---KEGTDPRFVKLEPVFR-- 169 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~----------~~---~~~~~~~~v~~~~~~~-- 169 (568)
+++|+|++ .+|++++.||.|++||+.++.....+..+ .. +.++.++.+++|+...
T Consensus 61 ~~~~s~~g----------~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 61 GNTFEKVG----------SHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp TCEEEEEE----------TTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCE
T ss_pred ceeeeecC----------CeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcc
Confidence 78999999 79999999999999999875443322221 11 5667888999999765
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
+...+.+|...| ++++|+ |++.+|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+
T Consensus 131 ~~~~~~~h~~~v-~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~------~~~~~~~~h~~~v~~~~~~~~~------~~ 195 (420)
T 3vl1_A 131 QREIDQAHVSEI-TKLKFF--PSGEALISSSQDMQLKIWSVKDG------SNPRTLIGHRATVTDIAIIDRG------RN 195 (420)
T ss_dssp EEEETTSSSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CCCEEEECCSSCEEEEEEETTT------TE
T ss_pred eeeecccccCcc-EEEEEC--CCCCEEEEEeCCCeEEEEeCCCC------cCceEEcCCCCcEEEEEEcCCC------CE
Confidence 444557999999 999999 88999999999999999999876 6778889999999999999998 89
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCC---CCCCeEE---------------------EEEcCCCCEEEEEeCCCcEEEE
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHP---APKFIYG---------------------LDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~---h~~~i~~---------------------l~~sp~~~~l~s~~~dg~I~lw 304 (568)
|++++.|+ |++||++++ .++..+.. |...|.+ ++|+|++++|++++.||.|++|
T Consensus 196 l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 196 VLSASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEE
T ss_pred EEEEcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEE
Confidence 99999999 999999987 66666653 3444444 4557899999999999999999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCe
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~ 368 (568)
|++. ++.+ ......|...|++++|+|++. +|++++.||.|++||+.++.
T Consensus 275 d~~~--------~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 275 NVFS--------KEQT-------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp ETTT--------CCEE-------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred ECCC--------Ccee-------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9954 3222 223456889999999999998 99999999999999998753
No 52
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=8.8e-28 Score=245.85 Aligned_cols=198 Identities=15% Similarity=0.076 Sum_probs=160.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.++.++|+|+| ++||+++ .|++|+|||+.+++++..+ .|..
T Consensus 135 ~~~~v~fSpDg----------~~la~as~~~d~~i~iwd~~~~~~~~~~---------------------------~~~~ 177 (365)
T 4h5i_A 135 YTKLVYISREG----------TVAAIASSKVPAIMRIIDPSDLTEKFEI---------------------------ETRG 177 (365)
T ss_dssp CEEEEEECTTS----------SCEEEEESCSSCEEEEEETTTTEEEEEE---------------------------ECSS
T ss_pred CEEEEEEcCCC----------CEEEEEECCCCCEEEEeECCCCcEEEEe---------------------------CCCC
Confidence 46689999999 6776544 6899999999998877664 3566
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC--
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-- 257 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-- 257 (568)
.| ++|+|+ |+|.+|++++.| .+.+|+..++. .........|...|.+++|+|++ .++++++.++
T Consensus 178 ~V-~~v~fs--pdg~~l~s~s~~-~~~~~~~~~~~----~~~~~~~~~~~~~v~~v~fspdg------~~l~~~s~d~~~ 243 (365)
T 4h5i_A 178 EV-KDLHFS--TDGKVVAYITGS-SLEVISTVTGS----CIARKTDFDKNWSLSKINFIADD------TVLIAASLKKGK 243 (365)
T ss_dssp CC-CEEEEC--TTSSEEEEECSS-CEEEEETTTCC----EEEEECCCCTTEEEEEEEEEETT------EEEEEEEESSSC
T ss_pred ce-EEEEEc--cCCceEEeccce-eEEEEEeccCc----ceeeeecCCCCCCEEEEEEcCCC------CEEEEEecCCcc
Confidence 78 999999 899999999855 56666666551 12223456788999999999999 8898887652
Q ss_pred ---EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE-
Q 008363 258 ---LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL- 330 (568)
Q Consensus 258 ---v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~- 330 (568)
+++||+..... ....+.+|...|++++|+|+|++|++|+.|++|+|||+++ +++ +..
T Consensus 244 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~--------~~~--------~~~~ 307 (365)
T 4h5i_A 244 GIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD--------LSM--------SKIF 307 (365)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT--------TEE--------EEEE
T ss_pred eeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC--------CcE--------EEEe
Confidence 67888876532 2356678999999999999999999999999999999953 433 355
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+.+|...|++|+|+|+|++||+||.|++|+||++..
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 478999999999999999999999999999999943
No 53
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.96 E-value=4.1e-27 Score=240.08 Aligned_cols=250 Identities=15% Similarity=0.173 Sum_probs=193.5
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
..|.+ .|++++|+|++ .+|++|+.||.|+|||+.+++ .+..+
T Consensus 5 ~~~~~-~i~~~~~s~~~----------~~l~~~~~d~~v~i~~~~~~~~~~~~~~------------------------- 48 (372)
T 1k8k_C 5 SFLVE-PISCHAWNKDR----------TQIAICPNNHEVHIYEKSGNKWVQVHEL------------------------- 48 (372)
T ss_dssp ESCSS-CCCEEEECTTS----------SEEEEECSSSEEEEEEEETTEEEEEEEE-------------------------
T ss_pred cccCC-CeEEEEECCCC----------CEEEEEeCCCEEEEEeCCCCcEEeeeee-------------------------
Confidence 34777 55599999999 899999999999999999876 55554
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
.+|...| .+++|+ |++.+|++|+.||.|++||+.+.. ......+..|...|.+++|+|++ .+|+++
T Consensus 49 -~~h~~~v-~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~ 114 (372)
T 1k8k_C 49 -KEHNGQV-TGVDWA--PDSNRIVTCGTDRNAYVWTLKGRT----WKPTLVILRINRAARCVRWAPNE------KKFAVG 114 (372)
T ss_dssp -ECCSSCE-EEEEEE--TTTTEEEEEETTSCEEEEEEETTE----EEEEEECCCCSSCEEEEEECTTS------SEEEEE
T ss_pred -cCCCCcc-cEEEEe--CCCCEEEEEcCCCeEEEEECCCCe----eeeeEEeecCCCceeEEEECCCC------CEEEEE
Confidence 6788899 999999 789999999999999999998661 12334457899999999999998 899999
Q ss_pred cCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc--Cccccc
Q 008363 254 GHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA--GTKQQG 327 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~--~~~~~~ 327 (568)
+.|+ |++||++.... ......+|...|++++|+|++.+|++++.||.|++||++....+......... ......
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred eCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 9998 99999997742 22334678999999999999999999999999999998532211000000000 001144
Q ss_pred eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
+..+.+|...|.+++|+|++.+|++++.||.|++||+.++........+. ..+.+..+++++..++.+
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~ 262 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET-LPLLAVTFITESSLVAAG 262 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS-CCEEEEEEEETTEEEEEE
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCC-CCeEEEEEecCCCEEEEE
Confidence 56788999999999999999999999999999999998776554433222 234455677777666655
No 54
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.96 E-value=6.9e-27 Score=240.24 Aligned_cols=213 Identities=11% Similarity=0.126 Sum_probs=178.3
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.....+|.+ .|++++|+|+++ .+|++|+.||.|+|||+.+++....+.
T Consensus 66 ~~~~~~h~~-~v~~~~~~~~~~---------~~l~s~~~dg~i~iwd~~~~~~~~~~~---------------------- 113 (383)
T 3ei3_B 66 HRTASPFDR-RVTSLEWHPTHP---------TTVAVGSKGGDIILWDYDVQNKTSFIQ---------------------- 113 (383)
T ss_dssp EEEECCCSS-CEEEEEECSSCT---------TEEEEEEBTSCEEEEETTSTTCEEEEC----------------------
T ss_pred EEeccCCCC-CEEEEEECCCCC---------CEEEEEcCCCeEEEEeCCCcccceeee----------------------
Confidence 445568888 555999999985 699999999999999999877665441
Q ss_pred ccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCC
Q 008363 172 MLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~ 247 (568)
..+|...| .+++|+ | ++.+|++|+.||+|++||+... .+..+. .|...|.+++|+|++
T Consensus 114 --~~~h~~~v-~~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~------ 175 (383)
T 3ei3_B 114 --GMGPGDAI-TGMKFN--QFNTNQLFVSSIRGATTLRDFSGS-------VIQVFAKTDSWDYWYCCVDVSVSR------ 175 (383)
T ss_dssp --CCSTTCBE-EEEEEE--TTEEEEEEEEETTTEEEEEETTSC-------EEEEEECCCCSSCCEEEEEEETTT------
T ss_pred --cCCcCCce-eEEEeC--CCCCCEEEEEeCCCEEEEEECCCC-------ceEEEeccCCCCCCeEEEEECCCC------
Confidence 14789999 999999 6 6789999999999999999843 344443 345889999999999
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.+|++++.|+ |++||++ . .++..+.+|...|.+++|+|+++ +|++++.|+.|++||++.... .+
T Consensus 176 ~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~----~~-------- 241 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD----KN-------- 241 (383)
T ss_dssp TEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS----TT--------
T ss_pred CEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc----cc--------
Confidence 8999999999 9999995 3 67888889999999999999999 899999999999999975320 12
Q ss_pred cceEEEecCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCCCee
Q 008363 326 QGLHLVNCSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..+..+ +|...|++++|+| ++.+|++++.|+.|++||+.++..
T Consensus 242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 223444 6999999999999 999999999999999999987654
No 55
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.96 E-value=1.7e-26 Score=243.54 Aligned_cols=265 Identities=14% Similarity=0.207 Sum_probs=212.3
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccC
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEG 156 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~ 156 (568)
+....+.+|.+.++.++.| ++ ++|++|+.||+|++||+.+++.+..+.+|.. +.+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~----------~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~ 179 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--ED----------NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSG 179 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ET----------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTTEEEEE
T ss_pred cceEEEcCCCCCcEEEEEE--CC----------CEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCCEEEEE
Confidence 4455678999977766666 45 6999999999999999999999988887765 567
Q ss_pred CCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCC----------------
Q 008363 157 TDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSID---------------- 218 (568)
Q Consensus 157 ~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~---------------- 218 (568)
+.++.+++|+..+ +...+.+|...| .+++|++.+++.+|++|+.||+|++||+........
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~h~~~v-~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEGHNSTV-RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEE 258 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCSSCE-EEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGG
T ss_pred eCCCCEEEEECCCCcEEEEECCCCCcc-EEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCC
Confidence 8899999999865 566677899999 999999877889999999999999999986632110
Q ss_pred -CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 219 -SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 219 -~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
...+..+.+|...|.++ ++++ .+|++++.|+ |++||+++. .++..+.+|...|++++|+|++.+|++++
T Consensus 259 ~~~~~~~~~~~~~~v~~~--~~~~------~~l~~~~~d~~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 259 NPYFVGVLRGHMASVRTV--SGHG------NIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp CTTEEEEECCCSSCEEEE--EEET------TEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEccCccceEEEE--cCCC------CEEEEEeCCCeEEEEECCCC-cEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 01356788999999888 5566 7999999999 999999987 88888999999999999999999999999
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN 376 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~ 376 (568)
.||.|++||+++ | +++..+.+|...|.+++|+ +.+|++++.||.|++||+.+..........
T Consensus 330 ~dg~i~vwd~~~--------~--------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 391 (464)
T 3v7d_B 330 MDTTIRIWDLEN--------G--------ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT 391 (464)
T ss_dssp TTSCEEEEETTT--------T--------EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT
T ss_pred CCCcEEEEECCC--------C--------cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC
Confidence 999999999953 4 3457889999999999997 589999999999999999876543321111
Q ss_pred CcceeeeecccCCCCceEEc
Q 008363 377 RPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 377 ~~~~~~~~s~~~~~~~i~~~ 396 (568)
. ...+..+++++..++.+
T Consensus 392 ~--~~~~~~~~~~~~~l~~~ 409 (464)
T 3v7d_B 392 N--LSAITTFYVSDNILVSG 409 (464)
T ss_dssp T--CCCEEEEEECSSEEEEE
T ss_pred C--CccEEEEEeCCCEEEEe
Confidence 1 12222455555555544
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-26 Score=230.26 Aligned_cols=233 Identities=17% Similarity=0.209 Sum_probs=189.8
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-----------------
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------- 153 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------- 153 (568)
.+..+.+|.+ .|.+++| |++ .+|++|+.||.|+|||+.++.....+..+..
T Consensus 10 ~~~~l~~h~~-~v~~~~~-~~~----------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 77 (313)
T 3odt_A 10 LSATLKGHDQ-DVRDVVA-VDD----------SKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFG 77 (313)
T ss_dssp EEEEECCCSS-CEEEEEE-EET----------TEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEE
T ss_pred HHHHhhCCCC-CcEEEEe-cCC----------CEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEe
Confidence 4455678988 5559999 888 7999999999999999988777666655433
Q ss_pred ----------------------------------------ccCCCCceEEEeecceecccccCCcCccceEEEEccCCCC
Q 008363 154 ----------------------------------------KEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPH 193 (568)
Q Consensus 154 ----------------------------------------~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g 193 (568)
+.++.++.+.+|+..........|...+ .++.|.+. ++
T Consensus 78 ~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v-~~~~~~~~-~~ 155 (313)
T 3odt_A 78 GKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASV-WDAKVVSF-SE 155 (313)
T ss_dssp ETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCE-EEEEEEET-TT
T ss_pred cCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCce-eEEEEccC-CC
Confidence 2233445555565444444556788888 89998832 67
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCccee
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLW 271 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~ 271 (568)
.+|++++.||.|++||.. .....+.. |...|.+++|+|++ . |++++.|+ |++||+++. .++.
T Consensus 156 ~~l~~~~~d~~i~i~d~~--------~~~~~~~~~~~~~i~~~~~~~~~------~-~~~~~~dg~i~i~d~~~~-~~~~ 219 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND--------KVIKTFSGIHNDVVRHLAVVDDG------H-FISCSNDGLIKLVDMHTG-DVLR 219 (313)
T ss_dssp TEEEEEETTSCEEEEETT--------EEEEEECSSCSSCEEEEEEEETT------E-EEEEETTSEEEEEETTTC-CEEE
T ss_pred CEEEEEECCCCEEEEecC--------ceEEEEeccCcccEEEEEEcCCC------e-EEEccCCCeEEEEECCch-hhhh
Confidence 899999999999999944 66777777 99999999999998 5 88999998 999999987 7888
Q ss_pred eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEE
Q 008363 272 DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVA 351 (568)
Q Consensus 272 ~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~ 351 (568)
.+.+|...|++++|+|++ .|++++.||.|++||++. +++ +..+..|...|++++|+|++. ++
T Consensus 220 ~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~--------~~~--------~~~~~~~~~~i~~~~~~~~~~-~~ 281 (313)
T 3odt_A 220 TYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKEN--------GSL--------KQVITLPAISIWSVDCMSNGD-II 281 (313)
T ss_dssp EEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTT--------CCE--------EEEEECSSSCEEEEEECTTSC-EE
T ss_pred hhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCC--------Cce--------eEEEeccCceEEEEEEccCCC-EE
Confidence 888999999999999999 599999999999999954 433 468889999999999999998 66
Q ss_pred EEeCCCeEEEEEcCCCeeec
Q 008363 352 YCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 352 s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+++.||.|++|++.++....
T Consensus 282 ~~~~dg~i~iw~~~~~~~~~ 301 (313)
T 3odt_A 282 VGSSDNLVRIFSQEKSRWAS 301 (313)
T ss_dssp EEETTSCEEEEESCGGGCCC
T ss_pred EEeCCCcEEEEeCCCCceee
Confidence 79999999999998765543
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.6e-26 Score=239.64 Aligned_cols=274 Identities=15% Similarity=0.187 Sum_probs=211.4
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEEC----CCCc------eeeEEec---------
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEV----PLLR------TMKAIYL--------- 150 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~----~~~~------~~~~l~~--------- 150 (568)
.......|.+ .|.+++|+|++ . +||+|+.||.|+||++ .+++ ....+..
T Consensus 37 ~~~~~~~~~~-~v~~~~~s~~~----------~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 37 KILKEIVKLD-NIVSSTWNPLD----------ESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp EECEEEEECS-CCSEEEECSSC----------TTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred hheeeeeccC-ceEEEEECCCC----------CcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 3444566777 45599999999 6 9999999999999999 7776 3333332
Q ss_pred -cCC--------------ccCCCCceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC
Q 008363 151 -SSM--------------KEGTDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD 214 (568)
Q Consensus 151 -~~~--------------~~~~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~ 214 (568)
+.. +.++.++.+.+|+... ....+.+|...| .+++|+ |++.+|++++.||.|++||+.++.
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPI-VSVKWN--KDGTHIISMDVENVTILWNVISGT 182 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCE-EEEEEC--TTSSEEEEEETTCCEEEEETTTTE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccE-EEEEEC--CCCCEEEEEecCCeEEEEECCCCc
Confidence 221 4566778889998433 455567899999 999999 889999999999999999997542
Q ss_pred CC--------------------------------------------------CCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363 215 SS--------------------------------------------------IDSRPLLCFSADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 215 ~~--------------------------------------------------~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 244 (568)
.. ....++..+..|...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--- 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN--- 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT---
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC---
Confidence 10 0012334566789999999999998
Q ss_pred CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363 245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
.+|++++.|+ |++||+++. ..+..+..|...|.+++|+|++ +|++++.|+.|++||++. +
T Consensus 260 ---~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--------~------ 320 (425)
T 1r5m_A 260 ---KLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--------N------ 320 (425)
T ss_dssp ---TEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--------T------
T ss_pred ---CEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--------C------
Confidence 8999999999 999999987 7778888899999999999999 999999999999999953 4
Q ss_pred cccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe--------------------eeccCCCCCcc-eee
Q 008363 324 KQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA--------------------VEKDHSRNRPM-HFL 382 (568)
Q Consensus 324 ~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~--------------------~~~~~~~~~~~-~~~ 382 (568)
..+..+..|...|.+++|+|++.+|++++.||.|++||+.+.. .......+... ...
T Consensus 321 --~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 398 (425)
T 1r5m_A 321 --TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF 398 (425)
T ss_dssp --EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred --cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence 3346788899999999999999999999999999999998766 33332222222 455
Q ss_pred eecccCCCCceEEcccCCCC
Q 008363 383 CGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 383 ~~s~~~~~~~i~~~~~~~~~ 402 (568)
+..+++++..|++++....+
T Consensus 399 ~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 399 DLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp EEEECTTSSEEEEEESSSCC
T ss_pred EEEccCCCceEEEEecCceE
Confidence 56777888777776655444
No 58
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=9.2e-27 Score=243.69 Aligned_cols=216 Identities=19% Similarity=0.310 Sum_probs=178.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----------ceeeEEeccCCccCCCCce
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----------RTMKAIYLSSMKEGTDPRF 161 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----------~~~~~l~~~~~~~~~~~~~ 161 (568)
+.....|.+. |++++|+|+++ .+||+++.||.|+||++... ..+..+
T Consensus 121 ~~~~~~h~~~-v~~l~~~p~~~---------~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~------------- 177 (430)
T 2xyi_A 121 IEIKINHEGE-VNRARYMPQNA---------CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL------------- 177 (430)
T ss_dssp EEEEEEESSC-CSEEEEETTEE---------EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE-------------
T ss_pred EEEEEcCCCc-EEEEEECCCCC---------cEEEEECCCCcEEEEECCCcccccCccccCCCcEEe-------------
Confidence 4556889984 55999999843 79999999999999999762 222222
Q ss_pred EEEeecceecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCC-CCCceeEEeeCCCCCeeEEEEcc
Q 008363 162 VKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSS-IDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 162 v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~-~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
.+|...| ++++|+ |++. +|++|+.||+|++||+...... ....+...+.+|...|.+++|+|
T Consensus 178 -------------~~h~~~v-~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p 241 (430)
T 2xyi_A 178 -------------RGHQKEG-YGLSWN--PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHL 241 (430)
T ss_dssp -------------ECCSSCC-CCEEEC--TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECS
T ss_pred -------------cCCCCCe-EEEEeC--CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeC
Confidence 6888998 999999 6666 9999999999999999864210 01123567789999999999999
Q ss_pred CCCCCCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCC
Q 008363 240 AESDSDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
.+ ..+|++++.|+ |++||+++.. .++..+..|...|++++|+|++. +|++|+.||.|++||++...
T Consensus 242 ~~-----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~----- 311 (430)
T 2xyi_A 242 LH-----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK----- 311 (430)
T ss_dssp SC-----TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-----
T ss_pred CC-----CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-----
Confidence 54 28999999999 9999999763 56677779999999999999987 58899999999999997532
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
.++..+.+|...|++++|+|++ .+|++++.||.|+|||+..
T Consensus 312 ----------~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 312 ----------LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp ----------SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred ----------CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 3457888999999999999998 5799999999999999976
No 59
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.96 E-value=5.1e-27 Score=243.96 Aligned_cols=204 Identities=11% Similarity=0.120 Sum_probs=169.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.+|.+ .|.+++|+|++ .+|++|+.||.|+|||+.+++.+..+ .
T Consensus 136 ~~h~~-~v~~~~~~~~~----------~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------------~ 178 (420)
T 3vl1_A 136 QAHVS-EITKLKFFPSG----------EALISSSQDMQLKIWSVKDGSNPRTL--------------------------I 178 (420)
T ss_dssp TSSSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCCCEEE--------------------------E
T ss_pred ccccC-ccEEEEECCCC----------CEEEEEeCCCeEEEEeCCCCcCceEE--------------------------c
Confidence 47888 55599999999 79999999999999999998877766 7
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEE---------------
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSW--------------- 237 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~--------------- 237 (568)
+|...| ++++|+ |++.+|++|+.||+|++||+.++ +++..+.. |...|.+++|
T Consensus 179 ~h~~~v-~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 179 GHRATV-TDIAII--DRGRNVLSASLDGTIRLWECGTG------TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp CCSSCE-EEEEEE--TTTTEEEEEETTSCEEEEETTTT------EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred CCCCcE-EEEEEc--CCCCEEEEEcCCCcEEEeECCCC------ceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 788999 999999 88999999999999999999876 67777764 4444555554
Q ss_pred ------ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEcccc
Q 008363 238 ------APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKA 309 (568)
Q Consensus 238 ------~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~ 309 (568)
+|++ .+|++++.|+ |++||+++..........|...|++++|+|++. +|++++.||.|++||++.
T Consensus 250 v~~~~~s~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~- 322 (420)
T 3vl1_A 250 KNNLEFGTYG------KYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRS- 322 (420)
T ss_dssp CCTTCSSCTT------EEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTC-
T ss_pred ccceEEcCCC------CEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCC-
Confidence 6666 8999999999 999999988444444556889999999999999 999999999999999965
Q ss_pred ccCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
++ .++..+.+ |...|+++.| +++.+|++++.||.|++|++...
T Consensus 323 -------~~-------~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 323 -------PE-------CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp -------TT-------SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred -------Cc-------CchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 22 22356666 6678888855 57889999999999999999763
No 60
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.96 E-value=2.7e-26 Score=236.72 Aligned_cols=255 Identities=14% Similarity=0.114 Sum_probs=194.9
Q ss_pred EEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe-------------ccCC-----
Q 008363 93 VLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY-------------LSSM----- 153 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~-------------~~~~----- 153 (568)
....+|.+ .|.+++|+| ++ .+||+|+.||.|+|||+.++.....+. +|..
T Consensus 37 ~~~~~h~~-~v~~~~~s~~~~----------~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 105 (408)
T 4a11_B 37 DVERIHGG-GINTLDIEPVEG----------RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV 105 (408)
T ss_dssp EECCCCSS-CEEEEEECTTTC----------CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred eeeeccCC-cEEEEEEecCCC----------CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence 34467888 455999999 88 899999999999999999865544432 1221
Q ss_pred ----------ccCCCCceEEEeecceec-ccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 154 ----------KEGTDPRFVKLEPVFRCS-MLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 154 ----------~~~~~~~~v~~~~~~~~~-~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
+.++.++.+++|+..... .....+...+ .++.|++.. ++.+|++|+.||.|++||+.++ .+
T Consensus 106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~~ 178 (408)
T 4a11_B 106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETV-YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG------SC 178 (408)
T ss_dssp EECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCE-EEEEECSSCSSCCEEEEEESSSSEEEEESSSS------CC
T ss_pred EEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCce-eeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc------ce
Confidence 456678899999886521 1122366677 899998432 4559999999999999999876 77
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee---------------CCCCCCeEEEEE
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI---------------HPAPKFIYGLDW 285 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~---------------~~h~~~i~~l~~ 285 (568)
+..+.+|...|.+++|+|++. .+|++++.|+ |++||++....++..+ ..|...|++++|
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~-----~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYD-----YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCT-----TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred eeeecCCCCcEEEEEECCCCC-----cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEE
Confidence 788999999999999999982 4799999999 9999999875455444 578899999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC---------c----------------------cCccccceEEEecC
Q 008363 286 LPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP---------F----------------------AGTKQQGLHLVNCS 334 (568)
Q Consensus 286 sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~---------~----------------------~~~~~~~l~~~~~h 334 (568)
+|++++|++++.||.|++||++.........+.. + .......+..+.+|
T Consensus 254 ~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 333 (408)
T 4a11_B 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH 333 (408)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred cCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence 9999999999999999999997643211000000 0 00112446678899
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
...|++++|+|++.+|++++.||.|++|++.+.+..
T Consensus 334 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~ 369 (408)
T 4a11_B 334 YKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPV 369 (408)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEECC----
T ss_pred CCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCcc
Confidence 999999999999999999999999999999876543
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.96 E-value=1e-26 Score=237.99 Aligned_cols=265 Identities=9% Similarity=0.024 Sum_probs=197.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCC-------cEEEEECCCCcee--------e--EEeccCC-----------
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-------SLEVWEVPLLRTM--------K--AIYLSSM----------- 153 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-------~V~iwd~~~~~~~--------~--~l~~~~~----------- 153 (568)
+|++++|+|++ .+|++|+.+. .|+||++...... . .+..+..
T Consensus 16 PV~sv~fs~dg----------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~ 85 (365)
T 4h5i_A 16 PAYGAKFLNND----------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI 85 (365)
T ss_dssp CEEEEEEEETT----------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE
T ss_pred CEEEEEEeCCC----------cEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE
Confidence 68899999999 8999998654 4999998763211 1 1111111
Q ss_pred ------------ccCCCCceEEEeecceec---------c--cccCCcCccceEEEEccCCCCCEEEEEe--CCCeEEEE
Q 008363 154 ------------KEGTDPRFVKLEPVFRCS---------M--LKCGGTQSIPLTMEWSTSPPHDYLLAGC--HDGTVALW 208 (568)
Q Consensus 154 ------------~~~~~~~~v~~~~~~~~~---------~--~~~~h~~~V~~~v~~s~~~~g~~l~sgs--~Dg~I~iw 208 (568)
..++.+..+++|...... . ....+...+ .+++|+ |||++|++|+ .|++|+||
T Consensus 86 ~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~fS--pDg~~la~as~~~d~~i~iw 162 (365)
T 4h5i_A 86 ILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT-KLVYIS--REGTVAAIASSKVPAIMRII 162 (365)
T ss_dssp EEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE-EEEEEC--TTSSCEEEEESCSSCEEEEE
T ss_pred EEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE-EEEEEc--CCCCEEEEEECCCCCEEEEe
Confidence 235567778887654310 0 112334456 789999 8999876554 78999999
Q ss_pred EccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce-eeeCCCCCCeEEEEEcC
Q 008363 209 KFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL-WDIHPAPKFIYGLDWLP 287 (568)
Q Consensus 209 d~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp 287 (568)
|+.+. .++..+. |...|.+|+|+|++ .+|++++.+++++|+..++.... .....|...|.+++|+|
T Consensus 163 d~~~~------~~~~~~~-~~~~V~~v~fspdg------~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp 229 (365)
T 4h5i_A 163 DPSDL------TEKFEIE-TRGEVKDLHFSTDG------KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA 229 (365)
T ss_dssp ETTTT------EEEEEEE-CSSCCCEEEECTTS------SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE
T ss_pred ECCCC------cEEEEeC-CCCceEEEEEccCC------ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC
Confidence 99876 7777774 77889999999999 89999998888888877663332 34557888999999999
Q ss_pred CCCEEEEEeCCC----cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 288 DPGCVILSFDDG----AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 288 ~~~~l~s~~~dg----~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
++.++++++.|+ .+++|++.... .. ......+.+|...|++++|+|+|++||+|+.|++|+|||
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~--------~~----~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd 297 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGN--------TS----VLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVK 297 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTE--------EE----EEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCCEEEEEecCCcceeEEeecccccce--------ec----ceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEE
Confidence 999999998877 68888885421 10 022356788999999999999999999999999999999
Q ss_pred cCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCCCc
Q 008363 364 LTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNTPV 404 (568)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~ 404 (568)
+.+++........-...+.+.++++++..|+.++....+.+
T Consensus 298 ~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrv 338 (365)
T 4h5i_A 298 LKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHI 338 (365)
T ss_dssp TTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred CCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 99988765532222334667789999999999887666643
No 62
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.95 E-value=2.6e-26 Score=259.32 Aligned_cols=258 Identities=15% Similarity=0.213 Sum_probs=214.9
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccCC
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEGT 157 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~~ 157 (568)
...+.+|.+. |.+++|+|++ .+||+|+.||.|+|||+.++..+..+..|.. +.++
T Consensus 6 ~~~~~~h~~~-v~~i~~sp~~----------~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 6 KKTFSNRSDR-VKGIDFHPTE----------PWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp EEEEEEECSC-EEEEEECSSS----------SEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred ceeeecCCCc-eEEEEECCCC----------CEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 4456789984 5599999999 7999999999999999999998888887665 5567
Q ss_pred CCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEE
Q 008363 158 DPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAV 235 (568)
Q Consensus 158 ~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v 235 (568)
.++.+.+|+..+ ....+.+|...| ++++|+ |++.+|++|+.||+|++||+.++ ......+.+|...|.++
T Consensus 75 ~dg~i~vw~~~~~~~~~~~~~~~~~v-~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~-----~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 75 DDFRIRVFNYNTGEKVVDFEAHPDYI-RSIAVH--PTKPYVLSGSDDLTVKLWNWENN-----WALEQTFEGHEHFVMCV 146 (814)
T ss_dssp TTSEEEEEETTTCCEEEEEECCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEEGGGT-----SEEEEEEECCSSCEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCCE-EEEEEe--CCCCEEEEEcCCCEEEEEECCCC-----ceEEEEEcCCCCcEEEE
Confidence 889999999765 445667899999 999999 88999999999999999999864 25677888999999999
Q ss_pred EEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEccccc
Q 008363 236 SWAP-AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 236 ~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
+|+| ++ .+|++++.|+ |++||+.+. .+...+. .+...+.+++|+| ++.+|++++.||.|++||++.
T Consensus 147 ~~~p~~~------~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~-- 217 (814)
T 3mkq_A 147 AFNPKDP------STFASGCLDRTVKVWSLGQS-TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT-- 217 (814)
T ss_dssp EEETTEE------EEEEEEETTSEEEEEETTCS-SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT--
T ss_pred EEEcCCC------CEEEEEeCCCeEEEEECCCC-cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC--
Confidence 9999 66 8999999999 999999877 4444444 4458899999999 999999999999999999943
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
+ ..+..+.+|...|.+++|+|++.+|++++.||.|++||+.++......... .....+.++++++
T Consensus 218 ------~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~ 282 (814)
T 3mkq_A 218 ------K--------SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVG-LERSWCIATHPTG 282 (814)
T ss_dssp ------T--------EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCS-SSSEEEEEECTTC
T ss_pred ------C--------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecC-CCcEEEEEEccCC
Confidence 4 334688899999999999999999999999999999999987665543322 2234455666766
Q ss_pred Cc
Q 008363 391 SA 392 (568)
Q Consensus 391 ~~ 392 (568)
..
T Consensus 283 ~~ 284 (814)
T 3mkq_A 283 RK 284 (814)
T ss_dssp GG
T ss_pred Cc
Confidence 53
No 63
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=1.4e-26 Score=257.29 Aligned_cols=241 Identities=15% Similarity=0.198 Sum_probs=193.7
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..+.+|.+ .|.+++|+|++ .+|++|+.||+|+|||+.++.++..+
T Consensus 424 ~~~~~h~~-~v~~v~~s~~g----------~~l~sgs~Dg~v~vwd~~~~~~~~~~------------------------ 468 (694)
T 3dm0_A 424 RRLTGHSH-FVEDVVLSSDG----------QFALSGSWDGELRLWDLAAGVSTRRF------------------------ 468 (694)
T ss_dssp EEEECCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEEE------------------------
T ss_pred ceecCCCC-cEEEEEECCCC----------CEEEEEeCCCcEEEEECCCCcceeEE------------------------
Confidence 44678998 55599999999 89999999999999999998887776
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE---eeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC---FSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.+|...| ++++|+ |++.+|++|+.||+|+|||+... ..... ..+|...|.+++|+|++ ...+
T Consensus 469 --~~h~~~v-~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~------~~~~~~~~~~~h~~~v~~~~~~~~~----~~~~ 533 (694)
T 3dm0_A 469 --VGHTKDV-LSVAFS--LDNRQIVSASRDRTIKLWNTLGE------CKYTISEGGEGHRDWVSCVRFSPNT----LQPT 533 (694)
T ss_dssp --ECCSSCE-EEEEEC--TTSSCEEEEETTSCEEEECTTSC------EEEEECSSTTSCSSCEEEEEECSCS----SSCE
T ss_pred --eCCCCCE-EEEEEe--CCCCEEEEEeCCCEEEEEECCCC------cceeeccCCCCCCCcEEEEEEeCCC----Ccce
Confidence 7899999 999999 88999999999999999998643 22222 24689999999999986 2358
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
|++++.|+ |++||+++. .....+.+|.+.|++++|+|++++|++++.||+|++||++. ++. +
T Consensus 534 l~s~s~d~~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~--------~~~--------~ 596 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNC-KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE--------GKK--------L 596 (694)
T ss_dssp EEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT--------TEE--------E
T ss_pred EEEEeCCCeEEEEECCCC-cEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC--------Cce--------E
Confidence 99999999 999999977 77788999999999999999999999999999999999954 433 2
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCC------------------CcceeeeecccCCC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRN------------------RPMHFLCGSVTEDE 390 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~------------------~~~~~~~~s~~~~~ 390 (568)
..+. +...|.+++|+|++.+|++++ |+.|+|||+.++......... ......+..+++++
T Consensus 597 ~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg 674 (694)
T 3dm0_A 597 YSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG 674 (694)
T ss_dssp ECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS
T ss_pred EEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC
Confidence 3443 456899999999988887766 667999999987654432110 01123445678888
Q ss_pred CceEEcccCCCC
Q 008363 391 SAITVNTPLDNT 402 (568)
Q Consensus 391 ~~i~~~~~~~~~ 402 (568)
..|++++....+
T Consensus 675 ~~l~sgs~Dg~i 686 (694)
T 3dm0_A 675 STLFSGYTDGVI 686 (694)
T ss_dssp SEEEEEETTSEE
T ss_pred CEEEEEcCCCeE
Confidence 888887665544
No 64
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.95 E-value=8.6e-27 Score=241.42 Aligned_cols=213 Identities=16% Similarity=0.248 Sum_probs=174.5
Q ss_pred eeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
+.+|.+ .|.+++|+| ++ .+|++|+.||.|+|||+.++.....+ ......
T Consensus 77 ~~~h~~-~V~~~~~~p~~~----------~~l~s~s~dg~v~vw~~~~~~~~~~~-------------------~~~~~~ 126 (402)
T 2aq5_A 77 VCGHTA-PVLDIAWCPHND----------NVIASGSEDCTVMVWEIPDGGLVLPL-------------------REPVIT 126 (402)
T ss_dssp BCCCSS-CEEEEEECTTCT----------TEEEEEETTSEEEEEECCTTCCSSCB-------------------CSCSEE
T ss_pred EecCCC-CEEEEEeCCCCC----------CEEEEEeCCCeEEEEEccCCCCcccc-------------------CCceEE
Confidence 467888 555999999 77 79999999999999999986322110 001112
Q ss_pred ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
+.+|...| .+++|+ |++ .+|++|+.||+|++||+.++ .++..+ .+|...|.+++|+|++ .+|
T Consensus 127 ~~~h~~~v-~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~------~~l 191 (402)
T 2aq5_A 127 LEGHTKRV-GIVAWH--PTAQNVLLSAGCDNVILVWDVGTG------AAVLTLGPDVHPDTIYSVDWSRDG------ALI 191 (402)
T ss_dssp EECCSSCE-EEEEEC--SSBTTEEEEEETTSCEEEEETTTT------EEEEEECTTTCCSCEEEEEECTTS------SCE
T ss_pred ecCCCCeE-EEEEEC--cCCCCEEEEEcCCCEEEEEECCCC------CccEEEecCCCCCceEEEEECCCC------CEE
Confidence 27899999 999999 776 69999999999999999976 788888 7899999999999998 899
Q ss_pred EEEcCCC-EEEEECCCCCcceeee-CCCCCC-eEEEEEcCCCCEEEEE---eCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDI-HPAPKF-IYGLDWLPDPGCVILS---FDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~-~~h~~~-i~~l~~sp~~~~l~s~---~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
++++.|+ |++||++++ ..+..+ ..|.+. +.++.|+|++.+|++| +.|+.|++||++... .
T Consensus 192 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~--------~----- 257 (402)
T 2aq5_A 192 CTSCRDKRVRVIEPRKG-TVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE--------E----- 257 (402)
T ss_dssp EEEETTSEEEEEETTTT-EEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS--------S-----
T ss_pred EEEecCCcEEEEeCCCC-ceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc--------C-----
Confidence 9999999 999999987 777777 688776 8999999999999998 689999999996522 1
Q ss_pred ccceEEE-ecCCCCEEEEEEecCCCEEEE-EeCCCeEEEEEcCCCe
Q 008363 325 QQGLHLV-NCSSFAIWSVQVSRLTGMVAY-CSADGTVHRFQLTAKA 368 (568)
Q Consensus 325 ~~~l~~~-~~h~~~V~~l~~sp~~~~l~s-~s~Dg~v~iwd~~~~~ 368 (568)
++... ..|...|.+++|+|++.+|++ ++.||.|++|++.++.
T Consensus 258 --~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~ 301 (402)
T 2aq5_A 258 --PLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA 301 (402)
T ss_dssp --CSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred --CceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence 11222 257788999999999998865 5579999999998765
No 65
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.1e-27 Score=261.31 Aligned_cols=251 Identities=15% Similarity=0.184 Sum_probs=198.9
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecceec
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
...+|.+ .|++++|+|++ .+|++|+.||.|+|||+.. +..+..+
T Consensus 4 ~l~gH~~-~V~~l~~s~dg----------~~latg~~dg~I~vwd~~~~~~~~~~~l----------------------- 49 (753)
T 3jro_A 4 IANAHNE-LIHDAVLDYYG----------KRLATCSSDKTIKIFEVEGETHKLIDTL----------------------- 49 (753)
T ss_dssp ----CCC-CEEEECCCSSS----------CCEEEEETTTEEEEEEEETTEEEEEEEE-----------------------
T ss_pred ecccCcc-eeEEEEECCCC----------CeEEEEECCCcEEEEecCCCCCccceec-----------------------
Confidence 3568999 55599999999 7999999999999999984 3444443
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC--CCCCCCCcE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA--ESDSDSANV 249 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~~~~~~ 249 (568)
.+|...| ++++|++..++.+|++|+.||+|++||+.++. ...+..+.+|...|.+++|+|+ + .+
T Consensus 50 ---~~h~~~V-~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~----~~~~~~~~~h~~~V~~v~~sp~~~~------~~ 115 (753)
T 3jro_A 50 ---TGHEGPV-WRVDWAHPKFGTILASCSYDGKVLIWKEENGR----WSQIAVHAVHSASVNSVQWAPHEYG------PL 115 (753)
T ss_dssp ---CCCSSCE-EEEEECCTTSCSEEEEEETTSCEEEEEEETTE----EEEEEEECCCSSCEEEEEECCGGGC------SE
T ss_pred ---cCCcCce-EEEEecCCCCCCEEEEEeCCCeEEEEECCCCc----ccccccccCCCCCeEEEEECCCCCC------CE
Confidence 7899999 99999944338999999999999999998761 1377788899999999999999 7 89
Q ss_pred EEEEcCCC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcC-------------CCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 250 ILTAGHGG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLP-------------DPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp-------------~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
|++|+.|+ |++||+++.. .....+.+|...|++++|+| ++.+|++|+.||.|++||++.
T Consensus 116 l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~------ 189 (753)
T 3jro_A 116 LLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS------ 189 (753)
T ss_dssp EEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEET------
T ss_pred EEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccC------
Confidence 99999999 9999998763 33456678999999999999 589999999999999999965
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecC---CCEEEEEeCCCeEEEEEcCCCeeec----cCCCCCcceeeeeccc
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL---TGMVAYCSADGTVHRFQLTAKAVEK----DHSRNRPMHFLCGSVT 387 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~---~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~~~~~~~~s~~ 387 (568)
+... ...+..+.+|...|++++|+|+ +.+|++++.||.|++||+.++.... ...........+.+++
T Consensus 190 --~~~~----~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 190 --DAQT----YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS 263 (753)
T ss_dssp --TTTE----EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC
T ss_pred --Cccc----ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEc
Confidence 2111 1345678899999999999999 8999999999999999998753111 0011122234456788
Q ss_pred CCCCceEEcccCCCCCc
Q 008363 388 EDESAITVNTPLDNTPV 404 (568)
Q Consensus 388 ~~~~~i~~~~~~~~~~~ 404 (568)
+++..+++++..+.+.+
T Consensus 264 pdg~~l~s~s~Dg~I~v 280 (753)
T 3jro_A 264 LSGNVLALSGGDNKVTL 280 (753)
T ss_dssp TTTCCEEEECSSSCEEC
T ss_pred CCCCEEEEEcCCCEEEE
Confidence 89988888776655543
No 66
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=3.3e-27 Score=239.84 Aligned_cols=252 Identities=16% Similarity=0.218 Sum_probs=195.5
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
|.+ .+.+++|+|++. ..-.+|++|+.||.|+|||+.+++.+..+ .+|
T Consensus 68 ~~~-~v~~~~~~~~~~------~~~~~l~~~~~dg~i~v~d~~~~~~~~~~--------------------------~~~ 114 (366)
T 3k26_A 68 ADE-NFYTCAWTYDSN------TSHPLLAVAGSRGIIRIINPITMQCIKHY--------------------------VGH 114 (366)
T ss_dssp TTC-CEEEEEEEECTT------TCCEEEEEEETTCEEEEECTTTCCEEEEE--------------------------ESC
T ss_pred CCC-cEEEEEeccCCC------CCCCEEEEecCCCEEEEEEchhceEeeee--------------------------cCC
Confidence 555 566999999931 00069999999999999999998887776 678
Q ss_pred cCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---eCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 178 TQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---SADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 178 ~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
...| .+++|+ | ++.+|++|+.||+|++||+.++ ..+..+ .+|...|.+++|+|++ .+|+++
T Consensus 115 ~~~i-~~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~ 179 (366)
T 3k26_A 115 GNAI-NELKFH--PRDPNLLLSVSKDHALRLWNIQTD------TLVAIFGGVEGHRDEVLSADYDLLG------EKIMSC 179 (366)
T ss_dssp CSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTTT------EEEEEECSTTSCSSCEEEEEECTTS------SEEEEE
T ss_pred CCcE-EEEEEC--CCCCCEEEEEeCCCeEEEEEeecC------eEEEEecccccccCceeEEEECCCC------CEEEEe
Confidence 8999 999999 6 7889999999999999999876 777777 6899999999999998 899999
Q ss_pred cCCC-EEEEECCCCCccee----------------------------eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363 254 GHGG-LKFWDIRDPFRPLW----------------------------DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 254 s~d~-v~lwD~~~~~~~~~----------------------------~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lw 304 (568)
+.|+ |++||+++. ..+. ....|...|.+++|+ +.+|++++.|+.|++|
T Consensus 180 ~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 180 GMDHSLKLWRINSK-RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCW 256 (366)
T ss_dssp ETTSCEEEEESCSH-HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred cCCCCEEEEECCCC-ccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEE
Confidence 9998 999999875 3322 223489999999999 7799999999999999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCeeec----cCCCCC-
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKAVEK----DHSRNR- 377 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~~~~----~~~~~~- 377 (568)
|++........ ..........+..+.+|...|++++|+|+ +.+|++++.||.|++||+.++.... ....+.
T Consensus 257 d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 334 (366)
T 3k26_A 257 KPGKMEDDIDK--IKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKC 334 (366)
T ss_dssp EESSTTCCGGG--CCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTC
T ss_pred eCCCccccccc--cccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEccccc
Confidence 99654311000 00000111346788899999999999999 9999999999999999998764322 112221
Q ss_pred cceeeeecccCCCCceEEcccCCCC
Q 008363 378 PMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 378 ~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
...+.+.++++++..|+.++....+
T Consensus 335 ~~~v~~~~~s~~~~~l~s~~~dg~i 359 (366)
T 3k26_A 335 GAAIRQTSFSRDSSILIAVCDDASI 359 (366)
T ss_dssp CSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CCceEEEEeCCCCCeEEEEeCCCEE
Confidence 3445666788888888776654433
No 67
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=5.9e-26 Score=230.55 Aligned_cols=242 Identities=17% Similarity=0.291 Sum_probs=188.2
Q ss_pred eEEEeeccCCceeeEEEEccCC--CCcccccCcccEEEEEeCCCcEEEEECCC-Ccee-eEEeccCCccCCCCceEEEee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYN--AVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTM-KAIYLSSMKEGTDPRFVKLEP 166 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~--~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~-~~l~~~~~~~~~~~~~v~~~~ 166 (568)
.+..+.+|.+ .|.+++|+|++ + .+|++|+.||.|+|||+.+ +..+ ..+
T Consensus 31 ~~~~~~~h~~-~v~~~~~~~~~~~g---------~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------------ 82 (368)
T 3mmy_A 31 DIEVTSSPDD-SIGCLSFSPPTLPG---------NFLIAGSWANDVRCWEVQDSGQTIPKAQ------------------ 82 (368)
T ss_dssp CEECSSCCSS-CEEEEEECCTTSSS---------EEEEEEETTSEEEEEEECTTSCEEEEEE------------------
T ss_pred eeEeccCCCC-ceEEEEEcCCCCCc---------eEEEEECCCCcEEEEEcCCCCceeEEEe------------------
Confidence 3445678888 55599999993 2 7999999999999999997 4444 333
Q ss_pred cceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE--ccCCCCC
Q 008363 167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW--APAESDS 244 (568)
Q Consensus 167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~--~p~~~~~ 244 (568)
.+|...| ++++|+ |++.+|++|+.||.|++||+.+. ..+. +..|...|.+++| ++++
T Consensus 83 --------~~h~~~v-~~~~~~--~~~~~l~s~~~dg~v~iwd~~~~------~~~~-~~~~~~~v~~~~~~~~~~~--- 141 (368)
T 3mmy_A 83 --------QMHTGPV-LDVCWS--DDGSKVFTASCDKTAKMWDLSSN------QAIQ-IAQHDAPVKTIHWIKAPNY--- 141 (368)
T ss_dssp --------EECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEE-EEECSSCEEEEEEEECSSC---
T ss_pred --------ccccCCE-EEEEEC--cCCCEEEEEcCCCcEEEEEcCCC------Ccee-eccccCceEEEEEEeCCCC---
Confidence 6788999 999999 78999999999999999999866 5444 5579999999999 8887
Q ss_pred CCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC-----------------------------------------CCCeEE
Q 008363 245 DSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA-----------------------------------------PKFIYG 282 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h-----------------------------------------~~~i~~ 282 (568)
.+|++++.|+ |++||+++. .++..+..+ ...+.+
T Consensus 142 ---~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (368)
T 3mmy_A 142 ---SCVMTGSWDKTLKFWDTRSS-NPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRC 217 (368)
T ss_dssp ---EEEEEEETTSEEEEECSSCS-SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEE
T ss_pred ---CEEEEccCCCcEEEEECCCC-cEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCce
Confidence 8999999999 999999977 444443322 233455
Q ss_pred EEEcCCCCE----EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC------------CEEEEEEecC
Q 008363 283 LDWLPDPGC----VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF------------AIWSVQVSRL 346 (568)
Q Consensus 283 l~~sp~~~~----l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~------------~V~~l~~sp~ 346 (568)
+++.++... +++++.||.|++||++... . ...+..+.+|.. .|++++|+|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 284 (368)
T 3mmy_A 218 VAIFKDKQNKPTGFALGSIEGRVAIHYINPPN--------P-----AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV 284 (368)
T ss_dssp EEEEECTTSCEEEEEEEETTSEEEEEESSCSC--------H-----HHHSEEEECSEEC----CCCEEECCEEEEEECTT
T ss_pred EEEcccCCCCCCeEEEecCCCcEEEEecCCCC--------c-----cccceeeeeeecccccccccccccceEEEEEecC
Confidence 555555544 8899999999999996421 1 023456777765 7999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 347 TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 347 ~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
+.+|++++.||.|++||+.++........+. ..+.+.++++++..|++++..
T Consensus 285 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 285 HGTLATVGSDGRFSFWDKDARTKLKTSEQLD-QPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp TCCEEEEETTSCEEEEETTTTEEEEECCCCS-SCEEEEEECTTSSCEEEEECC
T ss_pred CCEEEEEccCCeEEEEECCCCcEEEEecCCC-CCceEEEECCCCCeEEEEecc
Confidence 9999999999999999999887766544332 345566889999998887643
No 68
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.1e-25 Score=228.69 Aligned_cols=235 Identities=14% Similarity=0.136 Sum_probs=193.5
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC-------------ccCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM-------------KEGT 157 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~-------------~~~~ 157 (568)
.+..+.+|.+ .|.+++|+|++ .+|++++.||.|+|||+.+++++..+..... +.+.
T Consensus 66 ~~~~~~~h~~-~v~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 134 (369)
T 3zwl_B 66 RLGTLDGHTG-TIWSIDVDCFT----------KYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAIL 134 (369)
T ss_dssp EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred hhhhhhhcCC-cEEEEEEcCCC----------CEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEec
Confidence 3445567888 55599999999 7999999999999999999888877763322 2223
Q ss_pred CC-----ceEEEeecceec-------------ccccCCcC--ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC
Q 008363 158 DP-----RFVKLEPVFRCS-------------MLKCGGTQ--SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI 217 (568)
Q Consensus 158 ~~-----~~v~~~~~~~~~-------------~~~~~h~~--~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~ 217 (568)
.+ ..+.+|+..... .....|.. .+ .+++|+ +++.+|++|+.||.|++||+...
T Consensus 135 ~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~---- 207 (369)
T 3zwl_B 135 DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA-TVAGWS--TKGKYIIAGHKDGKISKYDVSNN---- 207 (369)
T ss_dssp CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE-EEEEEC--GGGCEEEEEETTSEEEEEETTTT----
T ss_pred CCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce-eEEEEc--CCCCEEEEEcCCCEEEEEECCCC----
Confidence 33 778888775421 12233444 77 999999 78899999999999999999862
Q ss_pred CCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 218 DSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 218 ~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
...+..+..|...|.+++|+|++ .+|++++.|+ |++||+++. ..+..+. +...+.+++|+|+++++++++
T Consensus 208 -~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 278 (369)
T 3zwl_B 208 -YEYVDSIDLHEKSISDMQFSPDL------TYFITSSRDTNSFLVDVSTL-QVLKKYE-TDCPLNTAVITPLKEFIILGG 278 (369)
T ss_dssp -TEEEEEEECCSSCEEEEEECTTS------SEEEEEETTSEEEEEETTTC-CEEEEEE-CSSCEEEEEECSSSSEEEEEE
T ss_pred -cEeEEEEecCCCceeEEEECCCC------CEEEEecCCceEEEEECCCC-ceeeeec-CCCCceeEEecCCCceEEEee
Confidence 27788899999999999999998 8999999999 999999987 6666664 678899999999999999999
Q ss_pred CCC--------------cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 297 DDG--------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 297 ~dg--------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
.++ .|++||+.. +++ +..+.+|...|++++|+|++.+|++++.||.|++|
T Consensus 279 ~~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~--------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 279 GQEAKDVTTTSANEGKFEARFYHKIF--------EEE--------IGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp CCC-------------CEEEEEETTT--------CCE--------EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCceEEEEecCCCcceeEEEecCC--------Ccc--------hhheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 988 899999843 433 46888999999999999999999999999999999
Q ss_pred EcCCCe
Q 008363 363 QLTAKA 368 (568)
Q Consensus 363 d~~~~~ 368 (568)
++..+.
T Consensus 343 ~~~~~~ 348 (369)
T 3zwl_B 343 HFEKSY 348 (369)
T ss_dssp EECHHH
T ss_pred ECcccc
Confidence 997654
No 69
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.95 E-value=5.9e-26 Score=235.30 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=198.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------------
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------------ 153 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------------ 153 (568)
+....+|.. .+.+++|+|++ .+|++++.||.|++||+.+++.+..+..+..
T Consensus 142 ~~~~~~~~~-~v~~~~~~~~~----------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (425)
T 1r5m_A 142 LNVLNFHRA-PIVSVKWNKDG----------THIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV 210 (425)
T ss_dssp EEEECCCCS-CEEEEEECTTS----------SEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS
T ss_pred eeeccCCCc-cEEEEEECCCC----------CEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee
Confidence 444556877 55699999999 7999999999999999999887776654332
Q ss_pred ----------ccCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCce
Q 008363 154 ----------KEGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRP 221 (568)
Q Consensus 154 ----------~~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~ 221 (568)
+.+..++.+.+|+... ......+|...| .+++|+ |++.+|++++.||.|++||+... .+
T Consensus 211 ~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~------~~ 281 (425)
T 1r5m_A 211 DVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI-SVLEFN--DTNKLLLSASDDGTLRIWHGGNG------NS 281 (425)
T ss_dssp CCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCE-EEEEEE--TTTTEEEEEETTSCEEEECSSSB------SC
T ss_pred EEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCce-EEEEEC--CCCCEEEEEcCCCEEEEEECCCC------cc
Confidence 2345567788888765 334456899999 999999 88899999999999999999876 77
Q ss_pred eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCc
Q 008363 222 LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 222 ~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~ 300 (568)
+..+.+|...|.+++|+|++ +|++++.|+ |++||+++. ..+..+..|...|.+++|+|++++|++++.||.
T Consensus 282 ~~~~~~~~~~i~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 282 QNCFYGHSQSIVSASWVGDD-------KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp SEEECCCSSCEEEEEEETTT-------EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ceEecCCCccEEEEEECCCC-------EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 88888999999999999985 889999998 999999987 788888899999999999999999999999999
Q ss_pred EEEEEccccccCCC-CC---CCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 301 MRIVSLLKAAYDVP-AT---GKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 301 I~lwd~~~~~~~~~-~~---g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|++||++....... .. ...+.......+..+.+|.. .|++++|+|++.+|++++.||.|++|++.
T Consensus 354 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 354 VNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 99999965321000 00 00000000125678889976 99999999999999999999999999984
No 70
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=232.29 Aligned_cols=249 Identities=14% Similarity=0.112 Sum_probs=189.2
Q ss_pred EEeeccCCceeeEEEEccC---CCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccCC---------------
Q 008363 93 VLCLAHNGKVAWDVKWKPY---NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSSM--------------- 153 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~---~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~~--------------- 153 (568)
....+|.. .|.+++|+|+ + .+|++|+.||.|++||+.+++ .+..+.+|..
T Consensus 59 ~~~~~~~~-~v~~~~~~~~~~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~ 127 (357)
T 3i2n_A 59 LREIEKAK-PIKCGTFGATSLQQ----------RYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGE 127 (357)
T ss_dssp EEEEEESS-CEEEEECTTCCTTT----------CCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-
T ss_pred eeeecccC-cEEEEEEcCCCCCC----------ceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCC
Confidence 34457887 4559999998 5 799999999999999999876 6666655543
Q ss_pred -----ccCCCCceEEEeeccee---cccccCCc----CccceEEEEcc--CCCCCEEEEEeCCCeEEEEEccCCCCCCCC
Q 008363 154 -----KEGTDPRFVKLEPVFRC---SMLKCGGT----QSIPLTMEWST--SPPHDYLLAGCHDGTVALWKFVASDSSIDS 219 (568)
Q Consensus 154 -----~~~~~~~~v~~~~~~~~---~~~~~~h~----~~V~~~v~~s~--~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~ 219 (568)
+.++.++.+++|+.... ......|. ..+ .+++|++ ++++.+|++|+.||.|++||+++.
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------ 200 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC-WTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNM------ 200 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE-EEEEEECCCC-CCCEEEEEETTSEEEEEETTTT------
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce-EEEEEEeccCCCCCEEEEEccCCeEEEEECccC------
Confidence 34567888999987652 22333333 366 8888421 278999999999999999999876
Q ss_pred ceeEEeeCCCCCeeEEEEcc---CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeee-----CCCCCCeEEEEEcCCCC
Q 008363 220 RPLLCFSADTLPIRAVSWAP---AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDI-----HPAPKFIYGLDWLPDPG 290 (568)
Q Consensus 220 ~~~~~~~~h~~~V~~v~~~p---~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~ 290 (568)
... ....|...|.+++|+| ++ .+|++++.|+ |++||+++. .++..+ .+|...|++++|+|+++
T Consensus 201 ~~~-~~~~~~~~v~~~~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 201 ALR-WETNIKNGVCSLEFDRKDISM------NKLVATSLEGKFHVFDMRTQ-HPTKGFASVSEKAHKSTVWQVRHLPQNR 272 (357)
T ss_dssp EEE-EEEECSSCEEEEEESCSSSSC------CEEEEEESTTEEEEEEEEEE-ETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred cee-eecCCCCceEEEEcCCCCCCC------CEEEEECCCCeEEEEeCcCC-CcccceeeeccCCCcCCEEEEEECCCCC
Confidence 443 3457899999999999 77 8999999999 999999876 444333 38999999999999998
Q ss_pred -EEEEEeCCCcEEEEEccccccCC--CCCCCCcc-CccccceEEEecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEEcC
Q 008363 291 -CVILSFDDGAMRIVSLLKAAYDV--PATGKPFA-GTKQQGLHLVNCSSFAIWSVQVSRLTGMVA-YCSADGTVHRFQLT 365 (568)
Q Consensus 291 -~l~s~~~dg~I~lwd~~~~~~~~--~~~g~~~~-~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~ 365 (568)
+|++++.||.|++||++...... ...|.... ......+..+.+|...|++++|+|++.+|+ +++.||.|++||+.
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 89999999999999997533110 00111100 001145678899999999999999998888 89999999999996
Q ss_pred CC
Q 008363 366 AK 367 (568)
Q Consensus 366 ~~ 367 (568)
+.
T Consensus 353 ~~ 354 (357)
T 3i2n_A 353 KL 354 (357)
T ss_dssp C-
T ss_pred Cc
Confidence 53
No 71
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.6e-26 Score=233.28 Aligned_cols=214 Identities=18% Similarity=0.314 Sum_probs=176.0
Q ss_pred EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363 92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
+..+.+|.+ .|++++|+|+ + .+|++|+.||.|+|||+.+++ .+..+
T Consensus 48 ~~~~~~h~~-~v~~~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~~~~~~~~------------------- 97 (379)
T 3jrp_A 48 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVLIWKEENGRWSQIAVH------------------- 97 (379)
T ss_dssp EEEECCCSS-CEEEEEECCGGGC----------SEEEEEETTSCEEEEEEETTEEEEEEEE-------------------
T ss_pred eeEecCCCC-cEEEEEeCCCCCC----------CEEEEeccCCEEEEEEcCCCceeEeeee-------------------
Confidence 334567888 5569999987 6 799999999999999999875 33333
Q ss_pred ceecccccCCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc------
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP------ 239 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p------ 239 (568)
.+|...| .+++|+ |+ +.+|++|+.||.|++||+..... .....+.+|...|.+++|+|
T Consensus 98 -------~~~~~~v-~~~~~~--~~~~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 98 -------AVHSASV-NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp -------CCCSSCE-EEEEEC--CGGGCSEEEEEETTSEEEEEECCTTSC----CCEEEEECCTTCEEEEEECCCC----
T ss_pred -------cCCCcce-EEEEeC--CCCCCCEEEEecCCCcEEEEecCCCCc----eeeEEecCCCCceEEEEEcCcccccc
Confidence 6788888 999999 66 88999999999999999986622 45557789999999999999
Q ss_pred -------CCCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 008363 240 -------AESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD---PGCVILSFDDGAMRIVS 305 (568)
Q Consensus 240 -------~~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd 305 (568)
++ .+|++++.|+ |++||++... ..+..+.+|...|++++|+|+ +.+|++++.||.|++||
T Consensus 164 ~~~~~~~~~------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 164 GEHNGTKES------RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp ------CTT------CEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ccccCCCCC------CEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 46 8999999999 9999998764 234677889999999999999 89999999999999999
Q ss_pred ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
++... .... ..+.....|...|++++|+|++.+|++++.||.|++|++..
T Consensus 238 ~~~~~------~~~~-----~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 238 QDNEQ------GPWK-----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ESSTT------SCCE-----EEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCCCC------ccce-----eeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 96521 0000 11122234889999999999999999999999999999964
No 72
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6e-27 Score=250.09 Aligned_cols=262 Identities=10% Similarity=0.095 Sum_probs=183.0
Q ss_pred eeccCCceeeEEEEccCCCCcc-----c-------------ccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccC
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDC-----K-------------CKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEG 156 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~-----~-------------~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~ 156 (568)
.+.+.+ .|++|+|+|+++... . ..+.+.+|++++.|++|+||++.++++....
T Consensus 129 ~~~~~~-~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~-------- 199 (524)
T 2j04_B 129 IYNVGG-LVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK-------- 199 (524)
T ss_dssp EEECCC---CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEE--------
T ss_pred EEECCC-ceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE--------
Confidence 344544 777999999862100 0 0011123455667888888888765532110
Q ss_pred CCCceEEEeecceecccccCCcCccceEEEEccC----CCCCEEEEEeCCCeEEEEEccCCCCC-----CCCceeEEeeC
Q 008363 157 TDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS----PPHDYLLAGCHDGTVALWKFVASDSS-----IDSRPLLCFSA 227 (568)
Q Consensus 157 ~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~----~~g~~l~sgs~Dg~I~iwd~~~~~~~-----~~~~~~~~~~~ 227 (568)
...+.+|.+.| .+|+|+|. +++.+||+|+.||+|+|||+...... ....+...+.+
T Consensus 200 --------------~~~l~~~~~~V-~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~ 264 (524)
T 2j04_B 200 --------------VQTIVHSFGEV-WDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL 264 (524)
T ss_dssp --------------EEEEEECCCSE-EEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred --------------EEEEEecCCcE-EEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence 00115677888 99999964 34679999999999999999765321 01134567889
Q ss_pred CCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEE--EEcCCC-CEEEEEeCCCcEEE
Q 008363 228 DTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGL--DWLPDP-GCVILSFDDGAMRI 303 (568)
Q Consensus 228 h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l--~~sp~~-~~l~s~~~dg~I~l 303 (568)
|...|++++|+++ ..|++|+.|+ |++||++++..+...+.+|...|++| +|+|++ .+|++++.|++|+|
T Consensus 265 h~~~v~sv~~s~~-------~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 265 ADSLITTFDFLSP-------TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp TTTCEEEEEESSS-------SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred CCCCEEEEEecCC-------CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 9999999999986 4899999999 99999997655667788999999999 578888 89999999999999
Q ss_pred EEccccccCCCCCCCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCccee
Q 008363 304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHF 381 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~ 381 (568)
||++. + +++..+.+|.. .|++++|+|++..|++++.|++|++||+.++........+. ..+
T Consensus 338 WD~~~--------~--------~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-~~V 400 (524)
T 2j04_B 338 FNPKD--------I--------ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-TTI 400 (524)
T ss_dssp ECGGG--------H--------HHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS-SCE
T ss_pred EECCC--------C--------CcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC-Cce
Confidence 99965 2 22345666653 58899999999999999999999999998765433222222 234
Q ss_pred eeecccCCCCceEEcccCCCCCc
Q 008363 382 LCGSVTEDESAITVNTPLDNTPV 404 (568)
Q Consensus 382 ~~~s~~~~~~~i~~~~~~~~~~~ 404 (568)
.+.++++++..|++++....+.+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~l 423 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLII 423 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEEC
T ss_pred EEEEeCCCCCeEEEEECCCEEEE
Confidence 55678899988888776665543
No 73
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.5e-27 Score=243.71 Aligned_cols=266 Identities=13% Similarity=0.181 Sum_probs=203.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEE----------eCCCcEEEEECCCCc---eeeEEeccCC--------------c
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVL----------LGNGSLEVWEVPLLR---TMKAIYLSSM--------------K 154 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~----------s~dg~V~iwd~~~~~---~~~~l~~~~~--------------~ 154 (568)
.+.+++|+|++. .+|++| +.||.|+|||+.++. .+..+. +.. +
T Consensus 14 ~v~~~~~sp~g~---------~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 14 RTATFAWSHDKI---------PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQ-VDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp ESCBCCBCSSSS---------CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCC-CSSCEEEEEECSSSSCEE
T ss_pred hcceEeeCCCCC---------CEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEe-cCCceEEEEECCCCCeEE
Confidence 455899999983 499999 899999999998864 332221 211 4
Q ss_pred cCCCCceEEEeecce------ecccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCC---CCceeEE
Q 008363 155 EGTDPRFVKLEPVFR------CSMLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSI---DSRPLLC 224 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~------~~~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~---~~~~~~~ 224 (568)
.++.++.+++|+... ....+.+|...| .+++|+ |+ +.+|++|+.||+|++||+....... ....+..
T Consensus 84 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v-~~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANNAINSMARFSNHSSSV-KTVKFN--AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp EEESSSCEEEECCSSTTSCCCEEEECCCSSSCC-CEEEEC--SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred EEccCCeEEEeecccccccccchhhccCCccce-EEEEEc--CCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 566788999998876 556677899999 999999 76 7899999999999999998763100 0012223
Q ss_pred eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC------CCCeEEEEEcCCC-CEEEEEe
Q 008363 225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA------PKFIYGLDWLPDP-GCVILSF 296 (568)
Q Consensus 225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h------~~~i~~l~~sp~~-~~l~s~~ 296 (568)
+..|...|.+++|+|++ ..+|++++.|+ |++||+++. ..+..+..| ...|++++|+|++ .+|++++
T Consensus 161 ~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 234 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSL-----AHVFASAGSSNFASIWDLKAK-KEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT 234 (416)
T ss_dssp SCCSSCCCCEEEECSSC-----TTEEEEESSSSCEEEEETTTT-EEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE
T ss_pred ccCCCCCeeEEEeCCCC-----CcEEEEEcCCCCEEEEECCCC-CcceEEeccccccccCCceEEEEECCCCCCEEEEEE
Confidence 46799999999999994 28999999999 999999987 777777665 7889999999997 6889999
Q ss_pred CCC---cEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEec-CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 297 DDG---AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVSR-LTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 297 ~dg---~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp-~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.|+ .|++||++... . ++..+. +|...|++++|+| ++.+|++++.||.|++||+.++....
T Consensus 235 ~d~~~~~i~~~d~~~~~-------~--------~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~ 299 (416)
T 2pm9_A 235 GSDNDPSILIWDLRNAN-------T--------PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS 299 (416)
T ss_dssp CCSSSCCCCEEETTSTT-------S--------CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE
T ss_pred CCCCCceEEEEeCCCCC-------C--------CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce
Confidence 998 99999996521 2 234666 8999999999999 89999999999999999998876554
Q ss_pred cCCCCCcceeeeecccCCC-CceEEcccCCCC
Q 008363 372 DHSRNRPMHFLCGSVTEDE-SAITVNTPLDNT 402 (568)
Q Consensus 372 ~~~~~~~~~~~~~s~~~~~-~~i~~~~~~~~~ 402 (568)
....+. ....+..+++++ ..+++++....+
T Consensus 300 ~~~~~~-~~v~~~~~s~~~~~~l~s~~~d~~i 330 (416)
T 2pm9_A 300 QFPARG-NWCFKTKFAPEAPDLFACASFDNKI 330 (416)
T ss_dssp EEECSS-SCCCCEEECTTCTTEEEECCSSSEE
T ss_pred eecCCC-CceEEEEECCCCCCEEEEEecCCcE
Confidence 433222 233455677777 566665544333
No 74
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.95 E-value=3e-25 Score=222.64 Aligned_cols=223 Identities=14% Similarity=0.143 Sum_probs=187.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCC--------------ccCCCC
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSM--------------KEGTDP 159 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~--------------~~~~~~ 159 (568)
..|.. .+.+++|+|++ .+|++++.||.|++||+.+++ ....+..+.. +.++.+
T Consensus 94 ~~~~~-~v~~~~~~~~~----------~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 162 (337)
T 1gxr_A 94 LNRDN-YIRSCKLLPDG----------CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD 162 (337)
T ss_dssp SCTTS-BEEEEEECTTS----------SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred cCCCC-cEEEEEEcCCC----------CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC
Confidence 36777 56699999999 799999999999999999866 4444444433 455677
Q ss_pred ceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 160 RFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 160 ~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
+.+.+|+... ....+.+|...+ .+++|+ |++.+|++++.||.|++||+.+. ..+..+ .|...+.+++|
T Consensus 163 g~v~~~d~~~~~~~~~~~~~~~~i-~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~-~~~~~v~~~~~ 232 (337)
T 1gxr_A 163 GNIAVWDLHNQTLVRQFQGHTDGA-SCIDIS--NDGTKLWTGGLDNTVRSWDLREG------RQLQQH-DFTSQIFSLGY 232 (337)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEE-ECSSCEEEEEE
T ss_pred CcEEEEeCCCCceeeeeecccCce-EEEEEC--CCCCEEEEEecCCcEEEEECCCC------ceEeee-cCCCceEEEEE
Confidence 8899998765 445567899999 999999 78999999999999999999876 666665 57888999999
Q ss_pred ccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 238 APAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
+|++ .+|++++.++ |++||+++. . ...+..|...|.+++|+|++++|++++.||.|++||+..
T Consensus 233 s~~~------~~l~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~-------- 296 (337)
T 1gxr_A 233 CPTG------EWLAVGMESSNVEVLHVNKP-D-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY-------- 296 (337)
T ss_dssp CTTS------SEEEEEETTSCEEEEETTSS-C-EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--------
T ss_pred CCCC------CEEEEEcCCCcEEEEECCCC-C-eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC--------
Confidence 9999 8999999998 999999976 3 346778999999999999999999999999999999954
Q ss_pred CCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 317 GKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
++.+ ....|...|.+++|+|++.+|++++.||.|++|++
T Consensus 297 ~~~~---------~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 297 GASI---------FQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CCEE---------EEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CeEE---------EEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 3332 33458899999999999999999999999999997
No 75
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.95 E-value=6.1e-26 Score=228.68 Aligned_cols=262 Identities=13% Similarity=0.075 Sum_probs=200.7
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCC---------------ccCC
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSM---------------KEGT 157 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~---------------~~~~ 157 (568)
.+|.+ .|++++|+|++ .+|++++.||.|+||++.++. ....+..+.. +.++
T Consensus 8 ~~h~~-~v~~~~~s~~~----------~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 76 (342)
T 1yfq_A 8 QAPKD-YISDIKIIPSK----------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT 76 (342)
T ss_dssp SCCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE
T ss_pred cCCCC-cEEEEEEcCCC----------CEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEc
Confidence 46887 55699999999 799999999999999998866 2333334332 3455
Q ss_pred CCceEEEeec-ce-ecccccC--CcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC---------CCCCCCCceeEE
Q 008363 158 DPRFVKLEPV-FR-CSMLKCG--GTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA---------SDSSIDSRPLLC 224 (568)
Q Consensus 158 ~~~~v~~~~~-~~-~~~~~~~--h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~---------~~~~~~~~~~~~ 224 (568)
.++.+.+|+. .. ....+.+ |...| .+++|+ + +.+|++|+.||.|++||+.+ . .++..
T Consensus 77 ~dg~i~~wd~~~~~~~~~~~~~~~~~~v-~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~------~~~~~ 146 (342)
T 1yfq_A 77 VQGEILKVDLIGSPSFQALTNNEANLGI-CRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKN------LNSNN 146 (342)
T ss_dssp TTSCEEEECSSSSSSEEECBSCCCCSCE-EEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEEEE------SCSSS
T ss_pred CCCeEEEEEeccCCceEeccccCCCCce-EEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccccC------CeeeE
Confidence 7888999987 55 3345567 99999 999999 6 78999999999999999986 4 44445
Q ss_pred eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCC-CCc-ceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCc
Q 008363 225 FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRD-PFR-PLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGA 300 (568)
Q Consensus 225 ~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~-~~~-~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~ 300 (568)
+. |...|.+++|+|+ . |++++.++ |++||+++ ... .......|...|.+++|+| ++.+|++++.||.
T Consensus 147 ~~-~~~~v~~~~~~~~-------~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~ 217 (342)
T 1yfq_A 147 TK-VKNKIFTMDTNSS-------R-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp SS-SCCCEEEEEECSS-------E-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE
T ss_pred Ee-eCCceEEEEecCC-------c-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc
Confidence 54 8899999999976 3 88888888 99999998 533 2344557888999999999 9999999999999
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCC---------CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF---------AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~---------~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
|++|+++..... ..+ ..+..+.+|.. .|++++|+|++.+|++++.||.|++||+.++....
T Consensus 218 i~i~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~ 287 (342)
T 1yfq_A 218 VAVEFFDDQGDD--YNS--------SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp EEEEECCTTCCS--TTC--------TTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEcCCCcc--ccc--------ccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhh
Confidence 999999642000 001 23457777755 99999999999999999999999999999887766
Q ss_pred cCCCC-CcceeeeecccCCCCceEEcccCC
Q 008363 372 DHSRN-RPMHFLCGSVTEDESAITVNTPLD 400 (568)
Q Consensus 372 ~~~~~-~~~~~~~~s~~~~~~~i~~~~~~~ 400 (568)
....+ ..+ +.+.+ +++..+++++...
T Consensus 288 ~~~~~h~~~-v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 288 NFAKFNEDS-VVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp ECCCCSSSE-EEEEE--ECSSEEEEEEECT
T ss_pred hhhcccCCC-ceEec--CCCCeEEEEecCC
Confidence 54443 332 22222 7777777765443
No 76
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.95 E-value=1.9e-25 Score=235.64 Aligned_cols=232 Identities=12% Similarity=0.156 Sum_probs=195.9
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K 154 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~ 154 (568)
.+..+.+|.+ .|++++|+|++ +|++|+.||+|+|||+.+++++..+.+|.. +
T Consensus 154 ~~~~~~~h~~-~V~~l~~~~~~-----------~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~ 221 (464)
T 3v7d_B 154 FLLQLSGHDG-GVWALKYAHGG-----------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221 (464)
T ss_dssp EEEEECCCSS-CEEEEEECSTT-----------EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEE
T ss_pred EEEEEeCCCc-CEEEEEEcCCC-----------EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEE
Confidence 3445568988 55699999886 899999999999999999988888876654 4
Q ss_pred cCCCCceEEEeeccee-------------------------cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEE
Q 008363 155 EGTDPRFVKLEPVFRC-------------------------SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWK 209 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~~-------------------------~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd 209 (568)
.++.++.+++|+.... .....+|...+ .++. +++.+|++|+.||+|++||
T Consensus 222 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~----~~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 222 TGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVS----GHGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp EEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE-EEEE----EETTEEEEEETTSCEEEEE
T ss_pred EEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE-EEEc----CCCCEEEEEeCCCeEEEEE
Confidence 5677888999987652 33456788888 7776 4578999999999999999
Q ss_pred ccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC
Q 008363 210 FVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD 288 (568)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~ 288 (568)
+.+. .++..+.+|...|.+++|+|++ .+|++|+.|+ |++||++++ .++..+.+|...|.+++|+
T Consensus 297 ~~~~------~~~~~~~~~~~~v~~~~~~~~~------~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~-- 361 (464)
T 3v7d_B 297 VAQM------KCLYILSGHTDRIYSTIYDHER------KRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS-- 361 (464)
T ss_dssp TTTT------EEEEEECCCSSCEEEEEEETTT------TEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--
T ss_pred CCCC------cEEEEecCCCCCEEEEEEcCCC------CEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--
Confidence 9876 8889999999999999999998 8999999999 999999987 8888999999999999998
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
+.+|++++.||.|++||++. +.. ... ..|...+..++|++++.+|++++ ||.|++||+.+++
T Consensus 362 ~~~l~s~s~dg~v~vwd~~~--------~~~--------~~~-~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 362 DKFLVSAAADGSIRGWDAND--------YSR--------KFS-YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp SSEEEEEETTSEEEEEETTT--------CCE--------EEE-EECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CCEEEEEeCCCcEEEEECCC--------Cce--------eee-ecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 58999999999999999954 221 122 23667788899999999999999 9999999999988
Q ss_pred eecc
Q 008363 369 VEKD 372 (568)
Q Consensus 369 ~~~~ 372 (568)
....
T Consensus 424 ~~~~ 427 (464)
T 3v7d_B 424 LVHA 427 (464)
T ss_dssp EEES
T ss_pred EEeh
Confidence 7764
No 77
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.95 E-value=1.4e-26 Score=235.27 Aligned_cols=217 Identities=13% Similarity=0.187 Sum_probs=175.3
Q ss_pred EEEeeccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 92 VVLCLAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
+..+.+|.+ .|.+++|+| ++ .+|++|+.||.|+|||+.+++.+..+..
T Consensus 108 ~~~~~~~~~-~i~~~~~~~~~~----------~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------------------- 156 (366)
T 3k26_A 108 IKHYVGHGN-AINELKFHPRDP----------NLLLSVSKDHALRLWNIQTDTLVAIFGG-------------------- 156 (366)
T ss_dssp EEEEESCCS-CEEEEEECSSCT----------TEEEEEETTSCEEEEETTTTEEEEEECS--------------------
T ss_pred eeeecCCCC-cEEEEEECCCCC----------CEEEEEeCCCeEEEEEeecCeEEEEecc--------------------
Confidence 444567888 555999999 77 7999999999999999999877765411
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC----------------------CCceeEEeeCC
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI----------------------DSRPLLCFSAD 228 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~----------------------~~~~~~~~~~h 228 (568)
..+|...| .+++|+ |++.+|++|+.||.|++||+.+..... .........+|
T Consensus 157 ---~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (366)
T 3k26_A 157 ---VEGHRDEV-LSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH 230 (366)
T ss_dssp ---TTSCSSCE-EEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred ---cccccCce-eEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence 15788898 999999 789999999999999999998652100 00112334459
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc-------------ceeeeCCCCCCeEEEEEcCC--CCEE
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR-------------PLWDIHPAPKFIYGLDWLPD--PGCV 292 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~-------------~~~~~~~h~~~i~~l~~sp~--~~~l 292 (568)
...|.+++|+ + .+|++++.|+ |++||+++... .+..+..|...|++++|+|+ +++|
T Consensus 231 ~~~v~~~~~~--~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l 302 (366)
T 3k26_A 231 RNYVDCVRWL--G------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKML 302 (366)
T ss_dssp SSCCCEEEEE--T------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEE
T ss_pred cceEEEEEEc--C------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEE
Confidence 9999999999 5 6999999999 99999987632 25667788999999999999 9999
Q ss_pred EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++++.||.|++||++. +++.. ..+..+.+| ...|++++|+|++.+|++++.||.|++||+.
T Consensus 303 ~~~~~dg~i~vwd~~~--------~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 303 ALGNQVGKLYVWDLEV--------EDPHK----AKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECTTSCEEEEECCS--------SSGGG----CEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEecCCcEEEEECCC--------CCCcc----ccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 9999999999999954 43321 234577777 7999999999999999999999999999984
No 78
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.5e-26 Score=231.70 Aligned_cols=218 Identities=9% Similarity=0.070 Sum_probs=167.7
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccC---------CccCCCCceEEEeecce------------ecccccCCcCcc
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSS---------MKEGTDPRFVKLEPVFR------------CSMLKCGGTQSI 181 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~---------~~~~~~~~~v~~~~~~~------------~~~~~~~h~~~V 181 (568)
.+|++|+.||.|+|||+.+++.+..+.... -++++.++.+++|.... ......+|...|
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v 128 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEI 128 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCE
T ss_pred CEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCE
Confidence 799999999999999999988777664221 14677889999996542 112334677889
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF-SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
.+++|+|..++.+|++|+.||+|++||+.++ .++..+ ..|...|.+++|+|++ .+|++|+.|+ |+
T Consensus 129 -~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~~i~~~~~~pdg------~~lasg~~dg~i~ 195 (343)
T 3lrv_A 129 -IYMYGHNEVNTEYFIWADNRGTIGFQSYEDD------SQYIVHSAKSDVEYSSGVLHKDS------LLLALYSPDGILD 195 (343)
T ss_dssp -EEEECCC---CCEEEEEETTCCEEEEESSSS------CEEEEECCCSSCCCCEEEECTTS------CEEEEECTTSCEE
T ss_pred -EEEEcCCCCCCCEEEEEeCCCcEEEEECCCC------cEEEEEecCCCCceEEEEECCCC------CEEEEEcCCCEEE
Confidence 9999992118899999999999999999876 555555 3456689999999999 8999999999 99
Q ss_pred EEECCCCCcceeeeCC-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 260 FWDIRDPFRPLWDIHP-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
+||++++......+.. |.+.|++++|+|++.+|++++ |+.|++||++.. +.+ ..+..+..|...+
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~--------~~~-----~~~~~~~~~~~~~ 261 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKD--------VGT-----LAYPTYTIPEFKT 261 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSS--------TTC-----BSSCCCBC-----
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCC--------Ccc-----eeecccccccccc
Confidence 9999988433267777 999999999999999999999 559999999753 221 1122222344444
Q ss_pred --EEEEEecCCCEEEEEeC-CCeEEEEEcCCC
Q 008363 339 --WSVQVSRLTGMVAYCSA-DGTVHRFQLTAK 367 (568)
Q Consensus 339 --~~l~~sp~~~~l~s~s~-Dg~v~iwd~~~~ 367 (568)
.+++|+|++.+|++++. |+.|++|++...
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEccc
Confidence 46999999999999998 999999999543
No 79
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.95 E-value=2.3e-25 Score=227.07 Aligned_cols=212 Identities=11% Similarity=0.139 Sum_probs=177.3
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.+..+.+|.+ .+.+++|+|++ .+|++++.||.|++||+.+++....+.
T Consensus 44 ~~~~~~~h~~-~v~~~~~~~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~--------------------- 91 (372)
T 1k8k_C 44 QVHELKEHNG-QVTGVDWAPDS----------NRIVTCGTDRNAYVWTLKGRTWKPTLV--------------------- 91 (372)
T ss_dssp EEEEEECCSS-CEEEEEEETTT----------TEEEEEETTSCEEEEEEETTEEEEEEE---------------------
T ss_pred eeeeecCCCC-cccEEEEeCCC----------CEEEEEcCCCeEEEEECCCCeeeeeEE---------------------
Confidence 3445567888 55599999999 799999999999999998876443321
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..+|...| .+++|+ +++.+|++|+.||.|++||+..... .... ....+|...|.+++|+|++ .+
T Consensus 92 ---~~~~~~~v-~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~~------~~ 156 (372)
T 1k8k_C 92 ---ILRINRAA-RCVRWA--PNEKKFAVGSGSRVISICYFEQEND---WWVCKHIKKPIRSTVLSLDWHPNS------VL 156 (372)
T ss_dssp ---CCCCSSCE-EEEEEC--TTSSEEEEEETTSSEEEEEEETTTT---EEEEEEECTTCCSCEEEEEECTTS------SE
T ss_pred ---eecCCCce-eEEEEC--CCCCEEEEEeCCCEEEEEEecCCCc---ceeeeeeecccCCCeeEEEEcCCC------CE
Confidence 15678888 999999 8899999999999999999987621 1122 3346789999999999998 89
Q ss_pred EEEEcCCC-EEEEECCC-----------------CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 250 ILTAGHGG-LKFWDIRD-----------------PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 250 las~s~d~-v~lwD~~~-----------------~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
|++++.|+ |++||++. ...++..+..|...|++++|+|++.+|++++.|+.|++||++.
T Consensus 157 l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--- 233 (372)
T 1k8k_C 157 LAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK--- 233 (372)
T ss_dssp EEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG---
T ss_pred EEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC---
Confidence 99999999 99999641 2266777889999999999999999999999999999999954
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
++ ++..+..|...|.+++|+|++.+|+++ .|+.|++|++.+
T Consensus 234 -----~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 234 -----KM--------AVATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -----TT--------EEEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -----Cc--------eeEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 43 346888999999999999999988877 899999999987
No 80
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.95 E-value=1e-25 Score=231.48 Aligned_cols=232 Identities=9% Similarity=0.101 Sum_probs=182.2
Q ss_pred eccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 96 LAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.+|.+ .|.+++|+| ++ .+|++++.||.|+|||+.+ ..+..+..+
T Consensus 115 ~~h~~-~v~~~~~~~~~~----------~~l~s~~~d~~i~iwd~~~-~~~~~~~~~----------------------- 159 (383)
T 3ei3_B 115 MGPGD-AITGMKFNQFNT----------NQLFVSSIRGATTLRDFSG-SVIQVFAKT----------------------- 159 (383)
T ss_dssp CSTTC-BEEEEEEETTEE----------EEEEEEETTTEEEEEETTS-CEEEEEECC-----------------------
T ss_pred CCcCC-ceeEEEeCCCCC----------CEEEEEeCCCEEEEEECCC-CceEEEecc-----------------------
Confidence 46888 555999999 55 7999999999999999996 444444222
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc-EEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN-VILTA 253 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~-~las~ 253 (568)
.+|...| .+++|+ |++.+|++|+.||.|++||+. + .++..+.+|...|.+++|+|++ . +|+++
T Consensus 160 ~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~------~~~~~~~~h~~~v~~~~~~~~~------~~~l~s~ 223 (383)
T 3ei3_B 160 DSWDYWY-CCVDVS--VSRQMLATGDSTGRLLLLGLD-G------HEIFKEKLHKAKVTHAEFNPRC------DWLMATS 223 (383)
T ss_dssp CCSSCCE-EEEEEE--TTTTEEEEEETTSEEEEEETT-S------CEEEEEECSSSCEEEEEECSSC------TTEEEEE
T ss_pred CCCCCCe-EEEEEC--CCCCEEEEECCCCCEEEEECC-C------CEEEEeccCCCcEEEEEECCCC------CCEEEEE
Confidence 4566788 999999 889999999999999999984 3 6788899999999999999998 5 99999
Q ss_pred cCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 254 GHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 254 s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+.|+ |++||+++.. ..+..+ +|...|++++|+| ++.+|++++.|+.|++||++. ++..
T Consensus 224 ~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~--------~~~~-------- 286 (383)
T 3ei3_B 224 SVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD--------WSKP-------- 286 (383)
T ss_dssp ETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB--------TTSC--------
T ss_pred eCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC--------Cccc--------
Confidence 9999 9999999732 444555 7899999999999 999999999999999999965 3222
Q ss_pred EEEecC-------C----------CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCC-cceeeeecccCCC
Q 008363 329 HLVNCS-------S----------FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNR-PMHFLCGSVTEDE 390 (568)
Q Consensus 329 ~~~~~h-------~----------~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 390 (568)
..+.+| . ..+..++|+|++.+ +++.||.|++||+.++.......... .....+.++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g 364 (383)
T 3ei3_B 287 DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTG 364 (383)
T ss_dssp SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTS
T ss_pred cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCc
Confidence 233322 2 34455677777766 77899999999999887655543322 2334444788888
Q ss_pred CceEEcc
Q 008363 391 SAITVNT 397 (568)
Q Consensus 391 ~~i~~~~ 397 (568)
..|+.++
T Consensus 365 ~~l~s~s 371 (383)
T 3ei3_B 365 DVLASGM 371 (383)
T ss_dssp SEEEEEE
T ss_pred cEEEEec
Confidence 8887764
No 81
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=6.6e-26 Score=233.56 Aligned_cols=214 Identities=14% Similarity=0.220 Sum_probs=176.0
Q ss_pred EEEeeccC----CceeeEEEEc----cCCCCcccccCcccE-EEEEeCCCcEEEEECCC------Cceee-----EEecc
Q 008363 92 VVLCLAHN----GKVAWDVKWK----PYNAVDCKCKQRLGY-LAVLLGNGSLEVWEVPL------LRTMK-----AIYLS 151 (568)
Q Consensus 92 ~~~~~~h~----~~~v~~v~~s----p~~~~~~~~~~~~~~-las~s~dg~V~iwd~~~------~~~~~-----~l~~~ 151 (568)
+.....|. ...+++++|+ |++ .+ |++++.||.|++||+.+ +..+. .+...
T Consensus 109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 178 (397)
T 1sq9_A 109 FEKLDLLDSDMKKHSFWALKWGASNDRLL----------SHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT 178 (397)
T ss_dssp EEEECCSCTTGGGSCEEEEEEECCC--------------CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE
T ss_pred ceeecccccccCCCcEEEEEEeeccCCCC----------ceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeee
Confidence 44456674 2366699999 998 78 99999999999999988 55543 22110
Q ss_pred CCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---C
Q 008363 152 SMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---D 228 (568)
Q Consensus 152 ~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h 228 (568)
......|...| .+++|+ |++ +|++|+.||.|++||+.+. .++..+.. |
T Consensus 179 -------------------~~~~~~~~~~i-~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~h 229 (397)
T 1sq9_A 179 -------------------VESPMTPSQFA-TSVDIS--ERG-LIATGFNNGTVQISELSTL------RPLYNFESQHSM 229 (397)
T ss_dssp -------------------ECCSSSSCCCC-CEEEEC--TTS-EEEEECTTSEEEEEETTTT------EEEEEEECCC--
T ss_pred -------------------eccccCCCCCc-eEEEEC--CCc-eEEEEeCCCcEEEEECCCC------ceeEEEeccccc
Confidence 00113477888 999999 888 9999999999999999876 78888888 9
Q ss_pred ---CCCeeEEEEccCCCCCCCCcEEEEEcCC---C-EEEEECCCCCcceeeeCC-------------CCCCeEEEEEcCC
Q 008363 229 ---TLPIRAVSWAPAESDSDSANVILTAGHG---G-LKFWDIRDPFRPLWDIHP-------------APKFIYGLDWLPD 288 (568)
Q Consensus 229 ---~~~V~~v~~~p~~~~~~~~~~las~s~d---~-v~lwD~~~~~~~~~~~~~-------------h~~~i~~l~~sp~ 288 (568)
...|.+++|+|++ .+|++++.| + |++||+++. .++..+.. |...|++++|+|+
T Consensus 230 ~~~~~~i~~i~~~~~~------~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 302 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQG------SLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 302 (397)
T ss_dssp -CCCCCEEEEEECSST------TEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------CCBSBSSCEEEEEECSS
T ss_pred cccCCccceEEECCCC------CEEEEEecCCCCceEEEEECCCC-cccceeccCcccccccccccccCCcEEEEEECCC
Confidence 9999999999998 899999999 8 999999987 77778877 9999999999999
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe------cC---------------CCCEEEEEEecCC
Q 008363 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CS---------------SFAIWSVQVSRLT 347 (568)
Q Consensus 289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h---------------~~~V~~l~~sp~~ 347 (568)
+++|++++.||.|++||++. + +.+..+. +| ...|++++|+|++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~--------~--------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKT--------K--------ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp SSEEEEEETTSEEEEEETTT--------T--------EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred CCEEEEEeCCCeEEEEEcCC--------C--------ceeEEEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence 99999999999999999954 4 3345777 77 9999999999998
Q ss_pred ----------CEEEEEeCCCeEEEEEcCCC
Q 008363 348 ----------GMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 348 ----------~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.+|++++.||.|++|++.++
T Consensus 367 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 367 WRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccccccceEEEecCCCcEEEEEcCCC
Confidence 79999999999999999764
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.95 E-value=4e-26 Score=235.21 Aligned_cols=242 Identities=14% Similarity=0.170 Sum_probs=189.9
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc------eeeEEeccCCccCCCCceEEEeec
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR------TMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.+.+|.+ .|++++|+| . +|++|+.||.|+||++.+++ .+..+
T Consensus 11 ~~~~h~~-~i~~~~~~~-~-----------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~------------------- 58 (397)
T 1sq9_A 11 AGKAHDA-DIFSVSACN-S-----------FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH------------------- 58 (397)
T ss_dssp ESSCSSS-CEEEEEECS-S-----------EEEEEETTSEEEEEESBCCTTCCGGGGEEEE-------------------
T ss_pred hhhhhhc-CeEEEEecC-C-----------eEEEEcCCCEEEEEECCCcccccCCCcceEE-------------------
Confidence 3458988 556999988 4 89999999999999999876 44443
Q ss_pred ceecccccCCcCccceEEEEccCCC----C---CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEE
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPP----H---DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAV 235 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~----g---~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v 235 (568)
.+|...| ++++|+ ++ + .+|++|+.||.|++||+...... ....+..+..| ...|.++
T Consensus 59 -------~~h~~~v-~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~ 127 (397)
T 1sq9_A 59 -------FVHKSGL-HHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDET-KKVIFEKLDLLDSDMKKHSFWAL 127 (397)
T ss_dssp -------ECCTTCE-EEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTT-CCEEEEEECCSCTTGGGSCEEEE
T ss_pred -------ecCCCcE-EEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCccc-ccccceeecccccccCCCcEEEE
Confidence 6888999 999999 77 8 89999999999999999876210 00117788888 5899999
Q ss_pred EEc----cCCCCCCCCcE-EEEEcCCC-EEEEECCC------CCccee-----ee-------CCCCCCeEEEEEcCCCCE
Q 008363 236 SWA----PAESDSDSANV-ILTAGHGG-LKFWDIRD------PFRPLW-----DI-------HPAPKFIYGLDWLPDPGC 291 (568)
Q Consensus 236 ~~~----p~~~~~~~~~~-las~s~d~-v~lwD~~~------~~~~~~-----~~-------~~h~~~i~~l~~sp~~~~ 291 (568)
+|+ |++ .+ |++++.|+ |++||++. . ..+. .+ ..|...|++++|+|++ +
T Consensus 128 ~~~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 199 (397)
T 1sq9_A 128 KWGASNDRLL------SHRLVATDVKGTTYIWKFHPFADESNS-LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-L 199 (397)
T ss_dssp EEECCC----------CEEEEEEETTSCEEEEEEESSSSHHHH-TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-E
T ss_pred EEeeccCCCC------ceEEEEEeCCCcEEEEeCCcccccccc-ceeeccCcceeeeeeccccCCCCCceEEEECCCc-e
Confidence 999 888 78 99999999 99999997 4 3333 55 5588999999999999 9
Q ss_pred EEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec---C---CCCEEEEEEecCCCEEEEEeCC---CeEEEE
Q 008363 292 VILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---S---SFAIWSVQVSRLTGMVAYCSAD---GTVHRF 362 (568)
Q Consensus 292 l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h---~~~V~~l~~sp~~~~l~s~s~D---g~v~iw 362 (568)
|++++.||.|++||++. + +.+..+.. | ...|.+++|+|++.+|++++.| |.|++|
T Consensus 200 l~~~~~dg~i~i~d~~~--------~--------~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~ 263 (397)
T 1sq9_A 200 IATGFNNGTVQISELST--------L--------RPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLY 263 (397)
T ss_dssp EEEECTTSEEEEEETTT--------T--------EEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCC--------C--------ceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEE
Confidence 99999999999999953 3 33467788 8 9999999999999999999999 999999
Q ss_pred EcCCCeeeccCCCC------------CcceeeeecccCCCCceEEcccCCCC
Q 008363 363 QLTAKAVEKDHSRN------------RPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 363 d~~~~~~~~~~~~~------------~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
|+.++......... ....+.+..+++++..|++++....+
T Consensus 264 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 264 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred ECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 99887655443320 12334556778888777776544433
No 83
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.95 E-value=9.6e-27 Score=238.39 Aligned_cols=209 Identities=12% Similarity=0.127 Sum_probs=163.9
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeeccee
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.+.+|.+ .|++++|+|++ .+|++++.||.|+|||+.++. ....+
T Consensus 50 ~~~~h~~-~v~~~~~s~~~----------~~l~s~s~d~~v~vwd~~~~~~~~~~~~~---------------------- 96 (377)
T 3dwl_C 50 TFSDHDK-IVTCVDWAPKS----------NRIVTCSQDRNAYVYEKRPDGTWKQTLVL---------------------- 96 (377)
T ss_dssp CBCCCSS-CEEEEEECTTT----------CCEEEEETTSSEEEC------CCCCEEEC----------------------
T ss_pred EEecCCc-eEEEEEEeCCC----------CEEEEEeCCCeEEEEEcCCCCceeeeeEe----------------------
Confidence 3457888 55599999999 799999999999999999865 23222
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-CCCCeeEEEEccCCCCCCCCcE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-DTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.+|...| ++++|+ |++.+|++|+.||+|++||+..... ......+.. |...|.+++|+|++ .+
T Consensus 97 ----~~~~~~v-~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~------~~ 160 (377)
T 3dwl_C 97 ----LRLNRAA-TFVRWS--PNEDKFAVGSGARVISVCYFEQEND---WWVSKHLKRPLRSTILSLDWHPNN------VL 160 (377)
T ss_dssp ----CCCSSCE-EEEECC--TTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTS------SE
T ss_pred ----cccCCce-EEEEEC--CCCCEEEEEecCCeEEEEEECCccc---ceeeeEeecccCCCeEEEEEcCCC------CE
Confidence 6788999 999999 7899999999999999999986621 124667777 99999999999998 89
Q ss_pred EEEEcCCC-EEEEECCCC-----------------CcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEcccccc
Q 008363 250 ILTAGHGG-LKFWDIRDP-----------------FRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~-----------------~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
|++++.|+ |++||++.. ..++..+ +|...|++++|+|++++|++++.||.|++||++.
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~--- 236 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSA--- 236 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECS---
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCC---
Confidence 99999999 999998632 1345556 8999999999999999999999999999999964
Q ss_pred CCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++.. ...+..+.+|...|++++|+|++.+|++++.|+.+ +|+..
T Consensus 237 -----~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 237 -----PEQP----PRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp -----TTSC----EEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred -----CCCc----ceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 3320 01245788999999999999999999998866655 77664
No 84
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.95 E-value=5.9e-26 Score=229.91 Aligned_cols=237 Identities=16% Similarity=0.267 Sum_probs=183.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
..+|.+ .|++++|+|++. .++++|+. ||.|+|||+.+++.....
T Consensus 14 ~~~h~~-~v~~~~~~p~~~---------~l~~~~s~~~~d~~v~iw~~~~~~~~~~~----------------------- 60 (357)
T 3i2n_A 14 QKGFNY-TVFDCKWVPCSA---------KFVTMGNFARGTGVIQLYEIQHGDLKLLR----------------------- 60 (357)
T ss_dssp EEECSS-CEEEEEECTTSS---------EEEEEEC--CCCEEEEEEEECSSSEEEEE-----------------------
T ss_pred ccCCCC-ceEEEEEcCCCc---------eEEEecCccCCCcEEEEEeCCCCccccee-----------------------
Confidence 467888 555999999984 46667765 999999999987655332
Q ss_pred ccccCCcCccceEEEEccCCC---CCEEEEEeCCCeEEEEEccCCCCCCCCc-eeEEeeCCCCCeeEEEE------ccCC
Q 008363 172 MLKCGGTQSIPLTMEWSTSPP---HDYLLAGCHDGTVALWKFVASDSSIDSR-PLLCFSADTLPIRAVSW------APAE 241 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~---g~~l~sgs~Dg~I~iwd~~~~~~~~~~~-~~~~~~~h~~~V~~v~~------~p~~ 241 (568)
..+|...| .+++|+ |+ +.+|++|+.||.|++||+... . ++..+.+|...|.++.| +|++
T Consensus 61 --~~~~~~~v-~~~~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~s~~~ 129 (357)
T 3i2n_A 61 --EIEKAKPI-KCGTFG--ATSLQQRYLATGDFGGNLHIWNLEAP------EMPVYSVKGHKEIINAIDGIGGLGIGEGA 129 (357)
T ss_dssp --EEEESSCE-EEEECT--TCCTTTCCEEEEETTSCEEEECTTSC------SSCSEEECCCSSCEEEEEEESGGGCC-CC
T ss_pred --eecccCcE-EEEEEc--CCCCCCceEEEecCCCeEEEEeCCCC------CccEEEEEecccceEEEeeccccccCCCc
Confidence 04688888 999999 55 689999999999999999876 4 77888999999999965 5676
Q ss_pred CCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC----CeEEEE----EcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363 242 SDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK----FIYGLD----WLPDPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 242 ~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~----~i~~l~----~sp~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
.+|++++.|+ |++||+++...++..+..|.+ .|.+++ |+|++.+|++++.||.|++||++.
T Consensus 130 ------~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---- 199 (357)
T 3i2n_A 130 ------PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN---- 199 (357)
T ss_dssp ------CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT----
T ss_pred ------cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc----
Confidence 8999999999 999999987546777766554 788998 789999999999999999999964
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEec---CCCEEEEEeCCCeEEEEEcCCCeeeccCC----CCCcceeeeec
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSR---LTGMVAYCSADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGS 385 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp---~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s 385 (568)
++. .....|...|.+++|+| ++.+|++++.||.|++||+.++....... ......+.+..
T Consensus 200 ----~~~---------~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~ 266 (357)
T 3i2n_A 200 ----MAL---------RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVR 266 (357)
T ss_dssp ----TEE---------EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEE
T ss_pred ----Cce---------eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEE
Confidence 322 34567899999999999 89999999999999999997654332211 01122344556
Q ss_pred ccCCCC-ceEEccc
Q 008363 386 VTEDES-AITVNTP 398 (568)
Q Consensus 386 ~~~~~~-~i~~~~~ 398 (568)
+++++. .++.+..
T Consensus 267 ~~~~~~~~l~~~~~ 280 (357)
T 3i2n_A 267 HLPQNRELFLTAGG 280 (357)
T ss_dssp EETTEEEEEEEEET
T ss_pred ECCCCCcEEEEEeC
Confidence 666665 4554443
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=2e-25 Score=233.59 Aligned_cols=239 Identities=15% Similarity=0.283 Sum_probs=184.5
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
.+..+.+|.+. +++++|+|++. .+|++|+.||.|+||++..+...... +. .
T Consensus 173 ~~~~~~~h~~~-v~~l~~~~~~~---------~~l~s~~~dg~i~vwd~~~~~~~~~~---------------~~----~ 223 (430)
T 2xyi_A 173 PDLRLRGHQKE-GYGLSWNPNLN---------GYLLSASDDHTICLWDINATPKEHRV---------------ID----A 223 (430)
T ss_dssp CSEEEECCSSC-CCCEEECTTST---------TEEEEECTTSCEEEEETTSCCBGGGE---------------EE----C
T ss_pred CcEEecCCCCC-eEEEEeCCCCC---------CeEEEEeCCCeEEEEeCCCCCCCCce---------------ec----c
Confidence 34556788884 55999999983 49999999999999999874321110 00 0
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.....+|...| .+++|+|. ++.+|++++.||.|++||++.... ..++..+..|...|++|+|+|++ ..+|
T Consensus 224 ~~~~~~h~~~v-~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~-----~~~l 293 (430)
T 2xyi_A 224 KNIFTGHTAVV-EDVAWHLL-HESLFGSVADDQKLMIWDTRNNNT---SKPSHTVDAHTAEVNCLSFNPYS-----EFIL 293 (430)
T ss_dssp SEEECCCSSCE-EEEEECSS-CTTEEEEEETTSEEEEEETTCSCS---SSCSEEEECCSSCEEEEEECSSC-----TTEE
T ss_pred ceeecCCCCCE-eeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCC---CcceeEeecCCCCeEEEEeCCCC-----CCEE
Confidence 11226889999 99999942 567999999999999999986521 25667788999999999999998 2589
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
++|+.|+ |++||++....++..+..|...|++++|+|++. +|++++.|+.|+|||++...... ..........+.+
T Consensus 294 ~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~ 371 (430)
T 2xyi_A 294 ATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ--STEDAEDGPPELL 371 (430)
T ss_dssp EEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCC--CHHHHHHCCTTEE
T ss_pred EEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcccc--CccccccCCcceE
Confidence 9999999 999999986678888889999999999999995 58889999999999997632110 0000000001345
Q ss_pred EEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCeee
Q 008363 329 HLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
..+.+|...|++++|+|++. +|++++.||.|+||++....+.
T Consensus 372 ~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 67788999999999999998 9999999999999999765443
No 86
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.94 E-value=3.5e-26 Score=239.64 Aligned_cols=239 Identities=14% Similarity=0.159 Sum_probs=177.8
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM---------------- 153 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~---------------- 153 (568)
+.+..+.+|.+ .|.+|+|+|..+ .+|++|+.||+|+|||+.+... ..+..+..
T Consensus 155 ~~~~~~~gH~~-~V~~l~f~p~~~---------~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 223 (435)
T 4e54_B 155 PTFIKGIGAGG-SITGLKFNPLNT---------NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSRM 223 (435)
T ss_dssp CEEECCCSSSC-CCCEEEECSSCT---------TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTTE
T ss_pred eeEEEccCCCC-CEEEEEEeCCCC---------CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCCE
Confidence 44555678998 555999999543 7999999999999999987433 23222211
Q ss_pred -ccCCCCceEEEeecce-ecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 154 -KEGTDPRFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 154 -~~~~~~~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
+.++.++.+++|+... ....+.+|...| ++++|+ |++. +|++|+.||+|+|||++.... ...+....+|..
T Consensus 224 l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v-~~v~~~--p~~~~~~~s~s~d~~v~iwd~~~~~~---~~~~~~~~~h~~ 297 (435)
T 4e54_B 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKV-THVALN--PCCDWFLATASVDQTVKIWDLRQVRG---KASFLYSLPHRH 297 (435)
T ss_dssp EEEECSSSBEEEEESSSCBCCCSBCCSSCE-EEEEEC--TTCSSEEEEEETTSBCCEEETTTCCS---SSCCSBCCBCSS
T ss_pred EEEEeCCCcEeeeccCcceeEEEecccceE-Eeeeec--CCCceEEEEecCcceeeEEecccccc---cceEEEeeeccc
Confidence 4577888999998754 455667999999 999999 5554 788999999999999986532 122233457999
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC------CeEEEEEcCCCCEEEEEeC------
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK------FIYGLDWLPDPGCVILSFD------ 297 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~------~i~~l~~sp~~~~l~s~~~------ 297 (568)
.|++++|+|++ .+|++++.|+ |+|||++++ .....+..|.. .+..+.|+|++..+++++.
T Consensus 298 ~v~~~~~spdg------~~l~s~~~D~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 298 PVNAACFSPDG------ARLLTTDQKSEIRVYSASQW-DCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CEEECCBCTTS------SEEEEEESSSCEEEEESSSS-SSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred cccceeECCCC------CeeEEEcCCCEEEEEECCCC-ccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 99999999999 8999999999 999999987 44444444432 2345678888777777642
Q ss_pred ------CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCEEEE-EEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 298 ------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSV-QVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 298 ------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l-~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
++.|++||.. +|+.+ ..+ .+|...|.++ +|+|+|.+|++|+ |+.|+||++++++.
T Consensus 371 ~~~~~~~~~i~iwd~~--------~g~~~--------~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 371 SCTPYELRTIDVFDGN--------SGKMM--------CQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CSSTTCCCCEEEECSS--------SCCEE--------EEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEecCCCEEEEEECC--------CCcEE--------EEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 4579999984 45443 343 4788888887 6999999999876 88999999987654
No 87
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.94 E-value=3.8e-25 Score=261.49 Aligned_cols=260 Identities=12% Similarity=0.146 Sum_probs=209.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
.....+|.+ .|++++|+|++ .+||+|+.||+|+|||+.+++.+..+
T Consensus 608 ~~~~~~h~~-~v~~~~~s~~~----------~~l~s~~~d~~i~vw~~~~~~~~~~~----------------------- 653 (1249)
T 3sfz_A 608 RLVVRPHTD-AVYHACFSQDG----------QRIASCGADKTLQVFKAETGEKLLDI----------------------- 653 (1249)
T ss_dssp SEEECCCSS-CEEEEEECTTS----------SEEEEEETTSCEEEEETTTCCEEEEE-----------------------
T ss_pred eEEEecccc-cEEEEEECCCC----------CEEEEEeCCCeEEEEECCCCCEEEEe-----------------------
Confidence 344578998 55699999999 89999999999999999998888776
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
.+|...| ++++|+ |++.+|++|+.||+|+|||+.++ +++..+.+|...|.+++|+|++ ...+++
T Consensus 654 ---~~h~~~v-~~~~~s--~~~~~l~s~~~d~~v~vwd~~~~------~~~~~~~~~~~~v~~~~~~~~~----~~~~l~ 717 (1249)
T 3sfz_A 654 ---KAHEDEV-LCCAFS--SDDSYIATCSADKKVKIWDSATG------KLVHTYDEHSEQVNCCHFTNKS----NHLLLA 717 (1249)
T ss_dssp ---CCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEEEEEECSSS----SCCEEE
T ss_pred ---ccCCCCE-EEEEEe--cCCCEEEEEeCCCeEEEEECCCC------ceEEEEcCCCCcEEEEEEecCC----CceEEE
Confidence 7899999 999999 88999999999999999999977 8889999999999999999964 237899
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCC-----------------
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDV----------------- 313 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~----------------- 313 (568)
+++.|+ |++||++++ .++..+.+|...|++++|+|++++|++++.||.|++||++......
T Consensus 718 sg~~d~~v~vwd~~~~-~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQK-ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796 (1249)
T ss_dssp EEETTSCEEEEETTSS-SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------C
T ss_pred EEeCCCeEEEEECCCc-chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcccc
Confidence 999999 999999987 7888889999999999999999999999999999999986531100
Q ss_pred ---C-------CCCCCccC-----------ccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 314 ---P-------ATGKPFAG-----------TKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 314 ---~-------~~g~~~~~-----------~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
. ..|..+.. .....+..+ .+|...|.+++|+|++.++++++.||.|++|++.++....
T Consensus 797 ~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~ 876 (1249)
T 3sfz_A 797 VEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVA 876 (1249)
T ss_dssp CCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEE
T ss_pred ccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceee
Confidence 0 00000000 000111222 3788999999999999999999999999999999876655
Q ss_pred cCCCCCcceeeeecccCCCCceEEcccCCCCC
Q 008363 372 DHSRNRPMHFLCGSVTEDESAITVNTPLDNTP 403 (568)
Q Consensus 372 ~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~ 403 (568)
....+ ...+.+..+++++..+.+++....+.
T Consensus 877 ~~~~h-~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 877 DCRGH-LSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp EECCC-SSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred ecCCC-ccceEEEEECCCCCEEEEEeCCCeEE
Confidence 43332 23455667888888888776555443
No 88
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=3.2e-25 Score=218.50 Aligned_cols=213 Identities=11% Similarity=0.043 Sum_probs=160.8
Q ss_pred eeeEEEEccC----CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce---ecccc
Q 008363 102 VAWDVKWKPY----NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR---CSMLK 174 (568)
Q Consensus 102 ~v~~v~~sp~----~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~---~~~~~ 174 (568)
.+++++|+|+ + .++++++. .+.||++.+++.+... ....++.|++|.... .....
T Consensus 113 ~v~sla~spd~~~~~----------~~l~s~g~--~~~v~~l~~g~lv~ss------~~g~d~~V~~~~~s~dG~~~~s~ 174 (356)
T 2w18_A 113 EIRALFCSSDDESEK----------QVLLKSGN--IKAVLGLTKRRLVSSS------GTLSDQQVEVMTFAEDGGGKENQ 174 (356)
T ss_dssp EEEEECC------CC----------EEEEEEEE--EEEEEEETTTEEEEEE------SSSTTCEEEEEEECTTSCEEEEE
T ss_pred ceEEEEECCCccccc----------cEEEeCCC--eEEEEecCCCcEEEec------ccCCCCcEEEEEECCCCceeeee
Confidence 6778999999 7 68888774 4888999887777552 123577888887732 34455
Q ss_pred cCCcCccceEEEEcc-CCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEE
Q 008363 175 CGGTQSIPLTMEWST-SPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~-~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~l 250 (568)
.+|...+ ..++|++ ..++.+|++|+.|++|+|||+.++ ++++++.+|. ..+.+++|+|++ .++
T Consensus 175 ~~~~~~v-~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG------k~l~tL~g~~~~v~~v~~vafSpdG------~~l 241 (356)
T 2w18_A 175 FLMPPEE-TILTFAEVQGMQEALLGTTIMNNIVIWNLKTG------QLLKKMHIDDSYQASVCHKAYSEMG------LLF 241 (356)
T ss_dssp EECCCSS-CEEEEEEEETSTTEEEEEETTSEEEEEETTTC------CEEEEEECCC---CCCEEEEEEETT------EEE
T ss_pred ccCCCce-eeEEeeccCCCCceEEEecCCCcEEEEECCCC------cEEEEEcCCCcceeeeEEEEECCCC------CEE
Confidence 6888888 8999994 226789999999999999999987 8888888754 367788999998 665
Q ss_pred ------------EEEcCCC-EEEEECCCCCcceeee-----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363 251 ------------LTAGHGG-LKFWDIRDPFRPLWDI-----HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 251 ------------as~s~d~-v~lwD~~~~~~~~~~~-----~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
++|+.|+ |++||..++ ..+..+ .+|...+.+.+++ +.++++++.|++|+|||+.
T Consensus 242 vs~s~~~~~w~laSGs~D~tIklWd~~tg-k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~----- 313 (356)
T 2w18_A 242 IVLSHPCAKESESLRSPVFQLIVINPKTT-LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLL----- 313 (356)
T ss_dssp EEEC------------CCEEEEEEETTTT-EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETT-----
T ss_pred EEeccCCCcceeeccCCCcEEEEEECCCC-EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECC-----
Confidence 6678888 999999977 555443 4676665555555 8899999999999999994
Q ss_pred CCCCCCCccCccccceEEEecCCCCEE-EEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIW-SVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~-~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+|++ +.++.+|...+. .++|+|+|++|++|+.|++|+|||+
T Consensus 314 ---tGk~--------l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 314 ---LGQC--------TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---TCSE--------EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---CCcE--------EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 4644 478889987655 5899999999999999999999996
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.4e-26 Score=237.28 Aligned_cols=214 Identities=12% Similarity=0.103 Sum_probs=169.7
Q ss_pred EEEe-eccCCceeeEEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCC---CceeeEEeccCCccCCCCceEEEee
Q 008363 92 VVLC-LAHNGKVAWDVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL---LRTMKAIYLSSMKEGTDPRFVKLEP 166 (568)
Q Consensus 92 ~~~~-~~h~~~~v~~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~---~~~~~~l~~~~~~~~~~~~~v~~~~ 166 (568)
+..+ .+|.+ .|++++|+| ++ .+||+|+.||+|+|||+.+ +......
T Consensus 55 ~~~~~~~h~~-~V~~~~~s~~~~----------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~------------------ 105 (437)
T 3gre_A 55 IATLMENEPN-SITSSAVSPGET----------PYLITGSDQGVIKIWNLKEIIVGEVYSSS------------------ 105 (437)
T ss_dssp EEEECTTTTS-CEEEEEEECSSS----------CEEEEEETTSEEEEEEHHHHHTTCCCSCS------------------
T ss_pred EeeeccCCCC-ceEEEEECCCCC----------CEEEEecCCceEEEeECcccccCccccee------------------
Confidence 3344 56777 566999999 88 7999999999999999876 3311100
Q ss_pred cceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc---CCCCCCCCceeEEeeC------------CCCC
Q 008363 167 VFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV---ASDSSIDSRPLLCFSA------------DTLP 231 (568)
Q Consensus 167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~---~~~~~~~~~~~~~~~~------------h~~~ 231 (568)
...+|...| ++++|+ +++.+|++|+.||+|++||+. .+ ..+..+.. +...
T Consensus 106 ------~~~~h~~~v-~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~ 170 (437)
T 3gre_A 106 ------LTYDCSSTV-TQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQE------SEVKFLNCECIRKINLKNFGKNEY 170 (437)
T ss_dssp ------EEEECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEEEEEEEET------TEEEEEEEEEEEEEEGGGGSSCCC
T ss_pred ------eeccCCCCE-EEEEEe--CCCCEEEEEeCCCEEEEEEeccccCC------ceeeccccceeEEEEccCcccccC
Confidence 003688899 999999 788999999999999999995 33 23332222 4566
Q ss_pred eeEEE--EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC--CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEc
Q 008363 232 IRAVS--WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP--APKFIYGLDWLPDPGCVILSFDDGAMRIVSL 306 (568)
Q Consensus 232 V~~v~--~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~--h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~ 306 (568)
+.++. +++++ .+|++++.|+ |++||+++. .++..+.. |...|++++|+|++.+|++++.||.|++||+
T Consensus 171 ~~~~~~~~~~~~------~~l~~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 171 AVRMRAFVNEEK------SLLVALTNLSRVIIFDIRTL-ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp EEEEEEEECSSC------EEEEEEETTSEEEEEETTTC-CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEET
T ss_pred ceEEEEEEcCCC------CEEEEEeCCCeEEEEeCCCC-eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEc
Confidence 77776 44666 8999999999 999999987 77777777 8899999999999999999999999999999
Q ss_pred cccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEec----CCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 307 LKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVSR----LTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp----~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+. + .++..+. .|...|++++|+| ++.+|++++.||.|++||+.++.....
T Consensus 244 ~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 298 (437)
T 3gre_A 244 RF--------N--------VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYA 298 (437)
T ss_dssp TT--------T--------EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEE
T ss_pred CC--------c--------cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEE
Confidence 54 3 3345665 7888999997665 567999999999999999988775543
No 90
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=1.1e-24 Score=228.68 Aligned_cols=228 Identities=15% Similarity=0.251 Sum_probs=195.8
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCc
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPR 160 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~ 160 (568)
..+.+|.+.++.++. +++ ++|++|+.||.|+|||+.+++.+..+.+|.. +.++.++
T Consensus 112 ~~l~~h~~~v~~~~~--~~g----------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~dg 179 (445)
T 2ovr_B 112 KVLKGHDDHVITCLQ--FCG----------NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR 179 (445)
T ss_dssp EEEECSTTSCEEEEE--EET----------TEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred EEecccCCCcEEEEE--EcC----------CEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeCCC
Confidence 346789997775544 456 7999999999999999999999888877765 5678899
Q ss_pred eEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc
Q 008363 161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA 238 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~ 238 (568)
.+++|+..+ +...+.+|...| .+++|+ +..|++|+.||+|++||+.++ +++..+.+|...|.+++|
T Consensus 180 ~i~vwd~~~~~~~~~~~~h~~~v-~~~~~~----~~~l~s~s~dg~i~~wd~~~~------~~~~~~~~~~~~v~~~~~- 247 (445)
T 2ovr_B 180 TLKVWNAETGECIHTLYGHTSTV-RCMHLH----EKRVVSGSRDATLRVWDIETG------QCLHVLMGHVAAVRCVQY- 247 (445)
T ss_dssp CEEEEETTTTEEEEEECCCSSCE-EEEEEE----TTEEEEEETTSEEEEEESSSC------CEEEEEECCSSCEEEEEE-
T ss_pred eEEEEECCcCcEEEEECCCCCcE-EEEEec----CCEEEEEeCCCEEEEEECCCC------cEEEEEcCCcccEEEEEE-
Confidence 999999865 556677999999 999987 468999999999999999976 788899999999999999
Q ss_pred cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCC
Q 008363 239 PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 239 p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g 317 (568)
++ .+|++++.|+ |++||+++. .++..+.+|...|.+++| ++.+|++++.||.|++||++. +
T Consensus 248 -~~------~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~--------~ 309 (445)
T 2ovr_B 248 -DG------RRVVSGAYDFMVKVWDPETE-TCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET--------G 309 (445)
T ss_dssp -CS------SCEEEEETTSCEEEEEGGGT-EEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT--------C
T ss_pred -CC------CEEEEEcCCCEEEEEECCCC-cEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC--------C
Confidence 55 6899999999 999999987 888889999999999999 789999999999999999954 4
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+ ++..+.+|...+.++.++ +.+|++++.||.|++||+.++.....
T Consensus 310 ~--------~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~ 354 (445)
T 2ovr_B 310 N--------CIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQT 354 (445)
T ss_dssp C--------EEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred C--------EEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 3 346888999999988874 67999999999999999987765544
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=2.2e-25 Score=230.81 Aligned_cols=242 Identities=17% Similarity=0.283 Sum_probs=186.2
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceE
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLT 184 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~ 184 (568)
.++++|+.. .++++++.||.|+||++........ ....+.+|...| ++
T Consensus 39 ~~~~~~~~~---------~~~~~~~~~g~i~v~~~~~~~~~~~----------------------~~~~~~~h~~~V-~~ 86 (402)
T 2aq5_A 39 FCAVNPKFM---------ALICEASGGGAFLVLPLGKTGRVDK----------------------NVPLVCGHTAPV-LD 86 (402)
T ss_dssp SEEECSSEE---------EEEBCCSSSCCEEEEETTCCEECCT----------------------TCCCBCCCSSCE-EE
T ss_pred cEEECCCeE---------EEEEEEcCCCEEEEEECccCCCCCC----------------------CCceEecCCCCE-EE
Confidence 578888773 4566689999999999976322100 011227899999 99
Q ss_pred EEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCC-CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 185 MEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSID-SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 185 v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~-~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
++|+ | ++.+|++|+.||+|+|||+........ ..++..+.+|...|.+++|+|++ .++|++++.|+ |++|
T Consensus 87 ~~~~--p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-----~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 87 IAWC--PHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTA-----QNVLLSAGCDNVILVW 159 (402)
T ss_dssp EEEC--TTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSB-----TTEEEEEETTSCEEEE
T ss_pred EEeC--CCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCC-----CCEEEEEcCCCEEEEE
Confidence 9999 6 788999999999999999986632111 14677889999999999999997 26999999999 9999
Q ss_pred ECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC-
Q 008363 262 DIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA- 337 (568)
Q Consensus 262 D~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~- 337 (568)
|++++ ..+..+ ..|...|++++|+|++.+|++++.||.|++||++. ++ .+..+ .+|...
T Consensus 160 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--------~~--------~~~~~~~~~~~~~ 222 (402)
T 2aq5_A 160 DVGTG-AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--------GT--------VVAEKDRPHEGTR 222 (402)
T ss_dssp ETTTT-EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--------TE--------EEEEEECSSCSSS
T ss_pred ECCCC-CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--------Cc--------eeeeeccCCCCCc
Confidence 99987 777788 78999999999999999999999999999999954 32 33566 678776
Q ss_pred EEEEEEecCCCEEEEE---eCCCeEEEEEcCCCeeec-cCCCCCcceeeeecccCCCCceEE-cccCCCC
Q 008363 338 IWSVQVSRLTGMVAYC---SADGTVHRFQLTAKAVEK-DHSRNRPMHFLCGSVTEDESAITV-NTPLDNT 402 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~---s~Dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~i~~-~~~~~~~ 402 (568)
+.++.|+|++.+|+++ +.|+.|++||+.+..... ...........+..+++++..+.+ +.....+
T Consensus 223 ~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i 292 (402)
T 2aq5_A 223 PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSI 292 (402)
T ss_dssp CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCE
T ss_pred ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeE
Confidence 8999999999999999 799999999998754311 111111223455577888887754 4334433
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.8e-25 Score=252.82 Aligned_cols=208 Identities=12% Similarity=0.100 Sum_probs=173.8
Q ss_pred ceEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 90 PRVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 90 p~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
+......+|.+ .|++++|+|++ .+||+|+.||+|+||+..+.++...
T Consensus 8 ~~~~~~~gh~~-~V~~lafspdg----------~~lAsgs~Dg~I~lw~~~~~~~~~~---------------------- 54 (902)
T 2oaj_A 8 LAETNKYGMSS-KPIAAAFDFTQ----------NLLAIATVTGEVHIYGQQQVEVVIK---------------------- 54 (902)
T ss_dssp EEEEEEEECSS-CEEEEEEETTT----------TEEEEEETTSEEEEECSTTCEEEEE----------------------
T ss_pred eccccccCCCC-CcEEEEECCCC----------CEEEEEeCCCEEEEEeCCCcEEEEE----------------------
Confidence 44555679988 45599999999 8999999999999999987655433
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..|...| .+|+|+ | |.+|++++.|++|+|||+.++ +++..+. |...|++++|+|++ .+
T Consensus 55 -----~~~~~~V-~~l~fs--p-g~~L~S~s~D~~v~lWd~~~~------~~~~~~~-~~~~V~~v~~sp~g------~~ 112 (902)
T 2oaj_A 55 -----LEDRSAI-KEMRFV--K-GIYLVVINAKDTVYVLSLYSQ------KVLTTVF-VPGKITSIDTDASL------DW 112 (902)
T ss_dssp -----CSSCCCE-EEEEEE--T-TTEEEEEETTCEEEEEETTTC------SEEEEEE-CSSCEEEEECCTTC------SE
T ss_pred -----cCCCCCE-EEEEEc--C-CCEEEEEECcCeEEEEECCCC------cEEEEEc-CCCCEEEEEECCCC------CE
Confidence 4567788 999999 6 779999999999999999876 6777775 77899999999999 89
Q ss_pred EEEEcCCC-EEEEECCCCCcce-----------eeeCCCCCCeEEEEEcCC-CCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPL-----------WDIHPAPKFIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~-----------~~~~~h~~~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
|++|+.|+ |++||+.+. ... ..+.+|.+.|++++|+|+ +..|++|+.||.| +||++.
T Consensus 113 l~sgs~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~-------- 182 (902)
T 2oaj_A 113 MLIGLQNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVE-------- 182 (902)
T ss_dssp EEEEETTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTT--------
T ss_pred EEEEcCCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCC--------
Confidence 99999999 999999976 322 234679999999999996 5788999999999 999954
Q ss_pred CCCccCccccceEEEecC------------------CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 317 GKPFAGTKQQGLHLVNCS------------------SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~~h------------------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
+++ +..+.+| ...|++++|+|+|.+|++++.||.|++||+.+++..
T Consensus 183 ~~~--------~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 183 NEI--------KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp TEE--------EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEE
T ss_pred Cce--------EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEE
Confidence 322 3444444 578999999999999999999999999999887653
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=5.3e-25 Score=230.54 Aligned_cols=234 Identities=12% Similarity=0.210 Sum_probs=192.8
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD 158 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~ 158 (568)
.+..+.+|.+ .|.+++| ++ .+|++|+.||.|+|||+.+++.+..+..|.. +.++.
T Consensus 165 ~~~~~~~h~~-~v~~l~~--~~----------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~ 231 (435)
T 1p22_A 165 CKRILTGHTG-SVLCLQY--DE----------RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK 231 (435)
T ss_dssp EEEEECCCSS-CEEEEEC--CS----------SEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET
T ss_pred EEEEEcCCCC-cEEEEEE--CC----------CEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC
Confidence 3445668988 4459998 56 7999999999999999999999888877655 56778
Q ss_pred CceEEEeeccee-----cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee
Q 008363 159 PRFVKLEPVFRC-----SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR 233 (568)
Q Consensus 159 ~~~v~~~~~~~~-----~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~ 233 (568)
++.+++|+.... .....+|...| .+++|. +.+|++|+.||+|++||+.+. .++..+.+|...|.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~~~~~~v-~~~~~~----~~~l~s~~~dg~i~vwd~~~~------~~~~~~~~~~~~v~ 300 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLVGHRAAV-NVVDFD----DKYIVSASGDRTIKVWNTSTC------EFVRTLNGHKRGIA 300 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEECCCSSCE-EEEEEE----TTEEEEEETTSEEEEEETTTC------CEEEEEECCSSCEE
T ss_pred CCcEEEEeCCCCCCceeeeEecCCCCcE-EEEEeC----CCEEEEEeCCCeEEEEECCcC------cEEEEEcCCCCcEE
Confidence 899999988652 24567899999 999985 679999999999999999976 78889999999999
Q ss_pred EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363 234 AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 234 ~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
+++|+ + .+|++|+.|+ |++||++++ .++..+.+|...|++++| ++.+|++|+.||.|++||++.....
T Consensus 301 ~~~~~--~------~~l~~g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~ 369 (435)
T 1p22_A 301 CLQYR--D------RLVVSGSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDP 369 (435)
T ss_dssp EEEEE--T------TEEEEEETTSCEEEEETTTC-CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTST
T ss_pred EEEeC--C------CEEEEEeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCc
Confidence 99994 4 6999999999 999999987 888889999999999999 6889999999999999999653311
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
.... ...++..+.+|...|++++| ++.+|++++.||.|++||+.+..
T Consensus 370 ~~~~-------~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 370 RAPA-------GTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TSCT-------TTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred cccc-------cchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 1000 11256788999999999999 78899999999999999997654
No 94
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.94 E-value=3e-24 Score=225.39 Aligned_cols=257 Identities=13% Similarity=0.228 Sum_probs=210.7
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTD 158 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~ 158 (568)
.+..+.+|.+ .|++++|+ + .+|++|+.||+|++||+.+++.+..+.+|.. +.++.
T Consensus 151 ~~~~~~~h~~-~v~~~~~~--~----------~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~ 217 (445)
T 2ovr_B 151 CLRTLVGHTG-GVWSSQMR--D----------NIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 217 (445)
T ss_dssp EEEECCCCSS-CEEEEEEE--T----------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred EEEEEcCCCC-CEEEEEec--C----------CEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeC
Confidence 3445568888 55699997 4 5899999999999999999999888877765 56788
Q ss_pred CceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 159 PRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 159 ~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
++.+++|+... +...+.+|...| .+++|. +.+|++|+.||.|++||+.+. .++..+.+|...|.+++
T Consensus 218 dg~i~~wd~~~~~~~~~~~~~~~~v-~~~~~~----~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~ 286 (445)
T 2ovr_B 218 DATLRVWDIETGQCLHVLMGHVAAV-RCVQYD----GRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTNRVYSLQ 286 (445)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCE-EEEEEC----SSCEEEEETTSCEEEEEGGGT------EEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCCcEEEEEcCCcccE-EEEEEC----CCEEEEEcCCCEEEEEECCCC------cEeEEecCCCCceEEEE
Confidence 99999999865 555667899999 999984 679999999999999999976 88889999999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
| ++ .+|++++.|+ |++||++++ .++..+.+|...+.++.++ +.+|++++.||.|++||++.
T Consensus 287 ~--~~------~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~------- 348 (445)
T 2ovr_B 287 F--DG------IHVVSGSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKT------- 348 (445)
T ss_dssp E--CS------SEEEEEETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTT-------
T ss_pred E--CC------CEEEEEeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEe--CCEEEEEeCCCeEEEEECCC-------
Confidence 9 55 7999999999 999999987 7888889999999988875 67999999999999999953
Q ss_pred CCCCccCccccceEEEec---CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCC----CCCcceeeeecccC
Q 008363 316 TGKPFAGTKQQGLHLVNC---SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGSVTE 388 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~ 388 (568)
++. +..+.+ |...|++++|+ +.+|++++.||.|++||+.+++...... ........+.++++
T Consensus 349 -~~~--------~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 349 -GQC--------LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN 417 (445)
T ss_dssp -CCE--------EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS
T ss_pred -CcE--------EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC
Confidence 433 356665 88999999995 6899999999999999999887654431 12223345556777
Q ss_pred CCCceEEcccCC
Q 008363 389 DESAITVNTPLD 400 (568)
Q Consensus 389 ~~~~i~~~~~~~ 400 (568)
++..+++++..+
T Consensus 418 ~~~~la~~~~dg 429 (445)
T 2ovr_B 418 TKLVCAVGSRNG 429 (445)
T ss_dssp SEEEEEEECSSS
T ss_pred CEEEEEEcccCC
Confidence 777777765444
No 95
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-24 Score=224.80 Aligned_cols=232 Identities=13% Similarity=0.170 Sum_probs=186.4
Q ss_pred EEEeeccCCce-eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 92 VVLCLAHNGKV-AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 92 ~~~~~~h~~~~-v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
+....+|...+ +.++.|++. .+++++.||.|+|||+.+++....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~s~~------------~l~~~~~d~~v~lw~~~~~~~~~~~~--------------------- 130 (401)
T 4aez_A 84 VLDAPGIIDDYYLNLLDWSNL------------NVVAVALERNVYVWNADSGSVSALAE--------------------- 130 (401)
T ss_dssp EEECTTCCCCTTCBCEEECTT------------SEEEEEETTEEEEEETTTCCEEEEEE---------------------
T ss_pred eeeCCCCcCCceEEEEeecCC------------CEEEEECCCeEEEeeCCCCcEeEeee---------------------
Confidence 33344665532 335777753 36778899999999999987765541
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..|...| ++++|+ |++.+|++|+.||.|++||+.++ ..+..+.+|...|.+++|+ + .+|
T Consensus 131 ----~~~~~~v-~~v~~s--~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~v~~~~~~--~------~~l 189 (401)
T 4aez_A 131 ----TDESTYV-ASVKWS--HDGSFLSVGLGNGLVDIYDVESQ------TKLRTMAGHQARVGCLSWN--R------HVL 189 (401)
T ss_dssp ----CCTTCCE-EEEEEC--TTSSEEEEEETTSCEEEEETTTC------CEEEEECCCSSCEEEEEEE--T------TEE
T ss_pred ----cCCCCCE-EEEEEC--CCCCEEEEECCCCeEEEEECcCC------eEEEEecCCCCceEEEEEC--C------CEE
Confidence 3478888 999999 78999999999999999999876 7888999999999999994 4 699
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
++++.|+ |++||++.....+..+.+|...|.+++|+|++.+|++++.|+.|++||++. + .++.
T Consensus 190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--------~--------~~~~ 253 (401)
T 4aez_A 190 SSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--------S--------IPKF 253 (401)
T ss_dssp EEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--------S--------SEEE
T ss_pred EEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--------C--------CccE
Confidence 9999999 999999966577888889999999999999999999999999999999954 3 3346
Q ss_pred EEecCCCCEEEEEEecCC-CEEEEEe--CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 330 LVNCSSFAIWSVQVSRLT-GMVAYCS--ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~-~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
.+..|...|.+++|+|++ .++++++ .|+.|++||+.++......... ....+..+++++..+.+
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG--SQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS--SCEEEEEECSSSSEEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC--CcEEEEEECCCCCeEEE
Confidence 788899999999999986 5666665 7999999999887665443221 23445567777777666
No 96
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-25 Score=232.92 Aligned_cols=244 Identities=14% Similarity=0.193 Sum_probs=177.1
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----c---cCCCCceEEEeecceecccc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----K---EGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----~---~~~~~~~v~~~~~~~~~~~~ 174 (568)
.|++|+|+|+| .+||+++.|++|+ |...++++ .+|.. + ..+.++.+.+|....-....
T Consensus 17 ~v~sv~~SpDG----------~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~ 81 (588)
T 2j04_A 17 WKNNLTWARDG----------TLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLN 81 (588)
T ss_dssp SSCCEEECTTS----------CEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSST
T ss_pred cEEEEEECCCC----------CEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCCCcceEEEEeCCCceEee
Confidence 45599999999 8999999999999 76555544 33332 1 01123333333322111122
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC-----CeeEEEEccCCCCCCCCcE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-----PIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-----~V~~v~~~p~~~~~~~~~~ 249 (568)
..|...| ++++|+ |+|.+||+++.||+|+|||.. .++..+. |.. .|.+++|+|+| ++
T Consensus 82 ~~~~~~V-~~vawS--PdG~~LAs~s~dg~V~iwd~~--------~~l~~l~-~~~~~~~~sv~svafSPDG------~~ 143 (588)
T 2j04_A 82 SQPVCYP-RVCKPS--PIDDWMAVLSNNGNVSVFKDN--------KMLTNLD-SKGNLSSRTYHCFEWNPIE------SS 143 (588)
T ss_dssp TSCSCCE-EEEEEC--SSSSCEEEEETTSCEEEEETT--------EEEEECC-CSSCSTTTCEEEEEECSSS------SC
T ss_pred cCCCCcE-EEEEEC--CCCCEEEEEeCCCcEEEEeCC--------ceeeecc-CCCccccccEEEEEEcCCC------CE
Confidence 2667888 999999 899999999999999999954 4666666 665 49999999999 89
Q ss_pred EEEEcCCC-EEEEECCCCCc------ceeee----CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363 250 ILTAGHGG-LKFWDIRDPFR------PLWDI----HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~------~~~~~----~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
||+|+.|+ |++||+.++.. .+..+ .+|...|.+++|+|+| |++++.|++|++||+.. +.
T Consensus 144 LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~--------~~ 213 (588)
T 2j04_A 144 IVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSA--------SS 213 (588)
T ss_dssp EEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCS--------SS
T ss_pred EEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCC--------Cc
Confidence 99999999 99999998632 24565 6788999999999999 88999999999999943 22
Q ss_pred CccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc--cCCCCceEE
Q 008363 319 PFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV--TEDESAITV 395 (568)
Q Consensus 319 ~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~i~~ 395 (568)
.. ...+++ .+|...|.+++|+ +.+||+++ |++|++||+.++........+.. .+...++ ++++..+++
T Consensus 214 ~~-----~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~-~V~~va~~~s~d~~~La~ 284 (588)
T 2j04_A 214 HQ-----PVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLE-NFHIIPLNHEKESTILLM 284 (588)
T ss_dssp SC-----CCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCS-CCCEEEETTCSSCEEEEE
T ss_pred cc-----cceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCc-eEEEEEeeeCCCCCEEEE
Confidence 11 123456 4788999999999 68999987 79999999998776332212222 2222355 666655555
Q ss_pred cc
Q 008363 396 NT 397 (568)
Q Consensus 396 ~~ 397 (568)
..
T Consensus 285 a~ 286 (588)
T 2j04_A 285 SN 286 (588)
T ss_dssp CS
T ss_pred Ec
Confidence 43
No 97
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.94 E-value=1.5e-24 Score=226.99 Aligned_cols=223 Identities=12% Similarity=0.210 Sum_probs=188.7
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC------------ccCCCCceEE
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM------------KEGTDPRFVK 163 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~------------~~~~~~~~v~ 163 (568)
..|.. .|.++.| ++ .+|++|+.||.|+|||+.+++....+.+|.. +.++.++.++
T Consensus 130 ~~~~~-~v~~~~~--d~----------~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~ 196 (435)
T 1p22_A 130 SETSK-GVYCLQY--DD----------QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVR 196 (435)
T ss_dssp CSSCC-CEEEEEC--CS----------SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEE
T ss_pred cCCCC-cEEEEEE--CC----------CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEE
Confidence 34555 4447766 66 7999999999999999999999888887765 5678899999
Q ss_pred Eeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCC
Q 008363 164 LEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAE 241 (568)
Q Consensus 164 ~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~ 241 (568)
+|+..+ +...+.+|...| .+++|+ +.+|++|+.||+|++||+.+... ......+.+|...|.+++| ++
T Consensus 197 vwd~~~~~~~~~~~~h~~~v-~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~---~~~~~~~~~~~~~v~~~~~--~~ 266 (435)
T 1p22_A 197 VWDVNTGEMLNTLIHHCEAV-LHLRFN----NGMMVTCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDF--DD 266 (435)
T ss_dssp EEESSSCCEEEEECCCCSCE-EEEECC----TTEEEEEETTSCEEEEECSSSSC---CEEEEEECCCSSCEEEEEE--ET
T ss_pred EEECCCCcEEEEEcCCCCcE-EEEEEc----CCEEEEeeCCCcEEEEeCCCCCC---ceeeeEecCCCCcEEEEEe--CC
Confidence 999876 555667899999 999987 35999999999999999987622 1233678899999999999 45
Q ss_pred CCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCc
Q 008363 242 SDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 242 ~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
.+|++|+.|+ |++||+++. ..+..+.+|...|.++.|+ +.+|++|+.||.|++||++. ++
T Consensus 267 ------~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~--------~~-- 327 (435)
T 1p22_A 267 ------KYIVSASGDRTIKVWNTSTC-EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIEC--------GA-- 327 (435)
T ss_dssp ------TEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTT--------CC--
T ss_pred ------CEEEEEeCCCeEEEEECCcC-cEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCC--------CC--
Confidence 6999999999 999999987 7888888999999999995 78999999999999999953 43
Q ss_pred cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
++..+.+|...|.+++| ++.+|++|+.||.|++||+.++.
T Consensus 328 ------~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 328 ------CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp ------EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHT
T ss_pred ------EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCC
Confidence 34688999999999999 78999999999999999996543
No 98
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=5.4e-24 Score=221.83 Aligned_cols=227 Identities=16% Similarity=0.244 Sum_probs=185.8
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+..|+|++++ +||+|. |++|+|||+.++++...+.. .+|...|
T Consensus 108 ~~~l~wS~~n-----------~lAvgl-d~tV~lWd~~tg~~~~~~~~------------------------~~~~~~V- 150 (420)
T 4gga_A 108 LNLVDWSSGN-----------VLAVAL-DNSVYLWSASSGDILQLLQM------------------------EQPGEYI- 150 (420)
T ss_dssp CBCEEECTTS-----------EEEEEE-TTEEEEEETTTCCEEEEEEC------------------------CSTTCCE-
T ss_pred ceeEEECCCC-----------EEEEEe-CCEEEEEECCCCCEEEEEEe------------------------cCCCCcE-
Confidence 3479999764 888876 89999999999988766522 5788889
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
++|+|+ |+|.+||+|+.||+|+|||+.++ +++..+.+|...+.+++|+ + .+|++|+.|+ +++|
T Consensus 151 ~sv~fs--pdg~~lasgs~Dg~v~iWd~~~~------~~~~~~~~h~~~v~~~s~~--~------~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 151 SSVAWI--KEGNYLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSWN--S------YILSSGSRSGHIHHH 214 (420)
T ss_dssp EEEEEC--TTSSEEEEEETTSCEEEEETTTT------EEEEEECCCSSCEEEEEEE--T------TEEEEEETTSEEEEE
T ss_pred EEEEEC--CCCCEEEEEECCCeEEEEEcCCC------cEEEEEeCCCCceEEEeeC--C------CEEEEEeCCCceeEe
Confidence 999999 89999999999999999999977 8899999999999999875 3 5999999999 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV 341 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l 341 (568)
|.+.....+..+.+|...+..+.|+|++.+|++++.|+.|++||... ++... ..+.....|...|.++
T Consensus 215 d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~--------~~~~~----~~~~~~~~~~~~V~~~ 282 (420)
T 4gga_A 215 DVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP--------GEGGW----VPLQTFTQHQGAVKAV 282 (420)
T ss_dssp ETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC--------CSSCS----CCSEEECCCSSCEEEE
T ss_pred eecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc--------ccccc----eeeeeecccCCceeee
Confidence 99987777788899999999999999999999999999999999964 22211 3456788899999999
Q ss_pred EEecCC-CEEEEE--eCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 342 QVSRLT-GMVAYC--SADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 342 ~~sp~~-~~l~s~--s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
+|+|.+ .+++++ +.|++|++||+.++.......... ...+..+.+++..+.++
T Consensus 283 ~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~--~v~~~~~~~~~~~lv~~ 338 (420)
T 4gga_A 283 AWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS--QVCSILWSPHYKELISG 338 (420)
T ss_dssp EECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS--CEEEEEEETTTTEEEEE
T ss_pred eeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc--ceeeeeecCCCCeEEEE
Confidence 999986 566554 479999999999887665433322 23333566677666654
No 99
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.2e-25 Score=233.24 Aligned_cols=228 Identities=14% Similarity=0.092 Sum_probs=173.9
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC---CCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP---LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~---~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..|.+ .|.+++|+|++ .+|++|+.||.|+|||+. .++....+..+ .+..+..
T Consensus 108 ~~h~~-~v~~~~~~~~~----------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--------------~i~~~~~ 162 (437)
T 3gre_A 108 YDCSS-TVTQITMIPNF----------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--------------CIRKINL 162 (437)
T ss_dssp EECSS-CEEEEEECTTS----------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--------------EEEEEEG
T ss_pred ccCCC-CEEEEEEeCCC----------CEEEEEeCCCEEEEEEeccccCCceeeccccc--------------eeEEEEc
Confidence 46888 55599999998 799999999999999995 55555544221 1111111
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
...++...+ .++.+.+.+++.+|++|+.||+|++||+++. .++..+.+ |...|.+++|+|++ .+|
T Consensus 163 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~h~~~v~~~~~s~~~------~~l 229 (437)
T 3gre_A 163 KNFGKNEYA-VRMRAFVNEEKSLLVALTNLSRVIIFDIRTL------ERLQIIENSPRHGAVSSICIDEEC------CVL 229 (437)
T ss_dssp GGGSSCCCE-EEEEEEECSSCEEEEEEETTSEEEEEETTTC------CEEEEEECCGGGCCEEEEEECTTS------CEE
T ss_pred cCcccccCc-eEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC------eeeEEEccCCCCCceEEEEECCCC------CEE
Confidence 111255666 8888665688999999999999999999876 78888888 89999999999998 899
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeC-CCCCCeEEEEEcC----CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc-
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLP----DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT- 323 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp----~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~- 323 (568)
++|+.|+ |++||++.. .++..+. .|...|++++|+| ++.+|++++.||.|++||++. ++.+...
T Consensus 230 ~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~--------~~~~~~~~ 300 (437)
T 3gre_A 230 ILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK--------GHCQYAFI 300 (437)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT--------TEEEEEEE
T ss_pred EEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC--------CcEEEEEE
Confidence 9999999 999999986 7777765 7888999996665 677999999999999999964 2211000
Q ss_pred ---------cccc------eEEEec--CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 324 ---------KQQG------LHLVNC--SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 324 ---------~~~~------l~~~~~--h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
...+ -..+.+ |...|++++|+ ++.+|++++.||.|++||+.++....
T Consensus 301 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 301 NSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp SSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred cCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 0000 001223 77789999999 77999999999999999998776443
No 100
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.6e-24 Score=228.04 Aligned_cols=205 Identities=11% Similarity=0.025 Sum_probs=169.4
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECC--CCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVP--LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~--~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
.+|.+ .|++++|+|++ .+| ++|+.||.|+|||+. ++.++..+..
T Consensus 99 ~~~~~-~v~~~~~s~d~----------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------- 145 (450)
T 2vdu_B 99 PPIYS-YIRNLRLTSDE----------SRLIACADSDKSLLVFDVDKTSKNVLKLRKR---------------------- 145 (450)
T ss_dssp -CCCC-CEEEEEECTTS----------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------------------
T ss_pred CccCC-ceEEEEEcCCC----------CEEEEEECCCCeEEEEECcCCCCceeeeeec----------------------
Confidence 35666 56699999999 675 899999999999999 7777766521
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC---CCCCCCCcE
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA---ESDSDSANV 249 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~---~~~~~~~~~ 249 (568)
..|...| .+++|+ |++.+|++|+.||.|++|++...... ..+...+.+|...|.+++|+|+ + .+
T Consensus 146 --~~~~~~v-~~~~~s--p~~~~l~~~~~~g~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~sp~~~~~------~~ 212 (450)
T 2vdu_B 146 --FCFSKRP-NAISIA--EDDTTVIIADKFGDVYSIDINSIPEE--KFTQEPILGHVSMLTDVHLIKDSDGH------QF 212 (450)
T ss_dssp --EECSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTSCCCS--SCCCCCSEECSSCEEEEEEEECTTSC------EE
T ss_pred --ccCCCCc-eEEEEc--CCCCEEEEEeCCCcEEEEecCCcccc--cccceeeecccCceEEEEEcCCCCCC------cE
Confidence 2456777 999999 88999999999999999999866321 0034467789999999999999 7 89
Q ss_pred EEEEcCCC-EEEEECCCCCcceee-eCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWD-IHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~-~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
|++++.|+ |++||++++ ..+.. +.+|...|++++|+ ++.+|++++.|+.|++||++. |+++
T Consensus 213 l~s~~~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~--------~~~~------- 275 (450)
T 2vdu_B 213 IITSDRDEHIKISHYPQC-FIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKT--------GKNL------- 275 (450)
T ss_dssp EEEEETTSCEEEEEESCT-TCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTT--------CCEE-------
T ss_pred EEEEcCCCcEEEEECCCC-ceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCC--------CcEe-------
Confidence 99999998 999999987 55554 66899999999999 999999999999999999954 4432
Q ss_pred eEEEe-------------------------cCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEc
Q 008363 328 LHLVN-------------------------CSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQL 364 (568)
Q Consensus 328 l~~~~-------------------------~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~ 364 (568)
..+. .+...|.+++|+|++.+|++++ .|+.|++|++
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 276 -STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp -EEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred -eeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 3333 2345799999999999999999 8999999999
No 101
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.93 E-value=4.4e-24 Score=252.37 Aligned_cols=290 Identities=17% Similarity=0.246 Sum_probs=218.6
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------c
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------K 154 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~ 154 (568)
.+..+.+|.+ .|.+++|+|++ .+||+|+.||.|+|||+.+++++..+.+|.. +
T Consensus 649 ~~~~~~~h~~-~v~~~~~s~~~----------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 717 (1249)
T 3sfz_A 649 KLLDIKAHED-EVLCCAFSSDD----------SYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLA 717 (1249)
T ss_dssp EEEEECCCSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEE
T ss_pred EEEEeccCCC-CEEEEEEecCC----------CEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEE
Confidence 4555668988 55599999999 8999999999999999999999888877654 3
Q ss_pred cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCC----------------
Q 008363 155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSS---------------- 216 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~---------------- 216 (568)
.++.++.+++|+..+ +...+.+|...| .+++|+ |++.+|++|+.||+|++||+.+....
T Consensus 718 sg~~d~~v~vwd~~~~~~~~~~~~h~~~v-~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~ 794 (1249)
T 3sfz_A 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSV-NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPP 794 (1249)
T ss_dssp EEETTSCEEEEETTSSSEEEEECCCSSCE-EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-------
T ss_pred EEeCCCeEEEEECCCcchhheecCCCCCE-EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCcc
Confidence 567788899999876 556677999999 999999 88999999999999999998754210
Q ss_pred --------------------------------CCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 217 --------------------------------IDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 217 --------------------------------~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
.....+.. ..+|...|.+++|+|++ .++++++.++ |++||
T Consensus 795 ~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~------~~l~~~~~dg~v~vwd 868 (1249)
T 3sfz_A 795 EDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD------HLAVIALSQYCVELWN 868 (1249)
T ss_dssp -CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST------TEEEEECSSSCEEEEE
T ss_pred ccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC------CEEEEEeCCCeEEEEE
Confidence 00011112 23788999999999999 8999999999 99999
Q ss_pred CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC-C------------ccCccccceE
Q 008363 263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK-P------------FAGTKQQGLH 329 (568)
Q Consensus 263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~-~------------~~~~~~~~l~ 329 (568)
+.+. ..+..+.+|...|++++|+|++.+|++++.||.|++||+............ . +.......+.
T Consensus 869 ~~~~-~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1249)
T 3sfz_A 869 IDSR-LKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQ 947 (1249)
T ss_dssp TTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEE
T ss_pred cCCC-ceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceE
Confidence 9987 888889999999999999999999999999999999998642110000000 0 0000000001
Q ss_pred --------EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCC
Q 008363 330 --------LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDN 401 (568)
Q Consensus 330 --------~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~ 401 (568)
....+...|.+++|+|++.++++++.||.|++|++.++........+. ..+.+..+++++..+++++....
T Consensus 948 ~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 948 LIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK-KAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp EEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS-SCCCCEEECSSSSCEEEECSSSB
T ss_pred EEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC-CceEEEEECCCCCEEEEEcCCCE
Confidence 112245679999999999999999999999999998876655433222 23445567888888877654443
Q ss_pred C
Q 008363 402 T 402 (568)
Q Consensus 402 ~ 402 (568)
+
T Consensus 1027 i 1027 (1249)
T 3sfz_A 1027 I 1027 (1249)
T ss_dssp E
T ss_pred E
Confidence 3
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2.6e-25 Score=229.87 Aligned_cols=242 Identities=11% Similarity=0.086 Sum_probs=165.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC------CCCCEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS------PPHDYL 196 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~------~~g~~l 196 (568)
.+||+++.|++|+|||+.++++.... ....+.||...| .+|+|+|. .++++|
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~~~~---------------------~~~~~~gH~~~v-~~v~~~p~~~~~~~~d~~~l 159 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETIITQH---------------------VLGGKSGHHNFV-NDIDIADVYSADNRLAEQVI 159 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEEEEE---------------------EECTTTSCSSCE-EEEEEEEEECTTCSEEEEEE
T ss_pred CEEEEEeCCCcEEEEECCCCccceee---------------------eecccCCCCCce-EEEEEccccccccCCCCCEE
Confidence 68999999999999999987654321 112338999999 99999952 267899
Q ss_pred EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce-----
Q 008363 197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL----- 270 (568)
Q Consensus 197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~----- 270 (568)
|+|+.|++|+|||+.+. .++..+..|...|.+++|+|++ ..+|++++.|+ |++||++++....
T Consensus 160 as~s~D~tv~~Wd~~~~------~~~~~~~~~~~~v~~v~~~p~~-----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 160 ASVGDDCTLIIWRLTDE------GPILAGYPLSSPGISVQFRPSN-----PNQLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp EEEETTSEEEEEEEETT------EEEEEEEECSSCEEEEEEETTE-----EEEEEEEETTSEEEEEETTCCC--------
T ss_pred EEEECCCeEEEEECCCC------ceeeeecCCCCCcEEEEECCCC-----CceEEecCCCCEEEEEECCCCccccccccc
Confidence 99999999999999866 6777777899999999999987 26899999999 9999998763211
Q ss_pred -------------------eeeCCCCCCeEEEEEc-CCCCEEEEEeCCCcEEEEEccccccCCCCC---CCCccCccccc
Q 008363 271 -------------------WDIHPAPKFIYGLDWL-PDPGCVILSFDDGAMRIVSLLKAAYDVPAT---GKPFAGTKQQG 327 (568)
Q Consensus 271 -------------------~~~~~h~~~i~~l~~s-p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~---g~~~~~~~~~~ 327 (568)
....+|...+.++.|+ |++..|++++.|++|++||+.......... +..........
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCS
T ss_pred CCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccc
Confidence 1123677888899987 799999999999999999996422110000 00000000001
Q ss_pred eEEEecCCCCEEEEEEecC--CCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccC
Q 008363 328 LHLVNCSSFAIWSVQVSRL--TGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~--~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
......+...+ ...|+|. +.++++|+.||.|++||+.++........+.. .+.+.+++++|..|++.+..
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 309 VQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp EEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEESS
T ss_pred cccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeCC
Confidence 11222222222 2334442 34677888999999999988765443332222 35567899999999887643
No 103
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.93 E-value=1e-23 Score=209.90 Aligned_cols=246 Identities=15% Similarity=0.215 Sum_probs=188.0
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
..|+||+++ +||+|. |++|+|||+.+++++..+.. .+|...| +
T Consensus 29 ~~l~WS~~~-----------~lAvg~-D~tV~iWd~~tg~~~~~~~~------------------------~~~~~~V-~ 71 (318)
T 4ggc_A 29 NLVDWSSGN-----------VLAVAL-DNSVYLWSASSGDILQLLQM------------------------EQPGEYI-S 71 (318)
T ss_dssp BCEEECTTS-----------EEEEEE-TTEEEEEETTTCCEEEEEEC------------------------CSTTCCE-E
T ss_pred eEEEECCCC-----------EEEEEe-CCEEEEEECCCCCEEEEEEe------------------------cCCCCeE-E
Confidence 368999875 788775 89999999999988876622 5788889 9
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWD 262 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD 262 (568)
+++|+ |++++|++|+.||+|++||+.++ +++..+.+|...+.++.+. + .++++++.++ +++|+
T Consensus 72 ~v~~~--~~~~~l~sgs~Dg~v~iw~~~~~------~~~~~~~~h~~~~~~~~~~--~------~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 72 SVAWI--KEGNYLAVGTSSAEVQLWDVQQQ------KRLRNMTSHSARVGSLSWN--S------YILSSGSRSGHIHHHD 135 (318)
T ss_dssp EEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEEE--T------TEEEEEETTSEEEEEE
T ss_pred EEEEC--CCCCEEEEEECCCcEEEeecCCc------eeEEEecCccceEEEeecC--C------CEEEEEecCCceEeee
Confidence 99999 88999999999999999999977 8899999999998876654 4 6899999999 99999
Q ss_pred CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC-------------------CCCCCc---
Q 008363 263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP-------------------ATGKPF--- 320 (568)
Q Consensus 263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~-------------------~~g~~~--- 320 (568)
.......+..+.+|...+..+.|++++++|++++.|+.|++||++....... ..+..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 215 (318)
T 4ggc_A 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215 (318)
T ss_dssp TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEE
T ss_pred cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEE
Confidence 9988777788889999999999999999999999999999999975321100 000000
Q ss_pred cC----------ccccceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363 321 AG----------TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 321 ~~----------~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
.+ ...........+...+..+.|+|.+..+++++ .|+.|++||+.++........+. ..+.+.++++
T Consensus 216 ~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~-~~V~~l~~sp 294 (318)
T 4ggc_A 216 GGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT-SRVLSLTMSP 294 (318)
T ss_dssp ECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS-SCEEEEEECT
T ss_pred ecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC-CCEEEEEEcC
Confidence 00 00001112234556788888999887777655 78999999998887766544433 3455667888
Q ss_pred CCCceEEcccCCCCC
Q 008363 389 DESAITVNTPLDNTP 403 (568)
Q Consensus 389 ~~~~i~~~~~~~~~~ 403 (568)
++..|+.++....+.
T Consensus 295 dg~~l~S~s~D~~v~ 309 (318)
T 4ggc_A 295 DGATVASAAADETLR 309 (318)
T ss_dssp TSSCEEEEETTTEEE
T ss_pred CCCEEEEEecCCeEE
Confidence 888888776655543
No 104
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=2e-24 Score=235.39 Aligned_cols=236 Identities=17% Similarity=0.143 Sum_probs=191.7
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
.|.+ .+.+++|+|++ .+||+++ ++.|+||++.++ +....+
T Consensus 16 ~~~~-~v~~~~~spdg----------~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~------------------------ 59 (615)
T 1pgu_A 16 TQRN-FTTHLSYDPTT----------NAIAYPC-GKSAFVRCLDDGDSKVPPVVQF------------------------ 59 (615)
T ss_dssp CCTT-CCCCCEEETTT----------TEEEEEE-TTEEEEEECCSSCCSSCSEEEE------------------------
T ss_pred CccC-ceeEEEECCCC----------CEEEEec-CCeEEEEECCCCCCccccceEE------------------------
Confidence 5666 44599999999 7999988 789999999987 666665
Q ss_pred cccCCcCc-cceEEEEccCC--CCCEEEEEeCCCeEEEEEccCCCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 173 LKCGGTQS-IPLTMEWSTSP--PHDYLLAGCHDGTVALWKFVASDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 173 ~~~~h~~~-V~~~v~~s~~~--~g~~l~sgs~Dg~I~iwd~~~~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+|... | ++++|+ | ++.+|++|+.||+|+|||+.++... .....+..+..|...|.+++|+|++
T Consensus 60 --~~h~~~~v-~~~~~s--p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------ 128 (615)
T 1pgu_A 60 --TGHGSSVV-TTVKFS--PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEG------ 128 (615)
T ss_dssp --CTTTTSCE-EEEEEC--SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTS------
T ss_pred --ecCCCceE-EEEEEC--cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCC------
Confidence 789999 9 999999 7 8999999999999999999632000 0015677888999999999999999
Q ss_pred cEEEEEcCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 248 NVILTAGHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 248 ~~las~s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
.+|++++.+ + |++||. . ..+..+.+|...|++++|+|++. .|++++.|+.|++||++. +
T Consensus 129 ~~l~~~~~~~~~~~~v~~~d~--~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--------~---- 193 (615)
T 1pgu_A 129 RRLCVVGEGRDNFGVFISWDS--G-NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--------F---- 193 (615)
T ss_dssp SEEEEEECCSSCSEEEEETTT--C-CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT--------B----
T ss_pred CEEEEeccCCCCccEEEEEEC--C-CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC--------c----
Confidence 899999887 6 888883 3 67788889999999999999998 799999999999999843 3
Q ss_pred CccccceEEEecCCC---CEEEEEEecC-CCEEEEEeCCCeEEEEEcCCCeeeccCCC---CCcceeeeecccCCCCceE
Q 008363 322 GTKQQGLHLVNCSSF---AIWSVQVSRL-TGMVAYCSADGTVHRFQLTAKAVEKDHSR---NRPMHFLCGSVTEDESAIT 394 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~---~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~---~~~~~~~~~s~~~~~~~i~ 394 (568)
+.+..+.+|.. .|++++|+|+ +.+|++++.||.|++||+.++........ .....+.+..++ ++..+.
T Consensus 194 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~ 268 (615)
T 1pgu_A 194 ----KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFA 268 (615)
T ss_dssp ----EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEE
T ss_pred ----ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEE
Confidence 33468888999 9999999999 99999999999999999998876665422 222334455666 777776
Q ss_pred EcccC
Q 008363 395 VNTPL 399 (568)
Q Consensus 395 ~~~~~ 399 (568)
++...
T Consensus 269 ~~~~d 273 (615)
T 1pgu_A 269 TVGAD 273 (615)
T ss_dssp EEETT
T ss_pred EEcCC
Confidence 65443
No 105
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.93 E-value=3.8e-24 Score=217.93 Aligned_cols=209 Identities=11% Similarity=0.077 Sum_probs=155.3
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
....|.+ .|++++|+|++ .+||+|+.+| ++||++.++......
T Consensus 14 ~~~~h~~-~V~~v~fs~dg----------~~la~g~~~~-~~iw~~~~~~~~~~~------------------------- 56 (355)
T 3vu4_A 14 PENHVSN-PVTDYEFNQDQ----------SCLILSTLKS-FEIYNVHPVAHIMSQ------------------------- 56 (355)
T ss_dssp -----CC-CCCEEEECTTS----------SEEEEECSSE-EEEEEETTEEEEEEE-------------------------
T ss_pred ccccCCC-ceEEEEECCCC----------CEEEEEcCCE-EEEEecCCcceeeee-------------------------
Confidence 3467877 55599999999 7999988775 789999876544332
Q ss_pred ccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC----C-----
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES----D----- 243 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~----~----- 243 (568)
. ...+ ..++|. ++++.+ ++|+.|++|+|||+.++ +++..+. |...|.+++|+++.- +
T Consensus 57 -~--~~~~-~~~~~~--~~~~~~~~~~~~d~~v~iWd~~~~------~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i 123 (355)
T 3vu4_A 57 -E--MRHL-SKVRML--HRTNYVAFVTGVKEVVHIWDDVKK------QDVSRIK-VDAPVKDLFLSREFIVVSYGDVISV 123 (355)
T ss_dssp -E--CSCC-CEEEEC--TTSSEEEEECSSTTEEEEEETTTT------EEEEEEE-CSSCEEEEEECSSEEEEEETTEEEE
T ss_pred -e--cCCe-EEEEEc--CCCCEEEEEECCccEEEEEECCCC------cEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEE
Confidence 1 1134 667777 445555 67788899999999876 6777775 666888888887530 0
Q ss_pred --CCCC------------------cEEEE--EcCCC-EEEEECCCCC--------------cc-eeeeCCCCCCeEEEEE
Q 008363 244 --SDSA------------------NVILT--AGHGG-LKFWDIRDPF--------------RP-LWDIHPAPKFIYGLDW 285 (568)
Q Consensus 244 --~~~~------------------~~las--~s~d~-v~lwD~~~~~--------------~~-~~~~~~h~~~i~~l~~ 285 (568)
-... .+++. |+.++ |++||+.+.. .+ +..+.+|.+.|++++|
T Consensus 124 ~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~ 203 (355)
T 3vu4_A 124 FKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRL 203 (355)
T ss_dssp EESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEE
T ss_pred EECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEE
Confidence 0000 23444 46677 9999998752 12 6788899999999999
Q ss_pred cCCCCEEEEEeCCCc-EEEEEccccccCCCCCCCCccCccccceEEEe-c-CCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 286 LPDPGCVILSFDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-C-SSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 286 sp~~~~l~s~~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
+|++++|++++.|++ |+|||+++ +++ +..+. + |...|++++|+|++.+|++++.|++|++|
T Consensus 204 s~~g~~l~s~s~d~~~v~iwd~~~--------~~~--------~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 204 NRKSDMVATCSQDGTIIRVFKTED--------GVL--------VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVF 267 (355)
T ss_dssp CTTSSEEEEEETTCSEEEEEETTT--------CCE--------EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEECCC--------CcE--------EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEE
Confidence 999999999999998 99999953 533 46777 5 99999999999999999999999999999
Q ss_pred EcCCCe
Q 008363 363 QLTAKA 368 (568)
Q Consensus 363 d~~~~~ 368 (568)
|+....
T Consensus 268 ~~~~~~ 273 (355)
T 3vu4_A 268 EIFNDQ 273 (355)
T ss_dssp ESSCCS
T ss_pred EccCCC
Confidence 997653
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8.6e-25 Score=244.86 Aligned_cols=214 Identities=19% Similarity=0.318 Sum_probs=178.3
Q ss_pred EEEeeccCCceeeEEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCc--eeeEEeccCCccCCCCceEEEeec
Q 008363 92 VVLCLAHNGKVAWDVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR--TMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~--~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
+..+.+|.+ .|++++|+|+ + .+|++|+.||.|+|||+.++. .+..+
T Consensus 46 ~~~l~~h~~-~V~~l~~s~~~~~----------~~l~s~s~Dg~I~vwd~~~~~~~~~~~~------------------- 95 (753)
T 3jro_A 46 IDTLTGHEG-PVWRVDWAHPKFG----------TILASCSYDGKVLIWKEENGRWSQIAVH------------------- 95 (753)
T ss_dssp EEEECCCSS-CEEEEEECCTTSC----------SEEEEEETTSCEEEEEEETTEEEEEEEE-------------------
T ss_pred ceeccCCcC-ceEEEEecCCCCC----------CEEEEEeCCCeEEEEECCCCcccccccc-------------------
Confidence 445568988 5569999988 6 799999999999999999865 33333
Q ss_pred ceecccccCCcCccceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccC-----
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPA----- 240 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~----- 240 (568)
.+|...| ++++|+ |+ +.+|++|+.||+|++||+..... .....+.+|...|.+++|+|.
T Consensus 96 -------~~h~~~V-~~v~~s--p~~~~~~l~sgs~dg~I~vwdl~~~~~----~~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 96 -------AVHSASV-NSVQWA--PHEYGPLLLVASSDGKVSVVEFKENGT----TSPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp -------CCCSSCE-EEEEEC--CGGGCSEEEEEETTSEEEEEECCSSSC----CCCEEEECCSSCEEEEEECCCC----
T ss_pred -------cCCCCCe-EEEEEC--CCCCCCEEEEEeCCCcEEEEEeecCCC----cceeEeecCCCceEEEEecCcccccc
Confidence 7788999 999999 66 89999999999999999987632 455677899999999999994
Q ss_pred --------CCCCCCCcEEEEEcCCC-EEEEECCCCC---cceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEE
Q 008363 241 --------ESDSDSANVILTAGHGG-LKFWDIRDPF---RPLWDIHPAPKFIYGLDWLPD---PGCVILSFDDGAMRIVS 305 (568)
Q Consensus 241 --------~~~~~~~~~las~s~d~-v~lwD~~~~~---~~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd 305 (568)
+ .+|++|+.|+ |++||+++.. .+...+.+|...|++++|+|+ +.+|++++.||.|++||
T Consensus 162 ~~~~~~~d~------~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 162 GEHNGTKES------RKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp -----CGGG------CCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred cccccCCCC------CEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5 7999999999 9999998764 344677899999999999999 89999999999999999
Q ss_pred ccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 306 LLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
++... +... ..+.....|...|++++|+|++.+|++++.||.|++|++.+
T Consensus 236 ~~~~~------~~~~-----~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 236 QDNEQ------GPWK-----KTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ESSSS------SCCB-----CCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCCC------Ccce-----eEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 96522 1110 11223456889999999999999999999999999999974
No 107
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.3e-24 Score=224.01 Aligned_cols=226 Identities=9% Similarity=-0.018 Sum_probs=169.8
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc---eeeEEeccCCc----------------c-CCCC-ce
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR---TMKAIYLSSMK----------------E-GTDP-RF 161 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~---~~~~l~~~~~~----------------~-~~~~-~~ 161 (568)
+.+++|+|++ ++|+++ .++.|++||+.+++ .+..+..+... . ...+ ..
T Consensus 7 ~~~v~~s~dg----------~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 7 LQNLLTSRDG----------SLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp CCEEEECSSS----------SEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred EEEEEecCCC----------CEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence 3488999999 766655 57899999999988 66665433210 0 0000 00
Q ss_pred E----------EEeecceecccccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEcc--CCCCCCCCceeEEee--
Q 008363 162 V----------KLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFV--ASDSSIDSRPLLCFS-- 226 (568)
Q Consensus 162 v----------~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~--~~~~~~~~~~~~~~~-- 226 (568)
. ..+..........+|...| ++++|+ |++.+| ++|+.||+|+|||+. .+ .++..+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s--~d~~~l~~~~~~dg~v~iwd~~~~~~------~~~~~~~~~ 146 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYI-RNLRLT--SDESRLIACADSDKSLLVFDVDKTSK------NVLKLRKRF 146 (450)
T ss_dssp ------------------------CCCCCE-EEEEEC--TTSSEEEEEEGGGTEEEEEEECSSSS------SCEEEEEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCce-EEEEEc--CCCCEEEEEECCCCeEEEEECcCCCC------ceeeeeecc
Confidence 0 0000000011123677788 999999 889886 899999999999998 55 5566664
Q ss_pred CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCc---ceeeeCCCCCCeEEEEEcCC---CCEEEEEeCCC
Q 008363 227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFR---PLWDIHPAPKFIYGLDWLPD---PGCVILSFDDG 299 (568)
Q Consensus 227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~---~~~~~~~h~~~i~~l~~sp~---~~~l~s~~~dg 299 (568)
.|...|.+++|+|++ .+|++++.++ |++||+.+... +...+.+|...|++++|+|+ +++|++++.|+
T Consensus 147 ~~~~~v~~~~~sp~~------~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~ 220 (450)
T 2vdu_B 147 CFSKRPNAISIAEDD------TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDE 220 (450)
T ss_dssp ECSSCEEEEEECTTS------SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTS
T ss_pred cCCCCceEEEEcCCC------CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCC
Confidence 677899999999999 8999999999 99999987632 33366789999999999999 99999999999
Q ss_pred cEEEEEccccccCCCCCCCCccCccccceEE-EecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 300 AMRIVSLLKAAYDVPATGKPFAGTKQQGLHL-VNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 300 ~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~-~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.|++||++. ++. +.. +.+|...|++++|+ ++.+|++++.|+.|++||+.++....
T Consensus 221 ~i~vwd~~~--------~~~--------~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~ 276 (450)
T 2vdu_B 221 HIKISHYPQ--------CFI--------VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLS 276 (450)
T ss_dssp CEEEEEESC--------TTC--------EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEE
T ss_pred cEEEEECCC--------Cce--------eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEee
Confidence 999999953 433 234 56899999999999 99999999999999999999876543
No 108
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.93 E-value=7.1e-24 Score=231.08 Aligned_cols=212 Identities=19% Similarity=0.198 Sum_probs=181.9
Q ss_pred eEEEeeccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCC--------ceeeEEeccCCccCCCCc
Q 008363 91 RVVLCLAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL--------RTMKAIYLSSMKEGTDPR 160 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~--------~~~~~l~~~~~~~~~~~~ 160 (568)
.+..+.+|.+..|.+++|+| ++ .+||+|+.||.|+|||+.++ ..+..+
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~----------~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~------------ 112 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGS----------QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEF------------ 112 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTC----------CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEE------------
T ss_pred cceEEecCCCceEEEEEECcCCCC----------CEEEEecCCCEEEEEeCCCCcccccccccccchh------------
Confidence 45556789985166999999 99 89999999999999999754 333332
Q ss_pred eEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE
Q 008363 161 FVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 161 ~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
.+|...| .+++|+ |++.+|++++.+ +.|.+||. + ..+..+.+|...|.+++
T Consensus 113 --------------~~~~~~v-~~~~~s--~~~~~l~~~~~~~~~~~~v~~~d~--~------~~~~~~~~~~~~v~~~~ 167 (615)
T 1pgu_A 113 --------------QVLAGPI-SDISWD--FEGRRLCVVGEGRDNFGVFISWDS--G------NSLGEVSGHSQRINACH 167 (615)
T ss_dssp --------------ECCSSCE-EEEEEC--TTSSEEEEEECCSSCSEEEEETTT--C------CEEEECCSCSSCEEEEE
T ss_pred --------------hcccccE-EEEEEe--CCCCEEEEeccCCCCccEEEEEEC--C------CcceeeecCCccEEEEE
Confidence 6788888 999999 889999999988 78999983 3 67888999999999999
Q ss_pred EccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCC---CeEEEEEcCC-CCEEEEEeCCCcEEEEEcccccc
Q 008363 237 WAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPK---FIYGLDWLPD-PGCVILSFDDGAMRIVSLLKAAY 311 (568)
Q Consensus 237 ~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~---~i~~l~~sp~-~~~l~s~~~dg~I~lwd~~~~~~ 311 (568)
|+|++ +.+|++++.|+ |++||+.+. ..+..+.+|.. .|++++|+|+ +++|++++.||.|++||++.
T Consensus 168 ~~~~~-----~~~l~~~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--- 238 (615)
T 1pgu_A 168 LKQSR-----PMRSMTVGDDGSVVFYQGPPF-KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS--- 238 (615)
T ss_dssp ECSSS-----SCEEEEEETTTEEEEEETTTB-EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT---
T ss_pred ECCCC-----CcEEEEEeCCCcEEEEeCCCc-ceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC---
Confidence 99998 23899999999 999999877 78888889999 9999999999 99999999999999999953
Q ss_pred CCCCCCCCccCccccceEEE-e---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 312 DVPATGKPFAGTKQQGLHLV-N---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~-~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
++. +..+ . .|...|.+++|+ ++.+|++++.||.|++||+.++.....
T Consensus 239 -----~~~--------~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~ 289 (615)
T 1pgu_A 239 -----GEF--------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQK 289 (615)
T ss_dssp -----CCE--------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred -----CCE--------eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 433 3566 5 899999999999 999999999999999999998766544
No 109
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.92 E-value=2e-23 Score=235.69 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=196.0
Q ss_pred eEEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC--------------ccC
Q 008363 91 RVVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM--------------KEG 156 (568)
Q Consensus 91 ~~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~--------------~~~ 156 (568)
.+..+.+|.+ .|.+++|+|++ .+|++|+.||.|+|||+.+++.+..+.+|.. +.+
T Consensus 47 ~~~~~~~~~~-~v~~~~~s~~~----------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 115 (814)
T 3mkq_A 47 EVRSIQVTET-PVRAGKFIARK----------NWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115 (814)
T ss_dssp EEEEEECCSS-CEEEEEEEGGG----------TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEE
T ss_pred eEEEEecCCC-cEEEEEEeCCC----------CEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEE
Confidence 3444567888 55599999999 7999999999999999999998888877655 456
Q ss_pred CCCceEEEeecce---ecccccCCcCccceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCC
Q 008363 157 TDPRFVKLEPVFR---CSMLKCGGTQSIPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLP 231 (568)
Q Consensus 157 ~~~~~v~~~~~~~---~~~~~~~h~~~V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~ 231 (568)
+.++.+++|+... +.....+|...| .+++|+ | ++..|++|+.||+|++||+... .....+..| ...
T Consensus 116 ~~dg~i~vw~~~~~~~~~~~~~~~~~~v-~~~~~~--p~~~~~l~~~~~dg~v~vwd~~~~------~~~~~~~~~~~~~ 186 (814)
T 3mkq_A 116 SDDLTVKLWNWENNWALEQTFEGHEHFV-MCVAFN--PKDPSTFASGCLDRTVKVWSLGQS------TPNFTLTTGQERG 186 (814)
T ss_dssp ETTSEEEEEEGGGTSEEEEEEECCSSCE-EEEEEE--TTEEEEEEEEETTSEEEEEETTCS------SCSEEEECCCTTC
T ss_pred cCCCEEEEEECCCCceEEEEEcCCCCcE-EEEEEE--cCCCCEEEEEeCCCeEEEEECCCC------cceeEEecCCCCC
Confidence 7888999999764 445667899999 999999 6 6789999999999999999866 455555544 488
Q ss_pred eeEEEEcc--CCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 232 IRAVSWAP--AESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 232 V~~v~~~p--~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
|.+++|+| ++ .+|++++.|+ |++||++++ .++..+.+|...|++++|+|++.+|++++.||.|++||+..
T Consensus 187 v~~~~~~~~~~~------~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 187 VNYVDYYPLPDK------PYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp CCEEEECCSTTC------CEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred EEEEEEEECCCC------CEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999 77 8999999999 999999987 77888889999999999999999999999999999999943
Q ss_pred cccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCC
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~ 366 (568)
++. +..+..|...|++++|+|++. .+++++.|+.+.+|++..
T Consensus 260 --------~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 260 --------YKV--------EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp --------CSE--------EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred --------CcE--------EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 433 468888999999999999985 335555577889998754
No 110
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=220.60 Aligned_cols=241 Identities=12% Similarity=0.139 Sum_probs=177.0
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
..|.. .|++++|+|+| .+||+++.||.|+|||... ++..+ .
T Consensus 82 ~~~~~-~V~~vawSPdG----------~~LAs~s~dg~V~iwd~~~--~l~~l--------------------------~ 122 (588)
T 2j04_A 82 SQPVC-YPRVCKPSPID----------DWMAVLSNNGNVSVFKDNK--MLTNL--------------------------D 122 (588)
T ss_dssp TSCSC-CEEEEEECSSS----------SCEEEEETTSCEEEEETTE--EEEEC--------------------------C
T ss_pred cCCCC-cEEEEEECCCC----------CEEEEEeCCCcEEEEeCCc--eeeec--------------------------c
Confidence 35644 67799999999 8999999999999999654 44333 3
Q ss_pred CCcC-----ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCC-CCceeEEe----eCCCCCeeEEEEccCCCCCC
Q 008363 176 GGTQ-----SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSI-DSRPLLCF----SADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 176 ~h~~-----~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~-~~~~~~~~----~~h~~~V~~v~~~p~~~~~~ 245 (568)
|.. .+ .+++|+ |+|++||+|+.||+|+|||+..+.... ....+.++ .+|...|.+++|+|+
T Consensus 123 -~~~~~~~~sv-~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd----- 193 (588)
T 2j04_A 123 -SKGNLSSRTY-HCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED----- 193 (588)
T ss_dssp -CSSCSTTTCE-EEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-----
T ss_pred -CCCccccccE-EEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-----
Confidence 333 47 899999 899999999999999999998762100 00135665 678889999999998
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCc--ceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFR--PLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~--~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
. +++++.|+ |++||+..... ....+ .+|...|.+++|+ +..|++++ +++|++||+.. ++
T Consensus 194 --g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~--------~~--- 256 (588)
T 2j04_A 194 --V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKN--------YS--- 256 (588)
T ss_dssp --E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTT--------TE---
T ss_pred --c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCC--------Ce---
Confidence 4 67777787 99999987642 23455 4788999999999 68888887 69999999943 22
Q ss_pred CccccceEEEe-cCCCCEEEEEE--ecCCCEEEEEeCCCeEEEEEcCCCeeeccC---------------C---C---CC
Q 008363 322 GTKQQGLHLVN-CSSFAIWSVQV--SRLTGMVAYCSADGTVHRFQLTAKAVEKDH---------------S---R---NR 377 (568)
Q Consensus 322 ~~~~~~l~~~~-~h~~~V~~l~~--sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~---------------~---~---~~ 377 (568)
+..+. +|...|+.++| +|++..|++++.||+ ++|.+..-.+..+. . . ..
T Consensus 257 ------~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~ 329 (588)
T 2j04_A 257 ------ISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET 329 (588)
T ss_dssp ------EEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC
T ss_pred ------EEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeecc
Confidence 22333 89999999999 999999999999999 99997422111000 0 0 00
Q ss_pred cceeeeecccCCCCceEEcccCCCCCccccc
Q 008363 378 PMHFLCGSVTEDESAITVNTPLDNTPVPLKK 408 (568)
Q Consensus 378 ~~~~~~~s~~~~~~~i~~~~~~~~~~~~~k~ 408 (568)
...+.+.+++++|..+++....+...+.++.
T Consensus 330 ~~~I~~va~SPdG~~lA~~~~i~~~~~~y~i 360 (588)
T 2j04_A 330 TLVIHGISLSPDGYSIAIVYDMERVAFKYKI 360 (588)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEECSSCCCCC
T ss_pred ceEEEEEEECCCCCEEEEEEeccCceeEEee
Confidence 1124567899999998886655444344433
No 111
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.92 E-value=4.7e-24 Score=216.45 Aligned_cols=209 Identities=14% Similarity=0.226 Sum_probs=166.2
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
....+|.+ .|.+++|+|++ .+|++++.||.|+|||+.+++.+..
T Consensus 80 ~~~~~h~~-~v~~~~~~~~~----------~~l~s~~~dg~v~iwd~~~~~~~~~------------------------- 123 (368)
T 3mmy_A 80 KAQQMHTG-PVLDVCWSDDG----------SKVFTASCDKTAKMWDLSSNQAIQI------------------------- 123 (368)
T ss_dssp EEEEECSS-CEEEEEECTTS----------SEEEEEETTSEEEEEETTTTEEEEE-------------------------
T ss_pred EEeccccC-CEEEEEECcCC----------CEEEEEcCCCcEEEEEcCCCCceee-------------------------
Confidence 45667888 55599999999 7999999999999999999776643
Q ss_pred cccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-----------------------
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT----------------------- 229 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----------------------- 229 (568)
.+|...| .+++|++.+++.+|++|+.||.|++||+.+. +++..+..|.
T Consensus 124 --~~~~~~v-~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 194 (368)
T 3mmy_A 124 --AQHDAPV-KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS------NPMMVLQLPERCYCADVIYPMAVVATAERGLIV 194 (368)
T ss_dssp --EECSSCE-EEEEEEECSSCEEEEEEETTSEEEEECSSCS------SCSEEEECSSCEEEEEEETTEEEEEEGGGCEEE
T ss_pred --ccccCce-EEEEEEeCCCCCEEEEccCCCcEEEEECCCC------cEEEEEecCCCceEEEecCCeeEEEeCCCcEEE
Confidence 5688888 9999955589999999999999999999876 3334333322
Q ss_pred ------------------CCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--cceeeeCCCCC----------
Q 008363 230 ------------------LPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--RPLWDIHPAPK---------- 278 (568)
Q Consensus 230 ------------------~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--~~~~~~~~h~~---------- 278 (568)
..+.++.+.+.. ...+..+++++.|+ |++||++... ..+..+..|..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (368)
T 3mmy_A 195 YQLENQPSEFRRIESPLKHQHRCVAIFKDK--QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQD 272 (368)
T ss_dssp EECSSSCEEEEECCCSCSSCEEEEEEEECT--TSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEE
T ss_pred EEeccccchhhhccccccCCCceEEEcccC--CCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccccccc
Confidence 334455555443 11234499999999 9999999764 34566667765
Q ss_pred --CeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC
Q 008363 279 --FIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD 356 (568)
Q Consensus 279 --~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D 356 (568)
.|++++|+|++++|++++.||.|++||++. + .++..+.+|...|++++|+|++.+|++++.|
T Consensus 273 ~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~--------~--------~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d 336 (368)
T 3mmy_A 273 IYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA--------R--------TKLKTSEQLDQPISACCFNHNGNIFAYASSY 336 (368)
T ss_dssp ECCEEEEEECTTTCCEEEEETTSCEEEEETTT--------T--------EEEEECCCCSSCEEEEEECTTSSCEEEEECC
T ss_pred ccceEEEEEecCCCEEEEEccCCeEEEEECCC--------C--------cEEEEecCCCCCceEEEECCCCCeEEEEecc
Confidence 799999999999999999999999999953 4 3346888999999999999999999999999
Q ss_pred CeEEEEEc
Q 008363 357 GTVHRFQL 364 (568)
Q Consensus 357 g~v~iwd~ 364 (568)
+..+.|++
T Consensus 337 ~~~~~~~~ 344 (368)
T 3mmy_A 337 DWSKGHEF 344 (368)
T ss_dssp CSTTCGGG
T ss_pred cccccccc
Confidence 86666554
No 112
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.92 E-value=6.9e-24 Score=219.13 Aligned_cols=206 Identities=12% Similarity=0.134 Sum_probs=144.0
Q ss_pred eeccCCceeeEEEEcc--------CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEee
Q 008363 95 CLAHNGKVAWDVKWKP--------YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEP 166 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp--------~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~ 166 (568)
+.+|.+ .|++|+|+| ++ ++||+|+.|++|+|||+.++.++..+
T Consensus 132 ~~gH~~-~v~~v~~~p~~~~~~~~d~----------~~las~s~D~tv~~Wd~~~~~~~~~~------------------ 182 (393)
T 4gq1_A 132 KSGHHN-FVNDIDIADVYSADNRLAE----------QVIASVGDDCTLIIWRLTDEGPILAG------------------ 182 (393)
T ss_dssp TTSCSS-CEEEEEEEEEECTTCSEEE----------EEEEEEETTSEEEEEEEETTEEEEEE------------------
T ss_pred cCCCCC-ceEEEEEccccccccCCCC----------CEEEEEECCCeEEEEECCCCceeeee------------------
Confidence 457988 566999998 56 79999999999999999887766555
Q ss_pred cceecccccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCC-------------------ceeEEee
Q 008363 167 VFRCSMLKCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDS-------------------RPLLCFS 226 (568)
Q Consensus 167 ~~~~~~~~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~-------------------~~~~~~~ 226 (568)
.+|...| .+++|+ |++ .+|++|+.||+|++||+.++...... .......
T Consensus 183 --------~~~~~~v-~~v~~~--p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 183 --------YPLSSPG-ISVQFR--PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp --------EECSSCE-EEEEEE--TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred --------cCCCCCc-EEEEEC--CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 6677888 999999 665 48999999999999999876431110 0111234
Q ss_pred CCCCCeeEEEEc-cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEE------------------Ec
Q 008363 227 ADTLPIRAVSWA-PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLD------------------WL 286 (568)
Q Consensus 227 ~h~~~V~~v~~~-p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~------------------~s 286 (568)
+|...|.++.|. +++ ..|++++.|+ +++||+... .....+..|...+..+. |+
T Consensus 252 ~~~~~v~~v~~~~~dg------~~l~s~s~d~~i~vwd~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (393)
T 4gq1_A 252 GIASSLANVRWIGSDG------SGILAMCKSGAWLRWNLFAN-NDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPH 324 (393)
T ss_dssp CCSSSCSEEEEETTTT------CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEEC
T ss_pred cccccceeeeeecCCC------CEEEEEeCCCCEEEEECccC-CCCceEeeecCccccEEEccccccccccCcceeEEEc
Confidence 688889999997 677 8999999999 999999876 44444444444333333 33
Q ss_pred C--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 287 P--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 287 p--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
| ++.++++|+.||+|+|||+.. |+.. ..+.+|..+|++|+|+|+|++||+++.|| +.+|.+
T Consensus 325 ~~~~~~~~~sgs~Dg~V~lwd~~~--------~~~~--------~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 325 PRYMDYFATAHSQHGLIQLINTYE--------KDSN--------SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp SSCTTEEEEEETTTTEEEEEETTC--------TTCC--------EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cCCCCEEEEEECCCCEEEEEECCC--------CcEE--------EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 3 334566677899999999943 5443 56778999999999999999999998665 666655
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.91 E-value=1.3e-22 Score=204.24 Aligned_cols=226 Identities=12% Similarity=0.075 Sum_probs=181.4
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEEC-CCCceeeEEec--cCC-------------c
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEV-PLLRTMKAIYL--SSM-------------K 154 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~-~~~~~~~~l~~--~~~-------------~ 154 (568)
+....+|.. .+.+++|+|++ . +|++|+.||.|++||+ .+++. ..+.. |.. +
T Consensus 49 ~~~~~~~~~-~v~~~~~~~~~----------~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~ 116 (342)
T 1yfq_A 49 LLQSLRYKH-PLLCCNFIDNT----------DLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLI 116 (342)
T ss_dssp EEEEEECSS-CEEEEEEEESS----------SEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEE
T ss_pred ceeeeecCC-ceEEEEECCCC----------CcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEE
Confidence 444568888 55599999998 8 9999999999999999 77543 34444 332 4
Q ss_pred cCCCCceEEEeecce---------e--cccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccC-CCCCCCCcee
Q 008363 155 EGTDPRFVKLEPVFR---------C--SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVA-SDSSIDSRPL 222 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~---------~--~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~ 222 (568)
.++.++.+++|+... . .... .|...| .+++|+ +++ |++|+.||.|++||+.. ... ...
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~----~~~ 186 (342)
T 1yfq_A 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNT-KVKNKI-FTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDD----NGT 186 (342)
T ss_dssp EEETTSEEEEECHHHHTTBCEEEEESCSSSS-SSCCCE-EEEEEC--SSE--EEEEESTTEEEEEESSCCTTC----CCE
T ss_pred EEcCCCeEEEEcccccccccccccCCeeeEE-eeCCce-EEEEec--CCc--EEEEeCCCeEEEEECCccccc----cce
Confidence 567888999998764 2 2222 388888 999999 554 99999999999999987 421 234
Q ss_pred EEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC-EEEEECCCC-----CcceeeeCCCCC---------CeEEEEEc
Q 008363 223 LCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG-LKFWDIRDP-----FRPLWDIHPAPK---------FIYGLDWL 286 (568)
Q Consensus 223 ~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~-v~lwD~~~~-----~~~~~~~~~h~~---------~i~~l~~s 286 (568)
.....|...|.+++|+| ++ .+|++++.|+ |++||+... ......+..|.. .|++++|+
T Consensus 187 ~~~~~~~~~i~~i~~~~~~~------~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 260 (342)
T 1yfq_A 187 IEESGLKYQIRDVALLPKEQ------EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp EEECSCSSCEEEEEECSGGG------CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred eeecCCCCceeEEEECCCCC------CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc
Confidence 45567889999999999 88 8999999999 999999876 366677777755 89999999
Q ss_pred CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEecCCCEEEEEeCCCe-EEEEE
Q 008363 287 PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVSRLTGMVAYCSADGT-VHRFQ 363 (568)
Q Consensus 287 p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~~l~s~s~Dg~-v~iwd 363 (568)
|++++|++++.||.|++||++. ++ .+..+.+| ...|++++ |++.+|++++.||+ .+.|.
T Consensus 261 ~~~~~l~~~~~dg~i~vwd~~~--------~~--------~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 261 PRHKFLYTAGSDGIISCWNLQT--------RK--------KIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTT--------TE--------EEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCCCEEEEecCCceEEEEcCcc--------Hh--------HhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999999999999999953 43 34678888 99999999 99999999999998 44443
No 114
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.91 E-value=2.2e-23 Score=218.17 Aligned_cols=218 Identities=14% Similarity=0.135 Sum_probs=161.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
..+|.. .|++++|+|++ .+|++| .||.|+|||+.. +..+..+.. . ...
T Consensus 173 ~~~h~~-~v~~~~~~~~~----------~~l~s~-~d~~i~iwd~~~~~~~~~~~~~--------------~-----~~~ 221 (447)
T 3dw8_B 173 ANAHTY-HINSISINSDY----------ETYLSA-DDLRINLWHLEITDRSFNIVDI--------------K-----PAN 221 (447)
T ss_dssp CSCCSS-CCCEEEECTTS----------SEEEEE-CSSEEEEEETTEEEEEEEEEEC--------------C-----CSS
T ss_pred ccCCCc-ceEEEEEcCCC----------CEEEEe-CCCeEEEEECCCCCceeeeeec--------------c-----ccc
Confidence 357888 55599999999 799998 899999999985 333332200 0 012
Q ss_pred ccCCcCccceEEEEccCCCC-CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC------------CeeEEEEccC
Q 008363 174 KCGGTQSIPLTMEWSTSPPH-DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL------------PIRAVSWAPA 240 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g-~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~------------~V~~v~~~p~ 240 (568)
..+|...| ++++|+ |++ .+|++|+.||+|++||+++... ....+..+.+|.. .|.+++|+|+
T Consensus 222 ~~~~~~~v-~~~~~~--p~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 296 (447)
T 3dw8_B 222 MEELTEVI-TAAEFH--PNSCNTFVYSSSKGTIRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS 296 (447)
T ss_dssp GGGCCCCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTT
T ss_pred ccccCcce-EEEEEC--CCCCcEEEEEeCCCeEEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCC
Confidence 26889999 999999 777 8999999999999999987621 0112677888876 8999999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC---------------eEEEEEcCCCCEEEEEeCCCcEEEE
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF---------------IYGLDWLPDPGCVILSFDDGAMRIV 304 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~---------------i~~l~~sp~~~~l~s~~~dg~I~lw 304 (568)
+ .+|++++. + |++||++....++..+.+|... +..++|+|++.+|++++.||.|++|
T Consensus 297 g------~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iw 369 (447)
T 3dw8_B 297 G------RYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMF 369 (447)
T ss_dssp S------SEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEE
T ss_pred C------CEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEE
Confidence 9 89999999 7 9999999744777777777532 2349999999999999999999999
Q ss_pred EccccccCCCCCCCCccCcc----------ccc-------------eE-EEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 305 SLLKAAYDVPATGKPFAGTK----------QQG-------------LH-LVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~----------~~~-------------l~-~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
|+.. ++.+.-.. ... +. ....+...|..++|+|++.+||+++.++ ++
T Consensus 370 d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~ 440 (447)
T 3dw8_B 370 DRNT--------KRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LY 440 (447)
T ss_dssp ETTT--------CCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EE
T ss_pred EcCC--------CcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-ee
Confidence 9954 22210000 000 00 0012346789999999999999998775 77
Q ss_pred EEEc
Q 008363 361 RFQL 364 (568)
Q Consensus 361 iwd~ 364 (568)
+|..
T Consensus 441 ~~~~ 444 (447)
T 3dw8_B 441 IFQD 444 (447)
T ss_dssp EEEC
T ss_pred eecc
Confidence 7764
No 115
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=1.1e-22 Score=204.09 Aligned_cols=183 Identities=16% Similarity=0.198 Sum_probs=147.7
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc--CCCCCCCCcEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP--AESDSDSANVIL 251 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~~~~~~la 251 (568)
+.+|...| ++++|+ |++.+|++|+.||+|++||+..... .......+.+|...|.+++|+| ++ .+|+
T Consensus 7 ~~gH~~~v-~~~~~~--~~~~~l~~~~~dg~i~iw~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~d~------~~l~ 75 (351)
T 3f3f_A 7 DSGHDDLV-HDVVYD--FYGRHVATCSSDQHIKVFKLDKDTS--NWELSDSWRAHDSSIVAIDWASPEYG------RIIA 75 (351)
T ss_dssp ECCCSSCE-EEEEEC--SSSSEEEEEETTSEEEEEEECSSSC--CEEEEEEEECCSSCEEEEEECCGGGC------SEEE
T ss_pred Ccccccce-eEEEEc--CCCCEEEEeeCCCeEEEEECCCCCC--cceecceeccCCCcEEEEEEcCCCCC------CEEE
Confidence 37899999 999999 8899999999999999999986522 1246677889999999999999 46 8999
Q ss_pred EEcCCC-EEEEECCCCC--------cceeeeCCCCCCeEEEEEcCC--CCEEEEEeCCCcEEEEEccccccCCCC-----
Q 008363 252 TAGHGG-LKFWDIRDPF--------RPLWDIHPAPKFIYGLDWLPD--PGCVILSFDDGAMRIVSLLKAAYDVPA----- 315 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~--------~~~~~~~~h~~~i~~l~~sp~--~~~l~s~~~dg~I~lwd~~~~~~~~~~----- 315 (568)
+++.|+ |++||++... .++..+..|...|++++|+|+ +.+|++++.||.|++||++....-...
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 155 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEE
T ss_pred EEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccc
Confidence 999999 9999998763 446778899999999999999 999999999999999998653311000
Q ss_pred -------------------------CCCCc--------------cCccccceEEEecCCCCEEEEEEecCC----CEEEE
Q 008363 316 -------------------------TGKPF--------------AGTKQQGLHLVNCSSFAIWSVQVSRLT----GMVAY 352 (568)
Q Consensus 316 -------------------------~g~~~--------------~~~~~~~l~~~~~h~~~V~~l~~sp~~----~~l~s 352 (568)
.+..+ .......+..+.+|...|++++|+|++ .+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s 235 (351)
T 3f3f_A 156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT 235 (351)
T ss_dssp EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence 00000 000112355677899999999999998 89999
Q ss_pred EeCCCeEEEEEcCCC
Q 008363 353 CSADGTVHRFQLTAK 367 (568)
Q Consensus 353 ~s~Dg~v~iwd~~~~ 367 (568)
++.||.|++||+..+
T Consensus 236 ~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 236 GCKDGRIRIFKITEK 250 (351)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred EcCCCeEEEEeCCCC
Confidence 999999999999764
No 116
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.8e-22 Score=204.27 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=153.8
Q ss_pred eccCCceeeEEEEcc--CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 96 LAHNGKVAWDVKWKP--YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp--~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+|.+ .|.+++|+| ++ .+|++|+.||+|+|||+.+++++....
T Consensus 122 ~~~~~-~v~~~~~~~~~~~----------~~l~s~s~dg~i~~wd~~~~~~~~~~~------------------------ 166 (343)
T 3lrv_A 122 VDSAN-EIIYMYGHNEVNT----------EYFIWADNRGTIGFQSYEDDSQYIVHS------------------------ 166 (343)
T ss_dssp CCCSS-CEEEEECCC---C----------CEEEEEETTCCEEEEESSSSCEEEEEC------------------------
T ss_pred cCCCC-CEEEEEcCCCCCC----------CEEEEEeCCCcEEEEECCCCcEEEEEe------------------------
Confidence 35666 455999999 88 799999999999999999987754431
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeC-CCCCeeEEEEccCCCCCCCCcEEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSA-DTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..|...+ .+++|+ |++.+|++|+.||+|+|||++++ ..+ ..+.. |.++|.+|+|+|++ .+|+
T Consensus 167 -~~~~~~i-~~~~~~--pdg~~lasg~~dg~i~iwd~~~~------~~~~~~~~~~h~~~v~~l~fs~~g------~~l~ 230 (343)
T 3lrv_A 167 -AKSDVEY-SSGVLH--KDSLLLALYSPDGILDVYNLSSP------DQASSRFPVDEEAKIKEVKFADNG------YWMV 230 (343)
T ss_dssp -CCSSCCC-CEEEEC--TTSCEEEEECTTSCEEEEESSCT------TSCCEECCCCTTSCEEEEEECTTS------SEEE
T ss_pred -cCCCCce-EEEEEC--CCCCEEEEEcCCCEEEEEECCCC------CCCccEEeccCCCCEEEEEEeCCC------CEEE
Confidence 2344567 999999 88999999999999999999977 555 67777 99999999999999 8999
Q ss_pred EEcCCCEEEEECCCCCcceeeeCC---CCCCeE--EEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccc
Q 008363 252 TAGHGGLKFWDIRDPFRPLWDIHP---APKFIY--GLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 252 s~s~d~v~lwD~~~~~~~~~~~~~---h~~~i~--~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
+++++.|++||+++. ..+..+.. |...+. +++|+|++++|++++. |+.|++|++.... +.
T Consensus 231 s~~~~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-------~~------ 296 (343)
T 3lrv_A 231 VECDQTVVCFDLRKD-VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-------KN------ 296 (343)
T ss_dssp EEESSBEEEEETTSS-TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-------CS------
T ss_pred EEeCCeEEEEEcCCC-CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-------cc------
Confidence 999556999999987 44433332 334443 6999999999999988 9999999995411 11
Q ss_pred cceEEEecCCCCEEEEEEec---CCCEEEEEeCCCeEEEEEcC
Q 008363 326 QGLHLVNCSSFAIWSVQVSR---LTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp---~~~~l~s~s~Dg~v~iwd~~ 365 (568)
... .++..++|.+ +...|++++.||.+.++-..
T Consensus 297 ---~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 297 ---WTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp ---EEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred ---eEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 111 5677888998 78899999999999988654
No 117
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.3e-22 Score=230.97 Aligned_cols=251 Identities=12% Similarity=0.098 Sum_probs=171.4
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeE-EeccCCccCCCCceE--EE-------ee
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKA-IYLSSMKEGTDPRFV--KL-------EP 166 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~-l~~~~~~~~~~~~~v--~~-------~~ 166 (568)
.|.+.++ ++.|.++......-......|++++.||.|++|++.++..... ...+.......+.+. .+ |.
T Consensus 340 ~~~~~v~-~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~ 418 (902)
T 2oaj_A 340 PTNVPIV-NILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWL 418 (902)
T ss_dssp SSSSCEE-EEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHH
T ss_pred CCCCceE-EEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHH
Confidence 3555444 8888763100000000114788899999999999987643321 101111111111110 11 10
Q ss_pred c-----ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-Eee-----CCCCCeeEE
Q 008363 167 V-----FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFS-----ADTLPIRAV 235 (568)
Q Consensus 167 ~-----~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~-----~h~~~V~~v 235 (568)
. ......+.||...+ .+++|+ |++++|++|+.||+|++||+..+.... ...+. .+. +|...|.+|
T Consensus 419 ~~~~~~~~~~~~l~G~~~~v-~sv~~s--pdg~~laSgs~DgtVrlWd~~~g~~~~-~~~~~~~l~~~~~~~h~~~V~sv 494 (902)
T 2oaj_A 419 GALSAAQNKDYLLKGGVRTK-RQKLPA--EYGTAFITGHSNGSVRIYDASHGDIQD-NASFEVNLSRTLNKAKELAVDKI 494 (902)
T ss_dssp HHHHTTBCCCCSCCCSBCCC-CCCCCC--SEEEEEEEEETTSEEEEEESSCCTTTT-TBCEEEEHHHHTTCSSSCCEEEE
T ss_pred HHHhcccCCCCcccCCcCCC-Cccccc--ccCcEEEEecCCCcEEEEECCCccccC-CceEEeechhhcCCCCCCceeEE
Confidence 0 01122457888888 889988 889999999999999999998763211 01111 122 899999999
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC--------------------------------------------cce
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPF--------------------------------------------RPL 270 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~--------------------------------------------~~~ 270 (568)
+|+|++ .+||+|+.|+ |+|||+.+.. .++
T Consensus 495 afspdg------~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 568 (902)
T 2oaj_A 495 SFAAET------LELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPS 568 (902)
T ss_dssp EEETTT------TEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEE
T ss_pred EecCCC------CeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcccee
Confidence 999999 8999999999 9999997651 236
Q ss_pred eeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEEEEEe-----
Q 008363 271 WDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWSVQVS----- 344 (568)
Q Consensus 271 ~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~l~~s----- 344 (568)
..+.+|.+.|++|+|+||| +|++|+.|++|+|||++. +..+.. ..+..+. +|...|++|+|+
T Consensus 569 ~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~--------~~~~~~---~~~~~~~~gh~~~V~sv~Fs~~~~~ 636 (902)
T 2oaj_A 569 TAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG--------PAIIYM---ENIREISGAQSACVTCIEFVIMEYG 636 (902)
T ss_dssp EEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT--------TEEEEE---EEGGGTCSSCCCCEEEEEEEEEECT
T ss_pred EEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC--------CeEEEE---eehhHhccccccceEEEEEEEEecC
Confidence 7788999999999999999 999999999999999843 211100 0011233 899999999999
Q ss_pred cCC---CEEEEEeCCCeEEEEEc---CCCeee
Q 008363 345 RLT---GMVAYCSADGTVHRFQL---TAKAVE 370 (568)
Q Consensus 345 p~~---~~l~s~s~Dg~v~iwd~---~~~~~~ 370 (568)
||| .+|++++.|++|++||+ .++...
T Consensus 637 ~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~ 668 (902)
T 2oaj_A 637 DDGYSSILMVCGTDMGEVITYKILPASGGKFD 668 (902)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred CCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence 885 89999999999999999 555543
No 118
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.90 E-value=4.6e-22 Score=204.90 Aligned_cols=226 Identities=18% Similarity=0.244 Sum_probs=153.7
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCC----------------ccCCCCc
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSM----------------KEGTDPR 160 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~----------------~~~~~~~ 160 (568)
+|.+ .|.+++|+|++. .+|++++.||.|++||+.+++....+..... +.+..++
T Consensus 97 ~~~~-~v~~~~~~~~~~---------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 97 VHRY-SVETVQWYPHDT---------GMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp CCSS-CEEEEEECTTCT---------TCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred cCCC-cEEEEEEccCCC---------cEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 4777 555999999443 7999999999999999999887766643322 3455677
Q ss_pred eEEEeecce--ecccccCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEe------------
Q 008363 161 FVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCF------------ 225 (568)
Q Consensus 161 ~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~------------ 225 (568)
.+.+|+... +...+.+|...| .+++|+ |++. +|++|+.||.|++||++... .++..+
T Consensus 167 ~v~~~d~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~ll~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQGHRQEI-LAVSWS--PRYDYILATASADSRVKLWDVRRAS-----GCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp SEEEEESSSSCCCEEECCCCSCE-EEEEEC--SSCTTEEEEEETTSCEEEEETTCSS-----CCSEECCTTTTCSCCCTT
T ss_pred eEEEEeCCCcceeeeecCCCCcE-EEEEEC--CCCCcEEEEEcCCCcEEEEECCCCC-----cccccccccccccceeec
Confidence 888998765 455667899999 999999 7777 69999999999999998652 133333
Q ss_pred ---eCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCC----------------------------------
Q 008363 226 ---SADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPF---------------------------------- 267 (568)
Q Consensus 226 ---~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~---------------------------------- 267 (568)
.+|...|.+++|+|++ .+|++++.|+ |++||+++..
T Consensus 239 ~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSDG------LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY 312 (408)
T ss_dssp TSSCSCSSCEEEEEECTTS------SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE
T ss_pred cccccccCceeEEEEcCCC------CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec
Confidence 5789999999999998 8999999998 9999998642
Q ss_pred ------------cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363 268 ------------RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS 335 (568)
Q Consensus 268 ------------~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~ 335 (568)
.++..+.+|...|++++|+|++++|++++.||.|++||++. ++++ .....+.
T Consensus 313 ~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~--------~~~~--------~~~~~~~ 376 (408)
T 4a11_B 313 GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSL--------YEPV--------PDDDETT 376 (408)
T ss_dssp TTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------
T ss_pred CCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCC--------CCcc--------CCCCceE
Confidence 23455678999999999999999999999999999999954 3222 1211111
Q ss_pred CCEEEEEEecC-CCEEEEEeCCCeEEEEEcC
Q 008363 336 FAIWSVQVSRL-TGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 336 ~~V~~l~~sp~-~~~l~s~s~Dg~v~iwd~~ 365 (568)
....+.+. ...+.+++.|+.+++|+..
T Consensus 377 ---~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 377 ---TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp -------------------------------
T ss_pred ---eccccccccceeecccCccCceeecCCc
Confidence 12233333 3455677789999999873
No 119
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.89 E-value=2.2e-21 Score=194.87 Aligned_cols=188 Identities=14% Similarity=0.166 Sum_probs=162.6
Q ss_pred ccCCCCceEEEeecce-------ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee
Q 008363 154 KEGTDPRFVKLEPVFR-------CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS 226 (568)
Q Consensus 154 ~~~~~~~~v~~~~~~~-------~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~ 226 (568)
++++.|+.+++|+... +...+.+|...| .+++|+ |++.+|++|+.||.|++|+.... .......
T Consensus 55 ~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V-~~~~~s--~dg~~l~s~~~d~~i~~~~~~~~------~~~~~~~ 125 (340)
T 4aow_A 55 LSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV-SDVVIS--SDGQFALSGSWDGTLRLWDLTTG------TTTRRFV 125 (340)
T ss_dssp EEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCE-EEEEEC--TTSSEEEEEETTSEEEEEETTTT------EEEEEEE
T ss_pred EEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCE-EEEEEC--CCCCEEEEEcccccceEEeeccc------ceeeeec
Confidence 4678899999998754 345668999999 999999 88999999999999999999866 6777778
Q ss_pred CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCC--CEEEEEeCCCcEEE
Q 008363 227 ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDP--GCVILSFDDGAMRI 303 (568)
Q Consensus 227 ~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~--~~l~s~~~dg~I~l 303 (568)
.+...+..+.+++.+ .+|++++.|+ +++||+.........+.+|...+..++|++++ .++++++.|+.|++
T Consensus 126 ~~~~~~~~~~~~~~~------~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i 199 (340)
T 4aow_A 126 GHTKDVLSVAFSSDN------RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKV 199 (340)
T ss_dssp CCSSCEEEEEECTTS------SCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEE
T ss_pred CCCCceeEEEEeecC------ccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEE
Confidence 889999999999998 8999999999 99999987655556677899999999999865 56788999999999
Q ss_pred EEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 304 VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 304 wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
||++. + ..+..+.+|...|++++|+|++.+|++++.||.|++||+.+......
T Consensus 200 ~d~~~--------~--------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~ 252 (340)
T 4aow_A 200 WNLAN--------C--------KLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT 252 (340)
T ss_dssp EETTT--------T--------EEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE
T ss_pred EECCC--------C--------ceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee
Confidence 99954 3 33468889999999999999999999999999999999987765543
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.89 E-value=2.5e-21 Score=197.06 Aligned_cols=238 Identities=11% Similarity=0.103 Sum_probs=163.2
Q ss_pred eEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCC----------ccCCCCceEEEeecceecc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSM----------KEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~----------~~~~~~~~v~~~~~~~~~~ 172 (568)
..++|.+++ +.+ ++++.|++|+|||+.+++++..+..+.. .....+..+++|+......
T Consensus 62 ~~~~~~~~~----------~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~ 131 (355)
T 3vu4_A 62 SKVRMLHRT----------NYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWK 131 (355)
T ss_dssp CEEEECTTS----------SEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCC
T ss_pred EEEEEcCCC----------CEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCce
Confidence 378888887 455 6778889999999999988877754332 1112345677777654211
Q ss_pred cccCCcCccceEEEEccCCCCCEEEE--EeCCCeEEEEEccCCCCC---------CCCce-eEEeeCCCCCeeEEEEccC
Q 008363 173 LKCGGTQSIPLTMEWSTSPPHDYLLA--GCHDGTVALWKFVASDSS---------IDSRP-LLCFSADTLPIRAVSWAPA 240 (568)
Q Consensus 173 ~~~~h~~~V~~~v~~s~~~~g~~l~s--gs~Dg~I~iwd~~~~~~~---------~~~~~-~~~~~~h~~~V~~v~~~p~ 240 (568)
......... ..++++ + .++++ |+.||.|++||+.+.... ....+ +..+.+|...|.+++|+|+
T Consensus 132 ~~~~~~~~~-~~~~~s--~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~ 206 (355)
T 3vu4_A 132 RITDDIRFG-GVCEFS--N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK 206 (355)
T ss_dssp BSSCCEEEE-EEEEEE--T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT
T ss_pred eeEEeccCC-ceEEEE--c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC
Confidence 111111122 345555 3 46665 689999999999865200 00112 7788999999999999999
Q ss_pred CCCCCCCcEEEEEcCCC--EEEEECCCCCcceeeeC-C-CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCC
Q 008363 241 ESDSDSANVILTAGHGG--LKFWDIRDPFRPLWDIH-P-APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~--v~lwD~~~~~~~~~~~~-~-h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~ 316 (568)
+ .+||+|+.|+ |++||++++ .++..+. + |...|++++|+|++++|++++.|++|++||++......
T Consensus 207 g------~~l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~--- 276 (355)
T 3vu4_A 207 S------DMVATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNK--- 276 (355)
T ss_dssp S------SEEEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCC---
T ss_pred C------CEEEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcc---
Confidence 9 8999999986 999999987 7777776 5 99999999999999999999999999999996532110
Q ss_pred CCCccC-------ccccceEEEe---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 317 GKPFAG-------TKQQGLHLVN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 317 g~~~~~-------~~~~~l~~~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
...+.. .....+..+. .+......++|++++.+|++++.||.+++|++..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 277 RHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 000000 0000001111 1222346789999999999999999999999853
No 121
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.89 E-value=6.1e-21 Score=188.07 Aligned_cols=240 Identities=11% Similarity=0.062 Sum_probs=168.1
Q ss_pred EEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecce-----ecccccCCcCccceEEEEccCCC---
Q 008363 124 YLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFR-----CSMLKCGGTQSIPLTMEWSTSPP--- 192 (568)
Q Consensus 124 ~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~h~~~V~~~v~~s~~~~--- 192 (568)
.+++++. ..|++|+..++ ++++++..+.. .++.+.+... |..+-.-+...| .+|+++ |+
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~~~~~~~~~~~v-~sla~s--pd~~~ 125 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEV------PVLQIVPVPDVYNLVCVALGNLEIREI-RALFCS--SDDES 125 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSS------CEEEECCCTTCCSCEEEEECSSSEEEE-EEECC--------
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCc------eeEEEEEcCcccceeeeeeccccccce-EEEEEC--CCccc
Confidence 5666665 78999999998 77888766542 2333333221 222223345566 677766 66
Q ss_pred -CCEEEEEe--------------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc---CCCCCCCCc
Q 008363 193 -HDYLLAGC--------------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP---AESDSDSAN 248 (568)
Q Consensus 193 -g~~l~sgs--------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p---~~~~~~~~~ 248 (568)
+.++++++ .|++|++|++... ++.+..+.+|...++.++|++ ++ .
T Consensus 126 ~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d-----G~~~~s~~~~~~~v~~l~fs~~~g~~------~ 194 (356)
T 2w18_A 126 EKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED-----GGGKENQFLMPPEETILTFAEVQGMQ------E 194 (356)
T ss_dssp CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT-----SCEEEEEEECCCSSCEEEEEEEETST------T
T ss_pred cccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC-----CceeeeeccCCCceeeEEeeccCCCC------c
Confidence 55666544 3888999998542 367777788999999999999 55 8
Q ss_pred EEEEEcCCC-EEEEECCCCCcceeeeCCCC---CCeEEEEEcCCCCEE------------EEEeCCCcEEEEEccccccC
Q 008363 249 VILTAGHGG-LKFWDIRDPFRPLWDIHPAP---KFIYGLDWLPDPGCV------------ILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 249 ~las~s~d~-v~lwD~~~~~~~~~~~~~h~---~~i~~l~~sp~~~~l------------~s~~~dg~I~lwd~~~~~~~ 312 (568)
+||+++.|+ |+|||+.++ +++.++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..
T Consensus 195 ~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~----- 268 (356)
T 2w18_A 195 ALLGTTIMNNIVIWNLKTG-QLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK----- 268 (356)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT-----
T ss_pred eEEEecCCCcEEEEECCCC-cEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC-----
Confidence 999999999 999999988 7888887654 357788999999887 457789999999994
Q ss_pred CCCCCCCccCccccceEEE-----ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc
Q 008363 313 VPATGKPFAGTKQQGLHLV-----NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT 387 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~-----~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~ 387 (568)
+|+.+ ..+ .+|...+.+..++ +.++++++.|++|+|||+.+++.......+......+.+++
T Consensus 269 ---tgk~l--------~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS 335 (356)
T 2w18_A 269 ---TTLSV--------GVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS 335 (356)
T ss_dssp ---TTEEE--------EEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEEC
T ss_pred ---CCEEE--------EEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC
Confidence 35432 232 3676665555554 88999999999999999999987776544443344446799
Q ss_pred CCCCceEEcccCCCCC
Q 008363 388 EDESAITVNTPLDNTP 403 (568)
Q Consensus 388 ~~~~~i~~~~~~~~~~ 403 (568)
+++..|+.++....+.
T Consensus 336 PDG~~LaSGS~D~TIk 351 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIF 351 (356)
T ss_dssp SSSSEEEEECTTSCEE
T ss_pred CCCCEEEEEECCCcEE
Confidence 9999999887766553
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.87 E-value=8.8e-20 Score=187.43 Aligned_cols=224 Identities=10% Similarity=0.058 Sum_probs=170.5
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..|.. + .+++|+|++ .+| ++++.|+.|++||+.+++.+..+
T Consensus 29 ~~~~~-~-~~~~~s~dg----------~~l~~~~~~d~~i~v~d~~~~~~~~~~-------------------------- 70 (391)
T 1l0q_A 29 PVGSN-P-MGAVISPDG----------TKVYVANAHSNDVSIIDTATNNVIATV-------------------------- 70 (391)
T ss_dssp ECSSS-E-EEEEECTTS----------SEEEEEEGGGTEEEEEETTTTEEEEEE--------------------------
T ss_pred ecCCC-c-ceEEECCCC----------CEEEEECCCCCeEEEEECCCCeEEEEE--------------------------
Confidence 34443 4 599999999 555 67779999999999998877665
Q ss_pred cCCcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as 252 (568)
..+. .+ .+++|+ |++++|+ +++.|+.|++||+.++ +.+..+..| ..+.+++|+|++ +.| ++
T Consensus 71 ~~~~-~v-~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~------~~~~~~~~~-~~~~~~~~s~dg------~~l~~~ 133 (391)
T 1l0q_A 71 PAGS-SP-QGVAVS--PDGKQVYVTNMASSTLSVIDTTSN------TVAGTVKTG-KSPLGLALSPDG------KKLYVT 133 (391)
T ss_dssp ECSS-SE-EEEEEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEECS-SSEEEEEECTTS------SEEEEE
T ss_pred ECCC-Cc-cceEEC--CCCCEEEEEECCCCEEEEEECCCC------eEEEEEeCC-CCcceEEECCCC------CEEEEE
Confidence 2222 56 899999 8888775 4556799999999876 667766554 568999999998 655 78
Q ss_pred EcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 253 AGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
++.++ |++||+.++ ..+..+..+ ..+.+++|+|++++|+ +++.++.|++||++. ++. +..
T Consensus 134 ~~~~~~v~~~d~~~~-~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--------~~~--------~~~ 195 (391)
T 1l0q_A 134 NNGDKTVSVINTVTK-AVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--------NSV--------IDT 195 (391)
T ss_dssp ETTTTEEEEEETTTT-EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT--------TEE--------EEE
T ss_pred eCCCCEEEEEECCCC-cEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCC--------CeE--------EEE
Confidence 88888 999999977 666666554 4579999999999885 566789999999954 322 234
Q ss_pred EecCCCCEEEEEEecCCCEEEEEe---CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEE
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCS---ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITV 395 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s---~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~ 395 (568)
+. +...+.+++|+|++.+|++++ .|+.|++||+.++........... ..+..+++++..+.+
T Consensus 196 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 196 VK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD--PAGIAVTPDGKKVYV 260 (391)
T ss_dssp EE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEEEE
T ss_pred Ee-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC--ccEEEEccCCCEEEE
Confidence 43 566889999999999998888 699999999998766554333322 345577888877744
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.87 E-value=1.5e-20 Score=196.00 Aligned_cols=228 Identities=10% Similarity=0.026 Sum_probs=176.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
+. +++|+|++ .++++++.++.|++||+.+++....+.. ....+|...|
T Consensus 125 ~~-~~~~s~~~----------~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------------------~~~~~~~~~v 172 (433)
T 3bws_A 125 PK-SVRFIDNT----------RLAIPLLEDEGMDVLDINSGQTVRLSPP---------------------EKYKKKLGFV 172 (433)
T ss_dssp BC-CCEESSSS----------EEEEEBTTSSSEEEEETTTCCEEEECCC---------------------HHHHTTCCEE
T ss_pred ce-EEEEeCCC----------eEEEEeCCCCeEEEEECCCCeEeeecCc---------------------ccccccCCce
Confidence 44 89999965 6888888899999999999877643211 0115788888
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcCCC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGHGG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~d~-v~ 259 (568)
.+++|+ +++.++++++.|+.|++||+.+. ..+..+..|...+.+++|+|++ .++ ++++.++ |+
T Consensus 173 -~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~i~ 237 (433)
T 3bws_A 173 -ETISIP--EHNELWVSQMQANAVHVFDLKTL------AYKATVDLTGKWSKILLYDPIR------DLVYCSNWISEDIS 237 (433)
T ss_dssp -EEEEEG--GGTEEEEEEGGGTEEEEEETTTC------CEEEEEECSSSSEEEEEEETTT------TEEEEEETTTTEEE
T ss_pred -eEEEEc--CCCEEEEEECCCCEEEEEECCCc------eEEEEEcCCCCCeeEEEEcCCC------CEEEEEecCCCcEE
Confidence 999998 78899999999999999999866 7778888899999999999998 555 6666788 99
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe--------CCCcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF--------DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~--------~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+||++++ ..+..+.. ...+.+++|+|++++|++++ .|+.|++||++. ++.+ ..
T Consensus 238 ~~d~~~~-~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~--------~~~~---------~~ 298 (433)
T 3bws_A 238 VIDRKTK-LEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK--------EKLI---------DT 298 (433)
T ss_dssp EEETTTT-EEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT--------TEEE---------EE
T ss_pred EEECCCC-cEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC--------CcEE---------ee
Confidence 9999977 66666654 44589999999999999987 588999999953 4332 22
Q ss_pred ecCCCCEEEEEEecCCC-EEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 332 NCSSFAIWSVQVSRLTG-MVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
..|...+.+++|+|+++ ++++++.|+.|++||+.+++........ ....+.++++++..+.+..
T Consensus 299 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~ 363 (433)
T 3bws_A 299 IGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSC 363 (433)
T ss_dssp EEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEE
T ss_pred ccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEe
Confidence 34566889999999996 4566789999999999987665443222 2233456777777666654
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.86 E-value=8.9e-20 Score=190.09 Aligned_cols=227 Identities=10% Similarity=0.024 Sum_probs=176.0
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
+|.+ .+++++|+|++ .++++++.|+.|++||+.+++.+..+ ..
T Consensus 167 ~~~~-~v~~~~~~~~~----------~~~~s~~~d~~v~~~d~~~~~~~~~~--------------------------~~ 209 (433)
T 3bws_A 167 KKLG-FVETISIPEHN----------ELWVSQMQANAVHVFDLKTLAYKATV--------------------------DL 209 (433)
T ss_dssp TTCC-EEEEEEEGGGT----------EEEEEEGGGTEEEEEETTTCCEEEEE--------------------------EC
T ss_pred ccCC-ceeEEEEcCCC----------EEEEEECCCCEEEEEECCCceEEEEE--------------------------cC
Confidence 6666 66699999998 79999999999999999998877665 45
Q ss_pred CcCccceEEEEccCCCCCEEE-EEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-
Q 008363 177 GTQSIPLTMEWSTSPPHDYLL-AGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG- 254 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s- 254 (568)
|...+ .+++|+ |++.+++ +++.|+.|++||+.++ ..+..+..+ ..+.+++|+|++ .+|++++
T Consensus 210 ~~~~~-~~~~~~--~~~~~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~-~~~~~~~~~~~g------~~l~~~~~ 273 (433)
T 3bws_A 210 TGKWS-KILLYD--PIRDLVYCSNWISEDISVIDRKTK------LEIRKTDKI-GLPRGLLLSKDG------KELYIAQF 273 (433)
T ss_dssp SSSSE-EEEEEE--TTTTEEEEEETTTTEEEEEETTTT------EEEEECCCC-SEEEEEEECTTS------SEEEEEEE
T ss_pred CCCCe-eEEEEc--CCCCEEEEEecCCCcEEEEECCCC------cEEEEecCC-CCceEEEEcCCC------CEEEEEEC
Confidence 66677 999999 7888775 5558999999999866 667777554 459999999998 7888877
Q ss_pred -------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 255 -------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 255 -------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.|+ |++||++++ ..+..+ .|...+.+++|+|+++.|++ ++.|+.|++||+.. ++.
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~--------~~~------ 337 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKE-KLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKE--------KKV------ 337 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTT-EEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTT--------TEE------
T ss_pred CCCccccCCCeEEEEECCCC-cEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCC--------CcE------
Confidence 477 999999976 544444 45567899999999986655 57799999999953 333
Q ss_pred cceEEEecCCCCEEEEEEecCCCEEEEEeC---------------CCeEEEEEcCCCeeeccCCCCCcceeeeecccCCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSRLTGMVAYCSA---------------DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDE 390 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~---------------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~ 390 (568)
+..+. +...+.+++|+|++++|++++. ||.|++||+.+++......... ...+.++++++
T Consensus 338 --~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~--~~~~~~~s~dg 412 (433)
T 3bws_A 338 --QKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN--QPTGLDVSPDN 412 (433)
T ss_dssp --EEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS--SEEEEEECTTS
T ss_pred --EEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC--CCceEEEcCCC
Confidence 23444 6778999999999998888886 5799999998887665433322 23445678888
Q ss_pred CceEEcc
Q 008363 391 SAITVNT 397 (568)
Q Consensus 391 ~~i~~~~ 397 (568)
..+.+..
T Consensus 413 ~~l~~~~ 419 (433)
T 3bws_A 413 RYLVISD 419 (433)
T ss_dssp CEEEEEE
T ss_pred CEEEEEE
Confidence 7776543
No 125
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-19 Score=179.06 Aligned_cols=205 Identities=11% Similarity=0.170 Sum_probs=164.7
Q ss_pred cCCCCceEEEeecce--ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe
Q 008363 155 EGTDPRFVKLEPVFR--CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI 232 (568)
Q Consensus 155 ~~~~~~~v~~~~~~~--~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V 232 (568)
.++.++.+++|+... .......|...| .+++|+ |++.+|++|+.||.|++|++..... ..++..+.+|...|
T Consensus 34 s~~~dg~v~vw~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~~~dg~i~~~~~~~~~~---~~~~~~~~~~~~~i 107 (313)
T 3odt_A 34 SVSRDGTVRLWSKDDQWLGTVVYTGQGFL-NSVCYD--SEKELLLFGGKDTMINGVPLFATSG---EDPLYTLIGHQGNV 107 (313)
T ss_dssp EEETTSEEEEEEESSSEEEEEEEECSSCE-EEEEEE--TTTTEEEEEETTSCEEEEETTCCTT---SCC-CEECCCSSCE
T ss_pred EEEcCCcEEEEECCCCEEEEEeecCCccE-EEEEEC--CCCCEEEEecCCCeEEEEEeeecCC---CCcccchhhcccCE
Confidence 467888999999765 445567889999 999999 8899999999999999999875422 35567788999999
Q ss_pred eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccc
Q 008363 233 RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAA 310 (568)
Q Consensus 233 ~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~ 310 (568)
.+++| ++ .+|++++.|+ |++|| .. ..+..+..|...+.+++|+| ++.+|++++.||.|++||..
T Consensus 108 ~~~~~--~~------~~l~~~~~d~~i~~~d--~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--- 173 (313)
T 3odt_A 108 CSLSF--QD------GVVISGSWDKTAKVWK--EG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--- 173 (313)
T ss_dssp EEEEE--ET------TEEEEEETTSEEEEEE--TT-EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---
T ss_pred EEEEe--cC------CEEEEEeCCCCEEEEc--CC-cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---
Confidence 99999 34 6999999999 99999 23 67778889999999999998 99999999999999999963
Q ss_pred cCCCCCCCCccCccccceEEEec-CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCC
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNC-SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTED 389 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~ 389 (568)
..+..+.. |...|.+++|+|++. |++++.||.|++||+.++........+. ....+..++++
T Consensus 174 ---------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~i~~~~~~~~ 236 (313)
T 3odt_A 174 ---------------KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE-SFVYCIKLLPN 236 (313)
T ss_dssp ---------------EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS-SCEEEEEECTT
T ss_pred ---------------ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC-ceEEEEEEecC
Confidence 23356666 899999999999988 9999999999999998876655433222 23445566666
Q ss_pred CCceEEcc
Q 008363 390 ESAITVNT 397 (568)
Q Consensus 390 ~~~i~~~~ 397 (568)
+ .+..+.
T Consensus 237 ~-~l~~~~ 243 (313)
T 3odt_A 237 G-DIVSCG 243 (313)
T ss_dssp S-CEEEEE
T ss_pred C-CEEEEe
Confidence 6 344443
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=6e-19 Score=183.37 Aligned_cols=249 Identities=10% Similarity=0.120 Sum_probs=186.1
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEe----CCC----cEEEEEC--CCCcee--eEEeccCC-----------------
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLL----GNG----SLEVWEV--PLLRTM--KAIYLSSM----------------- 153 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s----~dg----~V~iwd~--~~~~~~--~~l~~~~~----------------- 153 (568)
+....|.+.+. .++++|+ .|| .|+|||+ .+++++ ..+.++..
T Consensus 65 ~~~~~w~~~g~---------~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 135 (415)
T 2hqs_A 65 VQPAAWSALGI---------DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKL 135 (415)
T ss_dssp CCHHHHHTTTC---------CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhcCC---------CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHH
Confidence 44788999886 6887886 568 8999999 888876 33544432
Q ss_pred -----------cc---CCCC---ceEEEeecce-ecccccCCcCccceEEEEccCCCCCEEEEEeCCC---eEEEEEccC
Q 008363 154 -----------KE---GTDP---RFVKLEPVFR-CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG---TVALWKFVA 212 (568)
Q Consensus 154 -----------~~---~~~~---~~v~~~~~~~-~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~ 212 (568)
+. ...+ ..+.+|+... ....+.+|...+ .+++|+ |+|++|++++.|+ .|++||+.+
T Consensus 136 ~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v-~~~~~S--pdg~~la~~s~~~~~~~i~~~d~~t 212 (415)
T 2hqs_A 136 TGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPL-MSPAWS--PDGSKLAYVTFESGRSALVIQTLAN 212 (415)
T ss_dssp HSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTT
T ss_pred cCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcc-eeeEEc--CCCCEEEEEEecCCCcEEEEEECCC
Confidence 00 0112 6788888754 344556788888 999999 8999999999886 999999987
Q ss_pred CCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEE-EEcCC--C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCC
Q 008363 213 SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVIL-TAGHG--G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPD 288 (568)
Q Consensus 213 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~la-s~s~d--~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~ 288 (568)
+ +.. .+..|...+.+++|+|++ +.|+ +++.+ . |++||+.++ . ...+..|...+.+++|+||
T Consensus 213 g------~~~-~l~~~~~~~~~~~~spdg------~~la~~~~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 213 G------AVR-QVASFPRHNGAPAFSPDG------SKLAFALSKTGSLNLYVMDLASG-Q-IRQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp C------CEE-EEECCSSCEEEEEECTTS------SEEEEEECTTSSCEEEEEETTTC-C-EEECCCCSSCEEEEEECTT
T ss_pred C------cEE-EeecCCCcccCEEEcCCC------CEEEEEEecCCCceEEEEECCCC-C-EEeCcCCCCcccceEECCC
Confidence 6 443 466788899999999999 6666 66654 3 999999876 3 3567788888999999999
Q ss_pred CCEEEEEeC-CC--cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---CeEEEE
Q 008363 289 PGCVILSFD-DG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD---GTVHRF 362 (568)
Q Consensus 289 ~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D---g~v~iw 362 (568)
|++|++++. ++ .|++||+.. ++. ..+..|...+.+++|+|+|++|++++.+ ..|++|
T Consensus 278 g~~l~~~s~~~g~~~i~~~d~~~--------~~~---------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~ 340 (415)
T 2hqs_A 278 SQNLAFTSDQAGRPQVYKVNING--------GAP---------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 340 (415)
T ss_dssp SSEEEEEECTTSSCEEEEEETTS--------SCC---------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEECCCCCcEEEEEECCC--------CCE---------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEE
Confidence 999998886 45 577778742 332 3455577788999999999999988865 689999
Q ss_pred EcCCCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 363 QLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 363 d~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
|+.++...... ... ...+.++++++..|...+.
T Consensus 341 d~~~~~~~~l~-~~~--~~~~~~~spdg~~l~~~s~ 373 (415)
T 2hqs_A 341 DLATGGVQVLS-STF--LDETPSLAPNGTMVIYSSS 373 (415)
T ss_dssp ETTTCCEEECC-CSS--SCEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEec-CCC--CcCCeEEcCCCCEEEEEEc
Confidence 99987764432 222 4455578899988877553
No 127
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.85 E-value=4.5e-19 Score=182.10 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=160.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEE-EEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYL-AVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~l-as~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
.+.+.. .+.+++|+|++ .+| ++++.++.|++||+.+++.+..+
T Consensus 69 ~~~~~~-~v~~~~~spdg----------~~l~~~~~~~~~v~v~d~~~~~~~~~~------------------------- 112 (391)
T 1l0q_A 69 TVPAGS-SPQGVAVSPDG----------KQVYVTNMASSTLSVIDTTSNTVAGTV------------------------- 112 (391)
T ss_dssp EEECSS-SEEEEEECTTS----------SEEEEEETTTTEEEEEETTTTEEEEEE-------------------------
T ss_pred EEECCC-CccceEECCCC----------CEEEEEECCCCEEEEEECCCCeEEEEE-------------------------
Confidence 334444 45599999999 566 45556799999999998777654
Q ss_pred ccCCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-E
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-L 251 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-a 251 (568)
..| ..+ .+++|+ ++++.| ++++.|+.|++||+.++ +.+..+..| ..+.+++|+|++ .+| +
T Consensus 113 -~~~-~~~-~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~------~~~~~~~~~-~~~~~~~~~~dg------~~l~~ 174 (391)
T 1l0q_A 113 -KTG-KSP-LGLALS--PDGKKLYVTNNGDKTVSVINTVTK------AVINTVSVG-RSPKGIAVTPDG------TKVYV 174 (391)
T ss_dssp -ECS-SSE-EEEEEC--TTSSEEEEEETTTTEEEEEETTTT------EEEEEEECC-SSEEEEEECTTS------SEEEE
T ss_pred -eCC-CCc-ceEEEC--CCCCEEEEEeCCCCEEEEEECCCC------cEEEEEecC-CCcceEEECCCC------CEEEE
Confidence 222 344 899999 888877 78888999999999876 777777665 457999999998 555 6
Q ss_pred EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe---CCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 252 TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
+++.++ |++||+++. ..+..+. +...+.+++|+|++++|++++ .++.|++||++. ++.
T Consensus 175 ~~~~~~~v~~~d~~~~-~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~--------~~~-------- 236 (391)
T 1l0q_A 175 ANFDSMSISVIDTVTN-SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT--------NKI-------- 236 (391)
T ss_dssp EETTTTEEEEEETTTT-EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT--------TEE--------
T ss_pred EeCCCCEEEEEECCCC-eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC--------CeE--------
Confidence 778888 999999987 5555553 456789999999999999987 689999999953 432
Q ss_pred eEEEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCCeeecc
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++.....
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 35666654 57899999999877 6778899999999998776554
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=8e-19 Score=171.77 Aligned_cols=239 Identities=14% Similarity=0.113 Sum_probs=170.0
Q ss_pred EEEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeeccee
Q 008363 92 VVLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 92 ~~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
......|.+ .+.+++|+|++ .+|++++ ++.|++||+.+ ++....+
T Consensus 34 ~~~~~~~~~-~v~~~~~spdg----------~~l~~~~-~~~i~~~d~~~~~~~~~~~---------------------- 79 (297)
T 2ojh_A 34 MRVVWQTPE-LFEAPNWSPDG----------KYLLLNS-EGLLYRLSLAGDPSPEKVD---------------------- 79 (297)
T ss_dssp EEEEEEESS-CCEEEEECTTS----------SEEEEEE-TTEEEEEESSSCCSCEECC----------------------
T ss_pred eeeeccCCc-ceEeeEECCCC----------CEEEEEc-CCeEEEEeCCCCCCceEec----------------------
Confidence 334566777 55599999999 7888876 78999999998 7655432
Q ss_pred cccccCC-cCccceEEEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 171 SMLKCGG-TQSIPLTMEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 171 ~~~~~~h-~~~V~~~v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+| ...+ .+++|+ |++.+|++++ .++.+.||.+.... .....+..+. .+..++|+|++
T Consensus 80 ----~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~-~~~~~~~spdg------ 140 (297)
T 2ojh_A 80 ----TGFATICN-NDHGIS--PDGALYAISDKVEFGKSAIYLLPSTG-----GTPRLMTKNL-PSYWHGWSPDG------ 140 (297)
T ss_dssp ----CTTCCCBC-SCCEEC--TTSSEEEEEECTTTSSCEEEEEETTC-----CCCEECCSSS-SEEEEEECTTS------
T ss_pred ----cccccccc-cceEEC--CCCCEEEEEEeCCCCcceEEEEECCC-----CceEEeecCC-CccceEECCCC------
Confidence 233 3556 889999 8999999999 44566666664321 2234443333 48999999998
Q ss_pred cEEE-EEcCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 248 NVIL-TAGHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 248 ~~la-s~s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
++|+ +++.++ ++||++.........+..+...+.+++|+|++++|++++ .++.++||+++. .+
T Consensus 141 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~-------~~------- 206 (297)
T 2ojh_A 141 KSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRV-------DG------- 206 (297)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET-------TS-------
T ss_pred CEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECC-------CC-------
Confidence 6665 777777 999987543345566677888899999999999888876 489999999853 12
Q ss_pred ccceEEEecCCCCEEEEEEecCCCEEEEEeCC-----------CeEEEEEcCCCeeeccCCC-CCcceeeeecccCCCCc
Q 008363 325 QQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-----------GTVHRFQLTAKAVEKDHSR-NRPMHFLCGSVTEDESA 392 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-----------g~v~iwd~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~ 392 (568)
..+..+..|...+.+++|+|++++|++++.+ +.|++||+.++........ .......+.++++++..
T Consensus 207 -~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 285 (297)
T 2ojh_A 207 -SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDE 285 (297)
T ss_dssp -SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSE
T ss_pred -CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCE
Confidence 2235667788889999999999999988876 5699999987654322110 01112334567888887
Q ss_pred eEEccc
Q 008363 393 ITVNTP 398 (568)
Q Consensus 393 i~~~~~ 398 (568)
|.+.+.
T Consensus 286 l~~~~~ 291 (297)
T 2ojh_A 286 FAYVRY 291 (297)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 766543
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=9.8e-20 Score=190.27 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=153.1
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
..+++++++ ++|++++.|| |+||+......... .......+..... .....|...| .
T Consensus 40 n~lavs~~~----------~~l~~~~~dg-v~v~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~~v-~ 96 (434)
T 2oit_A 40 SLLAVSNKY----------GLVFAGGASG-LQIFPTKNLLIQNK-------PGDDPNKIVDKVQ----GLLVPMKFPI-H 96 (434)
T ss_dssp BCEEEETTT----------TEEEEEETTE-EEEEEHHHHCCCCC-------TTCCTTCEEECCC----CEEECCSSCE-E
T ss_pred cEEEEecCC----------CEEEEECCCE-EEEEEchHhhhhcc-------cccCcccccccCc----cccccCCCcc-c
Confidence 479999998 7999999988 99988643110000 0000000110000 0013456678 9
Q ss_pred EEEEccCCCCCEEE----EEeCCCeEEEEEccCCC-----CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 184 TMEWSTSPPHDYLL----AGCHDGTVALWKFVASD-----SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 184 ~v~~s~~~~g~~l~----sgs~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
+++|+ ++|.+|+ +|+.|++|+|||+.+.. .......+..+.+|...|.+|+|+|+. +.+|++++
T Consensus 97 ~l~~s--pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~~~las~s 169 (434)
T 2oit_A 97 HLALS--CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV-----PSMVAVCL 169 (434)
T ss_dssp EEEEC--TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC-----TTEEEEEE
T ss_pred EEEEc--CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC-----CCEEEEEE
Confidence 99999 8899999 78899999999987431 000112345667899999999999983 28999999
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
.|+ |++||+++. ..+....+|...|++++|+|+|.+|++|+.||+|++||++. +. ...+..
T Consensus 170 ~Dg~v~iwD~~~~-~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~---------~~--------~~~~~~ 231 (434)
T 2oit_A 170 ADGSIAVLQVTET-VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---------QE--------KKVIPC 231 (434)
T ss_dssp TTSCEEEEEESSS-EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC---------CE--------EEEECC
T ss_pred CCCeEEEEEcCCC-cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC---------cc--------cccccC
Confidence 999 999999987 55555667888999999999999999999999999999951 11 123322
Q ss_pred -------CCCCEEEEEEecCCCEEEE-EeCCC------eEEEEEcCCC
Q 008363 334 -------SSFAIWSVQVSRLTGMVAY-CSADG------TVHRFQLTAK 367 (568)
Q Consensus 334 -------h~~~V~~l~~sp~~~~l~s-~s~Dg------~v~iwd~~~~ 367 (568)
|...|.+++|++++.++++ .+.|| .+++|++...
T Consensus 232 ~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 232 PPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 3348999999998877654 34453 3899999643
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.83 E-value=1.3e-18 Score=180.76 Aligned_cols=204 Identities=12% Similarity=0.082 Sum_probs=158.4
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCC---cEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG---SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg---~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
..+.+|.+ .+.+++|+|++ +.||+++.++ .|++||+.+++... +
T Consensus 172 ~~l~~~~~-~v~~~~~Spdg----------~~la~~s~~~~~~~i~~~d~~tg~~~~-l--------------------- 218 (415)
T 2hqs_A 172 FVVHRSPQ-PLMSPAWSPDG----------SKLAYVTFESGRSALVIQTLANGAVRQ-V--------------------- 218 (415)
T ss_dssp EEEEEESS-CEEEEEECTTS----------SEEEEEECTTSSCEEEEEETTTCCEEE-E---------------------
T ss_pred EEEeCCCC-cceeeEEcCCC----------CEEEEEEecCCCcEEEEEECCCCcEEE-e---------------------
Confidence 34456777 55599999999 7999999885 99999999877653 3
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEE-EEeCCCe--EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLL-AGCHDGT--VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~-sgs~Dg~--I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~ 246 (568)
..|...+ .+++|+ |+|++|+ +++.||. |.+||+.++ .. ..+..|...+.+++|+|++
T Consensus 219 -----~~~~~~~-~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~------~~-~~l~~~~~~~~~~~~spdg----- 278 (415)
T 2hqs_A 219 -----ASFPRHN-GAPAFS--PDGSKLAFALSKTGSLNLYVMDLASG------QI-RQVTDGRSNNTEPTWFPDS----- 278 (415)
T ss_dssp -----ECCSSCE-EEEEEC--TTSSEEEEEECTTSSCEEEEEETTTC------CE-EECCCCSSCEEEEEECTTS-----
T ss_pred -----ecCCCcc-cCEEEc--CCCCEEEEEEecCCCceEEEEECCCC------CE-EeCcCCCCcccceEECCCC-----
Confidence 4566677 999999 8999887 6666665 999998865 33 5677888899999999999
Q ss_pred CcEEEEEcC-CC---EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC---CcEEEEEccccccCCCCCCCC
Q 008363 247 ANVILTAGH-GG---LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD---GAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 247 ~~~las~s~-d~---v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d---g~I~lwd~~~~~~~~~~~g~~ 319 (568)
++|++++. ++ |.+||+.++ . ...+..+...+.+++|+|+|++|++++.+ ..|++||+.. ++.
T Consensus 279 -~~l~~~s~~~g~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~--------~~~ 347 (415)
T 2hqs_A 279 -QNLAFTSDQAGRPQVYKVNINGG-A-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT--------GGV 347 (415)
T ss_dssp -SEEEEEECTTSSCEEEEEETTSS-C-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTT--------CCE
T ss_pred -CEEEEEECCCCCcEEEEEECCCC-C-EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCC--------CCE
Confidence 77777765 43 777788865 2 33455567788999999999999988764 5899999943 332
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeee
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVE 370 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~ 370 (568)
..+..|. .+.+++|+|+|++|++++.|+ .|++||+..+...
T Consensus 348 ---------~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~ 391 (415)
T 2hqs_A 348 ---------QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 391 (415)
T ss_dssp ---------EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred ---------EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEE
Confidence 3445554 889999999999999998887 7999999765443
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.76 E-value=3.2e-17 Score=183.16 Aligned_cols=251 Identities=13% Similarity=0.103 Sum_probs=165.1
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeC-CC-----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
.+.+++|+|+| ++|++++. |+ .|++||+.+++....+..+.... ....+.............
T Consensus 38 ~~~~~~~SpdG----------~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 105 (741)
T 2ecf_A 38 TLMKPKVAPDG----------SRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLP--GTETLSDEEKARRERQRI 105 (741)
T ss_dssp CCEEEEECTTS----------SEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC---------------------
T ss_pred CCCCceEecCC----------CEEEEEeccCCCCcccEEEEEECCCCceeEccchhhccc--ccccccchhhhhhhhhhh
Confidence 45699999999 89999998 88 89999999987766553321100 000000000000000000
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
.....+ .+++|+ |+|++|++++. +.|.+||+.++.. .....+..|...+..++|+|+| ++||.++.
T Consensus 106 ~~~~~v-~~~~~S--pDg~~l~~~~~-~~i~~~d~~~~~~----~~~~~l~~~~~~~~~~~~SPDG------~~la~~~~ 171 (741)
T 2ecf_A 106 AAMTGI-VDYQWS--PDAQRLLFPLG-GELYLYDLKQEGK----AAVRQLTHGEGFATDAKLSPKG------GFVSFIRG 171 (741)
T ss_dssp -CCEES-CCCEEC--TTSSEEEEEET-TEEEEEESSSCST----TSCCBCCCSSSCEEEEEECTTS------SEEEEEET
T ss_pred ccccCc-ceeEEC--CCCCEEEEEeC-CcEEEEECCCCCc----ceEEEcccCCcccccccCCCCC------CEEEEEeC
Confidence 011336 789999 99999999986 9999999986510 0334456778889999999999 89999886
Q ss_pred CCEEEEECCCCCcceeeeCCCCCC----------------eEEEEEcCCCCEEEEEeCCC--------------------
Q 008363 256 GGLKFWDIRDPFRPLWDIHPAPKF----------------IYGLDWLPDPGCVILSFDDG-------------------- 299 (568)
Q Consensus 256 d~v~lwD~~~~~~~~~~~~~h~~~----------------i~~l~~sp~~~~l~s~~~dg-------------------- 299 (568)
+.|++||+.++ ........+... +..++|+|||++|++++.|+
T Consensus 172 ~~i~~~d~~~g-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~ 250 (741)
T 2ecf_A 172 RNLWVIDLASG-RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIE 250 (741)
T ss_dssp TEEEEEETTTT-EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEE
T ss_pred CcEEEEecCCC-CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceE
Confidence 66999999876 444333333332 47799999999999987765
Q ss_pred -------------cEEEEEccccccCCCCC-CCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEEeC-----CCe
Q 008363 300 -------------AMRIVSLLKAAYDVPAT-GKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYCSA-----DGT 358 (568)
Q Consensus 300 -------------~I~lwd~~~~~~~~~~~-g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~s~-----Dg~ 358 (568)
.|++||+. + ++.. ... ..|...+..++| |+|++|++++. +..
T Consensus 251 ~~~~~~g~~~~~~~l~~~d~~--------~~~~~~--------~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~ 313 (741)
T 2ecf_A 251 QRYPAAGDANVQVKLGVISPA--------EQAQTQ--------WIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD 313 (741)
T ss_dssp EECCBTTSCCCEEEEEEECSS--------TTCCCE--------EECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE
T ss_pred eecCCCCCCCCeeEEEEEECC--------CCCceE--------EecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE
Confidence 78888873 3 3321 111 147788999999 99999987764 678
Q ss_pred EEEEEcCCCeeeccCCCCCcc---eeeeecccCCCCceEEc
Q 008363 359 VHRFQLTAKAVEKDHSRNRPM---HFLCGSVTEDESAITVN 396 (568)
Q Consensus 359 v~iwd~~~~~~~~~~~~~~~~---~~~~~s~~~~~~~i~~~ 396 (568)
|++||+.++............ ......+++++..+.+.
T Consensus 314 i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~ 354 (741)
T 2ecf_A 314 LVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSS 354 (741)
T ss_dssp EEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEE
T ss_pred EEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEe
Confidence 999999887654432211111 12244677888754443
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.76 E-value=5.7e-18 Score=188.60 Aligned_cols=227 Identities=13% Similarity=0.147 Sum_probs=159.9
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC---
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ--- 179 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~--- 179 (568)
..+++|+|++ .++++ +.||+|++||+.+++....+ .+|..
T Consensus 19 ~~~~~~spdg----------~~~~~-~~dg~i~~~d~~~g~~~~~~--------------------------~~~~~~~~ 61 (723)
T 1xfd_A 19 DPEAKWISDT----------EFIYR-EQKGTVRLWNVETNTSTVLI--------------------------EGKKIESL 61 (723)
T ss_dssp CCCCCBSSSS----------CBCCC-CSSSCEEEBCGGGCCCEEEE--------------------------CTTTTTTT
T ss_pred ccccEEcCCC----------cEEEE-eCCCCEEEEECCCCcEEEEe--------------------------cccccccc
Confidence 3489999999 66666 78999999999998776554 33332
Q ss_pred ccceEEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.| .+++|+ |||++|++++.+ +.|.+||+.++.. ..+....+|...+..++|+|+| +.|
T Consensus 62 ~v-~~~~~S--pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~SPdG------~~l 128 (723)
T 1xfd_A 62 RA-IRYEIS--PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP----QSLDPPEVSNAKLQYAGWGPKG------QQL 128 (723)
T ss_dssp TC-SEEEEC--TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----EECCCTTCCSCCCSBCCBCSST------TCE
T ss_pred cc-ceEEEC--CCCCEEEEEecCccceeecceeeEEEEECCCCce----EeccCCccccccccccEECCCC------CEE
Confidence 47 899999 899999999875 7888999987622 2233333455568999999999 899
Q ss_pred EEEcCCCEEEEECCCCCcceeeeCCCCCCe------------------EEEEEcCCCCEEEEEeCCC-------------
Q 008363 251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFI------------------YGLDWLPDPGCVILSFDDG------------- 299 (568)
Q Consensus 251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i------------------~~l~~sp~~~~l~s~~~dg------------- 299 (568)
|.++.+.|++||+.++ ........+...+ .+++|+|||++|++++.|+
T Consensus 129 a~~~~~~i~~~~~~~g-~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~ 207 (723)
T 1xfd_A 129 IFIFENNIYYCAHVGK-QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG 207 (723)
T ss_dssp EEEETTEEEEESSSSS-CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS
T ss_pred EEEECCeEEEEECCCC-ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC
Confidence 9988755999999876 4444444333323 7899999999999987543
Q ss_pred ---------------------cEEEEEccccccCCCCCCCCccCccccceEEEec------CCCCEEEEEEecCCCEEEE
Q 008363 300 ---------------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC------SSFAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 300 ---------------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~------h~~~V~~l~~sp~~~~l~s 352 (568)
.|++||+.. ++.. ..+.. +...+..++|+|+|++|++
T Consensus 208 ~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~--------~~~~--------~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~ 271 (723)
T 1xfd_A 208 SIYPTVKPYHYPKAGSENPSISLHVIGLNG--------PTHD--------LEMMPPDDPRMREYYITMVKWATSTKVAVT 271 (723)
T ss_dssp SSSCCCEEEECCBTTSCCCEEEEEEEESSS--------SCCC--------EECCCCCCGGGSSEEEEEEEESSSSEEEEE
T ss_pred cCCCcceeccCCCCCCCCCeeEEEEEECCC--------Ccee--------EEeeCCccCCCccceeEEEEEeCCCeEEEE
Confidence 688888743 3221 23333 3567899999999998877
Q ss_pred EeC----CCeEEEEEcCCCeeeccCCCCCccee----eeecccCCCCceEEc
Q 008363 353 CSA----DGTVHRFQLTAKAVEKDHSRNRPMHF----LCGSVTEDESAITVN 396 (568)
Q Consensus 353 ~s~----Dg~v~iwd~~~~~~~~~~~~~~~~~~----~~~s~~~~~~~i~~~ 396 (568)
.+. +..|++||+.++.............. ....+++++..|.+.
T Consensus 272 ~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 272 WLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp EEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred EEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 653 36799999988765432111100100 134677888876653
No 133
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.76 E-value=2e-17 Score=172.76 Aligned_cols=163 Identities=15% Similarity=0.194 Sum_probs=126.3
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEE----EEeCCCcEEEEECCCC--------ceeeEEeccCCccCCCCceEE
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLA----VLLGNGSLEVWEVPLL--------RTMKAIYLSSMKEGTDPRFVK 163 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~la----s~s~dg~V~iwd~~~~--------~~~~~l~~~~~~~~~~~~~v~ 163 (568)
+.|.+ .+.+++|+|++ .+|| +|+.|+.|+|||+.++ +.+..
T Consensus 89 ~~~~~-~v~~l~~spdg----------~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~---------------- 141 (434)
T 2oit_A 89 VPMKF-PIHHLALSCDN----------LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAY---------------- 141 (434)
T ss_dssp ECCSS-CEEEEEECTTS----------CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEE----------------
T ss_pred ccCCC-cccEEEEcCCC----------CEEEEEEeccCCCceEEEEEccccccCCcCCcceeee----------------
Confidence 34555 56699999999 7888 7888999999998763 11111
Q ss_pred EeecceecccccCCcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCC
Q 008363 164 LEPVFRCSMLKCGGTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAES 242 (568)
Q Consensus 164 ~~~~~~~~~~~~~h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~ 242 (568)
.....+|...| .+++|+ |+ +.+|++|+.||+|++||+++. ..+....+|...|.+++|+|++
T Consensus 142 -------~~~~~~h~~~V-~~v~~~--p~~~~~las~s~Dg~v~iwD~~~~------~~~~~~~~~~~~v~~v~wspdg- 204 (434)
T 2oit_A 142 -------HKLLKDAGGMV-IDMKWN--PTVPSMVAVCLADGSIAVLQVTET------VKVCATLPSTVAVTSVCWSPKG- 204 (434)
T ss_dssp -------EECCCSGGGSE-EEEEEC--SSCTTEEEEEETTSCEEEEEESSS------EEEEEEECGGGCEEEEEECTTS-
T ss_pred -------eeccCCCCCce-EEEEEC--CCCCCEEEEEECCCeEEEEEcCCC------cceeeccCCCCceeEEEEcCCC-
Confidence 11226799999 999999 55 689999999999999999866 5556667899999999999999
Q ss_pred CCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-------CCCCeEEEEEcCCCCEEEEE-eCCCc------EEEEEcc
Q 008363 243 DSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-------APKFIYGLDWLPDPGCVILS-FDDGA------MRIVSLL 307 (568)
Q Consensus 243 ~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-------h~~~i~~l~~sp~~~~l~s~-~~dg~------I~lwd~~ 307 (568)
++|++|+.|+ |++||++ . .....+.. |...|.+++|++++.++++. +.||. +++|+++
T Consensus 205 -----~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 205 -----KQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp -----SCEEEEETTSCEEEECTT-C-CEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred -----CEEEEEcCCCcEEEEccC-C-cccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEec
Confidence 8999999999 9999998 3 33333332 23378999999988877654 34433 8999997
Q ss_pred cc
Q 008363 308 KA 309 (568)
Q Consensus 308 ~~ 309 (568)
+.
T Consensus 278 ~~ 279 (434)
T 2oit_A 278 KK 279 (434)
T ss_dssp CT
T ss_pred cC
Confidence 63
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.75 E-value=7.3e-16 Score=154.47 Aligned_cols=239 Identities=7% Similarity=0.018 Sum_probs=155.1
Q ss_pred EeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCC-CcEEEEECC--CCcee--eEEeccCCccCCCCceEEEeecc
Q 008363 94 LCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-GSLEVWEVP--LLRTM--KAIYLSSMKEGTDPRFVKLEPVF 168 (568)
Q Consensus 94 ~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d-g~V~iwd~~--~~~~~--~~l~~~~~~~~~~~~~v~~~~~~ 168 (568)
....|...+ ..++|+|++ ++|++++.+ +.|.+|++. ++... ..+
T Consensus 32 ~~~~~~~~~-~~~~~spdg----------~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------------- 80 (343)
T 1ri6_A 32 QVVDVPGQV-QPMVVSPDK----------RYLYVGVRPEFRVLAYRIAPDDGALTFAAES-------------------- 80 (343)
T ss_dssp EEEECSSCC-CCEEECTTS----------SEEEEEETTTTEEEEEEECTTTCCEEEEEEE--------------------
T ss_pred eeEecCCCC-ceEEECCCC----------CEEEEeecCCCeEEEEEecCCCCceeecccc--------------------
Confidence 335566644 489999999 778888876 999999998 44322 111
Q ss_pred eecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 169 RCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 169 ~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
..+. .+ ..++|+ |+|++|++++. ++.|.+||+..+. ....+..+.. ...+.+++|+|++
T Consensus 81 ------~~~~-~~-~~~~~s--~dg~~l~~~~~~~~~i~~~d~~~~~---~~~~~~~~~~-~~~~~~~~~s~dg------ 140 (343)
T 1ri6_A 81 ------ALPG-SL-THISTD--HQGQFVFVGSYNAGNVSVTRLEDGL---PVGVVDVVEG-LDGCHSANISPDN------ 140 (343)
T ss_dssp ------ECSS-CC-SEEEEC--TTSSEEEEEETTTTEEEEEEEETTE---EEEEEEEECC-CTTBCCCEECTTS------
T ss_pred ------ccCC-CC-cEEEEc--CCCCEEEEEecCCCeEEEEECCCCc---cccccccccC-CCCceEEEECCCC------
Confidence 1122 44 889999 88987776665 8999999995220 1144445544 3458999999998
Q ss_pred cEEEEEc-CCC-EEEEECCCCCcce--e--eeC-CCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCC
Q 008363 248 NVILTAG-HGG-LKFWDIRDPFRPL--W--DIH-PAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 248 ~~las~s-~d~-v~lwD~~~~~~~~--~--~~~-~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
++|++++ .++ |.+||+.+..... . .+. .....+..++|+|++++|++++ .++.|++||+... +|+.
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~------~g~~ 214 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP------HGNI 214 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT------TSCC
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCC------CCcE
Confidence 6666665 667 9999998732222 1 222 2345688999999999887665 6899999999531 2322
Q ss_pred ccCccccceEEEe----cC--CCCEEEEEEecCCCEEEE-EeCCCeEEEEEcC--CCeee--ccCCCCCcceeeeecccC
Q 008363 320 FAGTKQQGLHLVN----CS--SFAIWSVQVSRLTGMVAY-CSADGTVHRFQLT--AKAVE--KDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 320 ~~~~~~~~l~~~~----~h--~~~V~~l~~sp~~~~l~s-~s~Dg~v~iwd~~--~~~~~--~~~~~~~~~~~~~~s~~~ 388 (568)
..+..+. ++ ...+..++|+|++++|++ +..|+.|.+|++. ++... ........ ....++++
T Consensus 215 ------~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~s~ 286 (343)
T 1ri6_A 215 ------ECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ--PRGFNVDH 286 (343)
T ss_dssp ------EEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS--CCCEEECT
T ss_pred ------EEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc--cceEEECC
Confidence 1112222 11 235678999999987774 4579999999997 32222 11111111 23346777
Q ss_pred CCCceEEcc
Q 008363 389 DESAITVNT 397 (568)
Q Consensus 389 ~~~~i~~~~ 397 (568)
++..+.+..
T Consensus 287 dg~~l~~~~ 295 (343)
T 1ri6_A 287 SGKYLIAAG 295 (343)
T ss_dssp TSSEEEEEC
T ss_pred CCCEEEEec
Confidence 777766654
No 135
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.75 E-value=1.3e-15 Score=153.65 Aligned_cols=233 Identities=9% Similarity=0.004 Sum_probs=164.9
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
...++|+|++. .++++...++.|.+||..+++.+..+..+..... .......+
T Consensus 91 ~~~~~~s~dg~---------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~- 143 (353)
T 3vgz_A 91 PFGATINNTTQ---------TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRT-----------------EEVRPLQP- 143 (353)
T ss_dssp CCSEEEETTTT---------EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCC-----------------SSCCCCEE-
T ss_pred cceEEECCCCC---------EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccc-----------------cccCCCCC-
Confidence 34899999993 2555556689999999999887766532210000 00001113
Q ss_pred eEEEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
.+++|+ |+|+++++++ .++.|.+||+.+. +.+..+..+...+.+++|+|++ .+|++++.++ |.
T Consensus 144 ~~~~~s--~dg~~l~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~i~ 209 (353)
T 3vgz_A 144 RELVAD--DATNTVYISGIGKESVIWVVDGGNI------KLKTAIQNTGKMSTGLALDSEG------KRLYTTNADGELI 209 (353)
T ss_dssp EEEEEE--TTTTEEEEEEESSSCEEEEEETTTT------EEEEEECCCCTTCCCCEEETTT------TEEEEECTTSEEE
T ss_pred ceEEEC--CCCCEEEEEecCCCceEEEEcCCCC------ceEEEecCCCCccceEEECCCC------CEEEEEcCCCeEE
Confidence 788999 8888777766 4889999999866 7777776566678999999999 7888888888 99
Q ss_pred EEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 260 FWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 260 lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
+||+.+. ..+..+. ++...+..++|+|++++|++++. ++.|.+||+.. ++.+ ..+...
T Consensus 210 ~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--------~~~~--------~~~~~~ 272 (353)
T 3vgz_A 210 TIDTADN-KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--------GNIL--------AKVAAP 272 (353)
T ss_dssp EEETTTT-EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--------CCEE--------EEEECS
T ss_pred EEECCCC-eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--------CcEE--------EEEEcC
Confidence 9999987 5554443 24556889999999998888765 59999999943 4432 344433
Q ss_pred CCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 335 SFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
. + ..++|+|++++|++++ .++.|.+||+.+++..........+ .+.++++++..+.+..
T Consensus 273 ~-~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~ 332 (353)
T 3vgz_A 273 E-S-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHP--NSLALSADGKTLYVSV 332 (353)
T ss_dssp S-C-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEE--EEEEECTTSCEEEEEE
T ss_pred C-C-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCC--CeEEEcCCCCEEEEEE
Confidence 2 2 5689999998665555 7999999999988776543333323 3446788888776643
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.74 E-value=1.4e-16 Score=155.63 Aligned_cols=210 Identities=11% Similarity=0.071 Sum_probs=149.2
Q ss_pred EEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEE
Q 008363 127 VLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVA 206 (568)
Q Consensus 127 s~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~ 206 (568)
.++.|+.|++||+.+++.... ..|...+ .+++|+ |+|.+|++++ ++.|.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~---------------------------~~~~~~v-~~~~~s--pdg~~l~~~~-~~~i~ 65 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVV---------------------------WQTPELF-EAPNWS--PDGKYLLLNS-EGLLY 65 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEE---------------------------EEESSCC-EEEEEC--TTSSEEEEEE-TTEEE
T ss_pred CCCcceeEEEEeCCCCceeee---------------------------ccCCcce-EeeEEC--CCCCEEEEEc-CCeEE
Confidence 446789999999998765532 4566777 999999 8999999987 88999
Q ss_pred EEEccC-CCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEE--ECCCCCcceeeeCCCCCC
Q 008363 207 LWKFVA-SDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFW--DIRDPFRPLWDIHPAPKF 279 (568)
Q Consensus 207 iwd~~~-~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lw--D~~~~~~~~~~~~~h~~~ 279 (568)
+||+.+ + .....+..| ...+.+++|+|++ .+|++++. ++ +.|| |+.+. ....+..+ ..
T Consensus 66 ~~d~~~~~------~~~~~~~~~~~~~~~~~~~spdg------~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~-~~ 130 (297)
T 2ojh_A 66 RLSLAGDP------SPEKVDTGFATICNNDHGISPDG------ALYAISDKVEFGKSAIYLLPSTGG--TPRLMTKN-LP 130 (297)
T ss_dssp EEESSSCC------SCEECCCTTCCCBCSCCEECTTS------SEEEEEECTTTSSCEEEEEETTCC--CCEECCSS-SS
T ss_pred EEeCCCCC------CceEeccccccccccceEECCCC------CEEEEEEeCCCCcceEEEEECCCC--ceEEeecC-CC
Confidence 999987 5 444555455 3678999999999 78888873 33 5555 54443 23344333 34
Q ss_pred eEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCC
Q 008363 280 IYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADG 357 (568)
Q Consensus 280 i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg 357 (568)
+..++|+|++++|+ +++.++.++||+++.. ++. ...+..|...+.+++|+|++.+|++++ .|+
T Consensus 131 ~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~------~~~---------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 195 (297)
T 2ojh_A 131 SYWHGWSPDGKSFTYCGIRDQVFDIYSMDID------SGV---------ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTG 195 (297)
T ss_dssp EEEEEECTTSSEEEEEEEETTEEEEEEEETT------TCC---------EEECCCSSSCEEEEEECTTSSEEEEEECTTS
T ss_pred ccceEECCCCCEEEEEECCCCceEEEEEECC------CCc---------ceEcccCCCccccceECCCCCEEEEEecCCC
Confidence 89999999999888 6677999999997431 122 245667888999999999999887766 599
Q ss_pred eEEEEEcC-CCeeeccCCCCCcceeeeecccCCCCceEEccc
Q 008363 358 TVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTEDESAITVNTP 398 (568)
Q Consensus 358 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~ 398 (568)
.+.+|++. .+......... .....+..+++++..|+..+.
T Consensus 196 ~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 236 (297)
T 2ojh_A 196 QMQIWRVRVDGSSVERITDS-AYGDWFPHPSPSGDKVVFVSY 236 (297)
T ss_dssp SCEEEEEETTSSCEEECCCC-SEEEEEEEECTTSSEEEEEEE
T ss_pred CccEEEECCCCCCcEEEecC-CcccCCeEECCCCCEEEEEEc
Confidence 99999885 22222221211 123445578888888776544
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.74 E-value=7.9e-16 Score=165.15 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=164.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEEC--CCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEV--PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~--~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
++.++|+|++ ++|++++.|++|++||+ .+++++..+ . +...
T Consensus 181 ~~~v~~spdg----------~~l~v~~~d~~V~v~D~~~~t~~~~~~i--------------------------~-~g~~ 223 (543)
T 1nir_A 181 VHISRMSASG----------RYLLVIGRDARIDMIDLWAKEPTKVAEI--------------------------K-IGIE 223 (543)
T ss_dssp EEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCEEEEEE--------------------------E-CCSE
T ss_pred cceEEECCCC----------CEEEEECCCCeEEEEECcCCCCcEEEEE--------------------------e-cCCC
Confidence 6689999999 89999999999999999 777777665 2 1223
Q ss_pred cceEEEEccCC----CCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCC-----------CCCeeEEEEccCCCCC
Q 008363 181 IPLTMEWSTSP----PHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSAD-----------TLPIRAVSWAPAESDS 244 (568)
Q Consensus 181 V~~~v~~s~~~----~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----------~~~V~~v~~~p~~~~~ 244 (568)
. ..++|+ | +|++|++++. +++|.|||..+. +++..+..+ ...+..+.++|++
T Consensus 224 p-~~va~s--p~~~~dg~~l~v~~~~~~~v~v~D~~t~------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~--- 291 (543)
T 1nir_A 224 A-RSVESS--KFKGYEDRYTIAGAYWPPQFAIMDGETL------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH--- 291 (543)
T ss_dssp E-EEEEEC--CSTTCTTTEEEEEEEESSEEEEEETTTC------CEEEEEECCEECSSSCCEESCCCEEEEEECSSS---
T ss_pred c-ceEEeC--CCcCCCCCEEEEEEccCCeEEEEecccc------ccceeecccCcccCccccccCCceEEEEECCCC---
Confidence 3 889998 7 8999998884 899999998866 677766542 2378999999987
Q ss_pred CCCcEEEEEcCCC-EEEEECCCCCcce-eeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCcc
Q 008363 245 DSANVILTAGHGG-LKFWDIRDPFRPL-WDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 245 ~~~~~las~s~d~-v~lwD~~~~~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
+.++++...++ |.+||+.+..... ..+ .+...+..+.|+|+|++|++++ .+++|.+||+. +|+++
T Consensus 292 --~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~--------tg~l~- 359 (543)
T 1nir_A 292 --PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK--------DRRLS- 359 (543)
T ss_dssp --SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT--------TTEEE-
T ss_pred --CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECC--------CCeEE-
Confidence 36778888888 9999998763222 233 3556678999999999887765 48999999994 35443
Q ss_pred CccccceEEEec----CCCCEEEEEEecC-CCEEEEEe-CCCeEEEEEcCC-------CeeeccCCCCCcceeeeecccC
Q 008363 322 GTKQQGLHLVNC----SSFAIWSVQVSRL-TGMVAYCS-ADGTVHRFQLTA-------KAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 322 ~~~~~~l~~~~~----h~~~V~~l~~sp~-~~~l~s~s-~Dg~v~iwd~~~-------~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
..+.. |.+....+ ++|+ +.+++++. .|++|.+||+.+ .++.+....+. ...+...+++
T Consensus 360 -------~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g-~~~~~v~~~p 430 (543)
T 1nir_A 360 -------ALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG-GGSLFIKTHP 430 (543)
T ss_dssp -------EEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC-SCCCCEECCT
T ss_pred -------EeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC-CCceEEEcCC
Confidence 44543 55444443 5787 56777775 689999999987 44433322221 1122335788
Q ss_pred CCCceEEcccCC
Q 008363 389 DESAITVNTPLD 400 (568)
Q Consensus 389 ~~~~i~~~~~~~ 400 (568)
++..+.+.+++.
T Consensus 431 dg~~l~v~~~~~ 442 (543)
T 1nir_A 431 KSSHLYVDTTFN 442 (543)
T ss_dssp TCCEEEECCTTC
T ss_pred CCCcEEEecCCC
Confidence 888888876543
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.73 E-value=1.9e-15 Score=152.31 Aligned_cols=222 Identities=11% Similarity=0.039 Sum_probs=161.6
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeC-------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG-------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~-------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
+..++|+|++ ++|++++. ++.|.+||..+++.+..+..
T Consensus 43 ~~~~~~s~dg----------~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------------- 87 (353)
T 3vgz_A 43 AYEMAYSQQE----------NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN------------------------- 87 (353)
T ss_dssp EEEEEEETTT----------TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-------------------------
T ss_pred ccceEECCCC----------CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-------------------------
Confidence 3499999999 67777764 56899999999887766411
Q ss_pred CCcCccceEEEEccCCCCCEE-EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC---------eeEEEEccCCCCCC
Q 008363 176 GGTQSIPLTMEWSTSPPHDYL-LAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP---------IRAVSWAPAESDSD 245 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l-~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~---------V~~v~~~p~~~~~~ 245 (568)
...+ ..++|+ ++|+++ +++..++.|.+||+.++ +.+..+..+... +.+++|+|++
T Consensus 88 --~~~~-~~~~~s--~dg~~l~v~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg---- 152 (353)
T 3vgz_A 88 --DLKP-FGATIN--NTTQTLWFGNTVNSAVTAIDAKTG------EVKGRLVLDDRKRTEEVRPLQPRELVADDAT---- 152 (353)
T ss_dssp --SSCC-CSEEEE--TTTTEEEEEETTTTEEEEEETTTC------CEEEEEESCCCCCCSSCCCCEEEEEEEETTT----
T ss_pred --CCCc-ceEEEC--CCCCEEEEEecCCCEEEEEeCCCC------eeEEEEecCCCccccccCCCCCceEEECCCC----
Confidence 1123 778888 888855 45555899999999876 666666554432 7889999998
Q ss_pred CCcEEEEEc--CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 246 SANVILTAG--HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 246 ~~~~las~s--~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
++++.++ .++ |.+||+.+. ..+..+..+...+..++|+|++++|++++.++.|.+||+.. ++.+
T Consensus 153 --~~l~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--------~~~~-- 219 (353)
T 3vgz_A 153 --NTVYISGIGKESVIWVVDGGNI-KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD--------NKIL-- 219 (353)
T ss_dssp --TEEEEEEESSSCEEEEEETTTT-EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT--------TEEE--
T ss_pred --CEEEEEecCCCceEEEEcCCCC-ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC--------CeEE--
Confidence 5555554 466 999999977 66666664566688999999999999999999999999943 4332
Q ss_pred ccccceEEEe----cCCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 323 TKQQGLHLVN----CSSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 323 ~~~~~l~~~~----~h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
..+. ++...+.+++|+|++++|++++. ++.|.+||+.+++......... + .+..+++++..+.+.
T Consensus 220 ------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~--~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 220 ------SRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-S--LAVLFNPARNEAYVT 289 (353)
T ss_dssp ------EEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-C--CCEEEETTTTEEEEE
T ss_pred ------EEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-C--ceEEECCCCCEEEEE
Confidence 3333 25567889999999987766665 5999999998877654432211 1 334677787766554
No 139
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.72 E-value=7.2e-16 Score=165.46 Aligned_cols=199 Identities=10% Similarity=0.055 Sum_probs=153.9
Q ss_pred EEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEE
Q 008363 107 KWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTME 186 (568)
Q Consensus 107 ~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~ 186 (568)
.|+|++ .++++++.|++|.+||..+++++.++. .++. + .+++
T Consensus 144 ~~~p~~----------~~~vs~~~d~~V~v~D~~t~~~~~~i~-------------------------~g~~--~-~~v~ 185 (543)
T 1nir_A 144 DLDLPN----------LFSVTLRDAGQIALVDGDSKKIVKVID-------------------------TGYA--V-HISR 185 (543)
T ss_dssp CCCGGG----------EEEEEEGGGTEEEEEETTTCCEEEEEE-------------------------CSTT--E-EEEE
T ss_pred ccCCCC----------EEEEEEcCCCeEEEEECCCceEEEEEe-------------------------cCcc--c-ceEE
Confidence 378887 789999999999999999998887762 1333 4 8899
Q ss_pred EccCCCCCEEEEEeCCCeEEEEEc--cCCCCCCCCceeEEeeCCCCCeeEEEEcc----CCCCCCCCcEEEEEcC-CC-E
Q 008363 187 WSTSPPHDYLLAGCHDGTVALWKF--VASDSSIDSRPLLCFSADTLPIRAVSWAP----AESDSDSANVILTAGH-GG-L 258 (568)
Q Consensus 187 ~s~~~~g~~l~sgs~Dg~I~iwd~--~~~~~~~~~~~~~~~~~h~~~V~~v~~~p----~~~~~~~~~~las~s~-d~-v 258 (568)
|+ |+|++|++++.|++|.+||+ .+. +++..+. +...+..++|+| ++ +++++++. ++ |
T Consensus 186 ~s--pdg~~l~v~~~d~~V~v~D~~~~t~------~~~~~i~-~g~~p~~va~sp~~~~dg------~~l~v~~~~~~~v 250 (543)
T 1nir_A 186 MS--ASGRYLLVIGRDARIDMIDLWAKEP------TKVAEIK-IGIEARSVESSKFKGYED------RYTIAGAYWPPQF 250 (543)
T ss_dssp EC--TTSCEEEEEETTSEEEEEETTSSSC------EEEEEEE-CCSEEEEEEECCSTTCTT------TEEEEEEEESSEE
T ss_pred EC--CCCCEEEEECCCCeEEEEECcCCCC------cEEEEEe-cCCCcceEEeCCCcCCCC------CEEEEEEccCCeE
Confidence 98 89999999999999999999 544 6777776 455689999999 98 78888875 56 9
Q ss_pred EEEECCCCCcceeeeCC----------CCC-CeEEEEEcCCCCEEEE-EeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 259 KFWDIRDPFRPLWDIHP----------APK-FIYGLDWLPDPGCVIL-SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~----------h~~-~i~~l~~sp~~~~l~s-~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
.+||..+. .++..+.. |.. .+..+.++|++..+++ ...++.|.+||+.. ++.+ .
T Consensus 251 ~v~D~~t~-~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~--------~~~l-----~ 316 (543)
T 1nir_A 251 AIMDGETL-EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD--------IDNL-----T 316 (543)
T ss_dssp EEEETTTC-CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT--------SSSC-----E
T ss_pred EEEecccc-ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC--------CCcc-----e
Confidence 99999877 66655543 223 6899999998776555 46689999999954 2221 1
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~ 374 (568)
+..+ .+...+..+.|+|++++|++++ .+++|.+||+.++++.....
T Consensus 317 -~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~ 363 (543)
T 1nir_A 317 -VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD 363 (543)
T ss_dssp -EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred -eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence 1233 3566678899999999776554 68999999999988766433
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=7e-15 Score=148.33 Aligned_cols=239 Identities=13% Similarity=0.077 Sum_probs=153.2
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCCCcee--eEEeccCCccCCCCceEEEeeccee
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPLLRTM--KAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~~~~~--~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
..+...+. .++|+|++ + |++++. ++.|.+|++.++... ..+
T Consensus 36 ~~~~~~p~-~~a~spdg----------~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~---------------------- 81 (347)
T 3hfq_A 36 LAATQNPT-YLALSAKD----------C-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV---------------------- 81 (347)
T ss_dssp EEECSCCC-CEEECTTC----------E-EEEEEEETTEEEEEEEEEETTEEEEEEEE----------------------
T ss_pred eeccCCcc-eEEEccCC----------e-EEEEEecCCCceEEEEEecCCcEEEeeee----------------------
Confidence 44444344 89999999 7 554443 689999999765432 111
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC---------CCCCeeEEEEccC
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA---------DTLPIRAVSWAPA 240 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~---------h~~~V~~v~~~p~ 240 (568)
..+...+ ..++|+ |+|++|++++ .+++|.+|++.... ....+..+.. +...+.+++|+|+
T Consensus 82 ----~~~~~~p-~~~a~s--pdg~~l~~~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spd 151 (347)
T 3hfq_A 82 ----VAPGTPP-AYVAVD--EARQLVYSANYHKGTAEVMKIAADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPD 151 (347)
T ss_dssp ----EEESCCC-SEEEEE--TTTTEEEEEETTTTEEEEEEECTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTT
T ss_pred ----ecCCCCC-EEEEEC--CCCCEEEEEeCCCCEEEEEEeCCCC---CeeecceeecCCCCCCccccCCCceEEEECCC
Confidence 2234444 889999 8999888887 78999999996321 1133333322 1234889999999
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcc--eeeeCC-CCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCC
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRP--LWDIHP-APKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~--~~~~~~-h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~ 315 (568)
+ +++++...++ |.+||+...... +..+.. ....+..++|+|+|++|+++ ..++.|.+|++...
T Consensus 152 g------~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~------ 219 (347)
T 3hfq_A 152 N------RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ------ 219 (347)
T ss_dssp S------CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT------
T ss_pred C------cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC------
Confidence 9 6777777777 999999832221 222222 23357889999999977775 45899999998531
Q ss_pred CCCCccCccccceEEEecCC------CCEEEEEEecCCCEE-EEEeCCCeEEEEEcCCC-eee--ccCCC-CCcceeeee
Q 008363 316 TGKPFAGTKQQGLHLVNCSS------FAIWSVQVSRLTGMV-AYCSADGTVHRFQLTAK-AVE--KDHSR-NRPMHFLCG 384 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~------~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~~-~~~--~~~~~-~~~~~~~~~ 384 (568)
+|+. ..+..+.... ..+..++|+|+|++| ++...++.|.+|++... ... ..... ...+ ...
T Consensus 220 ~g~~------~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~--~~~ 291 (347)
T 3hfq_A 220 TGAF------TQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP--RDF 291 (347)
T ss_dssp TTEE------EEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC--CEE
T ss_pred CCce------EEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc--CeE
Confidence 2322 1222333222 358899999999977 55667899999999632 211 11111 1122 233
Q ss_pred cccCCCCceEEccc
Q 008363 385 SVTEDESAITVNTP 398 (568)
Q Consensus 385 s~~~~~~~i~~~~~ 398 (568)
++++++..|.+...
T Consensus 292 ~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQ 305 (347)
T ss_dssp EECTTSSEEEEEET
T ss_pred EECCCCCEEEEEEc
Confidence 67888887766543
No 141
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.71 E-value=3.9e-15 Score=150.20 Aligned_cols=225 Identities=9% Similarity=0.065 Sum_probs=145.1
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
..|...+. .++|+|++ ++|++++ .++.|.+|++........+..... .+.. +. .
T Consensus 82 ~~~~~~p~-~~a~spdg----------~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~-------p~------~ 136 (347)
T 3hfq_A 82 VAPGTPPA-YVAVDEAR----------QLVYSANYHKGTAEVMKIAADGALTLTDTVQH-SGHG-------PR------P 136 (347)
T ss_dssp EEESCCCS-EEEEETTT----------TEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-CCCC-------SS------T
T ss_pred ecCCCCCE-EEEECCCC----------CEEEEEeCCCCEEEEEEeCCCCCeeecceeec-CCCC-------CC------c
Confidence 44555344 89999999 7788777 789999999964222211100000 0000 00 0
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEcc-CCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFV-ASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~-~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las 252 (568)
..+...+ .+++|+ |+|++++++..++.|.+|++. .+. ...+..+..+ ...+..++|+|++ ++++.
T Consensus 137 ~~~~~~~-~~~~~s--pdg~l~v~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~g~~p~~~~~spdg------~~l~v 203 (347)
T 3hfq_A 137 EQDGSHI-HYTDLT--PDNRLAVIDLGSDKVYVYNVSDAGQ----LSEQSVLTMEAGFGPRHLVFSPDG------QYAFL 203 (347)
T ss_dssp TCSSCCE-EEEEEC--TTSCEEEEETTTTEEEEEEECTTSC----EEEEEEEECCTTCCEEEEEECTTS------SEEEE
T ss_pred cccCCCc-eEEEEC--CCCcEEEEeCCCCEEEEEEECCCCc----EEEeeeEEcCCCCCCceEEECCCC------CEEEE
Confidence 1122334 789999 888877777778999999998 331 1223333333 3367889999999 65554
Q ss_pred -EcCCC-EEEEECCCCC-c--ceeeeCCCC------CCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCc
Q 008363 253 -AGHGG-LKFWDIRDPF-R--PLWDIHPAP------KFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 253 -~s~d~-v~lwD~~~~~-~--~~~~~~~h~------~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
...++ |.+|++.... . .+..+.... ..+..++|+|+|++|+++ ..++.|.+||+.. .|..
T Consensus 204 ~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~-------~g~~- 275 (347)
T 3hfq_A 204 AGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA-------DGHL- 275 (347)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG-------GGCE-
T ss_pred EeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC-------CCcE-
Confidence 55566 9999987521 1 122232222 347899999999988554 5689999999952 1211
Q ss_pred cCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC-CeEEEEEc--CCCeeec
Q 008363 321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD-GTVHRFQL--TAKAVEK 371 (568)
Q Consensus 321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D-g~v~iwd~--~~~~~~~ 371 (568)
..+..+..+...+..++|+|++++|++++.+ +.|.+|++ .++.+..
T Consensus 276 -----~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 276 -----TLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp -----EEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred -----EEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 3345666666778999999999988888765 89999955 4555443
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=9.6e-15 Score=146.03 Aligned_cols=230 Identities=12% Similarity=0.115 Sum_probs=154.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCce-eeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRT-MKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~-~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.. .++|+|++ ++|++++ .++.|.+||+.+++. ...+ ..+..
T Consensus 42 ~~-~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~~~~~~~--------------------------~~~~~ 84 (331)
T 3u4y_A 42 FV-DTAITSDC----------SNVVVTSDFCQTLVQIETQLEPPKVVAI--------------------------QEGQS 84 (331)
T ss_dssp EE-EEEECSSS----------CEEEEEESTTCEEEEEECSSSSCEEEEE--------------------------EECSS
T ss_pred cc-eEEEcCCC----------CEEEEEeCCCCeEEEEECCCCceeEEec--------------------------ccCCC
Confidence 55 89999999 6555555 489999999998776 4443 23333
Q ss_pred ccceEEEEccCCCCCEEEEEeCCC---eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDG---TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH- 255 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg---~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~- 255 (568)
.. .+++|+ |+|++|+++..++ .|.+||+.++ ..+..+.. ...+.+++|+|++. .++++...
T Consensus 85 ~~-~~~~~s--~dg~~l~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~spdg~-----~l~~~~~~~ 149 (331)
T 3u4y_A 85 SM-ADVDIT--PDDQFAVTVTGLNHPFNMQSYSFLKN------KFISTIPI-PYDAVGIAISPNGN-----GLILIDRSS 149 (331)
T ss_dssp CC-CCEEEC--TTSSEEEECCCSSSSCEEEEEETTTT------EEEEEEEC-CTTEEEEEECTTSS-----CEEEEEETT
T ss_pred Cc-cceEEC--CCCCEEEEecCCCCcccEEEEECCCC------CeEEEEEC-CCCccceEECCCCC-----EEEEEecCC
Confidence 43 448998 8899998655553 8999999866 66666654 34579999999982 35555444
Q ss_pred CC-EEEEECCCCCcce---eeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 256 GG-LKFWDIRDPFRPL---WDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~---~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+. |.+|++....... .........+..++|+|+|++|++++ .++.|++||+.. ++.. +.+..
T Consensus 150 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~--------~~~~-----~~~~~ 216 (331)
T 3u4y_A 150 ANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQN--------PENI-----TLLNA 216 (331)
T ss_dssp TTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSS--------TTSC-----EEEEE
T ss_pred CceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCC--------Cccc-----ceeee
Confidence 56 9999998543221 11113345579999999999777665 589999999943 4431 12345
Q ss_pred EecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeecc--CCCC----Cccee--eeecccCCCCceEEcc
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKD--HSRN----RPMHF--LCGSVTEDESAITVNT 397 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~--~~~~----~~~~~--~~~s~~~~~~~i~~~~ 397 (568)
+..+ ..+..++|+|+|++|++++ .++.|.+||+.++++... .... ..+.. ...++++++..+.+..
T Consensus 217 ~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~ 291 (331)
T 3u4y_A 217 VGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISA 291 (331)
T ss_dssp EECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEE
T ss_pred ccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEec
Confidence 5543 5668899999999776554 578899999998876221 0110 11111 1236778887776543
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=4e-15 Score=148.67 Aligned_cols=202 Identities=18% Similarity=0.103 Sum_probs=145.2
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+..++|+|++. .+++++..++.|.+||+.+++.+..+.... ...|...+
T Consensus 36 ~~~~~~s~dg~---------~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------------------~~~~~~~~- 84 (337)
T 1pby_B 36 PMVPMVAPGGR---------IAYATVNKSESLVKIDLVTGETLGRIDLST---------------------PEERVKSL- 84 (337)
T ss_dssp CCCEEECTTSS---------EEEEEETTTTEEEEEETTTCCEEEEEECCB---------------------TTEEEECT-
T ss_pred ccceEEcCCCC---------EEEEEeCCCCeEEEEECCCCCeEeeEEcCC---------------------cccccccc-
Confidence 34899999993 344566668999999999987776542110 00012244
Q ss_pred eEEEEccCCCCCEEEEEe------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 183 LTMEWSTSPPHDYLLAGC------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..++|+ |+|++|++++ .++.|.+||+.+. +.+..+.. ...+.+++|+|++ ++|
T Consensus 85 ~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~------~~~~~~~~-~~~~~~~~~s~dg------~~l 149 (337)
T 1pby_B 85 FGAALS--PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL------SRRKAFEA-PRQITMLAWARDG------SKL 149 (337)
T ss_dssp TCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT------EEEEEEEC-CSSCCCEEECTTS------SCE
T ss_pred cceEEC--CCCCEEEEEecccccccccccccCceEEEEECCCC------cEEEEEeC-CCCcceeEECCCC------CEE
Confidence 789999 8898988886 6799999999865 56666654 4568889999998 666
Q ss_pred EEEcCCC-EEEEECCCCCcceeeeCC------------------------------------------------------
Q 008363 251 LTAGHGG-LKFWDIRDPFRPLWDIHP------------------------------------------------------ 275 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~~~~~~~~~------------------------------------------------------ 275 (568)
+++ ++ |.+||+.+. ..+..+..
T Consensus 150 ~~~--~~~i~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 226 (337)
T 1pby_B 150 YGL--GRDLHVMDPEAG-TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDL 226 (337)
T ss_dssp EEE--SSSEEEEETTTT-EEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEET
T ss_pred EEe--CCeEEEEECCCC-cEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeC
Confidence 666 45 999999865 33222211
Q ss_pred ------------CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363 276 ------------APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV 343 (568)
Q Consensus 276 ------------h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~ 343 (568)
+...+.+++|+|++++|+++ ++.|++||+.. ++. +..+.. ...+.+++|
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~--------~~~--------~~~~~~-~~~~~~~~~ 287 (337)
T 1pby_B 227 ETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEK--------NAS--------IKRVPL-PHSYYSVNV 287 (337)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTT--------TEE--------EEEEEC-SSCCCEEEE
T ss_pred CCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCC--------CcC--------cceecC-CCceeeEEE
Confidence 11234569999999999988 79999999943 433 234443 345789999
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 344 SRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 344 sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+|++++|++++.++.|.+||+.+++....
T Consensus 288 s~dg~~l~~~~~~~~i~v~d~~~~~~~~~ 316 (337)
T 1pby_B 288 STDGSTVWLGGALGDLAAYDAETLEKKGQ 316 (337)
T ss_dssp CTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred CCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence 99999999999999999999987765443
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.70 E-value=3.9e-15 Score=148.90 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=150.0
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeC-
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH- 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~- 201 (568)
.++++++.++.|.+||+.+++....+ ..+... + +++|+ |+|++|++++.
T Consensus 11 ~~~v~~~~~~~v~~~d~~~~~~~~~~--------------------------~~~~~~-~-~~~~s--~dg~~l~~~~~~ 60 (331)
T 3u4y_A 11 FGIVVEQHLRRISFFSTDTLEILNQI--------------------------TLGYDF-V-DTAIT--SDCSNVVVTSDF 60 (331)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEE--------------------------ECCCCE-E-EEEEC--SSSCEEEEEEST
T ss_pred EEEEEecCCCeEEEEeCcccceeeeE--------------------------EccCCc-c-eEEEc--CCCCEEEEEeCC
Confidence 56888889999999999998877664 222222 3 78888 88886666665
Q ss_pred CCeEEEEEccCCCCCCCCce-eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----CEEEEECCCCCcceeeeCCC
Q 008363 202 DGTVALWKFVASDSSIDSRP-LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----GLKFWDIRDPFRPLWDIHPA 276 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----~v~lwD~~~~~~~~~~~~~h 276 (568)
++.|.+||+.++ .. ...+..+..++.+++|+|++ ++|+++..+ .|.+||+.+. ..+..+..
T Consensus 61 ~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~~~~i~v~d~~~~-~~~~~~~~- 126 (331)
T 3u4y_A 61 CQTLVQIETQLE------PPKVVAIQEGQSSMADVDITPDD------QFAVTVTGLNHPFNMQSYSFLKN-KFISTIPI- 126 (331)
T ss_dssp TCEEEEEECSSS------SCEEEEEEECSSCCCCEEECTTS------SEEEECCCSSSSCEEEEEETTTT-EEEEEEEC-
T ss_pred CCeEEEEECCCC------ceeEEecccCCCCccceEECCCC------CEEEEecCCCCcccEEEEECCCC-CeEEEEEC-
Confidence 899999999876 44 66666777776669999999 777765555 4999999877 55555543
Q ss_pred CCCeEEEEEcCCCCEEEEE-eCCCc-EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE-E
Q 008363 277 PKFIYGLDWLPDPGCVILS-FDDGA-MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY-C 353 (568)
Q Consensus 277 ~~~i~~l~~sp~~~~l~s~-~~dg~-I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s-~ 353 (568)
.....+++|+|+|++|+++ ..++. |.+|++.. .|.... .....+ .+...+..++|+|+|++|++ +
T Consensus 127 ~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~-------~g~~~~----~~~~~~-~~~~~~~~~~~spdg~~l~v~~ 194 (331)
T 3u4y_A 127 PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA-------DGVLFD----TGQEFI-SGGTRPFNITFTPDGNFAFVAN 194 (331)
T ss_dssp CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT-------TCCEEE----EEEEEE-CSSSSEEEEEECTTSSEEEEEE
T ss_pred CCCccceEECCCCCEEEEEecCCCceEEEEEECC-------CCcEee----cCCccc-cCCCCccceEECCCCCEEEEEe
Confidence 3456899999999877665 55688 99999953 222210 001122 34456799999999986554 4
Q ss_pred eCCCeEEEEEcCCCee---eccCCCCCcceeeeecccCCCCceEEc
Q 008363 354 SADGTVHRFQLTAKAV---EKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 354 s~Dg~v~iwd~~~~~~---~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
..++.|.+||+.++.. .........+ ....+++++..+.+.
T Consensus 195 ~~~~~v~v~d~~~~~~~~~~~~~~~~~~~--~~~~~spdg~~l~v~ 238 (331)
T 3u4y_A 195 LIGNSIGILETQNPENITLLNAVGTNNLP--GTIVVSRDGSTVYVL 238 (331)
T ss_dssp TTTTEEEEEECSSTTSCEEEEEEECSSCC--CCEEECTTSSEEEEE
T ss_pred CCCCeEEEEECCCCcccceeeeccCCCCC--ceEEECCCCCEEEEE
Confidence 5689999999987765 3322222222 233577787766543
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.70 E-value=5.1e-15 Score=148.24 Aligned_cols=205 Identities=9% Similarity=0.099 Sum_probs=138.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCc---eeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLR---TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~---~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
.+..++|+|++ ++|++++ .++.|.+||+..+. ....+ ..+
T Consensus 85 ~~~~~~~s~dg----------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--------------------------~~~ 128 (343)
T 1ri6_A 85 SLTHISTDHQG----------QFVFVGSYNAGNVSVTRLEDGLPVGVVDVV--------------------------EGL 128 (343)
T ss_dssp CCSEEEECTTS----------SEEEEEETTTTEEEEEEEETTEEEEEEEEE--------------------------CCC
T ss_pred CCcEEEEcCCC----------CEEEEEecCCCeEEEEECCCCccccccccc--------------------------cCC
Confidence 34499999999 6666555 48899999995322 22221 222
Q ss_pred cCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccC-CCCCCCCceeE--EeeC-CCCCeeEEEEccCCCCCCCCcEE-E
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVA-SDSSIDSRPLL--CFSA-DTLPIRAVSWAPAESDSDSANVI-L 251 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~-~~~~~~~~~~~--~~~~-h~~~V~~v~~~p~~~~~~~~~~l-a 251 (568)
..+ .+++|+ |+|++|++++ .++.|.+||+.. +.. .... .+.. ....+..++|+|++ .+| +
T Consensus 129 -~~~-~~~~~s--~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~pdg------~~l~~ 194 (343)
T 1ri6_A 129 -DGC-HSANIS--PDNRTLWVPALKQDRICLFTVSDDGHL----VAQDPAEVTTVEGAGPRHMVFHPNE------QYAYC 194 (343)
T ss_dssp -TTB-CCCEEC--TTSSEEEEEEGGGTEEEEEEECTTSCE----EEEEEEEEECSTTCCEEEEEECTTS------SEEEE
T ss_pred -CCc-eEEEEC--CCCCEEEEecCCCCEEEEEEecCCCce----eeecccccccCCCCCcceEEECCCC------CEEEE
Confidence 234 889999 8898888877 899999999986 311 2222 2322 34578899999998 655 4
Q ss_pred EEcCCC-EEEEECCCCC-c--ceeeeC----CC--CCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCc
Q 008363 252 TAGHGG-LKFWDIRDPF-R--PLWDIH----PA--PKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPF 320 (568)
Q Consensus 252 s~s~d~-v~lwD~~~~~-~--~~~~~~----~h--~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~ 320 (568)
++..++ |.+||+.... . ....+. ++ ...+..++|+|++++|+++. .++.|++||+... ++..
T Consensus 195 ~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~------~~~~- 267 (343)
T 1ri6_A 195 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSED------GSVL- 267 (343)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT------SCCE-
T ss_pred EeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCC------CCce-
Confidence 555677 9999996421 1 122221 11 23567899999999888665 6999999999521 1221
Q ss_pred cCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC--CCee
Q 008363 321 AGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT--AKAV 369 (568)
Q Consensus 321 ~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~--~~~~ 369 (568)
..+..+..+.. +.+++|+|++++|++++ .|+.|.+|++. ++.+
T Consensus 268 -----~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 268 -----SKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp -----EEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred -----EEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 23345554544 78999999999888887 68999999554 5443
No 146
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=4.9e-14 Score=142.96 Aligned_cols=255 Identities=7% Similarity=0.009 Sum_probs=156.7
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCC----CcEEEEECCC--Cce--eeEEeccCC-------------ccC
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN----GSLEVWEVPL--LRT--MKAIYLSSM-------------KEG 156 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d----g~V~iwd~~~--~~~--~~~l~~~~~-------------~~~ 156 (568)
|...+. .++|+|++ ++|++++.+ +.|.+|++.. +.. +..+..+.. +..
T Consensus 48 ~~~~p~-~l~~spdg----------~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~ 116 (361)
T 3scy_A 48 EVANPS-YLIPSADG----------KFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTAN 116 (361)
T ss_dssp ECSCCC-SEEECTTS----------SEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEE
T ss_pred cCCCCc-eEEECCCC----------CEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEE
Confidence 444343 89999999 788888876 8999998865 332 222211111 122
Q ss_pred CCCceEEEeecce--ecccc------c--------CCcCccceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCC--
Q 008363 157 TDPRFVKLEPVFR--CSMLK------C--------GGTQSIPLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSI-- 217 (568)
Q Consensus 157 ~~~~~v~~~~~~~--~~~~~------~--------~h~~~V~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~-- 217 (568)
..+..+.+|+... ..... . .+...+ .+++|+ |+|++|++++ .++.|.+|++.......
T Consensus 117 ~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~ 193 (361)
T 3scy_A 117 YSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHL-HCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNK 193 (361)
T ss_dssp TTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCE-EEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTC
T ss_pred CCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcc-eEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccc
Confidence 2455666666542 10000 0 011222 679999 8898666555 58999999988552100
Q ss_pred C-Cce----eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC-EEEEECCCCC-cceeee---CCCCCCeEEEEEc
Q 008363 218 D-SRP----LLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG-LKFWDIRDPF-RPLWDI---HPAPKFIYGLDWL 286 (568)
Q Consensus 218 ~-~~~----~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~lwD~~~~~-~~~~~~---~~h~~~i~~l~~s 286 (568)
. ... ......+...+..++|+|++ +++++++ .++ |.+||+.++. ..+..+ ..+......++|+
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~~~spdg------~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s 267 (361)
T 3scy_A 194 EKFLTKGTPEAFKVAPGSGPRHLIFNSDG------KFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS 267 (361)
T ss_dssp CCCEEEEEEEEEECCTTCCEEEEEECTTS------SEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC
T ss_pred cceeecccccceecCCCCCCeEEEEcCCC------CEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC
Confidence 0 011 12222345568899999999 6666665 466 9999998552 112222 2334557899999
Q ss_pred CCCCEEEEEeCC--CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEE
Q 008363 287 PDPGCVILSFDD--GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQ 363 (568)
Q Consensus 287 p~~~~l~s~~~d--g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd 363 (568)
|||++|+++..+ +.|.+|++.. .+|+. ..+..+.. ...+.+++|+|+|++|++++ .++.|.+|+
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~------~~g~~------~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDE------TNGTL------TKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECT------TTCCE------EEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEECCCCCCEEEEEEEcC------CCCcE------EEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 999999877664 8999999953 12332 22334444 45678999999999888887 678999965
Q ss_pred c--CCCeeeccCCCCCcceeeeec
Q 008363 364 L--TAKAVEKDHSRNRPMHFLCGS 385 (568)
Q Consensus 364 ~--~~~~~~~~~~~~~~~~~~~~s 385 (568)
+ .++.+.........+...|..
T Consensus 335 ~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 335 RDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp ECTTTCCEEECSCCEECSSEEEEE
T ss_pred EECCCCcEeecceeeeCCCCeEEE
Confidence 5 456555442222333444433
No 147
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.68 E-value=1e-15 Score=166.04 Aligned_cols=196 Identities=14% Similarity=0.021 Sum_probs=143.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-C
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-Q 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~ 179 (568)
.+++++|+|+| +.||+++. ||+++||++.++...+. ..|. .
T Consensus 23 ~~~~~~~~~DG----------~~la~~s~~~g~~~lw~~~~g~~~~l---------------------------t~~~~~ 65 (582)
T 3o4h_A 23 EKYSLQGVVDG----------DKLLVVGFSEGSVNAYLYDGGETVKL---------------------------NREPIN 65 (582)
T ss_dssp CEEEEEEEETT----------TEEEEEEEETTEEEEEEEETTEEEEC---------------------------CSSCCS
T ss_pred chheeecCCCC----------CeEEEEEccCCceeEEEEcCCCcEee---------------------------eccccc
Confidence 57799999999 79998887 99999999866554322 3333 5
Q ss_pred ccceEEEEccCCCCCEEEEEeC---CCeEEEEEccC--CCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVA--SDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~--~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+ .+++|+ |+ +++++++. +....||.+.. .. ... .+..+ ..+...+|+|++ ...++++++
T Consensus 66 ~~-~~~~~s--pd-~~l~~~~~~~g~~~~~l~~~~~~~~g-----~~~-~l~~~-~~~~~~~~s~dg----~~~~~~s~~ 130 (582)
T 3o4h_A 66 SV-LDPHYG--VG-RVILVRDVSKGAEQHALFKVNTSRPG-----EEQ-RLEAV-KPMRILSGVDTG----EAVVFTGAT 130 (582)
T ss_dssp EE-CEECTT--CS-EEEEEEECSTTSCCEEEEEEETTSTT-----CCE-ECTTS-CSBEEEEEEECS----SCEEEEEEC
T ss_pred cc-ccccCC--CC-eEEEEeccCCCCcceEEEEEeccCCC-----ccc-cccCC-CCceeeeeCCCC----CeEEEEecC
Confidence 67 899999 77 77777775 55667777654 21 112 33222 234566888887 123566666
Q ss_pred CCCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 255 HGGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 255 ~d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
.+++.+||+.++ ....... +.. .+++|+|||++|++++.+ +.|++||+.. |+. ..
T Consensus 131 ~~~~~l~d~~~g-~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~--------g~~---------~~ 189 (582)
T 3o4h_A 131 EDRVALYALDGG-GLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSS--------GGL---------RV 189 (582)
T ss_dssp SSCEEEEEEETT-EEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTT--------CCC---------EE
T ss_pred CCCceEEEccCC-cEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCC--------CCc---------eE
Confidence 677779999876 4333332 222 789999999999988776 7899999843 433 46
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCeee
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKAVE 370 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~ 370 (568)
+..|...+..++|+|||++|+++..++ .|++||+.++...
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 778888999999999999999888899 8999999887765
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.67 E-value=2.2e-15 Score=167.29 Aligned_cols=225 Identities=10% Similarity=0.140 Sum_probs=154.4
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+.+++|+|++ .++++ .++.|++||+.+++.... ..+...+
T Consensus 84 v~~~~~spd~----------~~~~~--~~~~i~~~d~~~~~~~~l---------------------------~~~~~~~- 123 (706)
T 2z3z_A 84 SFRTLDAGRG----------LVVLF--TQGGLVGFDMLARKVTYL---------------------------FDTNEET- 123 (706)
T ss_dssp CEEEEETTTT----------EEEEE--ETTEEEEEETTTTEEEEE---------------------------ECCTTCC-
T ss_pred ceeEEECCCC----------eEEEE--ECCEEEEEECCCCceEEc---------------------------cCCcccc-
Confidence 5599999995 45544 359999999998765433 3344556
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccC-----CCCCCCCceeEEeeCCCCC--------------eeEEEEccCCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVA-----SDSSIDSRPLLCFSADTLP--------------IRAVSWAPAESD 243 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~h~~~--------------V~~v~~~p~~~~ 243 (568)
.+++|+ |+|++|+++ .|+.|.+||+.+ + ........+... +.+++|+|++
T Consensus 124 ~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g------~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-- 192 (706)
T 2z3z_A 124 ASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMS------RAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-- 192 (706)
T ss_dssp TTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCC------CCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS--
T ss_pred cCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCC------CcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC--
Confidence 788999 899999985 589999999987 5 333323233332 5899999999
Q ss_pred CCCCcEEEEEc---------------------------------CCC-EEEEECCCCCcceeee--CCCCCCeEEEEEcC
Q 008363 244 SDSANVILTAG---------------------------------HGG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLP 287 (568)
Q Consensus 244 ~~~~~~las~s---------------------------------~d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp 287 (568)
++|++++ .+. |++||+.++ ...... ..|...+.+++|+|
T Consensus 193 ----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~~~~~~~~sp 267 (706)
T 2z3z_A 193 ----SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG-KTVYLQTGEPKEKFLTNLSWSP 267 (706)
T ss_dssp ----SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-EEEECCCCSCTTCEEEEEEECT
T ss_pred ----CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-ceEeeccCCCCceeEeeEEEEC
Confidence 8888886 335 999999876 333222 25667899999999
Q ss_pred CCCEEEEEeCCC-----cEEEEEccccccCCCCCCCCccCccccceEEEecCCC---CEEEEEEec--CCCEEEEEeCCC
Q 008363 288 DPGCVILSFDDG-----AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF---AIWSVQVSR--LTGMVAYCSADG 357 (568)
Q Consensus 288 ~~~~l~s~~~dg-----~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~---~V~~l~~sp--~~~~l~s~s~Dg 357 (568)
||++|++++.++ .|++||+.. |+.. ..+.. ..+.. .+.+++|+| +|++|++++.||
T Consensus 268 dg~~l~~~~~~~~~~~~~v~~~d~~~--------g~~~-----~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 268 DENILYVAEVNRAQNECKVNAYDAET--------GRFV-----RTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp TSSEEEEEEECTTSCEEEEEEEETTT--------CCEE-----EEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCEEEEEEeCCCCCeeEEEEEECCC--------Ccee-----eEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 999999987765 899999843 4211 11111 12222 246789999 999999999999
Q ss_pred eEEEEEcC-CCeeeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 358 TVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 358 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
.++||.+. ++...............+..+++++..|.+..
T Consensus 334 ~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 334 WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 99999876 33333322222222222347888888776543
No 149
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.67 E-value=7e-16 Score=171.70 Aligned_cols=228 Identities=9% Similarity=0.075 Sum_probs=150.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC---cc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ---SI 181 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~---~V 181 (568)
+++|+|++ .++++ +.|+.|++||+.+++....+ .+|.. .+
T Consensus 20 ~~~~s~dg----------~~~~~-~~d~~i~~~~~~~g~~~~~~--------------------------~~~~~~~~~~ 62 (719)
T 1z68_A 20 FPNWISGQ----------EYLHQ-SADNNIVLYNIETGQSYTIL--------------------------SNRTMKSVNA 62 (719)
T ss_dssp CCEESSSS----------EEEEE-CTTSCEEEEESSSCCEEEEE--------------------------CHHHHHTTTC
T ss_pred ccEECCCC----------eEEEE-cCCCCEEEEEcCCCcEEEEE--------------------------ccccccccce
Confidence 78999999 55554 46999999999998876554 22222 36
Q ss_pred ceEEEEccCCCCCEEEEEeC---------CCeEEEEEccCCCCCCCCcee--EEeeCCCCCeeEEEEccCCCCCCCCcEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCH---------DGTVALWKFVASDSSIDSRPL--LCFSADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~---------Dg~I~iwd~~~~~~~~~~~~~--~~~~~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.+++|+ |||++|++++. |+.|++||+.++ +.+ ..+ ...+..++|+|+| +.|
T Consensus 63 -~~~~~S--pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g------~~~~~~~l---~~~~~~~~~SPDG------~~l 124 (719)
T 1z68_A 63 -SNYGLS--PDRQFVYLESDYSKLWRYSYTATYYIYDLSNG------EFVRGNEL---PRPIQYLCWSPVG------SKL 124 (719)
T ss_dssp -SEEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------EECCSSCC---CSSBCCEEECSST------TCE
T ss_pred -eeEEEC--CCCCeEEEEecCceeEEeecceEEEEEECCCC------ccccceec---CcccccceECCCC------CEE
Confidence 899999 99999999886 799999999876 331 112 3568899999999 788
Q ss_pred EEEcCCCEEEEECCCCCcceeeeCCCCCCe-----------------EEEEEcCCCCEEEEEeCCC--------------
Q 008363 251 LTAGHGGLKFWDIRDPFRPLWDIHPAPKFI-----------------YGLDWLPDPGCVILSFDDG-------------- 299 (568)
Q Consensus 251 as~s~d~v~lwD~~~~~~~~~~~~~h~~~i-----------------~~l~~sp~~~~l~s~~~dg-------------- 299 (568)
|.+..+.|++||+.++........++...| .+++|+|||++|++++.|.
T Consensus 125 a~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~ 204 (719)
T 1z68_A 125 AYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDE 204 (719)
T ss_dssp EEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSS
T ss_pred EEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCC
Confidence 888754599999987632211222333322 4899999999999987642
Q ss_pred --------------------cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCC---
Q 008363 300 --------------------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSAD--- 356 (568)
Q Consensus 300 --------------------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~D--- 356 (568)
.|++||+.. ++.........-..+.+|...+..++|+|+++++++....
T Consensus 205 ~~~~~~~~~yp~~g~~~~~~~l~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~ 276 (719)
T 1z68_A 205 QYPRTINIPYPKAGAKNPVVRIFIIDTTY--------PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQN 276 (719)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEESSC--------HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTT
T ss_pred CCccceeecCCCCCCCCCeeEEEEEECCC--------CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccC
Confidence 678888843 2210000000001234678889999999998777775433
Q ss_pred -CeEEEEE----cCCCeeeccCC---CCCcceee-----eecccCCCCceEE
Q 008363 357 -GTVHRFQ----LTAKAVEKDHS---RNRPMHFL-----CGSVTEDESAITV 395 (568)
Q Consensus 357 -g~v~iwd----~~~~~~~~~~~---~~~~~~~~-----~~s~~~~~~~i~~ 395 (568)
..|++|| +.++....... ......+. ...+++++..+.+
T Consensus 277 ~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~ 328 (719)
T 1z68_A 277 VSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK 328 (719)
T ss_dssp EEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred eEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence 2488899 77665543321 01111111 3467788886654
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.66 E-value=3.5e-15 Score=166.03 Aligned_cols=227 Identities=11% Similarity=0.103 Sum_probs=152.4
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCC---------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
+.+++|+|+| ++||+++.+ +.|.+||+.+++. ..+..
T Consensus 63 v~~~~~SpDg----------~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~----------------------- 108 (723)
T 1xfd_A 63 AIRYEISPDR----------EYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDP----------------------- 108 (723)
T ss_dssp CSEEEECTTS----------SEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCC-----------------------
T ss_pred cceEEECCCC----------CEEEEEecCccceeecceeeEEEEECCCCce-EeccC-----------------------
Confidence 5599999999 799999875 7888999998765 22211
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCe------------------eEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPI------------------RAV 235 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V------------------~~v 235 (568)
..+|...+ ..++|+ |+|+.||.++. +.|++||+.++ ........+...+ .++
T Consensus 109 ~~~~~~~~-~~~~~S--PdG~~la~~~~-~~i~~~~~~~g------~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~ 178 (723)
T 1xfd_A 109 PEVSNAKL-QYAGWG--PKGQQLIFIFE-NNIYYCAHVGK------QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH 178 (723)
T ss_dssp TTCCSCCC-SBCCBC--SSTTCEEEEET-TEEEEESSSSS------CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred Cccccccc-cccEEC--CCCCEEEEEEC-CeEEEEECCCC------ceEEEecCCCCCceECcccceeEEEEeccCcceE
Confidence 03455556 889999 89999999986 79999999876 4444444433333 789
Q ss_pred EEccCCCCCCCCcEEEEEcCC-----------------------------------CEEEEECCCCCcceeeeCCC----
Q 008363 236 SWAPAESDSDSANVILTAGHG-----------------------------------GLKFWDIRDPFRPLWDIHPA---- 276 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d-----------------------------------~v~lwD~~~~~~~~~~~~~h---- 276 (568)
+|+|++ +.|++++.+ .|++||+.++ .....+..+
T Consensus 179 ~~SpDg------~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~-~~~~~l~~~~~~~ 251 (723)
T 1xfd_A 179 WWSPDG------TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP-THDLEMMPPDDPR 251 (723)
T ss_dssp EECTTS------SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS-CCCEECCCCCCGG
T ss_pred EECCCC------CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC-ceeEEeeCCccCC
Confidence 999999 788887643 3889999876 433444443
Q ss_pred --CCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE----EEEEec
Q 008363 277 --PKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW----SVQVSR 345 (568)
Q Consensus 277 --~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~----~l~~sp 345 (568)
...+..++|+|||++|++.+. +..|++||+. +|+.. ..+.. +...+. .++|+|
T Consensus 252 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~--------~g~~~--------~~~~~~~~~~~~~~~~~~~~sp 315 (723)
T 1xfd_A 252 MREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT--------TGVCT--------KKHEDESEAWLHRQNEEPVFSK 315 (723)
T ss_dssp GSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT--------TCCEE--------EEEEEECSSCCCCCCCCCEECT
T ss_pred CccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC--------CCcce--------EEEEeccCCEEeccCCCceEcC
Confidence 567899999999998877643 3579999984 34432 23322 333333 789999
Q ss_pred CCCEEEE--EeCCC------eEEEEE-cCCCe---eeccCCCCCcceeeeecccCCCCceEEcc
Q 008363 346 LTGMVAY--CSADG------TVHRFQ-LTAKA---VEKDHSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 346 ~~~~l~s--~s~Dg------~v~iwd-~~~~~---~~~~~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
+|+.|+. +..|+ .|++|| ..++. ...- ............+++++..|....
T Consensus 316 dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 316 DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-TSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-CCSSSCEEEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe-ecCCeEEEeeeEEcCCCCEEEEEE
Confidence 9987765 45677 567777 33333 2211 111111122236889998886543
No 151
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.66 E-value=1.2e-14 Score=146.17 Aligned_cols=222 Identities=12% Similarity=0.085 Sum_probs=152.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccC--C--------------ccCCCCceEEEeecc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSS--M--------------KEGTDPRFVKLEPVF 168 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~--~--------------~~~~~~~~v~~~~~~ 168 (568)
.+++++++ .++++++.++.|.+||+.+++.+..+..+. . +....+..+.+++..
T Consensus 4 g~~~~~~~----------~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 4 GPALKAGH----------EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp CCCCCTTC----------EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cccccCCC----------EEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC
Confidence 34566776 789999999999999999988877765443 1 222344556666654
Q ss_pred ee--ccccc-CC-----cCccceEEEEccCCCCCEEEEEeCC------------CeEEEEEccCCCCCCCCceeEEeeCC
Q 008363 169 RC--SMLKC-GG-----TQSIPLTMEWSTSPPHDYLLAGCHD------------GTVALWKFVASDSSIDSRPLLCFSAD 228 (568)
Q Consensus 169 ~~--~~~~~-~h-----~~~V~~~v~~s~~~~g~~l~sgs~D------------g~I~iwd~~~~~~~~~~~~~~~~~~h 228 (568)
+. ..... ++ ...+ ..++|+ |+|++|++++.+ +.|.+||+.++.. ...+..+..
T Consensus 74 t~~~~~~~~~~~~~~~~~~~~-~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~- 146 (349)
T 1jmx_B 74 TCKNTFHANLSSVPGEVGRSM-YSFAIS--PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFPM- 146 (349)
T ss_dssp TTEEEEEEESCCSTTEEEECS-SCEEEC--TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEEC-
T ss_pred CCcEEEEEEcccccccccccc-cceEEC--CCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeeccC-
Confidence 31 11111 22 2224 789999 889999998865 8999999986421 133344433
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCC--------------------------------
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPA-------------------------------- 276 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h-------------------------------- 276 (568)
...+.+++|+|++ ++++ ++.+ |.+||+.++ ..+..+..+
T Consensus 147 ~~~~~~~~~s~dg------~l~~-~~~~-i~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (349)
T 1jmx_B 147 PRQVYLMRAADDG------SLYV-AGPD-IYKMDVKTG-KYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIA 217 (349)
T ss_dssp CSSCCCEEECTTS------CEEE-ESSS-EEEECTTTC-CEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEE
T ss_pred CCcccceeECCCC------cEEE-ccCc-EEEEeCCCC-ceeccccccccCCccccCccceeeecCCCcceeEEeeeeee
Confidence 3468899999998 6444 4332 999999876 333333211
Q ss_pred ------------------------------------CCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 277 ------------------------------------PKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 277 ------------------------------------~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
...+..++|+| ++++|+++ ++.|++||+.. ++.
T Consensus 218 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~--------~~~ 287 (349)
T 1jmx_B 218 RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ--------RKL 287 (349)
T ss_dssp EC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTT--------TEE
T ss_pred ecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECcc--------CeE
Confidence 11345778889 99999888 88999999943 433
Q ss_pred ccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 320 FAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+..+. ....+.+++|+|++++|++++.++.|.+||+.+++...
T Consensus 288 --------~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 288 --------IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp --------EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred --------EEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 23443 23456789999999888888899999999998766543
No 152
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.66 E-value=3.1e-15 Score=166.99 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=160.0
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
...|.+ .+..++|+|+| ++||+++. +.|++||+.+++.......+. .....-.+.. ..
T Consensus 147 l~~~~~-~~~~~~~SPDG----------~~la~~~~-~~i~~~d~~~g~~~~~~~~~~------~~~~~g~~~~----v~ 204 (741)
T 2ecf_A 147 LTHGEG-FATDAKLSPKG----------GFVSFIRG-RNLWVIDLASGRQMQLTADGS------TTIGNGIAEF----VA 204 (741)
T ss_dssp CCCSSS-CEEEEEECTTS----------SEEEEEET-TEEEEEETTTTEEEECCCCCC------SSEEESCCCH----HH
T ss_pred cccCCc-ccccccCCCCC----------CEEEEEeC-CcEEEEecCCCCEEEeccCCc------cceeccccce----ee
Confidence 345555 45599999999 78998874 699999999876554321110 0000000000 00
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCCC---------------------------------eEEEEEccC-CCCCCCCc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHDG---------------------------------TVALWKFVA-SDSSIDSR 220 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg---------------------------------~I~iwd~~~-~~~~~~~~ 220 (568)
......+ .+++|+ |||++|++++.|+ .|.+||+.+ + .
T Consensus 205 ~~~~~~~-~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~------~ 275 (741)
T 2ecf_A 205 DEEMDRH-TGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA------Q 275 (741)
T ss_dssp HHHSCCC-CSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC------C
T ss_pred eeccccc-cceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC------c
Confidence 0001124 779999 8999999998776 788899886 5 3
Q ss_pred eeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcC-----CC-EEEEECCCCCcceeeeCCCCC----CeEEEEEcCC
Q 008363 221 PLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGH-----GG-LKFWDIRDPFRPLWDIHPAPK----FIYGLDWLPD 288 (568)
Q Consensus 221 ~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~~~~~~~h~~----~i~~l~~sp~ 288 (568)
...... .|...+..++| |++ ++|+.++. +. |++||+.++ .....+..+.. .+..++|+||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~-pDg------~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~~~~~~~~spd 347 (741)
T 2ecf_A 276 TQWIDLGKEQDIYLARVNW-RDP------QHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHETSPTWVPLHNSLRFLDD 347 (741)
T ss_dssp CEEECCCSCSSEEEEEEEE-EET------TEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEECSSCCCCCSCCEECTT
T ss_pred eEEecCCCCcceEEEEEEe-CCC------CEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcCCCCcCCcCCceEECCC
Confidence 333222 47788999999 999 77776543 35 999999987 44444433332 3468999999
Q ss_pred CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE-EEecCCCEEEE-EeCCC--eEEEEEc
Q 008363 289 PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV-QVSRLTGMVAY-CSADG--TVHRFQL 364 (568)
Q Consensus 289 ~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l-~~sp~~~~l~s-~s~Dg--~v~iwd~ 364 (568)
|+++++++.||.++||.+.. .|. +..+..|...|..+ .|+|+++.|+. ++.|+ .++||++
T Consensus 348 g~~~~~~~~~g~~~l~~~~~-------~~~---------~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 348 GSILWSSERTGFQHLYRIDS-------KGK---------AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAV 411 (741)
T ss_dssp SCEEEEECTTSSCEEEEECS-------SSC---------EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEE
T ss_pred CeEEEEecCCCccEEEEEcC-------CCC---------eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEE
Confidence 99888888899888888742 222 24667788888887 59999987755 44455 8999998
Q ss_pred CC-CeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 365 TA-KAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 365 ~~-~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
.. +...+.... .......++++++..+++.
T Consensus 412 ~~~g~~~~~l~~--~~~~~~~~~spdg~~l~~~ 442 (741)
T 2ecf_A 412 PLQGGQPQRLSK--APGMHSASFARNASVYVDS 442 (741)
T ss_dssp ETTCCCCEECCC--SCSEEEEEECTTSSEEEEE
T ss_pred EcCCCCeeeccc--CCCceEEEECCCCCEEEEE
Confidence 64 221222111 2223456788998887764
No 153
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.65 E-value=7.3e-15 Score=163.07 Aligned_cols=247 Identities=14% Similarity=0.120 Sum_probs=163.2
Q ss_pred EEeeccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCC-----CceeeEEeccCCccCCCCceEEEeec
Q 008363 93 VLCLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPL-----LRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 93 ~~~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~-----~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.....|.+ .+.+++|+|+| +.||++ .|+.|++|++.+ ++......... .....-.+
T Consensus 114 ~~l~~~~~-~~~~~~~SpdG----------~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~------~~~~~g~~- 174 (706)
T 2z3z_A 114 TYLFDTNE-ETASLDFSPVG----------DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT------ETLVYGQA- 174 (706)
T ss_dssp EEEECCTT-CCTTCEECTTS----------SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB------TTEEESSC-
T ss_pred EEccCCcc-cccCCcCCCCC----------CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC------CCeEcccc-
Confidence 33445555 34589999999 788885 679999999988 66554321110 00000000
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEe---------------------------------CCCeEEEEEccCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC---------------------------------HDGTVALWKFVASD 214 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs---------------------------------~Dg~I~iwd~~~~~ 214 (568)
....+...+ .++.|+ |+|++|++++ .+..|.+||+.++
T Consensus 175 -----~~~ee~~~~-~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~- 245 (706)
T 2z3z_A 175 -----VHQREFGIE-KGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATG- 245 (706)
T ss_dssp -----CGGGCTTCC-CSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTT-
T ss_pred -----hhhhhcCCC-ceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCC-
Confidence 011223345 789999 8999999988 4578999999866
Q ss_pred CCCCCceeEEe--eCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEEEECCCCCcceeee-CCCCC---CeEE
Q 008363 215 SSIDSRPLLCF--SADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKFWDIRDPFRPLWDI-HPAPK---FIYG 282 (568)
Q Consensus 215 ~~~~~~~~~~~--~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~lwD~~~~~~~~~~~-~~h~~---~i~~ 282 (568)
...... ..|...+.+++|+|++ ++|++++.+ . |++||+.++....... ..+.. .+..
T Consensus 246 -----~~~~~~~~~~~~~~~~~~~~spdg------~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 314 (706)
T 2z3z_A 246 -----KTVYLQTGEPKEKFLTNLSWSPDE------NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHP 314 (706)
T ss_dssp -----EEEECCCCSCTTCEEEEEEECTTS------SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSC
T ss_pred -----ceEeeccCCCCceeEeeEEEECCC------CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCC
Confidence 333322 2567789999999999 777776543 3 9999998762221111 12222 2467
Q ss_pred EEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEEEEEeCC-C-
Q 008363 283 LDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMVAYCSAD-G- 357 (568)
Q Consensus 283 l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l~s~s~D-g- 357 (568)
++|+| +|++|++++.|+.++||++.. .+. .+..+..|...+.. ++|+|+++.|+.++.+ +
T Consensus 315 ~~~sp~~dg~~l~~~~~~g~~~l~~~~~-------~~~--------~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~ 379 (706)
T 2z3z_A 315 LTFLPGSNNQFIWQSRRDGWNHLYLYDT-------TGR--------LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASP 379 (706)
T ss_dssp CEECTTCSSEEEEEECTTSSCEEEEEET-------TSC--------EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCT
T ss_pred ceeecCCCCEEEEEEccCCccEEEEEEC-------CCC--------EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCC
Confidence 89999 999999998999999998852 232 23566777778877 8999999877666544 4
Q ss_pred ---eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 358 ---TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 358 ---~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
.|+.||+.++....-.. ...+...++++++..++..
T Consensus 380 ~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 380 LERHFYCIDIKGGKTKDLTP---ESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp TCBEEEEEETTCCCCEESCC---SSSEEEEEECTTSSEEEEE
T ss_pred ceEEEEEEEcCCCCceeccC---CCceEEEEECCCCCEEEEE
Confidence 67777877665433211 1224456789999887765
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.65 E-value=1.9e-14 Score=143.61 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=152.2
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC-ccceEEEEccCCCCCEE-EEEe
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ-SIPLTMEWSTSPPHDYL-LAGC 200 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~-~V~~~v~~s~~~~g~~l-~sgs 200 (568)
.+|++++.++.|.+||+.+++.+..+. .++.. .+ ..++|+ |+|+++ +++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-------------------------~~~~~~~~-~~~~~s--~dg~~l~v~~~ 53 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-------------------------IADAGPTP-MVPMVA--PGGRIAYATVN 53 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-------------------------CTTCTTCC-CCEEEC--TTSSEEEEEET
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-------------------------cCCCCCCc-cceEEc--CCCCEEEEEeC
Confidence 589999999999999999988776541 12211 23 788998 888765 5566
Q ss_pred CCCeEEEEEccCCCCCCCCceeEEeeC-C----CCCeeEEEEccCCCCCCCCcEEEEEc------------CCC-EEEEE
Q 008363 201 HDGTVALWKFVASDSSIDSRPLLCFSA-D----TLPIRAVSWAPAESDSDSANVILTAG------------HGG-LKFWD 262 (568)
Q Consensus 201 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~-h----~~~V~~v~~~p~~~~~~~~~~las~s------------~d~-v~lwD 262 (568)
.++.|.+||+.++ +.+..+.. + ...+..++|+|++ ++|++++ .++ |.+||
T Consensus 54 ~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~s~dg------~~l~~~~~~~~~~~~~~~~~~~~i~v~d 121 (337)
T 1pby_B 54 KSESLVKIDLVTG------ETLGRIDLSTPEERVKSLFGAALSPDG------KTLAIYESPVRLELTHFEVQPTRVALYD 121 (337)
T ss_dssp TTTEEEEEETTTC------CEEEEEECCBTTEEEECTTCEEECTTS------SEEEEEEEEEEECSSCEEECCCEEEEEE
T ss_pred CCCeEEEEECCCC------CeEeeEEcCCcccccccccceEECCCC------CEEEEEecccccccccccccCceEEEEE
Confidence 6899999999876 55555532 1 1257889999998 7777775 456 99999
Q ss_pred CCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC---------CC----CCCCCccCcc--cc-
Q 008363 263 IRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD---------VP----ATGKPFAGTK--QQ- 326 (568)
Q Consensus 263 ~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~---------~~----~~g~~~~~~~--~~- 326 (568)
+.+. ..+..+.. ...+..++|+|++++|+++ ++.|++||+...... .+ ..|+.+.... ..
T Consensus 122 ~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 122 AETL-SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp TTTT-EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred CCCC-cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCc
Confidence 9876 55555543 4457889999999988888 688999998643210 00 0011000000 00
Q ss_pred ----------------------ceE------------EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 327 ----------------------GLH------------LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 327 ----------------------~l~------------~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
.+. .+..+...+.+++|+|++++|+++ ++.|++||+.+++....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~ 275 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE
T ss_pred eeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcce
Confidence 011 123344567789999999998888 79999999988776544
Q ss_pred CCCCCcceeeeecccCCCCceEEcc
Q 008363 373 HSRNRPMHFLCGSVTEDESAITVNT 397 (568)
Q Consensus 373 ~~~~~~~~~~~~s~~~~~~~i~~~~ 397 (568)
......+ .+..+++++..+.+..
T Consensus 276 ~~~~~~~--~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 276 VPLPHSY--YSVNVSTDGSTVWLGG 298 (337)
T ss_dssp EECSSCC--CEEEECTTSCEEEEES
T ss_pred ecCCCce--eeEEECCCCCEEEEEc
Confidence 3222222 3446788888777653
No 155
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.64 E-value=1.7e-14 Score=167.19 Aligned_cols=235 Identities=11% Similarity=0.099 Sum_probs=170.1
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
..++|+|++ +.|+++. ++.|.+|++... .+..+..+.. . .......|...+ .
T Consensus 248 ~~~~~SpDG----------~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~--~-------------~~~~~~~~~~~v-~ 299 (1045)
T 1k32_A 248 YPRHLNTDG----------RRILFSK-GGSIYIFNPDTE-KIEKIEIGDL--E-------------SPEDRIISIPSK-F 299 (1045)
T ss_dssp CEEEEEESS----------SCEEEEE-TTEEEEECTTTC-CEEECCCCCC--C-------------BCCSEEEECGGG-G
T ss_pred ceeeEcCCC----------CEEEEEe-CCEEEEecCCce-EeeeeccCcc--c-------------cccccccccccc-c
Confidence 367999999 6788774 899999999443 3333311100 0 000002345567 8
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCC-CeeEEEEccCCCCCCCCcEEEEEcCCC-EE-E
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTL-PIRAVSWAPAESDSDSANVILTAGHGG-LK-F 260 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-~V~~v~~~p~~~~~~~~~~las~s~d~-v~-l 260 (568)
+++|+| |+|.+|++++ ++.|.+|++..+ . ...+..|.. .+..++|+ ++ ..|++++.+. |. +
T Consensus 300 ~~~~S~-pdG~~la~~~-~~~i~~~~~~~~------~-~~~~~~~~~~~~~~~~~s-dg------~~l~~~s~~~~l~~~ 363 (1045)
T 1k32_A 300 AEDFSP-LDGDLIAFVS-RGQAFIQDVSGT------Y-VLKVPEPLRIRYVRRGGD-TK------VAFIHGTREGDFLGI 363 (1045)
T ss_dssp EEEEEE-CGGGCEEEEE-TTEEEEECTTSS------B-EEECSCCSCEEEEEECSS-SE------EEEEEEETTEEEEEE
T ss_pred eeeecC-CCCCEEEEEE-cCEEEEEcCCCC------c-eEEccCCCcceEEeeeEc-CC------CeEEEEECCCceEEE
Confidence 999872 3578888888 889999998755 3 334567777 89999999 88 7888888876 88 9
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||+.+. .. ..+.+|...+..++|+|||++|++++.++.|++||+. +|+.. ..+.+|...|.+
T Consensus 364 ~d~~~~-~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~--------tg~~~--------~~~~~~~~~v~~ 425 (1045)
T 1k32_A 364 YDYRTG-KA-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE--------TGKPT--------VIERSREAMITD 425 (1045)
T ss_dssp EETTTC-CE-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT--------TCCEE--------EEEECSSSCCCC
T ss_pred EECCCC-Cc-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECC--------CCceE--------EeccCCCCCccc
Confidence 999865 33 3344788889999999999999999999999999994 35432 355578899999
Q ss_pred EEEecCCCEEEEEeCCC----------eEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEcccCCCC
Q 008363 341 VQVSRLTGMVAYCSADG----------TVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVNTPLDNT 402 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg----------~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~~~~~ 402 (568)
++|+|+|++|++++.++ .|++||+.++..... ..+. .......+++++..|...+.....
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l-~~~~-~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA-TTEN-SHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC-SCSS-SBEEEEEECTTSCEEEEEESCCCC
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe-eCCC-cccCCceEcCCCCEEEEEecccCC
Confidence 99999999999888754 899999998764332 2221 223345789999988876654444
No 156
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=1.9e-14 Score=160.77 Aligned_cols=210 Identities=9% Similarity=0.063 Sum_probs=140.0
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
+.++|+|++ .+|+++ ||.|++||+.++++...+..+.. ..+.... .
T Consensus 20 ~~~~w~~dg----------~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~-~ 65 (740)
T 4a5s_A 20 YSLRWISDH----------EYLYKQ--ENNILVFNAEYGNSSVFLENSTF---------------------DEFGHSI-N 65 (740)
T ss_dssp CCEEECSSS----------EEEEEE--TTEEEEEETTTCCEEEEECTTTT---------------------TTCCSCC-C
T ss_pred cccEECCCC----------cEEEEc--CCcEEEEECCCCceEEEEechhh---------------------hhhcccc-c
Confidence 379999999 788886 89999999999887765532210 1111122 3
Q ss_pred EEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 184 TMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.++|+ |||++|+.++.+ +.+.+||+.++ ++. .+..|...+..++|+|+| +.||.+.
T Consensus 66 ~~~~S--pdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~------~~~-~l~~~~~~~~~~~~SPdG------~~la~~~ 130 (740)
T 4a5s_A 66 DYSIS--PDGQFILLEYNYVKQWRHSYTASYDIYDLNKR------QLI-TEERIPNNTQWVTWSPVG------HKLAYVW 130 (740)
T ss_dssp EEEEC--TTSSEEEEEEEEEECSSSCEEEEEEEEETTTT------EEC-CSSCCCTTEEEEEECSST------TCEEEEE
T ss_pred ceEEC--CCCCEEEEEECCeeeEEEccceEEEEEECCCC------cEE-EcccCCCcceeeEECCCC------CEEEEEE
Confidence 47888 999999999876 56679999876 332 355677889999999999 7888886
Q ss_pred CCCEEEEECCCCCcceeeeCCCCCCe-----------------EEEEEcCCCCEEEEEeCC-CcEEEEEccccccC----
Q 008363 255 HGGLKFWDIRDPFRPLWDIHPAPKFI-----------------YGLDWLPDPGCVILSFDD-GAMRIVSLLKAAYD---- 312 (568)
Q Consensus 255 ~d~v~lwD~~~~~~~~~~~~~h~~~i-----------------~~l~~sp~~~~l~s~~~d-g~I~lwd~~~~~~~---- 312 (568)
+..|++||+.++.....+..++...+ ..+.|||||+.|+.++.| +.|.+|++......
T Consensus 131 ~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~ 210 (740)
T 4a5s_A 131 NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQY 210 (740)
T ss_dssp TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSS
T ss_pred CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCC
Confidence 55599999987632222333333333 348999999999988653 32444444211100
Q ss_pred -------CC----------------CC---CCCccCccccceEEEe------cCCCCEEEEEEecCCCEEEEEeC----C
Q 008363 313 -------VP----------------AT---GKPFAGTKQQGLHLVN------CSSFAIWSVQVSRLTGMVAYCSA----D 356 (568)
Q Consensus 313 -------~~----------------~~---g~~~~~~~~~~l~~~~------~h~~~V~~l~~sp~~~~l~s~s~----D 356 (568)
-| .+ |+.. ....+. +|...+..++|+|+|++++.... +
T Consensus 211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~ 284 (740)
T 4a5s_A 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNA------TSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNY 284 (740)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCC------CEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTE
T ss_pred CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcc------eEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCE
Confidence 00 11 1100 112232 36777999999999987666543 3
Q ss_pred CeEEEEEcCCCe
Q 008363 357 GTVHRFQLTAKA 368 (568)
Q Consensus 357 g~v~iwd~~~~~ 368 (568)
..|++||+.++.
T Consensus 285 ~~i~~~d~~tg~ 296 (740)
T 4a5s_A 285 SVMDICDYDESS 296 (740)
T ss_dssp EEEEEEEEETTT
T ss_pred EEEEEEECCCCc
Confidence 479999998876
No 157
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.61 E-value=1.2e-14 Score=168.48 Aligned_cols=192 Identities=9% Similarity=0.062 Sum_probs=155.2
Q ss_pred eeeEEEEc-cCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC-
Q 008363 102 VAWDVKWK-PYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ- 179 (568)
Q Consensus 102 ~v~~v~~s-p~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~- 179 (568)
.+.+++|+ |++ .+|++++ ++.|.+|++.++.... + ..|..
T Consensus 297 ~v~~~~~S~pdG----------~~la~~~-~~~i~~~~~~~~~~~~-~--------------------------~~~~~~ 338 (1045)
T 1k32_A 297 SKFAEDFSPLDG----------DLIAFVS-RGQAFIQDVSGTYVLK-V--------------------------PEPLRI 338 (1045)
T ss_dssp GGGEEEEEECGG----------GCEEEEE-TTEEEEECTTSSBEEE-C--------------------------SCCSCE
T ss_pred ccceeeecCCCC----------CEEEEEE-cCEEEEEcCCCCceEE-c--------------------------cCCCcc
Confidence 34599999 999 7888887 7899999998765432 2 44555
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEE-EEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVA-LWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
.+ ..++|+ +|+.|++++.++.|. +|++..+ .. ..+.+|...+..++|+|++ ++|++++.++
T Consensus 339 ~~-~~~~~s---dg~~l~~~s~~~~l~~~~d~~~~------~~-~~l~~~~~~~~~~~~SpDG------~~la~~~~~~~ 401 (1045)
T 1k32_A 339 RY-VRRGGD---TKVAFIHGTREGDFLGIYDYRTG------KA-EKFEENLGNVFAMGVDRNG------KFAVVANDRFE 401 (1045)
T ss_dssp EE-EEECSS---SEEEEEEEETTEEEEEEEETTTC------CE-EECCCCCCSEEEEEECTTS------SEEEEEETTSE
T ss_pred eE-EeeeEc---CCCeEEEEECCCceEEEEECCCC------Cc-eEecCCccceeeeEECCCC------CEEEEECCCCe
Confidence 66 888887 788999999888888 8898755 33 3344788899999999999 8999999998
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC----------cEEEEEccccccCCCCCCCCccCccccc
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG----------AMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg----------~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
|++||+.++ .....+.+|...+.+++|+|||++|++++.++ .|++||+.. ++
T Consensus 402 v~~~d~~tg-~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~--------g~--------- 463 (1045)
T 1k32_A 402 IMTVDLETG-KPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--------RK--------- 463 (1045)
T ss_dssp EEEEETTTC-CEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--------TE---------
T ss_pred EEEEECCCC-ceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC--------Cc---------
Confidence 999999977 55555557888899999999999999887644 899999943 32
Q ss_pred eEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 328 LHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+..+..|...+..++|+|+|++|++++.++...+|+...
T Consensus 464 ~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 464 IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 346777888899999999999999999988888887643
No 158
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.59 E-value=5e-14 Score=152.72 Aligned_cols=220 Identities=9% Similarity=-0.102 Sum_probs=146.2
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEEeC---CCcEEEEECCC--CceeeEEeccCCccCCCCceEEEeecce
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLG---NGSLEVWEVPL--LRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~---dg~V~iwd~~~--~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
...|....++.++|+|+. ++++++. +...+||.+.. ......+
T Consensus 59 lt~~~~~~~~~~~~spd~-----------~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------------------- 106 (582)
T 3o4h_A 59 LNREPINSVLDPHYGVGR-----------VILVRDVSKGAEQHALFKVNTSRPGEEQRL--------------------- 106 (582)
T ss_dssp CCSSCCSEECEECTTCSE-----------EEEEEECSTTSCCEEEEEEETTSTTCCEEC---------------------
T ss_pred eecccccccccccCCCCe-----------EEEEeccCCCCcceEEEEEeccCCCccccc---------------------
Confidence 345553366699999883 7777765 55566665533 1111121
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
..+ ..+ ...+|+|.+++..+++++.|+ +.|||+.++ .+......+ . .+++|+|+| ++
T Consensus 107 -----~~~-~~~-~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g------~~~~l~~~~-~--~~~~~spDG------~~ 163 (582)
T 3o4h_A 107 -----EAV-KPM-RILSGVDTGEAVVFTGATEDR-VALYALDGG------GLRELARLP-G--FGFVSDIRG------DL 163 (582)
T ss_dssp -----TTS-CSB-EEEEEEECSSCEEEEEECSSC-EEEEEEETT------EEEEEEEES-S--CEEEEEEET------TE
T ss_pred -----cCC-CCc-eeeeeCCCCCeEEEEecCCCC-ceEEEccCC------cEEEeecCC-C--ceEEECCCC------CE
Confidence 111 112 445777444443455555554 559999876 444433333 2 889999999 89
Q ss_pred EEEEcCC----C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEccccccCCCCCCCCccC
Q 008363 250 ILTAGHG----G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG--AMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 250 las~s~d----~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg--~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
||+++.+ . |++||+.++ . ...+..|.+.+..++|+|||+.|+++..++ .|++||+.. |+.
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g-~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~--------~~~--- 230 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSG-G-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD--------GSV--- 230 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTC-C-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT--------CCE---
T ss_pred EEEEEEcCCCCeEEEEEcCCCC-C-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC--------CcE---
Confidence 9977765 6 999999876 3 335678888899999999999999888888 899999843 322
Q ss_pred ccccceEEEecCCCCEEEEE--------EecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceE
Q 008363 323 TKQQGLHLVNCSSFAIWSVQ--------VSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAIT 394 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~--------~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~ 394 (568)
..+.+|...+..++ |+|+|.++++++.||.+++|++ ++..... ...+...+++ ++..+.
T Consensus 231 ------~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~----~~~v~~~~~s-dg~~l~ 297 (582)
T 3o4h_A 231 ------EDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP----QGNHGRVVLW-RGKLVT 297 (582)
T ss_dssp ------EECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC----SSEEEEEEEE-TTEEEE
T ss_pred ------EEccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC----CCceEEEEec-CCEEEE
Confidence 25556666666666 9999999999999999999999 5544321 1233444566 655544
Q ss_pred E
Q 008363 395 V 395 (568)
Q Consensus 395 ~ 395 (568)
.
T Consensus 298 ~ 298 (582)
T 3o4h_A 298 S 298 (582)
T ss_dssp E
T ss_pred E
Confidence 3
No 159
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.58 E-value=3.3e-13 Score=137.33 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=138.0
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC-CCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP-LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
+..++|+|++ ++|++++.+ .|.+|++. +++....... ..+ +..
T Consensus 42 ~~~~a~spdg----------~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------~~~-g~~ 85 (365)
T 1jof_A 42 ISWMTFDHER----------KNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------PIG-GHP 85 (365)
T ss_dssp CSEEEECTTS----------SEEEEEEBT-EEEEEEEEETTEEEEEEEE------------------------ECC-SSG
T ss_pred CcEEEECCCC----------CEEEEEccc-eEEEEEECCCCCEEEeeEe------------------------ecC-CCC
Confidence 3489999999 788888887 99999997 6654432100 111 122
Q ss_pred ceEEEEccCCCCCE--EEEEe-------------CCCeEEEEEccCCCCCCCCceeEEee----CCCCCeeEEEEccCCC
Q 008363 182 PLTMEWSTSPPHDY--LLAGC-------------HDGTVALWKFVASDSSIDSRPLLCFS----ADTLPIRAVSWAPAES 242 (568)
Q Consensus 182 ~~~v~~s~~~~g~~--l~sgs-------------~Dg~I~iwd~~~~~~~~~~~~~~~~~----~h~~~V~~v~~~p~~~ 242 (568)
..++|+ |+|++ ++++. .+|++.+|++... ......+. .+...+.+++|+|++
T Consensus 86 -~~~~~s--pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~spdG- 156 (365)
T 1jof_A 86 -RANDAD--TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-----GKLEKNVQNYEYQENTGIHGMVFDPTE- 156 (365)
T ss_dssp -GGGCTT--SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-----CCEEEEEEEEECCTTCCEEEEEECTTS-
T ss_pred -ccEEEC--CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-----CcCcceEeeEEeCCCCcceEEEECCCC-
Confidence 567877 88884 44553 6899999999742 12222222 256679999999999
Q ss_pred CCCCCcEEEEEcC-CC-EEEEECC-CCCc-ceeeeC--CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCC
Q 008363 243 DSDSANVILTAGH-GG-LKFWDIR-DPFR-PLWDIH--PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 243 ~~~~~~~las~s~-d~-v~lwD~~-~~~~-~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~ 315 (568)
++|+++.. +. |++||+. ++.. .+..+. .|...+..++|+|+|++|++++. ++.|.+|++.. .
T Consensus 157 -----~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~------~ 225 (365)
T 1jof_A 157 -----TYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP------A 225 (365)
T ss_dssp -----SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT------T
T ss_pred -----CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC------C
Confidence 77776654 45 9999998 5532 223332 24566899999999999988875 78999998743 1
Q ss_pred CCCCccCccccceEEEe----cCCC------CEEEEE-EecCCCEEEEEeCCC------eEEEEEcC-CCeee
Q 008363 316 TGKPFAGTKQQGLHLVN----CSSF------AIWSVQ-VSRLTGMVAYCSADG------TVHRFQLT-AKAVE 370 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~----~h~~------~V~~l~-~sp~~~~l~s~s~Dg------~v~iwd~~-~~~~~ 370 (568)
+|+... ..+.+..+. +|.. .+..++ |+|+|++|++++.+. .|.+|++. ++.+.
T Consensus 226 ~g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 226 THMPVY--THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp TCCEEE--EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred CCcEEE--ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 243210 000011111 2232 588999 999999887766432 89999996 45443
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.54 E-value=4.2e-13 Score=137.19 Aligned_cols=195 Identities=9% Similarity=-0.033 Sum_probs=137.6
Q ss_pred EEEccCCCCcccccCcccEEEEEeC-CCc--EEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 106 VKWKPYNAVDCKCKQRLGYLAVLLG-NGS--LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 106 v~~sp~~~~~~~~~~~~~~las~s~-dg~--V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.+|+|++ +.|+.++. +|. |.+||+.+++..... .++...+
T Consensus 41 ~~~SpDg----------~~l~~~~~~~g~~~l~~~d~~~g~~~~lt--------------------------~~~~~~~- 83 (388)
T 3pe7_A 41 KCFTRDG----------SKLLFGGAFDGPWNYYLLDLNTQVATQLT--------------------------EGRGDNT- 83 (388)
T ss_dssp CCBCTTS----------CEEEEEECTTSSCEEEEEETTTCEEEECC--------------------------CSSCBCS-
T ss_pred ccCCCCC----------CEEEEEEcCCCCceEEEEeCCCCceEEee--------------------------eCCCCCc-
Confidence 7899999 78888887 674 888899887655432 3444444
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEE--EccCCCCCCCCcEEEEE-------
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVS--WAPAESDSDSANVILTA------- 253 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~--~~p~~~~~~~~~~las~------- 253 (568)
..+.|+ |+|+.|+.++.++.|.+||+.++ +....+..+...+.... +++++ .+++..
T Consensus 84 ~~~~~s--pdg~~l~~~~~~~~l~~~d~~~g------~~~~~~~~~~~~~~~~~~~~~~dg------~~l~~~~~~~~~~ 149 (388)
T 3pe7_A 84 FGGFLS--PDDDALFYVKDGRNLMRVDLATL------EENVVYQVPAEWVGYGTWVANSDC------TKLVGIEIRREDW 149 (388)
T ss_dssp SSCEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEECCTTEEEEEEEEECTTS------SEEEEEEEEGGGC
T ss_pred cceEEc--CCCCEEEEEeCCCeEEEEECCCC------cceeeeechhhcccccceeECCCC------CeeccccccCccc
Confidence 567899 89999999999999999999877 45555555666554444 47887 677642
Q ss_pred ---------------cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEccccc
Q 008363 254 ---------------GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD------GAMRIVSLLKAA 310 (568)
Q Consensus 254 ---------------s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d------g~I~lwd~~~~~ 310 (568)
..+. |.+||+.++ . ...+..+...+..++|+| ||+.|+....+ ..|.++|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~-- 225 (388)
T 3pe7_A 150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTG-E-STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG-- 225 (388)
T ss_dssp CCCCSHHHHHHHGGGCCCEEEEEEETTTC-C-EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--
T ss_pred ccccccchhhhhhccCCcceEEEEECCCC-c-eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--
Confidence 2335 999999976 3 233334566789999999 99999887653 3677777632
Q ss_pred cCCCCCCCCccCccccceEEEecCC--CCEEEEEEecCCCEEEEEeCC-C----eEEEEEcCCCeee
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSS--FAIWSVQVSRLTGMVAYCSAD-G----TVHRFQLTAKAVE 370 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~--~~V~~l~~sp~~~~l~s~s~D-g----~v~iwd~~~~~~~ 370 (568)
+.. ..+..+. ..+..++|+|+|+.|+..+.+ + .|++||+.++...
T Consensus 226 ------~~~---------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~ 277 (388)
T 3pe7_A 226 ------TNM---------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENR 277 (388)
T ss_dssp ------CCC---------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred ------Cce---------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence 221 2333343 357789999999877665532 2 3999999887643
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=156.51 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=134.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeC---------CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG---------NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSML 173 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~---------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (568)
+.+++|||+| ++||+++. ++.|++||+.+++.+...
T Consensus 62 ~~~~~~SpDg----------~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~------------------------- 106 (719)
T 1z68_A 62 ASNYGLSPDR----------QFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN------------------------- 106 (719)
T ss_dssp CSEEEECTTS----------SEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS-------------------------
T ss_pred eeeEEECCCC----------CeEEEEecCceeEEeecceEEEEEECCCCccccce-------------------------
Confidence 4599999999 78988876 789999999987653110
Q ss_pred ccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE---------eeCCCCC---------eeEE
Q 008363 174 KCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC---------FSADTLP---------IRAV 235 (568)
Q Consensus 174 ~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~---------~~~h~~~---------V~~v 235 (568)
. ....+ ..++|+ |+|+.||.+. |+.|++|++.++. .... +.+|... ..++
T Consensus 107 -~-l~~~~-~~~~~S--PDG~~la~~~-~~~i~~~~~~~g~------~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 107 -E-LPRPI-QYLCWS--PVGSKLAYVY-QNNIYLKQRPGDP------PFQITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp -C-CCSSB-CCEEEC--SSTTCEEEEE-TTEEEEESSTTSC------CEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred -e-cCccc-ccceEC--CCCCEEEEEE-CCeEEEEeCCCCC------cEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence 0 01235 789999 8999999986 7899999998662 2221 1222222 2589
Q ss_pred EEccCCCCCCCCcEEEEEcCC-----------------------------------CEEEEECCCCCcce--------ee
Q 008363 236 SWAPAESDSDSANVILTAGHG-----------------------------------GLKFWDIRDPFRPL--------WD 272 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d-----------------------------------~v~lwD~~~~~~~~--------~~ 272 (568)
+|+|+| ++||+++.| .|++||+.++ ... ..
T Consensus 175 ~wSPDG------~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~-~~~~~~~~~~~~~ 247 (719)
T 1z68_A 175 WWSPNG------KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYP-AYVGPQEVPVPAM 247 (719)
T ss_dssp EECTTS------SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCH-HHHCCEECCCCHH
T ss_pred EECCCC------CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCC-CccceeEccCCcc
Confidence 999999 888887643 3779999876 321 12
Q ss_pred eCCCCCCeEEEEEcCCCCEEEEEeCC----CcEEEEE----ccccccCCCCCCCCccCccccceE-EEecCCCCEE----
Q 008363 273 IHPAPKFIYGLDWLPDPGCVILSFDD----GAMRIVS----LLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIW---- 339 (568)
Q Consensus 273 ~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~lwd----~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~---- 339 (568)
+.+|...+..++|+||++++++.... ..|.+|| +. +|+.. ..+. ...+|...|.
T Consensus 248 ~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~--------~g~~~-----~~~~~~~~~~~~~~~~~~~ 314 (719)
T 1z68_A 248 IASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ--------TWDCP-----KTQEHIEESRTGWAGGFFV 314 (719)
T ss_dssp HHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS--------SEECC-----GGGEEEEECSSSCSSSSSC
T ss_pred CCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC--------CCceE-----EEEecccccCCceEccccC
Confidence 33678889999999998877664432 2488888 52 34332 1111 1135666665
Q ss_pred -EEEEecCCCEEEE--EeCCC--eEEEEEcCCCe
Q 008363 340 -SVQVSRLTGMVAY--CSADG--TVHRFQLTAKA 368 (568)
Q Consensus 340 -~l~~sp~~~~l~s--~s~Dg--~v~iwd~~~~~ 368 (568)
.+.|+|+|+.|+. ...+| .|++|++.++.
T Consensus 315 ~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 315 STPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp CCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred CccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 7899999985554 44555 56777776654
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.52 E-value=7.4e-13 Score=134.74 Aligned_cols=206 Identities=13% Similarity=0.003 Sum_probs=137.3
Q ss_pred eEEEEccCCCCcccccCcccE--EEEEe-------------CCCcEEEEECCC-CceeeEEeccCCccCCCCceEEEeec
Q 008363 104 WDVKWKPYNAVDCKCKQRLGY--LAVLL-------------GNGSLEVWEVPL-LRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~--las~s-------------~dg~V~iwd~~~-~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..++|+|++ ++ ++++. .+|.+.+|++.. ++....+.. .+
T Consensus 86 ~~~~~spdg----------~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~--------------~~- 140 (365)
T 1jof_A 86 RANDADTNT----------RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN--------------YE- 140 (365)
T ss_dssp GGGCTTSCC----------EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--------------EE-
T ss_pred ccEEECCCC----------CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--------------EE-
Confidence 378999999 63 44553 689999999974 554433210 00
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeC-CCeEEEEEcc-CCCCCCCCceeEEee--CCCCCeeEEEEccCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-DGTVALWKFV-ASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESD 243 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~-~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~ 243 (568)
..+...+ .+++|+ |+|++|+++.. ++.|.+|++. ++.. ..+..+. .|...+..++|+|++
T Consensus 141 -------~~~~~~~-~~~~~s--pdG~~l~~~~~~~~~v~~~~~~~~g~~----~~~~~~~~~~~g~~p~~~~~spdg-- 204 (365)
T 1jof_A 141 -------YQENTGI-HGMVFD--PTETYLYSADLTANKLWTHRKLASGEV----ELVGSVDAPDPGDHPRWVAMHPTG-- 204 (365)
T ss_dssp -------CCTTCCE-EEEEEC--TTSSEEEEEETTTTEEEEEEECTTSCE----EEEEEEECSSTTCCEEEEEECTTS--
T ss_pred -------eCCCCcc-eEEEEC--CCCCEEEEEcCCCCEEEEEEECCCCCE----EEeeeEecCCCCCCCCEeEECCCC--
Confidence 1233444 899999 89998887764 6899999998 4521 2333443 346679999999999
Q ss_pred CCCCcEEEEEcC-CC-EEEEECC--CCCcc-----eeeeC----CCCC------CeEEEE-EcCCCCEEEEEeCC-C---
Q 008363 244 SDSANVILTAGH-GG-LKFWDIR--DPFRP-----LWDIH----PAPK------FIYGLD-WLPDPGCVILSFDD-G--- 299 (568)
Q Consensus 244 ~~~~~~las~s~-d~-v~lwD~~--~~~~~-----~~~~~----~h~~------~i~~l~-~sp~~~~l~s~~~d-g--- 299 (568)
+++++++. ++ |.+|++. ++... +..+. +|.. .+..++ |+|||++|+++..+ +
T Consensus 205 ----~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~ 280 (365)
T 1jof_A 205 ----NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL 280 (365)
T ss_dssp ----SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred ----CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCC
Confidence 77777665 56 9999875 33211 11221 1222 478999 99999999877542 2
Q ss_pred --cEEEEEccccccCCCCCCCCccCccccceE-EEecCCCCEEEEEEec---CCCEEEEEeCC-CeEEEEEcCCC
Q 008363 300 --AMRIVSLLKAAYDVPATGKPFAGTKQQGLH-LVNCSSFAIWSVQVSR---LTGMVAYCSAD-GTVHRFQLTAK 367 (568)
Q Consensus 300 --~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~-~~~~h~~~V~~l~~sp---~~~~l~s~s~D-g~v~iwd~~~~ 367 (568)
.|.+|++.. +|+.. .+. ....+...+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 281 ~~~i~v~~~~~-------~g~~~------~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 281 QGYIAGFKLRD-------CGSIE------KQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEEEEEECT-------TSCEE------EEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCeEEEEEECC-------CCCEE------EeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 899999942 24321 111 2333445567889999 89999999875 89999998654
No 163
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.48 E-value=2.2e-11 Score=118.94 Aligned_cols=200 Identities=9% Similarity=0.026 Sum_probs=141.0
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
..+++++|++ .++++...++.|.+||.. +..+..+.... ...+|...+
T Consensus 32 p~~v~~~~~g----------~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--------------------~~~~~~~~p- 79 (286)
T 1q7f_A 32 PSGVAVNAQN----------DIIVADTNNHRIQIFDKE-GRFKFQFGECG--------------------KRDSQLLYP- 79 (286)
T ss_dssp EEEEEECTTC----------CEEEEEGGGTEEEEECTT-SCEEEEECCBS--------------------SSTTCBSSE-
T ss_pred CceEEECCCC----------CEEEEECCCCEEEEECCC-CcEEEEecccC--------------------CCcccccCc-
Confidence 4489999998 788888889999999987 45554431100 002334444
Q ss_pred eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
..+++.. +++.++++... ++.|.+||.. + ..+..+. .+...+.+|++++++ +++++...++ |.
T Consensus 80 ~~i~~~~-~~g~l~v~~~~~~~~i~~~d~~-g------~~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~ 145 (286)
T 1q7f_A 80 NRVAVVR-NSGDIIVTERSPTHQIQIYNQY-G------QFVRKFGATILQHPRGVTVDNKG------RIIVVECKVMRVI 145 (286)
T ss_dssp EEEEEET-TTTEEEEEECGGGCEEEEECTT-S------CEEEEECTTTCSCEEEEEECTTS------CEEEEETTTTEEE
T ss_pred eEEEEEc-CCCeEEEEcCCCCCEEEEECCC-C------cEEEEecCccCCCceEEEEeCCC------CEEEEECCCCEEE
Confidence 8888831 45655555543 8999999943 3 4455553 344678999999998 7888887777 99
Q ss_pred EEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC--C
Q 008363 260 FWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS--S 335 (568)
Q Consensus 260 lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h--~ 335 (568)
+||... ..+..+. .+...+..|+++|+|+.+++...++.|++||.. |+. +..+..+ .
T Consensus 146 ~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~---------g~~--------~~~~~~~g~~ 206 (286)
T 1q7f_A 146 IFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE---------GQY--------LRQIGGEGIT 206 (286)
T ss_dssp EECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT---------CCE--------EEEESCTTTS
T ss_pred EEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC---------CCE--------EEEEccCCcc
Confidence 999753 3343332 344568999999999977777779999999972 332 2344333 3
Q ss_pred CCEEEEEEecCCCEEEEEeCCC-eEEEEEcCCC
Q 008363 336 FAIWSVQVSRLTGMVAYCSADG-TVHRFQLTAK 367 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg-~v~iwd~~~~ 367 (568)
..+..++++++|.++++...++ .|.+|+....
T Consensus 207 ~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~ 239 (286)
T 1q7f_A 207 NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 239 (286)
T ss_dssp CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC
Confidence 5789999999999888888886 9999997543
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.47 E-value=2.1e-11 Score=119.07 Aligned_cols=191 Identities=9% Similarity=0.088 Sum_probs=136.8
Q ss_pred eeEEEEc-cCCCCcccccCcccEEEEEeC-CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 103 AWDVKWK-PYNAVDCKCKQRLGYLAVLLG-NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 103 v~~v~~s-p~~~~~~~~~~~~~~las~s~-dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
+..+++. +++ .++++... ++.|.+|+ .+++.+..+. ..+...
T Consensus 79 p~~i~~~~~~g----------~l~v~~~~~~~~i~~~d-~~g~~~~~~~-------------------------~~~~~~ 122 (286)
T 1q7f_A 79 PNRVAVVRNSG----------DIIVTERSPTHQIQIYN-QYGQFVRKFG-------------------------ATILQH 122 (286)
T ss_dssp EEEEEEETTTT----------EEEEEECGGGCEEEEEC-TTSCEEEEEC-------------------------TTTCSC
T ss_pred ceEEEEEcCCC----------eEEEEcCCCCCEEEEEC-CCCcEEEEec-------------------------CccCCC
Confidence 4589994 666 55555533 89999999 5556554431 122233
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
+ .++++. ++|+++++...++.|.+||... ..+..+. .+...+..|++++++ +++++...++
T Consensus 123 ~-~~i~~~--~~g~l~v~~~~~~~i~~~~~~g-------~~~~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~ 186 (286)
T 1q7f_A 123 P-RGVTVD--NKGRIIVVECKVMRVIIFDQNG-------NVLHKFGCSKHLEFPNGVVVNDKQ------EIFISDNRAHC 186 (286)
T ss_dssp E-EEEEEC--TTSCEEEEETTTTEEEEECTTS-------CEEEEEECTTTCSSEEEEEECSSS------EEEEEEGGGTE
T ss_pred c-eEEEEe--CCCCEEEEECCCCEEEEEcCCC-------CEEEEeCCCCccCCcEEEEECCCC------CEEEEECCCCE
Confidence 3 889988 7888888888889999999652 3444443 445678999999998 7888877777
Q ss_pred EEEEECCCCCcceeeeCCC--CCCeEEEEEcCCCCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 258 LKFWDIRDPFRPLWDIHPA--PKFIYGLDWLPDPGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
|++||... ..+..+..+ ...+..|+++|+|+++++...++ .|.+||. .|+. +..+..+
T Consensus 187 i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~---------~g~~--------~~~~~~~ 247 (286)
T 1q7f_A 187 VKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ---------DGQL--------ISALESK 247 (286)
T ss_dssp EEEEETTC--CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT---------TSCE--------EEEEEES
T ss_pred EEEEcCCC--CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC---------CCCE--------EEEEccc
Confidence 99999854 344445332 35789999999998888877775 9999996 2433 2445444
Q ss_pred C--CCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 335 S--FAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 335 ~--~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
. ..+.+++++|+|.++++ +.|+.|++|++.
T Consensus 248 ~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~ 279 (286)
T 1q7f_A 248 VKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV 279 (286)
T ss_dssp SCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred CCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence 3 34789999999987777 679999999984
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.47 E-value=3.2e-12 Score=130.63 Aligned_cols=232 Identities=8% Similarity=0.018 Sum_probs=146.0
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+..+.|+|++ +.|+.++.++.|++||+.+++....+ ..+...+
T Consensus 82 ~~~~~~~spdg----------~~l~~~~~~~~l~~~d~~~g~~~~~~--------------------------~~~~~~~ 125 (388)
T 3pe7_A 82 NTFGGFLSPDD----------DALFYVKDGRNLMRVDLATLEENVVY--------------------------QVPAEWV 125 (388)
T ss_dssp CSSSCEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEE--------------------------ECCTTEE
T ss_pred CccceEEcCCC----------CEEEEEeCCCeEEEEECCCCcceeee--------------------------echhhcc
Confidence 33367899999 79999999999999999997765443 1222222
Q ss_pred ceEEEEccCCCCCEEEEE----------------------eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 182 PLTMEWSTSPPHDYLLAG----------------------CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sg----------------------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
....|...+++.+++.. ..+..|.+||+.++ .. ..+..+...+..++|+|
T Consensus 126 -~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g------~~-~~l~~~~~~~~~~~~sp 197 (388)
T 3pe7_A 126 -GYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG------ES-TVILQENQWLGHPIYRP 197 (388)
T ss_dssp -EEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC------CE-EEEEEESSCEEEEEEET
T ss_pred -cccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC------ce-EEeecCCccccccEECC
Confidence 33444334888887743 24578999999866 33 33335567799999999
Q ss_pred -CCCCCCCCcEEEEEcC------CC-EEEEECCCCCcceeeeCCCC--CCeEEEEEcCCCCEEEEEeC-CC----cEEEE
Q 008363 240 -AESDSDSANVILTAGH------GG-LKFWDIRDPFRPLWDIHPAP--KFIYGLDWLPDPGCVILSFD-DG----AMRIV 304 (568)
Q Consensus 240 -~~~~~~~~~~las~s~------d~-v~lwD~~~~~~~~~~~~~h~--~~i~~l~~sp~~~~l~s~~~-dg----~I~lw 304 (568)
++ ..|+.+.. .. |.++|+... ....+..+. ..+..++|+|||+.|+..+. ++ .|++|
T Consensus 198 ~dg------~~l~~~~~~~~~~~~~~l~~~d~~~~--~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 269 (388)
T 3pe7_A 198 YDD------STVAFCHEGPHDLVDARMWLINEDGT--NMRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA 269 (388)
T ss_dssp TEE------EEEEEEECSCTTTSSCSEEEEETTSC--CCEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred CCC------CEEEEEEecCCCCCcceEEEEeCCCC--ceEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence 88 77776654 23 888887654 233343343 25788999999998866543 22 39999
Q ss_pred EccccccCCCCCCCCccCccccceEEEecCCCC---EEEEEEecCCCEEEEE---------eCCCeEEEEEcCCCeeecc
Q 008363 305 SLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA---IWSVQVSRLTGMVAYC---------SADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 305 d~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~---V~~l~~sp~~~~l~s~---------s~Dg~v~iwd~~~~~~~~~ 372 (568)
|+.. |+. ..+..+.++... ...+.|+|+|+.|+.. ..+..|++||+.++....-
T Consensus 270 d~~~--------g~~------~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l 335 (388)
T 3pe7_A 270 DPET--------LEN------RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRV 335 (388)
T ss_dssp CTTT--------CCE------EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEE
T ss_pred ecCC--------Cce------EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEe
Confidence 9943 432 222333331111 1123799999877754 4567899999998765432
Q ss_pred CCCCC---------cceeeeecccCCCCceEEcccC
Q 008363 373 HSRNR---------PMHFLCGSVTEDESAITVNTPL 399 (568)
Q Consensus 373 ~~~~~---------~~~~~~~s~~~~~~~i~~~~~~ 399 (568)
..... .....+.++++++..|.+.+..
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 336 ARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp EECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred ccccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 11111 0013344788999888776543
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.47 E-value=1.2e-11 Score=123.85 Aligned_cols=222 Identities=10% Similarity=0.026 Sum_probs=149.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCC------------------------CcEEEEECCCCceeeEEeccCCccCC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------------------------GSLEVWEVPLLRTMKAIYLSSMKEGT 157 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d------------------------g~V~iwd~~~~~~~~~l~~~~~~~~~ 157 (568)
.+.+|+++|++ +++++...+ +.|.+||..+++.+..+.
T Consensus 25 ~v~~va~d~~G----------~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-------- 86 (329)
T 3fvz_A 25 QVSGVALDSKN----------NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-------- 86 (329)
T ss_dssp CEEEEEECTTC----------CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC--------
T ss_pred CceEEEECCCC----------CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC--------
Confidence 45599999999 788888877 468888887776654330
Q ss_pred CCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe---------eCC
Q 008363 158 DPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF---------SAD 228 (568)
Q Consensus 158 ~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~---------~~h 228 (568)
.++... |..|+++ ++|+++++...++.|++||.... ...+..+ .++
T Consensus 87 -----------------~~~~~~-p~gia~d--~~g~l~v~d~~~~~v~~~~~~g~-----~~~~~~~~~~~~~g~~~~~ 141 (329)
T 3fvz_A 87 -----------------KNLFYL-PHGLSID--TDGNYWVTDVALHQVFKLDPHSK-----EGPLLILGRSMQPGSDQNH 141 (329)
T ss_dssp -----------------TTTCSS-EEEEEEC--TTSCEEEEETTTTEEEEECTTCS-----SCCSEEESBTTBCCCSTTC
T ss_pred -----------------CCccCC-ceEEEEC--CCCCEEEEECCCCEEEEEeCCCC-----eEEEEEecccCCCCCCccc
Confidence 123333 3889988 88998899888999999997643 1144444 244
Q ss_pred CCCeeEEEEcc-CCCCCCCCcEEEEEc-CCC-EEEEECCCCCcceeeeCC----------CCCCeEEEEEcCC-CCEEEE
Q 008363 229 TLPIRAVSWAP-AESDSDSANVILTAG-HGG-LKFWDIRDPFRPLWDIHP----------APKFIYGLDWLPD-PGCVIL 294 (568)
Q Consensus 229 ~~~V~~v~~~p-~~~~~~~~~~las~s-~d~-v~lwD~~~~~~~~~~~~~----------h~~~i~~l~~sp~-~~~l~s 294 (568)
......|+|+| ++ .++++.+ .++ |++||.. + ..+..+.. +-.....|+++|+ +..+++
T Consensus 142 ~~~P~~ia~~~~~g------~lyv~d~~~~~~I~~~~~~-g-~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~ 213 (329)
T 3fvz_A 142 FCQPTDVAVEPSTG------AVFVSDGYCNSRIVQFSPS-G-KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVA 213 (329)
T ss_dssp CSSEEEEEECTTTC------CEEEEECSSCCEEEEECTT-S-CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEE
T ss_pred cCCCcEEEEeCCCC------eEEEEeCCCCCeEEEEcCC-C-CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEE
Confidence 55789999999 67 7888886 566 9999954 3 44444421 2234789999999 666666
Q ss_pred EeCCCcEEEEEccccccCCCCCCCCccCccccceEEE--ecCCCCEEEEEEecCCCEEEEE-------eCCCeEEEEEcC
Q 008363 295 SFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV--NCSSFAIWSVQVSRLTGMVAYC-------SADGTVHRFQLT 365 (568)
Q Consensus 295 ~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~--~~h~~~V~~l~~sp~~~~l~s~-------s~Dg~v~iwd~~ 365 (568)
...++.|++||.. +|+.+ ..+ ..+...+..++|+| +..+++. ..+..|++|++.
T Consensus 214 d~~~~~I~~~~~~--------~G~~~--------~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~ 276 (329)
T 3fvz_A 214 DRENGRIQCFKTD--------TKEFV--------REIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS 276 (329)
T ss_dssp ETTTTEEEEEETT--------TCCEE--------EEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT
T ss_pred ECCCCEEEEEECC--------CCcEE--------EEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC
Confidence 6778999999984 35443 344 34566788999999 4333333 344589999998
Q ss_pred CCeeeccCC--CCCcceeeeecccCCCC
Q 008363 366 AKAVEKDHS--RNRPMHFLCGSVTEDES 391 (568)
Q Consensus 366 ~~~~~~~~~--~~~~~~~~~~s~~~~~~ 391 (568)
++.+..... ..........++++++.
T Consensus 277 ~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 277 SGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 887665432 11111222335667773
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.46 E-value=4.5e-12 Score=139.48 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=141.9
Q ss_pred eeccCCceeeEEEEccCCCCcccccCcccEEEEE--eCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc
Q 008363 95 CLAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVL--LGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM 172 (568)
Q Consensus 95 ~~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~--s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~ 172 (568)
..+|.. .+..++|+++. -++++. +.++...||....+.....+
T Consensus 19 ~~~~~~-~~~~~~~s~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~l------------------------ 63 (662)
T 3azo_A 19 VASRSG-RPACVGAVGDE----------VWWVAPRPAEAGRATLVRRRADGAEESA------------------------ 63 (662)
T ss_dssp HHHTCS-CCEEEEEETTE----------EEEEEEETTTTTEEEEEEECTTSCEEES------------------------
T ss_pred HhhcCC-ccceeEEcCCe----------EEEEecCcccCCcEEEEEECCCCCccee------------------------
Confidence 346777 55699999876 566666 55889999996443334333
Q ss_pred cccCCcCcc--------ceEEEEccCCCCCE-EEEEeC-CCeEEEEEcc--C-CCCCCCCceeEEeeC-----CCCCeeE
Q 008363 173 LKCGGTQSI--------PLTMEWSTSPPHDY-LLAGCH-DGTVALWKFV--A-SDSSIDSRPLLCFSA-----DTLPIRA 234 (568)
Q Consensus 173 ~~~~h~~~V--------~~~v~~s~~~~g~~-l~sgs~-Dg~I~iwd~~--~-~~~~~~~~~~~~~~~-----h~~~V~~ 234 (568)
..|...+ +..+.|+.+|||+. |+.++. +..|.+|++. . + . ...+.. |...+.+
T Consensus 64 --~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~------~-~~~l~~~~~~~~~~~~~~ 134 (662)
T 3azo_A 64 --LPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA------V-PRPLTPVSAVGGGLRWAD 134 (662)
T ss_dssp --SCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC------C-CEECSCCCCSTTCEEEEE
T ss_pred --CCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC------C-CEeccCCccCCCCccccC
Confidence 2222222 02456654478888 776654 4566666654 2 3 2 233333 6677899
Q ss_pred EEEccCCCCCCCCcEEEEEcCC----------C-EEEEECCCCC----cceeeeC-CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 235 VSWAPAESDSDSANVILTAGHG----------G-LKFWDIRDPF----RPLWDIH-PAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 235 v~~~p~~~~~~~~~~las~s~d----------~-v~lwD~~~~~----~~~~~~~-~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
++|+|+| +.|++++.+ . |++||+.+.. .....+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg------~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 135 PVLLPER------GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp EEEETTT------TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred cEECCCC------CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 9999999 788887765 5 9999998721 1233444 555678889999999999988754
Q ss_pred --------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCCe
Q 008363 299 --------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAKA 368 (568)
Q Consensus 299 --------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~~ 368 (568)
..|++||+.. +|... .......+|...+..+.|+|+|+++++++.|+ .|++|++.++.
T Consensus 209 ~~~~~~~~~~i~~~d~~~-------~g~~~-----~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~ 276 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTE-------DGRFA-----DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGA 276 (662)
T ss_dssp TTCCTTTCEEEEEEEECT-------TSCEE-----EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCC
T ss_pred CCCCCCCCcEEEEEEECC-------CCccc-----ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCc
Confidence 3799999941 23110 11123345678899999999999888888888 66777765665
Q ss_pred eec
Q 008363 369 VEK 371 (568)
Q Consensus 369 ~~~ 371 (568)
...
T Consensus 277 ~~~ 279 (662)
T 3azo_A 277 ATQ 279 (662)
T ss_dssp EEE
T ss_pred eee
Confidence 443
No 168
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.46 E-value=1.7e-11 Score=136.08 Aligned_cols=228 Identities=10% Similarity=0.040 Sum_probs=151.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCC-----cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG-----SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg-----~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+..++|||+| ++||.++.++ .|++||+.+++..... ..
T Consensus 126 ~~~~~~~SPDg----------~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~--------------------------~~ 169 (710)
T 2xdw_A 126 ALRGYAFSEDG----------EYFAYGLSASGSDWVTIKFMKVDGAKELPDV--------------------------LE 169 (710)
T ss_dssp EEEEEEECTTS----------SEEEEEEEETTCSCEEEEEEETTTTEEEEEE--------------------------EE
T ss_pred EEEEEEECCCC----------CEEEEEEcCCCCceEEEEEEECCCCCCCccc--------------------------cc
Confidence 45689999999 7888776544 8999999998766432 11
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCe----------------EEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGT----------------VALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWA 238 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~----------------I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~ 238 (568)
+. .+ ..++|+ |||+.|+.++.++. |++|++.++.. .....+. .|...+..+.|+
T Consensus 170 ~~-~~-~~~~ws--pDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~----~~~~v~~~~~~~~~~~~~~~S 241 (710)
T 2xdw_A 170 RV-KF-SCMAWT--HDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS----EDILCAEFPDEPKWMGGAELS 241 (710)
T ss_dssp EE-CS-CCEEEC--TTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEEC
T ss_pred Cc-cc-ceEEEE--eCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc----cceEEeccCCCCeEEEEEEEc
Confidence 11 14 678999 89999999988876 99999986521 2223333 355668899999
Q ss_pred cCCCCCCCCcEEEEEcC-----CC-EEEEECCC------CCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC----CcEE
Q 008363 239 PAESDSDSANVILTAGH-----GG-LKFWDIRD------PFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD----GAMR 302 (568)
Q Consensus 239 p~~~~~~~~~~las~s~-----d~-v~lwD~~~------~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d----g~I~ 302 (568)
|++ ++|+.++. +. |++||+.+ +......+..+...+.. .|+|+|..|+..+.. +.|.
T Consensus 242 pDg------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~ 314 (710)
T 2xdw_A 242 DDG------RYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLI 314 (710)
T ss_dssp TTS------CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEE
T ss_pred CCC------CEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEE
Confidence 999 77776543 45 99999986 42244555566665654 488999988877653 3699
Q ss_pred EEEccccccCCCCCCCCccCccccceEEEecCCC--CEEEEEEecCCCEEEEEeCCCe--EEEEEcCCCeeeccCCCCCc
Q 008363 303 IVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF--AIWSVQVSRLTGMVAYCSADGT--VHRFQLTAKAVEKDHSRNRP 378 (568)
Q Consensus 303 lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~--~V~~l~~sp~~~~l~s~s~Dg~--v~iwd~~~~~~~~~~~~~~~ 378 (568)
+||+.. +.. .....+..|.. .+..++|++++.++++...|+. |++|++.++...+..... .
T Consensus 315 ~~d~~~--------~~~------~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~-~ 379 (710)
T 2xdw_A 315 NIDFTD--------PEE------SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE-V 379 (710)
T ss_dssp EEETTS--------CCG------GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC-S
T ss_pred EEeCCC--------CCc------ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC-C
Confidence 999843 211 11234555544 6888999987888889988985 566677555433322221 2
Q ss_pred ceeeeecccCCCCceEE
Q 008363 379 MHFLCGSVTEDESAITV 395 (568)
Q Consensus 379 ~~~~~~s~~~~~~~i~~ 395 (568)
......++++++..+.+
T Consensus 380 ~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 380 GSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp SEEEEEECCTTCSEEEE
T ss_pred ceEEEEecCCCCCEEEE
Confidence 23333355666665554
No 169
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.42 E-value=1.4e-10 Score=115.94 Aligned_cols=240 Identities=6% Similarity=-0.043 Sum_probs=152.0
Q ss_pred eccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 96 LAHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 96 ~~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
..+.. ...+++|+|++ .+++++..++.|.+||..+++....+ .
T Consensus 41 ~~~~~-~~~~~~~~~~g----------~l~~~~~~~~~i~~~d~~~~~~~~~~--------------------------~ 83 (333)
T 2dg1_A 41 SKKGL-QLEGLNFDRQG----------QLFLLDVFEGNIFKINPETKEIKRPF--------------------------V 83 (333)
T ss_dssp ESSCC-CEEEEEECTTS----------CEEEEETTTCEEEEECTTTCCEEEEE--------------------------E
T ss_pred eccCc-cccCcEECCCC----------CEEEEECCCCEEEEEeCCCCcEEEEe--------------------------e
Confidence 34444 34599999998 77778888999999999886654322 1
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcE
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.+...+ .+++|+ ++|.+++++..+ +.|.+||..+. .....+. .+...+.+++++|++ .+
T Consensus 84 ~~~~~~-~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~~~i~~d~~g------~l 148 (333)
T 2dg1_A 84 SHKANP-AAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGD------NLQDIIEDLSTAYCIDDMVFDSKG------GF 148 (333)
T ss_dssp CSSSSE-EEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSC------SCEEEECSSSSCCCEEEEEECTTS------CE
T ss_pred CCCCCc-ceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCC------EEEEEEccCccCCcccceEECCCC------CE
Confidence 233455 899998 888888777766 68999998765 2222222 245679999999998 78
Q ss_pred EEEEcC------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCcc
Q 008363 250 ILTAGH------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 250 las~s~------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
+++... .+ |..||..+. . +..+..+...+..++|+|+++.|+.+ +.++.|++||+.. .|..+.
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~-------~g~~~~ 219 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFR-T-VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED-------DGVTIQ 219 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSC-C-EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSSSEE
T ss_pred EEEeccccccCCCceEEEEeCCCC-E-EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC-------CCcCcc
Confidence 887764 23 777776543 2 22222223457899999999877655 4578999999842 122210
Q ss_pred CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCc-----ceeeeecccCCCCceEEc
Q 008363 322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRP-----MHFLCGSVTEDESAITVN 396 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~~i~~~ 396 (568)
.........+.++ ..+..++++++|.++++...++.|.+||.....+.. ...... ....+.++++++..|.+.
T Consensus 220 ~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~-~~~~~~~~g~~~~~~~~~~~~dg~~L~v~ 297 (333)
T 2dg1_A 220 PFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ-ILIPGRDEGHMLRSTHPQFIPGTNQLIIC 297 (333)
T ss_dssp EEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE-EECTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred cccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEE-EEcCCCccccccCcceEEECCCCCEEEEE
Confidence 0000000111222 467889999999988888888999999985433222 111110 012233455676666655
Q ss_pred cc
Q 008363 397 TP 398 (568)
Q Consensus 397 ~~ 398 (568)
+.
T Consensus 298 ~~ 299 (333)
T 2dg1_A 298 SN 299 (333)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 170
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.42 E-value=8.4e-11 Score=118.98 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=122.3
Q ss_pred eEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HGG 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d~ 257 (568)
..++|+ |+|++|++++.+ +.|.+|++..... ....+.....+......+++ ++ .+|++++ .++
T Consensus 53 ~~l~~s--pdg~~l~~~~~~~~~~~~v~~~~~~~~~g--~~~~~~~~~~~~~~p~~~~~--dg------~~l~~~~~~~~ 120 (361)
T 3scy_A 53 SYLIPS--ADGKFVYSVNEFSKDQAAVSAFAFDKEKG--TLHLLNTQKTMGADPCYLTT--NG------KNIVTANYSGG 120 (361)
T ss_dssp CSEEEC--TTSSEEEEEECCSSTTCEEEEEEEETTTT--EEEEEEEEECSSSCEEEEEE--CS------SEEEEEETTTT
T ss_pred ceEEEC--CCCCEEEEEEccCCCCCcEEEEEEeCCCC--cEEEeeEeccCCCCcEEEEE--CC------CEEEEEECCCC
Confidence 789999 899999999886 8999999875310 12344455556667788888 55 5555555 566
Q ss_pred -EEEEECCCCCcc--e-e--eeC--------CCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCC----C
Q 008363 258 -LKFWDIRDPFRP--L-W--DIH--------PAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATG----K 318 (568)
Q Consensus 258 -v~lwD~~~~~~~--~-~--~~~--------~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g----~ 318 (568)
|.+|++...... + . ... .+...+.+++|+|+|++|++++. ++.|++|++.... + +
T Consensus 121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~------~~~~~~ 194 (361)
T 3scy_A 121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNA------NADNKE 194 (361)
T ss_dssp EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTC------CTTTCC
T ss_pred EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCC------Cccccc
Confidence 999999754211 1 1 111 11234588999999998877665 8899999985411 2 1
Q ss_pred -CccCccccceEEEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeeeccCC----CCCcceeeeecccCCCCc
Q 008363 319 -PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDHS----RNRPMHFLCGSVTEDESA 392 (568)
Q Consensus 319 -~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~ 392 (568)
+.. .. ........+...+..++|+|+|++|++++ .++.|.+|++.++.+..... ...........+++++..
T Consensus 195 ~l~~-~~-~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~ 272 (361)
T 3scy_A 195 KFLT-KG-TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKY 272 (361)
T ss_dssp CCEE-EE-EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSE
T ss_pred ceee-cc-cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCE
Confidence 100 00 00011223445678999999999887777 68999999998765432111 000111234467888877
Q ss_pred eEEc
Q 008363 393 ITVN 396 (568)
Q Consensus 393 i~~~ 396 (568)
+.+.
T Consensus 273 l~v~ 276 (361)
T 3scy_A 273 LYAS 276 (361)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.39 E-value=4.9e-12 Score=141.17 Aligned_cols=200 Identities=10% Similarity=0.076 Sum_probs=135.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCC---------CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceeccccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGN---------GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKC 175 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~d---------g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (568)
++.|||++ ++|+.++.+ +.+.|||+.+++... + .
T Consensus 66 ~~~~Spdg----------~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l--------------------------~ 108 (740)
T 4a5s_A 66 DYSISPDG----------QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E--------------------------E 108 (740)
T ss_dssp EEEECTTS----------SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S--------------------------S
T ss_pred ceEECCCC----------CEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c--------------------------c
Confidence 58899999 789988876 566799999976542 2 4
Q ss_pred CCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCe-----------------eEEEE
Q 008363 176 GGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPI-----------------RAVSW 237 (568)
Q Consensus 176 ~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V-----------------~~v~~ 237 (568)
.|...+ ..++|+ |||+.||.+. |+.|.+|++.++. ..+ +..++...+ ..+.|
T Consensus 109 ~~~~~~-~~~~~S--PdG~~la~~~-~~~i~~~~~~~~~------~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w 178 (740)
T 4a5s_A 109 RIPNNT-QWVTWS--PVGHKLAYVW-NNDIYVKIEPNLP------SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW 178 (740)
T ss_dssp CCCTTE-EEEEEC--SSTTCEEEEE-TTEEEEESSTTSC------CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred cCCCcc-eeeEEC--CCCCEEEEEE-CCeEEEEECCCCc------eEEEcCCCCccceecCcccccccchhcCCCcceEE
Confidence 556677 899999 9999999885 7899999998662 222 122222222 35899
Q ss_pred ccCCCCCCCCcEEEEEcCC-------------------------------------CEEEEECCC---CCc-ceeeeC--
Q 008363 238 APAESDSDSANVILTAGHG-------------------------------------GLKFWDIRD---PFR-PLWDIH-- 274 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s~d-------------------------------------~v~lwD~~~---~~~-~~~~~~-- 274 (568)
+|+| +.||.++.| .|++||+.+ +.. ....+.
T Consensus 179 SpDg------~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~ 252 (740)
T 4a5s_A 179 SPNG------TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAP 252 (740)
T ss_dssp CTTS------SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCC
T ss_pred CCCC------CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCC
Confidence 9999 788876421 167788876 421 222332
Q ss_pred ----CCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccccccCCCCCCC----CccCccccceEEE--ecCCCCEE-
Q 008363 275 ----PAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKAAYDVPATGK----PFAGTKQQGLHLV--NCSSFAIW- 339 (568)
Q Consensus 275 ----~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~~~~~~~~g~----~~~~~~~~~l~~~--~~h~~~V~- 339 (568)
+|...+..++|+|||+.++.... +..|++||+. +|+ +. .+..+ ..|...|.
T Consensus 253 ~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~--------tg~~~~~~~------~~~~l~~~~~~~~v~~ 318 (740)
T 4a5s_A 253 ASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYD--------ESSGRWNCL------VARQHIEMSTTGWVGR 318 (740)
T ss_dssp HHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEE--------TTTTEEEEC------GGGCEEEECSSSCSSS
T ss_pred ccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECC--------CCcccccee------EEEEeeeccCCceEcc
Confidence 37778999999999997766533 3479999984 344 11 01111 44554443
Q ss_pred ----EEEEecCCCEEE-EEeC-C--CeEEEEEcCCCeeec
Q 008363 340 ----SVQVSRLTGMVA-YCSA-D--GTVHRFQLTAKAVEK 371 (568)
Q Consensus 340 ----~l~~sp~~~~l~-s~s~-D--g~v~iwd~~~~~~~~ 371 (568)
.+.|+|+|+.|+ ..+. + ..|++|++.++...+
T Consensus 319 ~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 319 FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 688999998777 6653 3 458888887765443
No 172
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=1.1e-10 Score=114.66 Aligned_cols=224 Identities=8% Similarity=-0.065 Sum_probs=147.4
Q ss_pred eeeEEEEccCCCCcccccCccc-EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLG-YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~-~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
....++|+|++ + +++++..++.|.+|+..++ ...+ ..+...
T Consensus 29 ~~eg~~~d~~g----------~~l~~~~~~~~~i~~~~~~~~--~~~~--------------------------~~~~~~ 70 (296)
T 3e5z_A 29 WTEGPVYVPAR----------SAVIFSDVRQNRTWAWSDDGQ--LSPE--------------------------MHPSHH 70 (296)
T ss_dssp SEEEEEEEGGG----------TEEEEEEGGGTEEEEEETTSC--EEEE--------------------------ESSCSS
T ss_pred cccCCeEeCCC----------CEEEEEeCCCCEEEEEECCCC--eEEE--------------------------ECCCCC
Confidence 45589999999 6 8888889999999999886 4333 223344
Q ss_pred cceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC----CCCCeeEEEEccCCCCCCCCcEEEEE---
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA----DTLPIRAVSWAPAESDSDSANVILTA--- 253 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~~V~~v~~~p~~~~~~~~~~las~--- 253 (568)
+ .+++|+ ++|.++++...++.|.+||..++ ........ ....+.+++++|+| +++++.
T Consensus 71 ~-~~l~~~--~dg~l~v~~~~~~~i~~~d~~~g------~~~~~~~~~~~~~~~~~~~i~~d~~G------~l~vtd~~~ 135 (296)
T 3e5z_A 71 Q-NGHCLN--KQGHLIACSHGLRRLERQREPGG------EWESIADSFEGKKLNSPNDVCLAPDG------SLWFSDPTY 135 (296)
T ss_dssp E-EEEEEC--TTCCEEEEETTTTEEEEECSTTC------CEEEEECEETTEECCCCCCEEECTTS------CEEEEECSH
T ss_pred c-ceeeEC--CCCcEEEEecCCCeEEEEcCCCC------cEEEEeeccCCCCCCCCCCEEECCCC------CEEEECCcc
Confidence 4 889988 88888877777799999998765 22222211 12356789999999 788873
Q ss_pred -c-------------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCC
Q 008363 254 -G-------------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 254 -s-------------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
. ..+ |..+|.. + .+..+..+....+.++|+|+++.|++.+.++.|++||+.. .|.
T Consensus 136 g~~~~~~~~~~~~~~~~~~l~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~-------~g~ 205 (296)
T 3e5z_A 136 GIDKPEEGYGGEMELPGRWVFRLAPD-G--TLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNA-------RGE 205 (296)
T ss_dssp HHHCGGGSSCCCCCSSSCEEEEECTT-S--CEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECS-------SSC
T ss_pred ccccccccccccccCCCcEEEEECCC-C--CEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECC-------CCc
Confidence 2 123 5556554 2 2333445566679999999999996667789999999851 232
Q ss_pred CccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecc-cCCCCceEEcc
Q 008363 319 PFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSV-TEDESAITVNT 397 (568)
Q Consensus 319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~-~~~~~~i~~~~ 397 (568)
+. .....+..+...+.+++++++|.++++. ++.|.+|+.....+..-..... ..+..+ .+++..|.+.+
T Consensus 206 ~~-----~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t 275 (296)
T 3e5z_A 206 TE-----YQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGDELGRVLTPQT---TSNLCFGGPEGRTLYMTV 275 (296)
T ss_dssp EE-----EEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSCEEEEEECSSC---CCEEEEESTTSCEEEEEE
T ss_pred Cc-----CCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCCEEEEEECCCC---ceeEEEECCCCCEEEEEc
Confidence 20 0012223345567789999999877666 8899999987433322211111 222234 45666666654
Q ss_pred c
Q 008363 398 P 398 (568)
Q Consensus 398 ~ 398 (568)
.
T Consensus 276 ~ 276 (296)
T 3e5z_A 276 S 276 (296)
T ss_dssp T
T ss_pred C
Confidence 3
No 173
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.39 E-value=6.2e-11 Score=120.31 Aligned_cols=220 Identities=10% Similarity=0.061 Sum_probs=135.0
Q ss_pred EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.++|+|++ ++|+++. .++.|.+||+.+++.+..+..... .
T Consensus 54 ~i~~spdg----------~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~--------------~------ 103 (361)
T 2oiz_A 54 HVQVSNDG----------KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK--------------R------ 103 (361)
T ss_dssp EEEECTTS----------SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT--------------B------
T ss_pred ceEECCCC----------CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc--------------c------
Confidence 79999999 7888876 367899999998887766522100 0
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+... |..++++ |+|++|+++.. +++|.+||+.+. +.+.. +.. .+ ...+.+.|.+ +..++
T Consensus 104 ~~~g~~-p~~i~~s--pdg~~l~v~n~~~~~~v~v~d~~~~------~~~~~~i~~-~~-~~~v~~~p~~-----~~~~~ 167 (361)
T 2oiz_A 104 VQGLNY-DGLFRQT--TDGKFIVLQNASPATSIGIVDVAKG------DYVEDVTAA-AG-CWSVIPQPNR-----PRSFM 167 (361)
T ss_dssp CCBCCC-GGGEEEC--TTSSEEEEEEESSSEEEEEEETTTT------EEEEEEGGG-TT-EEEEEECTTS-----SSEEE
T ss_pred cccCCC-cceEEEC--CCCCEEEEECCCCCCeEEEEECCCC------cEEEEEecC-CC-cceeEEcCCC-----CeeEE
Confidence 011122 3778988 89999998874 689999999876 55555 321 11 1223333433 12333
Q ss_pred EEcCCC-------------------------------------------------EEEEECCCCCcce-eeeC--C----
Q 008363 252 TAGHGG-------------------------------------------------LKFWDIRDPFRPL-WDIH--P---- 275 (568)
Q Consensus 252 s~s~d~-------------------------------------------------v~lwD~~~~~~~~-~~~~--~---- 275 (568)
+.+.|+ |.++|+......+ ..+. .
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~ 247 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDK 247 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHH
T ss_pred EECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCcccc
Confidence 333333 4444443221000 0000 0
Q ss_pred C----CCCeEEEEEcCCCCEEEEEeC-----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 276 A----PKFIYGLDWLPDPGCVILSFD-----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 276 h----~~~i~~l~~sp~~~~l~s~~~-----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
+ ......++|+|++..++++.. .+.|.+||+.+ ++ .+..+..+. +++
T Consensus 248 ~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t--------~~--------~v~~i~~~~--p~~ 309 (361)
T 2oiz_A 248 AKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT--------KQ--------RVARIPGRD--ALS 309 (361)
T ss_dssp HTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT--------TE--------EEEEEECTT--CCE
T ss_pred ccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC--------Cc--------EEEEEecCC--eeE
Confidence 0 001112688999888887643 34799999843 43 346777776 899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCC--eeeccC-CCCCcceeeeecccCCCC
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAK--AVEKDH-SRNRPMHFLCGSVTEDES 391 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~--~~~~~~-~~~~~~~~~~~s~~~~~~ 391 (568)
++|+|+|++|++++. +.|.+||+.++ +..... ..-..|+.+ .++++|.
T Consensus 310 ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~--~~~p~G~ 360 (361)
T 2oiz_A 310 MTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQV--QFHPVGG 360 (361)
T ss_dssp EEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEE--EECCCSC
T ss_pred EEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEE--EecCCCC
Confidence 999999999998887 99999999998 766552 333445444 4555553
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.36 E-value=4.5e-12 Score=129.56 Aligned_cols=219 Identities=10% Similarity=-0.056 Sum_probs=139.7
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCC---CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
+..++|+|+| ++|+.+... ..|.+||+.+++..... .++..
T Consensus 38 ~~~~~~SpdG----------~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--------------------------~~~~~ 81 (396)
T 3c5m_A 38 FYQKCFTQDG----------KKLLFAGDFDGNRNYYLLNLETQQAVQLT--------------------------EGKGD 81 (396)
T ss_dssp TTSCCBCTTS----------CEEEEEECTTSSCEEEEEETTTTEEEECC--------------------------CSSCB
T ss_pred eecCcCCCCC----------CEEEEEEecCCCceEEEEECCCCcEEEee--------------------------cCCCC
Confidence 4478999999 677776543 36888898886543221 22222
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeE-------------------EEEccC
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRA-------------------VSWAPA 240 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~-------------------v~~~p~ 240 (568)
.. ..+.|+ |+|++|+.++.++.|.+||+.++ .....+..+...... +.|+|+
T Consensus 82 ~~-~~~~~s--pdg~~l~~~~~~~~l~~~d~~~~------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spd 152 (396)
T 3c5m_A 82 NT-FGGFIS--TDERAFFYVKNELNLMKVDLETL------EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPL 152 (396)
T ss_dssp CT-TTCEEC--TTSSEEEEEETTTEEEEEETTTC------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCC
T ss_pred cc-ccceEC--CCCCEEEEEEcCCcEEEEECCCC------CcEEEEecccccCCCCCEEEeccCCccccccccccccCCC
Confidence 22 347899 89999999999999999999866 444444444443222 345666
Q ss_pred CCCCCCCcEEEEE-----cCCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCC------CcEEEEEcc
Q 008363 241 ESDSDSANVILTA-----GHGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDD------GAMRIVSLL 307 (568)
Q Consensus 241 ~~~~~~~~~las~-----s~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~d------g~I~lwd~~ 307 (568)
+ ..++.+ ..+. |.+||+.++ ...... .+...+..+.|+| ++..|+..+.+ ..|.+||+.
T Consensus 153 g------~~~~~~~~~~~~~~~~l~~~d~~~g-~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~ 224 (396)
T 3c5m_A 153 T------SWEKFAEFYHTNPTCRLIKVDIETG-ELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED 224 (396)
T ss_dssp C------SHHHHHHHHHTCCCEEEEEEETTTC-CEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT
T ss_pred C------cceeeeeeccCCCcceEEEEECCCC-cEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECC
Confidence 6 455443 2345 999999876 333222 4566789999999 88877776553 358888873
Q ss_pred ccccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeeccCCCCCcce
Q 008363 308 KAAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKDHSRNRPMH 380 (568)
Q Consensus 308 ~~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~~~~~~~~~ 380 (568)
. ++. ..+..+ ...+..++|+|+|++|+.++.+ +.|++||+.++......... .
T Consensus 225 ~--------~~~---------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~ 284 (396)
T 3c5m_A 225 G--------SNV---------RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP---P 284 (396)
T ss_dssp S--------CCC---------EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC---S
T ss_pred C--------Cce---------eEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC---C
Confidence 2 221 122222 2357889999999988777654 55999999877654321111 1
Q ss_pred eeeecccC-CCCceEE
Q 008363 381 FLCGSVTE-DESAITV 395 (568)
Q Consensus 381 ~~~~s~~~-~~~~i~~ 395 (568)
.. ..+++ ++..+..
T Consensus 285 ~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 285 CS-HLMSNFDGSLMVG 299 (396)
T ss_dssp EE-EEEECSSSSEEEE
T ss_pred CC-CCccCCCCceEEE
Confidence 11 45666 7765554
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.36 E-value=8.5e-11 Score=117.61 Aligned_cols=204 Identities=8% Similarity=0.089 Sum_probs=142.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc-eeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR-TMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~-~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
....|+++|++ .++++...++.|++|+..... .+..+.... ..+. ..++...
T Consensus 92 ~p~gia~d~~g----------~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~-~~g~----------------~~~~~~~ 144 (329)
T 3fvz_A 92 LPHGLSIDTDG----------NYWVTDVALHQVFKLDPHSKEGPLLILGRSM-QPGS----------------DQNHFCQ 144 (329)
T ss_dssp SEEEEEECTTS----------CEEEEETTTTEEEEECTTCSSCCSEEESBTT-BCCC----------------STTCCSS
T ss_pred CceEEEECCCC----------CEEEEECCCCEEEEEeCCCCeEEEEEecccC-CCCC----------------CccccCC
Confidence 34589999999 788888889999999986532 343331100 0000 0123333
Q ss_pred cceEEEEccCC-CCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC----------CCCCeeEEEEccC-CCCCCCC
Q 008363 181 IPLTMEWSTSP-PHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA----------DTLPIRAVSWAPA-ESDSDSA 247 (568)
Q Consensus 181 V~~~v~~s~~~-~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h~~~V~~v~~~p~-~~~~~~~ 247 (568)
|..|+++ + ++.++++.+ .++.|++|+.. + ..+..+.. +-.....|+++|+ +
T Consensus 145 -P~~ia~~--~~~g~lyv~d~~~~~~I~~~~~~-g------~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g------ 208 (329)
T 3fvz_A 145 -PTDVAVE--PSTGAVFVSDGYCNSRIVQFSPS-G------KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD------ 208 (329)
T ss_dssp -EEEEEEC--TTTCCEEEEECSSCCEEEEECTT-S------CEEEEECEECCSSSCCTTEESCEEEEEEETTTT------
T ss_pred -CcEEEEe--CCCCeEEEEeCCCCCeEEEEcCC-C------CEEEEeccCCCCCCCCCcccCCCcEEEEECCCC------
Confidence 4899988 7 677888886 69999999943 3 45555532 2234899999998 6
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEE-------eCCCcEEEEEccccccCCCCCC
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILS-------FDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~-------~~dg~I~lwd~~~~~~~~~~~g 317 (568)
.++++...++ |++||..++ ..+..+ ..+...+..++|+| +..+++. ..+..|++||+. +|
T Consensus 209 ~l~v~d~~~~~I~~~~~~~G-~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~--------~g 278 (329)
T 3fvz_A 209 QLCVADRENGRIQCFKTDTK-EFVREIKHASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFS--------SG 278 (329)
T ss_dssp EEEEEETTTTEEEEEETTTC-CEEEEECCTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETT--------TC
T ss_pred EEEEEECCCCEEEEEECCCC-cEEEEEeccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcC--------CC
Confidence 7888877777 999999865 555555 34566789999999 3333332 335589999984 35
Q ss_pred CCccCccccceEEE---ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 318 KPFAGTKQQGLHLV---NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 318 ~~~~~~~~~~l~~~---~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+.+ ..+ .++...+..|+++|+|.++++...++.|++|++..
T Consensus 279 ~~~--------~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 279 EII--------DVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CEE--------EEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eEE--------EEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 443 344 35667789999999998888888999999999853
No 176
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.35 E-value=1.8e-11 Score=125.03 Aligned_cols=211 Identities=8% Similarity=-0.018 Sum_probs=129.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
....+.|+|++ +.|+.++.++.|++|++.+++.......+.. . .+.-..+. ........
T Consensus 82 ~~~~~~~spdg----------~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~---~~~g~~l~-~~~~~~~~ 140 (396)
T 3c5m_A 82 NTFGGFISTDE----------RAFFYVKNELNLMKVDLETLEEQVIYTVDEE-------W---KGYGTWVA-NSDCTKLV 140 (396)
T ss_dssp CTTTCEECTTS----------SEEEEEETTTEEEEEETTTCCEEEEEECCTT-------E---EEEEEEEE-CTTSSEEE
T ss_pred ccccceECCCC----------CEEEEEEcCCcEEEEECCCCCcEEEEecccc-------c---CCCCCEEE-eccCCccc
Confidence 33248899999 7999999999999999998765544322211 0 00000000 00000000
Q ss_pred ---ceEEEEccCCCCCEEEEE-----eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEE
Q 008363 182 ---PLTMEWSTSPPHDYLLAG-----CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILT 252 (568)
Q Consensus 182 ---~~~v~~s~~~~g~~l~sg-----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las 252 (568)
...++|+ |+++.++.+ ..+..|.+||+.++ ...... .+...+..+.|+| ++ ..|+.
T Consensus 141 ~~~~~~~~~s--pdg~~~~~~~~~~~~~~~~l~~~d~~~g------~~~~~~-~~~~~~~~~~~sp~dg------~~l~~ 205 (396)
T 3c5m_A 141 GIEILKRDWQ--PLTSWEKFAEFYHTNPTCRLIKVDIETG------ELEVIH-QDTAWLGHPIYRPFDD------STVGF 205 (396)
T ss_dssp EEEEEGGGCC--CCCSHHHHHHHHHTCCCEEEEEEETTTC------CEEEEE-EESSCEEEEEEETTEE------EEEEE
T ss_pred cccccccccC--CCCcceeeeeeccCCCcceEEEEECCCC------cEEeec-cCCcccccceECCCCC------CEEEE
Confidence 0013455 777776654 45678999999866 333333 4667799999999 66 55655
Q ss_pred EcC--C----C-EEEEECCCCCcceeeeCCC--CCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCC
Q 008363 253 AGH--G----G-LKFWDIRDPFRPLWDIHPA--PKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 253 ~s~--d----~-v~lwD~~~~~~~~~~~~~h--~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~ 318 (568)
++. . . |.+||+... . ...+..+ ...+..++|+|+|++|+.++.+ +.|++||+.. |+
T Consensus 206 ~~~~~~~~~~~~l~~~d~~~~-~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~--------g~ 275 (396)
T 3c5m_A 206 CHEGPHDLVDARMWLVNEDGS-N-VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET--------LE 275 (396)
T ss_dssp EECSCSSSCSCCCEEEETTSC-C-CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT--------CC
T ss_pred EecCCCCCCCceEEEEECCCC-c-eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC--------CC
Confidence 443 2 4 888998754 2 2223223 2257889999999988877543 4499999843 43
Q ss_pred CccCccccceEEEecCCCCEEEEEEec-CCCEEEEEe----------------CCCeEEEEEcCCCee
Q 008363 319 PFAGTKQQGLHLVNCSSFAIWSVQVSR-LTGMVAYCS----------------ADGTVHRFQLTAKAV 369 (568)
Q Consensus 319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s----------------~Dg~v~iwd~~~~~~ 369 (568)
.. .+..+. ... +.|+| +|++|++++ .++.|++||+.++..
T Consensus 276 ~~------~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 276 NE------EVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp EE------EEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred eE------EeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 21 111222 123 89999 999888765 347899999987654
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.35 E-value=5e-11 Score=131.05 Aligned_cols=206 Identities=13% Similarity=0.027 Sum_probs=136.1
Q ss_pred cCCceeeEEEEccCCCCcccccCcccEEEEEeCC----------CcEEEEECCC------CceeeEEeccCCccCCCCce
Q 008363 98 HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN----------GSLEVWEVPL------LRTMKAIYLSSMKEGTDPRF 161 (568)
Q Consensus 98 h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d----------g~V~iwd~~~------~~~~~~l~~~~~~~~~~~~~ 161 (568)
|.. .+..++|+|+| +.|++++.+ ..|++||+.+ +.. ..+
T Consensus 128 ~~~-~~~~~~~spDg----------~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l------------- 182 (662)
T 3azo_A 128 GGL-RWADPVLLPER----------GEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-REL------------- 182 (662)
T ss_dssp TCE-EEEEEEEETTT----------TEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EES-------------
T ss_pred CCc-cccCcEECCCC----------CEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEE-------------
Confidence 444 55699999999 789888877 5899999987 433 222
Q ss_pred EEEeecceeccccc-CCcCccceEEEEccCCCCCEEEEEeCCC--------eEEEEEccC-CCCCCCCceeEEeeCCCCC
Q 008363 162 VKLEPVFRCSMLKC-GGTQSIPLTMEWSTSPPHDYLLAGCHDG--------TVALWKFVA-SDSSIDSRPLLCFSADTLP 231 (568)
Q Consensus 162 v~~~~~~~~~~~~~-~h~~~V~~~v~~s~~~~g~~l~sgs~Dg--------~I~iwd~~~-~~~~~~~~~~~~~~~h~~~ 231 (568)
. .+...+ ..++|+ |||++|+.++.++ .|.+||+.. +.. ........+|...
T Consensus 183 -------------~~~~~~~~-~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~---~~~~~l~~~~~~~ 243 (662)
T 3azo_A 183 -------------SDDAHRFV-TGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF---ADTRTLLGGPEEA 243 (662)
T ss_dssp -------------SCSCSSEE-CCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE---EEEEEEEEETTBC
T ss_pred -------------EecCCCcc-cCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc---cccEEeCCCCCce
Confidence 3 334455 788999 9999999887553 799999983 310 0233344456788
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCCC---EEEEECCCCCcceeeeCCCCCC--------eEEEEEcCCCCEEEEEeCCCc
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHGG---LKFWDIRDPFRPLWDIHPAPKF--------IYGLDWLPDPGCVILSFDDGA 300 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d~---v~lwD~~~~~~~~~~~~~h~~~--------i~~l~~sp~~~~l~s~~~dg~ 300 (568)
+..++|+|++ +++++++.++ |.+||+.++ ........+... +..++|+|+++++++++. +.
T Consensus 244 ~~~~~~spdg------~l~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~ 315 (662)
T 3azo_A 244 IAQAEWAPDG------SLIVATDRTGWWNLHRVDPATG-AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GA 315 (662)
T ss_dssp EEEEEECTTS------CEEEEECTTSSCEEEEECTTTC-CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SS
T ss_pred EcceEECCCC------eEEEEECCCCCeEEEEEECCCC-ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Cc
Confidence 9999999999 7888887775 566666444 322222222221 467899999999999988 99
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEE-EEecCCCEEEEEeCCC--eEEEEEcCCCeee
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSV-QVSRLTGMVAYCSADG--TVHRFQLTAKAVE 370 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l-~~sp~~~~l~s~s~Dg--~v~iwd~~~~~~~ 370 (568)
++||.+.. .+++ +..+..|...+..+ +++.+.-++++++.+. .|++||+.++...
T Consensus 316 ~~l~~~d~------~~~~---------~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 316 AVLGILDP------ESGE---------LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp CEEEEEET------TTTE---------EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred cEEEEEEC------CCCc---------EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 99995532 1122 34667777777776 4443333444555554 4555666666543
No 178
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=2.2e-10 Score=111.55 Aligned_cols=186 Identities=10% Similarity=0.056 Sum_probs=139.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
++|++++.|+.|.+||..+++.+..+.. +. ..+ .++.+. |+|++|+ +.
T Consensus 6 ~~lv~~~~~~~v~~~d~~tG~~~w~~~~--------------------------~~~~~~-~~~~~~--pdG~ilv--s~ 54 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDTKEIVWEYPL--------------------------EKGWEC-NSVAAT--KAGEILF--SY 54 (276)
T ss_dssp EEEEECTTCSEEEEEETTTTEEEEEEEC--------------------------CTTCCC-CEEEEC--TTSCEEE--EC
T ss_pred cEEEeeCCCCEEEEEECCCCeEEEEeCC--------------------------CccCCC-cCeEEC--CCCCEEE--eC
Confidence 6899999999999999999988876522 22 233 778877 8898888 45
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcceeeeC----
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRPLWDIH---- 274 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~~~~~~---- 274 (568)
++.|..||. ++ +.+..+..+. ..+.++.+.+++ ++|++.+. ++ |..+|.. + +.++.+.
T Consensus 55 ~~~V~~~d~-~G------~~~W~~~~~~~~~~~~~~~~~dG------~~lv~~~~~~~~v~~vd~~-G-k~l~~~~~~~~ 119 (276)
T 3no2_A 55 SKGAKMITR-DG------RELWNIAAPAGCEMQTARILPDG------NALVAWCGHPSTILEVNMK-G-EVLSKTEFETG 119 (276)
T ss_dssp BSEEEEECT-TS------CEEEEEECCTTCEEEEEEECTTS------CEEEEEESTTEEEEEECTT-S-CEEEEEEECCS
T ss_pred CCCEEEECC-CC------CEEEEEcCCCCccccccEECCCC------CEEEEecCCCCEEEEEeCC-C-CEEEEEeccCC
Confidence 788999998 55 6777776653 568899999999 88888776 55 7777763 4 4443332
Q ss_pred --CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEE
Q 008363 275 --PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAY 352 (568)
Q Consensus 275 --~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s 352 (568)
.+......+++.++|.+|++...++.|.+||. .|+.+ ..+..+ ..+.++.+.+++.+|++
T Consensus 120 ~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~---------~G~~~--------w~~~~~-~~~~~~~~~~~g~~~v~ 181 (276)
T 3no2_A 120 IERPHAQFRQINKNKKGNYLVPLFATSEVREIAP---------NGQLL--------NSVKLS-GTPFSSAFLDNGDCLVA 181 (276)
T ss_dssp CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECT---------TSCEE--------EEEECS-SCCCEEEECTTSCEEEE
T ss_pred CCcccccccCceECCCCCEEEEecCCCEEEEECC---------CCCEE--------EEEECC-CCccceeEcCCCCEEEE
Confidence 11123456678999999999999999999998 26554 455544 34567788899999999
Q ss_pred EeCCCeEEEEEcCCCeeecc
Q 008363 353 CSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 353 ~s~Dg~v~iwd~~~~~~~~~ 372 (568)
++.++.|..+|..++++.-.
T Consensus 182 ~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 182 CGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CBTTSEEEEECTTTCCEEEE
T ss_pred eCCCCeEEEEeCcCCcEEEE
Confidence 99889999999998876433
No 179
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.30 E-value=6.6e-10 Score=109.08 Aligned_cols=204 Identities=9% Similarity=-0.052 Sum_probs=135.8
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+.. .+.+++|+|++ .++++...++.|.+||..+++......... ..
T Consensus 66 ~~~~-~~~~l~~~~dg----------~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~----------------------~~ 112 (296)
T 3e5z_A 66 HPSH-HQNGHCLNKQG----------HLIACSHGLRRLERQREPGGEWESIADSFE----------------------GK 112 (296)
T ss_dssp SSCS-SEEEEEECTTC----------CEEEEETTTTEEEEECSTTCCEEEEECEET----------------------TE
T ss_pred CCCC-CcceeeECCCC----------cEEEEecCCCeEEEEcCCCCcEEEEeeccC----------------------CC
Confidence 3444 56699999999 777777777899999998766543221000 01
Q ss_pred CcCccceEEEEccCCCCCEEEEEeC-----------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCH-----------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP 239 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~-----------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p 239 (568)
....+ ..++++ ++|+++++.+. .+.|..++.. + .+..+..+......++|+|
T Consensus 113 ~~~~~-~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-------~~~~~~~~~~~~~gi~~s~ 181 (296)
T 3e5z_A 113 KLNSP-NDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-------TLSAPIRDRVKPNGLAFLP 181 (296)
T ss_dssp ECCCC-CCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-------CEEEEECCCSSEEEEEECT
T ss_pred CCCCC-CCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-------CEEEeecCCCCCccEEECC
Confidence 11223 678888 88988887321 2344444433 2 2334456667789999999
Q ss_pred CCCCCCCCcEEEEEcCCC-EEEEECCCCCcc---eeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCC
Q 008363 240 AESDSDSANVILTAGHGG-LKFWDIRDPFRP---LWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 240 ~~~~~~~~~~las~s~d~-v~lwD~~~~~~~---~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~ 315 (568)
++ ++|++.+.++ |.+||+...... ...+..+...+..++++++|+++++. ++.|.+||..
T Consensus 182 dg------~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-------- 245 (296)
T 3e5z_A 182 SG------NLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-------- 245 (296)
T ss_dssp TS------CEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT--------
T ss_pred CC------CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC--------
Confidence 99 7777777777 999999722122 22233345566789999999866655 8899999983
Q ss_pred CCCCccCccccceEEEecCCCCEEEEEE-ecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 316 TGKPFAGTKQQGLHLVNCSSFAIWSVQV-SRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~~~h~~~V~~l~~-sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
|+. +..+..+.. +.+++| +|+++.|++++.+ .+..+++.+..+++
T Consensus 246 -g~~--------~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 246 -GDE--------LGRVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLEH 291 (296)
T ss_dssp -SCE--------EEEEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCCC
T ss_pred -CCE--------EEEEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccccc
Confidence 433 356666766 899999 5888888888876 45556666655543
No 180
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.29 E-value=3.9e-11 Score=120.21 Aligned_cols=157 Identities=8% Similarity=0.111 Sum_probs=113.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcE-EEEEcCCC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANV-ILTAGHGG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~-las~s~d~-v~ 259 (568)
+.++++ +++.++++++.+++|.+||+.++ +.+..+..+. ..+..++|+|++ ++ ++++..++ |.
T Consensus 3 ~g~~~~--~~~~~~v~~~~~~~v~~~d~~~~------~~~~~~~~~~~~~~~~~~~s~dg------~~~~v~~~~~~~i~ 68 (349)
T 1jmx_B 3 TGPALK--AGHEYMIVTNYPNNLHVVDVASD------TVYKSCVMPDKFGPGTAMMAPDN------RTAYVLNNHYGDIY 68 (349)
T ss_dssp -CCCCC--TTCEEEEEEETTTEEEEEETTTT------EEEEEEECSSCCSSCEEEECTTS------SEEEEEETTTTEEE
T ss_pred cccccc--CCCEEEEEeCCCCeEEEEECCCC------cEEEEEecCCCCCCceeEECCCC------CEEEEEeCCCCcEE
Confidence 344555 77889999999999999999876 6666665443 257899999998 54 55666677 99
Q ss_pred EEECCCCCcceeeeC-CC-----CCCeEEEEEcCCCCEEEEEeCC------------CcEEEEEccccccCCCCCCCCcc
Q 008363 260 FWDIRDPFRPLWDIH-PA-----PKFIYGLDWLPDPGCVILSFDD------------GAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 260 lwD~~~~~~~~~~~~-~h-----~~~i~~l~~sp~~~~l~s~~~d------------g~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
+||+.++ ..+..+. .+ ...+..++|+|+|++|++++.+ +.|.+||+.. ++..
T Consensus 69 ~~d~~t~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~--------~~~~- 138 (349)
T 1jmx_B 69 GIDLDTC-KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--------GLEA- 138 (349)
T ss_dssp EEETTTT-EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--------GGGB-
T ss_pred EEeCCCC-cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCC--------cccc-
Confidence 9999876 5554443 22 1236789999999999998865 8999999954 2221
Q ss_pred CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
..+..+.. ...+.+++|+|+++ |++++ +.|++||+.+++...
T Consensus 139 ----~~~~~~~~-~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 139 ----KPVRTFPM-PRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTV 180 (349)
T ss_dssp ----CCSEEEEC-CSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEE
T ss_pred ----ceeeeccC-CCcccceeECCCCc-EEEcc--CcEEEEeCCCCceec
Confidence 22234443 34678999999999 55554 349999998776543
No 181
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.27 E-value=6.3e-10 Score=123.14 Aligned_cols=231 Identities=10% Similarity=-0.076 Sum_probs=142.3
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEE-----EeCCCcEEEEECCCCcee-eEEeccCCccCCCCceEEEeeccee
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAV-----LLGNGSLEVWEVPLLRTM-KAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las-----~s~dg~V~iwd~~~~~~~-~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
+|.. .+..++|||+| ++||. |+.+..|++||+.+++.+ ...
T Consensus 118 ~~~~-~~~~~~~SPDG----------~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------- 164 (695)
T 2bkl_A 118 DGTV-SLGTWAVSWDG----------KKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV---------------------- 164 (695)
T ss_dssp SSCE-EEEEEEECTTS----------SEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------------
T ss_pred CCCE-EEEEEEECCCC----------CEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------------
Confidence 4543 56699999999 78883 344568999999997654 110
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCCe-------------EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEE
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGT-------------VALWKFVASDSSIDSRPLLCFSADTLPIRAVSW 237 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~ 237 (568)
.... .. ..++|+ |+|+.|+.++.|.. |++|++.++.. ....+.....|...+..+.|
T Consensus 165 ----~~~~-~~-~~~~ws--pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~--~~~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 165 ----IEGG-KY-ATPKWT--PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPS--KDTVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp ----BSCC-TT-CCCEEC--TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGG--GCEEEECCCCCTTCEEEEEE
T ss_pred ----cCcc-cc-cceEEe--cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCch--hceEEEecCCCCEEEEEEEE
Confidence 1111 11 568999 89999999998876 99999987621 01133333345667899999
Q ss_pred ccCCCCCCCCcEEEEEc-CC---C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEccc
Q 008363 238 APAESDSDSANVILTAG-HG---G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLK 308 (568)
Q Consensus 238 ~p~~~~~~~~~~las~s-~d---~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~ 308 (568)
+|+| ++|+.++ .+ . |.+||..++ ....+..+...+....| ++|. |+..+. ++.|.+||+..
T Consensus 235 SpDG------~~l~~~~~~~~~~~~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~ 304 (695)
T 2bkl_A 235 SRDG------KYLFVYILRGWSENDVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAK 304 (695)
T ss_dssp CTTS------CCEEEEEEETTTEEEEEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTB
T ss_pred CCCC------CEEEEEEeCCCCceEEEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCC
Confidence 9999 5555443 33 2 777765443 33344445555666666 5666 555443 57899999843
Q ss_pred cccCCCCCCCCccCccccceEEEecC--CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC-CCeeeccCCCCCcceeeeec
Q 008363 309 AAYDVPATGKPFAGTKQQGLHLVNCS--SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT-AKAVEKDHSRNRPMHFLCGS 385 (568)
Q Consensus 309 ~~~~~~~~g~~~~~~~~~~l~~~~~h--~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~s 385 (568)
+.. .....+..| ...|..++|+ ++.++++...|+..+||.+. .+...+.............+
T Consensus 305 --------~~~------~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~ 369 (695)
T 2bkl_A 305 --------PAR------ASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLM 369 (695)
T ss_dssp --------CSG------GGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCB
T ss_pred --------CCc------cCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEee
Confidence 221 011233333 4567888998 67888999999998888765 23322221111122233335
Q ss_pred ccCCCCceEE
Q 008363 386 VTEDESAITV 395 (568)
Q Consensus 386 ~~~~~~~i~~ 395 (568)
+++++..+.+
T Consensus 370 ~s~d~~~l~~ 379 (695)
T 2bkl_A 370 GLEDLDDAYY 379 (695)
T ss_dssp SCTTCSEEEE
T ss_pred cCCCCCEEEE
Confidence 5566665553
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=5.7e-10 Score=107.61 Aligned_cols=195 Identities=6% Similarity=-0.078 Sum_probs=134.8
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
++++++.+++ .++++.. ++.|.+||....... .+. ......+
T Consensus 69 p~~i~~~~~g----------~l~v~~~-~~~i~~~d~~~~~~~-~~~-------------------------~~~~~~p- 110 (270)
T 1rwi_B 69 PQGLAVDGAG----------TVYVTDF-NNRVVTLAAGSNNQT-VLP-------------------------FDGLNYP- 110 (270)
T ss_dssp CCCEEECTTC----------CEEEEET-TTEEEEECTTCSCCE-ECC-------------------------CCSCSSE-
T ss_pred cceeEECCCC----------CEEEEcC-CCEEEEEeCCCceEe-eee-------------------------cCCcCCC-
Confidence 4489999998 6555555 889999998764322 110 1112233
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
..+++. ++|.++++...++.|.+|+.... ........+...+.+|++++++ +++++...++ |.+|
T Consensus 111 ~~i~~~--~~g~l~v~~~~~~~i~~~~~~~~------~~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 111 EGLAVD--TQGAVYVADRGNNRVVKLAAGSK------TQTVLPFTGLNDPDGVAVDNSG------NVYVTDTDNNRVVKL 176 (270)
T ss_dssp EEEEEC--TTCCEEEEEGGGTEEEEECTTCC------SCEECCCCSCCSCCCEEECTTC------CEEEEEGGGTEEEEE
T ss_pred cceEEC--CCCCEEEEECCCCEEEEEECCCc------eeEeeccccCCCceeEEEeCCC------CEEEEECCCCEEEEE
Confidence 888988 78888887777899999975433 2222122333467899999998 7888877666 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCCEEE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFAIWS 340 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~V~~ 340 (568)
|.... ........+...+..|+++++|..+++...++.|.+||... ... ..+. .+-..+.+
T Consensus 177 ~~~~~-~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~---------~~~--------~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 177 EAESN-NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS---------TTS--------TVLPFTGLNTPLA 238 (270)
T ss_dssp CTTTC-CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTC---------SCC--------EECCCCSCSCEEE
T ss_pred ecCCC-ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCC---------Ccc--------eeeccCCCCCcee
Confidence 98865 32222223336689999999997666666788999999832 211 1111 23356899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
++++++|.++++...++.|++|++...
T Consensus 239 i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 239 VAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999999998899999999999998643
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=1.2e-09 Score=105.43 Aligned_cols=196 Identities=7% Similarity=-0.082 Sum_probs=130.4
Q ss_pred eEEEEccCCCCcccccCcccEEE-EEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLA-VLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~la-s~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.++++++++ .+++ +.+.++.|.+|+..+....... ..+...+
T Consensus 27 ~~i~~~~~g----------~l~v~~~~~~~~i~~~~~~~~~~~~~~--------------------------~~~~~~p- 69 (270)
T 1rwi_B 27 SGVAVDSAG----------NVYVTSEGMYGRVVKLATGSTGTTVLP--------------------------FNGLYQP- 69 (270)
T ss_dssp EEEEECTTC----------CEEEEECSSSCEEEEECC-----EECC--------------------------CCSCCSC-
T ss_pred cceEECCCC----------CEEEEccCCCCcEEEecCCCcccceEe--------------------------eCCcCCc-
Confidence 389999998 6666 4477899999987653321110 1122233
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.++++. ++|.++++.. ++.|.+||.... . ...+. .....+.+|++++++ .++++...++ |.+
T Consensus 70 ~~i~~~--~~g~l~v~~~-~~~i~~~d~~~~------~-~~~~~~~~~~~p~~i~~~~~g------~l~v~~~~~~~i~~ 133 (270)
T 1rwi_B 70 QGLAVD--GAGTVYVTDF-NNRVVTLAAGSN------N-QTVLPFDGLNYPEGLAVDTQG------AVYVADRGNNRVVK 133 (270)
T ss_dssp CCEEEC--TTCCEEEEET-TTEEEEECTTCS------C-CEECCCCSCSSEEEEEECTTC------CEEEEEGGGTEEEE
T ss_pred ceeEEC--CCCCEEEEcC-CCEEEEEeCCCc------e-EeeeecCCcCCCcceEECCCC------CEEEEECCCCEEEE
Confidence 788988 7887666655 889999998754 1 22222 233568999999998 7888877766 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||..+. ............+..|+++|+|+.+++...++.|.+||... +... .....+...+.+
T Consensus 134 ~~~~~~-~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~--------~~~~--------~~~~~~~~~p~~ 196 (270)
T 1rwi_B 134 LAAGSK-TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES--------NNQV--------VLPFTDITAPWG 196 (270)
T ss_dssp ECTTCC-SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT--------CCEE--------ECCCSSCCSEEE
T ss_pred EECCCc-eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC--------CceE--------eecccCCCCceE
Confidence 986654 22222222334578899999999666666688999999842 1110 111123356789
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
++++++|.++++...++.|.+|+......
T Consensus 197 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~ 225 (270)
T 1rwi_B 197 IAVDEAGTVYVTEHNTNQVVKLLAGSTTS 225 (270)
T ss_dssp EEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred EEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence 99999998888777889999999876543
No 184
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.26 E-value=1.3e-10 Score=116.03 Aligned_cols=192 Identities=9% Similarity=-0.009 Sum_probs=132.6
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+++++|+|++ ..++..+.++.+++| .+.....+ .++...+
T Consensus 8 ~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~~~--------------------------~~~~~~~- 47 (333)
T 2dg1_A 8 LPTLFYSGKS----------NSAVPIISESELQTI---TAEPWLEI--------------------------SKKGLQL- 47 (333)
T ss_dssp CCBCCSCGGG----------GCSSCCCCGGGSCEE---ECEEEEEE--------------------------ESSCCCE-
T ss_pred cceeeecCCc----------cceeEEeecccCccc---ccceeEEE--------------------------eccCccc-
Confidence 4578888887 566666778889999 22333333 3344444
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----C-
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG----G- 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d----~- 257 (568)
.+++|+ ++|.+++++..++.|.+||..++ ........+...+.+++|++++ ++++++..+ +
T Consensus 48 ~~~~~~--~~g~l~~~~~~~~~i~~~d~~~~------~~~~~~~~~~~~~~~i~~~~dg------~l~v~~~~~~~~~~~ 113 (333)
T 2dg1_A 48 EGLNFD--RQGQLFLLDVFEGNIFKINPETK------EIKRPFVSHKANPAAIKIHKDG------RLFVCYLGDFKSTGG 113 (333)
T ss_dssp EEEEEC--TTSCEEEEETTTCEEEEECTTTC------CEEEEEECSSSSEEEEEECTTS------CEEEEECTTSSSCCE
T ss_pred cCcEEC--CCCCEEEEECCCCEEEEEeCCCC------cEEEEeeCCCCCcceEEECCCC------cEEEEeCCCCCCCce
Confidence 889998 88888888889999999998865 4433333566789999999998 788887766 5
Q ss_pred EEEEECCCCCcceeeeC--CCCCCeEEEEEcCCCCEEEEEeC------CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 258 LKFWDIRDPFRPLWDIH--PAPKFIYGLDWLPDPGCVILSFD------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
|.+||..+.. ....+. .+...++.++++|+|+.+++... .+.|..||.. +++. .
T Consensus 114 i~~~d~~~~~-~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~--------~~~~---------~ 175 (333)
T 2dg1_A 114 IFAATENGDN-LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD--------FRTV---------T 175 (333)
T ss_dssp EEEECTTSCS-CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT--------SCCE---------E
T ss_pred EEEEeCCCCE-EEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC--------CCEE---------E
Confidence 9999988763 221222 33456899999999987776653 2445555542 1222 2
Q ss_pred EEecCCCCEEEEEEecCCCEEE-EEeCCCeEEEEEcCC
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVA-YCSADGTVHRFQLTA 366 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~~ 366 (568)
.+..+...+..++|+|++++|+ +.+.++.|.+|++.+
T Consensus 176 ~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 176 PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 2223334578999999998554 455688999999853
No 185
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.24 E-value=2.6e-10 Score=114.45 Aligned_cols=182 Identities=13% Similarity=0.159 Sum_probs=121.2
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCC---C--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---G--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG 177 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---g--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h 177 (568)
+..++|+|+| +.||.++.+ + .|.+|++.+++..... ..
T Consensus 61 ~~~~~~SpDg----------~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~--------------------------~~- 103 (347)
T 2gop_A 61 ATMPRISPDG----------KKIAFMRANEEKKVSEIWVADLETLSSKKIL--------------------------EA- 103 (347)
T ss_dssp CEEEEECTTS----------SEEEEEEEETTTTEEEEEEEETTTTEEEEEE--------------------------EE-
T ss_pred CCCeEECCCC----------CEEEEEEeccCCCcceEEEEECCCCceEEEE--------------------------cC-
Confidence 4589999999 788877754 3 3778888876654332 11
Q ss_pred cCccceEEEEccCCCCCEEEEEeCC---------------------------CeEEEEEccCCCCCCCCceeEEeeCCCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHD---------------------------GTVALWKFVASDSSIDSRPLLCFSADTL 230 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~D---------------------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~ 230 (568)
.. + ..+.|+ |+|+.|+.++.+ ..|.+||+.++ ..+..+.. .
T Consensus 104 ~~-~-~~~~ws--pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~------~~~~~l~~-~- 171 (347)
T 2gop_A 104 KN-I-RSLEWN--EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE------EVIEEFEK-P- 171 (347)
T ss_dssp SE-E-EEEEEC--TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT------EEEEEEEE-E-
T ss_pred CC-c-cceeEC--CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC------eEEeeecC-C-
Confidence 12 6 889999 889988887642 57889998765 44234433 3
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCC--------C--EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC--
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHG--------G--LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-- 298 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d--------~--v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-- 298 (568)
.+..++|+|++ +++++..+ . |.++| ++ . ...+..+ ..+..+ +|+|++|+.++.+
T Consensus 172 ~~~~~~~spdg-------~~~~~~~~~~~~~~~~~~~l~~~d--~~-~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~ 237 (347)
T 2gop_A 172 RFSSGIWHRDK-------IVVNVPHREIIPQYFKFWDIYIWE--DG-K-EEKMFEK-VSFYAV--DSDGERILLYGKPEK 237 (347)
T ss_dssp TTCEEEEETTE-------EEEEEECCCSSCCSSCCEEEEEEE--TT-E-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred CcccccCCCCe-------EEEEEecccccccccccccEEEeC--CC-c-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence 78899999985 66555432 2 55556 33 2 3333333 445544 9999999888754
Q ss_pred ------CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE-EEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 299 ------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS-VQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 299 ------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~-l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
..|++|| . |+. ......|...+.. +.|+ ++ ++++++.++.++|| +.++.
T Consensus 238 ~~~~~~~~l~~~d--~--------~~~--------~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~ 293 (347)
T 2gop_A 238 KYMSEHNKLYIYD--G--------KEV--------MGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGE 293 (347)
T ss_dssp SCCCSSCEEEEEC--S--------SCE--------EESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSS
T ss_pred CCccccceEEEEC--C--------Cce--------EeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCc
Confidence 3577776 1 221 1222345667876 8999 88 99999999999999 86443
No 186
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.24 E-value=1.7e-10 Score=116.87 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=126.1
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+..+++++.. ++|++|+.++ +.||++...+.... .. .+. +.+. ....+.. |
T Consensus 40 ~nlLais~~~----------gll~a~~~~~-l~v~~~~~l~~~~~---~~--~~~------~~~~-----~~~~lp~-V- 90 (388)
T 1xip_A 40 LQNLDISNSK----------SLFVAASGSK-AVVGELQLLRDHIT---SD--STP------LTFK-----WEKEIPD-V- 90 (388)
T ss_dssp CBCEEEETTT----------TEEEEEETTE-EEEEEHHHHHHHHH---SS--SCC------CCCS-----EEEECTT-E-
T ss_pred ccEEEEcCCC----------CEEEEeCCCE-EEEEEhhHhhhhhc---cc--ccc------ccce-----EEeeCCC-e-
Confidence 4489999999 7999999875 66699765321000 00 000 0000 0023444 7
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
+.|+| ++.+|+++ .+|.|++||+.+. ........|...+.++.+.+. + +|++..|| |.+|
T Consensus 91 ~~l~f----d~~~L~v~-~~~~l~v~dv~sl------~~~~~~~~~~~~v~~i~~~~p-------~-~av~~~dG~L~v~ 151 (388)
T 1xip_A 91 IFVCF----HGDQVLVS-TRNALYSLDLEEL------SEFRTVTSFEKPVFQLKNVNN-------T-LVILNSVNDLSAL 151 (388)
T ss_dssp EEEEE----ETTEEEEE-ESSEEEEEESSST------TCEEEEEECSSCEEEEEECSS-------E-EEEEETTSEEEEE
T ss_pred eEEEE----CCCEEEEE-cCCcEEEEEchhh------hccCccceeecceeeEEecCC-------C-EEEEECCCCEEEE
Confidence 99998 57899998 8899999999865 334455567788888876654 3 77778888 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEE------e---
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV------N--- 332 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~------~--- 332 (568)
|+.+. .... +...|++++|+|+| ++.|..||+|++|+... +.. ....++ .
T Consensus 152 dl~~~-~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~--------~~~------~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 152 DLRTK-STKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN--------GEM------EKQFEFSLPSELEELP 210 (388)
T ss_dssp ETTTC-CEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEET--------TEE------EEEEEECCCHHHHTSC
T ss_pred EccCC-cccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC--------ccc------cccceecCCccccccc
Confidence 99976 3332 34579999999999 78899999999998743 110 001233 2
Q ss_pred cCCCCEEEEEEecCCCEEEEEe
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s 354 (568)
+|...|.+|+|.+++.+|++=+
T Consensus 211 ~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEEEc
Confidence 4788999999999988887643
No 187
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.20 E-value=2.3e-09 Score=119.57 Aligned_cols=227 Identities=11% Similarity=-0.058 Sum_probs=141.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCC-----CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGN-----GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~d-----g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+..++|||+| ++||.++.+ ..|++||+.+++.+... .
T Consensus 164 ~~~~~~~SPDG----------~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~---------------------------~ 206 (741)
T 1yr2_A 164 ALDAWAASDDG----------RLLAYSVQDGGSDWRTVKFVGVADGKPLADE---------------------------L 206 (741)
T ss_dssp EEEEEEECTTS----------SEEEEEEEETTCSEEEEEEEETTTCCEEEEE---------------------------E
T ss_pred EEEeEEECCCC----------CEEEEEEcCCCCceEEEEEEECCCCCCCCcc---------------------------C
Confidence 55689999999 788877654 35999999998765321 0
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCe--------------EEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGT--------------VALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPA 240 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~--------------I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~ 240 (568)
+...+ ..++|+ |+ +.|+.++.|+. |.+|++.+... .....+. .|...+..+.|+|+
T Consensus 207 ~~~~~-~~~~ws--pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~lv~~~~~~~~~~~~~~~SpD 278 (741)
T 1yr2_A 207 KWVKF-SGLAWL--GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQS----ADQPVFATPELPKRGHGASVSSD 278 (741)
T ss_dssp EEEES-CCCEES--TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEECTT
T ss_pred CCcee-ccEEEE--CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCch----hCEEEeccCCCCeEEEEEEECCC
Confidence 11112 568999 88 88888887664 88999875521 1223333 33346889999999
Q ss_pred CCCCCCCcEEEEEcC-----CC-EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEcccc
Q 008363 241 ESDSDSANVILTAGH-----GG-LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSLLKA 309 (568)
Q Consensus 241 ~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~~~~ 309 (568)
| ++|+..+. .. |++||+.++... ...+..+...+.... +|+|..|+..+. ++.|.+||+..
T Consensus 279 G------~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~- 350 (741)
T 1yr2_A 279 G------RWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG- 350 (741)
T ss_dssp S------CEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS-
T ss_pred C------CEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC-
Confidence 9 67665542 34 999999865222 444545555555553 489998888876 34599999843
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC-CCeeeccCCCCCcceeeeecccC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT-AKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
+.. .....+..+...+..+.|+ .+.++++...|+..+||.+. .+...+.............++++
T Consensus 351 -------~~~------~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~ 416 (741)
T 1yr2_A 351 -------STP------RFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRP 416 (741)
T ss_dssp -------SSC------EEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCB
T ss_pred -------Ccc------ccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCC
Confidence 110 1112344455567778887 56788888899988777654 23322222211122333345566
Q ss_pred CCCceEE
Q 008363 389 DESAITV 395 (568)
Q Consensus 389 ~~~~i~~ 395 (568)
++..+.+
T Consensus 417 d~~~l~~ 423 (741)
T 1yr2_A 417 GDRHAYL 423 (741)
T ss_dssp TCSCEEE
T ss_pred CCCEEEE
Confidence 6666553
No 188
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.19 E-value=3e-09 Score=106.57 Aligned_cols=180 Identities=10% Similarity=0.104 Sum_probs=121.7
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCC---------------------------CcEEEEECCCCceeeEEeccCCcc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGN---------------------------GSLEVWEVPLLRTMKAIYLSSMKE 155 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~d---------------------------g~V~iwd~~~~~~~~~l~~~~~~~ 155 (568)
+..++|+|++ +.|+.++.+ ..|.+||+.+++.+..+
T Consensus 106 ~~~~~wspdg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l------- 168 (347)
T 2gop_A 106 IRSLEWNEDS----------RKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF------- 168 (347)
T ss_dssp EEEEEECTTS----------SEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE-------
T ss_pred ccceeECCCC----------CEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-------
Confidence 5699999999 677777632 56888898887653333
Q ss_pred CCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC-------eEEEEEccCCCCCCCCceeEEeeCC
Q 008363 156 GTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG-------TVALWKFVASDSSIDSRPLLCFSAD 228 (568)
Q Consensus 156 ~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg-------~I~iwd~~~~~~~~~~~~~~~~~~h 228 (568)
.. . .+ ..++|+ |+| +++++..++ ...||.+.++ .. ..+..+
T Consensus 169 -------------------~~-~-~~-~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~------~~-~~l~~~ 216 (347)
T 2gop_A 169 -------------------EK-P-RF-SSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG------KE-EKMFEK 216 (347)
T ss_dssp -------------------EE-E-TT-CEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT------EE-EEEEEE
T ss_pred -------------------cC-C-Cc-ccccCC--CCe-EEEEEecccccccccccccEEEeCCC------ce-EEeccC
Confidence 22 2 45 889999 888 888776652 4556655532 22 333334
Q ss_pred CCCeeEEEEccCCCCCCCCcEEEEEcC--------CC-EEEEECCCCCcceeeeCCCCCCeEE-EEEcCCCCEEEEEeCC
Q 008363 229 TLPIRAVSWAPAESDSDSANVILTAGH--------GG-LKFWDIRDPFRPLWDIHPAPKFIYG-LDWLPDPGCVILSFDD 298 (568)
Q Consensus 229 ~~~V~~v~~~p~~~~~~~~~~las~s~--------d~-v~lwD~~~~~~~~~~~~~h~~~i~~-l~~sp~~~~l~s~~~d 298 (568)
..+..+ +|+| +.|+.++. .. |.+|| ++ ........|...+.. +.|+ ++ .+++++.+
T Consensus 217 -~~~~~~--spdg------~~l~~~~~~~~~~~~~~~~l~~~d--~~-~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~ 282 (347)
T 2gop_A 217 -VSFYAV--DSDG------ERILLYGKPEKKYMSEHNKLYIYD--GK-EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEE 282 (347)
T ss_dssp -ESEEEE--EECS------SCEEEEECCSSSCCCSSCEEEEEC--SS-CEEESSTTCCSEEEEEEEET-TE-EEEEEEET
T ss_pred -cceeeE--CCCC------CEEEEEEccccCCccccceEEEEC--CC-ceEeccccCCcccCCccEEc-Cc-EEEEEecC
Confidence 445544 8998 66665542 23 88888 33 334444556777886 9999 88 88888899
Q ss_pred CcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeE-EEEEcC
Q 008363 299 GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTV-HRFQLT 365 (568)
Q Consensus 299 g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v-~iwd~~ 365 (568)
+.++|| +.. |+. ..+..+...|.+++|+| .++++++.++.. .||.+.
T Consensus 283 ~~~~l~-~~~--------g~~---------~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 283 GSVNLY-IWD--------GEI---------KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp TEEEEE-EES--------SSE---------EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcEEEE-EcC--------Cce---------EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 999999 841 322 23444577899999999 677787777765 788775
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.15 E-value=4e-08 Score=95.72 Aligned_cols=199 Identities=5% Similarity=-0.032 Sum_probs=137.1
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.++++++.+++ .++++...++.|.+||.. +... .+.. ..+...+
T Consensus 16 ~~~~i~~d~~g----------~l~v~~~~~~~v~~~d~~-~~~~-~~~~------------------------~~~~~~~ 59 (299)
T 2z2n_A 16 GPYGITVSDKG----------KVWITQHKANMISCINLD-GKIT-EYPL------------------------PTPDAKV 59 (299)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTT-CCEE-EEEC------------------------SSTTCCE
T ss_pred CccceEECCCC----------CEEEEecCCCcEEEEcCC-CCeE-EecC------------------------CcccCce
Confidence 45699999998 677766668899999988 4432 2100 1122344
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.++++. ++|.++++...++.|..||.... .....+..+...+.+|++.+++ .++++...++ |.+
T Consensus 60 -~~i~~~--~~g~l~v~~~~~~~i~~~~~~g~------~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~ 124 (299)
T 2z2n_A 60 -MCLTIS--SDGEVWFTENAANKIGRITKKGI------IKEYTLPNPDSAPYGITEGPNG------DIWFTEMNGNRIGR 124 (299)
T ss_dssp -EEEEEC--TTSCEEEEETTTTEEEEECTTSC------EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEEE
T ss_pred -eeEEEC--CCCCEEEeCCCCCeEEEECCCCc------EEEEeCCCcCCCceeeEECCCC------CEEEEecCCceEEE
Confidence 888887 78888777777899999997621 1111222345678999999988 7888877766 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||. ++.........+...+..++++++++.+++...++.|..||. . |+.. . ..+..+...+.+
T Consensus 125 ~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--------g~~~------~-~~~~~~~~~~~~ 187 (299)
T 2z2n_A 125 ITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S--------GDIT------E-FKIPTPASGPVG 187 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T--------CCEE------E-EECSSTTCCEEE
T ss_pred ECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C--------CcEE------E-eeCCCCCCccee
Confidence 998 442322333334556899999999987776666789999987 2 3221 0 112234456889
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
+++++++.++++...++.|.+|+. ++..
T Consensus 188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~ 215 (299)
T 2z2n_A 188 ITKGNDDALWFVEIIGNKIGRITT-SGEI 215 (299)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred EEECCCCCEEEEccCCceEEEECC-CCcE
Confidence 999999988777777889999998 5544
No 190
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.15 E-value=3.6e-08 Score=96.79 Aligned_cols=238 Identities=9% Similarity=0.036 Sum_probs=148.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..-...|+|+.. .++++...++.|..||..++... .+ .....+
T Consensus 14 ~~Egp~w~~~~~---------~l~~~d~~~~~i~~~d~~~~~~~-~~---------------------------~~~~~~ 56 (297)
T 3g4e_A 14 CGESPVWEEVSN---------SLLFVDIPAKKVCRWDSFTKQVQ-RV---------------------------TMDAPV 56 (297)
T ss_dssp BEEEEEEETTTT---------EEEEEETTTTEEEEEETTTCCEE-EE---------------------------ECSSCE
T ss_pred cccCCeEECCCC---------EEEEEECCCCEEEEEECCCCcEE-EE---------------------------eCCCce
Confidence 445788999653 57777778899999999885542 21 112344
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC--CCCCeeEEEEccCCCCCCCCcEEEEEcC----
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA--DTLPIRAVSWAPAESDSDSANVILTAGH---- 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~--h~~~V~~v~~~p~~~~~~~~~~las~s~---- 255 (568)
.+++|+ ++|+++++ . ++.|.+||..++.. ..+..... ....+++++++|++ +++++...
T Consensus 57 -~~i~~~--~dG~l~v~-~-~~~l~~~d~~~g~~----~~~~~~~~~~~~~~~~di~~d~dG------~l~~~~~~~~~~ 121 (297)
T 3g4e_A 57 -SSVALR--QSGGYVAT-I-GTKFCALNWKEQSA----VVLATVDNDKKNNRFNDGKVDPAG------RYFAGTMAEETA 121 (297)
T ss_dssp -EEEEEB--TTSSEEEE-E-TTEEEEEETTTTEE----EEEEECCTTCSSEEEEEEEECTTS------CEEEEEEECCSB
T ss_pred -EEEEEC--CCCCEEEE-E-CCeEEEEECCCCcE----EEEEecCCCCCCCCCCCEEECCCC------CEEEecCCcccc
Confidence 889988 88885544 4 56899999876511 22222111 12347899999998 77766532
Q ss_pred ------CCEEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 ------GGLKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 ------d~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
..-.||.+..... +..+..+....+.++|+|+++.|+.+ +.++.|.+||+.. .+|.... ...+
T Consensus 122 ~~~~~~~~~~l~~~d~~g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~------~~G~~~~---~~~~ 191 (297)
T 3g4e_A 122 PAVLERHQGALYSLFPDHH-VKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDL------QTGQISN---RRSV 191 (297)
T ss_dssp TTBCCTTCEEEEEECTTSC-EEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECT------TTCCEEE---EEEE
T ss_pred cccccCCCcEEEEEECCCC-EEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccC------CCCcccC---cEEE
Confidence 1134554432212 22222223446899999999987665 4578999999742 1243210 0112
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc-CCCCceEEcccCCCC
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT-EDESAITVNTPLDNT 402 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~~~~~ 402 (568)
..+..+...+..++++++|.+.++...++.|.+||..++++....... .....|.++. +++..|.+.+.....
T Consensus 192 ~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p-~~~~t~~~f~g~d~~~L~vt~~~~~~ 265 (297)
T 3g4e_A 192 YKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP-VDKTTSCCFGGKNYSEMYVTCARDGM 265 (297)
T ss_dssp EECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS-SSBEEEEEEESGGGCEEEEEEBCTTC
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC-CCCceEEEEeCCCCCEEEEEcCCcCC
Confidence 233334466789999999988888888889999999877665543222 2334455666 677777776654443
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.13 E-value=1.2e-08 Score=101.87 Aligned_cols=205 Identities=5% Similarity=-0.063 Sum_probs=136.1
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..+.+++++++ .++++...++.|.+||..+++....+..... .++...
T Consensus 85 ~p~~i~~~~~g----------~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------~~~~~~- 132 (328)
T 3dsm_A 85 SPRYIHFLSDE----------KAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------DMESGS- 132 (328)
T ss_dssp SEEEEEEEETT----------EEEEEEBSCSEEEEEETTTTEEEEEEECTTC---------------------CTTTCB-
T ss_pred CCcEEEEeCCC----------eEEEEECCCCeEEEEECCCCeEEEEEEcCCc---------------------cccCCC-
Confidence 34589999988 5555555899999999999877655421100 111112
Q ss_pred ceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC----
Q 008363 182 PLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG---- 256 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d---- 256 (568)
|..+++. ++.++++.. .+++|.+||+.+. +.+..+... .....++++|++ ++++++..+
T Consensus 133 p~~i~~~---~~~lyv~~~~~~~~v~viD~~t~------~~~~~i~~g-~~p~~i~~~~dG------~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 133 TEQMVQY---GKYVYVNCWSYQNRILKIDTETD------KVVDELTIG-IQPTSLVMDKYN------KMWTITDGGYEGS 196 (328)
T ss_dssp CCCEEEE---TTEEEEEECTTCCEEEEEETTTT------EEEEEEECS-SCBCCCEECTTS------EEEEEBCCBCTTC
T ss_pred cceEEEE---CCEEEEEcCCCCCEEEEEECCCC------eEEEEEEcC-CCccceEEcCCC------CEEEEECCCccCC
Confidence 2566653 444444443 4899999999876 556665442 346789999998 777776654
Q ss_pred ------C-EEEEECCCCCcceeeeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 257 ------G-LKFWDIRDPFRPLWDIHPA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 257 ------~-v~lwD~~~~~~~~~~~~~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
+ |.+||..+. +....+... ......++|+|++++|+++.. .|.+||+.. ++... .
T Consensus 197 ~~~~~~~~v~~id~~t~-~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t--------~~~~~----~-- 259 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETF-TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEA--------DRVPV----R-- 259 (328)
T ss_dssp SSCBCCCEEEEEETTTT-EEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTC--------SSCCS----S--
T ss_pred ccccCCceEEEEECCCC-eEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCC--------Cceee----e--
Confidence 5 999999876 444444321 235799999999999988765 899999843 33211 0
Q ss_pred EEEecCCCCEEEEEEecC-CCEEEEE----eCCCeEEEEEcCCCeeecc
Q 008363 329 HLVNCSSFAIWSVQVSRL-TGMVAYC----SADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~-~~~l~s~----s~Dg~v~iwd~~~~~~~~~ 372 (568)
..+..+......++++|+ +.++++. ..++.|.+||.. +++...
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 011112456789999995 5666666 578999999997 554443
No 192
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.13 E-value=9e-09 Score=114.14 Aligned_cols=202 Identities=11% Similarity=-0.009 Sum_probs=136.4
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCc----------------EEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS----------------LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~----------------V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
..++|+|++ +.|+.++.++. |++|++.+++....+...
T Consensus 174 ~~~~wspDg----------~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~---------------- 227 (710)
T 2xdw_A 174 SCMAWTHDG----------KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAE---------------- 227 (710)
T ss_dssp CCEEECTTS----------SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEEC----------------
T ss_pred ceEEEEeCC----------CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEec----------------
Confidence 379999999 78888888776 999999886532111000
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccC------CCCCCCCceeEEeeCCCCCeeEEE
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVA------SDSSIDSRPLLCFSADTLPIRAVS 236 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~------~~~~~~~~~~~~~~~h~~~V~~v~ 236 (568)
...|...+ ..+.|+ |+|++|+.++. +..|.+||+.+ +. .....+..+...+.. .
T Consensus 228 ------~~~~~~~~-~~~~~S--pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-----~~~~~l~~~~~~~~~-~ 292 (710)
T 2xdw_A 228 ------FPDEPKWM-GGAELS--DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGI-----LKWVKLIDNFEGEYD-Y 292 (710)
T ss_dssp ------CTTCTTCE-EEEEEC--TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSS-----CCCEEEECSSSSCEE-E
T ss_pred ------cCCCCeEE-EEEEEc--CCCCEEEEEEEccCCCccEEEEEECcccccccCCc-----cceEEeeCCCCcEEE-E
Confidence 02344445 788999 89999888765 56899999975 31 134556666666655 4
Q ss_pred EccCCCCCCCCcEEE-EEcCC---C-EEEEECCCCCc-ceeeeCCCCC--CeEEEEEcCCCCEEEEEeCCCcEE--EEEc
Q 008363 237 WAPAESDSDSANVIL-TAGHG---G-LKFWDIRDPFR-PLWDIHPAPK--FIYGLDWLPDPGCVILSFDDGAMR--IVSL 306 (568)
Q Consensus 237 ~~p~~~~~~~~~~la-s~s~d---~-v~lwD~~~~~~-~~~~~~~h~~--~i~~l~~sp~~~~l~s~~~dg~I~--lwd~ 306 (568)
|++++ ..|+ .+..+ . |.+||+.++.. ....+..|.. .+..++|++++.++++...|+..+ +||+
T Consensus 293 ~s~dg------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~ 366 (710)
T 2xdw_A 293 VTNEG------TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDL 366 (710)
T ss_dssp EEEET------TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred EeccC------CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEEC
Confidence 78887 4444 44332 3 99999987632 2334444443 578899998777788888888654 4555
Q ss_pred cccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEE-e---CCCeEEEEEcCCCe
Q 008363 307 LKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-S---ADGTVHRFQLTAKA 368 (568)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s---~Dg~v~iwd~~~~~ 368 (568)
. +|+. +..+..+.+.|..+.++|++..|+.. + ..++|++||+.++.
T Consensus 367 ~--------~g~~--------~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 367 A--------TGAL--------LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp T--------TCCE--------EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred C--------CCCE--------EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2 2432 34666777888999999998655533 3 34789999998765
No 193
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.11 E-value=9.2e-08 Score=93.15 Aligned_cols=196 Identities=5% Similarity=-0.090 Sum_probs=134.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+.++++.+++ .++++...++.|..|+.. +.. ..+.. ......+
T Consensus 58 ~~~~i~~~~~g----------~l~v~~~~~~~i~~~~~~-g~~-~~~~~------------------------~~~~~~~ 101 (299)
T 2z2n_A 58 KVMCLTISSDG----------EVWFTENAANKIGRITKK-GII-KEYTL------------------------PNPDSAP 101 (299)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCE-EEEEC------------------------SSTTCCE
T ss_pred ceeeEEECCCC----------CEEEeCCCCCeEEEECCC-CcE-EEEeC------------------------CCcCCCc
Confidence 45599999998 677776668899999976 332 22100 1122233
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.++++. ++|.++++...++.|.+||. ++. ........+...+..+++.+++ .++++...++ |..
T Consensus 102 -~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~-----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~ 166 (299)
T 2z2n_A 102 -YGITEG--PNGDIWFTEMNGNRIGRITD-DGK-----IREYELPNKGSYPSFITLGSDN------ALWFTENQNNAIGR 166 (299)
T ss_dssp -EEEEEC--TTSCEEEEETTTTEEEEECT-TCC-----EEEEECSSTTCCEEEEEECTTS------CEEEEETTTTEEEE
T ss_pred -eeeEEC--CCCCEEEEecCCceEEEECC-CCC-----EEEecCCCCCCCCceEEEcCCC------CEEEEeCCCCEEEE
Confidence 788887 78888887777889999998 331 1112223345678999999998 7888777666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||. ++......+..+...+..+++++++..+++...++.|.+||. . ++.. ......+...+.+
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~--------g~~~-------~~~~~~~~~~~~~ 229 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-S--------GEIT-------EFKIPTPNARPHA 229 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T--------CCEE-------EEECSSTTCCEEE
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-C--------CcEE-------EEECCCCCCCcee
Confidence 998 442222223344556889999999986666666889999997 2 3221 0112234567899
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
++++++|.++++...++.|.+|+..
T Consensus 230 i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 230 ITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp EEECSTTCEEEEETTTTEEEEEETT
T ss_pred EEECCCCCEEEeccCCceEEEECCC
Confidence 9999999877777678999999983
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.11 E-value=1.7e-08 Score=100.71 Aligned_cols=209 Identities=7% Similarity=-0.076 Sum_probs=136.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
.++++...++.|.+||..+++.+..+.. ... |..++++ +++.++++...+
T Consensus 55 ~lyv~~~~~~~v~viD~~t~~~~~~i~~---------------------------~~~-p~~i~~~--~~g~lyv~~~~~ 104 (328)
T 3dsm_A 55 IGWIVVNNSHVIFAIDINTFKEVGRITG---------------------------FTS-PRYIHFL--SDEKAYVTQIWD 104 (328)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEEC---------------------------CSS-EEEEEEE--ETTEEEEEEBSC
T ss_pred EEEEEEcCCCEEEEEECcccEEEEEcCC---------------------------CCC-CcEEEEe--CCCeEEEEECCC
Confidence 4667777789999999999888776511 112 4788887 677444444489
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC-----CCeeEEEEccCCCCCCCCcEEEEEc-CCC-EEEEECCCCCcceeeeCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT-----LPIRAVSWAPAESDSDSANVILTAG-HGG-LKFWDIRDPFRPLWDIHP 275 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~-----~~V~~v~~~p~~~~~~~~~~las~s-~d~-v~lwD~~~~~~~~~~~~~ 275 (568)
+.|.+||+.+. +....+.... .....|++ ..+ .++++.. .++ |.+||+.+. ..+..+..
T Consensus 105 ~~v~~iD~~t~------~~~~~i~~g~~~~~~~~p~~i~~-~~~------~lyv~~~~~~~~v~viD~~t~-~~~~~i~~ 170 (328)
T 3dsm_A 105 YRIFIINPKTY------EITGYIECPDMDMESGSTEQMVQ-YGK------YVYVNCWSYQNRILKIDTETD-KVVDELTI 170 (328)
T ss_dssp SEEEEEETTTT------EEEEEEECTTCCTTTCBCCCEEE-ETT------EEEEEECTTCCEEEEEETTTT-EEEEEEEC
T ss_pred CeEEEEECCCC------eEEEEEEcCCccccCCCcceEEE-ECC------EEEEEcCCCCCEEEEEECCCC-eEEEEEEc
Confidence 99999999866 5555554333 14567777 444 5666654 366 999999987 55554432
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC----------CcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEe
Q 008363 276 APKFIYGLDWLPDPGCVILSFDD----------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVS 344 (568)
Q Consensus 276 h~~~i~~l~~sp~~~~l~s~~~d----------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~s 344 (568)
......++++|+|++++++..+ +.|.+||..+ ++.. ..+... ......++|+
T Consensus 171 -g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--------~~v~--------~~~~~~~g~~p~~la~~ 233 (328)
T 3dsm_A 171 -GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--------FTVE--------KQFKFKLGDWPSEVQLN 233 (328)
T ss_dssp -SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--------TEEE--------EEEECCTTCCCEEEEEC
T ss_pred -CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCC--------CeEE--------EEEecCCCCCceeEEEe
Confidence 2335688999999977766544 7899999843 3322 233322 2357899999
Q ss_pred cCCCEEEEEeCCCeEEEEEcCCCeeeccCC-C--CCcceeeeecccCCCCceEEc
Q 008363 345 RLTGMVAYCSADGTVHRFQLTAKAVEKDHS-R--NRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 345 p~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~-~--~~~~~~~~~s~~~~~~~i~~~ 396 (568)
|++++|.++.. .|.+||+.++++..... . ...|. ..++++++..+.+.
T Consensus 234 ~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~--gi~vdp~~g~lyva 284 (328)
T 3dsm_A 234 GTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYY--GLTVNPNNGEVYVA 284 (328)
T ss_dssp TTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEE--EEEECTTTCCEEEE
T ss_pred cCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceE--EEEEcCCCCeEEEE
Confidence 99988888765 89999998876542211 1 12222 33566655555544
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.11 E-value=3.4e-08 Score=105.78 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=137.8
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
.++++...+++|.++|..+++.+..+.. + .. +..+.++ |+|+++++++.|
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~-------------------------g--~~-p~~v~~S--pDGr~lyv~~~d 217 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDT-------------------------G--YA-VHISRLS--ASGRYLFVIGRD 217 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEEC-------------------------S--SC-EEEEEEC--TTSCEEEEEETT
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeC-------------------------C--CC-ccceEEC--CCCCEEEEEcCC
Confidence 5677777899999999999888766511 1 12 2678888 899999999999
Q ss_pred CeEEEEEcc--CCCCCCCCceeEEeeCCCCCeeEEEEc----cCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcceeeeC
Q 008363 203 GTVALWKFV--ASDSSIDSRPLLCFSADTLPIRAVSWA----PAESDSDSANVILTAGHG-G-LKFWDIRDPFRPLWDIH 274 (568)
Q Consensus 203 g~I~iwd~~--~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~ 274 (568)
+.|.+||+. +. +.+..+.... ....++|+ |+| +++++++.. + |.++|..+. .++..+.
T Consensus 218 g~V~viD~~~~t~------~~v~~i~~G~-~P~~ia~s~~~~pDG------k~l~v~n~~~~~v~ViD~~t~-~~~~~i~ 283 (567)
T 1qks_A 218 GKVNMIDLWMKEP------TTVAEIKIGS-EARSIETSKMEGWED------KYAIAGAYWPPQYVIMDGETL-EPKKIQS 283 (567)
T ss_dssp SEEEEEETTSSSC------CEEEEEECCS-EEEEEEECCSTTCTT------TEEEEEEEETTEEEEEETTTC-CEEEEEE
T ss_pred CeEEEEECCCCCC------cEeEEEecCC-CCceeEEccccCCCC------CEEEEEEccCCeEEEEECCCC-cEEEEEe
Confidence 999999995 43 5666665533 36799999 688 777777664 5 999998876 5554443
Q ss_pred C----------CCC-CeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363 275 P----------APK-FIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ 342 (568)
Q Consensus 275 ~----------h~~-~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~ 342 (568)
. |.. .+..+..++++..++.. ..+|.|.++|..... .+ .+..+ ........+.
T Consensus 284 ~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~--------~~------~v~~i-~~~~~~~d~~ 348 (567)
T 1qks_A 284 TRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN--------NL------KTTEI-SAERFLHDGG 348 (567)
T ss_dssp CCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS--------EE------EEEEE-ECCSSEEEEE
T ss_pred ccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc--------cc------eeeee-eccccccCce
Confidence 1 222 57788999987665554 557999999985421 10 11222 2334567889
Q ss_pred EecCCCEEEEEe-CCCeEEEEEcCCCeeeccC
Q 008363 343 VSRLTGMVAYCS-ADGTVHRFQLTAKAVEKDH 373 (568)
Q Consensus 343 ~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~~~~ 373 (568)
|+|++++|+++. .++.|.++|+.++++....
T Consensus 349 ~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 349 LDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 999999877665 6789999999998776543
No 196
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.09 E-value=1e-07 Score=101.99 Aligned_cols=198 Identities=15% Similarity=0.093 Sum_probs=134.2
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECC--CCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVP--LLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~--~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.++.+.|+|++ ++|++++.|+.|.+||+. +++.+..+.. + .
T Consensus 198 ~p~~v~~SpDG----------r~lyv~~~dg~V~viD~~~~t~~~v~~i~~-------------------------G-~- 240 (567)
T 1qks_A 198 AVHISRLSASG----------RYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-------------------------G-S- 240 (567)
T ss_dssp CEEEEEECTTS----------CEEEEEETTSEEEEEETTSSSCCEEEEEEC-------------------------C-S-
T ss_pred CccceEECCCC----------CEEEEEcCCCeEEEEECCCCCCcEeEEEec-------------------------C-C-
Confidence 34589999999 799999999999999996 6666555411 1 1
Q ss_pred ccceEEEEcc--CCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeC----------C-CCCeeEEEEccCCCCCC
Q 008363 180 SIPLTMEWST--SPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSA----------D-TLPIRAVSWAPAESDSD 245 (568)
Q Consensus 180 ~V~~~v~~s~--~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~----------h-~~~V~~v~~~p~~~~~~ 245 (568)
. |..++|++ .|+|+++++++. +++|.|+|..+. +++..+.. | ...+..+.+++++
T Consensus 241 ~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~------~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~---- 309 (567)
T 1qks_A 241 E-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL------EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR---- 309 (567)
T ss_dssp E-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC------CEEEEEECCEECTTTCCEESCCCEEEEEECSSS----
T ss_pred C-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCC------cEEEEEeccccccccccccCCCceEEEEEcCCC----
Confidence 1 37788872 137887776654 599999998765 56655432 1 2257888888886
Q ss_pred CCcEEEEEcCCC-EEEEECCCCCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccC
Q 008363 246 SANVILTAGHGG-LKFWDIRDPFRP-LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~~~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
+.++++...++ |.++|..+.... +..+ ........+.|+|++++++++. .++.|.++|+.+ ++.+
T Consensus 310 -~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t--------~kl~-- 377 (567)
T 1qks_A 310 -PEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE--------GKLV-- 377 (567)
T ss_dssp -SEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT--------TEEE--
T ss_pred -CEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCC--------CcEE--
Confidence 36677777777 999999865322 2222 2344567899999999998876 478999999943 4432
Q ss_pred ccccceEEEe-----cCCCCEEEEEEecCC-CEEEEEe-CCCeEEEEEcCC
Q 008363 323 TKQQGLHLVN-----CSSFAIWSVQVSRLT-GMVAYCS-ADGTVHRFQLTA 366 (568)
Q Consensus 323 ~~~~~l~~~~-----~h~~~V~~l~~sp~~-~~l~s~s-~Dg~v~iwd~~~ 366 (568)
..+. .|.+.-..+ ++|++ .+++++. .++.|.++|..+
T Consensus 378 ------~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 378 ------AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp ------EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred ------EEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 2222 243222222 68875 4445554 468999999976
No 197
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.09 E-value=3.5e-08 Score=97.12 Aligned_cols=231 Identities=7% Similarity=-0.058 Sum_probs=142.8
Q ss_pred eEEEEccCCCCcccccCcccEEEE-------EeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAV-------LLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las-------~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+++|++++ .++++ +..++.|.+||..+++..... .. ...+
T Consensus 21 ~~~~~~~~g----------~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~~---------------------~~~~ 68 (314)
T 1pjx_A 21 EGPVFDKNG----------DFYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-KP---------------------EVNG 68 (314)
T ss_dssp EEEEECTTS----------CEEEEETTCEETTEECCEEEEECTTTCCEEEEE-CC---------------------EETT
T ss_pred cCceECCCC----------CEEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-ec---------------------ccCC
Confidence 489999888 67777 577899999998876643221 00 0012
Q ss_pred CcCccceEEEEccCCC-CCEEEEEeCCCeEEEEEccCCCCCCCCceeEE-eeC----CCCCeeEEEEccCCCCCCCCcEE
Q 008363 177 GTQSIPLTMEWSTSPP-HDYLLAGCHDGTVALWKFVASDSSIDSRPLLC-FSA----DTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~-g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~-~~~----h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
+...+ .+++++ ++ |.+++ ++..+.|.+||.. + ..... ... +...+.++++++++ +++
T Consensus 69 ~~~~~-~~i~~~--~~~g~l~v-~~~~~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~~~i~~d~~g------~l~ 131 (314)
T 1pjx_A 69 YGGIP-AGCQCD--RDANQLFV-ADMRLGLLVVQTD-G------TFEEIAKKDSEGRRMQGCNDCAFDYEG------NLW 131 (314)
T ss_dssp EECCE-EEEEEC--SSSSEEEE-EETTTEEEEEETT-S------CEEECCSBCTTSCBCBCCCEEEECTTS------CEE
T ss_pred CCCCC-ceEEEe--cCCCcEEE-EECCCCEEEEeCC-C------CEEEEEeccCCCccccCCcCEEECCCC------CEE
Confidence 33444 889988 77 65444 4445578999987 5 22221 111 12358899999998 788
Q ss_pred EEEcCC---------------C-EEEEECCCCCcceeeeCCCCCCeEEEEEc----CCCCEEEEE-eCCCcEEEEEcccc
Q 008363 251 LTAGHG---------------G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWL----PDPGCVILS-FDDGAMRIVSLLKA 309 (568)
Q Consensus 251 as~s~d---------------~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~s----p~~~~l~s~-~~dg~I~lwd~~~~ 309 (568)
++...+ + |..||.. + .... +..+......++|+ |+++.|+.+ ..++.|.+||+..
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~- 207 (314)
T 1pjx_A 132 ITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G-QMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG- 207 (314)
T ss_dssp EEECBCBCTTSCCCBTTSSSCEEEEEECTT-S-CEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE-
T ss_pred EEecCcccccccccccccCCCCeEEEECCC-C-CEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCC-
Confidence 777654 4 7777765 3 2222 22223446889999 999777666 4578999999841
Q ss_pred ccCCCCCCCCccCccccceEEEecCC-CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSS-FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~-~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
.|+.. ....+..+..+. ..+..++++++|.++++...++.|.+||..++........ ......+..+++
T Consensus 208 ------~g~~~---~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~~i~~~~ 277 (314)
T 1pjx_A 208 ------PAKIE---NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPSNLHFKP 277 (314)
T ss_dssp ------TTEEE---EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEEEEEECT
T ss_pred ------CCccc---cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeC-CCCCceeEEECC
Confidence 12210 001122333443 5678899999999888888899999999975543322111 112233445566
Q ss_pred CCCceEEcc
Q 008363 389 DESAITVNT 397 (568)
Q Consensus 389 ~~~~i~~~~ 397 (568)
++..+.+.+
T Consensus 278 dg~~l~v~~ 286 (314)
T 1pjx_A 278 QTKTIFVTE 286 (314)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 776555543
No 198
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.04 E-value=3e-09 Score=107.79 Aligned_cols=150 Identities=11% Similarity=0.082 Sum_probs=110.1
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCC-----CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASD-----SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~-----~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.+ ..|+++ +...+|++|+.++ +.+|++..-. ......+.... .+.. |+.|+| ++ .+|+++
T Consensus 39 ~~-nlLais--~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~------~~L~v~- 103 (388)
T 1xip_A 39 SL-QNLDIS--NSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HG------DQVLVS- 103 (388)
T ss_dssp CC-BCEEEE--TTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ET------TEEEEE-
T ss_pred cc-cEEEEc--CCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CC------CEEEEE-
Confidence 34 778888 7788999999885 5669975331 00001232333 3566 999999 66 788888
Q ss_pred CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 255 HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
.++ |++||+++. ........|...+.++.+.+. .+++++.||.|.+||+.. +.. ..
T Consensus 104 ~~~~l~v~dv~sl-~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~--------~~~------------~~ 160 (388)
T 1xip_A 104 TRNALYSLDLEEL-SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRT--------KST------------KQ 160 (388)
T ss_dssp ESSEEEEEESSST-TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTT--------CCE------------EE
T ss_pred cCCcEEEEEchhh-hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccC--------Ccc------------cc
Confidence 666 999999977 344455566777888887754 388889999999999953 221 11
Q ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 334 SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 334 h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
+...|++++|||+| ++.|..||.+++|+.....+
T Consensus 161 ~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~ 194 (388)
T 1xip_A 161 LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM 194 (388)
T ss_dssp EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence 45689999999999 78899999999999887764
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.03 E-value=9e-08 Score=94.18 Aligned_cols=198 Identities=10% Similarity=0.045 Sum_probs=128.2
Q ss_pred eeeEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC-CcC
Q 008363 102 VAWDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG-GTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-h~~ 179 (568)
.+..++++++ + .+++ ++..+.|.+||.. ++......... .+ ...
T Consensus 72 ~~~~i~~~~~~g----------~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~----------------------~~~~~~ 117 (314)
T 1pjx_A 72 IPAGCQCDRDAN----------QLFV-ADMRLGLLVVQTD-GTFEEIAKKDS----------------------EGRRMQ 117 (314)
T ss_dssp CEEEEEECSSSS----------EEEE-EETTTEEEEEETT-SCEEECCSBCT----------------------TSCBCB
T ss_pred CCceEEEecCCC----------cEEE-EECCCCEEEEeCC-CCEEEEEeccC----------------------CCcccc
Confidence 3459999999 6 4444 4444579999988 55432100000 11 122
Q ss_pred ccceEEEEccCCCCCEEEEEeCC---------------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEc----cC
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHD---------------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWA----PA 240 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~D---------------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~----p~ 240 (568)
.+ .++++. ++|.++++...+ +.|..|+.. + .... +..+......++|+ ++
T Consensus 118 ~~-~~i~~d--~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g------~~~~-~~~~~~~~~~i~~~~~~d~d 186 (314)
T 1pjx_A 118 GC-NDCAFD--YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G------QMIQ-VDTAFQFPNGIAVRHMNDGR 186 (314)
T ss_dssp CC-CEEEEC--TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S------CEEE-EEEEESSEEEEEEEECTTSC
T ss_pred CC-cCEEEC--CCCCEEEEecCcccccccccccccCCCCeEEEECCC-C------CEEE-eccCCCCcceEEEecccCCC
Confidence 34 789988 788777776655 456666654 3 2222 22233457889999 98
Q ss_pred CCCCCCCcEE-EEEcCCC-EEEEECC-CCC----cceeeeCCCC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccC
Q 008363 241 ESDSDSANVI-LTAGHGG-LKFWDIR-DPF----RPLWDIHPAP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYD 312 (568)
Q Consensus 241 ~~~~~~~~~l-as~s~d~-v~lwD~~-~~~----~~~~~~~~h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~ 312 (568)
+ +.| ++...++ |.+||+. .+. .....+..+. ..+..++++++|+++++...++.|.+||..
T Consensus 187 g------~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~----- 255 (314)
T 1pjx_A 187 P------YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD----- 255 (314)
T ss_dssp E------EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT-----
T ss_pred C------CEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC-----
Confidence 7 544 5555556 9999986 331 1223343443 567899999999988887788999999984
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcCC
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLTA 366 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~~ 366 (568)
+|+.+ ..+..+...+.+++|++++..| ++...++.|..|++..
T Consensus 256 ---~g~~~--------~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 256 ---GGQPK--------MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ---CBSCS--------EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ---CCcEe--------EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 24332 3555666789999999999844 5555678999999864
No 200
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.03 E-value=4.8e-08 Score=100.61 Aligned_cols=196 Identities=10% Similarity=-0.014 Sum_probs=131.6
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.+.|+|+|++ .++++...++.|++||..++...... .. ... +
T Consensus 133 P~~la~d~~g----------~lyv~d~~~~~I~~id~~~g~~~~~~--------------------------~~-~~~-~ 174 (409)
T 3hrp_A 133 MWGIAAVGNN----------TVLAYQRDDPRVRLISVDDNKVTTVH--------------------------PG-FKG-G 174 (409)
T ss_dssp EEEEEECSTT----------EEEEEETTTTEEEEEETTTTEEEEEE--------------------------ET-CCB-C
T ss_pred ceEEEEeCCC----------CEEEEecCCCcEEEEECCCCEEEEee--------------------------cc-CCC-C
Confidence 4489999998 77777777899999999886554332 11 111 2
Q ss_pred eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEe---eC-CCCCeeEEEEcc-CCCCCCCCcEEEEEcC
Q 008363 183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCF---SA-DTLPIRAVSWAP-AESDSDSANVILTAGH 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~---~~-h~~~V~~v~~~p-~~~~~~~~~~las~s~ 255 (568)
. ++|+ ++++.|+++..++ .|.+|+.... .....+ .. +...+.+++++| ++ .+++ +..
T Consensus 175 ~-ia~~--~~g~~l~~~d~~~~~~I~~~d~~~~------~~~~~~g~~~~~~~~~p~~iav~p~~g------~lyv-~d~ 238 (409)
T 3hrp_A 175 K-PAVT--KDKQRVYSIGWEGTHTVYVYMKASG------WAPTRIGQLGSTFSGKIGAVALDETEE------WLYF-VDS 238 (409)
T ss_dssp B-CEEC--TTSSEEEEEBSSTTCEEEEEEGGGT------TCEEEEEECCTTSCSCCCBCEECTTSS------EEEE-ECT
T ss_pred c-eeEe--cCCCcEEEEecCCCceEEEEEcCCC------ceeEEeeeccchhcCCcEEEEEeCCCC------eEEE-EEC
Confidence 5 7888 8888998888866 7888887654 222222 12 456688999999 44 4555 656
Q ss_pred CC-EEEEECCCCCcceee---eCCCCCCe--EEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 256 GG-LKFWDIRDPFRPLWD---IHPAPKFI--YGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~---~~~h~~~i--~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
++ |+.||..+....+.. ..++...- ..++|+|++..|+ +-..++.|+.|+.. |..
T Consensus 239 ~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~---------g~~--------- 300 (409)
T 3hrp_A 239 NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPD---------GEC--------- 300 (409)
T ss_dssp TCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTT---------CCE---------
T ss_pred CCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecC---------CCE---------
Confidence 67 999999876322220 12222222 3999999644454 44568899999873 221
Q ss_pred EEEecCC---------------CCEEEEEEecCCCEEEEEe-CCCeEEEEEcCCCeee
Q 008363 329 HLVNCSS---------------FAIWSVQVSRLTGMVAYCS-ADGTVHRFQLTAKAVE 370 (568)
Q Consensus 329 ~~~~~h~---------------~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~~~ 370 (568)
..+.++. .....++|+++|.++++-+ .++.|+.|++.++.+.
T Consensus 301 ~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~ 358 (409)
T 3hrp_A 301 EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS 358 (409)
T ss_dssp EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE
T ss_pred EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE
Confidence 2333322 3478999999999888877 8899999997666543
No 201
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.02 E-value=1.4e-08 Score=102.90 Aligned_cols=205 Identities=9% Similarity=-0.030 Sum_probs=126.2
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeE-EeccCC-------------ccCCCCceEEEee
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKA-IYLSSM-------------KEGTDPRFVKLEP 166 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~-l~~~~~-------------~~~~~~~~v~~~~ 166 (568)
...++|+|++ ++|+++.. +++|.+||+.+++.+.. +..... +..+.+..+.++.
T Consensus 110 p~~i~~spdg----------~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 110 DGLFRQTTDG----------KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp GGGEEECTTS----------SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEE
T ss_pred cceEEECCCC----------CEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEE
Confidence 3489999999 78888763 68999999999887766 322110 1111122222222
Q ss_pred cce---ec------ccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC--------
Q 008363 167 VFR---CS------MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-------- 229 (568)
Q Consensus 167 ~~~---~~------~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-------- 229 (568)
... .. ..+..+... ..+.++ +++..++..+.++.|.++|+..... .....+....
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~--~~g~~~~~~~~~~~v~v~d~~~~~~----~~~~~~~~~~~~~~~~~~ 251 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDDP--IFIAPA--LDKDKAHFVSYYGNVYSADFSGDEV----KVDGPWSLLNDEDKAKNW 251 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTSC--BCSCCE--ECSSEEEEEBTTSEEEEEECSSSSC----EEEEEEESCCHHHHHTTC
T ss_pred ECCCCcEeeeccccceEcCCCCc--eEEEec--ccCCEEEEEeCCCeEEEEEecCCCc----eecccccccCcccccccc
Confidence 110 00 000111111 112223 5566777778899999999875421 2222221110
Q ss_pred --CCeeEEEEccCCCCCCCCcEEEEEc----------CCC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe
Q 008363 230 --LPIRAVSWAPAESDSDSANVILTAG----------HGG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 230 --~~V~~v~~~p~~~~~~~~~~las~s----------~d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
.....++|+|++. .++++.+ ... |.+||+.+. +.+..+..+. +..|+|+|||++|++++
T Consensus 252 ~p~g~~~~a~~~dg~-----~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~~--p~~ia~spdg~~l~v~n 323 (361)
T 2oiz_A 252 VPGGYNLVGLHRASG-----RMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGRD--ALSMTIDQQRNLMLTLD 323 (361)
T ss_dssp EECCSSCEEEETTTT-----EEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECTT--CCEEEEETTTTEEEEEC
T ss_pred ccCCeeEEEEecCCC-----eEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecCC--eeEEEECCCCCEEEEeC
Confidence 1122378999972 4444433 134 999999987 7777777666 89999999999999888
Q ss_pred CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363 297 DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 297 ~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~ 348 (568)
. ++|.+||+. ++++ +.+..+..+....+.++++|+|+
T Consensus 324 ~-~~v~v~D~~--------t~~l------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 324 G-GNVNVYDIS--------QPEP------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp S-SCEEEEECS--------SSSC------EEEEEETTSCSSEEEEEECCCSC
T ss_pred C-CeEEEEECC--------CCcc------eeeEEeccCCCCcEEEEecCCCC
Confidence 6 999999994 3511 22356556667778999999975
No 202
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.02 E-value=5.5e-09 Score=115.59 Aligned_cols=201 Identities=10% Similarity=0.003 Sum_probs=132.4
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCc-------------EEEEECCCCceeeEEeccCCccCCCCceEEEeeccee
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-------------LEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRC 170 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-------------V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 170 (568)
..++|+|++ +.|+.++.|.. |++|++.++.....+..
T Consensus 171 ~~~~wspDg----------~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~-------------------- 220 (695)
T 2bkl_A 171 ATPKWTPDS----------KGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH-------------------- 220 (695)
T ss_dssp CCCEECTTS----------SEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE--------------------
T ss_pred cceEEecCC----------CEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE--------------------
Confidence 378999999 78999888776 99999998653211100
Q ss_pred cccccCCcCccceEEEEccCCCCCEEEEEeCCC----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCC
Q 008363 171 SMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDS 246 (568)
Q Consensus 171 ~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~ 246 (568)
....|...+ ..+.|+ |+|++|+.++.++ .|.+|+..++ ....+..+...+....| +++
T Consensus 221 --~~~~~~~~~-~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~-~~g----- 282 (695)
T 2bkl_A 221 --ERTGDPTTF-LQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEK-------DFRLLVKGVGAKYEVHA-WKD----- 282 (695)
T ss_dssp --CCCCCTTCE-EEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCS-------SCEEEEECSSCCEEEEE-ETT-----
T ss_pred --ecCCCCEEE-EEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCC-------ceEEeecCCCceEEEEe-cCC-----
Confidence 003444556 788999 8999888877666 5666654322 23444455666667766 676
Q ss_pred CcEEEEEcC---CC-EEEEECCCCCc--ceeeeCCC-CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCC
Q 008363 247 ANVILTAGH---GG-LKFWDIRDPFR--PLWDIHPA-PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 247 ~~~las~s~---d~-v~lwD~~~~~~--~~~~~~~h-~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
.+++++.. ++ |.+||+.++.. ....+..+ ...+..++|+ ++..+++...|+..+||.+.. .|..
T Consensus 283 -~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-------~g~~ 353 (695)
T 2bkl_A 283 -RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATL-------KGKP 353 (695)
T ss_dssp -EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEET-------TCCE
T ss_pred -cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-------CCCe
Confidence 55555542 35 99999987632 12223333 4457888998 667777788899999887642 2322
Q ss_pred ccCccccceEEEecC-CCCEEEEEEecCCCEEEEEe----CCCeEEEEEcCCCee
Q 008363 320 FAGTKQQGLHLVNCS-SFAIWSVQVSRLTGMVAYCS----ADGTVHRFQLTAKAV 369 (568)
Q Consensus 320 ~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~~l~s~s----~Dg~v~iwd~~~~~~ 369 (568)
+..+..+ .+.|..+.++|++..|+... ..++|++||+.++..
T Consensus 354 --------~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 354 --------VRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp --------EEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred --------eEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2344444 56778888999987666332 347899999987654
No 203
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.02 E-value=9.8e-09 Score=99.81 Aligned_cols=170 Identities=12% Similarity=0.150 Sum_probs=123.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL 270 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~ 270 (568)
++++|++++.|+.|.+||..++ +.+..+..+. ..+.++.+.|+| ++|+ +..++|..||. ++ +.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG------~~~w~~~~~~~~~~~~~~~~pdG------~ilv-s~~~~V~~~d~-~G-~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK------EIVWEYPLEKGWECNSVAATKAG------EILF-SYSKGAKMITR-DG-REL 68 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT------EEEEEEECCTTCCCCEEEECTTS------CEEE-ECBSEEEEECT-TS-CEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC------eEEEEeCCCccCCCcCeEECCCC------CEEE-eCCCCEEEECC-CC-CEE
Confidence 4579999999999999998877 7888887776 478999999999 8888 33334999999 56 677
Q ss_pred eeeCCC-CCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEe------cCCCCEEEEE
Q 008363 271 WDIHPA-PKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CSSFAIWSVQ 342 (568)
Q Consensus 271 ~~~~~h-~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h~~~V~~l~ 342 (568)
+.+..+ ...+.++.+.|+|++|++.+. ++.|..+|. +|+.++ .+. .+......++
T Consensus 69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~---------~Gk~l~--------~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM---------KGEVLS--------KTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT---------TSCEEE--------EEEECCSCSSGGGSCSCCE
T ss_pred EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC---------CCCEEE--------EEeccCCCCcccccccCce
Confidence 777654 346889999999999999887 777777765 365442 222 1222445667
Q ss_pred EecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceEEc
Q 008363 343 VSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAITVN 396 (568)
Q Consensus 343 ~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~ 396 (568)
+.++|.+|++...++.|..||.. ++..-.......++. .....++..+...
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~--~~~~~~g~~~v~~ 182 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFS--SAFLDNGDCLVAC 182 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCE--EEECTTSCEEEEC
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccc--eeEcCCCCEEEEe
Confidence 89999999999999999999998 665544333323332 2334555555544
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.00 E-value=3.7e-08 Score=108.82 Aligned_cols=230 Identities=12% Similarity=0.084 Sum_probs=141.2
Q ss_pred ccCCceeeEEEEccCCCCcccccCcccEEEEEe-----CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceec
Q 008363 97 AHNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLL-----GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCS 171 (568)
Q Consensus 97 ~h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s-----~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~ 171 (568)
+|.. .+..++|||++ ++||.+. ....|+|||+.+++.+... +
T Consensus 126 ~~~~-~l~~~~~SpDg----------~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~---------------~------- 172 (693)
T 3iuj_A 126 DGTT-ALDQLSFSRDG----------RILAYSLSLAGSDWREIHLMDVESKQPLETP---------------L------- 172 (693)
T ss_dssp TSCC-EEEEEEECTTS----------SEEEEEEECSSCCEEEEEEEETTTCSEEEEE---------------E-------
T ss_pred CCcE-EEEEEEECCCC----------CEEEEEEecCCCceEEEEEEECCCCCCCccc---------------c-------
Confidence 3444 56689999999 6777433 2357999999998765321 0
Q ss_pred ccccCCcCccceEEEEccCCCCCEEEEEeCCCe-------------EEEEEccCCCCCCCCceeEEe--eC-CCCCeeEE
Q 008363 172 MLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGT-------------VALWKFVASDSSIDSRPLLCF--SA-DTLPIRAV 235 (568)
Q Consensus 172 ~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~-------------I~iwd~~~~~~~~~~~~~~~~--~~-h~~~V~~v 235 (568)
.+ ... ..++|+ ||+.|+.++.+.. |.+|++.+... .....+ .. |...+..+
T Consensus 173 ---~~--~k~-~~~~Ws---Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~----~~~~v~~~~~~~~~~~~~~ 239 (693)
T 3iuj_A 173 ---KD--VKF-SGISWL---GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQE----DDRLVFGAIPAQHHRYVGA 239 (693)
T ss_dssp ---EE--EES-CCCEEE---TTTEEEEEESSCCC-------CCCCEEEEEETTSCGG----GCEEEESCSGGGCCSEEEE
T ss_pred ---CC--cee-ccEEEe---CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcc----cceEEEecCCCCCeEEEEE
Confidence 11 011 467888 6778888887743 99999876521 223333 23 44567889
Q ss_pred EEccCCCCCCCCcEE-EEEcC---CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC----CCcEEEEEc
Q 008363 236 SWAPAESDSDSANVI-LTAGH---GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD----DGAMRIVSL 306 (568)
Q Consensus 236 ~~~p~~~~~~~~~~l-as~s~---d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----dg~I~lwd~ 306 (568)
.|+|++ ++| ++.+. .. |++||+.++......+..+....... |++++..|+..+. .+.|..+|+
T Consensus 240 ~~SpDg------~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~ 312 (693)
T 3iuj_A 240 TVTEDD------RFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDA 312 (693)
T ss_dssp EECTTS------CEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EEcCCC------CEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeC
Confidence 999999 555 44432 35 99999987644555565666656555 6677776665544 357888998
Q ss_pred cccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC---eEEEEEcCCCeeeccCCCCCcceeee
Q 008363 307 LKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG---TVHRFQLTAKAVEKDHSRNRPMHFLC 383 (568)
Q Consensus 307 ~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg---~v~iwd~~~~~~~~~~~~~~~~~~~~ 383 (568)
.. +.. ..+..+..|...+. .|++++.+|+....++ .|++|++..+....- ..........
T Consensus 313 ~~--------~~~------~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l-~~p~~~~~~~ 375 (693)
T 3iuj_A 313 AN--------PGP------AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVREV-ALPGLGSVSG 375 (693)
T ss_dssp TS--------CCG------GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEEEE-CCSSSSEEEE
T ss_pred CC--------CCc------cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeEEe-ecCCCceEEe
Confidence 43 221 11245566666655 8999998777766544 689999875543322 1111122222
Q ss_pred ecccCCCCceEEc
Q 008363 384 GSVTEDESAITVN 396 (568)
Q Consensus 384 ~s~~~~~~~i~~~ 396 (568)
.+.++++..+.+.
T Consensus 376 ~~~~~d~~~l~~~ 388 (693)
T 3iuj_A 376 FNGKHDDPALYFG 388 (693)
T ss_dssp CCCCTTCSCEEEE
T ss_pred eecCCCCCEEEEE
Confidence 3445566665543
No 205
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.00 E-value=4.4e-07 Score=88.26 Aligned_cols=195 Identities=6% Similarity=-0.073 Sum_probs=133.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..+++++.+++ .++++...++.|.+|+.. ++... +.. ..+...+
T Consensus 21 ~p~~i~~d~~g----------~l~v~~~~~~~v~~~~~~-~~~~~-~~~------------------------~~~~~~~ 64 (300)
T 2qc5_A 21 GPYGITSSEDG----------KVWFTQHKANKISSLDQS-GRIKE-FEV------------------------PTPDAKV 64 (300)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEEE-EEC------------------------SSTTCCE
T ss_pred CcceeeECCCC----------CEEEEcCCCCeEEEECCC-CceEE-EEC------------------------CCCCCcc
Confidence 45589999998 677776678999999987 44332 100 1122333
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
.++++. ++|.++++...++.|..||.. +. .....+......+.++++.+++ .++++...++ |..
T Consensus 65 -~~i~~~--~~g~l~v~~~~~~~v~~~d~~-g~-----~~~~~~~~~~~~~~~i~~~~~g------~l~v~~~~~~~i~~ 129 (300)
T 2qc5_A 65 -MCLIVS--SLGDIWFTENGANKIGKLSKK-GG-----FTEYPLPQPDSGPYGITEGLNG------DIWFTQLNGDRIGK 129 (300)
T ss_dssp -EEEEEC--TTSCEEEEETTTTEEEEECTT-SC-----EEEEECSSTTCCEEEEEECSTT------CEEEEETTTTEEEE
T ss_pred -eeEEEC--CCCCEEEEecCCCeEEEECCC-CC-----eEEecCCCCCCCCccceECCCC------CEEEEccCCCeEEE
Confidence 788877 788877777768899999977 41 1112222244678999999988 7888877666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
||.. +......+......+..+++.++++..++...++.|..||.. |+.. ......+...+.+
T Consensus 130 ~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---------g~~~-------~~~~~~~~~~~~~ 192 (300)
T 2qc5_A 130 LTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNT---------GKLE-------EYPLPTNAAAPVG 192 (300)
T ss_dssp ECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------CCEE-------EEECSSTTCCEEE
T ss_pred ECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCC---------CcEE-------EeeCCCCCCCcce
Confidence 9987 422223333345568999999999966665557889999872 3221 0112234456889
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEc
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+++++++.++++....+.|.+|+.
T Consensus 193 i~~d~~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 193 ITSGNDGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT
T ss_pred EEECCCCCEEEEccCCCEEEEEcC
Confidence 999999987777777788999998
No 206
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.98 E-value=4.3e-07 Score=88.34 Aligned_cols=195 Identities=4% Similarity=-0.106 Sum_probs=133.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+..+++.+++ .++++...++.|.+||.. ++.. .+.. ......+
T Consensus 63 ~~~~i~~~~~g----------~l~v~~~~~~~v~~~d~~-g~~~-~~~~------------------------~~~~~~~ 106 (300)
T 2qc5_A 63 KVMCLIVSSLG----------DIWFTENGANKIGKLSKK-GGFT-EYPL------------------------PQPDSGP 106 (300)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEE-EEEC------------------------SSTTCCE
T ss_pred cceeEEECCCC----------CEEEEecCCCeEEEECCC-CCeE-EecC------------------------CCCCCCC
Confidence 45589999988 677766667889999987 4432 2110 1112333
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
.++++. ++|.++++...++.|..||.. + ... ..+......+.++++.+++ +++++...++ |.
T Consensus 107 -~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g------~~~~~~~~~~~~~~~~i~~d~~g------~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 107 -YGITEG--LNGDIWFTQLNGDRIGKLTAD-G------TIYEYDLPNKGSYPAFITLGSDN------ALWFTENQNNSIG 170 (300)
T ss_dssp -EEEEEC--STTCEEEEETTTTEEEEECTT-S------CEEEEECSSTTCCEEEEEECTTS------SEEEEETTTTEEE
T ss_pred -ccceEC--CCCCEEEEccCCCeEEEECCC-C------CEEEccCCCCCCCceeEEECCCC------CEEEEecCCCeEE
Confidence 788877 788887777778899999876 3 222 2233345678999999998 7777777666 99
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
.||. ++.........+...+..+++++++...++....+.|.+||.. |+.. ...+..+...+.
T Consensus 171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~---------g~~~-------~~~~~~~~~~~~ 233 (300)
T 2qc5_A 171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT---------GEIS-------EYDIPTPNARPH 233 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------CCEE-------EEECSSTTCCEE
T ss_pred EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC---------CcEE-------EEECCCCCCCce
Confidence 9998 3422222233344568999999999866666667789999872 3221 011223456789
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 340 SVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
+++++++|.++++...++.|..|+..
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECTT
T ss_pred EEEECCCCCEEEeccCCCeEEEECCC
Confidence 99999999877777677999999984
No 207
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.94 E-value=8.4e-07 Score=88.27 Aligned_cols=230 Identities=10% Similarity=-0.033 Sum_probs=140.4
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.....|+|++. .++++...++.|.+||..+++.. .+ .....+
T Consensus 51 ~egp~~~~~~~---------~l~~~d~~~~~i~~~d~~~~~~~-~~---------------------------~~~~~v- 92 (326)
T 2ghs_A 51 GEGPTFDPASG---------TAWWFNILERELHELHLASGRKT-VH---------------------------ALPFMG- 92 (326)
T ss_dssp EEEEEEETTTT---------EEEEEEGGGTEEEEEETTTTEEE-EE---------------------------ECSSCE-
T ss_pred CcCCeEeCCCC---------EEEEEECCCCEEEEEECCCCcEE-EE---------------------------ECCCcc-
Confidence 34788999863 57777777899999999875432 11 012345
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---C-CCCeeEEEEccCCCCCCCCcEEEEEcC---
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---D-TLPIRAVSWAPAESDSDSANVILTAGH--- 255 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h-~~~V~~v~~~p~~~~~~~~~~las~s~--- 255 (568)
.++.|. ++|+++++ +.+ .|.+||..++ ........ + ...+.+++++|++ .++++...
T Consensus 93 ~~i~~~--~dg~l~v~-~~~-gl~~~d~~~g------~~~~~~~~~~~~~~~~~~~i~~d~~G------~l~v~~~~~~~ 156 (326)
T 2ghs_A 93 SALAKI--SDSKQLIA-SDD-GLFLRDTATG------VLTLHAELESDLPGNRSNDGRMHPSG------ALWIGTMGRKA 156 (326)
T ss_dssp EEEEEE--ETTEEEEE-ETT-EEEEEETTTC------CEEEEECSSTTCTTEEEEEEEECTTS------CEEEEEEETTC
T ss_pred eEEEEe--CCCeEEEE-ECC-CEEEEECCCC------cEEEEeeCCCCCCCCCCCCEEECCCC------CEEEEeCCCcC
Confidence 888988 77766654 444 4999998765 22221111 1 2358899999998 67766542
Q ss_pred ---CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCC-CCccCccccceE
Q 008363 256 ---GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATG-KPFAGTKQQGLH 329 (568)
Q Consensus 256 ---d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g-~~~~~~~~~~l~ 329 (568)
.+ |..+| ++ .. ..+..+....+.++|+|+++.|+.+. .++.|.+||+.. .+| .... ...+.
T Consensus 157 ~~~~~~l~~~~--~g-~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~------~~Gl~~~~---~~~~~ 223 (326)
T 2ghs_A 157 ETGAGSIYHVA--KG-KV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA------RTGLPTGK---AEVFI 223 (326)
T ss_dssp CTTCEEEEEEE--TT-EE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT------TTCCBSSC---CEEEE
T ss_pred CCCceEEEEEe--CC-cE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEccc------ccCCcccC---ceEEE
Confidence 13 66666 33 22 22222233468999999999876664 478999999841 023 2210 01122
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeeccc-CCCCceEEcccCCC
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVT-EDESAITVNTPLDN 401 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~-~~~~~i~~~~~~~~ 401 (568)
.+......+..++++++|.+.++...++.|.+|+.. ++....... ......+.++. +++..+.+.+....
T Consensus 224 ~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 224 DSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEV-PGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp ECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred ECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEEC-CCCCcEEEEEecCCCCEEEEEecCCC
Confidence 233344567889999999888877778899999984 333322111 12223445565 66677766554443
No 208
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.94 E-value=1.1e-07 Score=95.33 Aligned_cols=218 Identities=7% Similarity=-0.050 Sum_probs=132.1
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEe--CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLL--GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s--~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
....|+++|++ +++++.. .++.++||.+.++. +..+ |... ....+|..
T Consensus 18 ~p~~va~~~~g----------~~~v~~~~~~~~~~~l~~~~~g~-~~~~-----------------p~~~--~~~~~~~~ 67 (343)
T 2qe8_A 18 APGNITLTPDG----------RLFLSLHQFYQPEMQVAELTQDG-LIPF-----------------PPQS--GNAIITFD 67 (343)
T ss_dssp CEEEEEECTTS----------CEEEEECGGGCCSCSEEEEETTE-EEES-----------------CCCC--SSCCCCCS
T ss_pred CcceEEECCCC----------CEEEEeCCCCCCceEEEEECCCC-eecC-----------------CCcc--cCccccee
Confidence 44599999999 6777754 23435666655433 2111 0000 01134555
Q ss_pred ccceEEEEccCCCCCEEEEEeC-----CCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCCCc
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCH-----DGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~~~ 248 (568)
.+ ..|++. ++++++++-.. ++.|.+||+.++ +.+..+.. +...+..|++++++ ..
T Consensus 68 ~p-~gv~~d--~~g~L~v~D~g~~~~~~~~i~~~d~~tg------~~~~~~~~~~~~~~~~~~~~~v~vd~~~-----g~ 133 (343)
T 2qe8_A 68 TV-LGIKSD--GNGIVWMLDNGNQSKSVPKLVAWDTLNN------QLSRVIYLPPPITLSNSFVNDLAVDLIH-----NF 133 (343)
T ss_dssp CE-EEEEEC--SSSEEEEEECHHHHTSCCEEEEEETTTT------EEEEEEECCTTTSCTTCCCCEEEEETTT-----TE
T ss_pred Ee-eEEEEc--CCCcEEEEcCCCCcCCCCeEEEEECCCC------eEEEEEECChhhcccccccceEEEecCC-----CE
Confidence 65 899988 77766665443 578999999866 55555432 23457899999864 15
Q ss_pred EEEEEc---CCC-EEEEECCCCCcceeeeCCC-----------------------------CCCeEEEEEcCCCCEEEEE
Q 008363 249 VILTAG---HGG-LKFWDIRDPFRPLWDIHPA-----------------------------PKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 249 ~las~s---~d~-v~lwD~~~~~~~~~~~~~h-----------------------------~~~i~~l~~sp~~~~l~s~ 295 (568)
++++.. .+. |.+||+.++ .....+.+| ...++.|+|+|++++|+.+
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g-~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTG-LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLS 212 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTC-CEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEE
T ss_pred EEEEcCccCCCCeEEEEECCCC-CEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEE
Confidence 556655 455 999999865 333333221 1236889999999999988
Q ss_pred eCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 296 FDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 296 ~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
..++ .|+.++...........++.. ..+ ...++......++++++|.++++...++.|.+||..++.+.
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~-~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELG-----SKI-ERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHH-----TTC-EEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhh-----cce-EecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 7655 555555422110000000000 011 12234445567899999999999999999999999555443
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.91 E-value=8.3e-07 Score=90.08 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=125.2
Q ss_pred EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.++++|++ ++|+++. .++.|.+||..+.+.+..+.-.. +. .
T Consensus 70 ~i~~spDg----------~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~-------------~~-~----- 120 (373)
T 2mad_H 70 NPVAAHSG----------SEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPD-------------AP-R----- 120 (373)
T ss_pred CeEECCCC----------CEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCC-------------cc-c-----
Confidence 79999999 7888775 36789999999877766542110 00 0
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEE-eeCCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLC-FSADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~-~~~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
..+... |..+.|+ |+|++|++++. ++.|.++| .++ +.+.. +.. .. ++.+.|.+ +..++
T Consensus 121 ~~~g~~-p~~~~~s--pDG~~l~v~n~~~~~~v~viD-~t~------~~~~~~i~~-~~---~~~~~~~~-----~~~~~ 181 (373)
T 2mad_H 121 FDVGPY-SWMNANT--PNNADLLFFQFAAGPAVGLVV-QGG------SSDDQLLSS-PT---CYHIHPGA-----PSTFY 181 (373)
T ss_pred cccCCC-ccceEEC--CCCCEEEEEecCCCCeEEEEE-CCC------CEEeEEcCC-Cc---eEEEEeCC-----CceEE
Confidence 000111 3678888 99999998874 57899999 866 44444 321 11 12223332 12222
Q ss_pred EEcCCC------------------------------------------------EEEEECCCCCcc-eeeeCC-------
Q 008363 252 TAGHGG------------------------------------------------LKFWDIRDPFRP-LWDIHP------- 275 (568)
Q Consensus 252 s~s~d~------------------------------------------------v~lwD~~~~~~~-~~~~~~------- 275 (568)
+.+.|+ |.+.|+...... +..+.-
T Consensus 182 ~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~ 261 (373)
T 2mad_H 182 LLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKA 261 (373)
T ss_pred EEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccc
Confidence 333333 444444322100 011100
Q ss_pred ---CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEE
Q 008363 276 ---APKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQ 342 (568)
Q Consensus 276 ---h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~ 342 (568)
.......+.++|++..|+++.. .+.|.++|+.+ ++. +..+.. ....++++
T Consensus 262 ~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--------~~v--------v~~i~~-g~~p~~i~ 324 (373)
T 2mad_H 262 DTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--------GQT--------SSQISL-GHDVDAIS 324 (373)
T ss_pred cceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--------CEE--------EEEEEC-CCCcCeEE
Confidence 0122334778888888877643 35788999843 433 245542 23578999
Q ss_pred EecCCC-EEEEEe-CCCeEEEEEcCCCeeecc-CCCCCcceee
Q 008363 343 VSRLTG-MVAYCS-ADGTVHRFQLTAKAVEKD-HSRNRPMHFL 382 (568)
Q Consensus 343 ~sp~~~-~l~s~s-~Dg~v~iwd~~~~~~~~~-~~~~~~~~~~ 382 (568)
|+|+|+ +++++. .++.|.+||+.+.+..+. ..-...|+.+
T Consensus 325 ~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~~vG~~P~~~ 367 (373)
T 2mad_H 325 VAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVL 367 (373)
T ss_pred ECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeecCCCCCCcEE
Confidence 999998 777777 589999999998887765 3333444443
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.85 E-value=7.1e-07 Score=87.46 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=119.4
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+.+++|+|++ ++++ +. ++.|.+||..+++......... ......+
T Consensus 55 ~~~~i~~~~dG----------~l~v-~~-~~~l~~~d~~~g~~~~~~~~~~----------------------~~~~~~~ 100 (297)
T 3g4e_A 55 PVSSVALRQSG----------GYVA-TI-GTKFCALNWKEQSAVVLATVDN----------------------DKKNNRF 100 (297)
T ss_dssp CEEEEEEBTTS----------SEEE-EE-TTEEEEEETTTTEEEEEEECCT----------------------TCSSEEE
T ss_pred ceEEEEECCCC----------CEEE-EE-CCeEEEEECCCCcEEEEEecCC----------------------CCCCCCC
Confidence 45599999999 6544 44 5679999998765432210000 0011223
Q ss_pred ceEEEEccCCCCCEEEEEeCC---------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-E
Q 008363 182 PLTMEWSTSPPHDYLLAGCHD---------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-L 251 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~D---------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-a 251 (568)
..+.+. ++|+++++...+ ....||.+... .... .+..+....+.++|+|++ +.| +
T Consensus 101 -~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-----g~~~-~~~~~~~~pngi~~spdg------~~lyv 165 (297)
T 3g4e_A 101 -NDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPD-----HHVK-KYFDQVDISNGLDWSLDH------KIFYY 165 (297)
T ss_dssp -EEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-----SCEE-EEEEEESBEEEEEECTTS------CEEEE
T ss_pred -CCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECC-----CCEE-EEeeccccccceEEcCCC------CEEEE
Confidence 778887 888866654322 33466666533 1222 222333457899999998 544 5
Q ss_pred EEcCCC-EEEEECC--CCC----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 252 TAGHGG-LKFWDIR--DPF----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 252 s~s~d~-v~lwD~~--~~~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
+.+.++ |.+||+. ++. +.+..+..+......++++++|++.++....+.|..||.. +|+.+
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~--------tG~~~---- 233 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV--------TGKRL---- 233 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT--------TCCEE----
T ss_pred ecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC--------CceEE----
Confidence 556566 9999973 332 1122333334567899999999877777778889999983 36443
Q ss_pred ccceEEEecCCCCEEEEEEe-cCCCEEEEEeC
Q 008363 325 QQGLHLVNCSSFAIWSVQVS-RLTGMVAYCSA 355 (568)
Q Consensus 325 ~~~l~~~~~h~~~V~~l~~s-p~~~~l~s~s~ 355 (568)
..+..+...+++++|. |+++.|+.++.
T Consensus 234 ----~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 234 ----QTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ----EEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ----EEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 5666676789999998 88776655553
No 211
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.82 E-value=6.8e-07 Score=87.92 Aligned_cols=223 Identities=8% Similarity=-0.046 Sum_probs=133.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
......|+|++. .++++...++.|..|+. ++. ...+ ..+...+
T Consensus 46 ~~egp~~~~~g~---------~l~~~d~~~~~i~~~~~-~g~-~~~~--------------------------~~~~~~~ 88 (305)
T 3dr2_A 46 WSEGPAWWEAQR---------TLVWSDLVGRRVLGWRE-DGT-VDVL--------------------------LDATAFT 88 (305)
T ss_dssp SEEEEEEEGGGT---------EEEEEETTTTEEEEEET-TSC-EEEE--------------------------EESCSCE
T ss_pred CccCCeEeCCCC---------EEEEEECCCCEEEEEeC-CCC-EEEE--------------------------eCCCCcc
Confidence 455889999983 37777778899999988 433 2222 1122334
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeC-CCCCeeEEEEccCCCCCCCCcEEEE----EcC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSA-DTLPIRAVSWAPAESDSDSANVILT----AGH 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~~p~~~~~~~~~~las----~s~ 255 (568)
..++|. ++|+++++...++.|.+|+.. +. ...+. ...+ ....+.+++++++| .+++| |..
T Consensus 89 -~gl~~d--~dG~l~v~~~~~~~v~~~~~~-g~----~~~~~~~~~~~~~~~~~~i~~d~dG------~l~~td~~~g~~ 154 (305)
T 3dr2_A 89 -NGNAVD--AQQRLVHCEHGRRAITRSDAD-GQ----AHLLVGRYAGKRLNSPNDLIVARDG------AIWFTDPPFGLR 154 (305)
T ss_dssp -EEEEEC--TTSCEEEEETTTTEEEEECTT-SC----EEEEECEETTEECSCCCCEEECTTS------CEEEECCSGGGS
T ss_pred -ceeeEC--CCCCEEEEECCCCEEEEECCC-CC----EEEEEeccCCCccCCCCCEEECCCC------CEEEeCcCCCcc
Confidence 788988 888876666666889999975 31 11111 1111 12347789999999 78886 321
Q ss_pred -------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC------CcEEEEEccccccCCCC
Q 008363 256 -------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD------GAMRIVSLLKAAYDVPA 315 (568)
Q Consensus 256 -------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d------g~I~lwd~~~~~~~~~~ 315 (568)
.+ |..||..++. ..... .....+.++|+|+++.|+.+... +.|++||+..
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~-~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~------- 224 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSP-LQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD------- 224 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCC-CEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET-------
T ss_pred ccccccccccccCCCeEEEEcCCCCc-EEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC-------
Confidence 24 8888876552 22111 23456899999999988887665 7899999842
Q ss_pred CCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeeccCCCCCcceeeeecccCCCCceE
Q 008363 316 TGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTEDESAIT 394 (568)
Q Consensus 316 ~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~~~~~i~ 394 (568)
+. + .....+ .........++++++|.+.++. .+ .|.+|+.....+... .....+.- ..+.+++..|.
T Consensus 225 -~~-l-----~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~g~~~~~~-~~~~~~~~--~~f~~d~~~L~ 292 (305)
T 3dr2_A 225 -GA-L-----HDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDSDGQLLGHI-PTPGTASN--CTFDQAQQRLF 292 (305)
T ss_dssp -TE-E-----EEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECTTSCEEEEE-ECSSCCCE--EEECTTSCEEE
T ss_pred -CC-c-----cCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECCCCCEEEEE-ECCCceeE--EEEeCCCCEEE
Confidence 11 1 001111 1123345678899999855444 44 499999864433322 11112222 23446666665
Q ss_pred Ecc
Q 008363 395 VNT 397 (568)
Q Consensus 395 ~~~ 397 (568)
+.+
T Consensus 293 it~ 295 (305)
T 3dr2_A 293 ITG 295 (305)
T ss_dssp EEE
T ss_pred EEc
Confidence 543
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.82 E-value=9.3e-07 Score=90.94 Aligned_cols=194 Identities=8% Similarity=-0.053 Sum_probs=125.2
Q ss_pred EEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC-CcCccc
Q 008363 106 VKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG-GTQSIP 182 (568)
Q Consensus 106 v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~-h~~~V~ 182 (568)
++|+|++ +.|+++..++ .|.+|+...+.....+... .. +....
T Consensus 176 ia~~~~g----------~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~-----------------------~~~~~~~p- 221 (409)
T 3hrp_A 176 PAVTKDK----------QRVYSIGWEGTHTVYVYMKASGWAPTRIGQL-----------------------GSTFSGKI- 221 (409)
T ss_dssp CEECTTS----------SEEEEEBSSTTCEEEEEEGGGTTCEEEEEEC-----------------------CTTSCSCC-
T ss_pred eeEecCC----------CcEEEEecCCCceEEEEEcCCCceeEEeeec-----------------------cchhcCCc-
Confidence 8888888 6788887766 6888887654432221000 11 22333
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--eeCCCCCe-e-EEEEccCCCCCCCCcEEEEEcCCC-
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--FSADTLPI-R-AVSWAPAESDSDSANVILTAGHGG- 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--~~~h~~~V-~-~v~~~p~~~~~~~~~~las~s~d~- 257 (568)
.+++++ |++..|+++..++.|..||...... ..+.. ..++...- . .|+|+|++ ..++++-...+
T Consensus 222 ~~iav~--p~~g~lyv~d~~~~I~~~d~~~~~~----~~~~~~~~~g~~~~~P~~~ia~~p~~-----g~lyv~d~~~~~ 290 (409)
T 3hrp_A 222 GAVALD--ETEEWLYFVDSNKNFGRFNVKTQEV----TLIKQLELSGSLGTNPGPYLIYYFVD-----SNFYMSDQNLSS 290 (409)
T ss_dssp CBCEEC--TTSSEEEEECTTCEEEEEETTTCCE----EEEEECCCCSCCCCSSCCEEEEETTT-----TEEEEEETTTTE
T ss_pred EEEEEe--CCCCeEEEEECCCcEEEEECCCCCE----EEEecccccCCCCCCccccEEEeCCC-----CEEEEEeCCCCE
Confidence 778887 6344566677789999999886511 11111 22222222 3 99999953 16777766667
Q ss_pred EEEEECCCCCcceeeeCCCC---------------CCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCcc
Q 008363 258 LKFWDIRDPFRPLWDIHPAP---------------KFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~---------------~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
|+.||.... +..+.++. .....++++|+|+++++-. .++.|+.||+.. |..
T Consensus 291 I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~--------G~v-- 357 (409)
T 3hrp_A 291 VYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD--------GYV-- 357 (409)
T ss_dssp EEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT--------TEE--
T ss_pred EEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC--------CEE--
Confidence 999998743 22222221 3468999999999777767 789999999632 322
Q ss_pred CccccceEEEecC---------------CCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 322 GTKQQGLHLVNCS---------------SFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 322 ~~~~~~l~~~~~h---------------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
.++.++ -.....|++++++.++++-..++.|+.+.+
T Consensus 358 -------~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 358 -------STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp -------EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred -------EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 344443 245789999999888888888888888776
No 213
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.81 E-value=1e-09 Score=111.61 Aligned_cols=181 Identities=10% Similarity=-0.015 Sum_probs=96.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
+.|++++.||.|+.||..+|+.+-.+.. ..+ .+..+. .++..+++++.|
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~----------------------------~~~-~s~p~~--~~g~~~v~~s~d 58 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE----------------------------DPV-LQVPTH--VEEPAFLPDPND 58 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC----------------------------CCS-CCCC-------CCEEECTTT
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC----------------------------CCc-eecceE--cCCCEEEEeCCC
Confidence 6899999999999999999987755411 122 222222 456678888899
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCC-ee-EEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCCCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLP-IR-AVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAPKF 279 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~-~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~~~ 279 (568)
|.|..||..++ +.+..+..+... +. +..+. .+ ..+++++.++ |+.||..++ +.++.+..+.
T Consensus 59 g~l~a~d~~tG------~~~w~~~~~~~~~~~~sp~~~-~~------~~v~~g~~dg~v~a~D~~tG-~~~w~~~~~~-- 122 (369)
T 2hz6_A 59 GSLYTLGSKNN------EGLTKLPFTIPELVQASPCRS-SD------GILYMGKKQDIWYVIDLLTG-EKQQTLSSAF-- 122 (369)
T ss_dssp CCEEEC-----------CCSEECSCCHHHHHTTCSCC------------CCCCEEEEEEEEECCC---------------
T ss_pred CEEEEEECCCC------ceeeeeeccCccccccCceEe-cC------CEEEEEeCCCEEEEEECCCC-cEEEEecCCC--
Confidence 99999999876 444444322110 10 00111 22 4666777777 999999988 6666665443
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC---CEEEEEeCC
Q 008363 280 IYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT---GMVAYCSAD 356 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~---~~l~s~s~D 356 (568)
...++|++..|++++.|+.|+.||.+ +|+.++ .+..+. .....+..+. ..+++++.|
T Consensus 123 --~~~~~p~~~~v~~~~~dg~v~a~d~~--------tG~~~W--------~~~~~~--~~~~~~~~~~~~~~~v~~~~~d 182 (369)
T 2hz6_A 123 --ADSLSPSTSLLYLGRTEYTITMYDTK--------TRELRW--------NATYFD--YAASLPEDDVDYKMSHFVSNGD 182 (369)
T ss_dssp ------------EEEEEEEEEEECCCSS--------SSSCCC--------EEEEEE--ECCBCCCCCTTCCCCEEEEETS
T ss_pred --cccccccCCEEEEEecCCEEEEEECC--------CCCEEE--------eEeccc--ccCccccCCccccceEEEECCC
Confidence 24567788899999999999999994 476653 222111 1122333332 567788999
Q ss_pred CeEEEEEcCCCeee
Q 008363 357 GTVHRFQLTAKAVE 370 (568)
Q Consensus 357 g~v~iwd~~~~~~~ 370 (568)
|.|+.||..+++..
T Consensus 183 g~v~a~d~~tG~~~ 196 (369)
T 2hz6_A 183 GLVVTVDSESGDVL 196 (369)
T ss_dssp CEEEEECTTTCCEE
T ss_pred CEEEEEECCCCcEE
Confidence 99999999888654
No 214
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.80 E-value=3.4e-07 Score=101.94 Aligned_cols=162 Identities=10% Similarity=-0.013 Sum_probs=105.1
Q ss_pred CccceEEEEccCCCCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
..+ ..+.|+ |+|++|+..+.++ .|.+||+.++. ..+...+..+...+....+ |++ ..|+..
T Consensus 268 ~~~-~~~~~S--pDG~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~~~~l~~~~~~~~~~~~-~dg------~~l~~~ 333 (741)
T 1yr2_A 268 KRG-HGASVS--SDGRWVVITSSEGTDPVNTVHVARVTNGK----IGPVTALIPDLKAQWDFVD-GVG------DQLWFV 333 (741)
T ss_dssp TCE-EEEEEC--TTSCEEEEEEECTTCSCCEEEEEEEETTE----ECCCEEEECSSSSCEEEEE-EET------TEEEEE
T ss_pred eEE-EEEEEC--CCCCEEEEEEEccCCCcceEEEEECCCCC----CcccEEecCCCCceEEEEe-ccC------CEEEEE
Confidence 345 788998 8999888877554 89999997541 0114455555555555544 777 555555
Q ss_pred cC----CC-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 254 GH----GG-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 254 s~----d~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
+. +. |.+||+.++. .....+..+...+..++|+ ++..+++...|+..+||.+.. .|..
T Consensus 334 s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~-------~g~~-------- 397 (741)
T 1yr2_A 334 SGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDL-------DGKP-------- 397 (741)
T ss_dssp ECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEET-------TSCE--------
T ss_pred ECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeC-------CCCc--------
Confidence 43 24 9999998641 3333344455556778887 556667778899888887632 2322
Q ss_pred eEEEec-CCCCEEEEEEecCCCEEE-EEe---CCCeEEEEEcCCCeee
Q 008363 328 LHLVNC-SSFAIWSVQVSRLTGMVA-YCS---ADGTVHRFQLTAKAVE 370 (568)
Q Consensus 328 l~~~~~-h~~~V~~l~~sp~~~~l~-s~s---~Dg~v~iwd~~~~~~~ 370 (568)
+..+.. +...|..+.++|++..|+ +.+ ..++|++||+.++...
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~ 445 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTT 445 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 234443 356788999999986555 332 3478999999887643
No 215
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.76 E-value=3.6e-06 Score=83.67 Aligned_cols=187 Identities=8% Similarity=-0.062 Sum_probs=115.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC-cCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG-TQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h-~~~ 180 (568)
.+.+++|+|++ .++++ +.+ .|.+||..+++..... ... .+. ...
T Consensus 91 ~v~~i~~~~dg----------~l~v~-~~~-gl~~~d~~~g~~~~~~-~~~----------------------~~~~~~~ 135 (326)
T 2ghs_A 91 MGSALAKISDS----------KQLIA-SDD-GLFLRDTATGVLTLHA-ELE----------------------SDLPGNR 135 (326)
T ss_dssp CEEEEEEEETT----------EEEEE-ETT-EEEEEETTTCCEEEEE-CSS----------------------TTCTTEE
T ss_pred cceEEEEeCCC----------eEEEE-ECC-CEEEEECCCCcEEEEe-eCC----------------------CCCCCCC
Confidence 45699999998 56654 444 4999999876543211 100 111 123
Q ss_pred cceEEEEccCCCCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEE-EEEcC
Q 008363 181 IPLTMEWSTSPPHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVI-LTAGH 255 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~l-as~s~ 255 (568)
+ ..+.++ ++|+++++...+ +...||.+..+ ... .+..+......++|+|++ +.| ++.+.
T Consensus 136 ~-~~i~~d--~~G~l~v~~~~~~~~~~~~~l~~~~~g------~~~-~~~~~~~~~~~i~~s~dg------~~lyv~~~~ 199 (326)
T 2ghs_A 136 S-NDGRMH--PSGALWIGTMGRKAETGAGSIYHVAKG------KVT-KLFADISIPNSICFSPDG------TTGYFVDTK 199 (326)
T ss_dssp E-EEEEEC--TTSCEEEEEEETTCCTTCEEEEEEETT------EEE-EEEEEESSEEEEEECTTS------CEEEEEETT
T ss_pred C-CCEEEC--CCCCEEEEeCCCcCCCCceEEEEEeCC------cEE-EeeCCCcccCCeEEcCCC------CEEEEEECC
Confidence 4 788888 788776654421 23444444333 222 222233457899999998 555 44455
Q ss_pred CC-EEEEECC--CC-C----cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 256 GG-LKFWDIR--DP-F----RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 256 d~-v~lwD~~--~~-~----~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
++ |.+||+. ++ . ..+..+......+..++++++|.+.++...++.|.+||.. |+.
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~---------g~~-------- 262 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD---------GNH-------- 262 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT---------CCE--------
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC---------CCE--------
Confidence 56 9999986 33 1 1122333344557899999999877777677889999872 333
Q ss_pred eEEEecCCCCEEEEEEe-cCCCEEEEEeCC
Q 008363 328 LHLVNCSSFAIWSVQVS-RLTGMVAYCSAD 356 (568)
Q Consensus 328 l~~~~~h~~~V~~l~~s-p~~~~l~s~s~D 356 (568)
+..+..+...+++++|+ +++..|+.++..
T Consensus 263 ~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 263 IARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp EEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 24566666679999998 887766555433
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.59 E-value=3.7e-06 Score=82.61 Aligned_cols=188 Identities=8% Similarity=-0.054 Sum_probs=115.0
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCC-cCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGG-TQS 180 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h-~~~ 180 (568)
.+..++|.+++ +++++...++.|.+|+.. ++.. .+.... .+. ...
T Consensus 87 ~~~gl~~d~dG----------~l~v~~~~~~~v~~~~~~-g~~~-~~~~~~----------------------~~~~~~~ 132 (305)
T 3dr2_A 87 FTNGNAVDAQQ----------RLVHCEHGRRAITRSDAD-GQAH-LLVGRY----------------------AGKRLNS 132 (305)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTT-SCEE-EEECEE----------------------TTEECSC
T ss_pred ccceeeECCCC----------CEEEEECCCCEEEEECCC-CCEE-EEEecc----------------------CCCccCC
Confidence 45599999998 666665566889999986 4422 221100 111 122
Q ss_pred cceEEEEccCCCCCEEEE----EeC-------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC
Q 008363 181 IPLTMEWSTSPPHDYLLA----GCH-------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD 243 (568)
Q Consensus 181 V~~~v~~s~~~~g~~l~s----gs~-------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 243 (568)
+ ..+.+. ++|.++++ |.. .+.|..||..++ ...... +......++|+|++
T Consensus 133 ~-~~i~~d--~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g------~~~~~~--~~~~p~gl~~spdg-- 199 (305)
T 3dr2_A 133 P-NDLIVA--RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGS------PLQRMA--DLDHPNGLAFSPDE-- 199 (305)
T ss_dssp C-CCEEEC--TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSC------CCEEEE--EESSEEEEEECTTS--
T ss_pred C-CCEEEC--CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCC------cEEEEe--cCCCCcceEEcCCC--
Confidence 3 678888 88988876 332 245666766544 222222 33457889999998
Q ss_pred CCCCcEEEEEcCC------C-EEEEECCCCCc-ceeee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCC
Q 008363 244 SDSANVILTAGHG------G-LKFWDIRDPFR-PLWDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVP 314 (568)
Q Consensus 244 ~~~~~~las~s~d------~-v~lwD~~~~~~-~~~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~ 314 (568)
..|+.+... . |.+||+..... ....+ ....+....++++++|+ |.+++.+ .|.+|+.
T Consensus 200 ----~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-------- 265 (305)
T 3dr2_A 200 ----QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-------- 265 (305)
T ss_dssp ----SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT--------
T ss_pred ----CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC--------
Confidence 655555433 5 99999875420 00111 11233456789999999 4454444 4889987
Q ss_pred CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEE
Q 008363 315 ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVH 360 (568)
Q Consensus 315 ~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~ 360 (568)
.|+. +..+..+. .+.+++|+++++.|..++.++..+
T Consensus 266 -~g~~--------~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 266 -DGQL--------LGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp -TSCE--------EEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred -CCCE--------EEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 2433 24555444 578999999988888888764433
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.54 E-value=5.5e-06 Score=91.37 Aligned_cols=200 Identities=12% Similarity=0.102 Sum_probs=128.0
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCc-------------EEEEECCCCceeeE-EeccCCccCCCCceEEEeecce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGS-------------LEVWEVPLLRTMKA-IYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~-------------V~iwd~~~~~~~~~-l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
..++|+ ++ +.|+.++.+.. |++|++.++..... ++..
T Consensus 178 ~~~~Ws-Dg----------~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~------------------ 228 (693)
T 3iuj_A 178 SGISWL-GN----------EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA------------------ 228 (693)
T ss_dssp CCCEEE-TT----------TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC------------------
T ss_pred ccEEEe-CC----------CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec------------------
Confidence 368899 98 67888877743 89999887543211 1000
Q ss_pred ecccccC-CcCccceEEEEccCCCCCEEEEEeC----CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363 170 CSMLKCG-GTQSIPLTMEWSTSPPHDYLLAGCH----DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 170 ~~~~~~~-h~~~V~~~v~~s~~~~g~~l~sgs~----Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 244 (568)
.. |...+ ..+.|+ ++|++|+.... +..|.+||+.++. .....+..+....... |++++.
T Consensus 229 -----~~~~~~~~-~~~~~S--pDg~~l~~~~~~~~~~~~i~~~d~~~~~-----~~~~~l~~~~~~~~~~-~~~~g~-- 292 (693)
T 3iuj_A 229 -----IPAQHHRY-VGATVT--EDDRFLLISAANSTSGNRLYVKDLSQEN-----APLLTVQGDLDADVSL-VDNKGS-- 292 (693)
T ss_dssp -----SGGGCCSE-EEEEEC--TTSCEEEEEEESSSSCCEEEEEETTSTT-----CCCEEEECSSSSCEEE-EEEETT--
T ss_pred -----CCCCCeEE-EEEEEc--CCCCEEEEEEccCCCCcEEEEEECCCCC-----CceEEEeCCCCceEEE-EeccCC--
Confidence 22 33444 678888 88988755432 3589999987651 2344555666666665 555551
Q ss_pred CCCcEEEEEcCC---C-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CC--cEEEEEccccccCCCCC
Q 008363 245 DSANVILTAGHG---G-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD-DG--AMRIVSLLKAAYDVPAT 316 (568)
Q Consensus 245 ~~~~~las~s~d---~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg--~I~lwd~~~~~~~~~~~ 316 (568)
.+++.+..+ . |..+|+.++.. ....+..|...+. .|++++.+|+.... ++ .|++||+.
T Consensus 293 ---~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--------- 358 (693)
T 3iuj_A 293 ---TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--------- 358 (693)
T ss_dssp ---EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT---------
T ss_pred ---EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC---------
Confidence 566666554 4 99999987632 1344556665554 89999999888765 44 68888873
Q ss_pred CCCccCccccceEEEe-cCCCCEEEEEEecCCCEEEEEeCC----CeEEEEEcCCCeee
Q 008363 317 GKPFAGTKQQGLHLVN-CSSFAIWSVQVSRLTGMVAYCSAD----GTVHRFQLTAKAVE 370 (568)
Q Consensus 317 g~~~~~~~~~~l~~~~-~h~~~V~~l~~sp~~~~l~s~s~D----g~v~iwd~~~~~~~ 370 (568)
|.. ...+. ...+.+..+.+++++..|+....+ +.|+.||+.++...
T Consensus 359 g~~--------~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 359 GKR--------VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp SCE--------EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred CCe--------eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 221 12332 234567778888888666555444 88999999876543
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.53 E-value=1.1e-05 Score=82.18 Aligned_cols=193 Identities=13% Similarity=0.187 Sum_probs=121.4
Q ss_pred cEEEEEeCCCcEEEEECCCC----ceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLL----RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLA 198 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~----~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~s 198 (568)
.+++.+..+++|.|+|+.+. +..+++.+.. +. ...+... |..+... |+| ++++
T Consensus 97 ~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~--------------~~----~~~g~s~--Ph~~~~~--pdG-i~Vs 153 (462)
T 2ece_A 97 FLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEE--------------VK----KVSGYSR--LHTVHCG--PDA-IYIS 153 (462)
T ss_dssp EEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHH--------------HH----HHHCEEE--EEEEEEC--SSC-EEEE
T ss_pred EEEEccCCCCeEEEEECCCCCCCceeeeeechhh--------------cc----cccCCCc--ccceeEC--CCe-EEEE
Confidence 56777788999999999753 3333321000 00 0011111 2455655 788 7777
Q ss_pred EeCC------CeEEEEEccCCCCCCCCceeEEeeCCC---CCeeEEEEccCCCCCCCCcEEEEEc---------------
Q 008363 199 GCHD------GTVALWKFVASDSSIDSRPLLCFSADT---LPIRAVSWAPAESDSDSANVILTAG--------------- 254 (568)
Q Consensus 199 gs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~---~~V~~v~~~p~~~~~~~~~~las~s--------------- 254 (568)
+..+ |.|.++|..+. +.+..+.... ..-+.+.|+|++ +++++..
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~------~v~~~~~~~~~~~~~~Yd~~~~p~~------~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSF------EPLGKWEIDRGDQYLAYDFWWNLPN------EVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTC------CEEEECCSBCTTCCCCCCEEEETTT------TEEEECBCCCHHHHTTCCCTTT
T ss_pred cCCCcCCCCCCeEEEEECCCC------eEEEEEccCCCCccccceEEECCCC------CEEEEccCcCccccccccchhh
Confidence 6655 78999999876 6777764221 224568889998 7888875
Q ss_pred ----CCC-EEEEECCCCCcceeeeCCC-C-CCeEEEEE--cCCCCEEEEEe------CCCcEEEEEccccccCCCCCCCC
Q 008363 255 ----HGG-LKFWDIRDPFRPLWDIHPA-P-KFIYGLDW--LPDPGCVILSF------DDGAMRIVSLLKAAYDVPATGKP 319 (568)
Q Consensus 255 ----~d~-v~lwD~~~~~~~~~~~~~h-~-~~i~~l~~--sp~~~~l~s~~------~dg~I~lwd~~~~~~~~~~~g~~ 319 (568)
.+. |.+||+.+. +.+.++..- . .....|.| +|+++++++++ .+++|.+|.... |..
T Consensus 222 ~~~~~~d~V~v~D~~~~-k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~--------g~~ 292 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKR-KRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED--------GKW 292 (462)
T ss_dssp HHHHSCCEEEEEETTTT-EEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET--------TEE
T ss_pred hhhccCCEEEEEECCCC-cEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC--------Cce
Confidence 234 999999976 555555431 1 22345555 99999998876 567888776632 211
Q ss_pred ccCccccceEEE--ec----------------CCCCEEEEEEecCCCEEEEEeC-CCeEEEEEcC
Q 008363 320 FAGTKQQGLHLV--NC----------------SSFAIWSVQVSRLTGMVAYCSA-DGTVHRFQLT 365 (568)
Q Consensus 320 ~~~~~~~~l~~~--~~----------------h~~~V~~l~~sp~~~~l~s~s~-Dg~v~iwd~~ 365 (568)
..+..+ .. -......|.++++|++|.++.. .+.|.+||+.
T Consensus 293 ------~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 293 ------NAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ------EEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred ------eEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 111111 00 0234678999999998877764 6899999985
No 219
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.53 E-value=2.1e-05 Score=80.09 Aligned_cols=207 Identities=15% Similarity=0.157 Sum_probs=129.6
Q ss_pred CCCcceEEEeec-------cCCceeeEEEEccCCCCcccccCcccEEEEEeCC------CcEEEEECCCCceeeEEeccC
Q 008363 86 DIALPRVVLCLA-------HNGKVAWDVKWKPYNAVDCKCKQRLGYLAVLLGN------GSLEVWEVPLLRTMKAIYLSS 152 (568)
Q Consensus 86 ~~~~p~~~~~~~-------h~~~~v~~v~~sp~~~~~~~~~~~~~~las~s~d------g~V~iwd~~~~~~~~~l~~~~ 152 (568)
+...|++...+. +....-+.+...|++ +++++..+ |.|.++|..+++.+..+..
T Consensus 116 ~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-----------i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~-- 182 (462)
T 2ece_A 116 NPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-----------IYISALGNEEGEGPGGILMLDHYSFEPLGKWEI-- 182 (462)
T ss_dssp CTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-----------EEEEEEEETTSCSCCEEEEECTTTCCEEEECCS--
T ss_pred CCCCceeeeeechhhcccccCCCcccceeECCCe-----------EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEcc--
Confidence 345567776552 122234467888887 56666666 7899999999888766521
Q ss_pred CccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-------------------CCCeEEEEEccCC
Q 008363 153 MKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC-------------------HDGTVALWKFVAS 213 (568)
Q Consensus 153 ~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs-------------------~Dg~I~iwd~~~~ 213 (568)
.+....+++.+-|+ |+++.+++.. .+.+|.+||+.+.
T Consensus 183 ----------------------~~~~~~~~Yd~~~~--p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 183 ----------------------DRGDQYLAYDFWWN--LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp ----------------------BCTTCCCCCCEEEE--TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred ----------------------CCCCccccceEEEC--CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 11222234678888 8888888874 4689999999866
Q ss_pred CCCCCCceeEEeeCC--CCCeeEEEE--ccCCCCCCCCcEEEEEc------CCC-EEEEECCCCC-cceee--eCC----
Q 008363 214 DSSIDSRPLLCFSAD--TLPIRAVSW--APAESDSDSANVILTAG------HGG-LKFWDIRDPF-RPLWD--IHP---- 275 (568)
Q Consensus 214 ~~~~~~~~~~~~~~h--~~~V~~v~~--~p~~~~~~~~~~las~s------~d~-v~lwD~~~~~-~~~~~--~~~---- 275 (568)
+.+.++..- ......|.| +|++ .++..+. .++ |.+|....+. ..... +..
T Consensus 239 ------k~~~tI~vg~~g~~P~~i~f~~~Pdg------~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 239 ------KRIHSLTLGEENRMALELRPLHDPTK------LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp ------EEEEEEESCTTEEEEEEEEECSSTTC------CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECC
T ss_pred ------cEeeEEecCCCCCccceeEeeECCCC------CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccc
Confidence 666666542 123456666 9998 5555554 444 7665544321 01111 111
Q ss_pred ------------CCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccceEEEecC--------
Q 008363 276 ------------APKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-------- 334 (568)
Q Consensus 276 ------------h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-------- 334 (568)
-......|.++|||++|+++.. .+.|.+||+... +++ +.+..+...
T Consensus 307 ~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~-------~~~------~lv~~I~tGG~~~~~~~ 373 (462)
T 2ece_A 307 GNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP-------FKP------VLTGKVKLGGIFHRADH 373 (462)
T ss_dssp SSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST-------TSC------EEEEEEECBTTTTCBCC
T ss_pred ccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC-------CCc------EEEEEEEeCCeeccccc
Confidence 0234678999999999999876 789999999531 111 112222211
Q ss_pred ---C---CCEEEEEEecCCCEEEEEe
Q 008363 335 ---S---FAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 335 ---~---~~V~~l~~sp~~~~l~s~s 354 (568)
. +.-..++++|+|++|+++.
T Consensus 374 ~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 374 PAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 1247899999999888887
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.53 E-value=1.1e-05 Score=82.80 Aligned_cols=223 Identities=12% Similarity=0.037 Sum_probs=126.7
Q ss_pred EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.++++|++ ++|+++. .++.|.++|..+++.+..+.-.. + ..
T Consensus 122 gia~SpDg----------k~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g-------------~-~r----- 172 (426)
T 3c75_H 122 HPVAAEDG----------SFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPD-------------A-PR----- 172 (426)
T ss_dssp EEEECTTS----------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETT-------------C-CC-----
T ss_pred ceEECCCC----------CEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCC-------------c-cc-----
Confidence 68999999 6666665 46789999999988877652110 0 00
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCC-------CeeEEEEccCCC---
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTL-------PIRAVSWAPAES--- 242 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~-------~V~~v~~~p~~~--- 242 (568)
...... |..+.++ |+|++|+++.. +++|.+.|+.+. +.+..+..-.. .-.-+++++++.
T Consensus 173 ~~~g~~-P~~~~~s--pDGk~lyV~n~~~~~~VsVID~~t~------kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~ 243 (426)
T 3c75_H 173 FLVGTY-QWMNALT--PDNKNLLFYQFSPAPAVGVVDLEGK------TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLAR 243 (426)
T ss_dssp CCBSCC-GGGSEEC--TTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECCSEEEEEEEETTEEEEEETTSSEEE
T ss_pred cccCCC-cceEEEc--CCCCEEEEEecCCCCeEEEEECCCC------eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEE
Confidence 000011 3667877 99999998874 579999999876 44444432100 001122333330
Q ss_pred -------C---------------------CCCCcEEEEEcCCC-EEEEECCCCCcce---eeeC-C-------CCCCeEE
Q 008363 243 -------D---------------------SDSANVILTAGHGG-LKFWDIRDPFRPL---WDIH-P-------APKFIYG 282 (568)
Q Consensus 243 -------~---------------------~~~~~~las~s~d~-v~lwD~~~~~~~~---~~~~-~-------h~~~i~~ 282 (568)
. ...+..++..+..+ |.+.|+......+ ..+. . .......
T Consensus 244 V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~ 323 (426)
T 3c75_H 244 VDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQ 323 (426)
T ss_dssp EECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSC
T ss_pred EECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCcee
Confidence 0 00001222222333 5555554321100 0000 0 0111123
Q ss_pred EEEcCCCCEEEEEeC----------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEE
Q 008363 283 LDWLPDPGCVILSFD----------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVA 351 (568)
Q Consensus 283 l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~ 351 (568)
++++|++..|++... .+.|.++|+.+ ++.+ ..+... ...+++.|+|+++ +|+
T Consensus 324 va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T--------~kvv--------~~I~vg-~~P~gia~spDg~~~ly 386 (426)
T 3c75_H 324 TAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET--------GERI--------NKIELG-HEIDSINVSQDAEPLLY 386 (426)
T ss_dssp EEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT--------CCEE--------EEEEEE-EEECEEEECCSSSCEEE
T ss_pred eEEcCCCCEEEEEecccccccccCCCCEEEEEECCC--------CeEE--------EEEECC-CCcCeEEEccCCCEEEE
Confidence 688888887777642 35799999843 4332 344322 2468999999998 888
Q ss_pred EEe-CCCeEEEEEcCCCeeeccC-CCCCcceee
Q 008363 352 YCS-ADGTVHRFQLTAKAVEKDH-SRNRPMHFL 382 (568)
Q Consensus 352 s~s-~Dg~v~iwd~~~~~~~~~~-~~~~~~~~~ 382 (568)
++. .++.|.++|+.+.++.+.. .....|+.+
T Consensus 387 v~n~~s~~VsVID~~t~kvv~tI~~vG~~P~~i 419 (426)
T 3c75_H 387 ALSAGTQTLHIYDAATGEELRSVDQLGRGPQII 419 (426)
T ss_dssp EEETTTTEEEEEETTTCCEEEEECCCSSSCCEE
T ss_pred EEcCCCCeEEEEECCCCCEEEEecCCCCCCcEE
Confidence 887 5999999999999887663 333444433
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.51 E-value=0.0002 Score=68.49 Aligned_cols=202 Identities=8% Similarity=-0.032 Sum_probs=119.5
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
...++|+|++. .++++-..++.|.+++.........+ ...... |
T Consensus 38 ~~gi~~d~~~~---------~ly~~d~~~~~I~~~~~~g~~~~~~~--------------------------~~~~~~-p 81 (267)
T 1npe_A 38 IIGLAFDCVDK---------VVYWTDISEPSIGRASLHGGEPTTII--------------------------RQDLGS-P 81 (267)
T ss_dssp EEEEEEETTTT---------EEEEEETTTTEEEEEESSSCCCEEEE--------------------------CTTCCC-E
T ss_pred EEEEEEecCCC---------EEEEEECCCCEEEEEecCCCCcEEEE--------------------------ECCCCC-c
Confidence 34899999762 45555556789999998764322111 111112 3
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC--CC-E
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH--GG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v 258 (568)
..+++. +++. ++++-...+.|.++++... ...............++++|++ ..++++... .+ |
T Consensus 82 ~~ia~d--~~~~~lyv~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~i~vd~~~-----g~lyv~~~~~~~~~I 148 (267)
T 1npe_A 82 EGIALD--HLGRTIFWTDSQLDRIEVAKMDGT------QRRVLFDTGLVNPRGIVTDPVR-----GNLYWTDWNRDNPKI 148 (267)
T ss_dssp EEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEETTT-----TEEEEEECCSSSCEE
T ss_pred cEEEEE--ecCCeEEEEECCCCEEEEEEcCCC------CEEEEEECCCCCccEEEEeeCC-----CEEEEEECCCCCcEE
Confidence 778877 6544 4555556789999998743 1111222222457899999964 155555543 34 8
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA 337 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~ 337 (568)
..+++....... .....-.....++++|++..|+.+. ..+.|.++|+.. ... ...+.+ ...
T Consensus 149 ~~~~~dg~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g---------~~~-------~~~~~~-~~~ 210 (267)
T 1npe_A 149 ETSHMDGTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ---------PGR-------RKVLEG-LQY 210 (267)
T ss_dssp EEEETTSCCCEE-EECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE---------EEE-------EEEEEC-CCS
T ss_pred EEEecCCCCcEE-EEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC---------Cce-------EEEecC-CCC
Confidence 888886542221 1212234568999999887777665 478999999842 110 112222 223
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
...+++. .+.++++....+.|.++|..+++....
T Consensus 211 P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 211 PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (267)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEE
Confidence 4566654 344444444568999999988776554
No 222
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=4.5e-05 Score=72.74 Aligned_cols=205 Identities=5% Similarity=-0.063 Sum_probs=128.9
Q ss_pred eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.++..+.|... ....+.|+|++ .++++.+. ++.|+++|+.+++.+..+...
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg----------~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~---------------- 63 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND----------TLFESTGLYGRSSVRQVALQTGKVENIHKMD---------------- 63 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT----------EEEEEECSTTTCEEEEEETTTCCEEEEEECC----------------
T ss_pred eEEEEEECCCCCCcccEEEeCCC----------eEEEECCCCCCCEEEEEECCCCCEEEEEecC----------------
Confidence 34555667653 34589999987 45554443 689999999999888775211
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+.. +..+++. .+.+.++.-.++.|.++|..+. +.+..+...... .+.+++++.
T Consensus 64 --------~~~f--geGi~~~---g~~lyv~t~~~~~v~viD~~t~------~v~~~i~~g~~~--g~glt~Dg~----- 117 (266)
T 2iwa_A 64 --------DSYF--GEGLTLL---NEKLYQVVWLKNIGFIYDRRTL------SNIKNFTHQMKD--GWGLATDGK----- 117 (266)
T ss_dssp --------TTCC--EEEEEEE---TTEEEEEETTCSEEEEEETTTT------EEEEEEECCSSS--CCEEEECSS-----
T ss_pred --------CCcc--eEEEEEe---CCEEEEEEecCCEEEEEECCCC------cEEEEEECCCCC--eEEEEECCC-----
Confidence 1111 1345544 2345566667899999999866 677777432111 233455662
Q ss_pred cEEEEEcCCC-EEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCcc
Q 008363 248 NVILTAGHGG-LKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 248 ~~las~s~d~-v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
.++++- .++ |.++|..+. +.+..+.- +. ..++.+.|. +++..+....++.|.+.|.. +|+.+
T Consensus 118 ~l~vs~-gs~~l~viD~~t~-~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~--------tg~V~- 185 (266)
T 2iwa_A 118 ILYGSD-GTSILYEIDPHTF-KLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAK--------DGTLL- 185 (266)
T ss_dssp SEEEEC-SSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETT--------TCCEE-
T ss_pred EEEEEC-CCCeEEEEECCCC-cEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECC--------CCcEE-
Confidence 455554 455 999999876 44433331 11 236788888 67544444457899999994 46543
Q ss_pred CccccceEEEecC-------------CCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCC
Q 008363 322 GTKQQGLHLVNCS-------------SFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 322 ~~~~~~l~~~~~h-------------~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~ 366 (568)
..+... ....+.|+|+|++ .+++++...+.|.+.++..
T Consensus 186 -------~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 186 -------GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp -------EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred -------EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 333311 1356899999997 4666677888999888854
No 223
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.44 E-value=6.4e-06 Score=82.96 Aligned_cols=83 Identities=6% Similarity=-0.033 Sum_probs=58.0
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEE
Q 008363 283 LDWLPDPGCVILSFD---------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAY 352 (568)
Q Consensus 283 l~~sp~~~~l~s~~~---------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s 352 (568)
++|+|+++.++.+.. ++.+.++|+.+ ++.+ ..+.... ..++|+|+|+++ ++++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--------~~vv--------~~i~vg~-~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--------GQTS--------GPISNGH-DSDAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--------CCEE--------ECCEEEE-EECEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--------CeEE--------EEEECCC-CcceEEECCCCCEEEEE
Confidence 689999998887643 23566999954 4332 2333222 478999999996 5677
Q ss_pred Ee-CCCeEEEEEcCCCeeeccCCCCCcceee
Q 008363 353 CS-ADGTVHRFQLTAKAVEKDHSRNRPMHFL 382 (568)
Q Consensus 353 ~s-~Dg~v~iwd~~~~~~~~~~~~~~~~~~~ 382 (568)
.. .++.|.++|+.+.++.+.....+.|+-+
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i 362 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDKGPESL 362 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCSCCCEE
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCCCCCEE
Confidence 77 5999999999999888765544444433
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.44 E-value=2.6e-05 Score=78.57 Aligned_cols=199 Identities=13% Similarity=0.102 Sum_probs=124.5
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeC--CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLG--NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~--dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
+.++|+|+| ++|+++.. ++.|.|+|+.+++.+.++...
T Consensus 140 ~~~a~spDG----------k~lyVan~~~~~~VsVID~~t~~vv~tI~v~------------------------------ 179 (386)
T 3sjl_D 140 WMTSLTPDG----------KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVP------------------------------ 179 (386)
T ss_dssp GGEEECTTS----------SEEEEEECSSSCEEEEEETTTTEEEEEEECC------------------------------
T ss_pred ceEEEcCCC----------CEEEEEEcCCCCeEEEEECCCCcEEEEEECC------------------------------
Confidence 368999999 77877764 689999999998888775211
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccC-CCCCCCCceeEEeeCC----CCCee-EEEEc-cCCCCCCCCcEEEEEc
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVA-SDSSIDSRPLLCFSAD----TLPIR-AVSWA-PAESDSDSANVILTAG 254 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~-~~~~~~~~~~~~~~~h----~~~V~-~v~~~-p~~~~~~~~~~las~s 254 (568)
-|....|. ..+.+++.+.||++.+.++.. +. .......+ ..++. ...|. +++ .++. .+
T Consensus 180 -g~~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~------v~~~~~~~~~~~~~~~~~~~~~~~~dG------~~~~-vs 244 (386)
T 3sjl_D 180 -DCYHIFPT-APDTFFMHCRDGSLAKVAFGTEGT------PEITHTEVFHPEDEFLINHPAYSQKAG------RLVW-PT 244 (386)
T ss_dssp -SEEEEEEE-ETTEEEEEETTSCEEEEECCSSSC------CEEEECCCCSCTTSCBCSCCEEETTTT------EEEE-EB
T ss_pred -CcceeecC-CCceeEEECCCCCEEEEECCCCCe------EEEeecceeccccccccccceeEcCCC------cEEE-Ee
Confidence 11111121 235677888888888888865 32 11111111 12222 24564 555 4444 45
Q ss_pred CCC-EEEEECCCCCc-ceeeeC---------C-CCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEccccccC
Q 008363 255 HGG-LKFWDIRDPFR-PLWDIH---------P-APKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAYD 312 (568)
Q Consensus 255 ~d~-v~lwD~~~~~~-~~~~~~---------~-h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~~ 312 (568)
.++ |.+.|+.+... .+..+. + ..+....++++|++..|+.... .+.|.++|+.
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~----- 319 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK----- 319 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT-----
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECC-----
Confidence 567 99999976531 111111 0 1223345778999998888743 2568899994
Q ss_pred CCCCCCCccCccccceEEEecCCCCEEEEEEecCCC-EEEEE-eCCCeEEEEEcCCCeeeccCC
Q 008363 313 VPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG-MVAYC-SADGTVHRFQLTAKAVEKDHS 374 (568)
Q Consensus 313 ~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~-~l~s~-s~Dg~v~iwd~~~~~~~~~~~ 374 (568)
+++.+ ..+.. ...+++|+|+++++ +|+++ ..++.|.++|..+++..+...
T Consensus 320 ---t~kv~--------~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 320 ---TGERL--------AKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp ---TCCEE--------EEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred ---CCeEE--------EEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 34443 33332 23678999999986 66664 458999999999988776543
No 225
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.43 E-value=0.00026 Score=71.57 Aligned_cols=125 Identities=10% Similarity=0.023 Sum_probs=78.6
Q ss_pred cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------CC
Q 008363 133 SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------HD 202 (568)
Q Consensus 133 ~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~D 202 (568)
+|.+||..+++.+..+. .+ ..+ .++++ |+|++|+++. .+
T Consensus 48 ~v~v~D~~t~~~~~~i~-------------------------~g---~~p-~i~~s--pDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVN-------------------------GG---FLP-NPVAA--HSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred EEEEEECCCCeEEEEec-------------------------CC---CCC-CeEEC--CCCCEEEEEeccccccccCCCC
Confidence 88999999987765541 11 123 67777 8999988886 36
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCcceee
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLWD 272 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~~ 272 (568)
+.|.+||..+. +.+..+... ......++|+|++ ++|+.++. +. |.++| .+. +.+..
T Consensus 97 ~~v~viD~~t~------~~~~~i~~~~~~~~~~g~~p~~~~~spDG------~~l~v~n~~~~~~v~viD-~t~-~~~~~ 162 (373)
T 2mad_H 97 DYVEVFDPVTF------LPIADIELPDAPRFDVGPYSWMNANTPNN------ADLLFFQFAAGPAVGLVV-QGG-SSDDQ 162 (373)
T ss_pred CeEEEEECCCC------cEEEEEECCCccccccCCCccceEECCCC------CEEEEEecCCCCeEEEEE-CCC-CEEeE
Confidence 78999999865 444444221 1235689999999 77777653 35 99999 776 55555
Q ss_pred -eCCCCCCeEEEEEcCCCC-EEEEEeCCCcEEEEEc
Q 008363 273 -IHPAPKFIYGLDWLPDPG-CVILSFDDGAMRIVSL 306 (568)
Q Consensus 273 -~~~h~~~i~~l~~sp~~~-~l~s~~~dg~I~lwd~ 306 (568)
+.. .. ++.+.|++. .+++.+.||.+.++|.
T Consensus 163 ~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~ 194 (373)
T 2mad_H 163 LLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH 194 (373)
T ss_pred EcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC
Confidence 421 21 233444442 3333445666666655
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.41 E-value=2e-05 Score=78.82 Aligned_cols=199 Identities=8% Similarity=-0.012 Sum_probs=121.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeC-----CCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccC
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLG-----NGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCG 176 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~-----dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 176 (568)
.+..|++.+++ .++++-.. ++.|.+||+.+++.+..+..+.. ...
T Consensus 68 ~p~gv~~d~~g----------~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~--------------------~~~ 117 (343)
T 2qe8_A 68 TVLGIKSDGNG----------IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP--------------------ITL 117 (343)
T ss_dssp CEEEEEECSSS----------EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT--------------------TSC
T ss_pred EeeEEEEcCCC----------cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh--------------------hcc
Confidence 45599999998 55555443 57899999998876665522110 011
Q ss_pred CcCccceEEEEccCCCCCE-EEEEe---CCCeEEEEEccCCCCCCCCceeEEeeCC------------------------
Q 008363 177 GTQSIPLTMEWSTSPPHDY-LLAGC---HDGTVALWKFVASDSSIDSRPLLCFSAD------------------------ 228 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~-l~sgs---~Dg~I~iwd~~~~~~~~~~~~~~~~~~h------------------------ 228 (568)
+...+ ..+++. +++.. +++.. .++.|.+||+.++ +..+.+.+|
T Consensus 118 ~~~~~-~~v~vd--~~~g~~yvtd~~~~~~~~i~v~d~~~g------~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g 188 (343)
T 2qe8_A 118 SNSFV-NDLAVD--LIHNFVYISDPAPDDKAALIRVDLQTG------LAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDG 188 (343)
T ss_dssp TTCCC-CEEEEE--TTTTEEEEEECCSGGGCEEEEEETTTC------CEEEECTTCTTTSCCSCCCEETTEECBEECTTS
T ss_pred ccccc-ceEEEe--cCCCEEEEEcCccCCCCeEEEEECCCC------CEEEEecCCCcccccccceeECCEEEEeccCCC
Confidence 22233 677777 54444 45554 5789999998755 222222221
Q ss_pred -----CCCeeEEEEccCCCCCCCCcEEEEEcCCC--EEEEECC---CCC----cce--eeeCCCCCCeEEEEEcCCCCEE
Q 008363 229 -----TLPIRAVSWAPAESDSDSANVILTAGHGG--LKFWDIR---DPF----RPL--WDIHPAPKFIYGLDWLPDPGCV 292 (568)
Q Consensus 229 -----~~~V~~v~~~p~~~~~~~~~~las~s~d~--v~lwD~~---~~~----~~~--~~~~~h~~~i~~l~~sp~~~~l 292 (568)
...+..|+|+|++ +.|+.+...+ |..++.. ... ... ....++......++++++|..+
T Consensus 189 ~~~~~~~~~~gia~s~dg------~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~ 262 (343)
T 2qe8_A 189 TVIRPHLGVNGIVLDAEN------EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIY 262 (343)
T ss_dssp CEECCCCCEEEEEECTTS------CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEE
T ss_pred ceeceecccceeEeccCC------CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEE
Confidence 1236889999998 6777665554 5555532 110 000 0111233445679999999988
Q ss_pred EEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 293 ILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 293 ~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
++...++.|.+||.. +|+. ..+. .+-..+.+++|.+++.++++.+..+.+.+|
T Consensus 263 va~~~~~~V~~~d~~--------~G~~---------~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 263 VGDLAHSAIGVITSA--------DRAY---------KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EEEGGGTEEEEEETT--------TTEE---------EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EEccCCCeEEEEECC--------CCCE---------EEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 888889999999982 2322 1222 124568899999988888777755444333
No 227
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.38 E-value=2.8e-05 Score=78.36 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=134.2
Q ss_pred EEEEccCCCCcccccCcccEEEEEe----------CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL----------GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s----------~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.++++|++ ++|+++. .++.|.+||..+++.+..+.-... .
T Consensus 82 ~va~spDG----------~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g--------------------~ 131 (386)
T 3sjl_D 82 NPVVADDG----------SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDA--------------------P 131 (386)
T ss_dssp EEEECTTS----------SCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTC--------------------C
T ss_pred cEEECCCC----------CEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCc--------------------c
Confidence 49999999 6666654 367899999999888776522100 0
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
....+.-|..++++ |+|++|+++.. ++.|.++|+.+. +.+.++..- .. ..+.|.+ ...|++
T Consensus 132 r~~~g~~P~~~a~s--pDGk~lyVan~~~~~~VsVID~~t~------~vv~tI~v~--g~--~~~~P~g-----~~~~~~ 194 (386)
T 3sjl_D 132 RFLVGTYPWMTSLT--PDGKTLLFYQFSPAPAVGVVDLEGK------AFKRMLDVP--DC--YHIFPTA-----PDTFFM 194 (386)
T ss_dssp CCCBSCCGGGEEEC--TTSSEEEEEECSSSCEEEEEETTTT------EEEEEEECC--SE--EEEEEEE-----TTEEEE
T ss_pred ccccCCCCceEEEc--CCCCEEEEEEcCCCCeEEEEECCCC------cEEEEEECC--Cc--ceeecCC-----CceeEE
Confidence 00001114778888 99999888874 689999999977 677766431 11 2223443 156667
Q ss_pred EcCCC-EEEEECCCCCcceeee----CCCCCCeE-EEEEc-CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccc
Q 008363 253 AGHGG-LKFWDIRDPFRPLWDI----HPAPKFIY-GLDWL-PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQ 325 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~~~~~~----~~h~~~i~-~l~~s-p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~ 325 (568)
.+.|+ +.+.++....+..... ..-..++. ...|. ++|++++ .+.+|.|++.|+.... -+..
T Consensus 195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~------~~v~----- 262 (386)
T 3sjl_D 195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD------AKFL----- 262 (386)
T ss_dssp EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS------CEEC-----
T ss_pred ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc------ceee-----
Confidence 77777 8888887632322211 11122232 24664 6776555 5668999999984311 0011
Q ss_pred cceEEEe-------cCCCCEEEEEEecCCCEEEEEeC----------CCeEEEEEcCCCeeeccCCCCCcceeeeecccC
Q 008363 326 QGLHLVN-------CSSFAIWSVQVSRLTGMVAYCSA----------DGTVHRFQLTAKAVEKDHSRNRPMHFLCGSVTE 388 (568)
Q Consensus 326 ~~l~~~~-------~h~~~V~~l~~sp~~~~l~s~s~----------Dg~v~iwd~~~~~~~~~~~~~~~~~~~~~s~~~ 388 (568)
..+..+. ........++++++++.|+.... ...|.+.|+.+.++.+.......++ -..+++
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~--~lavs~ 340 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID--SINVSQ 340 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEEC--EEEECS
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcc--eEEECC
Confidence 1111000 01122234677999877777643 2579999999988776533222222 225777
Q ss_pred CCC-ceEE
Q 008363 389 DES-AITV 395 (568)
Q Consensus 389 ~~~-~i~~ 395 (568)
|+. .+.+
T Consensus 341 D~~~~ly~ 348 (386)
T 3sjl_D 341 DEKPLLYA 348 (386)
T ss_dssp SSSCEEEE
T ss_pred CCCeEEEE
Confidence 876 3444
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.30 E-value=9.2e-08 Score=97.12 Aligned_cols=142 Identities=13% Similarity=0.147 Sum_probs=77.5
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcce
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~ 270 (568)
++..+++++.||.|..||..++ +.+..+.. +.+.+..+..++ .++++++.|+ |+.||..++ ..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG------~~~W~~~~--~~~~s~p~~~~g------~~~v~~s~dg~l~a~d~~tG-~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG------SIKWTLKE--DPVLQVPTHVEE------PAFLPDPNDGSLYTLGSKNN-EGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC------CEEEEEEC--CCSCCCC-----------CCEEECTTTCCEEEC------CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCC------CEEEEecC--CCceecceEcCC------CEEEEeCCCCEEEEEECCCC-cee
Confidence 4679999999999999999877 66666655 455555555665 6788878888 999999877 444
Q ss_pred eeeCCCCC-CeE-EEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363 271 WDIHPAPK-FIY-GLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 271 ~~~~~h~~-~i~-~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~ 348 (568)
+.+..+.. .+. +..+. ++..|++++.|+.|+.||.. +|+.++ .+..+. ...++|++.
T Consensus 73 w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~--------tG~~~w--------~~~~~~----~~~~~p~~~ 131 (369)
T 2hz6_A 73 TKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLL--------TGEKQQ--------TLSSAF----ADSLSPSTS 131 (369)
T ss_dssp EECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-----------------------------------------
T ss_pred eeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECC--------CCcEEE--------EecCCC----cccccccCC
Confidence 44432211 010 01111 34567788889999999994 476542 333332 234567888
Q ss_pred EEEEEeCCCeEEEEEcCCCee
Q 008363 349 MVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
.|++++.|+.|+.||..+++.
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~ 152 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTREL 152 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSC
T ss_pred EEEEEecCCEEEEEECCCCCE
Confidence 999999999999999988764
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.29 E-value=8.2e-05 Score=78.36 Aligned_cols=231 Identities=6% Similarity=-0.009 Sum_probs=138.4
Q ss_pred cEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe-
Q 008363 123 GYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC- 200 (568)
Q Consensus 123 ~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs- 200 (568)
++|.+.. .++.|.+.|+.+.++...+.-+ .+ .. +..+++...|++.++++++
T Consensus 102 ~~lfVnd~~~~rVavIdl~t~~~~~ii~ip-----------------------~g--~~-phg~~~~~~p~~~~v~~~~~ 155 (595)
T 1fwx_A 102 RFLFMNDKANTRVARVRCDVMKCDAILEIP-----------------------NA--KG-IHGLRPQKWPRSNYVFCNGE 155 (595)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECS-----------------------SC--CS-EEEEEECCSSBCSEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCceEeeEEeCC-----------------------CC--CC-CcceeeeecCCCcEEEEecc
Confidence 4555544 4667999999999888754211 11 11 2556643226778887774
Q ss_pred -----------------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-------
Q 008363 201 -----------------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG------- 256 (568)
Q Consensus 201 -----------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d------- 256 (568)
.++.|.++|..+. +.+..+..-. ....++++|++ .++++++.+
T Consensus 156 ~~~p~~~dg~~l~~~~~~~~~vtvID~~t~------~v~~qI~Vgg-~pd~~~~spdG------k~~~vt~~~se~~~~i 222 (595)
T 1fwx_A 156 DETPLVNDGTNMEDVANYVNVFTAVDADKW------EVAWQVLVSG-NLDNCDADYEG------KWAFSTSYNSEKGMTL 222 (595)
T ss_dssp SCEESSCSSSSTTCGGGEEEEEEEEETTTT------EEEEEEEESS-CCCCEEECSSS------SEEEEEESCTTCCSSH
T ss_pred cccccCCCCcccccccccCceEEEEECCCC------eEEEEEEeCC-CccceEECCCC------CEEEEEecCcccCcch
Confidence 3467899998865 5555554322 35677889998 666666533
Q ss_pred --------------------------------CEEEEECCC--CCcc-eeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCc
Q 008363 257 --------------------------------GLKFWDIRD--PFRP-LWDIHPAPKFIYGLDWLPDPGCVILSFD-DGA 300 (568)
Q Consensus 257 --------------------------------~v~lwD~~~--~~~~-~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~ 300 (568)
+|.+.|.++ . .. +..+.. .....++.++|||+++++++. +.+
T Consensus 223 ~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~-~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~ 300 (595)
T 1fwx_A 223 PEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEAS-SLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPT 300 (595)
T ss_dssp HHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGC-CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSB
T ss_pred hhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCC-ceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCe
Confidence 267777776 3 22 222211 123467899999999998865 899
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC----------Ceee
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA----------KAVE 370 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~----------~~~~ 370 (568)
|.++|+.+...- ..|++- .....+..+. -....+.++|+|+|...++.-.|+.|.+||+.. ....
T Consensus 301 VsVid~~~~~~~--~~~~l~--~~~~v~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi 375 (595)
T 1fwx_A 301 VTVLDVTRFDAV--FYENAD--PRSAVVAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIK 375 (595)
T ss_dssp EEEEEGGGHHHH--HHSCCC--GGGGEEECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEE
T ss_pred EEEEECcccccc--cccccC--cccceEEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeE
Confidence 999999753100 001110 0001112222 224568899999995556677899999999976 2222
Q ss_pred ccCCCCCcceeeee----cccCCCCceEEcccC
Q 008363 371 KDHSRNRPMHFLCG----SVTEDESAITVNTPL 399 (568)
Q Consensus 371 ~~~~~~~~~~~~~~----s~~~~~~~i~~~~~~ 399 (568)
.....+..|-..+. .+++||..+.+....
T Consensus 376 ~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~ 408 (595)
T 1fwx_A 376 DKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF 408 (595)
T ss_dssp EEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred EEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence 22223333322333 557889888875433
No 230
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.21 E-value=7.6e-05 Score=76.43 Aligned_cols=98 Identities=10% Similarity=-0.011 Sum_probs=70.4
Q ss_pred CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------C
Q 008363 132 GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------H 201 (568)
Q Consensus 132 g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~ 201 (568)
+.|.++|..+++.+..+.. +. .| .+.++ |+|++|+++. .
T Consensus 99 ~~VsVID~~t~~vv~~I~v-------------------------G~---~P-gia~S--pDgk~lyVan~~~~~~~~G~~ 147 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDG-------------------------GF---LP-HPVAA--EDGSFFAQASTVFERIARGKR 147 (426)
T ss_dssp EEEEEEETTTTEEEEEEEE-------------------------CS---SC-EEEEC--TTSSCEEEEEEEEEETTEEEE
T ss_pred CeEEEEECCCCEEEEEEEC-------------------------CC---CC-ceEEC--CCCCEEEEEeccccccccCCC
Confidence 7999999999888877621 11 14 67877 8899888776 3
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEEEECCCCCccee
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKFWDIRDPFRPLW 271 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~lwD~~~~~~~~~ 271 (568)
++.|.++|..+. +.+..+.-. ......++|+|++ ++++.+.. ++ |.+.|+.+. +.+.
T Consensus 148 ~~~VsviD~~t~------~vv~~I~v~g~~r~~~g~~P~~~~~spDG------k~lyV~n~~~~~~VsVID~~t~-kvv~ 214 (426)
T 3c75_H 148 TDYVEVFDPVTF------LPIADIELPDAPRFLVGTYQWMNALTPDN------KNLLFYQFSPAPAVGVVDLEGK-TFDR 214 (426)
T ss_dssp EEEEEEECTTTC------CEEEEEEETTCCCCCBSCCGGGSEECTTS------SEEEEEECSSSCEEEEEETTTT-EEEE
T ss_pred CCEEEEEECCCC------cEEEEEECCCccccccCCCcceEEEcCCC------CEEEEEecCCCCeEEEEECCCC-eEEE
Confidence 678999999876 566555321 2345678999999 67776653 45 999999987 5554
Q ss_pred ee
Q 008363 272 DI 273 (568)
Q Consensus 272 ~~ 273 (568)
.+
T Consensus 215 ~I 216 (426)
T 3c75_H 215 ML 216 (426)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.20 E-value=0.00023 Score=78.11 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=100.7
Q ss_pred EEEEccCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGT-------------------VALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAV 235 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~-------------------I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v 235 (568)
.+++. +++.+|+.++.++. |..||..++ +.+..+.. |. .++...
T Consensus 239 ~~~~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~~~l~ 310 (689)
T 1yiq_A 239 SFAYD--PELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG------EYVWHYQTTPGDAWDYTATQHMILA 310 (689)
T ss_dssp CEEEE--TTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC------CEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred ceeEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC------ceeEeeecCCcccccccCCCCcEEE
Confidence 45666 66779999988764 999999987 56655543 32 112222
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCC-C---------------------------C---------
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHP-A---------------------------P--------- 277 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~-h---------------------------~--------- 277 (568)
....++. ...+++.++.++ |+++|..++ +.+..... . .
T Consensus 311 d~~~~G~---~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 311 ELPIDGK---PRKVLMQAPKNGFFYVIDRATG-ELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp EEEETTE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred eeccCCc---EEEEEEEECCCCeEEEEECCCC-CEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 2222440 012788888888 999999988 44421110 0 0
Q ss_pred C--CeEEEEEcCCCCEEEEEeC---------------------------------------------CCcEEEEEccccc
Q 008363 278 K--FIYGLDWLPDPGCVILSFD---------------------------------------------DGAMRIVSLLKAA 310 (568)
Q Consensus 278 ~--~i~~l~~sp~~~~l~s~~~---------------------------------------------dg~I~lwd~~~~~ 310 (568)
+ .-..++|+|+...+++... +|.|+.||+.
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~--- 463 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV--- 463 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT---
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC---
Confidence 0 0013788998888877632 3668888883
Q ss_pred cCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 311 YDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 311 ~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+|+.+ ..+..+ .++..-.+...+.+|++++.||.|+.||..+++..-
T Consensus 464 -----tG~~~--------W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw 510 (689)
T 1yiq_A 464 -----KQQAA--------WEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLW 510 (689)
T ss_dssp -----TTEEE--------EEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -----CCCeE--------eEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCccce
Confidence 46544 244333 233334566678899999999999999999997653
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.19 E-value=0.00039 Score=65.61 Aligned_cols=193 Identities=14% Similarity=0.160 Sum_probs=118.7
Q ss_pred eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.++..+.|... .+..+.|+ ++ .++.+.+.+| .|+++|+.+++.+..+...
T Consensus 32 ~vv~~~phd~~~ftqGL~~~-~~----------~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~---------------- 84 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYR-NG----------YFYESTGLNGRSSIRKVDIESGKTLQQIELG---------------- 84 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEE-TT----------EEEEEEEETTEEEEEEECTTTCCEEEEEECC----------------
T ss_pred EEEEEecCCCCcccceEEEE-CC----------EEEEECCCCCCceEEEEECCCCcEEEEEecC----------------
Confidence 45555677653 35678888 55 5677777666 8999999999988775221
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
....+-.++.. .+.+.++...++.+.+||..+. +.+.++..... =..++ +++.
T Consensus 85 ----------~~~FgeGit~~---g~~ly~ltw~~~~v~v~D~~t~------~~~~ti~~~~e-G~glt--~dg~----- 137 (262)
T 3nol_A 85 ----------KRYFGEGISDW---KDKIVGLTWKNGLGFVWNIRNL------RQVRSFNYDGE-GWGLT--HNDQ----- 137 (262)
T ss_dssp ----------TTCCEEEEEEE---TTEEEEEESSSSEEEEEETTTC------CEEEEEECSSC-CCCEE--ECSS-----
T ss_pred ----------CccceeEEEEe---CCEEEEEEeeCCEEEEEECccC------cEEEEEECCCC-ceEEe--cCCC-----
Confidence 01101234433 2345555556899999999876 77777754222 13343 4551
Q ss_pred cEEEEEcCCCEEEEECCCCCcceeeeCC----CC-CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 248 NVILTAGHGGLKFWDIRDPFRPLWDIHP----AP-KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 248 ~~las~s~d~v~lwD~~~~~~~~~~~~~----h~-~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
.+++|-+.+.|.++|..+. +.+..+.- .. ..++.+.|. +|+..+..-.++.|.+.|.. +|+.+
T Consensus 138 ~L~~SdGs~~i~~iDp~T~-~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~--------tG~V~-- 205 (262)
T 3nol_A 138 YLIMSDGTPVLRFLDPESL-TPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE--------TGKVT-- 205 (262)
T ss_dssp CEEECCSSSEEEEECTTTC-SEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT--------TCBEE--
T ss_pred EEEEECCCCeEEEEcCCCC-eEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC--------CCcEE--
Confidence 4555544333999999976 44444321 11 345678887 67544444458899999984 46553
Q ss_pred ccccceEEEec------------CCCCEEEEEEecCCCEEEEEeC
Q 008363 323 TKQQGLHLVNC------------SSFAIWSVQVSRLTGMVAYCSA 355 (568)
Q Consensus 323 ~~~~~l~~~~~------------h~~~V~~l~~sp~~~~l~s~s~ 355 (568)
..+.. -....+.|+|+|+++.|+..+.
T Consensus 206 ------~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 206 ------GIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ------EEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ------EEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 22221 1235689999999877766663
No 233
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.16 E-value=0.0023 Score=62.47 Aligned_cols=228 Identities=11% Similarity=0.044 Sum_probs=128.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
....++|.+++ .++++-..++.|..||... .....+ . . ...
T Consensus 33 ~pegia~~~~g----------~lyv~d~~~~~I~~~d~~g-~~~~~~-----------------~--------~--~~~- 73 (306)
T 2p4o_A 33 FLENLASAPDG----------TIFVTNHEVGEIVSITPDG-NQQIHA-----------------T--------V--EGK- 73 (306)
T ss_dssp CEEEEEECTTS----------CEEEEETTTTEEEEECTTC-CEEEEE-----------------E--------C--SSE-
T ss_pred CcceEEECCCC----------CEEEEeCCCCeEEEECCCC-ceEEEE-----------------e--------C--CCC-
Confidence 45589999988 6777766889999998765 222111 0 0 112
Q ss_pred ceEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-L 258 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v 258 (568)
+..+++. ++|+++++..... .|..+|..++.. ..+..+ ........++..+.+ .++++-...+ |
T Consensus 74 p~gia~~--~dG~l~vad~~~~~~~v~~~d~~~g~~----~~~~~~-~~~~~~~g~~~~~~~------~~~v~d~~~g~i 140 (306)
T 2p4o_A 74 VSGLAFT--SNGDLVATGWNADSIPVVSLVKSDGTV----ETLLTL-PDAIFLNGITPLSDT------QYLTADSYRGAI 140 (306)
T ss_dssp EEEEEEC--TTSCEEEEEECTTSCEEEEEECTTSCE----EEEEEC-TTCSCEEEEEESSSS------EEEEEETTTTEE
T ss_pred ceeEEEc--CCCcEEEEeccCCcceEEEEcCCCCeE----EEEEeC-CCccccCcccccCCC------cEEEEECCCCeE
Confidence 3788887 7888666654432 466666555411 222222 122334556655554 5566655566 9
Q ss_pred EEEECCCCCcceee---------eCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccce
Q 008363 259 KFWDIRDPFRPLWD---------IHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGL 328 (568)
Q Consensus 259 ~lwD~~~~~~~~~~---------~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l 328 (568)
.++|.......+.. ....-...+.| +|++.+|+.+. ..+.|..||+.. .|..- ..
T Consensus 141 ~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~-------~g~~~------~~ 205 (306)
T 2p4o_A 141 WLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS-------TDKPG------EP 205 (306)
T ss_dssp EEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT-------TSCBC------CC
T ss_pred EEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC-------CCCCC------cc
Confidence 99997653111110 01111234566 88888777764 478999999842 12210 01
Q ss_pred EEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc-CCCCCcceeeeeccc---CCCCceEEccc
Q 008363 329 HLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD-HSRNRPMHFLCGSVT---EDESAITVNTP 398 (568)
Q Consensus 329 ~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~-~~~~~~~~~~~~s~~---~~~~~i~~~~~ 398 (568)
..+... .....++++++|.++++....+.|.+++.. +..... ..........+.++. +++..|.+.+.
T Consensus 206 ~~~~~~-~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 206 EIFVEQ-TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EEEEES-CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred EEEecc-CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECC
Confidence 122111 234668999999887777778899999976 333211 011112223344555 66677766543
No 234
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.13 E-value=0.00015 Score=71.34 Aligned_cols=176 Identities=12% Similarity=0.017 Sum_probs=112.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
+.|.+++.++.|..+|.. ++...... .+...+ .++... +++ .|..|+.+
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~~~~--------------------------~~~~~~-~~~~~~--~~g-~l~vgt~~ 156 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKWRFK--------------------------TKKAIY-ATPIVS--EDG-TIYVGSND 156 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEEEEE--------------------------CSSCCC-SCCEEC--TTS-CEEEECTT
T ss_pred CEEEEEecCCEEEEEcCC-CCEEEEEc--------------------------CCCcee-eeeEEc--CCC-EEEEEcCC
Confidence 467778888888888887 55443321 111222 344433 455 57778888
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEE
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYG 282 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~ 282 (568)
+.|..||.. + ..+..+......+.++.+.+++ .+++++ ++|..+| .++ ..+..+......+.+
T Consensus 157 ~~l~~~d~~-g------~~~~~~~~~~~~~~~~~~d~~g------~l~v~t--~~l~~~d-~~g-~~~~~~~~~~~~~~~ 219 (330)
T 3hxj_A 157 NYLYAINPD-G------TEKWRFKTNDAITSAASIGKDG------TIYFGS--DKVYAIN-PDG-TEKWNFYAGYWTVTR 219 (330)
T ss_dssp SEEEEECTT-S------CEEEEEECSSCCCSCCEECTTC------CEEEES--SSEEEEC-TTS-CEEEEECCSSCCCSC
T ss_pred CEEEEECCC-C------CEeEEEecCCCceeeeEEcCCC------EEEEEe--CEEEEEC-CCC-cEEEEEccCCcceec
Confidence 999999987 5 4555555555667788887777 555544 5599999 555 555555555566788
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEE
Q 008363 283 LDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRF 362 (568)
Q Consensus 283 l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iw 362 (568)
+...++|. |.+++.++.|..+|. +|+.+ ..+......+.++.+.+++ .|..++.+|.|..+
T Consensus 220 ~~~~~~g~-l~v~t~~~gl~~~~~---------~g~~~--------~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 220 PAISEDGT-IYVTSLDGHLYAINP---------DGTEK--------WRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI 280 (330)
T ss_dssp CEECTTSC-EEEEETTTEEEEECT---------TSCEE--------EEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred eEECCCCe-EEEEcCCCeEEEECC---------CCCEe--------EEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence 88888875 666777888888875 23332 3333333333445555444 57778888899999
Q ss_pred EcC
Q 008363 363 QLT 365 (568)
Q Consensus 363 d~~ 365 (568)
|..
T Consensus 281 d~~ 283 (330)
T 3hxj_A 281 NPD 283 (330)
T ss_dssp CTT
T ss_pred CCC
Confidence 863
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.06 E-value=0.00019 Score=78.54 Aligned_cols=218 Identities=15% Similarity=0.136 Sum_probs=125.8
Q ss_pred cEEEEEeC------CCcEEEEECCCCceeeEEeccCCccCCCC-------ceEEEeec-ceecccccCCcCccceEEEEc
Q 008363 123 GYLAVLLG------NGSLEVWEVPLLRTMKAIYLSSMKEGTDP-------RFVKLEPV-FRCSMLKCGGTQSIPLTMEWS 188 (568)
Q Consensus 123 ~~las~s~------dg~V~iwd~~~~~~~~~l~~~~~~~~~~~-------~~v~~~~~-~~~~~~~~~h~~~V~~~v~~s 188 (568)
..+++++. +|.|+.||..+|+.+-.+....... ... .-...|+. ...... .+..... ..+++.
T Consensus 175 ~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~-~~~~~~~~~~~g~~~w~~~g~~~~~-~~g~~~w-~~~~~d 251 (677)
T 1kb0_A 175 GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP-SKPFEDESMKRAARTWDPSGKWWEA-GGGGTMW-DSMTFD 251 (677)
T ss_dssp TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT-TSCCSSHHHHHHHTTSCGGGCHHHH-CEECCCC-SCEEEE
T ss_pred CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc-cccccccccccccccccccCceeEe-CCCcccc-cceeEc
Confidence 35555553 7999999999998886654321100 000 00000100 000000 0111122 345666
Q ss_pred cCCCCCEEEEEeCCC-------------------eEEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEEEEccC
Q 008363 189 TSPPHDYLLAGCHDG-------------------TVALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAVSWAPA 240 (568)
Q Consensus 189 ~~~~g~~l~sgs~Dg-------------------~I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v~~~p~ 240 (568)
+++.+|+.++.++ +|..+|..++ +.+..+.. |. ....-+....+
T Consensus 252 --~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 252 --AELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG------KYKWHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp --TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC------CEEEEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred --CCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC------CEEEEEecCCCcccccccCCCcEEEecccC
Confidence 6677888887764 5888998877 55555432 32 11222222234
Q ss_pred CCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC-----------CCe------------------------EEEE
Q 008363 241 ESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP-----------KFI------------------------YGLD 284 (568)
Q Consensus 241 ~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~-----------~~i------------------------~~l~ 284 (568)
|. ...+++.++.++ |+++|..++ +.+..+.... .++ ..++
T Consensus 324 G~---~~~~l~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a 399 (677)
T 1kb0_A 324 GK---PRKVILHAPKNGFFFVLDRTNG-KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMS 399 (677)
T ss_dssp TE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCE
T ss_pred Cc---EeeEEEEECCCCEEEEEECCCC-CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCce
Confidence 30 013678888888 999999988 5554332110 001 1578
Q ss_pred EcCCCCEEEEEeCC-------------------------------------------CcEEEEEccccccCCCCCCCCcc
Q 008363 285 WLPDPGCVILSFDD-------------------------------------------GAMRIVSLLKAAYDVPATGKPFA 321 (568)
Q Consensus 285 ~sp~~~~l~s~~~d-------------------------------------------g~I~lwd~~~~~~~~~~~g~~~~ 321 (568)
|+|+...+++...+ |.|..||+. +|+.+
T Consensus 400 ~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~--------tG~~~- 470 (677)
T 1kb0_A 400 FNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPV--------AQKAA- 470 (677)
T ss_dssp EETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETT--------TTEEE-
T ss_pred EcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCC--------CCcEE-
Confidence 89998888876432 678888883 46544
Q ss_pred CccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 322 GTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 322 ~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..+. +..+++...+...+.++++++.||.+++||+.+++....
T Consensus 471 -------W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~ 513 (677)
T 1kb0_A 471 -------WSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWE 513 (677)
T ss_dssp -------EEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred -------eecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeee
Confidence 2333 333455556777888899999999999999999877644
No 236
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.06 E-value=0.003 Score=58.93 Aligned_cols=192 Identities=9% Similarity=0.076 Sum_probs=118.8
Q ss_pred eEEEeeccCC-ceeeEEEEccCCCCcccccCcccEEEEEeCCC--cEEEEECCCCceeeEEeccCCccCCCCceEEEeec
Q 008363 91 RVVLCLAHNG-KVAWDVKWKPYNAVDCKCKQRLGYLAVLLGNG--SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPV 167 (568)
Q Consensus 91 ~~~~~~~h~~-~~v~~v~~sp~~~~~~~~~~~~~~las~s~dg--~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~ 167 (568)
.++..+.|+. ..+..+.|++ + .++.+.+.+| .|+++|+.+++.+..+...
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~----------~LyestG~~g~S~v~~vD~~tgkv~~~~~l~---------------- 62 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-G----------HLYESTGETGRSSVRKVDLETGRILQRAEVP---------------- 62 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-T----------EEEEEECCTTSCEEEEEETTTCCEEEEEECC----------------
T ss_pred EEEEEcCCCCccccccEEEEC-C----------EEEEECCCCCCceEEEEECCCCCEEEEEeCC----------------
Confidence 4555567765 3455788887 4 4666666654 8999999999988775221
Q ss_pred ceecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCC
Q 008363 168 FRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSA 247 (568)
Q Consensus 168 ~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~ 247 (568)
.+. .+-.++.. .+.+.+....++.+.+||..+. +.+.++.... .=..++ +++.
T Consensus 63 --------~~~--fgeGi~~~---~~~ly~ltw~~~~v~v~D~~tl------~~~~ti~~~~-~Gwglt--~dg~----- 115 (243)
T 3mbr_X 63 --------PPY--FGAGIVAW---RDRLIQLTWRNHEGFVYDLATL------TPRARFRYPG-EGWALT--SDDS----- 115 (243)
T ss_dssp --------TTC--CEEEEEEE---TTEEEEEESSSSEEEEEETTTT------EEEEEEECSS-CCCEEE--ECSS-----
T ss_pred --------CCc--ceeEEEEe---CCEEEEEEeeCCEEEEEECCcC------cEEEEEeCCC-CceEEe--eCCC-----
Confidence 111 01334433 3355666667899999999876 7777775432 224554 4441
Q ss_pred cEEEEEcCCCEEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccC
Q 008363 248 NVILTAGHGGLKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 248 ~~las~s~d~v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
.+++|-+.+.|.++|..+. +.+..+.- +. ..++.+.|. +|+..+..-.+..|.+.|.+ +|+.+
T Consensus 116 ~L~vSdgs~~l~~iDp~t~-~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~--------tG~V~-- 183 (243)
T 3mbr_X 116 HLYMSDGTAVIRKLDPDTL-QQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPA--------SGKVV-- 183 (243)
T ss_dssp CEEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTT--------TCBEE--
T ss_pred EEEEECCCCeEEEEeCCCC-eEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECC--------CCCEE--
Confidence 5666655333999999976 44444432 11 345677776 56544444457789999984 46553
Q ss_pred ccccceEEEe-------------cCCCCEEEEEEecCCCEEEEEe
Q 008363 323 TKQQGLHLVN-------------CSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 323 ~~~~~l~~~~-------------~h~~~V~~l~~sp~~~~l~s~s 354 (568)
..+. .-....+.|+|+|++..|+..+
T Consensus 184 ------~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 184 ------AWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ------EEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ------EEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 2222 1123678999999876666655
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.04 E-value=0.00019 Score=70.63 Aligned_cols=175 Identities=9% Similarity=0.006 Sum_probs=108.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCCC
Q 008363 124 YLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDG 203 (568)
Q Consensus 124 ~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg 203 (568)
.|..++.++.|..||.. ++.+..+. .....+ .++... +++. |..++ +
T Consensus 149 ~l~vgt~~~~l~~~d~~-g~~~~~~~--------------------------~~~~~~-~~~~~d--~~g~-l~v~t--~ 195 (330)
T 3hxj_A 149 TIYVGSNDNYLYAINPD-GTEKWRFK--------------------------TNDAIT-SAASIG--KDGT-IYFGS--D 195 (330)
T ss_dssp CEEEECTTSEEEEECTT-SCEEEEEE--------------------------CSSCCC-SCCEEC--TTCC-EEEES--S
T ss_pred EEEEEcCCCEEEEECCC-CCEeEEEe--------------------------cCCCce-eeeEEc--CCCE-EEEEe--C
Confidence 46667778888888887 66554431 112223 445543 5664 55555 7
Q ss_pred eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcceeeeCCCCCCeEEE
Q 008363 204 TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPLWDIHPAPKFIYGL 283 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~~~~~~h~~~i~~l 283 (568)
.|..|| .++ ..+..+......+.++...+++ .+++.+..++|..+|.. + ..+..+......+..+
T Consensus 196 ~l~~~d-~~g------~~~~~~~~~~~~~~~~~~~~~g------~l~v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~~ 260 (330)
T 3hxj_A 196 KVYAIN-PDG------TEKWNFYAGYWTVTRPAISEDG------TIYVTSLDGHLYAINPD-G-TEKWRFKTGKRIESSP 260 (330)
T ss_dssp SEEEEC-TTS------CEEEEECCSSCCCSCCEECTTS------CEEEEETTTEEEEECTT-S-CEEEEEECSSCCCSCC
T ss_pred EEEEEC-CCC------cEEEEEccCCcceeceEECCCC------eEEEEcCCCeEEEECCC-C-CEeEEeeCCCCccccc
Confidence 889999 544 4455555555668888888887 56655444458888753 3 4444444333334456
Q ss_pred EEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 284 DWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 284 ~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
.+.+++ .|.+++.+|.|..+|. +|+.+ ..+......+.++...+++. |..++.+|.+++..
T Consensus 261 ~~~~~g-~l~v~t~~ggl~~~d~---------~g~~~--------~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~ 321 (330)
T 3hxj_A 261 VIGNTD-TIYFGSYDGHLYAINP---------DGTEK--------WNFETGSWIIATPVIDENGT-IYFGTRNGKFYALF 321 (330)
T ss_dssp EECTTS-CEEEECTTCEEEEECT---------TSCEE--------EEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEE
T ss_pred eEcCCC-eEEEecCCCCEEEECC---------CCcEE--------EEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEe
Confidence 666565 4777888888999985 24332 34444445566777766665 66688899999987
Q ss_pred cC
Q 008363 364 LT 365 (568)
Q Consensus 364 ~~ 365 (568)
..
T Consensus 322 ~~ 323 (330)
T 3hxj_A 322 NL 323 (330)
T ss_dssp C-
T ss_pred cc
Confidence 74
No 238
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.99 E-value=0.0014 Score=64.49 Aligned_cols=209 Identities=12% Similarity=-0.008 Sum_probs=118.1
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecc----cccCCcCc
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSM----LKCGGTQS 180 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~----~~~~h~~~ 180 (568)
+++|.+++ .+|.++..++.|..|+..++... .+...... +....|.. ........
T Consensus 23 ~i~~d~~g----------~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~ 81 (322)
T 2fp8_A 23 SFTFDSTN----------KGFYTSVQDGRVIKYEGPNSGFV-DFAYASPY----------WNKAFCENSTDAEKRPLCGR 81 (322)
T ss_dssp CEECCTTC----------SSEEEECTTSEEEEECCTTTCEE-EEEESCTT----------CCHHHHTTCCCGGGHHHHCC
T ss_pred EEEEcCCC----------CEEEEEcCCCeEEEECCCCCceE-EEeccccc----------ccccccccccchhccccCCC
Confidence 78899988 67888888999999988764332 22110000 00000000 00000122
Q ss_pred cceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeC-CCCCeeEEEEcc-CCCCCCCCcEEEEEcC-
Q 008363 181 IPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSA-DTLPIRAVSWAP-AESDSDSANVILTAGH- 255 (568)
Q Consensus 181 V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~-h~~~V~~v~~~p-~~~~~~~~~~las~s~- 255 (568)
|..+++. + ++ .|+++...+.|..+|..++.. ..+. ...+ .......+++.+ ++ +++++...
T Consensus 82 -p~gi~~~--~~~g-~l~v~d~~~~i~~~d~~~g~~----~~~~~~~~~~~~~~p~~i~~d~~~G------~l~v~d~~~ 147 (322)
T 2fp8_A 82 -TYDISYN--LQNN-QLYIVDCYYHLSVVGSEGGHA----TQLATSVDGVPFKWLYAVTVDQRTG------IVYFTDVST 147 (322)
T ss_dssp -EEEEEEE--TTTT-EEEEEETTTEEEEECTTCEEC----EEEESEETTEECSCEEEEEECTTTC------CEEEEESCS
T ss_pred -CceEEEc--CCCC-cEEEEECCCCEEEEeCCCCEE----EEecccCCCCcccccceEEEecCCC------EEEEECCcc
Confidence 3778877 6 44 566665556688888664311 1111 1111 123478899999 88 77776543
Q ss_pred ----------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCC
Q 008363 256 ----------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATG 317 (568)
Q Consensus 256 ----------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g 317 (568)
++ |..||..+. ....... .-...+.|+|+|++++|+.+ ...+.|..|++.... .+
T Consensus 148 ~~~~~~~~~~~~~~~~~g~v~~~d~~~~-~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~-----~~ 220 (322)
T 2fp8_A 148 LYDDRGVQQIMDTSDKTGRLIKYDPSTK-ETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPK-----KG 220 (322)
T ss_dssp SCCTTCHHHHHHHTCCCEEEEEEETTTT-EEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTT-----TT
T ss_pred cccccccceehcccCCCceEEEEeCCCC-EEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCc-----CC
Confidence 25 888888655 2211111 11224679999999977766 457899999984210 11
Q ss_pred CCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeC----------CCeEEEEEcC
Q 008363 318 KPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSA----------DGTVHRFQLT 365 (568)
Q Consensus 318 ~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~----------Dg~v~iwd~~ 365 (568)
. ...+....+ ...+++.++|.+.++... .+.|..++..
T Consensus 221 ~---------~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 221 T---------AEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp C---------EEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred c---------cceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC
Confidence 1 112221223 688999999987776654 4567777764
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=97.94 E-value=0.00028 Score=77.29 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCC
Q 008363 257 G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS 335 (568)
Q Consensus 257 ~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~ 335 (568)
+ |..||+.++ +.++.+. +...+....+...+..+++++.||.|++||.+ +|+.+ ..+....
T Consensus 457 g~l~A~D~~tG-~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~--------tG~~l--------w~~~~~~ 518 (677)
T 1kb0_A 457 GRLLAWDPVAQ-KAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA--------TGEKL--------WEAPTGT 518 (677)
T ss_dssp EEEEEEETTTT-EEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETT--------TCCEE--------EEEECSS
T ss_pred cEEEEEeCCCC-cEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECC--------CCcee--------eeeeCCC
Confidence 5 999999988 6666654 23334455566778889999999999999994 57654 4554332
Q ss_pred -CCEEEEEEecCCC-EEEE
Q 008363 336 -FAIWSVQVSRLTG-MVAY 352 (568)
Q Consensus 336 -~~V~~l~~sp~~~-~l~s 352 (568)
....-+.|..+|+ ++++
T Consensus 519 ~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 519 GVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp CCCSCCEEEEETTEEEEEE
T ss_pred CcccCCEEEEeCCEEEEEE
Confidence 2223355677885 4444
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=97.94 E-value=0.0073 Score=57.39 Aligned_cols=155 Identities=5% Similarity=-0.021 Sum_probs=98.1
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..++|+ +++. ++++-..++.|..+++... .....+.........|++++.+ ..++++-...+ |.+
T Consensus 39 ~gi~~d--~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~p~~ia~d~~~-----~~lyv~d~~~~~I~~ 105 (267)
T 1npe_A 39 IGLAFD--CVDKVVYWTDISEPSIGRASLHGG------EPTTIIRQDLGSPEGIALDHLG-----RTIFWTDSQLDRIEV 105 (267)
T ss_dssp EEEEEE--TTTTEEEEEETTTTEEEEEESSSC------CCEEEECTTCCCEEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEEEe--cCCCEEEEEECCCCEEEEEecCCC------CcEEEEECCCCCccEEEEEecC-----CeEEEEECCCCEEEE
Confidence 788888 6444 4455556789999998754 2222332333568899999965 15555555556 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSF 336 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~ 336 (568)
+|+..... .............++++|++..|+.+.. .+.|..+++. |... ..+. ..-.
T Consensus 106 ~~~~g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d---------g~~~--------~~~~~~~~~ 167 (267)
T 1npe_A 106 AKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD---------GTNR--------RILAQDNLG 167 (267)
T ss_dssp EETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT---------SCCC--------EEEECTTCS
T ss_pred EEcCCCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC---------CCCc--------EEEEECCCC
Confidence 99875422 2222222245689999997776666654 3688888873 3221 1221 2234
Q ss_pred CEEEEEEecCCCEEE-EEeCCCeEEEEEcCCCe
Q 008363 337 AIWSVQVSRLTGMVA-YCSADGTVHRFQLTAKA 368 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~-s~s~Dg~v~iwd~~~~~ 368 (568)
....+++++++..|. +-...+.|.++++....
T Consensus 168 ~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 168 LPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred CCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 568999999876554 44566899999997543
No 241
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.93 E-value=0.0015 Score=61.58 Aligned_cols=189 Identities=8% Similarity=0.066 Sum_probs=117.9
Q ss_pred eEEEeeccCCc-eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecce
Q 008363 91 RVVLCLAHNGK-VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFR 169 (568)
Q Consensus 91 ~~~~~~~h~~~-~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 169 (568)
.++..+.|... .+..+.|+. + .++.+.+.+|.|+++|+.+++.+..+ ..
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~----------~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~------------------ 93 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-G----------HFFESTGHQGTLRQLSLESAQPVWME-RL------------------ 93 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-T----------EEEEEETTTTEEEECCSSCSSCSEEE-EC------------------
T ss_pred EEEEEEcCCCccccceEEEEC-C----------EEEEEcCCCCEEEEEECCCCcEEeEE-CC------------------
Confidence 45555667653 345788874 4 57888888899999999998887664 11
Q ss_pred ecccccCCcCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcE
Q 008363 170 CSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANV 249 (568)
Q Consensus 170 ~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~ 249 (568)
.. ..+-.++.. .+.+.++...++.+.+||..+. +.+.++..- ..-..++ +++ ..
T Consensus 94 ------~~--~FgeGit~~---g~~Ly~ltw~~~~v~V~D~~Tl------~~~~ti~~~-~eGwGLt--~Dg------~~ 147 (268)
T 3nok_A 94 ------GN--IFAEGLASD---GERLYQLTWTEGLLFTWSGMPP------QRERTTRYS-GEGWGLC--YWN------GK 147 (268)
T ss_dssp ------TT--CCEEEEEEC---SSCEEEEESSSCEEEEEETTTT------EEEEEEECS-SCCCCEE--EET------TE
T ss_pred ------CC--cceeEEEEe---CCEEEEEEccCCEEEEEECCcC------cEEEEEeCC-CceeEEe--cCC------CE
Confidence 10 001235533 2356666667899999999876 777777542 2223444 445 34
Q ss_pred EEEEcCCC-EEEEECCCCCcceeeeCC--CC---CCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccC
Q 008363 250 ILTAGHGG-LKFWDIRDPFRPLWDIHP--AP---KFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 250 las~s~d~-v~lwD~~~~~~~~~~~~~--h~---~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
|+.+..+. |.++|..+. +.+..+.- +. ..++.+.|. +|+ |++.. .++.|.+.|.. +|+.+
T Consensus 148 L~vSdGs~~l~~iDp~T~-~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~--------TG~V~-- 214 (268)
T 3nok_A 148 LVRSDGGTMLTFHEPDGF-ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLEIDPA--------TGTVV-- 214 (268)
T ss_dssp EEEECSSSEEEEECTTTC-CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEEECTT--------TCBEE--
T ss_pred EEEECCCCEEEEEcCCCC-eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEEEeCC--------CCcEE--
Confidence 44444445 999999876 44444331 22 245778887 675 55544 57899999984 46554
Q ss_pred ccccceEEEec-------------CCCCEEEEEEecCCCEEEEEe
Q 008363 323 TKQQGLHLVNC-------------SSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 323 ~~~~~l~~~~~-------------h~~~V~~l~~sp~~~~l~s~s 354 (568)
..+.. -....+.|+|+|++..|+..+
T Consensus 215 ------~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 215 ------GVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ------EEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred ------EEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 22221 124678999999875554444
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.86 E-value=0.0012 Score=66.52 Aligned_cols=142 Identities=11% Similarity=0.099 Sum_probs=88.8
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCC----------e-eEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLP----------I-RAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~----------V-~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
+..+++++.+|.|..+|..++ +.+..+...... + ..... .+ ..+..++.++ |..
T Consensus 188 ~~~v~~g~~~g~l~~~d~~tG------~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~-------~~v~~~~~~g~l~~ 253 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLMEQG------QMIWQQRISQATGSTEIDRLSDVDTTPVV-VN-------GVVFALAYNGNLTA 253 (376)
T ss_dssp TTEEEECCTTTEEEEEETTTC------CEEEEEECCC-----------CCCCCCEE-ET-------TEEEEECTTSCEEE
T ss_pred CCEEEEEcCCCEEEEEECCCC------cEEEEEecccCCCCcccccccccCCCcEE-EC-------CEEEEEecCcEEEE
Confidence 357888888999999999876 444444321100 1 01111 12 3566666666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec-CCCCEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC-SSFAIW 339 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~-h~~~V~ 339 (568)
+|..++ ..++.... .....+... +..|++++.++.|..+|.. +|+.+ ..... ....+.
T Consensus 254 ~d~~tG-~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~--------tG~~~--------w~~~~~~~~~~~ 312 (376)
T 3q7m_A 254 LDLRSG-QIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTID--------GGVTL--------WTQSDLLHRLLT 312 (376)
T ss_dssp EETTTC-CEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETT--------TCCEE--------EEECTTTTSCCC
T ss_pred EECCCC-cEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECC--------CCcEE--------EeecccCCCccc
Confidence 999987 55655542 234444443 6778888899999999984 46543 23321 111222
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 340 SVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+.. .+..|+.++.+|.|.++|..+++..-
T Consensus 313 ~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 313 SPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp CCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 2222 25778899999999999998887653
No 243
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=97.85 E-value=0.0022 Score=64.37 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=109.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..|++++.++.|..+|..+++.+-..... +... ...... +..+++++.+
T Consensus 104 ~~v~v~~~~g~l~a~d~~tG~~~W~~~~~------------------------~~~~---~~p~~~----~~~v~v~~~~ 152 (376)
T 3q7m_A 104 GHVYIGSEKAQVYALNTSDGTVAWQTKVA------------------------GEAL---SRPVVS----DGLVLIHTSN 152 (376)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECS------------------------SCCC---SCCEEE----TTEEEEECTT
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEEeCC------------------------CceE---cCCEEE----CCEEEEEcCC
Confidence 47888889999999999998876443111 0001 111111 3588889999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCe-----eEEEEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPI-----RAVSWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPA 276 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-----~~v~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h 276 (568)
|.|..+|..++ +.+..+....... ...... + ..++.+..++ |..+|..++ ..++.....
T Consensus 153 g~l~~~d~~tG------~~~W~~~~~~~~~~~~~~~~~~~~-~-------~~v~~g~~~g~l~~~d~~tG-~~~w~~~~~ 217 (376)
T 3q7m_A 153 GQLQALNEADG------AVKWTVNLDMPSLSLRGESAPTTA-F-------GAAVVGGDNGRVSAVLMEQG-QMIWQQRIS 217 (376)
T ss_dssp SEEEEEETTTC------CEEEEEECCC-----CCCCCCEEE-T-------TEEEECCTTTEEEEEETTTC-CEEEEEECC
T ss_pred CeEEEEECCCC------cEEEEEeCCCCceeecCCCCcEEE-C-------CEEEEEcCCCEEEEEECCCC-cEEEEEecc
Confidence 99999999877 5554443322111 112222 3 3566677777 999999887 555544321
Q ss_pred CC--C--eE---EEEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCC
Q 008363 277 PK--F--IY---GLDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLT 347 (568)
Q Consensus 277 ~~--~--i~---~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~ 347 (568)
.. . +. .+.-.| .+..+++++.++.|..+|.. +|+.++ ... ......+.. ++
T Consensus 218 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~--------tG~~~w--------~~~--~~~~~~~~~--~~ 277 (376)
T 3q7m_A 218 QATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLR--------SGQIMW--------KRE--LGSVNDFIV--DG 277 (376)
T ss_dssp C-----------CCCCCCEEETTEEEEECTTSCEEEEETT--------TCCEEE--------EEC--CCCEEEEEE--ET
T ss_pred cCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECC--------CCcEEe--------ecc--CCCCCCceE--EC
Confidence 10 0 00 011111 25678888889999999984 465532 222 223344444 46
Q ss_pred CEEEEEeCCCeEEEEEcCCCeee
Q 008363 348 GMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 348 ~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
..|+.++.++.|..+|..+++..
T Consensus 278 ~~l~~~~~~g~l~~~d~~tG~~~ 300 (376)
T 3q7m_A 278 NRIYLVDQNDRVMALTIDGGVTL 300 (376)
T ss_dssp TEEEEEETTCCEEEEETTTCCEE
T ss_pred CEEEEEcCCCeEEEEECCCCcEE
Confidence 77888889999999999887654
No 244
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.82 E-value=0.0032 Score=69.85 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=90.4
Q ss_pred eeeEEEEc-cCCCCcccccCcccEEEEEeC-CC----cEEEEECCCC-ceeeEEeccCCccCCCCceEEEeecceecccc
Q 008363 102 VAWDVKWK-PYNAVDCKCKQRLGYLAVLLG-NG----SLEVWEVPLL-RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLK 174 (568)
Q Consensus 102 ~v~~v~~s-p~~~~~~~~~~~~~~las~s~-dg----~V~iwd~~~~-~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (568)
.+...+|| |+| ++||.+.. +| .|+++|+.++ +.+... +
T Consensus 175 ~~~~~~~S~PDG----------~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~---------------~---------- 219 (751)
T 2xe4_A 175 DVMEVKPAPPEH----------DLVAFSVDMSGNEVYTIEFKRISDPSQTIADK---------------V---------- 219 (751)
T ss_dssp EEEEEEECTTTT----------CEEEEEEESSSSSCEEEEEEETTCTTCCCCCC---------------E----------
T ss_pred EEeeeEecCCCC----------CEEEEEEeCCCCceEEEEEEECCCCCEeCCcc---------------c----------
Confidence 34578999 999 67775543 33 4999999987 532110 0
Q ss_pred cCCcCccceEEEEccCCCCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCc
Q 008363 175 CGGTQSIPLTMEWSTSPPHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~ 248 (568)
. ... ..+.|+ |||+.|+....| ..|.++++.++. ......+. .+......+.|+|++ +
T Consensus 220 ~---~~~-~~~~Ws--pDg~~l~y~~~d~~~~~~~v~~~~lgt~~----~~~~lv~~~~~~~~~~~~~~SpDg------~ 283 (751)
T 2xe4_A 220 S---GTN-GEIVWG--PDHTSLFYVTKDETLRENKVWRHVMGKLQ----SEDVCLYEEHNPLFSAFMYKAADT------N 283 (751)
T ss_dssp E---EEC-SCCEEC--SSTTEEEEEEECTTCCEEEEEEEETTSCG----GGCEEEEECCCTTCEEEEEECTTS------S
T ss_pred c---Cce-eeEEEe--cCCCEEEEEEECCCCCCCEEEEEECCCCc----hhcEEEEecCCCceEEEEEECCCC------C
Confidence 0 012 567899 888887777665 257777876541 12223333 233456788999999 6
Q ss_pred EEEEEc-C--CC-EEEEECCCCCcce--eee-CCCCCCeEEEEEcCCCCEEEEEeCC--C--cEEEEEc
Q 008363 249 VILTAG-H--GG-LKFWDIRDPFRPL--WDI-HPAPKFIYGLDWLPDPGCVILSFDD--G--AMRIVSL 306 (568)
Q Consensus 249 ~las~s-~--d~-v~lwD~~~~~~~~--~~~-~~h~~~i~~l~~sp~~~~l~s~~~d--g--~I~lwd~ 306 (568)
+|+..+ . .. |.++|+.++.... ..+ ........++.|+..+.+++.+..+ + .|..+|+
T Consensus 284 ~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~ 352 (751)
T 2xe4_A 284 TLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPR 352 (751)
T ss_dssp EEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEET
T ss_pred EEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcC
Confidence 665443 2 23 9999998753222 333 2334555667665444444444433 3 4556665
No 245
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=97.81 E-value=0.001 Score=66.87 Aligned_cols=90 Identities=8% Similarity=-0.119 Sum_probs=66.1
Q ss_pred cEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEe----------CC
Q 008363 133 SLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGC----------HD 202 (568)
Q Consensus 133 ~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs----------~D 202 (568)
+|.++|..+++.+.++.. +.. | .+.++ |++++++++. .+
T Consensus 47 ~vsvID~~t~~v~~~i~v-------------------------G~~---P-~i~~s--pDg~~lyVan~~~~r~~~G~~~ 95 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLG-------------------------AFL---S-LAVAG--HSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp EEEEEETTTTEEEEEEEE-------------------------CTT---C-EEEEC--TTSSCEEEEEEEETTTTSSSEE
T ss_pred eEEEEECCCCeEEEEEeC-------------------------CCC---C-ceEEC--CCCCEEEEEcccccccccCCCC
Confidence 788999999888877622 211 4 57777 8898888886 37
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCC-------CCCeeEEEEccCCCCCCCCcEEEEEcC--CC-EEE--EECCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSAD-------TLPIRAVSWAPAESDSDSANVILTAGH--GG-LKF--WDIRD 265 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h-------~~~V~~v~~~p~~~~~~~~~~las~s~--d~-v~l--wD~~~ 265 (568)
++|.+||+.+. +.+..+..+ ......++|+|++ ++++.+.. +. |.+ +|+.+
T Consensus 96 ~~VsviD~~T~------~vv~~I~v~~~~~~~~g~~P~~ia~SpDG------k~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 96 DYVEVFDPVTF------LPIADIELPDAPRFSVGPRVHIIGNCASS------ACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEECTTTC------CEEEEEEETTSCSCCBSCCTTSEEECTTS------SCEEEEECSSSCEEEEEETTTEE
T ss_pred CEEEEEECCCC------CEEEEEECCCccccccCCCcceEEEcCCC------CEEEEEccCCCCeEEEEEEchhh
Confidence 89999999977 677776533 1246789999999 67776653 34 888 99865
No 246
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=97.81 E-value=0.00058 Score=74.94 Aligned_cols=198 Identities=10% Similarity=0.084 Sum_probs=118.3
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
..|++++.++.|.-+|..+|+.+-.+....... ...... ..+...+.. .+..|++++.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~-----------------~~~~~~~~~~~~~~~~----~~g~v~v~~~ 129 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH-----------------RAGEACCDAVNRGVAV----WKGKVYVGVL 129 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGG-----------------GGGGCTTCSCCCCCEE----ETTEEEEECT
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc-----------------ccccccccCCCCccEE----ECCEEEEEcc
Confidence 578888889999999999988776542211000 000000 000012222 2458899999
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCC--CCCeeEEEEcc---CCCCCCCCcEEEEEc-----CCC-EEEEECCCCCcce
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAP---AESDSDSANVILTAG-----HGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p---~~~~~~~~~~las~s-----~d~-v~lwD~~~~~~~~ 270 (568)
||.|..+|..++ +.+..+... ......+..+| ++ .+++..+ .++ |+.||..++ +.+
T Consensus 130 dg~l~AlDa~TG------~~~W~~~~~~~~~~~~~~~~sP~v~~g------~v~vg~~~~~~~~~g~v~a~D~~tG-~~~ 196 (689)
T 1yiq_A 130 DGRLEAIDAKTG------QRAWSVDTRADHKRSYTITGAPRVVNG------KVVIGNGGAEFGVRGYVTAYDAETG-KEA 196 (689)
T ss_dssp TSEEEEEETTTC------CEEEEEECCSCTTSCCBCCSCCEEETT------EEEECCBCTTTCCBCEEEEEETTTC-CEE
T ss_pred CCEEEEEECCCC------CEeeeecCcCCCCCCccccCCcEEECC------EEEEEeCCCccCCCCEEEEEECCCC-cEE
Confidence 999999999887 555554331 11111111112 43 4444332 256 999999988 666
Q ss_pred eeeCCC---C----------------------------CCeEEEEEcCCCCEEEEEeCCCc-------------------
Q 008363 271 WDIHPA---P----------------------------KFIYGLDWLPDPGCVILSFDDGA------------------- 300 (568)
Q Consensus 271 ~~~~~h---~----------------------------~~i~~l~~sp~~~~l~s~~~dg~------------------- 300 (568)
+.+... . .....++++|+...|++++.++.
T Consensus 197 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~ 276 (689)
T 1yiq_A 197 WRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSS 276 (689)
T ss_dssp EEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTE
T ss_pred EEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 554310 0 00125788998899999887763
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEEcCCCe
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-------FAIWSVQVSRLTG---MVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-------~~V~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~ 368 (568)
|..||.+ +|+.++ .+.. |. .++.......+|+ +|+.++.+|.|+++|..+++
T Consensus 277 v~AlD~~--------TG~~~W--------~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 277 IVAVNAD--------TGEYVW--------HYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp EEEEETT--------TCCEEE--------EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEEEcc--------CCceeE--------eeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 8999984 576653 3332 21 2222223333554 78999999999999999987
Q ss_pred ee
Q 008363 369 VE 370 (568)
Q Consensus 369 ~~ 370 (568)
+.
T Consensus 341 ~l 342 (689)
T 1yiq_A 341 LL 342 (689)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 247
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.79 E-value=0.012 Score=55.51 Aligned_cols=200 Identities=11% Similarity=0.131 Sum_probs=119.3
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
-+..++|+|++. .++++...++.|...|.. ++.++.+.. .+. ...
T Consensus 28 ~lSGla~~~~~~---------~L~aV~d~~~~I~~ld~~-g~v~~~i~l------------------------~g~-~D~ 72 (255)
T 3qqz_A 28 NISSLTWSAQSN---------TLFSTINKPAAIVEMTTN-GDLIRTIPL------------------------DFV-KDL 72 (255)
T ss_dssp CEEEEEEETTTT---------EEEEEEETTEEEEEEETT-CCEEEEEEC------------------------SSC-SSE
T ss_pred CcceeEEeCCCC---------EEEEEECCCCeEEEEeCC-CCEEEEEec------------------------CCC-CCh
Confidence 356999999873 566668888899999988 676665411 111 222
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee------CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS------ADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~------~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
-.|++. +++.++++.-.++.+.++++..... ...+.... ........|+|+|.+ +.|.++..
T Consensus 73 -EGIa~~--~~g~~~vs~E~~~~l~~~~v~~~~~---i~~~~~~~~~~~~~~~N~g~EGLA~d~~~------~~L~va~E 140 (255)
T 3qqz_A 73 -ETIEYI--GDNQFVISDERDYAIYVISLTPNSE---VKILKKIKIPLQESPTNCGFEGLAYSRQD------HTFWFFKE 140 (255)
T ss_dssp -EEEEEC--STTEEEEEETTTTEEEEEEECTTCC---EEEEEEEECCCSSCCCSSCCEEEEEETTT------TEEEEEEE
T ss_pred -HHeEEe--CCCEEEEEECCCCcEEEEEcCCCCe---eeeeeeeccccccccccCCcceEEEeCCC------CEEEEEEC
Confidence 567876 7776666655678899998875521 11122221 234457899999998 55555555
Q ss_pred CC-EEEEECCC--CCcceeee-------CCCCCCeEEEEEcCCCCEEE-EEeCCCcEEEEEccccccCCCCCCCCccCcc
Q 008363 256 GG-LKFWDIRD--PFRPLWDI-------HPAPKFIYGLDWLPDPGCVI-LSFDDGAMRIVSLLKAAYDVPATGKPFAGTK 324 (568)
Q Consensus 256 d~-v~lwD~~~--~~~~~~~~-------~~h~~~i~~l~~sp~~~~l~-s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~ 324 (568)
.. ..+|.+.. ....+..+ ..+-..+.+++++|....|+ .+.....|..+|. .|+++
T Consensus 141 ~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~---------~g~~~---- 207 (255)
T 3qqz_A 141 KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTL---------VGEVI---- 207 (255)
T ss_dssp SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECT---------TCCEE----
T ss_pred cCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcC---------CCCEE----
Confidence 43 45554431 10112211 11233568999999655554 4555788888887 35442
Q ss_pred ccceEEEe-cC------CCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 325 QQGLHLVN-CS------SFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 325 ~~~l~~~~-~h------~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
....+. +. -..--.|+|.++|++.++ +.-..+++|.-
T Consensus 208 --~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 208 --GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp --EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred --EEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 122232 11 124578999999985555 66666666643
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.72 E-value=0.0011 Score=69.79 Aligned_cols=147 Identities=9% Similarity=-0.049 Sum_probs=85.7
Q ss_pred eEEEEEccCCCCCCCCce-eEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCC-----------cc
Q 008363 204 TVALWKFVASDSSIDSRP-LLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPF-----------RP 269 (568)
Q Consensus 204 ~I~iwd~~~~~~~~~~~~-~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~-----------~~ 269 (568)
.|.+.|..+.. ... +..+.. .....++.++|+| ++++.++.. . |.++|+.+.. ..
T Consensus 255 ~V~VID~~~~~----~~~~~~~Ipv-g~~PhGv~~sPDG------k~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 255 GVKVVDGRKEA----SSLFTRYIPI-ANNPHGCNMAPDK------KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp TEEEEECSGGG----CCSSEEEEEE-ESSCCCEEECTTS------SEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred cEEEEeCcccC----CceeEEEEec-CCCceEEEEcCCC------CEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 47777776520 022 333322 2346789999999 666666554 4 9999998541 01
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE-----EEEEE
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI-----WSVQV 343 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V-----~~l~~ 343 (568)
+..+. -......++|+|+| ++++.. .|++|.+||+...... ..|+.. .+.+..+..|-.+- .++.+
T Consensus 324 ~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~--~~g~~~----~~vi~kidV~yqpGh~~~~~g~t~ 395 (595)
T 1fwx_A 324 VAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRA--YAGEKV----DPIKDKLDVHYQPGHLKTVMGETL 395 (595)
T ss_dssp EECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHH--HHTCSC----CCEEEEEECSSCEEEEEETTTTST
T ss_pred EEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhh--hccccc----ceeEEEeecccccccceeccceEe
Confidence 22222 23446899999999 666654 4999999998641100 001111 13445666665432 12345
Q ss_pred ecCCCEEEEEeC---CCeE----------EEEEcCCCee
Q 008363 344 SRLTGMVAYCSA---DGTV----------HRFQLTAKAV 369 (568)
Q Consensus 344 sp~~~~l~s~s~---Dg~v----------~iwd~~~~~~ 369 (568)
+|||++|+++.. |+.+ .++|+..+++
T Consensus 396 ~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 396 DATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp TCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred CCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 799999988863 4332 6777755443
No 249
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.71 E-value=0.033 Score=56.20 Aligned_cols=198 Identities=7% Similarity=-0.047 Sum_probs=115.1
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
..++|.+... .++.+-...+.|..+++........+ . .+-..+.+.
T Consensus 119 ~gl~~d~~~~---------~ly~~D~~~~~I~r~~~~g~~~~~~~-~------------------------~~~~~p~gl 164 (386)
T 3v65_B 119 IALDFHHRRE---------LVFWSDVTLDRILRANLNGSNVEEVV-S------------------------TGLESPGGL 164 (386)
T ss_dssp EEEEEETTTT---------EEEEEETTTTEEEEEETTSCCEEEEE-C------------------------SSCSCCCCE
T ss_pred EEEEEecCCC---------eEEEEeCCCCcEEEEecCCCCcEEEE-e------------------------CCCCCccEE
Confidence 3888987652 45555556778888888764322211 0 111111123
Q ss_pred EEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFW 261 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lw 261 (568)
+++|. .+.++++-...+.|.+.++... .....+...-.....|++.|.+ ..++++-... . |..+
T Consensus 165 avd~~---~g~lY~~d~~~~~I~~~~~dg~------~~~~l~~~~l~~P~giavdp~~-----g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 165 AVDWV---HDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EEETT---TTEEEEEETTTTEEEECBTTSC------SCEEEECSSCSCEEEEEEETTT-----TEEEEEECSSSCEEEEE
T ss_pred EEEeC---CCeEEEEcCCCCeEEEEeCCCC------ceEEeecCCCCCCcEEEEEcCC-----CeEEEeccCCCCEEEEE
Confidence 44433 4455566666788888887644 2222333334567999999876 1555555555 5 8888
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWS 340 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~ 340 (568)
++..... .......-...+.|+|+|++..|+.+. ..+.|..+|+. |... ...+.........
T Consensus 231 ~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~-------~~~~~~~~~~P~g 293 (386)
T 3v65_B 231 SMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHR-------KAVISQGLPHPFA 293 (386)
T ss_dssp ETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT---------SCSC-------EEEECSSCSSEEE
T ss_pred eCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC---------CCee-------EEEEECCCCCceE
Confidence 8875422 222222234468999998877777764 46789988873 2211 1122222345577
Q ss_pred EEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 341 VQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
|++ ..+.++++-...+.|..++..++
T Consensus 294 iav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 294 ITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 777 34555566666788888885444
No 250
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.71 E-value=0.049 Score=54.10 Aligned_cols=197 Identities=7% Similarity=-0.078 Sum_probs=115.0
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
..++|.+... .++.+-...+.|..+++........+ . .+-.. |.
T Consensus 76 ~~l~~d~~~~---------~ly~~D~~~~~I~r~~~~g~~~~~~~-~------------------------~~~~~--p~ 119 (349)
T 3v64_C 76 IALDFHHRRE---------LVFWSDVTLDRILRANLNGSNVEEVV-S------------------------TGLES--PG 119 (349)
T ss_dssp EEEEEETTTT---------EEEEEETTTTEEEEEETTSCSCEEEE-C------------------------SSCSC--CC
T ss_pred EEEEEecccc---------EEEEEeccCCceEEEecCCCCceEEE-e------------------------CCCCC--cc
Confidence 3899997662 44445556788888888764322211 0 11111 13
Q ss_pred EEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEE
Q 008363 184 TMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKF 260 (568)
Q Consensus 184 ~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~l 260 (568)
.+++. + .+.++++-...+.|.+.++... .....+...-.....|+++|.+ ..++.+-... . |..
T Consensus 120 glavd--~~~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~l~~P~~iavdp~~-----g~ly~td~~~~~~I~r 186 (349)
T 3v64_C 120 GLAVD--WVHDKLYWTDSGTSRIEVANLDGA------HRKVLLWQSLEKPRAIALHPME-----GTIYWTDWGNTPRIEA 186 (349)
T ss_dssp EEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECTTCSCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred EEEEe--cCCCeEEEEcCCCCeEEEEcCCCC------ceEEEEeCCCCCcceEEEecCc-----CeEEEeccCCCCEEEE
Confidence 44443 3 4456666666789999998754 2222233334567899999865 1566665555 5 888
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
+++..... ...+...-...+.|+|+|++..|+.+. ..+.|..+|+. |... ...+...-....
T Consensus 187 ~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d---------G~~~-------~~~~~~~~~~P~ 249 (349)
T 3v64_C 187 SSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD---------GSHR-------KAVISQGLPHPF 249 (349)
T ss_dssp EETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-------EEEECSSCSSEE
T ss_pred EeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC---------CCce-------EEEEeCCCCCce
Confidence 88875422 222222233468999999887777764 46789999983 3221 012222234456
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 340 SVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.|++ ..+.++++-...+.|..++..++
T Consensus 250 giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 250 AITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 7777 34455555556677887775443
No 251
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.67 E-value=0.025 Score=63.06 Aligned_cols=201 Identities=10% Similarity=-0.021 Sum_probs=122.9
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.|+++...+++ .|-.|+.++-|..|+..++........... + ...-....|
T Consensus 358 ~V~~i~~d~~g-----------~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~------------~------~~~l~~~~v 408 (795)
T 4a2l_A 358 VVSCIVEDKDK-----------NLWIGTNDGGLNLYNPITQRFTSYTLQEDE------------S------ARGIGSNNI 408 (795)
T ss_dssp SEEEEEECTTS-----------CEEEEESSSCEEEECTTTCCEEEECCC------------------------CCSCSCE
T ss_pred eeEEEEECCCC-----------CEEEEECCCCeEEEcCCCCcEEEEecCCCC------------c------ccCCCCccE
Confidence 45566666665 466678777788898877543322100000 0 000012446
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
.++... ++|.+|..|+.++-|.+||..++ .. ..+. .+...|.++...+++ .+.+.+. +
T Consensus 409 -~~i~~d--~~g~~lWigt~~~Gl~~~d~~~~------~~-~~~~~~~~~l~~~~v~~i~~d~~g------~lwigt~-~ 471 (795)
T 4a2l_A 409 -KAVYVD--EKKSLVYIGTHAGGLSILHRNSG------QV-ENFNQRNSQLVNENVYAILPDGEG------NLWLGTL-S 471 (795)
T ss_dssp -EEEEEE--TTTTEEEEEETTTEEEEEETTTC------CE-EEECTTTSCCSCSCEEEEEECSSS------CEEEEES-S
T ss_pred -EEEEEc--CCCCEEEEEeCcCceeEEeCCCC------cE-EEeecCCCCcCCCeeEEEEECCCC------CEEEEec-C
Confidence 777765 67765778888788999998765 22 2222 134579999988887 6666554 6
Q ss_pred CEEEEECCCCCcceeeeC------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 257 GLKFWDIRDPFRPLWDIH------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 257 ~v~lwD~~~~~~~~~~~~------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
||.+||..+. ....... -....|.++...++|+..+. +. +-|..||... ++ + .
T Consensus 472 Gl~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~-~Gl~~~~~~~--------~~---------~-~ 530 (795)
T 4a2l_A 472 ALVRFNPEQR-SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIG-GE-EGLSVFKQEG--------LD---------I-Q 530 (795)
T ss_dssp CEEEEETTTT-EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEE-ES-SCEEEEEEET--------TE---------E-E
T ss_pred ceeEEeCCCC-eEEEccccccccccCCceEEEEEECCCCCEEEE-eC-CceEEEeCCC--------Ce---------E-E
Confidence 7999998764 2211111 12356899999998885554 44 4588888743 11 1 1
Q ss_pred Ee-------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 331 VN-------CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 331 ~~-------~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+. .....|.++...++|.+.++.. . -|..||..+..+..
T Consensus 531 ~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~ 576 (795)
T 4a2l_A 531 KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR 576 (795)
T ss_dssp ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE
T ss_pred EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE
Confidence 11 2345789999988887655443 3 68889987776654
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.66 E-value=0.0032 Score=59.90 Aligned_cols=155 Identities=8% Similarity=-0.068 Sum_probs=99.7
Q ss_pred eEEEEccCCCCCEEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCCC-CCeeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363 183 LTMEWSTSPPHDYLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSADT-LPIRAVSWAPAESDSDSANVILTAGHGG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h~-~~V~~v~~~p~~~~~~~~~~las~s~d~-v 258 (568)
..++|+ +++.++++.+. ++.|.++|+.++ +.+..+.-.. .....+++..+ .++++.-.++ +
T Consensus 24 ~Gl~~~--~dg~Lyvstg~~~~s~v~~iD~~tg------~v~~~i~l~~~~fgeGi~~~g~-------~lyv~t~~~~~v 88 (266)
T 2iwa_A 24 QGLVYA--ENDTLFESTGLYGRSSVRQVALQTG------KVENIHKMDDSYFGEGLTLLNE-------KLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEC--STTEEEEEECSTTTCEEEEEETTTC------CEEEEEECCTTCCEEEEEEETT-------EEEEEETTCSEE
T ss_pred ccEEEe--CCCeEEEECCCCCCCEEEEEECCCC------CEEEEEecCCCcceEEEEEeCC-------EEEEEEecCCEE
Confidence 678888 66655555443 579999999987 6666553222 22335555532 4666666667 9
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC-
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS- 335 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~- 335 (568)
.++|..+. +.+..+..-... ...+++||..|+++..++.|.++|..+ .+.. ..+.. +.
T Consensus 89 ~viD~~t~-~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t--------~~v~--------~~I~Vg~~~~ 149 (266)
T 2iwa_A 89 FIYDRRTL-SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHT--------FKLI--------KKHNVKYNGH 149 (266)
T ss_dssp EEEETTTT-EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTT--------CCEE--------EEEECEETTE
T ss_pred EEEECCCC-cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCC--------CcEE--------EEEEECCCCc
Confidence 99999976 666666321111 233556788888877789999999854 2221 23221 11
Q ss_pred --CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 336 --FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 336 --~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++.+.|. ++.+.+....++.|.+.|..++++...
T Consensus 150 p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~ 187 (266)
T 2iwa_A 150 RVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGW 187 (266)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEE
T ss_pred ccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEE
Confidence 246788888 675555555688999999999877654
No 253
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.62 E-value=0.058 Score=52.66 Aligned_cols=201 Identities=8% Similarity=-0.064 Sum_probs=115.0
Q ss_pred eEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCC---ceeeEEeccCCccCCCCceEEEeecceecccccCCcCc
Q 008363 104 WDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLL---RTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQS 180 (568)
Q Consensus 104 ~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~---~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~ 180 (568)
..++|.+.+. .++.+-...+.|..+++... .....+. ......
T Consensus 33 ~g~~~d~~~~---------~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~-------------------------~~~~~~ 78 (316)
T 1ijq_A 33 VALDTEVASN---------RIYWSDLSQRMICSTQLDRAHGVSSYDTVI-------------------------SRDIQA 78 (316)
T ss_dssp EEEEEETTTT---------EEEEEETTTTEEEEEEC--------CEEEE-------------------------CSSCSC
T ss_pred EEEEEEeCCC---------EEEEEECCCCcEEEEECCCCCCCcccEEEE-------------------------eCCCCC
Confidence 3899998762 45555556788999988751 1111110 111111
Q ss_pred cceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-
Q 008363 181 IPLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G- 257 (568)
Q Consensus 181 V~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~- 257 (568)
|..+++. + .+.++++-...+.|.++++... .....+.........|+++|.+ ..++++.... +
T Consensus 79 -p~glavd--~~~~~ly~~d~~~~~I~~~~~~g~------~~~~~~~~~~~~P~~iavdp~~-----g~ly~~d~~~~~~ 144 (316)
T 1ijq_A 79 -PDGLAVD--WIHSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAK 144 (316)
T ss_dssp -CCEEEEE--TTTTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCE
T ss_pred -cCEEEEe--ecCCeEEEEECCCCEEEEEeCCCC------ceEEEEECCCCCcceEEeCCCC-----CEEEEEccCCCCe
Confidence 2445544 3 3445566667889999998743 2222233334567899999865 1555555443 5
Q ss_pred EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363 258 LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF 336 (568)
Q Consensus 258 v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~ 336 (568)
|...++....... .....-...+.|+|+|++..|+.+. ..+.|..+|+. |... ..+......-.
T Consensus 145 I~~~~~dG~~~~~-~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d---------g~~~-----~~~~~~~~~~~ 209 (316)
T 1ijq_A 145 IKKGGLNGVDIYS-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----KTILEDEKRLA 209 (316)
T ss_dssp EEEEETTSCCEEE-EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-----EEEEECTTTTS
T ss_pred EEEEcCCCCCeEE-EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC---------CCce-----EEEeecCCccC
Confidence 8888886542222 2222234568999999888777764 46789999983 3221 11111111223
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
....|++. .+.++++-...+.|..++..++.
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 45677775 35555666667888888875553
No 254
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.56 E-value=0.011 Score=57.85 Aligned_cols=149 Identities=7% Similarity=-0.028 Sum_probs=88.3
Q ss_pred eEEEEccCC-CCCEEEEEeC-----------------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCC
Q 008363 183 LTMEWSTSP-PHDYLLAGCH-----------------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDS 244 (568)
Q Consensus 183 ~~v~~s~~~-~g~~l~sgs~-----------------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 244 (568)
..+++. + +|.++++-.. +|.|..||..++ ...... ........|+|++++
T Consensus 129 ~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~------~~~~~~-~~~~~p~gia~~~dg--- 196 (322)
T 2fp8_A 129 YAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK------ETTLLL-KELHVPGGAEVSADS--- 196 (322)
T ss_dssp EEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT------EEEEEE-EEESCCCEEEECTTS---
T ss_pred ceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC------EEEEec-cCCccCcceEECCCC---
Confidence 677777 7 7776665432 367888887644 222111 112345789999998
Q ss_pred CCCcEE-EEEcCCC-EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC----------CCcEEEEEcccccc
Q 008363 245 DSANVI-LTAGHGG-LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD----------DGAMRIVSLLKAAY 311 (568)
Q Consensus 245 ~~~~~l-as~s~d~-v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~----------dg~I~lwd~~~~~~ 311 (568)
.+| ++-...+ |..||+..... ....+....+ ...+++.++|++.++... .+.|..+|.
T Consensus 197 ---~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~----- 267 (322)
T 2fp8_A 197 ---SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE----- 267 (322)
T ss_dssp ---SEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-----
T ss_pred ---CEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-----
Confidence 644 4445555 99999875321 1111111223 788999999986666544 356777775
Q ss_pred CCCCCCCCccCccccceEEEecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 312 DVPATGKPFAGTKQQGLHLVNCS----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 312 ~~~~~g~~~~~~~~~~l~~~~~h----~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
.|+.+ ..+... -..++++++ .++.++++....+.|.++++.
T Consensus 268 ----~G~~~--------~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 268 ----FGNIL--------EVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp ----TSCEE--------EEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred ----CCCEE--------EEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence 24332 344322 134566666 356666666678889999874
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.51 E-value=0.0046 Score=67.40 Aligned_cols=71 Identities=7% Similarity=0.033 Sum_probs=44.2
Q ss_pred eEEEEccCCCCCEEEEEeC-CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEc-CC----
Q 008363 183 LTMEWSTSPPHDYLLAGCH-DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAG-HG---- 256 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~-Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s-~d---- 256 (568)
.++++. .++.+++.|+. +..+.+||..+..+ ..+..+.. ...-.++++.+++ ++++.|+ .+
T Consensus 246 ~~~~~~--~~g~lyv~GG~~~~~v~~yd~~t~~W----~~~~~~~~-~R~~~s~~~~~dg------~iyv~GG~~~~~~~ 312 (656)
T 1k3i_A 246 PGISMD--GNGQIVVTGGNDAKKTSLYDSSSDSW----IPGPDMQV-ARGYQSSATMSDG------RVFTIGGSWSGGVF 312 (656)
T ss_dssp CEEEEC--TTSCEEEECSSSTTCEEEEEGGGTEE----EECCCCSS-CCSSCEEEECTTS------CEEEECCCCCSSSC
T ss_pred ccccCC--CCCCEEEeCCCCCCceEEecCcCCce----eECCCCCc-cccccceEEecCC------eEEEEeCcccCCcc
Confidence 345655 67889999884 56899999986633 22211211 1112345566677 7888887 32
Q ss_pred -C-EEEEECCCC
Q 008363 257 -G-LKFWDIRDP 266 (568)
Q Consensus 257 -~-v~lwD~~~~ 266 (568)
. +.+||..+.
T Consensus 313 ~~~~e~yd~~t~ 324 (656)
T 1k3i_A 313 EKNGEVYSPSSK 324 (656)
T ss_dssp CCCEEEEETTTT
T ss_pred cccceEeCCCCC
Confidence 3 889998764
No 256
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.46 E-value=0.015 Score=63.34 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=96.4
Q ss_pred EEEEccCCCCCEEEEEeCCCe-------------------EEEEEccCCCCCCCCceeEEeeC--CC-------CCeeEE
Q 008363 184 TMEWSTSPPHDYLLAGCHDGT-------------------VALWKFVASDSSIDSRPLLCFSA--DT-------LPIRAV 235 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~Dg~-------------------I~iwd~~~~~~~~~~~~~~~~~~--h~-------~~V~~v 235 (568)
.+++. +...+++.++.++. |..+|..++ +.+..+.. |. .++...
T Consensus 234 ~~a~d--~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG------~~~W~~~~~~~~~wd~~~~~~~~~~ 305 (668)
T 1kv9_A 234 SMAYD--PELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTG------KLAWHYQVTPGDSWDFTATQQITLA 305 (668)
T ss_dssp CEEEE--TTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC------CEEEEEESSTTCCSCCCCCSCEEEE
T ss_pred ceEEc--CCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCC------ceeeEeecCCCccccccCCCCcEEE
Confidence 45665 66678888887764 888998877 55555543 32 222222
Q ss_pred EEccCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeCCCC------------CCe----------------------
Q 008363 236 SWAPAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIHPAP------------KFI---------------------- 280 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~~h~------------~~i---------------------- 280 (568)
.+..++. ...+++.++.++ ++++|..++ +.+....... .++
T Consensus 306 d~~~~G~---~~~~v~~~~~~G~l~~lD~~tG-~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 306 ELNIDGK---PRKVLMQAPKNGFFYVLDRTNG-KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEETTE---EEEEEEECCTTSEEEEEETTTC-CEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred EeccCCc---EEEEEEEECCCCEEEEEECCCC-CEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 2333440 012688888888 999999888 4442111000 000
Q ss_pred --EEEEEcCCCCEEEEEe------------------------------------CCCcEEEEEccccccCCCCCCCCccC
Q 008363 281 --YGLDWLPDPGCVILSF------------------------------------DDGAMRIVSLLKAAYDVPATGKPFAG 322 (568)
Q Consensus 281 --~~l~~sp~~~~l~s~~------------------------------------~dg~I~lwd~~~~~~~~~~~g~~~~~ 322 (568)
..++++|+...+++.. .+|.|+.||+. +|+.++
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~--------tG~~~W- 452 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPV--------KQKAAW- 452 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETT--------TTEEEE-
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCC--------CCcEEE-
Confidence 1267888777666521 23778888883 465432
Q ss_pred ccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 323 TKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 323 ~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+..+ .+++...+...+.+|++++.||.|+.||..+++..-
T Consensus 453 -------~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 453 -------KVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp -------EEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred -------EccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 33322 233334455578899999999999999999887654
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.45 E-value=0.0093 Score=56.16 Aligned_cols=154 Identities=10% Similarity=0.060 Sum_probs=97.9
Q ss_pred eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
..|.|+ ++.++.+.+.+| .|+++|+.++ +.+..+.-. .........+.+ ..+++..-.++ +.
T Consensus 46 qGL~~~---~~~LyestG~~g~S~v~~vD~~Tg------kv~~~~~l~-~~~FgeGit~~g-----~~ly~ltw~~~~v~ 110 (262)
T 3nol_A 46 EGFFYR---NGYFYESTGLNGRSSIRKVDIESG------KTLQQIELG-KRYFGEGISDWK-----DKIVGLTWKNGLGF 110 (262)
T ss_dssp EEEEEE---TTEEEEEEEETTEEEEEEECTTTC------CEEEEEECC-TTCCEEEEEEET-----TEEEEEESSSSEEE
T ss_pred ceEEEE---CCEEEEECCCCCCceEEEEECCCC------cEEEEEecC-CccceeEEEEeC-----CEEEEEEeeCCEEE
Confidence 567777 567777777776 8999999987 666655432 233332223333 14556655667 99
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC--
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-- 335 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-- 335 (568)
+||..+. +.+..+.... ....+++++..|+.+..++.|.++|..+ .+.+ ..+.. ..
T Consensus 111 v~D~~t~-~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T--------~~v~--------~~I~V~~~g~~ 170 (262)
T 3nol_A 111 VWNIRNL-RQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPES--------LTPV--------RTITVTAHGEE 170 (262)
T ss_dssp EEETTTC-CEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTT--------CSEE--------EEEECEETTEE
T ss_pred EEECccC-cEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCC--------CeEE--------EEEEeccCCcc
Confidence 9999987 6665554211 2123335688888876678899999854 3222 23222 11
Q ss_pred -CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 336 -FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 336 -~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus 171 ~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~ 207 (262)
T 3nol_A 171 LPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGI 207 (262)
T ss_dssp CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEE
T ss_pred ccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEE
Confidence 335567776 666555555688999999999987654
No 258
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.44 E-value=0.0036 Score=58.98 Aligned_cols=151 Identities=12% Similarity=0.003 Sum_probs=99.6
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCee--EEEEccCCCCCCCCcEEEEEcCCC-EE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIR--AVSWAPAESDSDSANVILTAGHGG-LK 259 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~--~v~~~p~~~~~~~~~~las~s~d~-v~ 259 (568)
..|.|+ ++.++++.+.+|.|+++|+.++ +.+..+ - ..... .+++..+ .+++..-.++ +.
T Consensus 58 qGL~~~---~~~Ly~stG~~g~v~~iD~~Tg------kv~~~~-l-~~~~FgeGit~~g~-------~Ly~ltw~~~~v~ 119 (268)
T 3nok_A 58 QGLVFH---QGHFFESTGHQGTLRQLSLESA------QPVWME-R-LGNIFAEGLASDGE-------RLYQLTWTEGLLF 119 (268)
T ss_dssp EEEEEE---TTEEEEEETTTTEEEECCSSCS------SCSEEE-E-CTTCCEEEEEECSS-------CEEEEESSSCEEE
T ss_pred ceEEEE---CCEEEEEcCCCCEEEEEECCCC------cEEeEE-C-CCCcceeEEEEeCC-------EEEEEEccCCEEE
Confidence 467777 4678888889999999999988 444443 1 22333 3555443 5666666677 99
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC--
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-- 335 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-- 335 (568)
+||..+. +.+.++..- ..-..++ +++..|+.+..++.|.++|..+ .+.+ ..+.. +.
T Consensus 120 V~D~~Tl-~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T--------~~v~--------~~I~V~~~g~~ 179 (268)
T 3nok_A 120 TWSGMPP-QRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDG--------FALV--------GAVQVKLRGQP 179 (268)
T ss_dssp EEETTTT-EEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTT--------CCEE--------EEEECEETTEE
T ss_pred EEECCcC-cEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCC--------CeEE--------EEEEeCCCCcc
Confidence 9999987 666666432 2223444 5688888887789999999854 3222 23221 22
Q ss_pred -CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 336 -FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 336 -~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus 180 v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~ 216 (268)
T 3nok_A 180 VELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGV 216 (268)
T ss_dssp CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEE
T ss_pred cccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEE
Confidence 245677887 666555555688999999999887653
No 259
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.43 E-value=0.1 Score=50.81 Aligned_cols=157 Identities=8% Similarity=-0.010 Sum_probs=95.2
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..++|. +.+. ++++-...+.|..+++...... ......+...-.....|++.+.+ .+++++-...+ |.+
T Consensus 33 ~g~~~d--~~~~~ly~~D~~~~~I~~~~~~g~~~~--~~~~~~~~~~~~~p~glavd~~~-----~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 33 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV 103 (316)
T ss_dssp EEEEEE--TTTTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEEEE--eCCCEEEEEECCCCcEEEEECCCCCCC--cccEEEEeCCCCCcCEEEEeecC-----CeEEEEECCCCEEEE
Confidence 789998 5444 5555566789999998751000 01222232233456889998754 15666656666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCC--CcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDD--GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA 337 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d--g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~ 337 (568)
.|+... .....+.........++++|.+..|+.+... +.|..+++. |... ..+ ...-..
T Consensus 104 ~~~~g~-~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d---------G~~~--------~~~~~~~~~~ 165 (316)
T 1ijq_A 104 ADTKGV-KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW 165 (316)
T ss_dssp EETTSS-SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCCE--------EEEECSSCSC
T ss_pred EeCCCC-ceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC---------CCCe--------EEEEECCCCC
Confidence 998754 2222222233457899999977777666542 678888872 3321 222 122345
Q ss_pred EEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363 338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTA 366 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~ 366 (568)
...|+|++++..|..+. ..+.|..+++..
T Consensus 166 P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 166 PNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 68999999876665554 567899999864
No 260
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.025 Score=57.98 Aligned_cols=150 Identities=9% Similarity=0.132 Sum_probs=90.2
Q ss_pred EEEEcc-CCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 105 DVKWKP-YNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 105 ~v~~sp-~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
.|+|+| ++ +.|.++...+.|+.+|+..+...... ..... |.
T Consensus 141 ~lavdp~~~----------g~Lyv~d~~~~I~~id~~~~~v~~~~---------------------------~~~~~-P~ 182 (430)
T 3tc9_A 141 WLSFDPKNH----------NHLYLVGEQHPTRLIDFEKEYVSTVY---------------------------SGLSK-VR 182 (430)
T ss_dssp EEEEETTEE----------EEEEEEEBTEEEEEEETTTTEEEEEE---------------------------CCCSC-EE
T ss_pred EEEECCCCC----------CeEEEEeCCCcEEEEECCCCEEEEEe---------------------------cCCCC-cc
Confidence 788887 34 45555555578888888775433221 11122 48
Q ss_pred EEEEccCCCCCEEEEEeC-CC----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC
Q 008363 184 TMEWSTSPPHDYLLAGCH-DG----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG 257 (568)
Q Consensus 184 ~v~~s~~~~g~~l~sgs~-Dg----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~ 257 (568)
.|+|+ ++|++|+++.. ++ .+.+++.. +.. .....+.. ......++++| ++ .++++-..++
T Consensus 183 ~ia~d--~~G~~lyvad~~~~~~~~~v~~~~~~-g~~----~~~~~l~~-~~~p~giavdp~~g------~lyv~d~~~~ 248 (430)
T 3tc9_A 183 TICWT--HEADSMIITNDQNNNDRPNNYILTRE-SGF----KVITELTK-GQNCNGAETHPING------ELYFNSWNAG 248 (430)
T ss_dssp EEEEC--TTSSEEEEEECCSCTTSEEEEEEEGG-GTS----CSEEEEEE-CSSCCCEEECTTTC------CEEEEETTTT
T ss_pred eEEEe--CCCCEEEEEeCCCCcccceEEEEeCC-Cce----eeeeeecc-CCCceEEEEeCCCC------EEEEEECCCC
Confidence 89988 88885655554 22 23334433 211 11122222 23467889999 65 6777666666
Q ss_pred -EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEcc
Q 008363 258 -LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLL 307 (568)
Q Consensus 258 -v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~ 307 (568)
|..+|...... .+.... .....+.|+|+|++++|+.+ ...+.|..++..
T Consensus 249 ~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 249 QVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 99999886522 222221 12346899999999966665 457889998874
No 261
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.40 E-value=0.11 Score=50.77 Aligned_cols=201 Identities=10% Similarity=-0.034 Sum_probs=116.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.+ ++.|.+... .++.+-...+.|..+++........+.. .+-. .
T Consensus 37 ~~-~ld~d~~~~---------~lyw~D~~~~~I~r~~~~g~~~~~~~~~------------------------~~l~-~- 80 (318)
T 3sov_A 37 AA-AVDFVFSHG---------LIYWSDVSEEAIKRTEFNKTESVQNVVV------------------------SGLL-S- 80 (318)
T ss_dssp EE-EEEEEGGGT---------EEEEEETTTTEEEEEETTSSSCCCEEEE------------------------ECCS-C-
T ss_pred cE-EEEEEeCCC---------EEEEEECCCCcEEEEEccCCCceEEEEc------------------------CCCC-C-
Confidence 44 899998652 4555556678888888876432111100 0101 1
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~ 259 (568)
|..+++.+. .+.++++-...+.|.++++... .....+.........|++.|.+ ..++.+-.. .. |.
T Consensus 81 p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~------~~~~l~~~~~~~P~giavdp~~-----g~ly~td~~~~~~I~ 148 (318)
T 3sov_A 81 PDGLACDWL-GEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSS-----GFMYWTDWGEVPKIE 148 (318)
T ss_dssp CCEEEEETT-TTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSSEEEEEEEGGG-----TEEEEEECSSSCEEE
T ss_pred ccEEEEEcC-CCeEEEEECCCCEEEEEECCCC------cEEEEEeCCCCCccEEEEeCCC-----CEEEEEecCCCCEEE
Confidence 134444311 4556666667789999998754 2222232344567899999865 145555422 35 88
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA 337 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~ 337 (568)
..++...... ..+...-...+.|+|+|++..|+.+. ..+.|..+|+. |... ..+ .+.-..
T Consensus 149 r~~~dG~~~~-~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~--------~~~~~~~~~~ 210 (318)
T 3sov_A 149 RAGMDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNR--------QAVVKGSLPH 210 (318)
T ss_dssp EEETTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC--------EEEECSCCSC
T ss_pred EEEcCCCCeE-EEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC---------CCce--------EEEecCCCCC
Confidence 8888754222 22222233458999999877777764 47889999983 3221 122 223344
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
...+++.. +.++.+-...+.|..++..++..
T Consensus 211 P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 211 PFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred ceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 56777753 45555555678888888865543
No 262
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.40 E-value=0.074 Score=59.15 Aligned_cols=203 Identities=9% Similarity=0.047 Sum_probs=123.8
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.|+++...+++ .|..|+.+ -|.+|+..++........... ...-....|
T Consensus 264 ~i~~i~~d~~g-----------~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~-------------------~~~l~~~~i 312 (795)
T 4a2l_A 264 YIRSLAMDSQN-----------RLWIGTFN-DLNIYHEGTDSFASYSSNPVE-------------------NGSLSQRSV 312 (795)
T ss_dssp BEEEEEECTTS-----------CEEEEESS-CEEEEETTTTEEEEECCCTTS-------------------TTSCSSSCE
T ss_pred eEEEEEEcCCC-----------CEEEEeCC-hhheEcCCCCeEEEEecCCCC-------------------CCCCCCCcE
Confidence 45577776666 35556655 488888877543321100000 001123456
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC-------CCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA-------DTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~-------h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.++... ++| .|-.|+.++-|..|+..... +..+.. ....|.++...+++ .+.+...
T Consensus 313 -~~i~~D--~~g-~lWigt~~~Gl~~~~~~~~~-------~~~~~~~~~~~~l~~~~V~~i~~d~~g------~lWiGt~ 375 (795)
T 4a2l_A 313 -RSIFMD--SQG-GMWLGTYFGGLNYYHPIRNR-------FKNIRNIPYKNSLSDNVVSCIVEDKDK------NLWIGTN 375 (795)
T ss_dssp -EEEEEC--TTS-CEEEEESSSCEEEECGGGGS-------SEEECCCTTSSSCSCSSEEEEEECTTS------CEEEEES
T ss_pred -EEEEEe--CCc-CEEEEECCCCeEEeCCCccc-------ceEEcCCCCCCCCCCCeeEEEEECCCC------CEEEEEC
Confidence 788766 666 56778888889999876441 122211 23469999988887 5665444
Q ss_pred CCCEEEEECCCCCcceeeeC-------CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccc
Q 008363 255 HGGLKFWDIRDPFRPLWDIH-------PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQG 327 (568)
Q Consensus 255 ~d~v~lwD~~~~~~~~~~~~-------~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~ 327 (568)
.+||..||..+..-...... -....|.+++..++++.|.+|+.++-|.+||... ++.
T Consensus 376 ~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~--------~~~-------- 439 (795)
T 4a2l_A 376 DGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS--------GQV-------- 439 (795)
T ss_dssp SSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT--------CCE--------
T ss_pred CCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC--------CcE--------
Confidence 44699999876521111110 1135689999988888677788877799999843 322
Q ss_pred eEEEe-----cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 328 LHLVN-----CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 328 l~~~~-----~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
..+. .+...|.++...+++.+.+.. . +.|.+|+..++.+..
T Consensus 440 -~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 440 -ENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTT 485 (795)
T ss_dssp -EEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEE
T ss_pred -EEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEE
Confidence 1222 134578999988877755554 3 458889988776654
No 263
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.35 E-value=0.16 Score=51.30 Aligned_cols=150 Identities=9% Similarity=-0.053 Sum_probs=90.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCCCcc
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDPFRP 269 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~~~~ 269 (568)
.+.++++-...+.|.+.++... .....+...-.....|++.|.+ ..++.+-.. .. |...++.... .
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~------~~~~l~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~~~~dG~~-~ 237 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVD-I 237 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTC------SEEEEEECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEEEETTSCS-C
T ss_pred CCceEEEECCCCeEEEEeCCCC------ceEEEEeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEEEeCCCCc-c
Confidence 4556666667889999988754 2333333344558899999965 145555433 24 9989987542 2
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCC
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTG 348 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~ 348 (568)
...+...-...+.|+++|++..|+.+. ..+.|..+|+. |... ..+......-....+|++. .+.
T Consensus 238 ~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d---------G~~~-----~~~~~~~~~l~~P~gl~v~-~~~ 302 (400)
T 3p5b_L 238 YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----KTILEDEKRLAHPFSLAVF-EDK 302 (400)
T ss_dssp EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCCC-----EEEEECSSTTSSEEEEEEE-TTE
T ss_pred EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC---------CCcc-----EEEEeCCCCCCCCEEEEEe-CCE
Confidence 222222234568999999888887774 46789999983 3221 1111111122344567763 345
Q ss_pred EEEEEeCCCeEEEEEcCCCe
Q 008363 349 MVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 349 ~l~s~s~Dg~v~iwd~~~~~ 368 (568)
++++-...+.|..++..++.
T Consensus 303 lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 303 VFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEESSSCSEEEEESSSCC
T ss_pred EEEecCCCCeEEEEEcCCCC
Confidence 55555566788888865553
No 264
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.33 E-value=0.039 Score=56.61 Aligned_cols=150 Identities=9% Similarity=0.061 Sum_probs=87.3
Q ss_pred EEEEccC--CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 105 DVKWKPY--NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 105 ~v~~sp~--~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.|+|.|+ . +.|..+...+.|+.++..++...... +.... |
T Consensus 143 gvavd~~s~~----------g~Lyv~D~~~~I~~id~~~g~v~~~~---------------------------~~~~~-P 184 (433)
T 4hw6_A 143 RMMFDPNSNY----------DDLYWVGQRDAFRHVDFVNQYVDIKT---------------------------TNIGQ-C 184 (433)
T ss_dssp EEEECTTTTT----------CEEEEECBTSCEEEEETTTTEEEEEC---------------------------CCCSC-E
T ss_pred eEEEccccCC----------CEEEEEeCCCCEEEEECCCCEEEEee---------------------------cCCCC-c
Confidence 7889985 3 35555544488999998775543221 11122 4
Q ss_pred eEEEEccCCCCCEEEEEeCC---Ce-EEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc-CCCCCCCCcEEEEEcCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCHD---GT-VALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP-AESDSDSANVILTAGHGG 257 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~D---g~-I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p-~~~~~~~~~~las~s~d~ 257 (568)
..|+|+ ++|+++++.... .. +...+.... . .....+. .-.....++++| .+ .++++-..++
T Consensus 185 ~giavd--~dG~lyVad~~~~~~~~gv~~~~~~~~-~----~~~~~~~-~~~~P~giavd~~~G------~lyv~d~~~~ 250 (433)
T 4hw6_A 185 ADVNFT--LNGDMVVVDDQSSDTNTGIYLFTRASG-F----TERLSLC-NARGAKTCAVHPQNG------KIYYTRYHHA 250 (433)
T ss_dssp EEEEEC--TTCCEEEEECCSCTTSEEEEEECGGGT-T----CCEEEEE-ECSSBCCCEECTTTC------CEEECBTTCS
T ss_pred cEEEEC--CCCCEEEEcCCCCcccceEEEEECCCC-e----ecccccc-ccCCCCEEEEeCCCC------eEEEEECCCC
Confidence 889988 888844444321 12 333333221 1 1011221 234467789999 65 6666666666
Q ss_pred -EEEEECCCCCc--ceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEcc
Q 008363 258 -LKFWDIRDPFR--PLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLL 307 (568)
Q Consensus 258 -v~lwD~~~~~~--~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~ 307 (568)
|+.+|..++.. .+... +....-..|+|+|++++|+.+. ..+.|+.+++.
T Consensus 251 ~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 251 MISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 99999875522 12111 1122235799999999666664 47889998874
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.32 E-value=0.074 Score=53.58 Aligned_cols=154 Identities=6% Similarity=0.013 Sum_probs=96.8
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
..++|.+. ++.++++-...+.|..+++... .....+.........|++.+.+ ..++++-.... |.+.
T Consensus 119 ~gl~~d~~-~~~ly~~D~~~~~I~r~~~~g~------~~~~~~~~~~~~p~glavd~~~-----g~lY~~d~~~~~I~~~ 186 (386)
T 3v65_B 119 IALDFHHR-RELVFWSDVTLDRILRANLNGS------NVEEVVSTGLESPGGLAVDWVH-----DKLYWTDSGTSRIEVA 186 (386)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEETTSC------CEEEEECSSCSCCCCEEEETTT-----TEEEEEETTTTEEEEC
T ss_pred EEEEEecC-CCeEEEEeCCCCcEEEEecCCC------CcEEEEeCCCCCccEEEEEeCC-----CeEEEEcCCCCeEEEE
Confidence 78999832 3345555556788999998754 2323333333456788998755 15666666566 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D-GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI 338 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d-g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V 338 (568)
++... .....+...-.....|+++|.+..|+.+.. . +.|+.+++. |... ..+ ...-...
T Consensus 187 ~~dg~-~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~~~~P 248 (386)
T 3v65_B 187 NLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGR--------RIIADTHLFWP 248 (386)
T ss_dssp BTTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSSCSCE
T ss_pred eCCCC-ceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC---------CCCc--------EEEEECCCCCe
Confidence 98755 222233333345789999998877777644 4 678888873 3222 122 2223456
Q ss_pred EEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363 339 WSVQVSRLTGMVAYC-SADGTVHRFQLTA 366 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~ 366 (568)
..|+|+|++..|..+ +..+.|..+++..
T Consensus 249 nGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 249 NGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred eeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 899999876555554 4567888888864
No 266
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.30 E-value=0.044 Score=60.90 Aligned_cols=155 Identities=12% Similarity=0.062 Sum_probs=96.3
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
..| .++... ++| .|..|+.++-|..++..++ . +..+. .....|.++...+++ .+.+.+.
T Consensus 407 ~~v-~~i~~d--~~g-~lWigt~~~Gl~~~~~~~~------~-~~~~~~~~~~~~~v~~i~~d~~g------~lwigt~- 468 (781)
T 3v9f_A 407 NSV-LCSLKD--SEG-NLWFGTYLGNISYYNTRLK------K-FQIIELEKNELLDVRVFYEDKNK------KIWIGTH- 468 (781)
T ss_dssp SBE-EEEEEC--TTS-CEEEEETTEEEEEECSSSC------E-EEECCSTTTCCCCEEEEEECTTS------EEEEEET-
T ss_pred cce-EEEEEC--CCC-CEEEEeccCCEEEEcCCCC------c-EEEeccCCCCCCeEEEEEECCCC------CEEEEEC-
Confidence 456 777755 565 5566777777888887654 2 22221 134679999988887 5555444
Q ss_pred CCEEEEECCCCCcceeeeCCC-----CCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 256 GGLKFWDIRDPFRPLWDIHPA-----PKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 256 d~v~lwD~~~~~~~~~~~~~h-----~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
++|..||..+.. ........ ...|.++...++|.. ..|+.++-|..||... ++ +..
T Consensus 469 ~Gl~~~~~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~--------~~---------~~~ 529 (781)
T 3v9f_A 469 AGVFVIDLASKK-VIHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGGVGIYTPDM--------QL---------VRK 529 (781)
T ss_dssp TEEEEEESSSSS-CCEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSCEEEECTTC--------CE---------EEE
T ss_pred CceEEEeCCCCe-EEecccCcccccccceeEEEEEcCCCCE-EEEEcCCCEEEEeCCC--------Ce---------EEE
Confidence 669999987652 22111111 356899999998874 4555544477788732 21 122
Q ss_pred Eec----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 331 VNC----SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 331 ~~~----h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+.. ....|.++...++|.+.++.. +|.|..||..+..+..
T Consensus 530 ~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~ 573 (781)
T 3v9f_A 530 FNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV 573 (781)
T ss_dssp ECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE
T ss_pred ccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE
Confidence 221 235688998888887655544 6665888887765543
No 267
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.29 E-value=0.058 Score=50.23 Aligned_cols=153 Identities=9% Similarity=-0.038 Sum_probs=97.3
Q ss_pred eEEEEccCCCCCEEEEEeCCC--eEEEEEccCCCCCCCCceeEEeeCCCCC-eeEEEEccCCCCCCCCcEEEEEcCCC-E
Q 008363 183 LTMEWSTSPPHDYLLAGCHDG--TVALWKFVASDSSIDSRPLLCFSADTLP-IRAVSWAPAESDSDSANVILTAGHGG-L 258 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg--~I~iwd~~~~~~~~~~~~~~~~~~h~~~-V~~v~~~p~~~~~~~~~~las~s~d~-v 258 (568)
-.|.|+ . +.++.+.+.+| .|+.+|+.++ +.+..+.-.... --.+++..+ .+++..-.++ +
T Consensus 24 qGL~~~--~-~~LyestG~~g~S~v~~vD~~tg------kv~~~~~l~~~~fgeGi~~~~~-------~ly~ltw~~~~v 87 (243)
T 3mbr_X 24 EGLFYL--R-GHLYESTGETGRSSVRKVDLETG------RILQRAEVPPPYFGAGIVAWRD-------RLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEE--T-TEEEEEECCTTSCEEEEEETTTC------CEEEEEECCTTCCEEEEEEETT-------EEEEEESSSSEE
T ss_pred ccEEEE--C-CEEEEECCCCCCceEEEEECCCC------CEEEEEeCCCCcceeEEEEeCC-------EEEEEEeeCCEE
Confidence 478887 3 56677777654 8999999987 666655432221 133444432 5666666667 9
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CC-
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS- 335 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~- 335 (568)
.+||..+. +.+.++..-. .-..|+ +++..|+.+..++.|.++|..++. .+ ..+.. +.
T Consensus 88 ~v~D~~tl-~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~--------~~--------~~I~V~~~g~ 147 (243)
T 3mbr_X 88 FVYDLATL-TPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQ--------QV--------GSIKVTAGGR 147 (243)
T ss_dssp EEEETTTT-EEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCC--------EE--------EEEECEETTE
T ss_pred EEEECCcC-cEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCe--------EE--------EEEEEccCCc
Confidence 99999987 6666664222 223444 567778887778899999985422 21 23322 21
Q ss_pred --CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 336 --FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 336 --~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++.+.|. +|.+.+..-.+..|.+.|..++++...
T Consensus 148 ~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~ 185 (243)
T 3mbr_X 148 PLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAW 185 (243)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEE
T ss_pred ccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEE
Confidence 345667765 566555554678999999999887653
No 268
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.21 E-value=0.17 Score=50.13 Aligned_cols=153 Identities=7% Similarity=0.019 Sum_probs=97.0
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..++|. +... ++++-...+.|..+++... .....+.........|++.+.+ ..++++-...+ |.+
T Consensus 76 ~~l~~d--~~~~~ly~~D~~~~~I~r~~~~g~------~~~~~~~~~~~~p~glavd~~~-----g~ly~~d~~~~~I~~ 142 (349)
T 3v64_C 76 IALDFH--HRRELVFWSDVTLDRILRANLNGS------NVEEVVSTGLESPGGLAVDWVH-----DKLYWTDSGTSRIEV 142 (349)
T ss_dssp EEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred EEEEEe--ccccEEEEEeccCCceEEEecCCC------CceEEEeCCCCCccEEEEecCC-----CeEEEEcCCCCeEEE
Confidence 789998 4444 4555556788999998755 2222332333456789999755 15666666666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-C-CcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-D-GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA 337 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-d-g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~ 337 (568)
.++.... ....+...-.....|+++|.+..|+.+.. . +.|..+++. |... ..+. ..-..
T Consensus 143 ~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~~~~ 204 (349)
T 3v64_C 143 ANLDGAH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD---------GSGR--------RIIADTHLFW 204 (349)
T ss_dssp EETTSCS-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EESCCSSCSC
T ss_pred EcCCCCc-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC---------CCCc--------EEEEECCCCC
Confidence 9988653 22233333345689999997777776644 4 778888873 3221 1221 12234
Q ss_pred EEEEEEecCCCEEEEEe-CCCeEEEEEcCC
Q 008363 338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTA 366 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~ 366 (568)
...|+|+|++..|..+. ..+.|..+++..
T Consensus 205 PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 205 PNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 68999998766555554 567899999864
No 269
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.21 E-value=0.22 Score=50.37 Aligned_cols=158 Identities=8% Similarity=-0.030 Sum_probs=98.1
Q ss_pred eEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..|+|. +.+. ++++-...+.|..+++..... .......+.........|++.+.+ .+++++-...+ |.+
T Consensus 115 ~~l~~d--~~~~~lywsD~~~~~I~~~~~~g~~~--~~~~~~~~~~~~~~p~glavD~~~-----~~lY~~d~~~~~I~~ 185 (400)
T 3p5b_L 115 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHG--VSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV 185 (400)
T ss_dssp EEEEEE--TTTTEEEEEETTTTEEEEEEC--------CCCEEEECSSCSCEEEEEEETTT-----TEEEEEETTTTEEEE
T ss_pred eEEeee--eccCceEEEecCCCeEEEEEcccCCC--CCcceEEEeCCCCCcccEEEEecC-----CceEEEECCCCeEEE
Confidence 789998 5444 455555678899998874210 012233333344567899999854 15666666666 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFA 337 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~ 337 (568)
.|+.... ....+...-.....|+++|.+.+|+.+.. .+.|...++. |... ..+ ...-..
T Consensus 186 ~~~~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~d---------G~~~--------~~~~~~~l~~ 247 (400)
T 3p5b_L 186 ADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW 247 (400)
T ss_dssp ECTTTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETT---------SCSC--------EEEECSSCSC
T ss_pred EeCCCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCC---------CCcc--------EEEEECCCCc
Confidence 9988653 22223223345789999997777776643 4778888873 3322 222 222346
Q ss_pred EEEEEEecCCCEEEEEe-CCCeEEEEEcCCC
Q 008363 338 IWSVQVSRLTGMVAYCS-ADGTVHRFQLTAK 367 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~ 367 (568)
...|++++++..|..+. ..+.|..+++...
T Consensus 248 P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 248 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 78999998876666654 4678999998653
No 270
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.20 E-value=0.095 Score=55.84 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.1
Q ss_pred ecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 344 SRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 344 sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
...+.+++.++.||.|+.||..+++..-.
T Consensus 472 ~t~gg~v~~g~~dg~l~a~D~~tG~~lw~ 500 (571)
T 2ad6_A 472 YTKGGLVWYATLDGYLKALDNKDGKELWN 500 (571)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCCEEEEEcCCCeEEEEECCCCCEEEE
Confidence 33567788899999999999998876543
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.20 E-value=0.0083 Score=65.44 Aligned_cols=197 Identities=11% Similarity=0.097 Sum_probs=116.3
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCc-CccceEEEEccCCCCCEEEEEeC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGT-QSIPLTMEWSTSPPHDYLLAGCH 201 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~-~~V~~~v~~s~~~~g~~l~sgs~ 201 (568)
..|++++.++.|.-+|..+|+.+-.+....... . ..... ..+...+... +..|++++.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~--------------~---~~~~~~~~~~~~~~~~----~~~v~v~~~ 125 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV--------------K---ARTSCCDAVNRGVALW----GDKVYVGTL 125 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG--------------G---GGGCTTCSCCCCCEEE----BTEEEEECT
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCcc--------------c---cccccccCCccceEEE----CCEEEEEcC
Confidence 477888889999999999988775542211000 0 00000 0000122222 458888999
Q ss_pred CCeEEEEEccCCCCCCCCceeEEeeCCC----CCeeE-EEEccCCCCCCCCcEEEEEcC-----CC-EEEEECCCCCcce
Q 008363 202 DGTVALWKFVASDSSIDSRPLLCFSADT----LPIRA-VSWAPAESDSDSANVILTAGH-----GG-LKFWDIRDPFRPL 270 (568)
Q Consensus 202 Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~-v~~~p~~~~~~~~~~las~s~-----d~-v~lwD~~~~~~~~ 270 (568)
||.|..+|..++ +.+..+.... ..+.+ ..+ .++ .+++..+. ++ |..+|..++ +.+
T Consensus 126 dg~l~alD~~tG------~~~W~~~~~~~~~~~~~~~~P~v-~~~------~v~vg~~~~~~~~~g~v~a~D~~tG-~~~ 191 (668)
T 1kv9_A 126 DGRLIALDAKTG------KAIWSQQTTDPAKPYSITGAPRV-VKG------KVIIGNGGAEYGVRGFVSAYDADTG-KLA 191 (668)
T ss_dssp TSEEEEEETTTC------CEEEEEECSCTTSSCBCCSCCEE-ETT------EEEECCBCTTTCCBCEEEEEETTTC-CEE
T ss_pred CCEEEEEECCCC------CEeeeeccCCCCCcceecCCCEE-ECC------EEEEeCCCCCcCCCCEEEEEECCCC-cEE
Confidence 999999999987 5555543321 01110 011 133 34443322 46 999999988 666
Q ss_pred eeeCCC---CC----------------------------CeEEEEEcCCCCEEEEEeCCCc-------------------
Q 008363 271 WDIHPA---PK----------------------------FIYGLDWLPDPGCVILSFDDGA------------------- 300 (568)
Q Consensus 271 ~~~~~h---~~----------------------------~i~~l~~sp~~~~l~s~~~dg~------------------- 300 (568)
+.+... .. ....+++.|+...++.++.++.
T Consensus 192 W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 192 WRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp EEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 555311 00 1124788888888888877653
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEec--CC-------CCEEEEEEecCCC---EEEEEeCCCeEEEEEcCCCe
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SS-------FAIWSVQVSRLTG---MVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~-------~~V~~l~~sp~~~---~l~s~s~Dg~v~iwd~~~~~ 368 (568)
|..+|.+ +|+.++ .+.. |. .++....+..+|+ +|+.++.+|.++++|..+++
T Consensus 272 v~AlD~~--------tG~~~W--------~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 272 ILAIRPD--------TGKLAW--------HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEECTT--------TCCEEE--------EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred EEEEcCC--------CCceee--------EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 8888883 576643 3332 21 2333333334664 78999999999999999987
Q ss_pred ee
Q 008363 369 VE 370 (568)
Q Consensus 369 ~~ 370 (568)
+.
T Consensus 336 ~l 337 (668)
T 1kv9_A 336 LI 337 (668)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 272
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.19 E-value=0.023 Score=55.40 Aligned_cols=153 Identities=8% Similarity=0.136 Sum_probs=100.3
Q ss_pred ceEEEEccCCCCCEEEEEe-CCCeEEEEEccCCCCCCCCceeEEeeC----CCC--CeeEEEE---ccCCCCCCCCcEEE
Q 008363 182 PLTMEWSTSPPHDYLLAGC-HDGTVALWKFVASDSSIDSRPLLCFSA----DTL--PIRAVSW---APAESDSDSANVIL 251 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs-~Dg~I~iwd~~~~~~~~~~~~~~~~~~----h~~--~V~~v~~---~p~~~~~~~~~~la 251 (568)
|-+++|. +....|..++ ..|+|..||...+.. ..+ .+.+ ... .+..|.| .|.+ .+++
T Consensus 15 PE~~~wd--~~~g~~~vs~l~~g~V~~~~~~~~~~----~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g------rL~v 81 (334)
T 2p9w_A 15 PEDTIYD--RTRQVFYQSNLYKGRIEVYNPKTQSH----FNV-VIDGASSNGDGEQQMSGLSLLTHDNSK------RLFA 81 (334)
T ss_dssp CSCEEEE--TTTTEEEEEETTTTEEEEECTTTCCE----EEE-CCTTTCCSSCCSEEEEEEEESSSSSCC------EEEE
T ss_pred CcCccCc--CCCCEEEEEeccCCEEEEEcCCCCeE----EEE-ecCCccccCCCcceeeEEEEeccCCCC------cEEE
Confidence 4688998 4444555555 799999999874411 112 2221 111 3579999 5777 6777
Q ss_pred EEcC-------------CC-EEEEECC---CCCcceeeeC--C-----------CCCCeEEEEEcCCCCEEEEEeCC-Cc
Q 008363 252 TAGH-------------GG-LKFWDIR---DPFRPLWDIH--P-----------APKFIYGLDWLPDPGCVILSFDD-GA 300 (568)
Q Consensus 252 s~s~-------------d~-v~lwD~~---~~~~~~~~~~--~-----------h~~~i~~l~~sp~~~~l~s~~~d-g~ 300 (568)
+... +. |..+|+. ++ +.++... . -....+.++..++|+..++++.. +.
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg-~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENS-KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTC-CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCC-CEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 5431 45 9999998 55 3332221 1 11247899999999999988887 88
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEEe------cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN------CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~------~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
|..++. .|+.+ ..+. ......+.|+++|++.+|++...+|.|..+|+.
T Consensus 161 I~rV~p---------dG~~~--------~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 161 IARVSA---------DGKTV--------STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECT---------TSCCE--------EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred EEEEeC---------CCCEE--------eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence 777666 24322 1211 112235689999999988888779999999986
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.13 E-value=0.15 Score=48.01 Aligned_cols=164 Identities=8% Similarity=0.118 Sum_probs=103.2
Q ss_pred cCCcCccceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEEEE
Q 008363 175 CGGTQSIPLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVILT 252 (568)
Q Consensus 175 ~~h~~~V~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~las 252 (568)
.+-...+ ..++|+ |+++ ++++...++.|...|+. + ..++.+. +-....-.|++.+++ .++++
T Consensus 23 ~g~~~~l-SGla~~--~~~~~L~aV~d~~~~I~~ld~~-g------~v~~~i~l~g~~D~EGIa~~~~g------~~~vs 86 (255)
T 3qqz_A 23 AGITNNI-SSLTWS--AQSNTLFSTINKPAAIVEMTTN-G------DLIRTIPLDFVKDLETIEYIGDN------QFVIS 86 (255)
T ss_dssp TTCCSCE-EEEEEE--TTTTEEEEEEETTEEEEEEETT-C------CEEEEEECSSCSSEEEEEECSTT------EEEEE
T ss_pred CCcccCc-ceeEEe--CCCCEEEEEECCCCeEEEEeCC-C------CEEEEEecCCCCChHHeEEeCCC------EEEEE
Confidence 4444566 899999 5544 55667888899998987 4 4555442 223557889999887 56565
Q ss_pred EcCCC-EEEEECCCCCc--ceeee------CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCc
Q 008363 253 AGHGG-LKFWDIRDPFR--PLWDI------HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGT 323 (568)
Q Consensus 253 ~s~d~-v~lwD~~~~~~--~~~~~------~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~ 323 (568)
.-.+. +.++++..... .+... .........|+|+|.+..|+++.......||.++-.. .+..
T Consensus 87 ~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~-----~~~~---- 157 (255)
T 3qqz_A 87 DERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLL-----SSNE---- 157 (255)
T ss_dssp ETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTT-----CSSC----
T ss_pred ECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccc-----cCCc----
Confidence 54455 88988875532 11111 1234456899999999888888776566666663110 1111
Q ss_pred cccceEEEe-------cCCCCEEEEEEecCC-CEEEEEeCCCeEEEEEcCCC
Q 008363 324 KQQGLHLVN-------CSSFAIWSVQVSRLT-GMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 324 ~~~~l~~~~-------~h~~~V~~l~~sp~~-~~l~s~s~Dg~v~iwd~~~~ 367 (568)
+..+. .+...+.+++++|.. .+++.......|.++|....
T Consensus 158 ----l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 158 ----LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp ----CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred ----eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 11211 123356889999985 55666666778888887654
No 274
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.13 E-value=0.36 Score=53.31 Aligned_cols=153 Identities=10% Similarity=0.030 Sum_probs=90.3
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~l 260 (568)
.+|+|. .+.++++-...+.|.+.++... .....+.........|++.|.. ..++++-... . |..
T Consensus 476 LAvD~~---~~~LY~tD~~~~~I~v~~ldG~------~~~~l~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~ 541 (791)
T 3m0c_C 476 LAVDWI---HSNIYWTDSVLGTVSVADTKGV------KRKTLFRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKK 541 (791)
T ss_dssp EEEETT---TTEEEEEETTTTEEEEEETTSS------SEEEEEECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred eeeeec---CCcEEEEecCCCeEEEEeCCCC------eEEEEEeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEE
Confidence 455544 3356666677889999998754 2222333344568999999975 1455554333 5 888
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEec--CCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--SSFA 337 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h~~~ 337 (568)
.++... .....+...-...+.|++++.+..|+.+. ..+.|..+++. |... . ..+.. .-..
T Consensus 542 ~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d---------G~~~-----~--~v~~~~~~l~~ 604 (791)
T 3m0c_C 542 GGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR-----K--TILEDEKRLAH 604 (791)
T ss_dssp EETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC-----E--EEEECTTTTSS
T ss_pred EecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC---------CCce-----E--EEecCCCccCC
Confidence 888754 22223333335678999998877777774 46788888883 3322 1 12222 1223
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
..+|++.. +.++++-...+.|...+..++
T Consensus 605 P~glav~~-~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 605 PFSLAVFE-DKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence 45666632 234444445577777776554
No 275
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.08 E-value=0.058 Score=52.26 Aligned_cols=140 Identities=8% Similarity=-0.072 Sum_probs=76.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEE--------eeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLC--------FSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~--------~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
+++..+++-..+|.|..+|...+. ...... ....-...+.| ++++. .++++-.... |..+
T Consensus 126 ~~~~~~v~d~~~g~i~~~d~~~~~----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~-----~lyv~d~~~~~I~~~ 194 (306)
T 2p4o_A 126 SDTQYLTADSYRGAIWLIDVVQPS----GSIWLEHPMLARSNSESVFPAANGL--KRFGN-----FLYVSNTEKMLLLRI 194 (306)
T ss_dssp SSSEEEEEETTTTEEEEEETTTTE----EEEEEECGGGSCSSTTCCSCSEEEE--EEETT-----EEEEEETTTTEEEEE
T ss_pred CCCcEEEEECCCCeEEEEeCCCCc----EeEEEECCccccccccCCCCcCCCc--CcCCC-----EEEEEeCCCCEEEEE
Confidence 344444544458888888875320 011000 00111234555 67761 3455555556 9999
Q ss_pred ECCC-CCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 262 DIRD-PFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 262 D~~~-~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
|+.. +.. ....+.. ......|+++++|+++++....+.|.+||. .|+.. .+..+...-...+
T Consensus 195 ~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~---------~G~~~------~~~~~~~~~~~p~ 258 (306)
T 2p4o_A 195 PVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAP---------DRSTT------IIAQAEQGVIGST 258 (306)
T ss_dssp EBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECT---------TCCEE------EEECGGGTCTTEE
T ss_pred EeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECC---------CCCEE------EEeecccccCCce
Confidence 9874 211 1111110 123466899999987666666888999986 24321 0111222234578
Q ss_pred EEEEe---cCCCEEEEEeCCC
Q 008363 340 SVQVS---RLTGMVAYCSADG 357 (568)
Q Consensus 340 ~l~~s---p~~~~l~s~s~Dg 357 (568)
+++|. |++..|+.++..+
T Consensus 259 ~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 259 AVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EEEECCSTTTTTEEEEEECTT
T ss_pred EEEEecccCCCCEEEEECCCC
Confidence 99998 7877776666543
No 276
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.03 E-value=0.04 Score=53.66 Aligned_cols=159 Identities=8% Similarity=0.041 Sum_probs=99.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEe-CCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccce
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLL-GNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPL 183 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s-~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~ 183 (568)
+++|.+.. +.|..++ ..|+|..|+...+.......+. ++. .+.....+.
T Consensus 17 ~~~wd~~~----------g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~--~s~------------------~g~~~~~~s 66 (334)
T 2p9w_A 17 DTIYDRTR----------QVFYQSNLYKGRIEVYNPKTQSHFNVVIDG--ASS------------------NGDGEQQMS 66 (334)
T ss_dssp CEEEETTT----------TEEEEEETTTTEEEEECTTTCCEEEECCTT--TCC------------------SSCCSEEEE
T ss_pred CccCcCCC----------CEEEEEeccCCEEEEEcCCCCeEEEEecCC--ccc------------------cCCCcceee
Confidence 78898866 4555555 7999999998764433221000 000 011111127
Q ss_pred EEEE---ccCCCCCEEEEEe-------------CCCeEEEEEcc---CCCCCCCCceeEEee--C-----------CCCC
Q 008363 184 TMEW---STSPPHDYLLAGC-------------HDGTVALWKFV---ASDSSIDSRPLLCFS--A-----------DTLP 231 (568)
Q Consensus 184 ~v~~---s~~~~g~~l~sgs-------------~Dg~I~iwd~~---~~~~~~~~~~~~~~~--~-----------h~~~ 231 (568)
.|.| . ++++++++.. .+..|..+|+. ++ +.+.... . -...
T Consensus 67 Gl~~~~~D--~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg------~~~~~~dL~~~~~~~~~~~g~~~~~ 138 (334)
T 2p9w_A 67 GLSLLTHD--NSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENS------KPVWSVNFEKVQDEFEKKAGKRPFG 138 (334)
T ss_dssp EEEESSSS--SCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTC------CCSEEEESHHHHHHHHHHHSSCCEE
T ss_pred EEEEeccC--CCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCC------CEEEEecCccccccccccccccccC
Confidence 8888 5 5666766543 16789999998 55 3332221 1 1124
Q ss_pred eeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEE
Q 008363 232 IRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVS 305 (568)
Q Consensus 232 V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd 305 (568)
..+|+..++| +..++++.. + |...+........+.+. ......+.|+++|+|..|++....|.|..+|
T Consensus 139 ~nDvavD~~G------naYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 139 VVQSAQDRDG------NSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEEECTTS------CEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred CceeEECCCC------CEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 8899999999 888888887 7 77777664311112111 1122357999999999999986699999999
Q ss_pred cc
Q 008363 306 LL 307 (568)
Q Consensus 306 ~~ 307 (568)
++
T Consensus 213 ~~ 214 (334)
T 2p9w_A 213 VS 214 (334)
T ss_dssp CS
T ss_pred CC
Confidence 85
No 277
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.024 Score=58.14 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=91.1
Q ss_pred ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCc-EEEEEcCC---
Q 008363 182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSAN-VILTAGHG--- 256 (568)
Q Consensus 182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~-~las~s~d--- 256 (568)
|..|+|+ | ++..|.++...+.|+.+|+... . +..+.........|+|++++ + ++++...+
T Consensus 139 P~~lavd--p~~~g~Lyv~d~~~~I~~id~~~~------~-v~~~~~~~~~P~~ia~d~~G------~~lyvad~~~~~~ 203 (430)
T 3tc9_A 139 AVWLSFD--PKNHNHLYLVGEQHPTRLIDFEKE------Y-VSTVYSGLSKVRTICWTHEA------DSMIITNDQNNND 203 (430)
T ss_dssp CCEEEEE--TTEEEEEEEEEBTEEEEEEETTTT------E-EEEEECCCSCEEEEEECTTS------SEEEEEECCSCTT
T ss_pred CCEEEEC--CCCCCeEEEEeCCCcEEEEECCCC------E-EEEEecCCCCcceEEEeCCC------CEEEEEeCCCCcc
Confidence 4788888 5 3446666655588999998754 2 33333445668899999998 6 55554422
Q ss_pred -C-EEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 257 -G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 257 -~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
. +.+++..........+.. ......++++| ++..+++-..++.|+.|+... +.. ..+.....
T Consensus 204 ~~~v~~~~~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~--------~~~------~~~~~~~~ 268 (430)
T 3tc9_A 204 RPNNYILTRESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT--------QET------TPLFTIQD 268 (430)
T ss_dssp SEEEEEEEGGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT--------TEE------EEEEECSS
T ss_pred cceEEEEeCCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC--------CcE------EEEEEcCC
Confidence 2 333444332221122211 22346788999 666555555678999999842 211 01111111
Q ss_pred CCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcC
Q 008363 334 SSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLT 365 (568)
Q Consensus 334 h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~ 365 (568)
......|+|+|++++| ++-...+.|..+++.
T Consensus 269 -~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 -SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp -SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred -CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 2345789999999854 555567889998874
No 278
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.97 E-value=0.2 Score=49.56 Aligned_cols=148 Identities=11% Similarity=0.127 Sum_probs=86.4
Q ss_pred eEEEEccCCCCC--EEEEEeC--CCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEEEcC--
Q 008363 183 LTMEWSTSPPHD--YLLAGCH--DGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILTAGH-- 255 (568)
Q Consensus 183 ~~v~~s~~~~g~--~l~sgs~--Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las~s~-- 255 (568)
..+++.+..++. ++++-.. +.+|.+|++..... ....+..+.+. -...+++++.++| .++++...
T Consensus 115 hGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~--~~~~~~~~~g~~~~~pND~~v~~~G------~fyvt~~~~f 186 (355)
T 3sre_A 115 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEK--SLLHLKTIRHKLLPSVNDIVAVGPE------HFYATNDHYF 186 (355)
T ss_dssp EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTT--EEEEEEEECCTTCSSEEEEEEEETT------EEEEEESCSC
T ss_pred eeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCC--EEEEEeccccCCCCCCceEEEeCCC------CEEecCCcEe
Confidence 566654322443 3444333 56888998875421 12334444332 2357899999998 77777641
Q ss_pred ---------------CC-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCC
Q 008363 256 ---------------GG-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 256 ---------------d~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
.+ |..+|.. . +..+...-..-+.|+|+||+++|+.+. ..+.|+.|++.. .|.
T Consensus 187 td~~~~~~e~~~~~~~g~vyr~d~~---~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~-------~g~ 255 (355)
T 3sre_A 187 IDPYLKSWEMHLGLAWSFVTYYSPN---D-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA-------NWT 255 (355)
T ss_dssp SSHHHHHHHHHTTCCCEEEEEECTT---C-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT-------TSC
T ss_pred CCcccccchhhccCCccEEEEEECC---e-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC-------CCc
Confidence 13 5555553 1 111211123358999999999888875 478999999852 232
Q ss_pred CccCccccceEEEecCCCCEEEEEEec-CCCEEEEEeCC
Q 008363 319 PFAGTKQQGLHLVNCSSFAIWSVQVSR-LTGMVAYCSAD 356 (568)
Q Consensus 319 ~~~~~~~~~l~~~~~h~~~V~~l~~sp-~~~~l~s~s~D 356 (568)
. .....+ ...+..-.+++.+ +|.+.+++..+
T Consensus 256 l------~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 256 L------TPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E------EEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred E------ecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 2 112233 2245567788888 48777766544
No 279
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.96 E-value=0.22 Score=48.58 Aligned_cols=155 Identities=7% Similarity=0.026 Sum_probs=97.7
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
.+|+|.+. ++.++.+-...+.|..+++..... ....+...-.....+++.+.+ ..++++-...+ |.++
T Consensus 38 ~~ld~d~~-~~~lyw~D~~~~~I~r~~~~g~~~-----~~~~~~~~l~~p~glavd~~~-----g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 38 AAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTES-----VQNVVVSGLLSPDGLACDWLG-----EKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEGG-GTEEEEEETTTTEEEEEETTSSSC-----CCEEEEECCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred EEEEEEeC-CCEEEEEECCCCcEEEEEccCCCc-----eEEEEcCCCCCccEEEEEcCC-----CeEEEEECCCCEEEEE
Confidence 78999832 345566666778999999875411 112222223456789998754 15666666666 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI 338 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V 338 (568)
++.... ....+.........+++.|.+.+|+.+.. .+.|..+++. |... ..+ ...-...
T Consensus 107 ~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d---------G~~~--------~~~~~~~l~~P 168 (318)
T 3sov_A 107 NLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD---------GSSR--------FIIINSEIYWP 168 (318)
T ss_dssp ETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSSCSCE
T ss_pred ECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC---------CCCe--------EEEEECCCCCc
Confidence 987642 22223233445689999998777776653 5778888773 3322 122 2222456
Q ss_pred EEEEEecCCCEEEEE-eCCCeEEEEEcCC
Q 008363 339 WSVQVSRLTGMVAYC-SADGTVHRFQLTA 366 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~-s~Dg~v~iwd~~~ 366 (568)
..|+|++++..|..+ +..+.|..+++..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 899999976655555 4567899999864
No 280
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.88 E-value=0.21 Score=55.41 Aligned_cols=154 Identities=9% Similarity=0.080 Sum_probs=94.3
Q ss_pred CccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-----CCCeeEEEEccCCCCCCCCcEEEEE
Q 008363 179 QSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-----TLPIRAVSWAPAESDSDSANVILTA 253 (568)
Q Consensus 179 ~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-----~~~V~~v~~~p~~~~~~~~~~las~ 253 (568)
..| .++... ++| .|..|+. +-|.+||..+.. ........ ...|.+|...+++ .+.+.+
T Consensus 450 ~~v-~~i~~d--~~g-~lwigt~-~Gl~~~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~d~~g------~lWigt 512 (781)
T 3v9f_A 450 LDV-RVFYED--KNK-KIWIGTH-AGVFVIDLASKK------VIHHYDTSNSQLLENFVRSIAQDSEG------RFWIGT 512 (781)
T ss_dssp CCE-EEEEEC--TTS-EEEEEET-TEEEEEESSSSS------CCEEECTTTSSCSCSCEEEEEECTTC------CEEEEE
T ss_pred CeE-EEEEEC--CCC-CEEEEEC-CceEEEeCCCCe------EEecccCcccccccceeEEEEEcCCC------CEEEEE
Confidence 455 777755 565 5666666 568889987652 22211111 3579999999888 666655
Q ss_pred cCCCEEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 254 GHGGLKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 254 s~d~v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
..+||..||..+. . +..+.. ....|.++...++|... .++.+|.|..||... ++. .
T Consensus 513 ~~~Gl~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lW-i~T~~Glv~~~d~~~--------~~~---------~ 572 (781)
T 3v9f_A 513 FGGGVGIYTPDMQ-L-VRKFNQYEGFCSNTINQIYRSSKGQMW-LATGEGLVCFPSARN--------FDY---------Q 572 (781)
T ss_dssp SSSCEEEECTTCC-E-EEEECTTTTCSCSCEEEEEECTTSCEE-EEETTEEEEESCTTT--------CCC---------E
T ss_pred cCCCEEEEeCCCC-e-EEEccCCCCCCCCeeEEEEECCCCCEE-EEECCCceEEECCCC--------CcE---------E
Confidence 5567888998754 2 222221 13468999999888844 445567658888742 222 2
Q ss_pred EEecC----CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 330 LVNCS----SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 330 ~~~~h----~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+... ...|.++...++|.+.++ +..| |..|+..+..+..
T Consensus 573 ~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~~ 616 (781)
T 3v9f_A 573 VFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFYT 616 (781)
T ss_dssp EECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEEE
T ss_pred EccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceEE
Confidence 33211 235778888887775555 4444 7778887665543
No 281
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.86 E-value=0.22 Score=53.16 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.1
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 346 LTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+.+|+.++.||.|+.||..+++..-
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEE
Confidence 56788889999999999999987653
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=96.84 E-value=0.043 Score=59.67 Aligned_cols=112 Identities=10% Similarity=0.029 Sum_probs=72.9
Q ss_pred EEEEccCC-CCCEEEEEeCCC-----------eEEEEEccCCCCCCCCceeEEee-CCCCCeeEEEEccCCCCCCCCcEE
Q 008363 184 TMEWSTSP-PHDYLLAGCHDG-----------TVALWKFVASDSSIDSRPLLCFS-ADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 184 ~v~~s~~~-~g~~l~sgs~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
.+++. + ++.+++.|+.+. .+.+||+.+..+ ..+..+. .+.....++++..++ .++
T Consensus 190 ~~av~--~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w----~~~~~~~~~~~~~~~~~~~~~~g------~ly 257 (656)
T 1k3i_A 190 AAAIE--PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV----SDRTVTVTKHDMFCPGISMDGNG------QIV 257 (656)
T ss_dssp EEEEE--TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB----CCCEEEECSCCCSSCEEEECTTS------CEE
T ss_pred eEEEE--ecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE----EeCcccCCCCCCccccccCCCCC------CEE
Confidence 44544 5 778888887643 588999987754 3333332 234445567888888 899
Q ss_pred EEEcCC-C-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEe-CC-----CcEEEEEccc
Q 008363 251 LTAGHG-G-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSF-DD-----GAMRIVSLLK 308 (568)
Q Consensus 251 as~s~d-~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~d-----g~I~lwd~~~ 308 (568)
+.|+.+ . +.+||..+.. ..+..+.. ...-.+++..++++.++.|+ .+ ..+.+||...
T Consensus 258 v~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 258 VTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 999865 4 9999988652 11112211 12224566778999999988 34 5689999854
No 283
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.81 E-value=0.087 Score=52.90 Aligned_cols=153 Identities=8% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCC
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDP 266 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~ 266 (568)
.+|..|+.+- ++.||.-++... ...+.+..- -..|..+..+|+| .+||..+..+|.|-.+..+
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~------~~Yk~L~~~~~i~f~~i~qlvlSpsG------~lLAl~g~~~V~Vv~LP~~ 96 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTD------SLYHSLNFSRHLVLDDTFHVISSTSG------DLLCLFNDNEIFVMEVPWG 96 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTC------SSCEEEECTTTCCCCTTCEEEECTTS------SEEEEECSSEEEEEECCTT
T ss_pred cCCCEEEEEE-CCEEEEEECCCC------CcceEEecCcccccCceeEEEECCCC------CEEEEecCCeEEEEEecCc
Confidence 4566666665 478888887744 223333322 2357889999999 8999998888888888733
Q ss_pred C---c--------ceeeeC------CCCCCeEEEEEcCC---CCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 267 F---R--------PLWDIH------PAPKFIYGLDWLPD---PGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 267 ~---~--------~~~~~~------~h~~~i~~l~~sp~---~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
. . ..+.+. ....+|..+.|+|- +..|++-..|+.|++||+.. ..+.|. .+. +..
T Consensus 97 ~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~---~L~--k~~ 170 (452)
T 3pbp_A 97 YSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN-SQEKPI---VLN--KPN 170 (452)
T ss_dssp CSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC-TTSCCE---EES--CCC
T ss_pred cccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc-CCCCCc---chh--ccc
Confidence 2 1 011221 12567999999994 56899999999999999976 222222 110 000
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEe--CCCeEEEE
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCS--ADGTVHRF 362 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s--~Dg~v~iw 362 (568)
....+......|.+++|..++-.|...+ ..|.|+-.
T Consensus 171 ~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 171 NSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 1112223346788999999775555544 67777654
No 284
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.79 E-value=0.41 Score=49.58 Aligned_cols=158 Identities=9% Similarity=0.144 Sum_probs=92.0
Q ss_pred eEEEEccC-CCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 104 WDVKWKPY-NAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 104 ~~v~~sp~-~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
+.|+|.|. .. +++++-...+.|++.|+.++.....+... ...... |
T Consensus 142 ~~la~dp~~~~---------~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~-----------------------~~~~~~-p 188 (496)
T 3kya_A 142 GRLAFDPLNKD---------HLYICYDGHKAIQLIDLKNRMLSSPLNIN-----------------------TIPTNR-I 188 (496)
T ss_dssp EEEEEETTEEE---------EEEEEEETEEEEEEEETTTTEEEEEECCT-----------------------TSSCSB-E
T ss_pred CEEEEccCCCC---------EEEEEECCCCeEEEEECCCCEEEEEEccC-----------------------ccccCC-C
Confidence 37899984 42 44454444567888888875544322100 111223 3
Q ss_pred eEEEE-------ccCCCCCEEEEEeCCC-------eEEEEEccC-CCCC--CCCceeEEeeCCCCCeeEEEEccCCCCCC
Q 008363 183 LTMEW-------STSPPHDYLLAGCHDG-------TVALWKFVA-SDSS--IDSRPLLCFSADTLPIRAVSWAPAESDSD 245 (568)
Q Consensus 183 ~~v~~-------s~~~~g~~l~sgs~Dg-------~I~iwd~~~-~~~~--~~~~~~~~~~~h~~~V~~v~~~p~~~~~~ 245 (568)
..|+| + ++|+.|+++...+ .|.+++... +... .....+..+ .....++++|++
T Consensus 189 ~~ia~~~~~~~~d--~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~---- 258 (496)
T 3kya_A 189 RSIAFNKKIEGYA--DEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPIN---- 258 (496)
T ss_dssp EEEEECCCBTTTB--CTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTT----
T ss_pred cEEEEeecccccC--CCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCC----
Confidence 88998 8 7888666666554 255665333 1111 001222222 234577889954
Q ss_pred CCcEEEEEcCCC-EEEEECC-------CCCc-------------ceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEE
Q 008363 246 SANVILTAGHGG-LKFWDIR-------DPFR-------------PLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRI 303 (568)
Q Consensus 246 ~~~~las~s~d~-v~lwD~~-------~~~~-------------~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~l 303 (568)
..++++-..++ |..+|+. ++.. .+..+ +.....+.|+|+|+|++|+.+ +....|+.
T Consensus 259 -g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~k 336 (496)
T 3kya_A 259 -GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMR 336 (496)
T ss_dssp -CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred -CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEE
Confidence 16677777777 9999987 4422 12222 223345899999999976666 45788988
Q ss_pred EEc
Q 008363 304 VSL 306 (568)
Q Consensus 304 wd~ 306 (568)
++.
T Consensus 337 id~ 339 (496)
T 3kya_A 337 SDY 339 (496)
T ss_dssp EEE
T ss_pred Eec
Confidence 776
No 285
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=96.79 E-value=0.17 Score=53.91 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=21.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAI 148 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l 148 (568)
..|++++.|+.|..+|..+++.+-..
T Consensus 116 ~~v~v~~~dg~l~alD~~tG~~~W~~ 141 (571)
T 2ad6_A 116 GQIVKKQANGHLLALDAKTGKINWEV 141 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEe
Confidence 47888888999999999998876543
No 286
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.77 E-value=0.44 Score=46.12 Aligned_cols=197 Identities=14% Similarity=0.213 Sum_probs=121.1
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
.+||.-. ..+|+|+|+++.+.++.. .....| .--.|- .+ +.|+-.+ +
T Consensus 79 ~ViALra-g~~LQiFnletK~klks~---------------------------~~~e~V-vfWkWi--s~-~~L~lVT-~ 125 (365)
T 2xzh_A 79 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D 125 (365)
T ss_dssp SEEEEEE-TTEEEEEETTTTEEEEEE---------------------------ECSSCE-EEEEEC--SS-SEEEEEE-S
T ss_pred cEEEEec-CCeEEEechHHhhhhcce---------------------------ecCCcc-EEEEec--CC-CeEEEEc-C
Confidence 6777776 578999999998777653 122344 556676 34 5666665 5
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC----CCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT----LPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL 270 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~ 270 (568)
..|.-|++... ..|...|..|. ..|..-..+++. ++++-.+- .| +.||..... .-
T Consensus 126 taVyHWs~~~~-----s~P~kvFdR~~~L~~~QIInY~~d~~~------kW~~l~GI~~~~~~v~G~mQLYS~er~--~s 192 (365)
T 2xzh_A 126 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRK--VS 192 (365)
T ss_dssp SEEEEEESSTT-----CCCEEEEECCGGGTTCEEEEEEECTTS------CEEEEEEEEEETTEEEEEEEEEETTTT--EE
T ss_pred CcEEEEcccCC-----CCCceeeecchhcccceEEEEEECCCC------CEEEEEeEeccCCccceeEEEEeeccc--cc
Confidence 68999999753 37888887764 346666777777 77665432 25 889988753 33
Q ss_pred eeeCCCCCCeEEEEEc--CCCC-EEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEec---CCCCEEEE
Q 008363 271 WDIHPAPKFIYGLDWL--PDPG-CVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSV 341 (568)
Q Consensus 271 ~~~~~h~~~i~~l~~s--p~~~-~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l 341 (568)
..+.+|.+....+.+. +... .++.+.. .+.+++.++..... ...++. .+.+..+.. ..+-..++
T Consensus 193 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~----~~~~f~---kk~vdi~fppea~~DFPVam 265 (365)
T 2xzh_A 193 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT----GNQPFP---KKAVDVFFPPEAQNDFPVAM 265 (365)
T ss_dssp EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCT----TCCCCC---CEEEEECCCTTCTTCCEEEE
T ss_pred ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCC----CCCCcc---cccceeeCCccccCCceEEE
Confidence 5566765433222221 1111 2222222 35899999844210 111110 011122221 23345688
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++....+...+.-|.|++||++++.....
T Consensus 266 qvs~kygviyviTK~G~ihlyDleTgt~i~~ 296 (365)
T 2xzh_A 266 QISEKHDVVFLITKYGYIHLYDLETGTCIYM 296 (365)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EecccCCEEEEEeCCcEEEEEEcccCcEEEE
Confidence 9999999999999999999999999876544
No 287
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.69 E-value=0.92 Score=48.73 Aligned_cols=198 Identities=10% Similarity=0.005 Sum_probs=117.6
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
++ .|+|.+... .++.+-..++.|..+++........+ . .+-..+.
T Consensus 39 ~~-~l~~d~~~~---------~lywtD~~~~~I~r~~~~g~~~~~v~-~------------------------~g~~~P~ 83 (628)
T 4a0p_A 39 AS-ALDFDVTDN---------RIYWTDISLKTISRAFMNGSALEHVV-E------------------------FGLDYPE 83 (628)
T ss_dssp EE-EEEEETTTT---------EEEEEETTTTEEEEEETTSCSCEEEE-C------------------------SSCSCCC
T ss_pred eE-EEEEECCCC---------EEEEEECCCCeEEEEECCCCCcEEEE-e------------------------CCCCCcc
Confidence 45 899998763 45555566788988888763322111 0 1111111
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EE
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LK 259 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~ 259 (568)
+.+++|. .++++++-...+.|.+.++... .....+...-.....|++.|.. ..++.+-.. .. |.
T Consensus 84 GlAvD~~---~~~LY~tD~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~iavdp~~-----G~lY~tD~g~~~~I~ 149 (628)
T 4a0p_A 84 GMAVDWL---GKNLYWADTGTNRIEVSKLDGQ------HRQVLVWKDLDSPRALALDPAE-----GFMYWTEWGGKPKID 149 (628)
T ss_dssp EEEEETT---TTEEEEEETTTTEEEEEETTST------TCEEEECSSCCCEEEEEEETTT-----TEEEEEECSSSCEEE
T ss_pred eEEEEeC---CCEEEEEECCCCEEEEEecCCC------cEEEEEeCCCCCcccEEEccCC-----CeEEEeCCCCCCEEE
Confidence 2556654 4456666666788999998754 2212222334557899999854 155555422 34 88
Q ss_pred EEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 260 FWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 260 lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
..++...... ..+ ..-...+.|++++++..|+.+. ..+.|..+|+. |... ..+...-...
T Consensus 150 r~~~dG~~~~-~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~d---------G~~~--------~v~~~~l~~P 210 (628)
T 4a0p_A 150 RAAMDGSERT-TLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNML---------GLNR--------EVIADDLPHP 210 (628)
T ss_dssp EEETTSCSCE-EEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETT---------SCSC--------EEEEECCSCE
T ss_pred EEeCCCCceE-EEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCC---------CCce--------EEeeccCCCc
Confidence 8888754322 222 2344578999999888777774 47889999983 2211 1233333345
Q ss_pred EEEEEecCCCEEEEEeCCCeEEEEEcCCCe
Q 008363 339 WSVQVSRLTGMVAYCSADGTVHRFQLTAKA 368 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~ 368 (568)
.+|++.. +.++++-...+.|...|..++.
T Consensus 211 ~glav~~-~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 211 FGLTQYQ-DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence 6777764 4444555457888888876553
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.66 E-value=0.016 Score=63.40 Aligned_cols=151 Identities=9% Similarity=-0.068 Sum_probs=85.6
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEEEECCCCCcc
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKFWDIRDPFRP 269 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~lwD~~~~~~~ 269 (568)
.+.++++-...+.|.++++... .....+.........|++.|.+ ..++++-... + |..+++......
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~------~~~~l~~~~~~~P~giavDp~~-----g~ly~td~~~~~~I~~~~~dG~~~~ 532 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGV------KRKTLFREQGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVDIY 532 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSC------CEEEECCCSSCCCCCEECCSSS-----SCCEECCCSSSCCEEBCCSSSCCCC
T ss_pred CCcEEEEeccCCeEEEEecCCC------ceEEEEeCCCCCcceEEEccCC-----CcEEEcccCCCCeEEEEeCCCCCee
Confidence 3455566566788999988744 2222222223456788999865 1455544332 4 888887644222
Q ss_pred eeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEec---CCCCEEEEEEec
Q 008363 270 LWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC---SSFAIWSVQVSR 345 (568)
Q Consensus 270 ~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~---h~~~V~~l~~sp 345 (568)
+ .+...-...+.|+|+|++..|+.+ +..+.|..+|+. |... ..+.. .-.....|++..
T Consensus 533 ~-l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d---------G~~~--------~~~~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 533 S-LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN---------GGNR--------KTILEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp E-ESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSS---------SSCC--------EEECCCSSSCSSCCCCEEET
T ss_pred E-EEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccC---------CCce--------EEEEecCCcCCCceEeEEEC
Confidence 2 121222345789999987766666 457789999883 2111 12211 112234455544
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 346 LTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
+ .++++....+.|..++..++.....
T Consensus 595 ~-~lywtd~~~~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 595 D-KVFWTDIINEAIFSANRLTGSDVNL 620 (699)
T ss_dssp T-EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred C-EEEEEeCCCCeEEEEEccCCCceEE
Confidence 3 4555555668899999876665443
No 289
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.58 E-value=0.79 Score=50.61 Aligned_cols=160 Identities=9% Similarity=-0.015 Sum_probs=98.0
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
..|+|.+. .+.++++-...+.|+.+++..... .......+.........|++.+.+ .+++++-...+ |.+.
T Consensus 427 ~gl~~d~~-~~~lY~sD~~~~~I~~~~l~g~~~--~~~~~~vi~~~l~~P~GLAvD~~~-----~~LY~tD~~~~~I~v~ 498 (791)
T 3m0c_C 427 VALDTEVA-SNRIYWSDLSQRMICSTQLDRAHG--VSSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSVA 498 (791)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEEC----------CEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred EEEeeccc-CCeeEEeeccceeEEEEeccCCCC--CcceeEEEecCCCCcceeeeeecC-----CcEEEEecCCCeEEEE
Confidence 77888722 344556666678899888874311 012233343344567889999876 25666666666 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAI 338 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V 338 (568)
++..... ...+...-.....|++.|.+.+|+.+.. .+.|...++. |... ..+ ...-...
T Consensus 499 ~ldG~~~-~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d---------G~~~--------~~lv~~~l~~P 560 (791)
T 3m0c_C 499 DTKGVKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQWP 560 (791)
T ss_dssp ETTSSSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCCE--------EEEECSSCSCE
T ss_pred eCCCCeE-EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecC---------CCce--------EEEEeCCCCCc
Confidence 9986532 2222233345789999998777777643 3678888873 3322 222 2223567
Q ss_pred EEEEEecCCCEEEEEe-CCCeEEEEEcCCCe
Q 008363 339 WSVQVSRLTGMVAYCS-ADGTVHRFQLTAKA 368 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~~ 368 (568)
..|++++.+..|+.+. ..+.|..+++....
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 8999998876666554 45679999886543
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.56 E-value=0.76 Score=46.26 Aligned_cols=197 Identities=14% Similarity=0.213 Sum_probs=122.5
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
++||.=. ..++.|+|+++.+.++.. .....| .--.|- .+ +.|+..+ +
T Consensus 78 ~iiALra-g~~lQiFnle~K~klks~---------------------------~~~e~V-vfWkWi--s~-~~l~lVT-~ 124 (494)
T 1bpo_A 78 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D 124 (494)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEE---------------------------ECSSCC-CEEEEE--ET-TEEEEEC-S
T ss_pred cEEEEec-CCeEEEEchHHhhhhcce---------------------------ecCCCc-eEEEec--CC-CeEEEEc-C
Confidence 6777665 688999999997777653 112345 556776 33 4666655 5
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCC----CCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADT----LPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL 270 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~ 270 (568)
..|.-|++... ..|+..|..|. ..|..-..+++. ++++-.|- .| +.+|..... .-
T Consensus 125 taVyHWsi~~~-----s~P~kvFdR~~~L~~~QIInY~~d~~~------kW~~l~GI~~~~~~v~G~mQLYS~er~--~s 191 (494)
T 1bpo_A 125 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRK--VS 191 (494)
T ss_dssp SEEEEEESSSS-----CCCEEEEECCGGGTTCEEEEEEECTTS------SEEEEEEEEEETTEEEEEEEEEESTTC--CE
T ss_pred CeeEEecccCC-----CCchhheecchhcccceEEEEEECCCC------CeEEEEeecccCCcccceEEEeecccc--cc
Confidence 68999999753 36888887764 346666777777 77764432 25 889988754 33
Q ss_pred eeeCCCCCCeEEEEEcCC--C-CEEEEEeC---CCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEE
Q 008363 271 WDIHPAPKFIYGLDWLPD--P-GCVILSFD---DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSV 341 (568)
Q Consensus 271 ~~~~~h~~~i~~l~~sp~--~-~~l~s~~~---dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l 341 (568)
..+.+|.+....+.+.-+ . ..++.+.. .+.++|.++..... .+.++. .+.+..+. ...+-..++
T Consensus 192 Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~----~~~~f~---kk~vdv~fppe~~~DFPvam 264 (494)
T 1bpo_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPT----GNQPFP---KKAVDVFFPPEAQNDFPVAM 264 (494)
T ss_dssp EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCT----TCCCCC---CEEEECCCCTTSTTCCEEEE
T ss_pred chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCcc----CCCCcc---ceeeeeeCCcccccCceeEE
Confidence 556677654433333211 1 22333333 37899999854210 011110 01111111 122344688
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++....+...+.-|.|++||++++.....
T Consensus 265 qvs~kygviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp EEETTTTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EecccCCEEEEEecCceEEEEecccceeeee
Confidence 9999999999999999999999999876544
No 291
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.47 E-value=0.17 Score=54.06 Aligned_cols=200 Identities=11% Similarity=0.061 Sum_probs=111.1
Q ss_pred cEEEEEeC-CCcEEEEEC-CCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCE----E
Q 008363 123 GYLAVLLG-NGSLEVWEV-PLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDY----L 196 (568)
Q Consensus 123 ~~las~s~-dg~V~iwd~-~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~----l 196 (568)
..|.+++. ++.|.-+|. .+++.+-.+....... .......+ .+...++.. |.+.. |
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~--------------~~~~~~~~--~~~~g~av~--p~~g~~~~rV 124 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPA--------------ARAVACCD--LVNRGLAYW--PGDGKTPALI 124 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGG--------------GGGGCSSC--SCCCCCEEE--CCCSSSCCEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcc--------------cccccccc--ccccceEEE--ecCCcceeEE
Confidence 46777777 889999999 8888765542111000 00000000 001223332 22334 8
Q ss_pred EEEeCCCeEEEEEccCCCCCCCCceeEEeeCCC----CCeeE-EEEccCCCCCCCCcEEEEEc-----CCC-EEEEECCC
Q 008363 197 LAGCHDGTVALWKFVASDSSIDSRPLLCFSADT----LPIRA-VSWAPAESDSDSANVILTAG-----HGG-LKFWDIRD 265 (568)
Q Consensus 197 ~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~----~~V~~-v~~~p~~~~~~~~~~las~s-----~d~-v~lwD~~~ 265 (568)
++++.|+.|..+|..++ +.+....... ..+.+ ..+ .++ .+++.++ .++ |+.+|..+
T Consensus 125 ~v~t~dg~l~AlDa~TG------~~~W~~~~~~~~~~~~~~ssP~v-~~g------~V~vg~~g~e~g~~g~v~A~D~~T 191 (599)
T 1w6s_A 125 LKTQLDGNVAALNAETG------ETVWKVENSDIKVGSTLTIAPYV-VKD------KVIIGSSGAELGVRGYLTAYDVKT 191 (599)
T ss_dssp EEECTTSEEEEEETTTC------CEEEEEECCCGGGTCBCCSCCEE-ETT------EEEECCBCGGGTCCCEEEEEETTT
T ss_pred EEEcCCCEEEEEECCCC------CEEEeecCCCCCccceeecCCEE-ECC------EEEEEecccccCCCCeEEEEECCC
Confidence 88889999999999877 5554433211 01111 111 133 3444332 367 99999998
Q ss_pred CCcceeeeCCCCCC-------------------------------------e-EEEEEcCCCCEEEEEeCC---------
Q 008363 266 PFRPLWDIHPAPKF-------------------------------------I-YGLDWLPDPGCVILSFDD--------- 298 (568)
Q Consensus 266 ~~~~~~~~~~h~~~-------------------------------------i-~~l~~sp~~~~l~s~~~d--------- 298 (568)
+ +.++.+...... + ..+++.+....++.+..+
T Consensus 192 G-~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r 270 (599)
T 1w6s_A 192 G-EQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMR 270 (599)
T ss_dssp C-CEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGS
T ss_pred C-cEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCccc
Confidence 8 555544321110 1 135666777788887655
Q ss_pred -------CcEEEEEccccccCCCCCCCCccCccccceEEEec--C--------CCCEEEEEEe-cCC---CEEEEEeCCC
Q 008363 299 -------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC--S--------SFAIWSVQVS-RLT---GMVAYCSADG 357 (568)
Q Consensus 299 -------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~--h--------~~~V~~l~~s-p~~---~~l~s~s~Dg 357 (568)
+.|..+|.+ +|+.++ .++. | ..++. +... .+| ..|+.++.+|
T Consensus 271 ~gd~~y~~sv~Ald~~--------TG~~~W--------~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G 333 (599)
T 1w6s_A 271 PGDNKWTMTIFGRDAD--------TGEAKF--------GYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG 333 (599)
T ss_dssp CSCCTTSSEEEEEETT--------TCCEEE--------EEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS
T ss_pred CCCccccceEEEEeCC--------CCceee--------EeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc
Confidence 378888884 576543 3332 2 12222 2222 456 5678889999
Q ss_pred eEEEEEcCCCeeec
Q 008363 358 TVHRFQLTAKAVEK 371 (568)
Q Consensus 358 ~v~iwd~~~~~~~~ 371 (568)
.++++|..+++..-
T Consensus 334 ~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 334 IVYTLDRTDGALVS 347 (599)
T ss_dssp EEEEEETTTCCEEE
T ss_pred EEEEEECCCCCEee
Confidence 99999999887653
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.42 E-value=0.38 Score=46.98 Aligned_cols=151 Identities=12% Similarity=0.181 Sum_probs=83.1
Q ss_pred CcCccceEEEEccCCCCCEEEEEeCCCeEE-EEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 177 GTQSIPLTMEWSTSPPHDYLLAGCHDGTVA-LWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 177 h~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~-iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
+...+ ..+.+. +++.+++++. +|.|. -+|-.... ...+ -......+..+++.+++ .+++.+.
T Consensus 161 ~~~~~-~~~~~~--~~~~~~~~g~-~G~~~~S~d~gG~t----W~~~--~~~~~~~~~~~~~~~~g------~~~~~~~- 223 (327)
T 2xbg_A 161 AIGVM-RNLNRS--PSGEYVAVSS-RGSFYSTWEPGQTA----WEPH--NRTTSRRLHNMGFTPDG------RLWMIVN- 223 (327)
T ss_dssp CCCCE-EEEEEC--TTSCEEEEET-TSSEEEEECTTCSS----CEEE--ECCSSSCEEEEEECTTS------CEEEEET-
T ss_pred CCcce-EEEEEc--CCCcEEEEEC-CCcEEEEeCCCCCc----eeEC--CCCCCCccceeEECCCC------CEEEEeC-
Confidence 34456 788887 6777776665 45443 33321111 1222 12345678899999887 6665554
Q ss_pred CC-EEEEECCCCCcceeeeC----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 256 GG-LKFWDIRDPFRPLWDIH----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 256 d~-v~lwD~~~~~~~~~~~~----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
++ +++++...+ ..-..+. .+...+..+.+.+++..+++ +.+|.| ++... .|+.. ..
T Consensus 224 ~G~~~~s~~D~G-~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~D--------gG~tW--------~~ 284 (327)
T 2xbg_A 224 GGKIAFSDPDNS-ENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQD--------GGQTW--------QQ 284 (327)
T ss_dssp TTEEEEEETTEE-EEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESS--------TTSSC--------EE
T ss_pred CceEEEecCCCC-CeeEeccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCC--------CCccc--------EE
Confidence 55 777642211 1111111 12235889999988775555 456766 33331 23322 12
Q ss_pred Ee---cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEc
Q 008363 331 VN---CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 331 ~~---~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~ 364 (568)
+. .+...++++.|.+++ .+++++.+|.|.-++-
T Consensus 285 ~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 285 DVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp CGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred cCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 22 123456788887544 4677778998776653
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.29 E-value=0.12 Score=52.94 Aligned_cols=154 Identities=8% Similarity=0.050 Sum_probs=90.0
Q ss_pred ceEEEEccCCC--CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC---
Q 008363 182 PLTMEWSTSPP--HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--- 256 (568)
Q Consensus 182 ~~~v~~s~~~~--g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--- 256 (568)
|..|+|. ++ +..|..+...+.|+.+|+.++ . +..+.........|+|++++ .++++...+
T Consensus 141 P~gvavd--~~s~~g~Lyv~D~~~~I~~id~~~g------~-v~~~~~~~~~P~giavd~dG------~lyVad~~~~~~ 205 (433)
T 4hw6_A 141 IWRMMFD--PNSNYDDLYWVGQRDAFRHVDFVNQ------Y-VDIKTTNIGQCADVNFTLNG------DMVVVDDQSSDT 205 (433)
T ss_dssp CCEEEEC--TTTTTCEEEEECBTSCEEEEETTTT------E-EEEECCCCSCEEEEEECTTC------CEEEEECCSCTT
T ss_pred CceEEEc--cccCCCEEEEEeCCCCEEEEECCCC------E-EEEeecCCCCccEEEECCCC------CEEEEcCCCCcc
Confidence 4789998 53 335555544488999998654 3 33343445568999999999 766666422
Q ss_pred --CEEEEECCCCCcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 257 --GLKFWDIRDPFRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 257 --~v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
++...+..........+. .-.....++++| ++..+++-..++.|+.+|.. +|... ..+... +
T Consensus 206 ~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~--------~g~~~-----~~~~~~-~ 270 (433)
T 4hw6_A 206 NTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPA--------TGTLT-----EEEVMM-D 270 (433)
T ss_dssp SEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTT--------TCCEE-----EEEEEC-S
T ss_pred cceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECC--------CCeEE-----EEEecc-C
Confidence 244444433221111111 123346788999 66655555567889999883 23321 001111 1
Q ss_pred CCCCEEEEEEecCCCEE-EEEeCCCeEEEEEcC
Q 008363 334 SSFAIWSVQVSRLTGMV-AYCSADGTVHRFQLT 365 (568)
Q Consensus 334 h~~~V~~l~~sp~~~~l-~s~s~Dg~v~iwd~~ 365 (568)
....-..++|+|++.+| ++-...+.|+.+++.
T Consensus 271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 12223469999999855 444556889998875
No 294
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.13 E-value=0.14 Score=56.51 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=82.3
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCC-----CcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcC
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGN-----GSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQ 179 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~d-----g~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~ 179 (568)
.++|+|++ +.|+....| ..|.++++.+++....+ +.. ..+..
T Consensus 225 ~~~WspDg----------~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l---------------v~~--------~~~~~ 271 (751)
T 2xe4_A 225 EIVWGPDH----------TSLFYVTKDETLRENKVWRHVMGKLQSEDVC---------------LYE--------EHNPL 271 (751)
T ss_dssp CCEECSST----------TEEEEEEECTTCCEEEEEEEETTSCGGGCEE---------------EEE--------CCCTT
T ss_pred eEEEecCC----------CEEEEEEECCCCCCCEEEEEECCCCchhcEE---------------EEe--------cCCCc
Confidence 68899999 566666654 25777888765422111 000 01112
Q ss_pred ccceEEEEccCCCCCEEEEEeC---CCeEEEEEccCCCCCCCCce-eEEe-eCCCCCeeEEEEccCCCCCCCCcEEEEEc
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCH---DGTVALWKFVASDSSIDSRP-LLCF-SADTLPIRAVSWAPAESDSDSANVILTAG 254 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~---Dg~I~iwd~~~~~~~~~~~~-~~~~-~~h~~~V~~v~~~p~~~~~~~~~~las~s 254 (568)
.. ..+.|+ ++|++|+..+. ...|.++|+.++.. .. +..+ ........++.|+..+ .+++.+.
T Consensus 272 ~~-~~~~~S--pDg~~l~~~~~~~~~~~l~~~d~~~~~~----~~~~~~l~~~~~~~~~s~~~~~g~------~l~~~t~ 338 (751)
T 2xe4_A 272 FS-AFMYKA--ADTNTLCIGSQSPETAEVHLLDLRKGNA----HNTLEIVRPREKGVRYDVQMHGTS------HLVILTN 338 (751)
T ss_dssp CE-EEEEEC--TTSSEEEEEEECSSCEEEEEEESSSCTT----CCCEEESSCCCTTCCEEEEEETTT------EEEEEEC
T ss_pred eE-EEEEEC--CCCCEEEEEecCCCCceEEEEECCCCCC----CceeEEeecCCCCceEEEeeeeCC------EEEEEeC
Confidence 23 677898 89998876653 33577888875411 22 1223 3345566777766554 5666655
Q ss_pred CC----C-EEEEECCCCCcceee-eCCCCC--CeEEEEEcCCCCEEEE-EeCCCcEEEEE
Q 008363 255 HG----G-LKFWDIRDPFRPLWD-IHPAPK--FIYGLDWLPDPGCVIL-SFDDGAMRIVS 305 (568)
Q Consensus 255 ~d----~-v~lwD~~~~~~~~~~-~~~h~~--~i~~l~~sp~~~~l~s-~~~dg~I~lwd 305 (568)
.+ . |..+|+.++ ..... +..+.. .+..+.+. +..|+. ...++..+||-
T Consensus 339 ~~~a~~~~L~~~d~~~~-~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 339 EGGAVNHKLLIAPRGQP-SDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp TTTCTTCEEEEEETTST-TCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred CCCCCCcEEEEEcCCCc-ccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 43 2 777777642 11122 223333 34455554 555554 45577655543
No 295
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.12 E-value=0.54 Score=50.03 Aligned_cols=26 Identities=15% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 346 LTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 346 ~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
.+.+++.++.||.|+.||..+++..-
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEE
Confidence 46788889999999999999887653
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.08 E-value=1.2 Score=43.61 Aligned_cols=192 Identities=9% Similarity=0.104 Sum_probs=109.3
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccC--CCCC---EEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTS--PPHD---YLL 197 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~--~~g~---~l~ 197 (568)
.+++.....+-|.+||+ .++.++.+.. +.. ..|+.-|. -.|. +++
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~-------------------------g~~----nnVD~r~~~~l~g~~~dla~ 90 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT-------------------------GKL----NNVDIRYDFPLNGKKVDIAA 90 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC-------------------------SCE----EEEEEEEEEEETTEEEEEEE
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC-------------------------CCc----ccEEEecccccCCceEeEEE
Confidence 56666677889999999 7787776521 111 22222110 1122 233
Q ss_pred EEeC---CCeEEEEEccCCCCCCCCceeEEeeC------CC-CCeeEEEE--ccCCCCCCCCcEEEEEcCCC-EEEEECC
Q 008363 198 AGCH---DGTVALWKFVASDSSIDSRPLLCFSA------DT-LPIRAVSW--APAESDSDSANVILTAGHGG-LKFWDIR 264 (568)
Q Consensus 198 sgs~---Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~-~~V~~v~~--~p~~~~~~~~~~las~s~d~-v~lwD~~ 264 (568)
+... +++|.+|++.... ..+..+.. .. ..+..+++ +|.. ...+++....++ +..|++.
T Consensus 91 as~R~~~~n~l~vf~iDp~~-----~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~----g~~yafV~~k~G~~~q~~l~ 161 (355)
T 3amr_A 91 ASNRSEGKNTIEIYAIDGKN-----GTLQSMTDPDHPIATAINEVYGFTLYHSQKT----GKYYAMVTGKEGEFEQYELK 161 (355)
T ss_dssp EEECSTTCCEEEEEEECTTT-----CCEEECSCTTSCEECCCSSCCCEEEEECTTT----CCEEEEEECSSSEEEEEEEE
T ss_pred EeCCCCCCCeEEEEEECCCC-----CceeeccccccCcCCCCCCeeEEEEEecCCC----CcEEEEEECCCCeEEEEEEE
Confidence 3333 4789999885321 22333311 11 55677887 6643 112555666667 9998884
Q ss_pred C---CC---cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe-cC-CC
Q 008363 265 D---PF---RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CS-SF 336 (568)
Q Consensus 265 ~---~~---~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h-~~ 336 (568)
. +. +.++.+.- .+.+..+...+....|+.+-++.-|..|+.+... ..++ ..+..+. ++ ..
T Consensus 162 ~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~---~~~~--------~~v~~~~~g~l~a 229 (355)
T 3amr_A 162 ADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG---GSNG--------TVIDRADGRHLTR 229 (355)
T ss_dssp ECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS---CSCC--------EEEEEBSSSSBCS
T ss_pred eCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC---CCCc--------eEEEEecCCcccc
Confidence 3 11 34455542 4568889999999999999998666555543210 0011 1222321 22 24
Q ss_pred CEEEEEEe--cCCC-EEEEEe-CCCeEEEEEcC
Q 008363 337 AIWSVQVS--RLTG-MVAYCS-ADGTVHRFQLT 365 (568)
Q Consensus 337 ~V~~l~~s--p~~~-~l~s~s-~Dg~v~iwd~~ 365 (568)
.+..|++- ++++ +|++++ .+.++.+||..
T Consensus 230 DvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 230 DIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp CEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred CcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 67888884 4444 555555 67899999995
No 297
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.79 E-value=1.8 Score=43.40 Aligned_cols=115 Identities=15% Similarity=0.198 Sum_probs=77.5
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCC----c--eeEEeeC------CCCCeeEEEEccCCCCCCCCcEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDS----R--PLLCFSA------DTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~----~--~~~~~~~------h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..+..+ |+|++||..+ +..|.|-.+..+...... . ..+.+.- ...+|..+.|+|-+- ++..|
T Consensus 69 ~qlvlS--psG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~---~ds~L 142 (452)
T 3pbp_A 69 FHVISS--TSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSY---RDSCI 142 (452)
T ss_dssp CEEEEC--TTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBG---GGCEE
T ss_pred eEEEEC--CCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccC---CCCeE
Confidence 667766 8898988886 568999998743221111 1 1223322 257799999999861 23467
Q ss_pred EEEcCCC-EEEEECCCCC-cceeeeC---------CCCCCeEEEEEcCCCCEEEEEe--CCCcEEEE
Q 008363 251 LTAGHGG-LKFWDIRDPF-RPLWDIH---------PAPKFIYGLDWLPDPGCVILSF--DDGAMRIV 304 (568)
Q Consensus 251 as~s~d~-v~lwD~~~~~-~~~~~~~---------~h~~~i~~l~~sp~~~~l~s~~--~dg~I~lw 304 (568)
++-..|+ |++||+.... .|. .+. .....|.+++|.+++-.|++.+ ..|.|+-.
T Consensus 143 VVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 143 VVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 7777776 9999998632 333 222 2235688999999998888866 78888754
No 298
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=95.73 E-value=1 Score=48.21 Aligned_cols=201 Identities=10% Similarity=-0.023 Sum_probs=107.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
++ .|+|++.+. .++.+-...+.|..+++........+.. .+- ..
T Consensus 42 ~~-~ld~~~~~~---------~ly~sD~~~~~I~r~~~~g~~~~~~v~~------------------------~~~-~~- 85 (619)
T 3s94_A 42 AA-AVDFVFSHG---------LIYWSDVSEEAIKRTEFNKTESVQNVVV------------------------SGL-LS- 85 (619)
T ss_dssp EE-EEEEETTTT---------EEEEEETTTTEEEEEEC-----CEEEEC------------------------SSC-SC-
T ss_pred eE-EEEEEeCCC---------EEEEEECCCCeEEEEEccCCCceEEEEe------------------------CCC-CC-
Confidence 44 899998762 3444444567888888876421111100 110 11
Q ss_pred ceEEEEccCC-CCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-E
Q 008363 182 PLTMEWSTSP-PHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-L 258 (568)
Q Consensus 182 ~~~v~~s~~~-~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v 258 (568)
|..|++. . .+.++++-...+.|.+.++... .....+...-.....|++.|.+ ..++.|--. .. |
T Consensus 86 P~GlAvD--~~~~~ly~~d~~~~~I~v~~~dG~------~~~~l~~~~l~~P~~Iavdp~~-----g~ly~tD~g~~~~I 152 (619)
T 3s94_A 86 PDGLACD--WLGEKLYWTDSETNRIEVSNLDGS------LRKVLFWQELDQPRAIALDPSS-----GFMYWTDWGEVPKI 152 (619)
T ss_dssp EEEEEEE--TTTTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCCEEEETTT-----TEEEEEECSSSCEE
T ss_pred cCeEEEE--ecCCEEEEEeCCCCEEEEEECCCC------CEEEEEeCCCCCCceEEEecCC-----CeEEEeccCCCCEE
Confidence 2444444 3 3456666667889999998754 2222222344557899999975 145555422 34 7
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA 337 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~ 337 (568)
...++... .........-...+.|++++++..|+.+ ...+.|..+|+. |... .. ...+.-..
T Consensus 153 ~r~~~dG~-~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d---------G~~~-----~~--~~~~~~~~ 215 (619)
T 3s94_A 153 ERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD---------GTNR-----QA--VVKGSLPH 215 (619)
T ss_dssp EEEETTSC-SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSS---------CCEE-----C-----------
T ss_pred EEEECCCC-ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC---------CCcc-----EE--EEeCCCCC
Confidence 77777644 2222222234456899999987777776 446788888873 2211 00 11111111
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
..+|++..+ .++++-...+.|...|..++..
T Consensus 216 P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 PFALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp CCCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred ceEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 235566544 3444444567888888876643
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=95.73 E-value=0.52 Score=46.62 Aligned_cols=139 Identities=8% Similarity=0.023 Sum_probs=80.3
Q ss_pred CCCeEEEEEccCCCCCCCCceeEEeeC-----CCCCeeEEEEccC--CCCCCCCcEEEEEcC--CC-EEEEECCCCCcc-
Q 008363 201 HDGTVALWKFVASDSSIDSRPLLCFSA-----DTLPIRAVSWAPA--ESDSDSANVILTAGH--GG-LKFWDIRDPFRP- 269 (568)
Q Consensus 201 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~-----h~~~V~~v~~~p~--~~~~~~~~~las~s~--d~-v~lwD~~~~~~~- 269 (568)
.+|.|.++|..+... ....+ .+.+ .......|.+.++ + ...+++.-.. +. |.+|++......
T Consensus 81 ~~G~I~~~d~~~~~~--~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg----~~~L~Vvnh~~~~s~ielf~~d~~~~~~ 153 (355)
T 3sre_A 81 KSGKILLMDLNEKEP--AVSEL-EIIGNTLDISSFNPHGISTFIDDDN----TVYLLVVNHPGSSSTVEVFKFQEEEKSL 153 (355)
T ss_dssp -CCEEEEEETTSSSC--CEEEC-EEECSSCCGGGCCEEEEEEEECTTC----CEEEEEEECSTTCCEEEEEEEETTTTEE
T ss_pred CCCeEEEEecCCCCC--ceEEE-EccCCCCCcCceeeeeeEEEECCCC----cEEEEEEECCCCCCeEEEEEEECCCCEE
Confidence 699999999874321 11222 2222 2346778887663 3 1234555444 34 888877654222
Q ss_pred --eeeeCCC-CCCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 270 --LWDIHPA-PKFIYGLDWLPDPGCVILSFD-----------------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 270 --~~~~~~h-~~~i~~l~~sp~~~~l~s~~~-----------------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+..+.+. -...+.+.+.++|++.++... .|.|+-||. ++. .
T Consensus 154 ~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~----------~~~---------~ 214 (355)
T 3sre_A 154 LHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP----------NDV---------R 214 (355)
T ss_dssp EEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT----------TCC---------E
T ss_pred EEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC----------CeE---------E
Confidence 2334332 234689999999997776541 133444443 111 2
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEe-CCCeEEEEEcC
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCS-ADGTVHRFQLT 365 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s-~Dg~v~iwd~~ 365 (568)
.+...-..-+.++|+|+++.|..+. ..+.|+.|++.
T Consensus 215 ~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 215 VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEEC
Confidence 2222234558999999997766655 57889999985
No 300
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.71 E-value=1.8 Score=42.66 Aligned_cols=217 Identities=14% Similarity=0.172 Sum_probs=103.1
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.+.++|.|++ .++ ++..+|.|++++ .+.. ..+.. + ++ ....... +
T Consensus 33 P~~ia~~pdG----------~l~-V~e~~g~I~~i~--~g~~-~~~~~-------------~-~v------~~~g~~~-p 77 (352)
T 2ism_A 33 PWALAFLPDG----------GML-IAERPGRIRLFR--EGRL-STYAE-------------L-SV------YHRGESG-L 77 (352)
T ss_dssp EEEEEECTTS----------CEE-EEETTTEEEEEE--TTEE-EEEEE-------------C-CC------CCSTTCS-E
T ss_pred ceEEEEcCCC----------eEE-EEeCCCeEEEEE--CCCc-cEeec-------------c-eE------eecCCCC-c
Confidence 3499999999 544 456679999998 3331 11100 0 00 0111222 3
Q ss_pred eEEEEccCCC---CCEEEEEeC-C-----CeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccCCCCCCCCcEE
Q 008363 183 LTMEWSTSPP---HDYLLAGCH-D-----GTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPAESDSDSANVI 250 (568)
Q Consensus 183 ~~v~~s~~~~---g~~l~sgs~-D-----g~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~~~~~~~~~~l 250 (568)
..|+|+ |+ +..|.++.. . +.|..|+............+..+. +.......|+|.|++ .++
T Consensus 78 ~gia~~--pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG------~Ly 149 (352)
T 2ism_A 78 LGLALH--PRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG------MLY 149 (352)
T ss_dssp EEEEEC--TTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS------CEE
T ss_pred eeEEEC--CCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC------CEE
Confidence 889988 66 344444433 2 567778776331100001122232 111234689999998 777
Q ss_pred EEEcCC-------------C-EEEEECCCC-------------CcceeeeCCCCCCeEEEEEcC-CCCEEEEEeCCCcE-
Q 008363 251 LTAGHG-------------G-LKFWDIRDP-------------FRPLWDIHPAPKFIYGLDWLP-DPGCVILSFDDGAM- 301 (568)
Q Consensus 251 as~s~d-------------~-v~lwD~~~~-------------~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~dg~I- 301 (568)
++.+.. + |.-+|.... ...+.. .++. ....++|+| ++..+++-...+.+
T Consensus 150 v~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a-~G~r-np~g~a~d~~~g~l~v~d~g~~~~~ 227 (352)
T 2ism_A 150 VTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYS-LGHR-NPQGLAWHPKTGELFSSEHGPSGEQ 227 (352)
T ss_dssp EECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEE-ECCS-EECCCEECTTTCCEEEEEECC----
T ss_pred EEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEE-EcCC-CcccEEEECCCCCEEEEEcCCCCCC
Confidence 775431 3 555555431 011111 1332 246789999 56655543333321
Q ss_pred -----EEEEccccc-cCCC-CCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 302 -----RIVSLLKAA-YDVP-ATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 302 -----~lwd~~~~~-~~~~-~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
.|.-+..-. +..| ..+.........++..+..| .....++| .+|.++++.-..+.|...++..
T Consensus 228 ~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 228 GYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAF-FRGDLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp --CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEE-ETTEEEEEETTTTEEEEEEEEE
T ss_pred CCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCC-CCCcceEE-ECCEEEEEECCCCEEEEEEECC
Confidence 222222111 0000 00000000001334454333 34577888 4566666665667777777753
No 301
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=95.66 E-value=1.2 Score=47.28 Aligned_cols=200 Identities=10% Similarity=0.046 Sum_probs=108.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
..|++++.++.|.-+|..+|+.+-.+......... . + +.. +...++.. +..+++++.|
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~----------~-~----~~~---~~~g~a~~----~~~v~~~t~d 126 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR----------P-C----CDV---VNRGAAIY----GDKVFFGTLD 126 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC----------C-S----SCS---CCCCCEEE----TTEEEEEETT
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc----------c-c----ccc---CCCccEEE----CCEEEEEeCC
Confidence 35666666455889999998877554222100000 0 0 000 00112222 4588888999
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCC----Cee-EEEEccCCCCCCCCc-EEEEEc------CCC-EEEEECCCCCcc
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTL----PIR-AVSWAPAESDSDSAN-VILTAG------HGG-LKFWDIRDPFRP 269 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~----~V~-~v~~~p~~~~~~~~~-~las~s------~d~-v~lwD~~~~~~~ 269 (568)
+.|..+|..++ +.+-.+..... .+. ......+. ...+ .++.++ .++ |+.+|..++ +.
T Consensus 127 g~l~AlD~~TG------~~~W~~~~~~~~~~~~~~~sP~v~~~~---~~G~~~v~vg~~~~e~~~~g~v~alD~~tG-~~ 196 (582)
T 1flg_A 127 ASVVALNKNTG------KVVWKKKFADHGAGYTMTGAPTIVKDG---KTGKVLLIHGSSGDEFGVVGRLFARDPDTG-EE 196 (582)
T ss_dssp TEEEEEESSSC------CEEEEEECSCGGGTCBCCSCCEEEECT---TTCCEEEEECCBCGGGCCBCEEEEECTTTC-CE
T ss_pred CEEEEEECCCC------CEEeeecCCCCCcCcccccCCEEeCCC---cCCcEEEEEeccccccCCCCEEEEEECCCC-CE
Confidence 99999999887 55544432210 011 11111110 0002 455544 256 999999887 55
Q ss_pred eeeeCCCCCC----------------------------------------e-EEEEEcCCCCEEEEEeC-----------
Q 008363 270 LWDIHPAPKF----------------------------------------I-YGLDWLPDPGCVILSFD----------- 297 (568)
Q Consensus 270 ~~~~~~h~~~----------------------------------------i-~~l~~sp~~~~l~s~~~----------- 297 (568)
++........ + ..++++|....++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 5443211000 0 23567777777777653
Q ss_pred ---------C----CcEEEEEccccccCCCCCCCCccCccccceEEEe--cC--------CCCEEEEEEe-cCC---CEE
Q 008363 298 ---------D----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CS--------SFAIWSVQVS-RLT---GMV 350 (568)
Q Consensus 298 ---------d----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h--------~~~V~~l~~s-p~~---~~l 350 (568)
| +.|..+|.. +|+.++ .++ .| ..++. +... .+| .+|
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~--------TG~~~W--------~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v 339 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPS--------SGEVKW--------FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKAT 339 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTT--------TCCEEE--------EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEE
T ss_pred cCCCcccccCCcccceEEEEeCC--------CCCEEE--------EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEE
Confidence 2 578888883 576653 332 12 12222 2222 456 378
Q ss_pred EEEeCCCeEEEEEcCCCeeec
Q 008363 351 AYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 351 ~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
+.++.+|.++++|..++++.-
T Consensus 340 ~~~~~~G~l~~lD~~tG~~lw 360 (582)
T 1flg_A 340 AHADRNGFFYVVDRSNGKLQN 360 (582)
T ss_dssp EEECTTSEEEEEETTTCCEEE
T ss_pred EEECCCceEEEEECCCCCEec
Confidence 889999999999999887653
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=95.62 E-value=0.96 Score=44.35 Aligned_cols=154 Identities=8% Similarity=0.126 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCC-CCCCcE-EEEEcC--CC-EEEEECCCCC
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESD-SDSANV-ILTAGH--GG-LKFWDIRDPF 267 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~-~~~~~~-las~s~--d~-v~lwD~~~~~ 267 (568)
..+++.....+-+.+||+. + +.++.+.. +.++.|..-|.-.- ...-.+ +++.-. +. |.+|++....
T Consensus 40 ~s~ii~t~k~~gL~Vydl~-G------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~ 110 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSLD-G------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN 110 (355)
T ss_dssp GCEEEEEETTTEEEEEETT-S------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT
T ss_pred ccEEEEEcCCCCEEEEcCC-C------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC
Confidence 3467767778899999994 4 66666643 66888887773200 000002 333333 34 9999774222
Q ss_pred cceeeeCC------CC-CCeEEEEE--cCC-CC-EEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCC
Q 008363 268 RPLWDIHP------AP-KFIYGLDW--LPD-PG-CVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSF 336 (568)
Q Consensus 268 ~~~~~~~~------h~-~~i~~l~~--sp~-~~-~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~ 336 (568)
..+..+.. .. ..++.+|+ +|. +. ++++...+|.+..|++.... .|..- .+.++++.. .+
T Consensus 111 ~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~-----~g~~~----~~lVR~f~l-gs 180 (355)
T 3amr_A 111 GTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADK-----NGYIS----GKKVRAFKM-NS 180 (355)
T ss_dssp CCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECT-----TSCEE----EEEEEEEEC-SS
T ss_pred CceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCC-----CCccc----ceEEEEecC-CC
Confidence 34544421 11 45677777 774 44 67778889999999995321 12111 133456654 35
Q ss_pred CEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 337 AIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 337 ~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
.+-.+.+.+....|+.+-.|..|..++.+
T Consensus 181 q~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 181 QTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred CcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 67888999888999999999777666654
No 303
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=95.47 E-value=2 Score=41.66 Aligned_cols=149 Identities=8% Similarity=0.018 Sum_probs=80.0
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE-
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL- 258 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v- 258 (568)
.+ .+|.+. + +..+++ +.+|.|.. ....+. ....+.....+...+..|.+.+++ .+++.+..+.|
T Consensus 81 ~~-~~i~~~--~-~~~~~~-g~~g~i~~-S~DgG~---tW~~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~g~v~ 145 (327)
T 2xbg_A 81 RF-NSVSFQ--G-NEGWIV-GEPPIMLH-TTDGGQ---SWSQIPLDPKLPGSPRLIKALGNG------SAEMITNVGAIY 145 (327)
T ss_dssp EE-EEEEEE--T-TEEEEE-EETTEEEE-ESSTTS---SCEECCCCTTCSSCEEEEEEEETT------EEEEEETTCCEE
T ss_pred cE-EEEEec--C-CeEEEE-ECCCeEEE-ECCCCC---CceECccccCCCCCeEEEEEECCC------CEEEEeCCccEE
Confidence 45 778876 4 344444 45665543 222221 111111111233457788887776 67777655444
Q ss_pred EEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEE-EEccccccCCCCCCCCccCccccceEEEecCCCC
Q 008363 259 KFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDGAMRI-VSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFA 337 (568)
Q Consensus 259 ~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~l-wd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~ 337 (568)
+-.|--..-..+ ..++...+..+.+.|++.+++++. +|.|+. +|- .|... +.+ -......
T Consensus 146 ~S~DgG~tW~~~--~~~~~~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~---------gG~tW-----~~~--~~~~~~~ 206 (327)
T 2xbg_A 146 RTKDSGKNWQAL--VQEAIGVMRNLNRSPSGEYVAVSS-RGSFYSTWEP---------GQTAW-----EPH--NRTTSRR 206 (327)
T ss_dssp EESSTTSSEEEE--ECSCCCCEEEEEECTTSCEEEEET-TSSEEEEECT---------TCSSC-----EEE--ECCSSSC
T ss_pred EEcCCCCCCEEe--ecCCCcceEEEEEcCCCcEEEEEC-CCcEEEEeCC---------CCCce-----eEC--CCCCCCc
Confidence 434422111222 234456789999999988776654 454433 332 12221 111 1234567
Q ss_pred EEEEEEecCCCEEEEEeCCCeEEEEE
Q 008363 338 IWSVQVSRLTGMVAYCSADGTVHRFQ 363 (568)
Q Consensus 338 V~~l~~sp~~~~l~s~s~Dg~v~iwd 363 (568)
+..+.+.+++.++ .++.+|.++++.
T Consensus 207 ~~~~~~~~~g~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 207 LHNMGFTPDGRLW-MIVNGGKIAFSD 231 (327)
T ss_dssp EEEEEECTTSCEE-EEETTTEEEEEE
T ss_pred cceeEECCCCCEE-EEeCCceEEEec
Confidence 8889999888655 455688887765
No 304
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.28 E-value=0.72 Score=47.70 Aligned_cols=168 Identities=10% Similarity=0.079 Sum_probs=87.8
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC---CCCCeeEEEE-------ccCCCCCCCCc-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA---DTLPIRAVSW-------APAESDSDSAN-VIL 251 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~---h~~~V~~v~~-------~p~~~~~~~~~-~la 251 (568)
..|+|.|...+.++++-...+.|++.|+... ........ .......|+| ++++ . +++
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G------~~lyv 209 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------MLSSPLNINTIPTNRIRSIAFNKKIEGYADEA------EYMIV 209 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTT------EEEEEECCTTSSCSBEEEEEECCCBTTTBCTT------CEEEE
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCC------EEEEEEccCccccCCCcEEEEeecccccCCCC------CEEEE
Confidence 6788883212344444444467888888755 22222222 1224899999 9998 5 555
Q ss_pred EEcCC------C-EEEEECCC--CCc--c-eeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccccccCCCCCCC
Q 008363 252 TAGHG------G-LKFWDIRD--PFR--P-LWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLKAAYDVPATGK 318 (568)
Q Consensus 252 s~s~d------~-v~lwD~~~--~~~--~-~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~~~~~~~~~g~ 318 (568)
+...+ . |.+++... ... . ...+... .....++++|++..|+.+ ..++.|+.+|+..... ...++.
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~-~~~tg~ 287 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFK-TIKNGG 287 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHH-HHHTTC
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccc-cccCce
Confidence 54433 2 66776443 111 0 0111111 123577889966556555 5578899999851000 000121
Q ss_pred C---ccCc---cccceEEEecCCCCEEEEEEecCCCEEEEE-eCCCeEEEEEcC
Q 008363 319 P---FAGT---KQQGLHLVNCSSFAIWSVQVSRLTGMVAYC-SADGTVHRFQLT 365 (568)
Q Consensus 319 ~---~~~~---~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~-s~Dg~v~iwd~~ 365 (568)
. .... ....+... +.....+.|+|+|++.+|..+ +....|+.+++.
T Consensus 288 ~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 288 SWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred eecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 1 0000 00111122 223345789999999854444 566788886653
No 305
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=95.17 E-value=0.064 Score=58.67 Aligned_cols=158 Identities=9% Similarity=-0.037 Sum_probs=88.4
Q ss_pred eEEEEccCCCCCEEEEE-eCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAG-CHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sg-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~l 260 (568)
..|+|. +.+..|+.+ ...+.|..+++...... ......+.........|++.+.+ .+++++-...+ |.+
T Consensus 409 ~gla~d--~~~~~Ly~sD~~~~~I~~~~~~g~~~~--~~~~~~i~~~~~~P~glavD~~~-----g~LY~tD~~~~~I~v 479 (699)
T 1n7d_A 409 VALDTE--VASNRIYWSDLSQRMICSTQLDRAHGV--SSYDTVISRDIQAPDGLAVDWIH-----SNIYWTDSVLGTVSV 479 (699)
T ss_dssp CCCEEE--TTTTEEEECCTTTTSBEEEESCCCCC---CCCCCBCCSCC--CCCEECCCSS-----SBCEECCTTTSCEEE
T ss_pred EEEccc--cccCeEEEEecCCCeEEEEecCCCCCC--cceEEEEeCCCCCcceEEEEeeC-----CcEEEEeccCCeEEE
Confidence 678887 544455444 45688999998741000 01111111112235668887554 15555555555 999
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEEe-cCCCC
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN-CSSFA 337 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~-~h~~~ 337 (568)
+++... .....+.........|+++|.+.+|+.+.. .+.|..+++. |... ..+. ..-..
T Consensus 480 ~d~dg~-~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~d---------G~~~--------~~l~~~~l~~ 541 (699)
T 1n7d_A 480 ADTKGV-KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN---------GVDI--------YSLVTENIQW 541 (699)
T ss_dssp EBSSSC-CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSS---------SCCC--------CEESCSSCSS
T ss_pred EecCCC-ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCC---------CCCe--------eEEEeCCCCC
Confidence 998755 222222222234578899997666666543 3678777762 3221 1221 11234
Q ss_pred EEEEEEecCCC-EEEEEeCCCeEEEEEcCCC
Q 008363 338 IWSVQVSRLTG-MVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 338 V~~l~~sp~~~-~l~s~s~Dg~v~iwd~~~~ 367 (568)
...|+|+|++. ++++-+..+.|.++++...
T Consensus 542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred ccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 56799999864 4455556678999998643
No 306
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.95 E-value=0.86 Score=52.76 Aligned_cols=197 Identities=14% Similarity=0.202 Sum_probs=114.4
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccceEEEEccCCCCCEEEEEeCC
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIPLTMEWSTSPPHDYLLAGCHD 202 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~~~v~~s~~~~g~~l~sgs~D 202 (568)
++||.=. ..++.|+|+.+.+.++.. .....| .--.|- .+ +.|+..+ +
T Consensus 78 ~iiALra-g~~lQiFnl~~k~klks~---------------------------~~~e~V-vfWkWi--s~-~~l~lVT-~ 124 (1630)
T 1xi4_A 78 KVIALKA-GKTLQIFNIEMKSKMKAH---------------------------TMTDDV-TFWKWI--SL-NTVALVT-D 124 (1630)
T ss_pred ceEEEec-CCeEEEeehHHhhhhccc---------------------------ccCCCc-eEEEec--CC-CeeEEEc-C
Confidence 5666654 678999999986666442 122345 555665 33 4555554 5
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCC----CCCeeEEEEccCCCCCCCCcEEEEEcC-------CC-EEEEECCCCCcce
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSAD----TLPIRAVSWAPAESDSDSANVILTAGH-------GG-LKFWDIRDPFRPL 270 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h----~~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v~lwD~~~~~~~~ 270 (568)
..|.-|++... ..|+..|..| ...|..-..+++. ++++..|- .| +.+|.+.... -
T Consensus 125 ~aVyHW~~~~~-----s~P~k~fdR~~~L~~~QIinY~~d~~~------kW~~l~gi~~~~~~v~G~mQLyS~er~~--s 191 (1630)
T 1xi4_A 125 NAVYHWSMEGE-----SQPVKMFDRHSSLAGCQIINYRTDAKQ------KWLLLTGISAQQNRVVGAMQLYSVDRKV--S 191 (1630)
T ss_pred CeEEEeccCCC-----CccHHHHhcchhcccCeeEEeeeCCCC------CeEEEEeeccCCCcccceeeeeeccccc--c
Confidence 68999999642 3566666655 4456666777777 67664432 36 8888887542 2
Q ss_pred eeeCCCCCCeEEEEEc--CCCCEEEE-Ee---CCCcEEEEEccccccCCCCCCCCccCccccceEEEe---cCCCCEEEE
Q 008363 271 WDIHPAPKFIYGLDWL--PDPGCVIL-SF---DDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN---CSSFAIWSV 341 (568)
Q Consensus 271 ~~~~~h~~~i~~l~~s--p~~~~l~s-~~---~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~---~h~~~V~~l 341 (568)
..+.||.+....+... +....|++ +. ..+.++|-++.... .|.+-. ....+..+. ....-..++
T Consensus 192 Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~-----~~~~~f--~kk~~~~~~~~~~~~Dfpv~~ 264 (1630)
T 1xi4_A 192 QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP-----TGNQPF--PKKAVDVFFPPEAQNDFPVAM 264 (1630)
T ss_pred hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc-----cCCCCC--ccccccccCCcccccCcceEE
Confidence 3345554433333221 11222322 21 13789999985431 111100 001111111 112333578
Q ss_pred EEecCCCEEEEEeCCCeEEEEEcCCCeeecc
Q 008363 342 QVSRLTGMVAYCSADGTVHRFQLTAKAVEKD 372 (568)
Q Consensus 342 ~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~~ 372 (568)
..++...++...+.-|.|.++|+.++.....
T Consensus 265 ~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 265 QISEKHDVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EeccccCEEEEEecCceEEEEecccchhhhh
Confidence 8898888999999999999999999876543
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.64 E-value=5.7 Score=42.48 Aligned_cols=155 Identities=5% Similarity=-0.063 Sum_probs=97.6
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCC-EEEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGG-LKFW 261 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~-v~lw 261 (568)
..|+|.+. ++.++++-..++.|..+++... .....+.........|++.+.+ .+++++-...+ |.+.
T Consensus 40 ~~l~~d~~-~~~lywtD~~~~~I~r~~~~g~------~~~~v~~~g~~~P~GlAvD~~~-----~~LY~tD~~~~~I~v~ 107 (628)
T 4a0p_A 40 SALDFDVT-DNRIYWTDISLKTISRAFMNGS------ALEHVVEFGLDYPEGMAVDWLG-----KNLYWADTGTNRIEVS 107 (628)
T ss_dssp EEEEEETT-TTEEEEEETTTTEEEEEETTSC------SCEEEECSSCSCCCEEEEETTT-----TEEEEEETTTTEEEEE
T ss_pred EEEEEECC-CCEEEEEECCCCeEEEEECCCC------CcEEEEeCCCCCcceEEEEeCC-----CEEEEEECCCCEEEEE
Confidence 78998832 3445556667889999988754 2223333223457789998765 15666666566 9999
Q ss_pred ECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC--CCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEE
Q 008363 262 DIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD--DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIW 339 (568)
Q Consensus 262 D~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~--dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~ 339 (568)
++......+ .+...-.....|++.|...+|+.+.. .+.|...++. |... ..+...-....
T Consensus 108 ~~dG~~~~~-l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~d---------G~~~--------~~l~~~~~~P~ 169 (628)
T 4a0p_A 108 KLDGQHRQV-LVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMD---------GSER--------TTLVPNVGRAN 169 (628)
T ss_dssp ETTSTTCEE-EECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETT---------SCSC--------EEEECSCSSEE
T ss_pred ecCCCcEEE-EEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCC---------CCce--------EEEECCCCCcc
Confidence 997653222 22233345689999997666776643 5677777762 3322 22222345668
Q ss_pred EEEEecCCCEEEEEe-CCCeEEEEEcCCC
Q 008363 340 SVQVSRLTGMVAYCS-ADGTVHRFQLTAK 367 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s-~Dg~v~iwd~~~~ 367 (568)
.|++++++..|..+. ..+.|..+++...
T Consensus 170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 170 GLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 899999866665554 5678888888654
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.54 E-value=2.6 Score=40.03 Aligned_cols=151 Identities=10% Similarity=0.012 Sum_probs=76.8
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCC---CCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-
Q 008363 192 PHDYLLAGCHD-----GTVALWKFVASD---SSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G- 257 (568)
Q Consensus 192 ~g~~l~sgs~D-----g~I~iwd~~~~~---~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~- 257 (568)
++.+++.|+.+ ..+.+||+.+.. + ..+..+.........+.+ ++ .+++.|+.+ .
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~lyv~GG~~~~~~~~~ 129 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVW----YSVAPMNVRRGLAGATTL--GD------MIYVSGGFDGSRRHTS 129 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCC----EEECCCSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCee----EECCCCCCCccceeEEEE--CC------EEEEEcccCCCcccce
Confidence 45677888765 358899988764 3 222222111111222222 44 677777642 3
Q ss_pred EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEE
Q 008363 258 LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLV 331 (568)
Q Consensus 258 v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~ 331 (568)
+.+||+.+.. ..+..+.........+.+ +++.++.|+.+ ..+.+||+.. .+. ..+..+
T Consensus 130 ~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~--------~~W------~~~~~~ 193 (301)
T 2vpj_A 130 MERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHT--------GHW------TNVTPM 193 (301)
T ss_dssp EEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT--------TEE------EEECCC
T ss_pred EEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCC--------CcE------EeCCCC
Confidence 8889987653 122222211111122222 56777777654 4588888743 111 111111
Q ss_pred ecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 332 NCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 332 ~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
.........+.+ ++.+++.|+.+ ..+.+||+.+..+...
T Consensus 194 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 237 (301)
T 2vpj_A 194 ATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV 237 (301)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC
Confidence 111111122222 56777777764 4689999988877654
No 309
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=94.44 E-value=2.6 Score=39.97 Aligned_cols=151 Identities=7% Similarity=-0.036 Sum_probs=76.1
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363 192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF 260 (568)
Q Consensus 192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l 260 (568)
++.+++.|+.++ .+.+||+.+..+ ..+..+.........+.+ ++ .+++.|+.+ . +.+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQW----SMLGDMQTAREGAGLVVA--SG------VIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEE----EEEEECSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCCEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeE----EECCCCCCCcccceEEEE--CC------EEEEECCCCCCcccceEEE
Confidence 466777776543 588888876633 333332211111222222 44 677777643 3 889
Q ss_pred EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
||+.+..- .+..+.........+.+ ++..++.|+.+ ..|.+||+.. .+. ..+..+...
T Consensus 180 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--------~~W------~~~~~~p~~ 243 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT--------DSW------TTVTSMTTP 243 (301)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--------TEE------EEECCCSSC
T ss_pred EeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC--------CcE------EECCCCCCc
Confidence 99876531 11111111111122333 46667777653 4688999853 111 111111111
Q ss_pred CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
......+.+ ++.+++.|+.+ ..|.+||+.+..+...
T Consensus 244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 284 (301)
T 2vpj_A 244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV 284 (301)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence 111122222 56777777765 4678899887766543
No 310
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.28 E-value=0.89 Score=44.92 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=57.5
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCcee-EEeeCCCCCeeEEEEccC----CCCCCCCcEEEEEcC-
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPL-LCFSADTLPIRAVSWAPA----ESDSDSANVILTAGH- 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~-~~~~~h~~~V~~v~~~p~----~~~~~~~~~las~s~- 255 (568)
|..|+|. |+|+.|+++...|.|++++...... ....-+ ..+.........|+|+|+ + .++++-..
T Consensus 20 P~~i~~~--pdG~~l~V~e~~G~i~~~~~~g~~~-~~~~~~~~v~~~g~~g~~gia~~pdf~~~g------~lYv~~~~~ 90 (353)
T 2g8s_A 20 PWALAFL--PDNHGMLITLRGGELRHWQAGKGLS-APLSGVPDVWAHGQGGLLDVVLAPDFAQSR------RIWLSYSEV 90 (353)
T ss_dssp EEEEEEC--STTCCEEEEETTTEEEEEETTTEEC-CCCBSCCCCCCSTTCSEEEEEECTTHHHHC------EEEEEEEEE
T ss_pred cEEEEEc--CCCCEEEEEeCCceEEEEeCCCcee-eEecCCcccccCCCCCceeEEECCCCCCCC------EEEEEEeCC
Confidence 5899988 8887355566789999998532100 000000 111122445789999995 4 55555432
Q ss_pred ------CC-EEEEECCCCC------ccee-eeCC---CCCCeEEEEEcCCCCEEEEEeC
Q 008363 256 ------GG-LKFWDIRDPF------RPLW-DIHP---APKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 256 ------d~-v~lwD~~~~~------~~~~-~~~~---h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
.. |..|++.... +.+. .+.. .......|+|.|||.++++.+.
T Consensus 91 ~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 91 GDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp CSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 23 6666665321 1111 1110 1112357999999965555443
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.23 E-value=1.6 Score=44.77 Aligned_cols=108 Identities=10% Similarity=0.128 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeC------CCCCeeEEEEccCCCCCCCCcEEEEEcC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSA------DTLPIRAVSWAPAESDSDSANVILTAGH 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~~~~~~las~s~ 255 (568)
|+.|+|. |+|+++++--..+.|.+++...+. ...+..+.. ....+..|+|+|+- ..+..++++-+.
T Consensus 29 P~~~a~~--pdG~l~V~e~~gg~I~~~~~~~g~----~~~~~~~~~~~~~~~g~~Gllgia~~Pdf--~~~g~lYv~~s~ 100 (454)
T 1cru_A 29 PHALLWG--PDNQIWLTERATGKILRVNPESGS----VKTVFQVPEIVNDADGQNGLLGFAFHPDF--KNNPYIYISGTF 100 (454)
T ss_dssp EEEEEEC--TTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCCTTSSCSEEEEEECTTT--TTSCEEEEEEEE
T ss_pred ceEEEEc--CCCcEEEEEcCCCEEEEEECCCCc----EeEEecCCccccccCCCCceeEEEECCCc--CcCCEEEEEEec
Confidence 4899988 888766665443578888754331 122333321 24567799999951 001155555432
Q ss_pred ------------CC-EEEEECCCCC------ccee-eeC-CCCCCeEEEEEcCCCCEEEEEeC
Q 008363 256 ------------GG-LKFWDIRDPF------RPLW-DIH-PAPKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 256 ------------d~-v~lwD~~~~~------~~~~-~~~-~h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
.. |.-|++.... +.+. .+. ........|+|.|||.+.++.+.
T Consensus 101 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 101 KNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp ECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 23 6666554321 1121 122 11234689999999987776554
No 312
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.19 E-value=3.5 Score=39.10 Aligned_cols=151 Identities=8% Similarity=-0.049 Sum_probs=74.6
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-------CC-E
Q 008363 192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-------GG-L 258 (568)
Q Consensus 192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-------d~-v 258 (568)
++.+++.|+.++ .+.+||+.+..+ ..+..+...... .+++.. ++ .+++.|+. -. +
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~~-~~------~iyv~GG~~~~~~~~~~~~ 175 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEW----FHVAPMNTRRSS-VGVGVV-GG------LLYAVGGYDVASRQCLSTV 175 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEE----EEECCCSSCCBS-CEEEEE-TT------EEEEECCEETTTTEECCCE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeE----eecCCCCCcccC-ceEEEE-CC------EEEEEeCCCCCCCccccEE
Confidence 467778887654 477888776532 222112111111 122222 34 56666653 13 8
Q ss_pred EEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 259 KFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 259 ~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
.+||+.+.. ..+..+.........+.+ ++..++.|+.+ ..+.+||+.. .+. ..+..+.
T Consensus 176 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~--------~~W------~~~~~~~ 239 (302)
T 2xn4_A 176 ECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTT--------NAW------RQVADMN 239 (302)
T ss_dssp EEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTT--------TEE------EEECCCS
T ss_pred EEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCC--------CCE------eeCCCCC
Confidence 899988653 111112111111122222 56777777654 3688898843 111 1111111
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADG-----TVHRFQLTAKAVEKD 372 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~ 372 (568)
........+. -++.+++.|+.++ .+.+||+.+..+...
T Consensus 240 ~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 282 (302)
T 2xn4_A 240 MCRRNAGVCA--VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282 (302)
T ss_dssp SCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CccccCeEEE--ECCEEEEECCcCCCcccccEEEEcCCCCeEEEC
Confidence 1111111222 2567777777654 489999988877654
No 313
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.84 E-value=3.2 Score=39.49 Aligned_cols=150 Identities=6% Similarity=-0.042 Sum_probs=74.3
Q ss_pred CCCEEEEEeCC------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC----------
Q 008363 192 PHDYLLAGCHD------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---------- 255 (568)
Q Consensus 192 ~g~~l~sgs~D------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---------- 255 (568)
++.+++.|+.+ ..+.+||+.+..+ ..+..+....... +++.. ++ .+++.|+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~-~~~~~-~~------~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESW----HTKPSMLTQRCSH-GMVEA-NG------LIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEE----EEECCCSSCCBSC-EEEEE-TT------EEEEECCEESCTTTCEEC
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCce----EeCCCCcCCccee-EEEEE-CC------EEEEECCCCCCCCccccc
Confidence 46677888765 4588889876632 2221111111111 22222 44 56666653
Q ss_pred CCEEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceE
Q 008363 256 GGLKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLH 329 (568)
Q Consensus 256 d~v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~ 329 (568)
+.+.+||+.+..- .+..+.........+.+ +++.++.|+.+ ..|.+||+.. .+. ..+.
T Consensus 169 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~--------~~W------~~~~ 232 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL--------NEW------KMVS 232 (306)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT--------TEE------EECC
T ss_pred ceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC--------CcE------EECC
Confidence 2288999887531 11111111111122222 56667776643 4588888843 111 1111
Q ss_pred EEecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeec
Q 008363 330 LVNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEK 371 (568)
Q Consensus 330 ~~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~ 371 (568)
.+.........+.+ ++.+++.|+.+ ..+.+||+.+..+..
T Consensus 233 ~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~ 277 (306)
T 3ii7_A 233 PMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277 (306)
T ss_dssp CCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred CCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence 11111112222233 56778888754 568889988776654
No 314
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.82 E-value=2.4 Score=40.27 Aligned_cols=151 Identities=9% Similarity=-0.034 Sum_probs=73.7
Q ss_pred CCCEEEEEeCCC-----eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363 192 PHDYLLAGCHDG-----TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF 260 (568)
Q Consensus 192 ~g~~l~sgs~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l 260 (568)
++.+++.|+.++ .+.+||..+..+ ..+..+.........+.+ ++ .+++.|+.+ . +.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~ 128 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQW----TSVANMRDRRSTLGAAVL--NG------LLYAVGGFDGSTGLSSVEA 128 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEE----EEECCCSSCCBSCEEEEE--TT------EEEEEEEECSSCEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCce----eeCCCCCccccceEEEEE--CC------EEEEEcCCCCCccCceEEE
Confidence 456777777553 578888876632 222222111111222222 34 577777643 2 778
Q ss_pred EECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-------CcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 261 WDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 261 wD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
||+.+.. ..+..+.........+.+ ++..++.|+.+ ..+.+||+.. .+. ..+..+.
T Consensus 129 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~--------~~W------~~~~~~p 192 (302)
T 2xn4_A 129 YNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATT--------NEW------TYIAEMS 192 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTT--------TEE------EEECCCS
T ss_pred EeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCC--------CcE------EECCCCc
Confidence 8887653 111111111111122222 46666666542 3588888843 111 1111111
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
........+.+ ++.+++.|+.+ ..+.+||+.+..+...
T Consensus 193 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 235 (302)
T 2xn4_A 193 TRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV 235 (302)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE
T ss_pred cccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC
Confidence 11111122222 56777777765 3689999988877654
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.81 E-value=2.2 Score=41.85 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=60.9
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe----eCCCCCeeEEEEccCCCCCCCCcEEEEEc--C
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF----SADTLPIRAVSWAPAESDSDSANVILTAG--H 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~----~~h~~~V~~v~~~p~~~~~~~~~~las~s--~ 255 (568)
|+.|+|. |+|.++++--..|.|++++...+. ...+..+ .........|+|+|+- ..+..++++-+ .
T Consensus 34 P~~ia~~--pdG~llVter~~G~I~~v~~~~g~----~~~v~~~~~v~~~g~~GllGia~~Pdf--~~~g~lYv~yt~~~ 105 (347)
T 3das_A 34 PWGLAPL--PGGDLLVSSRDEATITRVDAKTGR----KTELGEVPGVSPSGEGGLLGIALSPDY--ASDHMVYAYFTSAS 105 (347)
T ss_dssp EEEEEEC--TTSCEEEEETTTCEEEEECTTTCC----EEEEEECTTCCCBTTBSEEEEEECTTH--HHHCEEEEEEECSS
T ss_pred ceEEEEc--CCCcEEEEEecCCEEEEEECCCCc----EeeecccCceeecCCCCceeeEecccc--ccCCEEEEEEecCC
Confidence 5899998 888766666558999998765441 1222222 2235568999999951 00014555432 2
Q ss_pred CC-EEEEECCCC---------Cccee-eeC-CCCCCeEEEEEcCCCCEEEEEeC
Q 008363 256 GG-LKFWDIRDP---------FRPLW-DIH-PAPKFIYGLDWLPDPGCVILSFD 297 (568)
Q Consensus 256 d~-v~lwD~~~~---------~~~~~-~~~-~h~~~i~~l~~sp~~~~l~s~~~ 297 (568)
+. |.-|.+... ...+. .+. ........|.|.|||.+.++.+.
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 33 666665541 11121 121 11122467999999987776553
No 316
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=93.72 E-value=1.5 Score=43.11 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=59.3
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee---CCCCCeeEEEEccC---CCCCCCCcEEEEEcC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---ADTLPIRAVSWAPA---ESDSDSANVILTAGH 255 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---~h~~~V~~v~~~p~---~~~~~~~~~las~s~ 255 (568)
|..++|. |+|++ +++..+|.|.+++ .+. ...+..+. ........|+|+|+ + ..++++-..
T Consensus 33 P~~ia~~--pdG~l-~V~e~~g~I~~i~--~g~----~~~~~~~~v~~~g~~~p~gia~~pdf~~~-----g~lYv~~~~ 98 (352)
T 2ism_A 33 PWALAFL--PDGGM-LIAERPGRIRLFR--EGR----LSTYAELSVYHRGESGLLGLALHPRFPQE-----PYVYAYRTV 98 (352)
T ss_dssp EEEEEEC--TTSCE-EEEETTTEEEEEE--TTE----EEEEEECCCCCSTTCSEEEEEECTTTTTS-----CEEEEEEEE
T ss_pred ceEEEEc--CCCeE-EEEeCCCeEEEEE--CCC----ccEeecceEeecCCCCceeEEECCCCCCC-----CEEEEEEec
Confidence 4889988 88874 4556679999998 331 12222221 22456899999998 3 145555443
Q ss_pred C-----C-EEEEECCCCC----ccee-eeC---CCCCCeEEEEEcCCCCEEEEEe
Q 008363 256 G-----G-LKFWDIRDPF----RPLW-DIH---PAPKFIYGLDWLPDPGCVILSF 296 (568)
Q Consensus 256 d-----~-v~lwD~~~~~----~~~~-~~~---~h~~~i~~l~~sp~~~~l~s~~ 296 (568)
. . |..|+..... +.+. .+. ........|+|.|||...++.+
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 99 AEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp CTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 2 4 8888876431 1221 132 1112236899999997555544
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.54 E-value=5.2 Score=37.97 Aligned_cols=151 Identities=8% Similarity=-0.060 Sum_probs=74.9
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC------C-EEE
Q 008363 192 PHDYLLAGCHD----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG------G-LKF 260 (568)
Q Consensus 192 ~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d------~-v~l 260 (568)
++.+++.|+.+ ..+.+||+.+..+ ..+..+.........+.+ ++ .+++.|+.+ . +.+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~~ 122 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSW----YSKLGPPTPRDSLAACAA--EG------KIYTSGGSEVGNSALYLFEC 122 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEE----EEEECCSSCCBSCEEEEE--TT------EEEEECCBBTTBSCCCCEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeE----EECCCCCccccceeEEEE--CC------EEEEECCCCCCCcEeeeEEE
Confidence 45677888755 5688888876633 222222111111222222 44 677777653 3 889
Q ss_pred EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeC---------CCcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFD---------DGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~---------dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
||+.+..- .+..+.........+.+ ++..++.|+. -..+.+||+.. .+. ..+..
T Consensus 123 ~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~--------~~W------~~~~~ 186 (306)
T 3ii7_A 123 YDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT--------ETW------TELCP 186 (306)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT--------TEE------EEECC
T ss_pred EeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC--------CeE------EECCC
Confidence 99886531 11111111111122222 5666666653 24588888843 111 11111
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
+......-..+.+ ++.+++.|+.+ ..+.+||+.+..+...
T Consensus 187 ~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~ 231 (306)
T 3ii7_A 187 MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV 231 (306)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEEC
T ss_pred ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC
Confidence 1111111112222 56677777654 4688999988877655
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=93.53 E-value=8.4 Score=44.40 Aligned_cols=160 Identities=14% Similarity=0.083 Sum_probs=85.7
Q ss_pred cCccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeE-EeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 178 TQSIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLL-CFSADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 178 ~~~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~-~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
.+.+ ++|+-- +| +|++|- ..+|++|++... +.++ ....+ ..|..+.....+ ++++.|..-
T Consensus 885 ~g~v-~al~~~---~g-~Lla~i-g~~l~vy~l~~~------~~L~~~~~~~-~~i~~~~l~~~~------~~I~vgD~~ 945 (1158)
T 3ei3_A 885 KGAV-YSMVEF---NG-KLLASI-NSTVRLYEWTTE------KELRTECNHY-NNIMALYLKTKG------DFILVGDLM 945 (1158)
T ss_dssp SSCE-EEEEEE---TT-EEEEEE-TTEEEEEEECTT------SCEEEEEEEC-CCSCEEEEEEET------TEEEEEESS
T ss_pred CCcC-EEEeee---CC-EEEEEc-CCEEEEEECCCC------ceEEEEeecc-ccEEEEEEeccC------CEEEEEEhh
Confidence 4555 887733 35 566555 478999999755 2222 11111 123333333334 577777665
Q ss_pred -CEEEEECCCCCcceeee--CCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec
Q 008363 257 -GLKFWDIRDPFRPLWDI--HPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC 333 (568)
Q Consensus 257 -~v~lwD~~~~~~~~~~~--~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 333 (568)
+|.++..+.....+..+ ..+...++++.|..++ .++.+..+|.|.++.......+. ..++. ......|.
T Consensus 946 ~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~~~~~~-~~~~~-----L~~~~~fh- 1017 (1158)
T 3ei3_A 946 RSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDSAATTD-EERQH-----LQEVGLFH- 1017 (1158)
T ss_dssp BCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECTTCCST-TGGGB-----EEEEEEEE-
T ss_pred heEEEEEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCCCCCCc-cccce-----eeeEEEEe-
Confidence 46665443222233222 3456778999998654 67778889999998875421100 01111 12222332
Q ss_pred CCCCEEEEEE---ecC---------CCEEEEEeCCCeEEEEEc
Q 008363 334 SSFAIWSVQV---SRL---------TGMVAYCSADGTVHRFQL 364 (568)
Q Consensus 334 h~~~V~~l~~---sp~---------~~~l~s~s~Dg~v~iwd~ 364 (568)
....|+++.- .+. ...++.++.+|.|-+.-.
T Consensus 1018 lG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 1018 LGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp CSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 2345666652 222 234777888888877643
No 319
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.51 E-value=3.2 Score=39.67 Aligned_cols=151 Identities=8% Similarity=-0.057 Sum_probs=74.8
Q ss_pred CCCEEEEEeC----C-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C
Q 008363 192 PHDYLLAGCH----D-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G 257 (568)
Q Consensus 192 ~g~~l~sgs~----D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~ 257 (568)
++.+++.|+. + ..+.+||+.+..+ ..+..+.........+.+ ++ .+++.|+.+ .
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~ 137 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW----SPCAPMSVPRNRIGVGVI--DG------HIYAVGGSHGCIHHN 137 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEE----EECCCCSSCCBTCEEEEE--TT------EEEEECCEETTEECC
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeE----eECCCCCcCccccEEEEE--CC------EEEEEcCCCCCcccc
Confidence 4567777765 2 3578888876532 222111111111222222 44 577776532 3
Q ss_pred -EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 258 -LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 258 -v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+.+||+.+.. ..+..+.........+.+ ++..++.|+.+ ..+.+||+.... . ..+..
T Consensus 138 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~--------W------~~~~~ 201 (308)
T 1zgk_A 138 SVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNE--------W------RMITA 201 (308)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE--------E------EECCC
T ss_pred cEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCe--------E------eeCCC
Confidence 8889987653 111111111111122333 56666777654 458888874311 1 00011
Q ss_pred EecCCCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 331 VNCSSFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 331 ~~~h~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
+.........+.+ ++.+++.|+.+ ..+.+||+.+..+...
T Consensus 202 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 202 MNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 1111111122222 56777777765 5699999988877764
No 320
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.99 E-value=11 Score=40.16 Aligned_cols=109 Identities=11% Similarity=0.127 Sum_probs=68.2
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-CC-EEE
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-GG-LKF 260 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d~-v~l 260 (568)
.+++|. .++++++-+..+.|.+.++... .....+...-....+|++.|.. ..++.+-.. .. |..
T Consensus 397 lAvD~~---~~~lY~tD~~~~~I~v~~~~G~------~~~~l~~~~l~~P~~iavdp~~-----G~ly~tD~g~~~~I~r 462 (619)
T 3s94_A 397 IAVDWV---ARNLYWTDTGTDRIEVTRLNGT------MRKILISEDLEEPRAIVLDPMV-----GYMYWTDWGEIPKIER 462 (619)
T ss_dssp EEEETT---TTEEEEEETTTTEEEEEETTSC------SCEEEECTTCCSEEEEEEETTT-----TEEEEEECSSSCEEEE
T ss_pred eEEecc---cCcEEEEeCCCCcEEEEeCCCC------eEEEEEECCCCCeeeEEEEcCC-----CcEEEecCCCCCEEEE
Confidence 455654 4456666667789999998754 1112222334568999999973 155555433 24 777
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEe-CCCcEEEEEc
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSF-DDGAMRIVSL 306 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~-~dg~I~lwd~ 306 (568)
.++..... .......-...+.|+++++...|+.+. ..+.|..+++
T Consensus 463 ~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~ 508 (619)
T 3s94_A 463 AALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNT 508 (619)
T ss_dssp EETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEES
T ss_pred EccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEec
Confidence 77764422 222233345578999999877777774 4678888887
No 321
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.91 E-value=6.1 Score=45.56 Aligned_cols=143 Identities=7% Similarity=0.086 Sum_probs=86.1
Q ss_pred CCEEEEEe----------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEE
Q 008363 193 HDYLLAGC----------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWD 262 (568)
Q Consensus 193 g~~l~sgs----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD 262 (568)
..+|++|+ ..|.|.++++... ..+.+... ...++|++|+-- .| +|+.|-...|++||
T Consensus 844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~----kL~lv~~~-~v~g~v~al~~~-~g-------~Lla~ig~~l~vy~ 910 (1158)
T 3ei3_A 844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDG----KLQTVAEK-EVKGAVYSMVEF-NG-------KLLASINSTVRLYE 910 (1158)
T ss_dssp CCEEEEEEEECCTTCSSCCCEEEEEEEEETT----EEEEEEEE-EESSCEEEEEEE-TT-------EEEEEETTEEEEEE
T ss_pred CEEEEEEeeecCCCCCCCCceEEEEEEEECC----EEEEEEEE-EcCCcCEEEeee-CC-------EEEEEcCCEEEEEE
Confidence 36888887 3588999999743 12333332 236788888633 33 44444444599999
Q ss_pred CCCCCccee-eeCCCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEE
Q 008363 263 IRDPFRPLW-DIHPAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIW 339 (568)
Q Consensus 263 ~~~~~~~~~-~~~~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~ 339 (568)
+... ..+. ....+.. |..+...-.+.+|++|..-..|.++..+... + .+..+. .+...++
T Consensus 911 l~~~-~~L~~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~------~---------~L~~~a~D~~~~~vt 973 (1158)
T 3ei3_A 911 WTTE-KELRTECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPME------G---------NFEEIARDFNPNWMS 973 (1158)
T ss_dssp ECTT-SCEEEEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTT------T---------EEEEEEECCSCBCEE
T ss_pred CCCC-ceEEEEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCC------C---------eEEEEEeecccccEE
Confidence 9865 2222 1111111 2222232347889999887778777654311 2 122333 3445678
Q ss_pred EEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 340 SVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 340 ~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
++.|-.+ ..++.+..+|.|.++....
T Consensus 974 a~~~ld~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 974 AVEILDD-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp EEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred EEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence 8888655 4677899999999998865
No 322
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=92.68 E-value=8.2 Score=37.86 Aligned_cols=218 Identities=16% Similarity=0.172 Sum_probs=105.0
Q ss_pred eeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCccc
Q 008363 103 AWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSIP 182 (568)
Q Consensus 103 v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V~ 182 (568)
.+.|+|.|++ . |+++..+|.|++++ .++. ..+..- ++ ........
T Consensus 31 P~~ia~~pdG----------~-l~V~e~~g~I~~~d-~~G~--~~~~~~--------------~v------~~~g~~g~- 75 (354)
T 3a9g_A 31 PWSIAPLGGG----------R-YLVTERPGRLVLIS-PSGK--KLVASF--------------DV------ANVGEAGL- 75 (354)
T ss_dssp EEEEEEEETT----------E-EEEEETTTEEEEEC-SSCE--EEEEEC--------------CC------CCSTTCSE-
T ss_pred CeEEEEcCCC----------e-EEEEeCCCEEEEEe-CCCc--eEeecc--------------ce------eecCCCce-
Confidence 4599999998 5 55566679999987 3443 222100 00 01111223
Q ss_pred eEEEEccCCC---CCEEEEEeC----C----CeEEEEEccCCCCCC-CCcee-EEeeC-CCCCeeEEEEccCCCCCCCCc
Q 008363 183 LTMEWSTSPP---HDYLLAGCH----D----GTVALWKFVASDSSI-DSRPL-LCFSA-DTLPIRAVSWAPAESDSDSAN 248 (568)
Q Consensus 183 ~~v~~s~~~~---g~~l~sgs~----D----g~I~iwd~~~~~~~~-~~~~~-~~~~~-h~~~V~~v~~~p~~~~~~~~~ 248 (568)
..|+++ |+ +..|.++.. + ..|..|+........ ..+.+ ..+.. .......|+|.|++ .
T Consensus 76 ~gia~~--pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG------~ 147 (354)
T 3a9g_A 76 LGLALH--PEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG------M 147 (354)
T ss_dssp EEEEEC--TTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS------C
T ss_pred eeEEeC--CCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC------c
Confidence 788988 65 334444433 3 567777765431000 01111 22221 11224679999999 7
Q ss_pred EEEEEcCC-------------C-EEEEECCCC--------CcceeeeCCCCCCeEEEEEcC-CCCEEEEEeC-CC--cEE
Q 008363 249 VILTAGHG-------------G-LKFWDIRDP--------FRPLWDIHPAPKFIYGLDWLP-DPGCVILSFD-DG--AMR 302 (568)
Q Consensus 249 ~las~s~d-------------~-v~lwD~~~~--------~~~~~~~~~h~~~i~~l~~sp-~~~~l~s~~~-dg--~I~ 302 (568)
++++.+.. + |.-+|.... ...+.. .++.. ...|+|+| +++.+++-.. ++ .|.
T Consensus 148 Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~~g~l~v~d~g~~~~dei~ 225 (354)
T 3a9g_A 148 LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWS-YGHRN-PQGIDWHRASGVMVATEHGPVGHDEVN 225 (354)
T ss_dssp EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEE-ECCSC-CCEEEECTTTCCEEEEECCSSSCCEEE
T ss_pred EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEE-EccCC-cceEEEeCCCCCEEEEecCCCCCcEEE
Confidence 77775431 3 444454321 011222 23332 46899999 5664444322 22 233
Q ss_pred EEEccccccCCCC-CCCCccCccccceEEEecCCCCEEEEEEe-------cCCCEEEEEeCCCeEEEEEcCC
Q 008363 303 IVSLLKAAYDVPA-TGKPFAGTKQQGLHLVNCSSFAIWSVQVS-------RLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 303 lwd~~~~~~~~~~-~g~~~~~~~~~~l~~~~~h~~~V~~l~~s-------p~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+...-. .+..|. .+.........++..+.........++|. .++.++++.-..+.|...++..
T Consensus 226 ~i~~G~-nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 226 IILKGG-NYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp EECTTC-BCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred EecCCC-cCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 322100 000000 00000000012334442123456788884 4566676666677888888864
No 323
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.86 E-value=2.4 Score=38.60 Aligned_cols=108 Identities=6% Similarity=-0.136 Sum_probs=60.1
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee--CCCCCeeEEEEccCCCCCCCCcEEEEEcCCC
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS--ADTLPIRAVSWAPAESDSDSANVILTAGHGG 257 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~--~h~~~V~~v~~~p~~~~~~~~~~las~s~d~ 257 (568)
.+ ..++|+ |+|.+.++ .+|.+.-.+..+.....=...-..+. +-.. ..++.|.|++ .+.++ +++.
T Consensus 42 ~~-~~laf~--P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G------~LYav-~dG~ 108 (236)
T 1tl2_A 42 NF-KFLFLS--PGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNG------YLYAV-SKDK 108 (236)
T ss_dssp TC-SEEEEC--TTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTS------CEEEE-ETTE
T ss_pred cc-eeEEEC--CCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCC------CEEEe-CCCE
Confidence 55 789988 78877666 67776555543321100000111110 1111 4789999999 77777 4433
Q ss_pred EEEEECCCCCcce-----eee-CCCCCCeEEEEEcCCCCEEEEEeCCCcEE
Q 008363 258 LKFWDIRDPFRPL-----WDI-HPAPKFIYGLDWLPDPGCVILSFDDGAMR 302 (568)
Q Consensus 258 v~lwD~~~~~~~~-----~~~-~~h~~~i~~l~~sp~~~~l~s~~~dg~I~ 302 (568)
|.-++-.+..... ..+ ..--..+..|.|.|+|.+.++. |+.++
T Consensus 109 iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 109 LYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp EEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 8777753321111 111 1111357999999999866665 77754
No 324
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.86 E-value=7.6 Score=39.62 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=21.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLR 143 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~ 143 (568)
..|.|+|.|++ .++++-...+.|++++..++.
T Consensus 28 ~P~~~a~~pdG----------~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 28 KPHALLWGPDN----------QIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SEEEEEECTTS----------CEEEEETTTCEEEEECTTTCC
T ss_pred CceEEEEcCCC----------cEEEEEcCCCEEEEEECCCCc
Confidence 34599999999 666654443478888765443
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.32 E-value=5.1 Score=38.15 Aligned_cols=151 Identities=5% Similarity=-0.103 Sum_probs=74.1
Q ss_pred CCCEEEEEeCC-----CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-----C-EEE
Q 008363 192 PHDYLLAGCHD-----GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-----G-LKF 260 (568)
Q Consensus 192 ~g~~l~sgs~D-----g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-----~-v~l 260 (568)
++.+++.|+.+ ..+.+||+.+..+ ..+..+.........+.+ ++ .+++.|+.+ . +.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~--~~------~iyv~GG~~~~~~~~~~~~ 188 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEW----HLVAPMLTRRIGVGVAVL--NR------LLYAVGGFDGTNRLNSAEC 188 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEE----EECCCCSSCCBSCEEEEE--TT------EEEEECCBCSSCBCCCEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeE----eECCCCCccccceEEEEE--CC------EEEEEeCCCCCCcCceEEE
Confidence 45677777644 3578888876533 111111111111122222 44 677777653 3 889
Q ss_pred EECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 261 WDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 261 wD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
||+.+..- .+..+.........+.+ ++..++.|+.+ ..+.+||+.. .+. ..+..+...
T Consensus 189 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~--------~~W------~~~~~~p~~ 252 (308)
T 1zgk_A 189 YYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET--------ETW------TFVAPMKHR 252 (308)
T ss_dssp EETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT--------TEE------EECCCCSSC
T ss_pred EeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC--------CcE------EECCCCCCC
Confidence 99876531 11111111111223333 56677777654 5688999843 111 111111111
Q ss_pred CCCEEEEEEecCCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 335 SFAIWSVQVSRLTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
......+.+ ++.+++.|+.+ ..+.+||+.+..+...
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 293 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV 293 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence 111122222 56777777754 4578888887766543
No 326
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.98 E-value=11 Score=35.85 Aligned_cols=27 Identities=4% Similarity=0.021 Sum_probs=20.3
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCeeecc
Q 008363 346 LTGMVAYCSADG-----TVHRFQLTAKAVEKD 372 (568)
Q Consensus 346 ~~~~l~s~s~Dg-----~v~iwd~~~~~~~~~ 372 (568)
++.+++.|+.++ .+.+||+.+..+...
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 567778887654 588999988877654
No 327
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=89.13 E-value=2.4 Score=41.48 Aligned_cols=26 Identities=15% Similarity=0.009 Sum_probs=22.7
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEE
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAI 148 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l 148 (568)
+++++++.||.|.-+|..+|+.+-.+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~ 36 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSI 36 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEe
Confidence 58999999999999999998877554
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=88.50 E-value=4.1 Score=42.32 Aligned_cols=115 Identities=9% Similarity=0.019 Sum_probs=68.7
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEEccccccCCCCCCCCccCccccce-EEEecCCCCEEEEEEecCCCEEEEEeCCCe
Q 008363 281 YGLDWLPDPGCVILSFD-DGAMRIVSLLKAAYDVPATGKPFAGTKQQGL-HLVNCSSFAIWSVQVSRLTGMVAYCSADGT 358 (568)
Q Consensus 281 ~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l-~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~ 358 (568)
..+.++|||+++++++. +.+|.++|++++..-. .++.+. ....+ .... -.-.....+|.++|....|.-.|..
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~--~~k~~~--~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLF--AGKLAD--PRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHH--TTCCSC--GGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhh--hccccC--cccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence 46889999999999877 8999999997643100 011100 00111 1222 2234577899999966666668999
Q ss_pred EEEEEcCCC----------eeeccCCCCCcceeeee----cccCCCCceEEcccCC
Q 008363 359 VHRFQLTAK----------AVEKDHSRNRPMHFLCG----SVTEDESAITVNTPLD 400 (568)
Q Consensus 359 v~iwd~~~~----------~~~~~~~~~~~~~~~~~----s~~~~~~~i~~~~~~~ 400 (568)
|.-|++... .+.....-+.+|..++. ...++|..+.+...++
T Consensus 401 vvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~s 456 (638)
T 3sbq_A 401 VVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFS 456 (638)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCC
T ss_pred EEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccc
Confidence 999999653 12222223334444433 4466777777754433
No 329
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.34 E-value=13 Score=35.39 Aligned_cols=27 Identities=19% Similarity=0.145 Sum_probs=18.7
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeeecc
Q 008363 346 LTGMVAYCSAD-----GTVHRFQLTAKAVEKD 372 (568)
Q Consensus 346 ~~~~l~s~s~D-----g~v~iwd~~~~~~~~~ 372 (568)
++.+++.|+.+ ..+.+||+.+..+...
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 56777777643 3577899888776654
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=88.34 E-value=5.8 Score=36.07 Aligned_cols=145 Identities=6% Similarity=-0.177 Sum_probs=75.5
Q ss_pred CCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC--CCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363 193 HDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD--TLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL 270 (568)
Q Consensus 193 g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~ 270 (568)
..+|++...| +|+.=.........-......+ ++ =..+..++|+|++ .+.+. ..+.+.-.+..+.....
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G------~LYaV-~~G~Ly~~~~~t~~~~~ 74 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLI-GKGGWSNFKFLFLSPGG------ELYGV-LNDKIYKGTPPTHDNDN 74 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTS------CEEEE-ETTEEEEESCCCSTTCC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhcccc-CccccccceeEEECCCc------cEEEE-eCCeEEEECCCCCCccc
Confidence 3466666666 6554333322110000022223 22 2468899999988 66666 44336666654421111
Q ss_pred -----eeeC--CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE
Q 008363 271 -----WDIH--PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV 343 (568)
Q Consensus 271 -----~~~~--~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~ 343 (568)
..+- +... -.++.|.|+|.+.++ .||.|+-++..+ ++.-.+. ......-.+--..+..|.|
T Consensus 75 W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~-------~~~~~Wl--~~a~~vg~~gw~~~~~lff 142 (236)
T 1tl2_A 75 WMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ-------SDTDNWI--ARATEVGSGGWSGFKFLFF 142 (236)
T ss_dssp HHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC-------STTCCHH--HHSEEEECSSGGGEEEEEE
T ss_pred ccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc-------CCCCcee--ccccEeccCCCCceEEEEE
Confidence 1110 1111 368899999987776 569887776422 1211100 0000111112246789999
Q ss_pred ecCCCEEEEEeCCCeEE
Q 008363 344 SRLTGMVAYCSADGTVH 360 (568)
Q Consensus 344 sp~~~~l~s~s~Dg~v~ 360 (568)
.|+|.+.+.. |+.++
T Consensus 143 ~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 143 HPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CTTSCEEEEE--TTEEE
T ss_pred CCCceEEEEe--CCcEE
Confidence 9999877666 77754
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.98 E-value=34 Score=37.21 Aligned_cols=191 Identities=13% Similarity=0.078 Sum_probs=106.7
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
.|.++.-..++ .|..|+.+| |..||..+...... . ......|
T Consensus 64 ~i~~i~~d~~g-----------~lWigT~~G-l~~yd~~~~~f~~~---~-----------------------~~~~~~i 105 (758)
T 3ott_A 64 RIYCGVIIDNT-----------YLYMGTDNG-ILVYNYRADRYEQP---E-----------------------TDFPTDV 105 (758)
T ss_dssp CEEEEEEETTT-----------EEEEEETTE-EEEEETTTTEECCC---S-----------------------CCCCSCE
T ss_pred eEEEEEEcCCC-----------cEEEEeCCC-eEEEeCCCCEEECc---c-----------------------cCCCceE
Confidence 35466666655 677777766 78899877432210 0 0111234
Q ss_pred ceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEee-----CCCCCeeEEEEccCCCCCCCCcEEEEEcCC
Q 008363 182 PLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFS-----ADTLPIRAVSWAPAESDSDSANVILTAGHG 256 (568)
Q Consensus 182 ~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~-----~h~~~V~~v~~~p~~~~~~~~~~las~s~d 256 (568)
.++.-. +| .|..|+.+ -|..+|..+. . +..+. .....|.++....++ .+.+.. .+
T Consensus 106 -~~i~~~---~g-~lWigt~~-Gl~~~~~~~~------~-~~~~~~~~~~l~~~~i~~i~~d~~g------~lWigt-~~ 165 (758)
T 3ott_A 106 -RTMALQ---GD-TLWLGALN-GLYTYQLQSR------K-LTSFDTRRNGLPNNTIYSIIRTKDN------QIYVGT-YN 165 (758)
T ss_dssp -EEEEEE---TT-EEEEEETT-EEEEEETTTC------C-EEEECHHHHCCSCSCEEEEEECTTC------CEEEEE-TT
T ss_pred -EEEEec---CC-cEEEEcCC-cceeEeCCCC------e-EEEeccCCCCcCCCeEEEEEEcCCC------CEEEEe-CC
Confidence 555422 44 56667766 5778887644 2 22221 113458888888777 565543 45
Q ss_pred CEEEEECCCCCcceeeeCC----CCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEe
Q 008363 257 GLKFWDIRDPFRPLWDIHP----APKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN 332 (568)
Q Consensus 257 ~v~lwD~~~~~~~~~~~~~----h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~ 332 (568)
||..+|..+.......... ....|.++...+++..|..|+. +-|..||... ++. ..+..+
T Consensus 166 Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~--------~~~------~~~~~l- 229 (758)
T 3ott_A 166 GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPST--------GQI------KQTEAF- 229 (758)
T ss_dssp EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTT--------TEE------EEEEEE-
T ss_pred CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCC--------CeE------EeccCC-
Confidence 6888887754211111111 1224888888887776666664 4577888732 221 111112
Q ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCee
Q 008363 333 CSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAV 369 (568)
Q Consensus 333 ~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~ 369 (568)
....|.++....+|.+.+. +. +-|.+++..+..+
T Consensus 230 -~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~ 263 (758)
T 3ott_A 230 -HNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPL 263 (758)
T ss_dssp -EEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCC
T ss_pred -CCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcE
Confidence 2245788887777765554 44 4578888776544
No 332
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.55 E-value=20 Score=34.04 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=51.6
Q ss_pred CCCEEEEEeCC--------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC-C-----C
Q 008363 192 PHDYLLAGCHD--------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH-G-----G 257 (568)
Q Consensus 192 ~g~~l~sgs~D--------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~-d-----~ 257 (568)
++.+++.|+.+ ..+.+||+.+..+ ..+..+...... .+++. -++ .+++.|+. + .
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W----~~~~~~p~~r~~-~~~~~-~~~------~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW----GESDPLPYVVYG-HTVLS-HMD------LVYVIGGKGSDRKCLN 165 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEE----EECCCCSSCCBS-CEEEE-ETT------EEEEECCBCTTSCBCC
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcE----eECCCCCCcccc-eeEEE-ECC------EEEEEeCCCCCCcccc
Confidence 45677777742 3588888876633 222111111111 12222 344 57777765 1 3
Q ss_pred -EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC-----cEEEEEccc
Q 008363 258 -LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG-----AMRIVSLLK 308 (568)
Q Consensus 258 -v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg-----~I~lwd~~~ 308 (568)
+.+||+.+.. ..+..+.........+.+ +++.++.|+.++ .+.+||+.+
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 221 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITD 221 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTT
T ss_pred eEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCC
Confidence 8899988653 111111111111122323 567777777644 477888743
No 333
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=85.79 E-value=20 Score=34.63 Aligned_cols=27 Identities=4% Similarity=-0.026 Sum_probs=16.6
Q ss_pred cCCCEEEEEeCCC------eEEEEEcCCCeeec
Q 008363 345 RLTGMVAYCSADG------TVHRFQLTAKAVEK 371 (568)
Q Consensus 345 p~~~~l~s~s~Dg------~v~iwd~~~~~~~~ 371 (568)
.++++++.|+.++ .|.++++++.++..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~ 347 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTV 347 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEe
Confidence 3678888888653 35556776665543
No 334
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=85.70 E-value=28 Score=33.96 Aligned_cols=150 Identities=9% Similarity=0.041 Sum_probs=77.4
Q ss_pred eEEEEccCCCCCEEEEEeC-------------CCeEEEEEccCCCCCCCC--ceeEEeeCCCCCeeEEEEcc-CCCCCCC
Q 008363 183 LTMEWSTSPPHDYLLAGCH-------------DGTVALWKFVASDSSIDS--RPLLCFSADTLPIRAVSWAP-AESDSDS 246 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~-------------Dg~I~iwd~~~~~~~~~~--~~~~~~~~h~~~V~~v~~~p-~~~~~~~ 246 (568)
..|.|. |+|.++++-+. .|.|.-++....-..... .......+|.. ...|+|+| .+
T Consensus 138 ~~l~~~--pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rn-p~Gla~d~~~g----- 209 (354)
T 3a9g_A 138 GRIRFG--PDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRN-PQGIDWHRASG----- 209 (354)
T ss_dssp CCEEEC--TTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSC-CCEEEECTTTC-----
T ss_pred ceEEEC--CCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCC-cceEEEeCCCC-----
Confidence 568888 88876666432 245555554321000000 01112234544 56899999 56
Q ss_pred CcEEEEEcC-CC---EEEEECCCC---------------CcceeeeCCCCCCeEEEEEc-------CCCCEEEEEeCCCc
Q 008363 247 ANVILTAGH-GG---LKFWDIRDP---------------FRPLWDIHPAPKFIYGLDWL-------PDPGCVILSFDDGA 300 (568)
Q Consensus 247 ~~~las~s~-d~---v~lwD~~~~---------------~~~~~~~~~h~~~i~~l~~s-------p~~~~l~s~~~dg~ 300 (568)
.++++-.. +. |.+...... ..++..+.........++|. .+|.++++....+.
T Consensus 210 -~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~ 288 (354)
T 3a9g_A 210 -VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSM 288 (354)
T ss_dssp -CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTE
T ss_pred -CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCE
Confidence 66665433 22 443322110 02333331122356788883 46766666556778
Q ss_pred EEEEEccccccCCCCCCCCccCccccceEEE-ecCCCCEEEEEEecCCCEEEEEe
Q 008363 301 MRIVSLLKAAYDVPATGKPFAGTKQQGLHLV-NCSSFAIWSVQVSRLTGMVAYCS 354 (568)
Q Consensus 301 I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~-~~h~~~V~~l~~sp~~~~l~s~s 354 (568)
|...++.. .|+.. ....+ .+....+..+++.|+|.++++..
T Consensus 289 v~~~~~~~-------~g~~~------~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 289 LAAVNFGD-------NMEVR------KISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEEECG-------GGCEE------EEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEEECC-------CCccc------ceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 88888742 11110 01122 22245788999999997666654
No 335
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=83.57 E-value=13 Score=35.93 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=15.7
Q ss_pred CCCEEEEEeC-C---------CeEEEEEccCCC
Q 008363 192 PHDYLLAGCH-D---------GTVALWKFVASD 214 (568)
Q Consensus 192 ~g~~l~sgs~-D---------g~I~iwd~~~~~ 214 (568)
++.+++.|+. + ..+.+||+.+..
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~ 97 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTE
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCc
Confidence 4567777765 2 358888888663
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.44 E-value=26 Score=37.89 Aligned_cols=160 Identities=9% Similarity=0.102 Sum_probs=79.2
Q ss_pred CCCEEEEEeCCC------eEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC--C-EEEEE
Q 008363 192 PHDYLLAGCHDG------TVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG--G-LKFWD 262 (568)
Q Consensus 192 ~g~~l~sgs~Dg------~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d--~-v~lwD 262 (568)
++.+++.|+.++ .+.+||+.+..+ ..+..+..... -.+++...++ .+++.||.+ + +.+||
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W----~~~~~~p~~R~-~h~~~~~~~~------~iyv~GG~~~~~~v~~yd 519 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREW----SMIKSLSHTRF-RHSACSLPDG------NVLILGGVTEGPAMLLYN 519 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEE----EECCCCSBCCB-SCEEEECTTS------CEEEECCBCSSCSEEEEE
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcE----EECCCCCCCcc-cceEEEEcCC------EEEEECCCCCCCCEEEEE
Confidence 567888887543 477888876533 22211111111 1223332355 688888765 2 89999
Q ss_pred CCCCCcceee----eCCCCCCeEEEEEcCC-CCEEEEEeC--C-----CcEEEEEccccccCCCCCCCCccCccccceEE
Q 008363 263 IRDPFRPLWD----IHPAPKFIYGLDWLPD-PGCVILSFD--D-----GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHL 330 (568)
Q Consensus 263 ~~~~~~~~~~----~~~h~~~i~~l~~sp~-~~~l~s~~~--d-----g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~ 330 (568)
+.+..-.... +........++.+..+ +..++.||. + +.+.+||+.. ...........+..
T Consensus 520 ~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--------~~w~~~~~W~~~~~ 591 (695)
T 2zwa_A 520 VTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--------ENATEPITVIKKLQ 591 (695)
T ss_dssp TTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--------TCSSCCEEEEEEEE
T ss_pred CCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--------CccccceEEEEcCC
Confidence 8875311111 1111112233555655 666677765 2 3588899854 21000000011111
Q ss_pred Ee-cCCCCEEEEEEecCCCEEEEEeCC--------CeEEEEEcCCCeeec
Q 008363 331 VN-CSSFAIWSVQVSRLTGMVAYCSAD--------GTVHRFQLTAKAVEK 371 (568)
Q Consensus 331 ~~-~h~~~V~~l~~sp~~~~l~s~s~D--------g~v~iwd~~~~~~~~ 371 (568)
.. ...... +++...++.+++.||.+ ..|.+||+.+..+..
T Consensus 592 ~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~ 640 (695)
T 2zwa_A 592 HPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTS 640 (695)
T ss_dssp CGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEE
T ss_pred CCCCCcccc-eEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEEE
Confidence 10 111111 22233336777777743 468999998887763
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=81.92 E-value=35 Score=32.24 Aligned_cols=103 Identities=10% Similarity=0.007 Sum_probs=49.8
Q ss_pred CCCEEEEEeCC-------CeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC------CC-
Q 008363 192 PHDYLLAGCHD-------GTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH------GG- 257 (568)
Q Consensus 192 ~g~~l~sgs~D-------g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~------d~- 257 (568)
++.+++.|+.+ ..+.+||+.+..+ ..+..+...... .+++. .++ .+++.|+. -.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~-~~~~~-~~~------~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW----SEVKNLPIKVYG-HNVIS-HNG------MIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE----EEECCCSSCEES-CEEEE-ETT------EEEEECCEESSSCBCCC
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCE----eECCCCCCcccc-cEEEE-ECC------EEEEEcCCCCCCCccce
Confidence 45677888754 2477888876533 111111100001 12222 344 57777653 13
Q ss_pred EEEEECCCCCc-ceeeeCCCCCCeEEEEEcCCCCEEEEEeCC-----CcEEEEEccc
Q 008363 258 LKFWDIRDPFR-PLWDIHPAPKFIYGLDWLPDPGCVILSFDD-----GAMRIVSLLK 308 (568)
Q Consensus 258 v~lwD~~~~~~-~~~~~~~h~~~i~~l~~sp~~~~l~s~~~d-----g~I~lwd~~~ 308 (568)
+.+||+.+..- .+..+.........+.+ ++..++.|+.+ ..+.+||+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~ 231 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKT 231 (318)
T ss_dssp EEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCC
Confidence 88999886531 11111111111122222 56777777653 3467788743
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=80.74 E-value=15 Score=39.63 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=77.4
Q ss_pred CCCEEEEEeCC----CeEEEEEccCCCCCCCCceeE-Eee----CCCCCeeEEEEcc-CCCCCCCCcEEEEEcCC-----
Q 008363 192 PHDYLLAGCHD----GTVALWKFVASDSSIDSRPLL-CFS----ADTLPIRAVSWAP-AESDSDSANVILTAGHG----- 256 (568)
Q Consensus 192 ~g~~l~sgs~D----g~I~iwd~~~~~~~~~~~~~~-~~~----~h~~~V~~v~~~p-~~~~~~~~~~las~s~d----- 256 (568)
++.+++.|+.+ ..+.+||..+..+ ..+. .+. .....-.+++..+ ++ .+++.||.+
T Consensus 397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W----~~~~~~~p~~~~p~~R~~hs~~~~~~~~------~lyv~GG~~~~~~~ 466 (695)
T 2zwa_A 397 GNDVFYMGGSNPYRVNEILQLSIHYDKI----DMKNIEVSSSEVPVARMCHTFTTISRNN------QLLLIGGRKAPHQG 466 (695)
T ss_dssp SSCEEEECCBSSSBCCCEEEEEECSSCE----EEEECCCCCSCCCCCCBSCEEEEETTTT------EEEEECCBSSTTCB
T ss_pred CCEEEEECCCCCCCcCcEEEEECCCCeE----EEeccCCCCCCCCccccceEEEEEccCC------EEEEEcCCCCCCCc
Confidence 45677888754 3588888886633 2222 100 0111122333333 55 677777642
Q ss_pred -C-EEEEECCCCC-cceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEccccccCCCCCCCCccCccccceEE-
Q 008363 257 -G-LKFWDIRDPF-RPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHL- 330 (568)
Q Consensus 257 -~-v~lwD~~~~~-~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~- 330 (568)
. +.+||+.+.. ..+..+. ....-.+++...++..++.||.++ .+.+||+.... . ..+..
T Consensus 467 ~~dv~~yd~~t~~W~~~~~~p-~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--------W------~~~~~~ 531 (695)
T 2zwa_A 467 LSDNWIFDMKTREWSMIKSLS-HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--------F------KDVTPK 531 (695)
T ss_dssp CCCCEEEETTTTEEEECCCCS-BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--------E------EECCCS
T ss_pred cccEEEEeCCCCcEEECCCCC-CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--------e------EEccCC
Confidence 3 7889988642 1111111 111112333434788888887644 78899985411 1 00000
Q ss_pred --EecCCCCEEEEEEecC-CCEEEEEeC--C-----CeEEEEEcCCCe
Q 008363 331 --VNCSSFAIWSVQVSRL-TGMVAYCSA--D-----GTVHRFQLTAKA 368 (568)
Q Consensus 331 --~~~h~~~V~~l~~sp~-~~~l~s~s~--D-----g~v~iwd~~~~~ 368 (568)
+........++.+... +.+++.|+. + ..+.+||+.+..
T Consensus 532 g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 532 DEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 0101111123445555 567777765 2 458899988766
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.47 E-value=18 Score=42.16 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=71.9
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCCcce
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPFRPL 270 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~~~~ 270 (568)
|....||.=. ..++.|+|+.+. ..+..+.- ...|.--.|-.. +.|+-.+...|.-|++.+...|+
T Consensus 75 P~~~iiALra-g~~lQiFnl~~k------~klks~~~-~e~VvfWkWis~-------~~l~lVT~~aVyHW~~~~~s~P~ 139 (1630)
T 1xi4_A 75 PASKVIALKA-GKTLQIFNIEMK------SKMKAHTM-TDDVTFWKWISL-------NTVALVTDNAVYHWSMEGESQPV 139 (1630)
T ss_pred CCcceEEEec-CCeEEEeehHHh------hhhccccc-CCCceEEEecCC-------CeeEEEcCCeEEEeccCCCCccH
Confidence 4555666554 679999999876 44554433 345666677666 47888877779999998655676
Q ss_pred eeeCCC----CCCeEEEEEcCCCCEEEEEeC-------CCcEEEEEccc
Q 008363 271 WDIHPA----PKFIYGLDWLPDPGCVILSFD-------DGAMRIVSLLK 308 (568)
Q Consensus 271 ~~~~~h----~~~i~~l~~sp~~~~l~s~~~-------dg~I~lwd~~~ 308 (568)
..+..| ...|..-..+++.++++..|- .|.+.+|....
T Consensus 140 k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er 188 (1630)
T 1xi4_A 140 KMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 188 (1630)
T ss_pred HHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc
Confidence 556554 445777778899998886532 57889998854
No 340
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=79.10 E-value=49 Score=32.16 Aligned_cols=226 Identities=11% Similarity=0.091 Sum_probs=109.5
Q ss_pred eeeEEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEeccCCccCCCCceEEEeecceecccccCCcCcc
Q 008363 102 VAWDVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIYLSSMKEGTDPRFVKLEPVFRCSMLKCGGTQSI 181 (568)
Q Consensus 102 ~v~~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~h~~~V 181 (568)
..|.|+|.|++ .+|++--..|.|++++..++... .+.. + + ..........
T Consensus 33 ~P~~ia~~pdG----------~llVter~~G~I~~v~~~~g~~~-~v~~-------------~-~-----~v~~~g~~Gl 82 (347)
T 3das_A 33 SPWGLAPLPGG----------DLLVSSRDEATITRVDAKTGRKT-ELGE-------------V-P-----GVSPSGEGGL 82 (347)
T ss_dssp SEEEEEECTTS----------CEEEEETTTCEEEEECTTTCCEE-EEEE-------------C-T-----TCCCBTTBSE
T ss_pred CceEEEEcCCC----------cEEEEEecCCEEEEEECCCCcEe-eecc-------------c-C-----ceeecCCCCc
Confidence 45699999999 66666555899999886554432 1100 0 0 0001222333
Q ss_pred ceEEEEccC--CCCCEEEEEe--CCCeEEEEEccCCCC----CCCCce-eEEee-CCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 182 PLTMEWSTS--PPHDYLLAGC--HDGTVALWKFVASDS----SIDSRP-LLCFS-ADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 182 ~~~v~~s~~--~~g~~l~sgs--~Dg~I~iwd~~~~~~----~~~~~~-~~~~~-~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
+.|+++|. .++.+.++-+ .++.|.-|.+..... ....+. +..+. ........|+|.|++ .+++
T Consensus 83 -lGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG------~Lyv 155 (347)
T 3das_A 83 -LGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK------MLYA 155 (347)
T ss_dssp -EEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS------CEEE
T ss_pred -eeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC------CEEE
Confidence 78998831 1343434322 345566666554211 001122 22232 111234679999999 7877
Q ss_pred EEcC-------------CC-EEEEECCCC--------CcceeeeCCCCCCeEEEEEcCCCCEEEEE-eCCCcEEEEEccc
Q 008363 252 TAGH-------------GG-LKFWDIRDP--------FRPLWDIHPAPKFIYGLDWLPDPGCVILS-FDDGAMRIVSLLK 308 (568)
Q Consensus 252 s~s~-------------d~-v~lwD~~~~--------~~~~~~~~~h~~~i~~l~~sp~~~~l~s~-~~dg~I~lwd~~~ 308 (568)
+.++ .+ |.-.+.... ...++. .+|.. ...++|+|+|...++- +.|+.-.|.-+..
T Consensus 156 t~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a-~G~RN-p~Gla~dp~G~L~~~d~g~~~~deln~i~~ 233 (347)
T 3das_A 156 GTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYS-YGHRN-VQGLAWDDKQRLFASEFGQDTWDELNAIKP 233 (347)
T ss_dssp ECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEE-BCCSB-CCEEEECTTCCEEEEECCSSSCEEEEEECT
T ss_pred EECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEe-eCCCC-cceEEECCCCCEEEEecCCCCCceeeEEcC
Confidence 7653 13 444454422 011222 24433 4689999988755543 3344333333322
Q ss_pred cc-cCCCC-CCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCC
Q 008363 309 AA-YDVPA-TGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 309 ~~-~~~~~-~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
-. +..|. .|..-......++..+..+......++|.. +.+++..-..+.|....+...
T Consensus 234 G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~-g~~~~~~l~~~~l~~v~~~~~ 293 (347)
T 3das_A 234 GDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE-GSVWMAGLRGERLWRIPLKGT 293 (347)
T ss_dssp TCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET-TEEEEEESTTCSEEEEEEETT
T ss_pred CCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc-CceeeccccCCEEEEEEecCC
Confidence 11 11110 111000011244556654444667888863 555554444556666666443
No 341
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=78.66 E-value=16 Score=37.23 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=60.3
Q ss_pred ceEEEEccCCCCC-EEEEEeCCCeEEEEEccCCCCCCCCceeEEee---------CCCCCeeEEEEccCCCCCCCCcEEE
Q 008363 182 PLTMEWSTSPPHD-YLLAGCHDGTVALWKFVASDSSIDSRPLLCFS---------ADTLPIRAVSWAPAESDSDSANVIL 251 (568)
Q Consensus 182 ~~~v~~s~~~~g~-~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~---------~h~~~V~~v~~~p~~~~~~~~~~la 251 (568)
|+.|+|. |+|. .|+++...|.|++++...... ...+..+. ........|+|+|+- ..+..+++
T Consensus 16 P~~~a~~--pdG~~rl~V~er~G~i~~~~~~g~~~---~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f--~~n~~lYv 88 (463)
T 2wg3_C 16 PVGALHS--GDGSQRLFILEKEGYVKILTPEGEIF---KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNY--KKNGKLYV 88 (463)
T ss_dssp EEEEECC--SSSSCCEEEEETTTEEEEECTTSCBC---SSCSEECTTTBCCCCSSSCCCSEEEEEECTTH--HHHCEEEE
T ss_pred ceEEEEC--CCCCeEEEEEeCCceEEEEeCCCCee---eeeecCCcceeccCccccCCCcceeeEeCCCC--cCCCEEEE
Confidence 5899988 7875 566667899999997542211 01222211 124568899999961 00114555
Q ss_pred EEcC----------C---CEEEEECCCC---------CcceeeeC--CCCCCeEEEEEcCCCCEEEEEeCC
Q 008363 252 TAGH----------G---GLKFWDIRDP---------FRPLWDIH--PAPKFIYGLDWLPDPGCVILSFDD 298 (568)
Q Consensus 252 s~s~----------d---~v~lwD~~~~---------~~~~~~~~--~h~~~i~~l~~sp~~~~l~s~~~d 298 (568)
+-+. + .|.-|.+... .+.+..+. ........|.|.|||.+.++.++.
T Consensus 89 ~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 89 SYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred EEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 4331 1 2444555421 12222221 112235899999999877776653
No 342
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.32 E-value=57 Score=30.91 Aligned_cols=100 Identities=10% Similarity=-0.027 Sum_probs=56.3
Q ss_pred EEccCCCCCCCCcEEEEEc---CC-C-EEEEECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeC-CCcEEEEEcccc
Q 008363 236 SWAPAESDSDSANVILTAG---HG-G-LKFWDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFD-DGAMRIVSLLKA 309 (568)
Q Consensus 236 ~~~p~~~~~~~~~~las~s---~d-~-v~lwD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~-dg~I~lwd~~~~ 309 (568)
.|++.+ ..|+-.. .+ . |..-++... ....+..+.. ..|+|+++.|+-.+. ...|+..++.
T Consensus 110 ~~s~~g------~~Iy~~~~~~~~~~~Iy~~~~dGs--~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~-- 175 (302)
T 3s25_A 110 YASLIG------NYIYYLHYDTQTATSLYRIRIDGE--EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTA-- 175 (302)
T ss_dssp EEEEET------TEEEEEEESSSSCEEEEEEETTSC--CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETT--
T ss_pred EEEEeC------CEEEEEeecCCCCceEEEEECCCC--CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECC--
Confidence 677777 5666554 22 3 666677643 2333333332 456788999887765 5678777773
Q ss_pred ccCCCCCCCCccCccccceEEEecCCCCEEEEEEecCCCEEEEEeCCC--eEEEEEcCCC
Q 008363 310 AYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQVSRLTGMVAYCSADG--TVHRFQLTAK 367 (568)
Q Consensus 310 ~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg--~v~iwd~~~~ 367 (568)
|... ..+. .+... ..++|++.+|+-...++ .|..-++...
T Consensus 176 -------g~~~--------~~l~--~~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~ 217 (302)
T 3s25_A 176 -------SQSE--------ALFY--DCNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNP 217 (302)
T ss_dssp -------TTEE--------EEEE--CSCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSC
T ss_pred -------CCCE--------EEEe--CCCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCC
Confidence 2111 1221 12222 34668988888776543 4555555443
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=73.63 E-value=1e+02 Score=33.20 Aligned_cols=150 Identities=13% Similarity=0.130 Sum_probs=83.0
Q ss_pred ccceEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEE
Q 008363 180 SIPLTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLK 259 (568)
Q Consensus 180 ~V~~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~ 259 (568)
.| .++.-. .+| .|..|+.+| +..||..+... ..........|.++.. .++ .+.+ ++.++|.
T Consensus 64 ~i-~~i~~d--~~g-~lWigT~~G-l~~yd~~~~~f------~~~~~~~~~~i~~i~~-~~g------~lWi-gt~~Gl~ 124 (758)
T 3ott_A 64 RI-YCGVII--DNT-YLYMGTDNG-ILVYNYRADRY------EQPETDFPTDVRTMAL-QGD------TLWL-GALNGLY 124 (758)
T ss_dssp CE-EEEEEE--TTT-EEEEEETTE-EEEEETTTTEE------CCCSCCCCSCEEEEEE-ETT------EEEE-EETTEEE
T ss_pred eE-EEEEEc--CCC-cEEEEeCCC-eEEEeCCCCEE------ECcccCCCceEEEEEe-cCC------cEEE-EcCCcce
Confidence 45 666544 454 777777665 77899775421 1111111234777754 344 4444 4445898
Q ss_pred EEECCCCCcceeeeC-----CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEec-
Q 008363 260 FWDIRDPFRPLWDIH-----PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNC- 333 (568)
Q Consensus 260 lwD~~~~~~~~~~~~-----~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~- 333 (568)
.+|..+.. +..+. .....|.++....++...+ ++.+ -|..||... ++. ..+..
T Consensus 125 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~--------~~~---------~~~~~~ 183 (758)
T 3ott_A 125 TYQLQSRK--LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSN--------GKF---------EGIPLP 183 (758)
T ss_dssp EEETTTCC--EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTT--------TEE---------EEECCC
T ss_pred eEeCCCCe--EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCC--------Cce---------EEecCC
Confidence 99987542 22221 1134588888888877554 5554 477787632 111 11110
Q ss_pred -----CCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeee
Q 008363 334 -----SSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVE 370 (568)
Q Consensus 334 -----h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~ 370 (568)
....|.++....++..|-.|+. +-|..++..++.+.
T Consensus 184 ~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~ 224 (758)
T 3ott_A 184 VHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIK 224 (758)
T ss_dssp CCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEE
T ss_pred CccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEE
Confidence 1234788888777665444553 46778887765543
No 344
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=72.32 E-value=46 Score=37.41 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCEEEEEeCCCcEEEEEccc
Q 008363 279 FIYGLDWLPDPGCVILSFDDGAMRIVSLLK 308 (568)
Q Consensus 279 ~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~ 308 (568)
.+.+++..++..++++-+.|+++|+|++.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t 266 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLST 266 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTT
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCC
Confidence 467788888899999999999999999854
No 345
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=71.18 E-value=91 Score=31.47 Aligned_cols=152 Identities=14% Similarity=0.146 Sum_probs=93.5
Q ss_pred cCCCCCEEEEEe-------CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363 189 TSPPHDYLLAGC-------HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG- 257 (568)
Q Consensus 189 ~~~~g~~l~sgs-------~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~- 257 (568)
..++.++++..+ -.|.+.+|.++.. .-+.+.||.+....+.+.... ....+|+-+.. ++
T Consensus 158 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~g~k 227 (494)
T 1bpo_A 158 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGK 227 (494)
T ss_dssp ECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-------CEEEECCSEEEEEEEECTTCS---SEEEEEEEEECSTTCCE
T ss_pred ECCCCCeEEEEeecccCCcccceEEEeecccc-------ccchheeeeeeeEEEecCCCC---CCceEEEEEEecCCCcE
Confidence 336667665433 2477899998744 456777887765555443221 11235555544 25
Q ss_pred EEEEECCCC--C------cceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 258 LKFWDIRDP--F------RPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 258 v~lwD~~~~--~------~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
++|-++... . +.+..+. ...+.--++..++....++.-+.-|.|++||+. +|.++
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle--------Tgt~i------ 293 (494)
T 1bpo_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE--------TGTCI------ 293 (494)
T ss_dssp EEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT--------TCCEE------
T ss_pred EEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc--------cceee------
Confidence 999999654 1 1111111 224445688899988999999999999999994 46443
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
..-+-....|...+-+....-++.....|.|.--.++.
T Consensus 294 --~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 294 --YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp --EEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred --eeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 34444556666655655555566666788777666643
No 346
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=69.71 E-value=43 Score=34.91 Aligned_cols=109 Identities=7% Similarity=-0.082 Sum_probs=63.6
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcC-CC-EEEEECCCC-----------Ccce-eeeCCCCCCeEEEEEcCCCCEEEEE-
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGH-GG-LKFWDIRDP-----------FRPL-WDIHPAPKFIYGLDWLPDPGCVILS- 295 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~-d~-v~lwD~~~~-----------~~~~-~~~~~h~~~i~~l~~sp~~~~l~s~- 295 (568)
....+.++|+| ++++.++. +. |.++|++.- ...+ .... -.-.....+|.++| ..+++
T Consensus 324 sPHGv~vsPDG------kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtl 395 (638)
T 3sbq_A 324 NPHGCNTSSDG------KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTL 395 (638)
T ss_dssp SCCCEEECTTS------CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEE
T ss_pred CCcceeeCCCC------CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeee
Confidence 34678899999 66666655 44 999999842 0111 1111 23345788999999 45554
Q ss_pred eCCCcEEEEEccccccCCCCCCCCccCccccceEEEecCCCCEEEEEE------ecCCCEEEEEe
Q 008363 296 FDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAIWSVQV------SRLTGMVAYCS 354 (568)
Q Consensus 296 ~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V~~l~~------sp~~~~l~s~s 354 (568)
--|..|.-|++...-.. ..|+.+. ..+..+..|-++- .+.- .++|++|++..
T Consensus 396 fidSqvvkWni~~a~~~--~~g~~~~----~v~~k~dv~YqpG-H~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 396 FIDSQVVKWNMEEAVRA--YKGEKVN----YIKQKLDVHYQPG-HLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp TTTTEEEEEEHHHHHHH--HTTCCCC----CEEEEEECSSCEE-EEEETTTTSTTCCSCEEEEEE
T ss_pred eecceEEEEeccHHHHH--hcCccCC----eeeeccccccCCc-ccccCCCccCCCCccEEEEec
Confidence 45999999999653100 0122211 2234555555443 2322 46788888875
No 347
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=59.61 E-value=1.2e+02 Score=28.63 Aligned_cols=139 Identities=10% Similarity=0.026 Sum_probs=72.0
Q ss_pred EEEccCCCCCEEEEEe--CCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCC-C-EEE
Q 008363 185 MEWSTSPPHDYLLAGC--HDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHG-G-LKF 260 (568)
Q Consensus 185 v~~s~~~~g~~l~sgs--~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d-~-v~l 260 (568)
..|+ ++++.|+-.. .++.-.||.+... +.....+..+.. .+|++.+ ..|.-.+.+ . |..
T Consensus 109 ~~~s--~~g~~Iy~~~~~~~~~~~Iy~~~~d-----Gs~~~~lt~~~~----~~~~~~g------~~iy~t~~g~~~Iy~ 171 (302)
T 3s25_A 109 IYAS--LIGNYIYYLHYDTQTATSLYRIRID-----GEEKKKIKNHYL----FTCNTSD------RYFYYNNPKNGQLYR 171 (302)
T ss_dssp EEEE--EETTEEEEEEESSSSCEEEEEEETT-----SCCCEEEESSCC----CCSEEET------TEEEEECTTTCCEEE
T ss_pred cEEE--EeCCEEEEEeecCCCCceEEEEECC-----CCCeEEEeCCCc----eEeeEEC------CEEEEEeCCCceEEE
Confidence 3555 5677777665 3444444444322 122233433332 3457777 555555543 4 888
Q ss_pred EECCCCCcceeeeCCCCCCeEEEEEcCCCCEEEEEeCCC--cEEEEEccccccCCCCCCCCccCccccceEEEecCCCCE
Q 008363 261 WDIRDPFRPLWDIHPAPKFIYGLDWLPDPGCVILSFDDG--AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSSFAI 338 (568)
Q Consensus 261 wD~~~~~~~~~~~~~h~~~i~~l~~sp~~~~l~s~~~dg--~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~~~V 338 (568)
-++... .....+. +... ..++|++.+|+-....+ .|..-++. |... ..+. ...+
T Consensus 172 ~~l~g~-~~~~l~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld---------G~~~--------~~Lt--~~~~ 227 (302)
T 3s25_A 172 YDTASQ-SEALFYD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN---------NPNP--------VVLT--EANI 227 (302)
T ss_dssp EETTTT-EEEEEEC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSS---------SCCC--------EECS--CSCE
T ss_pred EECCCC-CEEEEeC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECC---------CCCe--------EEEe--CCCc
Confidence 888765 3222232 2233 34669999998876533 45554552 2221 2222 1222
Q ss_pred EEEEEecCCCEEEEEeC--CCeEEEEEcCC
Q 008363 339 WSVQVSRLTGMVAYCSA--DGTVHRFQLTA 366 (568)
Q Consensus 339 ~~l~~sp~~~~l~s~s~--Dg~v~iwd~~~ 366 (568)
..|+|++.+|..++. .+.|..-++..
T Consensus 228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp --EEEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred --ceEEECCCEEEEEECCCCcEEEEEECCC
Confidence 347888888876642 34555555543
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=55.51 E-value=71 Score=35.87 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=27.7
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF 225 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 225 (568)
.++... ++..++++-|.|+++|+|++.++ .++.+.
T Consensus 239 ~~~~~~--~~~~~lftl~~D~~LRiWsl~t~------~~v~t~ 273 (950)
T 4gq2_M 239 ISMIFL--STYNVLVMLSLDYKLKVLDLSTN------QCVETI 273 (950)
T ss_dssp EEEEEE--TTTTEEEEEETTCEEEEEETTTT------EEEEEE
T ss_pred EEEeec--CCCcEEEEEECCCEEEEEECCCC------CeEeee
Confidence 556655 66779999999999999999977 666554
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=53.93 E-value=1.9e+02 Score=29.22 Aligned_cols=118 Identities=10% Similarity=0.028 Sum_probs=59.2
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC--cceeeeC-----C----CCCCeEEEEEcCC---CCEEEEE
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF--RPLWDIH-----P----APKFIYGLDWLPD---PGCVILS 295 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~--~~~~~~~-----~----h~~~i~~l~~sp~---~~~l~s~ 295 (568)
.....|+|.|++ ...+|++--.+.|++++..... .++..+. + .......|+|+|+ ..+|++.
T Consensus 14 ~~P~~~a~~pdG----~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~ 89 (463)
T 2wg3_C 14 RQPVGALHSGDG----SQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVS 89 (463)
T ss_dssp SSEEEEECCSSS----SCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEECCCC----CeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEE
Confidence 346789999998 1126666543339999754321 1222221 1 1456789999996 2334433
Q ss_pred -eC--CC----------cEEEEEccccccCCCCCCCCccCccccceEEEe--cCCCCEEEEEEecCCCEEEEEeCCC
Q 008363 296 -FD--DG----------AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVN--CSSFAIWSVQVSRLTGMVAYCSADG 357 (568)
Q Consensus 296 -~~--dg----------~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~--~h~~~V~~l~~sp~~~~l~s~s~Dg 357 (568)
+. ++ .|.-|.+.... .........+.|..+. ........|+|.|||.+.++.+..+
T Consensus 90 yt~~~~~~~~~~~~~~~~v~r~~~~~~~------~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 90 YTTNQERWAIGPHDHILRVVEYTVSRKN------PHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEECCCSSCSSSSCEEEEEEEEEBCTTC------TTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EeCCCCCcccCCcccceEEEEEEEcCCC------CCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 22 11 33334443210 0000000111222222 1123457899999998777776543
No 350
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=52.80 E-value=1.6e+02 Score=28.21 Aligned_cols=41 Identities=12% Similarity=0.002 Sum_probs=26.6
Q ss_pred cceEEEecCCCCEEEEEEec-------CCCEEEEEeCCCeEEEEEcCCC
Q 008363 326 QGLHLVNCSSFAIWSVQVSR-------LTGMVAYCSADGTVHRFQLTAK 367 (568)
Q Consensus 326 ~~l~~~~~h~~~V~~l~~sp-------~~~~l~s~s~Dg~v~iwd~~~~ 367 (568)
.++..+..| ..+..+.|.. ++.++++.-..+.|...++..+
T Consensus 262 ~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~ 309 (353)
T 2g8s_A 262 QPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD 309 (353)
T ss_dssp CCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred CCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence 344455544 4667888864 4666666667788888887654
No 351
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=50.23 E-value=1.8e+02 Score=28.04 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=88.9
Q ss_pred cCCCCCEEEEEeC-------CCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcC---CC-
Q 008363 189 TSPPHDYLLAGCH-------DGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGH---GG- 257 (568)
Q Consensus 189 ~~~~g~~l~sgs~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~---d~- 257 (568)
..++.++++..+- .|.+.||..+.. ..+.+.+|.+....+.+.... ....+|+-+.. ++
T Consensus 159 ~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-------~sQ~ieGhaa~F~~~~~~g~~---~~~~lf~fa~r~~~g~k 228 (365)
T 2xzh_A 159 TDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNA---EESTLFCFAVRGQAGGK 228 (365)
T ss_dssp ECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-------EEEEECCSEEEEEEECCTTCS---SCEEEEEEEEEETTEEE
T ss_pred ECCCCCEEEEEeEeccCCccceeEEEEeeccc-------ccceeeeeeeeeEEEecCCCC---CCceEEEEEEecCCCcE
Confidence 3366666554332 377889998743 556777886655444332221 11235554433 24
Q ss_pred EEEEECCCC--C------cceeeeC---CCCCCeEEEEEcCCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCcccc
Q 008363 258 LKFWDIRDP--F------RPLWDIH---PAPKFIYGLDWLPDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQ 326 (568)
Q Consensus 258 v~lwD~~~~--~------~~~~~~~---~h~~~i~~l~~sp~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~ 326 (568)
+++-++... . +.+..+. ...+.--++..++....++.-+.-|.|++||+. +|.++
T Consensus 229 LhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDle--------Tgt~i------ 294 (365)
T 2xzh_A 229 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE--------TGTCI------ 294 (365)
T ss_dssp EEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETT--------TCCEE------
T ss_pred EEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcc--------cCcEE------
Confidence 999998543 1 1111111 124445688888888889999999999999994 46443
Q ss_pred ceEEEecCCCCEEEEEEecCCCEEEEEeCCCeEEEEEcC
Q 008363 327 GLHLVNCSSFAIWSVQVSRLTGMVAYCSADGTVHRFQLT 365 (568)
Q Consensus 327 ~l~~~~~h~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~ 365 (568)
..-+-....|..-+-+....-++.....|.|.--.++
T Consensus 295 --~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~ 331 (365)
T 2xzh_A 295 --YMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVE 331 (365)
T ss_dssp --EEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEEC
T ss_pred --EEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEEC
Confidence 3444445566555555444445555577776665553
No 352
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=49.34 E-value=1e+02 Score=33.20 Aligned_cols=28 Identities=25% Similarity=0.539 Sum_probs=24.9
Q ss_pred cEEEEEeCCCcEEEEECCCCceeeEEec
Q 008363 123 GYLAVLLGNGSLEVWEVPLLRTMKAIYL 150 (568)
Q Consensus 123 ~~las~s~dg~V~iwd~~~~~~~~~l~~ 150 (568)
.+|++-+.|.++|+|++.+++++....-
T Consensus 232 ~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 232 RYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp TEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred cEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 6999999999999999999998877644
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=39.56 E-value=25 Score=34.14 Aligned_cols=104 Identities=10% Similarity=0.104 Sum_probs=56.0
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCC-CCCeeEEEEccCCCCCCCCcEEEEE-cCCC-EEEEECCCCCcce
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSAD-TLPIRAVSWAPAESDSDSANVILTA-GHGG-LKFWDIRDPFRPL 270 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~~~~~~las~-s~d~-v~lwD~~~~~~~~ 270 (568)
.++++++.||.|.-+|..++ +.+-.+... ..++.... .+.. ......++.. ..|| |..+|..++ ...
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG------~~~W~~~~~~~~p~~~~~-~~~~--~~~~~~~vv~p~~dG~l~a~~~~~G-~~~ 80 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG------HIIWSIEPENFQPLIEIQ-EPSR--LETYETLIIEPFGDGNIYYFNAHQG-LQK 80 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT------EEEEEECGGGSCCSEECC-CSCT--TTSSEEEEECCSTTTEEEEEETTTE-EEE
T ss_pred CEEEEEeCCCeEEEEECCCC------cEEEEecCCccCCcEEec-CCcc--ccCCcEEEEEECCCCEEEEEECCCC-cEE
Confidence 58999999999999998876 666665432 12222111 0100 0011334343 4677 888887766 222
Q ss_pred eeeC----CCCCCeEE---EEE-c----CCCCEEEEEeCCCcEEEEEcc
Q 008363 271 WDIH----PAPKFIYG---LDW-L----PDPGCVILSFDDGAMRIVSLL 307 (568)
Q Consensus 271 ~~~~----~h~~~i~~---l~~-s----p~~~~l~s~~~dg~I~lwd~~ 307 (568)
..+. ....++.. ... . -.+..+++|+.+|.++..|++
T Consensus 81 ~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~ 129 (339)
T 2be1_A 81 LPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML 129 (339)
T ss_dssp EEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT
T ss_pred eeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC
Confidence 2221 01122211 000 0 135568888889999999984
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=38.80 E-value=67 Score=36.91 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=27.3
Q ss_pred eEEEEccCCCCCEEEEEeCCCeEEEEEccCCCCCCCCceeEEe
Q 008363 183 LTMEWSTSPPHDYLLAGCHDGTVALWKFVASDSSIDSRPLLCF 225 (568)
Q Consensus 183 ~~v~~s~~~~g~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~ 225 (568)
.+++.. ++..++++-+.|+++|||++.++ .++.+.
T Consensus 241 vs~~~~--~~~~~lftL~~D~~LRiWsl~t~------~~v~t~ 275 (1139)
T 4fhn_B 241 ISMIFL--STYNVLVMLSLDYKLKVLDLSTN------QCVETI 275 (1139)
T ss_dssp SCCEEE--TTTTEEEEEBTTCEEEEEETTTT------EEEEEE
T ss_pred EEeecc--CCccEEEEEeCCCEEEEEECCCC------CeEEee
Confidence 445544 56679999999999999999977 666654
No 355
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=36.95 E-value=2.7e+02 Score=26.15 Aligned_cols=158 Identities=15% Similarity=0.179 Sum_probs=80.0
Q ss_pred CCCEEEEEeCCCeEEEEEccCCCCCC-C--CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCE---EEEECCC
Q 008363 192 PHDYLLAGCHDGTVALWKFVASDSSI-D--SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGL---KFWDIRD 265 (568)
Q Consensus 192 ~g~~l~sgs~Dg~I~iwd~~~~~~~~-~--~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v---~lwD~~~ 265 (568)
+...+++.+.+|.|+--.+..-.... . ......++.+..-+..+..+... .+++..+.+.+ .++++..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~------~ll~fT~~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHD------HILCFSSRGRVYSMKVYQLPE 75 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTC------EEEEEETTSEEEEEEGGGSCC
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCC------EEEEEECCCEEEEEEhhHCcC
Confidence 44678899999999877664311000 0 01111222322323333333333 45555555543 3345543
Q ss_pred CC-----ccee---eeCCCCCCeEEEEEc---CCCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 266 PF-----RPLW---DIHPAPKFIYGLDWL---PDPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 266 ~~-----~~~~---~~~~h~~~i~~l~~s---p~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
.. .++. .+. ....|..+... .+..+++..+..|.++-..+..+.... ..|.. ...+..+
T Consensus 76 ~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~-r~G~~--------~i~l~~~ 145 (307)
T 1zi0_A 76 ATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLR-TAGKV--------AIKLVDG 145 (307)
T ss_dssp CCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCC-TTCEE--------SSCCCTT
T ss_pred CCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccc-cCCeE--------EEEECCC
Confidence 32 1111 222 23456555432 356789999999999999886543211 11211 0123333
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
+.+..+........|+..+.+|.+..+....
T Consensus 146 -d~lv~~~~~~~~~~i~l~T~~G~~irf~~~~ 176 (307)
T 1zi0_A 146 -DELIGVDLTSGEDEVMLFSAEGKVVRFKESS 176 (307)
T ss_dssp -CCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred -CEEEEEEEeCCCCEEEEECCCCcEEEEEHHH
Confidence 5555555555556788889999998888753
No 356
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.91 E-value=34 Score=39.35 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=29.5
Q ss_pred EEEEccCCCCcccccCcccEEEEEeCCCcEEEEECCCCceeeEEe
Q 008363 105 DVKWKPYNAVDCKCKQRLGYLAVLLGNGSLEVWEVPLLRTMKAIY 149 (568)
Q Consensus 105 ~v~~sp~~~~~~~~~~~~~~las~s~dg~V~iwd~~~~~~~~~l~ 149 (568)
+++..++. .+|++-+.|+++|||++.+++++.+..
T Consensus 242 s~~~~~~~----------~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 242 SMIFLSTY----------NVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CCEEETTT----------TEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred EeeccCCc----------cEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 56666666 799999999999999999999987753
No 357
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=31.84 E-value=1.6e+02 Score=30.64 Aligned_cols=59 Identities=8% Similarity=0.034 Sum_probs=38.0
Q ss_pred CCeeEEEEccCCCCCCCCcEEEEEcC------------C-CEEEEECCCCCcceeeeCC-CCCCeEEEEEcCCCCEEEEE
Q 008363 230 LPIRAVSWAPAESDSDSANVILTAGH------------G-GLKFWDIRDPFRPLWDIHP-APKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 230 ~~V~~v~~~p~~~~~~~~~~las~s~------------d-~v~lwD~~~~~~~~~~~~~-h~~~i~~l~~sp~~~~l~s~ 295 (568)
.....|+|.++| .+.+.... . .|..++..++ .....+.. ....++.++|+||+++|++.
T Consensus 476 nsPDnL~fd~~G------~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tG-el~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAG------RLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTC------CEEEEECCCCCCSGGGTTCCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCC------CEEEEeCCCcCccccccccCCceEEEEeCCCC-eEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 346789999998 66663321 1 2566666555 32233332 24568999999999998876
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=27.73 E-value=4.4e+02 Score=25.73 Aligned_cols=124 Identities=10% Similarity=0.003 Sum_probs=68.0
Q ss_pred CCeeEEEEc---cCCCCCCCCcEEEEEcCCC-EEEEECCCCCcceeeeC--------------CC----CCCeEEEEEcC
Q 008363 230 LPIRAVSWA---PAESDSDSANVILTAGHGG-LKFWDIRDPFRPLWDIH--------------PA----PKFIYGLDWLP 287 (568)
Q Consensus 230 ~~V~~v~~~---p~~~~~~~~~~las~s~d~-v~lwD~~~~~~~~~~~~--------------~h----~~~i~~l~~sp 287 (568)
+.+..|++. |.+ +......+++=+.+. |.++|+.++. ..+.++ +. ...|..|+++|
T Consensus 152 S~l~di~VD~~~~~~-~c~~~~aYItD~~~~gLIVydl~~~~-swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp 229 (381)
T 3q6k_A 152 TYFGGFAVDVANPKG-DCSETFVYITNFLRGALFIYDHKKQD-SWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGD 229 (381)
T ss_dssp GGEEEEEEEESCTTT-TSCSEEEEEEETTTTEEEEEETTTTE-EEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECC
T ss_pred CccceEEEecccCCC-CCCccEEEEEcCCCCcEEEEECCCCc-EEEEccCCCccccCcceEECCEEeEeccCceEEEecC
Confidence 457788887 220 001112333333344 9999999763 222221 11 24688999999
Q ss_pred C----CCEEEEEeCCC-cEEEEEccccccCCCCCCCCccCccccceEEEecCC---CCEEEEEEe-cCCCEEEEEeCCCe
Q 008363 288 D----PGCVILSFDDG-AMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCSS---FAIWSVQVS-RLTGMVAYCSADGT 358 (568)
Q Consensus 288 ~----~~~l~s~~~dg-~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h~---~~V~~l~~s-p~~~~l~s~s~Dg~ 358 (568)
+ ++.|+-....+ .++--..+.+... ... ..+..+ +.. ..-..+++. .+|.++++--....
T Consensus 230 ~~~~~~~~LYf~plss~~ly~V~T~~L~~~--~~~--------~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 230 RDSEGNRPAYYLAGSAIKVYSVNTKELKQK--GGK--------LNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CCTTSCCEEEEEESSCSEEEEEEHHHHSST--TCC--------CCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred CcCCCCeEEEEEECCCCcEEEEEHHHhhCc--chh--------hceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 8 78888776544 3443332222211 011 122222 222 233456675 56777777778899
Q ss_pred EEEEEcCC
Q 008363 359 VHRFQLTA 366 (568)
Q Consensus 359 v~iwd~~~ 366 (568)
|..|+..+
T Consensus 299 I~~w~~~~ 306 (381)
T 3q6k_A 299 VSCWNTQK 306 (381)
T ss_dssp EEEEETTS
T ss_pred EEEEeCCC
Confidence 99999875
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=26.69 E-value=1.9e+02 Score=30.23 Aligned_cols=58 Identities=10% Similarity=0.111 Sum_probs=37.2
Q ss_pred CeeEEEEccCCCCCCCCcEEEEEcCC------------C-EEEEECCCCCcceeeeC-CCCCCeEEEEEcCCCCEEEEE
Q 008363 231 PIRAVSWAPAESDSDSANVILTAGHG------------G-LKFWDIRDPFRPLWDIH-PAPKFIYGLDWLPDPGCVILS 295 (568)
Q Consensus 231 ~V~~v~~~p~~~~~~~~~~las~s~d------------~-v~lwD~~~~~~~~~~~~-~h~~~i~~l~~sp~~~~l~s~ 295 (568)
..-.|+|+|.| .+++....+ . +.+.+..++ .....+. .....++.++|+||+++|++.
T Consensus 477 ~PDNL~fd~~G------~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAG------RLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTC------CEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCC------CEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 35679999998 676665322 2 444455544 3223333 335678999999999988775
No 360
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=25.55 E-value=4.5e+02 Score=25.17 Aligned_cols=101 Identities=13% Similarity=0.026 Sum_probs=49.6
Q ss_pred CEEEEEeCCCeEEEEEccCCCCCCCCceeEEeeCCCCCeeEEEEcc--CCCCCCCCcEEEEEcCC--CEEEEECCCCC--
Q 008363 194 DYLLAGCHDGTVALWKFVASDSSIDSRPLLCFSADTLPIRAVSWAP--AESDSDSANVILTAGHG--GLKFWDIRDPF-- 267 (568)
Q Consensus 194 ~~l~sgs~Dg~I~iwd~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p--~~~~~~~~~~las~s~d--~v~lwD~~~~~-- 267 (568)
..|.+|+..| +.+++...... ........ .....|.+|++.| .+ .+++.+..+ +..||-.....
T Consensus 23 g~l~vgt~~G-l~~~~~~~~g~--~W~~~~~~-~~~~~v~~i~~dp~~~~------~l~~g~~~g~~g~gl~~s~D~G~t 92 (394)
T 3b7f_A 23 VMLLVATIKG-AWFLASDPARR--TWELRGPV-FLGHTIHHIVQDPREPE------RMLMAARTGHLGPTVFRSDDGGGN 92 (394)
T ss_dssp CEEEEEETTE-EEEEEECTTSC--SEEEEEEE-STTSEEEEEEECSSSTT------CEEEEEEC--CCEEEEEESSTTSC
T ss_pred CEEEEEecCc-eEEEECCCCCC--CceECCcc-CCCCceEEEEECCCCCC------eEEEEecCCCCCccEEEeCCCCCC
Confidence 4788888777 55555432100 11222111 2245699999998 44 566666554 12233222221
Q ss_pred -cceee---eCC--------CCCCeEEEEEcCC--CCEEEEEeCCCcEEEE
Q 008363 268 -RPLWD---IHP--------APKFIYGLDWLPD--PGCVILSFDDGAMRIV 304 (568)
Q Consensus 268 -~~~~~---~~~--------h~~~i~~l~~sp~--~~~l~s~~~dg~I~lw 304 (568)
..+.. +.. ....|.+|++.|. ...|++++..+.|...
T Consensus 93 W~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 93 WTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp CEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 11111 111 1124778999872 4567776666655433
No 361
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=23.44 E-value=4.6e+02 Score=24.54 Aligned_cols=160 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCeEEEEEccCCCCCCC---CceeEEeeCCCCCeeEEEEccCCCCCCCCcEEEEEcCCCEEEEECCCCC
Q 008363 191 PPHDYLLAGCHDGTVALWKFVASDSSID---SRPLLCFSADTLPIRAVSWAPAESDSDSANVILTAGHGGLKFWDIRDPF 267 (568)
Q Consensus 191 ~~g~~l~sgs~Dg~I~iwd~~~~~~~~~---~~~~~~~~~h~~~V~~v~~~p~~~~~~~~~~las~s~d~v~lwD~~~~~ 267 (568)
++..++++.+.+|.|+--.+..-..... +.....+..+..-+..+..+... .+++....+.++-.....-.
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~------~ll~~T~~G~~~~~~~~~ip 79 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHD------YLFMISNEGKLYLINAYEIK 79 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTC------EEEEEETTSEEEEEEGGGSC
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCC------EEEEEECCCeEEEEEHHHCC
Q ss_pred cc-----------eeeeCCCCCCeEEEEEcC--CCCEEEEEeCCCcEEEEEccccccCCCCCCCCccCccccceEEEecC
Q 008363 268 RP-----------LWDIHPAPKFIYGLDWLP--DPGCVILSFDDGAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS 334 (568)
Q Consensus 268 ~~-----------~~~~~~h~~~i~~l~~sp--~~~~l~s~~~dg~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h 334 (568)
.. ...+..-..-+..+.... +..+|+..+..|.++-..+..+.... ..|... ..+..
T Consensus 80 ~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r-~~G~~~--------i~L~~- 149 (312)
T 1suu_A 80 DSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK-SRGVIV--------IKLND- 149 (312)
T ss_dssp C-------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC-----CEEC--------BCCCT-
T ss_pred CCCccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC-CCcEEE--------EecCC-
Q ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEEcCC
Q 008363 335 SFAIWSVQVSRLTGMVAYCSADGTVHRFQLTA 366 (568)
Q Consensus 335 ~~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~ 366 (568)
...+..+........|+..+.+|.+..+.+..
T Consensus 150 ~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~e 181 (312)
T 1suu_A 150 KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRD 181 (312)
T ss_dssp TCCEEEEEEECTTCEEEEEETTSEEEEEEGGG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHH
No 362
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=23.02 E-value=1.4e+02 Score=32.18 Aligned_cols=34 Identities=9% Similarity=0.015 Sum_probs=26.9
Q ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEEcCCCeeec
Q 008363 336 FAIWSVQVSRLTGMVAYCSADGTVHRFQLTAKAVEK 371 (568)
Q Consensus 336 ~~V~~l~~sp~~~~l~s~s~Dg~v~iwd~~~~~~~~ 371 (568)
..|.++.+ +..+|++.+.|.++|+|++.++.+..
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~ 255 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQ 255 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEE
Confidence 34555554 47899999999999999999987544
No 363
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=21.34 E-value=2.3e+02 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=34.8
Q ss_pred eEEEEEcCCCCEEEEEeCC----------CcEEEEEccccccCCCCCCCCccCccccceEEEecC-CCCEEEEEEecCCC
Q 008363 280 IYGLDWLPDPGCVILSFDD----------GAMRIVSLLKAAYDVPATGKPFAGTKQQGLHLVNCS-SFAIWSVQVSRLTG 348 (568)
Q Consensus 280 i~~l~~sp~~~~l~s~~~d----------g~I~lwd~~~~~~~~~~~g~~~~~~~~~~l~~~~~h-~~~V~~l~~sp~~~ 348 (568)
.-.|+|+|.|+++++...+ +.-.+|-.. +.+|+.. +.+.++ ...++.++|+|+++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~------~~~g~~~--------rf~~~P~gaE~TG~~fspDg~ 543 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCAD------PATGEIR--------RFMVGPIGCEVTGISFSPDQK 543 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEEC------TTTCCEE--------EEEECCTTCEEEEEEECTTSS
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEe------CCCCeEE--------EEEeCCCCccCcCeeECCCCC
Confidence 3578999999965554222 111233221 1235442 233333 46799999999987
Q ss_pred EEEEE
Q 008363 349 MVAYC 353 (568)
Q Consensus 349 ~l~s~ 353 (568)
.|+..
T Consensus 544 tlfvn 548 (592)
T 3zwu_A 544 TLFVG 548 (592)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77665
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.88 E-value=7.8e+02 Score=26.22 Aligned_cols=144 Identities=12% Similarity=0.057 Sum_probs=71.9
Q ss_pred CeEEEEEccCCCCCCCCceeEEeeCCCCCe-eEEEEccCCCCCCCC--cEEEEEcCC---C-EEEEECCCCCcceeeeCC
Q 008363 203 GTVALWKFVASDSSIDSRPLLCFSADTLPI-RAVSWAPAESDSDSA--NVILTAGHG---G-LKFWDIRDPFRPLWDIHP 275 (568)
Q Consensus 203 g~I~iwd~~~~~~~~~~~~~~~~~~h~~~V-~~v~~~p~~~~~~~~--~~las~s~d---~-v~lwD~~~~~~~~~~~~~ 275 (568)
.+|+.|.+-+.. ..-...|.+....+ .....++++. .. ..+++.+.+ . +.+.|...+...+..+..
T Consensus 216 ~~v~~~~~Gt~~----~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 288 (711)
T 4hvt_A 216 NSLYIWKRGESI----EKAKKLFEVPKEYIYVSAGKLLSDT---ISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINM 288 (711)
T ss_dssp CEEEEEETTSCG----GGCEEEEECCTTSCEEEEEESSCTT---TCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCS
T ss_pred CEEEEEECCCCh----HHCeEEeccCCCceEEEEEEecCCC---ceEEEEEEEEecccCceeEEEEcCCCCCCcceEeec
Confidence 568888876542 13344555443333 2334455541 00 135554433 3 777777643333333321
Q ss_pred CCCCeEEEEEcCCCCEEEEE----------eCCCcEEEEEccccccCCCCCC---CCccCccccceEE-Eec-CCCCEEE
Q 008363 276 APKFIYGLDWLPDPGCVILS----------FDDGAMRIVSLLKAAYDVPATG---KPFAGTKQQGLHL-VNC-SSFAIWS 340 (568)
Q Consensus 276 h~~~i~~l~~sp~~~~l~s~----------~~dg~I~lwd~~~~~~~~~~~g---~~~~~~~~~~l~~-~~~-h~~~V~~ 340 (568)
... ..+..++++.+++.. ...+.|...|+.... .| . ..... +.. ....+..
T Consensus 289 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~-------~~~~~~~~~~~~~~l~~ 354 (711)
T 4hvt_A 289 PSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLL-----KTESDK-------TSLKILFTPTANEVFNF 354 (711)
T ss_dssp CTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGG-----SCGGGC-------TTCEEEECCCTTEEEEE
T ss_pred CCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCccc-----cccccc-------ccceEEECCCCCCeEEE
Confidence 121 123344566555533 136778889986532 01 0 01122 222 2345778
Q ss_pred EEEecCCCEEEEEeCCCe--EEEEEcCCCe
Q 008363 341 VQVSRLTGMVAYCSADGT--VHRFQLTAKA 368 (568)
Q Consensus 341 l~~sp~~~~l~s~s~Dg~--v~iwd~~~~~ 368 (568)
+.|..+ .++++...++. |.++++.++.
T Consensus 355 ~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 355 ISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp EEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred EEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 888765 67777777775 6666665553
Done!