BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008366
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 160/552 (28%), Positives = 258/552 (46%), Gaps = 59/552 (10%)
Query: 23 AAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNE-SPYNITIH 81
+ + + ++V+ + C + + +NG PGPTIR GD+++V ++N+ + IH
Sbjct: 1 SQIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIH 60
Query: 82 WHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLR-ATVHGAF 140
WHGI Q + WADG I+QC I PG ++ Y F + N GT ++H H+ M R A ++G+
Sbjct: 61 WHGILQRGTPWADGTASISQCAINPGETFFYNFTVDN-PGTFFYHGHLGMQRSAGLYGSL 119
Query: 141 IIRPKSGHKYPFPKPDKEVPIVLGEWWNDDI----MDVANR-----GE-----ITGVGP- 185
I+ P G K PF D E+ ++L +WW+ I + ++++ GE + G G
Sbjct: 120 IVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQF 178
Query: 186 --RISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTV 243
I+ + N P L Y V KTY +RI + L F I NH+ V
Sbjct: 179 DCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV 238
Query: 244 VAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTR 303
V D Y P+ T + I G++ VL+ DQ A T
Sbjct: 239 VEADGNYVQPFYTSDIDIYSGESYSVLITTDQ-------NPSENYWVSVGTRARHPNTPP 291
Query: 304 GIVVYDGASTANPIMPA-----LPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMF 358
G+ + + + +P PA++D + F IT G P+ P + + R+F
Sbjct: 292 GLTLLNYLPNSVSKLPTSPPPQTPAWDDFDRSKNFTYRITAAMGSPK---PPVKFNRRIF 348
Query: 359 VTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQ 418
+ Q + + ++N+ S P + L A +N+ ++ N P +
Sbjct: 349 LL------------NTQNVINGYVKWAINDVSLALPPT-PYLGAMKYNLLHAFDQNPPPE 395
Query: 419 P-PVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIA---VESHPMHLH 474
P ++D +T +N+ + + V K V+++LQN ++ E+HP HLH
Sbjct: 396 VFPEDYD-IDTPPTNEKTRI----GNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLH 450
Query: 475 GYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHF 534
G+DF+VL G G ++A +S + NL NP RNT+ + GW IRF A+NPGVW HCH
Sbjct: 451 GHDFWVLGYGDGKFSAEEES-SLNLKNPPLRNTVVIFPYGWTAIRFVADNPGVWAFHCHI 509
Query: 535 DVHLPWGLATTF 546
+ HL G+ F
Sbjct: 510 EPHLHMGMGVVF 521
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 199 bits (507), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 154/536 (28%), Positives = 247/536 (46%), Gaps = 78/536 (14%)
Query: 27 EHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGI 85
E+ V+N TI ++ NG++PGP I GD LI+HV+N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRP 144
Q+ S+ DG +TQCPI PG++ TYKF+ + Q GT W+H+H S+ + G II
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 KSGHKYPFPKPDKEVPIV-LGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPC 203
+ Y D++V ++ L +W ++ + ++ + + G P + + +NG + + C
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL-GAPPALENTL-MNGT--NTFDC 238
Query: 204 SEN---------QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPY 254
S + + ++L +G Y LR+IN +++ F I NH TV+A D PY
Sbjct: 239 SASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPY 298
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTA 314
TD ++I GQ DV+++A+ + A + T GI+ YD +S A
Sbjct: 299 TTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANAT---GILRYDSSSIA 355
Query: 315 NPIMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATC 374
NP + TP G + P V G L ++
Sbjct: 356 NPT-----SVGTTP------------RGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAF 398
Query: 375 QGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDM 434
F+ +++S + +PT+L I F N+
Sbjct: 399 TNYFTWTINSSSLLLDWSSPTTLKI---------------FNNE---------------- 427
Query: 435 SLLFPPKTTSVKMLKFNSTVE---MVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNAS 491
+FP + V + + N+ E V+++ + HP+HLHG+DF+++AQ +N+
Sbjct: 428 -TIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSD 485
Query: 492 RDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 547
FNLVNP RR+ A+P G+ I F+ +NPG W +HCH H GLA F+
Sbjct: 486 ESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGLAMQFV 541
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 153/536 (28%), Positives = 247/536 (46%), Gaps = 78/536 (14%)
Query: 27 EHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGI 85
E+ V+N TI ++ NG++PGP I GD LI+HV+N +N T IHWHGI
Sbjct: 69 EYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGI 128
Query: 86 FQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRP 144
Q+ S+ DG +TQCPI PG++ TYKF+ + Q GT W+H+H S+ + G II
Sbjct: 129 RQLGSLEYDGVPGVTQCPIAPGDTLTYKFQ-VTQYGTTWYHSHFSLQYGDGLFGPLIING 187
Query: 145 KSGHKYPFPKPDKEVPIV-LGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPC 203
+ Y D++V ++ L +W ++ + ++ + + G P + + +NG + + C
Sbjct: 188 PATADY-----DEDVGVIFLQDWAHESVFEIWDTARL-GAPPALENTL-MNGT--NTFDC 238
Query: 204 SEN---------QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPY 254
S + + ++L +G Y LR+IN +++ F I NH TV+A D PY
Sbjct: 239 SASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPY 298
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTA 314
TD ++I GQ DV+++A+ + A + T GI+ YD +S A
Sbjct: 299 TTDTLLIGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANAT---GILRYDSSSIA 355
Query: 315 NPIMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATC 374
NP + TP G + P V G L ++
Sbjct: 356 NPT-----SVGTTP------------RGTCEDEPVASLVPHLALDVGGYSLVDEQVSSAF 398
Query: 375 QGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDM 434
F+ +++S + +PT+L I F N+
Sbjct: 399 TNYFTWTINSSSLLLDWSSPTTLKI---------------FNNE---------------- 427
Query: 435 SLLFPPKTTSVKMLKFNSTVE---MVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNAS 491
+FP + V + + N+ E V+++ + HP+HLHG+DF+++AQ +N+
Sbjct: 428 -TIFPTEYNVVALEQTNANEEWVVYVIEDLTGFGIW-HPIHLHGHDFFIVAQETDVFNSD 485
Query: 492 RDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 547
FNLVNP RR+ A+P G+ I F+ +NPG W +HCH H G+A F+
Sbjct: 486 ESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDNPGSWLLHCHIAWHASEGMAMQFV 541
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 149/530 (28%), Positives = 214/530 (40%), Gaps = 91/530 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT- 79
V +LTI RQ + VN P P I +GD +I +++N + T
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISM-----LRA 134
IHWHG FQ + WADGP + QCPI G+++ Y F++ +Q GT W+H+H+S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTIN 194
+ + P+ HK + D I L +W+ + G +DA IN
Sbjct: 123 PI---VVYDPQDPHKSLYDVDDDSTVITLADWY--------HLAAKVGSPVPTADATLIN 171
Query: 195 GMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPY 254
G+ G + V KGK Y R+++ + + F I H TV+ D+ P
Sbjct: 172 GL-GRSIDTLNADLAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQ 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTA 314
D + I Q +L ADQ VG+ FD I+ YDGA+
Sbjct: 231 TVDSIQIFAAQRYSFVLNADQDVGNYWIRALPNSGTRN----FDGGVNSAILRYDGAAPV 286
Query: 315 NPIMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATC 374
P P+ N P + + + G + P P VD + + G
Sbjct: 287 EPTTSQTPSTN--PLVESALTTLEGTAA--PGSPAPGGVDLALNMAFGF----------A 332
Query: 375 QGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDM 434
G F ++N SF PT +LQ + +
Sbjct: 333 GGKF------TINGASFTPPTVPVLLQIL------------------------SGAQSAQ 362
Query: 435 SLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDS 494
LL + SV L N+ +E+ L TA HP HLHG+ F V+ S S
Sbjct: 363 DLL---PSGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVV--------RSAGS 411
Query: 495 KNFNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
+N NP R+ ++ G V IRFR +NPG WF+HCH D HL G A
Sbjct: 412 STYNYENPVYRDVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/506 (28%), Positives = 220/506 (43%), Gaps = 75/506 (14%)
Query: 49 VNGSLPGPTIRVQEGDTLIVHVSNE--SPYNI---TIHWHGIFQIRSIWADGPNMITQCP 103
VNG + GP IR + D ++V N+ +P + +IHWHG+FQ + WADG + + QCP
Sbjct: 28 VNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCP 86
Query: 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSG-HKYPFPKPDKEVPI 161
I PG+++ YKF GT W+H+H + G +I + H + + D+ I
Sbjct: 87 ISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTII 146
Query: 162 VLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLL 221
L +W++ + G DA ING G + + VE+GK Y +
Sbjct: 147 TLADWYHIPAPSIQ--------GAAQPDATLINGK-GRYVGGPAAELSIVNVEQGKKYRM 197
Query: 222 RIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXX 281
R+I+ + + F I H+ T++ VD T+P+ D + I GQ +L A+QPV +
Sbjct: 198 RLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYW 257
Query: 282 XXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNITGLS 341
F N I+ Y GA+ A+P A P A ++ I +
Sbjct: 258 IRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNPAQLNEA-DLHALIDPAA 316
Query: 342 GGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQ 401
G +P P D + +G G F ++N ++++P+ ++LQ
Sbjct: 317 PG---IPTPGAADVNLRFQLGF----------SGGRF------TINGTAYESPSVPTLLQ 357
Query: 402 AYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNT 461
+ +ND L P SV L N VE+V+
Sbjct: 358 I----------------------MSGAQSAND---LLP--AGSVYELPRNQVVELVVPAG 390
Query: 462 ALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAV-IRF 520
L HP HLHG+ F V+ S S +N VNP +R+ +++ + G V IRF
Sbjct: 391 VLGG--PHPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRF 440
Query: 521 RANNPGVWFMHCHFDVHLPWGLATTF 546
+NPG WF HCH + HL GLA F
Sbjct: 441 VTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 143/506 (28%), Positives = 220/506 (43%), Gaps = 75/506 (14%)
Query: 49 VNGSLPGPTIRVQEGDTLIVHVSNE--SPYNI---TIHWHGIFQIRSIWADGPNMITQCP 103
VNG + GP IR + D ++V N+ +P + +IHWHG+FQ + WADG + + QCP
Sbjct: 28 VNG-VHGPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQCP 86
Query: 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSG-HKYPFPKPDKEVPI 161
I PG+++ YKF GT W+H+H + G +I + H + + D+ I
Sbjct: 87 ISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTII 146
Query: 162 VLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLL 221
L +W++ + G DA ING G + + VE+GK Y +
Sbjct: 147 TLADWYHIPAPSIQ--------GAAQPDATLINGK-GRYVGGPAAELSIVNVEQGKKYRM 197
Query: 222 RIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSXX 281
R+I+ + + F I H+ T++ VD T+P+ D + I GQ +L A+QPV +
Sbjct: 198 RLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYW 257
Query: 282 XXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNITGLS 341
F N I+ Y GA+ A+P A P A ++ I +
Sbjct: 258 IRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNPAQLNEA-DLHALIDPAA 316
Query: 342 GGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQ 401
G +P P D + +G G F ++N ++++P+ ++LQ
Sbjct: 317 PG---IPTPGAADVNLRFQLGF----------SGGRF------TINGTAYESPSVPTLLQ 357
Query: 402 AYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNT 461
+ +ND L P SV L N VE+V+
Sbjct: 358 I----------------------MSGAQSAND---LLP--AGSVYELPRNQVVELVVPAG 390
Query: 462 ALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAV-IRF 520
L HP HLHG+ F V+ S S +N VNP +R+ +++ + G V IRF
Sbjct: 391 VLGG--PHPFHLHGHAFSVV--------RSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRF 440
Query: 521 RANNPGVWFMHCHFDVHLPWGLATTF 546
+NPG WF HCH + HL GLA F
Sbjct: 441 VTDNPGPWFFHCHIEFHLMNGLAIVF 466
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 150/512 (29%), Positives = 216/512 (42%), Gaps = 85/512 (16%)
Query: 49 VNGSLPGPTIRVQEGDTLIVHV----SNESPYNIT-IHWHGIFQIRSIWADGPNMITQCP 103
VNG P P I ++GD ++V +N + T IHWHG FQ + WADGP + QCP
Sbjct: 27 VNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFFQAGTNWADGPAFVNQCP 86
Query: 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPI 161
I G+S+ Y F + +Q GT W+H+H+S + G F++ PK H + ++ I
Sbjct: 87 IASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPKDPHASRYDVDNESTVI 146
Query: 162 VLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTYKLKVEKGKT 218
L +W++ A R +GPR +DA ING+ G + V+ GK
Sbjct: 147 TLTDWYH-----TAAR-----LGPRFPLGADATLINGL-GRSASTPTAALAVINVQHGKR 195
Query: 219 YLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVG 278
Y R+++ + + F I H TV+ VD + P + D + I Q +L A+Q VG
Sbjct: 196 YRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQIFAAQRYSFVLNANQTVG 255
Query: 279 SXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNIT 338
+ V F I+ Y GA A P T +N+
Sbjct: 256 NYWIRANPNFGT----VGFAGGINSAILRYQGAPVAEPTT-----TQTTSVIPLIETNLH 306
Query: 339 GLSGGP-QWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSL 397
L+ P P P VD+ + + N T + +NN SF PT
Sbjct: 307 PLARMPVPGSPTPGGVDKALNLAFNF-------NGT---------NFFINNASFTPPTVP 350
Query: 398 SILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMV 457
+LQ + + D L P SV L +ST+E+
Sbjct: 351 VLLQI----------------------LSGAQTAQD---LLP--AGSVYPLPAHSTIEIT 383
Query: 458 LQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIA--VPIGGW 515
L TAL HP HLHG+ F V+ S S +N +P R+ ++ P G
Sbjct: 384 LPATALAPGAPHPFHLHGHAFAVV--------RSAGSTTYNYNDPIFRDVVSTGTPAAGD 435
Query: 516 AV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 546
V IRF+ +NPG WF+HCH D HL G A F
Sbjct: 436 NVTIRFQTDNPGPWFLHCHIDFHLEAGFAIVF 467
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 219/512 (42%), Gaps = 93/512 (18%)
Query: 49 VNGSLPGPTIRVQEGDTLIVHVSNESPYNI-----TIHWHGIFQIRSIWADGPNMITQCP 103
VNG P P I +GD ++V ++ + +IHWHG FQ + WADGP + QCP
Sbjct: 27 VNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWHGFFQQGTNWADGPAFVNQCP 86
Query: 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPI 161
I G+S+ Y F++ +Q GT W+H+H+S + G F++ P H + + + I
Sbjct: 87 IASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASLYDIDNDDTVI 146
Query: 162 VLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTYKLKVEKGKT 218
L +W++ VA + +GPR SD+ ING+ G + + +KV +GK
Sbjct: 147 TLADWYH-----VAAK-----LGPRFPFGSDSTLINGL-GRTTGIAPSDLAVIKVTQGKR 195
Query: 219 YLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVG 278
Y R+++ + + F I NH T++ D+ T P D + I Q +L A QPV
Sbjct: 196 YRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDSIQIFAAQRYSFVLDASQPVD 255
Query: 279 SXXXXXXXXXXXXXTIVAFDNTTTRG-----IVVYDGASTANPIMPALPAYNDTPTAYTF 333
+ AF NT G I+ YDGA P + TPT
Sbjct: 256 NYWIRANP---------AFGNTGFAGGINSAILRYDGAPEIEPT-----SVQTTPTKPLN 301
Query: 334 YSNITGLSGGP-QWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQ 392
++ LS P P P VD+ + + N T + +N+H+F
Sbjct: 302 EVDLHPLSPMPVPGSPEPGGVDKPLNLVFNF-------NGT---------NFFINDHTFV 345
Query: 393 APTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNS 452
P+ +LQ + + D+ SV +L NS
Sbjct: 346 PPSVPVLLQI----------------------LSGAQAAQDLV-----PEGSVFVLPSNS 378
Query: 453 TVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPI 512
++E+ TA HP HLHG+ F V+ S S +N NP R+ ++
Sbjct: 379 SIEISFPATANAPGFPHPFHLHGHAFAVV--------RSAGSSVYNYDNPIFRDVVSTGQ 430
Query: 513 GGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
G V IRF NNPG WF+HCH D HL G A
Sbjct: 431 PGDNVTIRFETNNPGPWFLHCHIDFHLDAGFA 462
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/530 (27%), Positives = 212/530 (40%), Gaps = 91/530 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT- 79
V +LTI RQ + VN P P I +GD +I +++N + T
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISM-----LRA 134
IHWHG FQ + WADGP + QCPI G+++ Y F++ +Q GT W+H+H+S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTIN 194
+ + P H + D I L +W+ + G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLIN 171
Query: 195 GMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPY 254
G+ G + V KGK Y R+++ + + F I H TV+ D+ P+
Sbjct: 172 GL-GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPH 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTA 314
D + I Q +L ADQ V + F T I+ YDGA+
Sbjct: 231 TVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN----FAGGTNSAILRYDGAAPV 286
Query: 315 NPIMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATC 374
P P+ N P + + + G + P P VD + + G
Sbjct: 287 EPTTSQTPSTN--PLVESALTTLKGTAA--PGSPTPGGVDLALNMAFGF----------A 332
Query: 375 QGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDM 434
G F ++N SF PT +LQ + +
Sbjct: 333 GGNF------TINGASFTPPTVPVLLQIL-------------------------SGAQSA 361
Query: 435 SLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDS 494
+ L P SV L N+ +E+ L TA HP HLHG+ F V+ S S
Sbjct: 362 ADLLP--AGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVV--------RSAGS 411
Query: 495 KNFNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
+N NP R+ ++ G V IRFR +NPG WF+HCH D HL G A
Sbjct: 412 STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 147/530 (27%), Positives = 212/530 (40%), Gaps = 91/530 (17%)
Query: 32 VKNLTIGR-------LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT- 79
V +LTI RQ + VN P P I +GD +I +++N + T
Sbjct: 5 VADLTISNGAVSPDGFSRQAIL--VNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTS 62
Query: 80 IHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISM-----LRA 134
IHWHG FQ + WADGP + QCPI G+++ Y F++ +Q GT W+H+H+S LR
Sbjct: 63 IHWHGFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRG 122
Query: 135 TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTIN 194
+ + P H + D I L +W+ + G +DA IN
Sbjct: 123 PI---VVYDPNDPHASLYDVDDDSTVITLADWY--------HLAAKVGAPVPTADATLIN 171
Query: 195 GMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPY 254
G+ G + V KGK Y R+++ + + F I H TV+ D+ P+
Sbjct: 172 GL-GRSAATLAADLAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPH 230
Query: 255 VTDVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTA 314
D + I Q +L ADQ V + F T I+ YDGA+
Sbjct: 231 TVDSLQIFAAQRYSFVLNADQDVDNYWIRALPNSGTQN----FAGGTNSAILRYDGAAPV 286
Query: 315 NPIMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATC 374
P P+ N P + + + G + P P VD + + G
Sbjct: 287 EPTTSQTPSTN--PLVESALTTLKGTAA--PGSPTPGGVDLALNMAFGF----------A 332
Query: 375 QGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDM 434
G F ++N SF PT +LQ + +
Sbjct: 333 GGNF------TINGASFTPPTVPVLLQIL-------------------------SGAQSA 361
Query: 435 SLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDS 494
+ L P SV L N+ +E+ L TA HP HLHG+ F V+ S S
Sbjct: 362 ADLLP--AGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHVFAVV--------RSAGS 411
Query: 495 KNFNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
+N NP R+ ++ G V IRFR +NPG WF+HCH D HL G A
Sbjct: 412 STYNYANPVYRDVVSTGAPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFA 461
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 143/512 (27%), Positives = 213/512 (41%), Gaps = 82/512 (16%)
Query: 48 AVN--GSLPGPTIRVQEGDTLIVHVSNE-----SPYNITIHWHGIFQIRSIWADGPNMIT 100
AVN G+ PGP I GD + N+ + +IHWHG FQ + WADGP IT
Sbjct: 25 AVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFIT 84
Query: 101 QCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKE 158
QCPI GNS++Y F + GT W+H+H++ + G F++ P + D
Sbjct: 85 QCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDT 144
Query: 159 VPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKT 218
I L +W++ ++ G IT +D+ I+G+ + + VE GK
Sbjct: 145 TIITLADWYHVLAKEMGAGGAIT------ADSTLIDGLGRTHVNVAAVPLSVITVEVGKR 198
Query: 219 YLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVG 278
Y +R+++ + + F I H T++ D + D + I Q +L A+QPVG
Sbjct: 199 YRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYSFVLNANQPVG 258
Query: 279 SXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNIT 338
+ FD I+ YDGA+TA+P+ A T +T
Sbjct: 259 NYWIRANPNSGGE----GFDGGINSAILRYDGATTADPVTVA-------STVHT------ 301
Query: 339 GLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSAS---MNNHSFQAPT 395
C D G+ A C S + +N SF PT
Sbjct: 302 ---------KCLIETDLHPLSRNGVPGNPHQGGADCNLNLSLGFACGNFVINGVSFTPPT 352
Query: 396 SLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVE 455
+LQ + +N + L P + SV L NST+E
Sbjct: 353 VPVLLQI-------------------------CSGANTAADLLP--SGSVISLPSNSTIE 385
Query: 456 MVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAV-PIGG 514
+ L A A HP HLHG+DF V + +AS + N++ +P R+ +++ +G
Sbjct: 386 IALPAGA--AGGPHPFHLHGHDFAV------SESASNSTSNYD--DPIWRDVVSIGGVGD 435
Query: 515 WAVIRFRANNPGVWFMHCHFDVHLPWGLATTF 546
IRF +NPG WF+HCH D HL G A F
Sbjct: 436 NVTIRFCTDNPGPWFLHCHIDWHLDAGFAIVF 467
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 144/514 (28%), Positives = 210/514 (40%), Gaps = 84/514 (16%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDT----LIVHVSNESPYNIT-IHWHGIFQIRSIWADGPN 97
++ VN P P I GD L+ ++N + T IHWHG FQ + WADGP
Sbjct: 21 ERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWHGFFQKGTNWADGPA 80
Query: 98 MITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKP 155
I QCPI GNS+ Y F++ Q GT W+H+H+S + G F++ P H +
Sbjct: 81 FINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHANLYDVD 140
Query: 156 DKEVPIVLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTYKLK 212
D+ I L +W++ VA + +GPR +D+ ING+ G +
Sbjct: 141 DESTVITLADWYH-----VAAK-----LGPRFPKGADSTLINGL-GRSTSTPTADLAVIS 189
Query: 213 VEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLK 272
V KGK Y R+++ + + F I +H+ TV+ D T P D + I Q +L
Sbjct: 190 VTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDSIQIFAAQRYSFVLN 249
Query: 273 ADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYT 332
A+Q V + F + I+ YD A P P N T T
Sbjct: 250 ANQDVDNYWIRANPNFGT----TGFADGVNSAILRYDDAD------PVEPVTNQTGTTLL 299
Query: 333 FYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQ 392
+++ L+ P P N T QG L+ + N
Sbjct: 300 LETDLHPLTSMP-----------------------VPGNPT-QGGADLNLNMAFN----- 330
Query: 393 APTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNS 452
FF G + P P P + + N + D L P + SV L NS
Sbjct: 331 ------FDGTNFFINGESFTP--PTVPVLLQIISGANTAQD---LLP--SGSVYSLPSNS 377
Query: 453 TVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAV-- 510
++E+ T HP HLHG+ F V+ S S ++N +P R+ ++
Sbjct: 378 SIEITFPATTAAPGAPHPFHLHGHVFAVV--------RSAGSTSYNYDDPVWRDVVSTGT 429
Query: 511 -PIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLA 543
G IRF+ +NPG WF+HCH D HL G A
Sbjct: 430 PQAGDNVTIRFQTDNPGPWFLHCHIDFHLDAGFA 463
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 131/471 (27%), Positives = 192/471 (40%), Gaps = 69/471 (14%)
Query: 79 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VH 137
+IHWHG FQ + DGP + QCPI P S+ Y F + Q GT W+H+H+S +
Sbjct: 83 SIHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLR 142
Query: 138 GAFII-RPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGM 196
GAF++ P H + D I + +W++ + D ING+
Sbjct: 143 GAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVLFPNPNKAP---PAPDTTLINGL 199
Query: 197 PGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVT 256
+ S Q + V+ GK Y RI++ + F I H+ TV+ VD P
Sbjct: 200 GRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPLTV 259
Query: 257 DVVVIAPGQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
D + I GQ V+++A+Q VG+ F I Y GA+ A P
Sbjct: 260 DSLTIFAGQRYSVVVEANQAVGNYWIRANPSNGRN----GFTGGINSAIFRYQGAAVAEP 315
Query: 317 IMPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQG 376
++ TA + I ++ G P P D + + +G NAT
Sbjct: 316 T-----TSQNSGTALNEANLIPLINPGAPGNPVPGGADINLNLRIG-------RNATTA- 362
Query: 377 PFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSL 436
++N F PT +LQ + GV PN
Sbjct: 363 ------DFTINGAPFIPPTVPVLLQI----LSGVTNPND--------------------- 391
Query: 437 LFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKN 496
L P +V L N +E+ + +HP HLHG++F V+ + S
Sbjct: 392 LLP--GGAVISLPANQVIEISIPGGG-----NHPFHLHGHNFDVV--------RTPGSSV 436
Query: 497 FNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 546
+N VNP RR+ +++ GG V RF +NPG WF+HCH D HL GLA F
Sbjct: 437 YNYVNPVRRDVVSIGGGGDNVTFRFVTDNPGPWFLHCHIDWHLEAGLAVVF 487
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 40 LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT-IHWHGIFQIRSIWAD 94
RQ + VNG PGP + GD +I +++N + T IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPF 152
GP I QCPI PG+S+ Y F++ +Q GT W+H+H+S + G F++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTY 209
+ + I L +W++ +GPR +DA ING G S +
Sbjct: 138 DVDNDDTVITLADWYH----------TAAKLGPRFPGGADATLINGK-GRAPSDSVAELS 186
Query: 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDV 269
+KV KGK Y R+++ + N F I H T++ VD+ + P D + I Q
Sbjct: 187 VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSF 246
Query: 270 LLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
+L A+Q V + V FD I+ YDGA P
Sbjct: 247 VLDANQAVDNYWIRANPNFGN----VGFDGGINSAILRYDGAPAVEP 289
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQ 503
SV +L N+++E+ TA HP HLHG+ F V+ S S +N NP
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYDNPI 421
Query: 504 RRNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
R+ ++ P G V IRF NNPG WF+HCH D HL G A
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 132/287 (45%), Gaps = 27/287 (9%)
Query: 40 LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT-IHWHGIFQIRSIWAD 94
RQ + VNG PGP + GD +I +++N + T IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWAD 77
Query: 95 GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPF 152
GP I QCPI PG+S+ Y F++ +Q GT W+H+H+S + G F++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTY 209
+ + I L +W++ +GPR +DA ING G S +
Sbjct: 138 DVDNDDTVITLADWYH----------TAAKLGPRFPGGADATLINGK-GRAPSDSVAELS 186
Query: 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDV 269
+KV KGK Y R+++ + N F I H T++ VD+ + P D + I Q
Sbjct: 187 VIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDSIQIFAAQRYSF 246
Query: 270 LLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
+L A+Q V + V FD I+ YDGA P
Sbjct: 247 VLDANQAVDNYWIRANPNFGN----VGFDGGINSAILRYDGAPAVEP 289
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQ 503
SV +L N+++E+ TA HP HLHG+ F V+ S S +N NP
Sbjct: 370 SVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYDNPI 421
Query: 504 RRNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
R+ ++ P G V IRF NNPG WF+HCH D HL G A
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFDTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 131/287 (45%), Gaps = 27/287 (9%)
Query: 40 LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT-IHWHGIFQIRSIWAD 94
RQ + VNG PGP + GD +I +++N + T +HWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWAD 77
Query: 95 GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPF 152
GP I QCPI PG+S+ Y F++ NQ GT W+H+H+S + G F++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRI---SDAFTINGMPGDLYPCSENQTY 209
+ + I L +W++ +GPR +DA ING G + +
Sbjct: 138 DVDNDDTVITLADWYH----------TAAKLGPRFPAGADATLINGK-GRAPSDTSAELS 186
Query: 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDV 269
+KV KGK R+++ + + F I H T++ VD+ + P D + I Q
Sbjct: 187 VIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDSIQIFAAQRYSF 246
Query: 270 LLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
+L A+Q V + V F+ I+ YDGA P
Sbjct: 247 VLNANQAVDNYWIRANPNFGN----VGFNGGINSAILRYDGAPAVEP 289
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQ 503
SV +L N+++E+ TA HP HLHG+ F V+ S S +N NP
Sbjct: 370 SVXVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVR--------SAGSTVYNYSNPI 421
Query: 504 RRNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
R+ ++ P G V IRF NNPG WF+HCH D HL G A
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 128/284 (45%), Gaps = 21/284 (7%)
Query: 40 LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT-IHWHGIFQIRSIWAD 94
RQ + VNG PGP + GD +I +++N + T +HWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWHGFFQQGTNWAD 77
Query: 95 GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPF 152
GP I QCPI PG+S+ Y F++ NQ GT W+H+H+S + G F++ P H +
Sbjct: 78 GPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRY 137
Query: 153 PKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLK 212
+ + I L +W++ ++ P +D+ ING G S Q +
Sbjct: 138 DVDNDDTTITLADWYH-------TAAKLGPAFPNGADSTLINGK-GRAPSDSSAQLSVVS 189
Query: 213 VEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLK 272
V KGK R+++ + + F I H T++ D+ + P TD + I Q L
Sbjct: 190 VTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDSIQIFAAQRYSFTLN 249
Query: 273 ADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
A+Q V + V F+ I+ YDGA P
Sbjct: 250 ANQAVDNYWIRANPNFGN----VGFNGGINSAILRYDGAPAVEP 289
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQ 503
SV L N+++E+ TA HP HLHG+ F V+ S S +N NP
Sbjct: 370 SVXTLPSNASIEISFPATAAAPGAPHPFHLHGHVFAVVR--------SAGSTVYNYSNPI 421
Query: 504 RRNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLA 543
R+ ++ P G V IRF NNPG WF+HCH D HL G A
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFLTNNPGPWFLHCHIDFHLEGGFA 464
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 129/284 (45%), Gaps = 21/284 (7%)
Query: 40 LCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNIT-IHWHGIFQIRSIWAD 94
RQ + VNG PGP I GD +I +++N + T IHWHG FQ + WAD
Sbjct: 20 FSRQAVV--VNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQKGTNWAD 77
Query: 95 GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPF 152
GP I QCPI G+S+ Y F++ +Q GT W+H+H+S + G F++ P +
Sbjct: 78 GPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPAADLY 137
Query: 153 PKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLK 212
+ + I L +W++ VA ++ P +DA ING G + +
Sbjct: 138 DVDNDDTVITLVDWYH-----VA--AKLGPAFPLGADATLINGK-GRSPSTTTADLSVIS 189
Query: 213 VEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLK 272
V GK Y R+++ + + F I H T++ D+ T P V D + I Q +L+
Sbjct: 190 VTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDSIQIFAAQRYSFVLE 249
Query: 273 ADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
A+Q V + V F I+ YDGA+ P
Sbjct: 250 ANQAVDNYWIRANPNFGN----VGFTGGINSAILRYDGAAAVEP 289
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQ 503
SV L N+ +E+ TA HP HLHG+ F V+ S S +N NP
Sbjct: 370 SVYSLPSNADIEISFPATAAAPGAPHPFHLHGHAFAVVR--------SAGSTVYNYDNPI 421
Query: 504 RRNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 546
R+ ++ P G V IRFR +NPG WF+HCH D HL G A F
Sbjct: 422 FRDVVSTGTPAAGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 109/235 (46%), Gaps = 15/235 (6%)
Query: 50 NGSLPGPTIRVQEGDTLIVHVSNESP-----YNITIHWHGIFQIRSIWADGPNMITQCPI 104
NG PGP I +GD ++V + TIHWHG+FQ + WADGP + QCPI
Sbjct: 28 NGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWHGLFQHGTNWADGPAFVNQCPI 87
Query: 105 RPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RPKSGHKYPFPKPDKEVPIV 162
GNS+ Y F + +Q GT W+H+H+S + G ++ P + + D I
Sbjct: 88 ASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVVYDPSDPYASMYDVDDDTTVIT 147
Query: 163 LGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLR 222
L +W++ ++ P +D+ ING+ G + + + VE+ K Y R
Sbjct: 148 LSDWYH-------TAAKLGPAFPPNADSVLINGL-GRFAGGNASDLAVITVEQNKRYRFR 199
Query: 223 IINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPV 277
+++ + + F I H T++ VD +P D + I Q +L A Q V
Sbjct: 200 LVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDSIQIFASQRYSFVLNATQSV 254
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 58/111 (52%), Gaps = 14/111 (12%)
Query: 442 TTSVKMLKFNSTVEMVLQNTALIAVES-----HPMHLHGYDFYVLAQGFGNYNASRDSKN 496
T SV L NST+E+ T + V + HP HLHG+ F V+ S S +
Sbjct: 368 TGSVYTLPLNSTIELSFPITTVNGVTNAPGAPHPFHLHGHAFSVVR--------SAGSSD 419
Query: 497 FNLVNPQRRNTIAVPIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 546
+N VNP RR+T++ G V IRF +N G WF+HCH D HL G A F
Sbjct: 420 YNYVNPVRRDTVSTGNPGDNVTIRFTTDNAGPWFLHCHIDFHLEAGFAIVF 470
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 21/236 (8%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSN-ESPYNITIHWHGIFQIRSIWADGPNMIT 100
+ + + NG P P I V +GD + ++++N + N ++H+HG+FQ + DG +T
Sbjct: 20 KSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLT 79
Query: 101 QCPIRPGNSYTYKFRIINQEGTLWWHAHIS-MLRATVHGAFIIRPKSGHKYPFPKPDKEV 159
QCPI PG++ Y F + GT W+H+H + G FII+ S +P+ D+E+
Sbjct: 80 QCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS---FPYDY-DEEL 135
Query: 160 PIVLGEWWNDDIMDVANR----GEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEK 215
+ L EW++D + D+ TG P + N M N T+ +V+
Sbjct: 136 SLSLSEWYHDLVTDLTKSFMSVYNPTGAEPIPQNLIVNNTM---------NLTW--EVQP 184
Query: 216 GKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLL 271
TYLLRI+N +F I +H+ TVV +D T+ VTD++ I Q VL+
Sbjct: 185 DTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEKNVTDMLYITVAQRYTVLV 240
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 11/103 (10%)
Query: 443 TSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQ------GFGNYNASRDSKN 496
T +L+ + VE+VL N +HP HLHG+ F + + G S D N
Sbjct: 369 THTFILEKDEIVEIVLNNQD---TGTHPFHLHGHAFQTIQRDRTYDDALGEVPHSFDPDN 425
Query: 497 FNLV--NPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVH 537
P RR+T+ V VIRF+A+NPGVWF HCH + H
Sbjct: 426 HPAFPEYPMRRDTLYVRPQSNFVIRFKADNPGVWFFHCHIEWH 468
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 123/293 (41%), Gaps = 21/293 (7%)
Query: 32 VKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-----YNITIHWHGIF 86
V N + + VNG PGP I +GD ++V N + ++HWHG F
Sbjct: 10 VTNAAVAADGHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFF 69
Query: 87 QIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFII-RP 144
Q + WADGP + QCPI G+S+ Y F Q GT W+H+H+S G F++ P
Sbjct: 70 QKGTNWADGPAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDP 129
Query: 145 KSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMP-GDLYPC 203
+ + I L +W++ A G P +DA ING G P
Sbjct: 130 NDPSANLYDVDNLNTVITLTDWYH----TAAQNGP---AKPGGADATLINGQGRGPSSPS 182
Query: 204 SENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAP 263
++ + V GK Y R+++ + + F I H+ T++ VD+ P V + I
Sbjct: 183 AD--LAVISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYA 240
Query: 264 GQTTDVLLKADQPVGSXXXXXXXXXXXXXTIVAFDNTTTRGIVVYDGASTANP 316
Q +L A+Q V + V F N I+ Y GA+ P
Sbjct: 241 AQRYSFILNANQAVNNYWIRANPNQGN----VGFTNGINSAILRYSGAAATQP 289
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 11/105 (10%)
Query: 445 VKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQR 504
V L ++ +E+ T+ A HP HLHG+ F V+ S S +N +P
Sbjct: 371 VYSLPSDANIEISFPATSAAAGGPHPFHLHGHAFAVVR--------SAGSTTYNYNDPIF 422
Query: 505 RNTIAV--PIGGWAV-IRFRANNPGVWFMHCHFDVHLPWGLATTF 546
R+T++ P V IRF+ NNPG WF+HCH D HL G A F
Sbjct: 423 RDTVSTGTPAANDNVTIRFKTNNPGPWFLHCHIDFHLEAGFAVVF 467
>pdb|3G5W|A Chain A, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|B Chain B, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|C Chain C, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|D Chain D, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|E Chain E, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
pdb|3G5W|F Chain F, Crystal Structure Of Blue Copper Oxidase From Nitrosomonas
Europaea
Length = 318
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 29/239 (12%)
Query: 48 AVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPG 107
A NG +P P I V EGD + V+V+N + TIHWHG+ Q + +DG TQ I PG
Sbjct: 26 AFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPG 85
Query: 108 NSYTYKFRIINQEGTLWWHAHISM-----LRATVHGAFIIRPKSGHKYPFPKPD---KEV 159
+++TYKF+ GT+W+H H+++ +R + G I+ PK+ P P K+
Sbjct: 86 DTFTYKFK-AEPAGTMWYHCHVNVNEHVTMRG-MWGPLIVEPKN----PLPIEKTVTKDY 139
Query: 160 PIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTY 219
++L +W + AN+ G+ + D +TIN S +T ++V+KG
Sbjct: 140 ILMLSDW----VSSWANKPGEGGIPGDVFDYYTINAK-------SFPETQPIRVKKGDVI 188
Query: 220 LLRIINAALNNQLFFKIANHKFTVVAVDAGY--TDPYVTDVVVIAPGQTTDVLLKADQP 276
LR+I A + + + + +A G+ P D V+I PG+ DV+L D P
Sbjct: 189 RLRLIGAG--DHVHAIHTHGHISQIAFKDGFPLDKPIKGDTVLIGPGERYDVILNMDNP 245
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 469 HPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVW 528
H +H HG+ + A +D F L P + +T+ + G + +NPG+W
Sbjct: 200 HAIHTHGHISQI---------AFKDG--FPLDKPIKGDTVLIGPGERYDVILNMDNPGLW 248
Query: 529 FMHCHFDVH 537
+H H D H
Sbjct: 249 MIHDHVDTH 257
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 117/242 (48%), Gaps = 15/242 (6%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGIFQIRSIWADGPNMITQ 101
+ + VN + GPTIR GD + V V N N T +HWHG+ Q+ +++ DG N +T+
Sbjct: 95 KNVVMLVNDKIIGPTIRANWGDNIEVTVINNLKTNGTSMHWHGLRQLGNVFNDGANGVTE 154
Query: 102 CPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYPFPKPDKEV 159
CPI P G TYKFR Q GT W+H+H S V G I + Y D ++
Sbjct: 155 CPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVVGTIQIDGPASLPY-----DIDL 208
Query: 160 PIV-LGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYP-CSENQTYKLKVEKGK 217
+ L +++ ++ + + G P SD NG +P Q Y + + GK
Sbjct: 209 GVFPLMDYYYRSADELVHFTQSNGAPP--SDNVLFNGTA--RHPETGAGQWYNVTLTPGK 264
Query: 218 TYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPV 277
+ LRIIN + +N + H TV+A D + + + +A GQ DV + A+ PV
Sbjct: 265 RHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPVNAFTVSSLFLAVGQRYDVTIDANSPV 324
Query: 278 GS 279
G+
Sbjct: 325 GN 326
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 469 HPMHLHGYDFYVLAQGFGN---------YNASRDSKNFNLVNPQRRNTIAVPIGGWAVIR 519
HPMHLHG+DF VL + ++ ++D NP RR+ +P GGW ++
Sbjct: 472 HPMHLHGHDFLVLGRSPDELPSAGVRHIFDPAKDLPRLKGNNPVRRDVTMLPAGGWLLLA 531
Query: 520 FRANNPGVWFMHCHFDVHLPWGLATTFI 547
F+ +NPG W HCH H+ GL+ F+
Sbjct: 532 FKTDNPGAWLFHCHIAWHVSGGLSVDFL 559
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGIFQIRSIWADGPNMITQ 101
++ + +NG++ GP I GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYP-----FPK 154
CPI P G TY++R Q GT W+H+H S V G I + Y FP
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPI 172
Query: 155 PDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYP-CSENQTYKLKV 213
D DD++ P SD ING + P E Q + +
Sbjct: 173 TDYYYRAA------DDLVHFTQNN-----APPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 214 EKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKA 273
GK + LRI+N + N + NH TV+A D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 274 DQ 275
+
Sbjct: 280 SR 281
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 469 HPMHLHGYDFYVL---------AQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIR 519
HPMHLHG+DF VL +Q ++ + D N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 520 FRANNPGVWFMHCHFDVHLPWGLATTFI 547
FR +NPG W HCH H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGIFQIRSIWADGPNMITQ 101
++ + +NG++ GP I GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTE 113
Query: 102 CPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYP-----FPK 154
CPI P G TY++R Q GT W+H+H S V G I + Y FP
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPI 172
Query: 155 PDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYP-CSENQTYKLKV 213
D DD++ P SD ING + P E Q + +
Sbjct: 173 TDYYYRAA------DDLVHFTQNN-----APPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 214 EKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKA 273
GK + LRI+N + N + NH TV+A D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 274 DQ 275
+
Sbjct: 280 SR 281
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 469 HPMHLHGYDFYVL---------AQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIR 519
HPMHLHG+DF VL +Q ++ + D N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 520 FRANNPGVWFMHCHFDVHLPWGLATTFI 547
FR +NPG W HCH H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 108/242 (44%), Gaps = 23/242 (9%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNIT-IHWHGIFQIRSIWADGPNMITQ 101
++ + +NG++ GP I GDT+ V V N N T IHWHGI Q + DG N +T+
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 102 CPIRP-GNSYTYKFRIINQEGTLWWHAHISMLRAT-VHGAFIIRPKSGHKYP-----FPK 154
CPI P G TY++R Q GT W+H+H S V G I + Y FP
Sbjct: 114 CPIPPKGGQRTYRWRA-RQYGTSWYHSHFSAQYGNGVVGTIQINGPASLPYDIDLGVFPI 172
Query: 155 PDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYP-CSENQTYKLKV 213
D DD++ P SD ING + P E Q + +
Sbjct: 173 TDYYYRAA------DDLVHFTQNN-----APPFSDNVLINGTA--VNPNTGEGQYANVTL 219
Query: 214 EKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKA 273
GK + LRI+N + N + NH TV+A D + D + +A GQ DV++ A
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVIDA 279
Query: 274 DQ 275
+
Sbjct: 280 SR 281
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 9/88 (10%)
Query: 469 HPMHLHGYDFYVL---------AQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIR 519
HPMHLHG+DF VL +Q ++ + D N NP RR+T +P GGW ++
Sbjct: 431 HPMHLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLA 490
Query: 520 FRANNPGVWFMHCHFDVHLPWGLATTFI 547
FR +NPG W HCH H+ GL+ F+
Sbjct: 491 FRTDNPGAWLFHCHIAWHVSGGLSVDFL 518
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 117/240 (48%), Gaps = 30/240 (12%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
++ T+ GS PGPT+RV+ DT+ + + N P +HWHG+ S D P +
Sbjct: 33 QRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL--PISPKVDDPFL--- 87
Query: 102 CPIRPGNSYTYKFRIINQ-EGTLWWHAHIS-----MLRATVHGAFIIRPKSGHKYPFPKP 155
I PG S+TY+F + + GT W+H H+ L A + GA ++ S P +
Sbjct: 88 -EIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVE-SSLDAIPELRE 145
Query: 156 DKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEK 215
+E +VL D+A +G G + +NG GDL + L +K
Sbjct: 146 AEEHLLVL--------KDLALQG---GRPAPHTPMDWMNGKEGDLVLVNGALRPTLVAQK 194
Query: 216 GKTYLLRIINAALNNQLFFKIA--NHKFTVVAVDAGY-TDPYVTDVVVIAPGQTTDVLLK 272
T LR++NA +N ++++A +H ++A D G+ +P +++APG+ +VL++
Sbjct: 195 A-TLRLRLLNA--SNARYYRLALQDHPLYLIAADGGFLEEPLEVSELLLAPGERAEVLVR 251
>pdb|3GDC|A Chain A, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|B Chain B, Crystal Structure Of Multicopper Oxidase
pdb|3GDC|C Chain C, Crystal Structure Of Multicopper Oxidase
Length = 288
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 50/268 (18%)
Query: 31 QVKNLTIGRLCRQQTITAV-----------------NGSLPGPTIRVQEGDTLIVHVSNE 73
+ L GR R+ I AV NG +PGPT+ +EGD L +H +N
Sbjct: 24 RTSTLPDGRTLREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNA 83
Query: 74 SPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLR 133
+ TIH+HG+ + DG I I PG S+TY+F GT +H H S L
Sbjct: 84 GAHPHTIHFHGVHRAT---MDGTPGIGAGSIAPGQSFTYEFD-ATPFGTHLYHCHQSPLA 139
Query: 134 ATV----HGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISD 189
+ +G FI+ PK G P D E+ +V+ + D G ++
Sbjct: 140 PHIAKGLYGGFIVEPKEGR----PPADDEMVMVMNGYNTD--------------GGDDNE 181
Query: 190 AFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQL-FFKIANHKFTVVAVDA 248
+++NG+P + +KV++ + + +IN + + F I + F
Sbjct: 182 FYSVNGLPFHF------MDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGT 235
Query: 249 GYTDPYVTDVVVIAPGQTTDVLLKADQP 276
T TD + GQ + L+ P
Sbjct: 236 MLTPSEYTDTISQVQGQRGILELRFPYP 263
>pdb|3ZX1|A Chain A, Multicopper Oxidase From Campylobacter Jejuni: A
Metallo-Oxidase
Length = 481
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 95/231 (41%), Gaps = 28/231 (12%)
Query: 50 NGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNS 109
NG +P P I V EGD L + V N+ TIHWHG+ + P+ PI G
Sbjct: 76 NGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGV-PVPPDQDGSPH----DPILAGEE 130
Query: 110 YTYKFRI-INQEGTLWWHAH-----ISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVL 163
Y+F I + GT W+H H + + GAF+I+ K KE +++
Sbjct: 131 RIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL----KEKDLMI 186
Query: 164 GEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRI 223
+ D+ + N + R + ING +K K++ +RI
Sbjct: 187 SDLRLDENAQIPNNNLNDWLNGREGEFVLING------------QFKPKIKLATNERIRI 234
Query: 224 INAALNNQLFFKIANHKFTVVAVDAGYTDPYV-TDVVVIAPGQTTDVLLKA 273
NA L +I KF +V D G + + + + ++P +VL+ A
Sbjct: 235 YNATAARYLNLRIQGAKFILVGTDGGLIEKTIYKEELFLSPASRVEVLIDA 285
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 468 SHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGV 527
HP H+HG F +++ N F + R+TI V +R + + G+
Sbjct: 406 DHPFHIHGTQFELISSKL---NGKVQKAEFRAL----RDTINVRPNEELRLRMKQDFKGL 458
Query: 528 WFMHCHFDVHLPWGLATTFIVE 549
HCH H G+ V+
Sbjct: 459 RMYHCHILEHEDLGMMGNLEVK 480
>pdb|3AW5|A Chain A, Structure Of A Multicopper Oxidase From The
Hyperthermophilic Archaeon Pyrobaculum Aerophilum
Length = 448
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 97/232 (41%), Gaps = 26/232 (11%)
Query: 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFR 115
PTI ++ G + + + N+ +HWHG F + W + + I PG SY Y F
Sbjct: 38 PTIILRRGQRVDMTLKNKLTEPTIVHWHG-FDVN--WHNDAH--PSFAITPGESYNYSFD 92
Query: 116 IINQEGTLWWHAHISMLRATV----HGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDI 171
++N+ GT +H H L A +I SG F ++P+V+ +
Sbjct: 93 VVNRAGTYLYHPHPHGLTAKQFYMGQLGLVIVEDSGSDLGFKYGVNDLPLVISDRRFIGG 152
Query: 172 MDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQ 231
V N + + + +A +NG+ ++ +KL G +Y LR++N +
Sbjct: 153 APVYNPTPMEMIAGFLGNAVLVNGV--------KDAVFKL---SGGSYRLRLVNGSNARL 201
Query: 232 LFFKIANHKFTVV-----AVDAGY-TDPYVTDVVVIAPGQTTDVLLKADQPV 277
I VV AVD G+ P + +AP + +V+++ + V
Sbjct: 202 YMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVVVELGEGV 253
>pdb|1KBW|A Chain A, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|B Chain B, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|C Chain C, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|D Chain D, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|E Chain E, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBW|F Chain F, Crystal Structure Of The Soluble Domain Of Ania From
Neisseria Gonorrhoeae
pdb|1KBV|A Chain A, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|B Chain B, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|C Chain C, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|D Chain D, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|E Chain E, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
pdb|1KBV|F Chain F, Nitrite-Soaked Crystal Structure Of The Soluble Domain Of
Ania From Neisseria Gonorrhoeae
Length = 327
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 93/243 (38%), Gaps = 41/243 (16%)
Query: 50 NGSLPGPTIRVQEGDTLIVHVSNES----PYNITIHWHGIFQIRSIWADGPNMITQCPIR 105
+G +PG IRV+EGDT+ V SN P+N+ H +
Sbjct: 64 DGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGA---------AATFTA 114
Query: 106 PGNSYTYKFRIINQEGTLWWHAHIS----MLRATVHGAFIIRPKSGHKYPFPKPDKEVPI 161
PG + T+ F+ + Q G +H ++ + ++G ++ PK G PK DKE I
Sbjct: 115 PGRTSTFSFKAL-QPGLYIYHCAVAPVGMHIANGMYGLILVEPKEG----LPKVDKEFYI 169
Query: 162 VLGEWWNDDIMDVANRGEITGVGPRISDA--------FTINGMPGDLYPCSENQTYKLKV 213
V G+++ + G+ P D NG G L +N LK
Sbjct: 170 VQGDFYT------KGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGAL--TGDNA---LKA 218
Query: 214 EKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKA 273
+ G+T + + N N F + F V V+ G ++ G + V K
Sbjct: 219 KAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKV 278
Query: 274 DQP 276
D P
Sbjct: 279 DIP 281
>pdb|4GXF|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GXF|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 279
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI-FQIRSIWADGPNMITQCPIRPGNSY 110
S+PGP I V EGDTL + +N ++H HG+ F+I S DG M + + PG +
Sbjct: 36 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDFEISS---DGTAM-NKSDVEPGGTR 91
Query: 111 TYKFRI----INQEGTL------WWHAHISMLRATVHGAFIIR 143
TY +R +GT +WH H ++ T HG IR
Sbjct: 92 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 133
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 424 DYTNTNVSNDMSLL-FPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLA 482
D T+T V NDM++ P T VE+V+ H H+HG+ +
Sbjct: 151 DATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEY---YHTFHMHGHRW---- 203
Query: 483 QGFGNYNASRDSKNFNLVNPQR-----RNTIAVPIG--GWAVIRFRANNPGVWFMHCHFD 535
D++ L P N I P G+ +I G W HCH
Sbjct: 204 ---------ADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQ 254
Query: 536 VHLPWGLATTFIVEN 550
H G+ F+V+
Sbjct: 255 SHSDMGMVGLFLVKK 269
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS 130
+N P+N+ H + A G +T + PG T +F+ ++ GT +HA
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHAAPE 133
Query: 131 ML-----RATVHGAFIIRPKSGHKYPFPKP 155
+ + + G ++ P+ G K P KP
Sbjct: 134 GMVPWHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|3ABG|A Chain A, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|3ABG|B Chain B, X-Ray Crystal Analysis Of Bilirubin Oxidase From
Myrothecium Verrucaria At 2.3 Angstrom Resolution Using
A Twin Crystal
pdb|2XLL|A Chain A, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|B Chain B, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|C Chain C, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
pdb|2XLL|D Chain D, The Crystal Structure Of Bilirubin Oxidase From
Myrothecium Verrucaria
Length = 534
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 102/240 (42%), Gaps = 29/240 (12%)
Query: 46 ITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSI--WADGPNMITQCP 103
+ +G PGPT +V G +V N + ++H HG F + WA+ IT+
Sbjct: 59 LVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSRAAFDGWAED---ITE-- 113
Query: 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKE---VP 160
PG+ Y + TLW+H H + T A+ R ++G Y P ++ +P
Sbjct: 114 --PGSFKDYYYPNRQSARTLWYHDH--AMHITAENAY--RGQAG-LYMLTDPAEDALNLP 166
Query: 161 IVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYL 220
GE+ DI + + T G ++ +N GD+ + Q + K + + Y
Sbjct: 167 SGYGEF---DIPMILTSKQYTANGNLVTTNGELNSFWGDVIHVN-GQPWPFKNVEPRKYR 222
Query: 221 LRIINAALNNQLFFKIANHK-------FTVVAVDAGYTD-PYVTDVVVIAPGQTTDVLLK 272
R ++AA++ A+ F V+A D+G + P T ++ I+ + +V+
Sbjct: 223 FRFLDAAVSRSFGLYFADTDAIDTRLPFKVIASDSGLLEHPADTSLLYISMAERYEVVFD 282
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 468 SHPMHLHGYDFYVLAQGFGNYNASR----DSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523
+HP+H+H DF V+++ GN NA +S ++V RR T+ V A
Sbjct: 397 THPIHIHLVDFKVISRTSGN-NARTVMPYESGLKDVVWLGRRETVVVEA-------HYAP 448
Query: 524 NPGVWFMHCHFDVH 537
PGV+ HCH +H
Sbjct: 449 FPGVYMFHCHNLIH 462
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFR---------IINQEG 121
+N P+N+ H + A G +T + PG T +F+ + EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYVCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|3CG8|A Chain A, Laccase From Streptomyces Coelicolor
pdb|3CG8|B Chain B, Laccase From Streptomyces Coelicolor
pdb|3CG8|C Chain C, Laccase From Streptomyces Coelicolor
Length = 343
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI-FQIRSIWADGPNMITQCPIRPGNSY 110
S+PGP I V EGDTL + +N ++H HG+ ++I S DG M + + PG +
Sbjct: 73 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEISS---DGTAM-NKSDVEPGGTR 128
Query: 111 TYKFRI----INQEGTL------WWHAHISMLRATVHGAFIIR 143
TY +R +GT +WH H ++ T HG IR
Sbjct: 129 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 170
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 424 DYTNTNVSNDMSLL-FPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLA 482
D T+T V NDM++ P T VE+V+ H H+HG+ +
Sbjct: 188 DATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEY---YHTFHMHGHRWA--- 241
Query: 483 QGFGNYNASRDSKNFNLVNPQR-----RNTIAVPIG--GWAVIRFRANNPGVWFMHCHFD 535
D++ L P N I P G+ +I G W HCH
Sbjct: 242 ----------DNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQ 291
Query: 536 VHLPWGLATTFIVEN 550
H G+ F+V+
Sbjct: 292 SHSDMGMVGLFLVKK 306
>pdb|1KV7|A Chain A, Crystal Structure Of Cueo, A Multi-Copper Oxidase From E.
Coli Involved In Copper Homeostasis
pdb|1N68|A Chain A, Copper Bound To The Multicopper Oxidase Cueo
pdb|2FQD|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQE|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQF|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|2FQG|A Chain A, Crystal Structures Of E. Coli Laccase Cueo Under Different
Copper Binding Situations
pdb|3NSD|A Chain A, Silver Bound To The Multicopper Oxidase Cueo (Untagged)
pdb|3OD3|A Chain A, Cueo At 1.1 A Resolution Including Residues In Previously
Disordered Region
pdb|3PAU|A Chain A, Cueo In The Resting Oxidized State
pdb|3PAV|A Chain A, The Reduced Form Of Cueo
Length = 488
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3UAA|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data1)
pdb|3UAB|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data2)
pdb|3UAC|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data4)
pdb|3UAD|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data5)
pdb|3UAE|A Chain A, Multicopper Oxidase Cueo Mutant C500se506q (Data6)
Length = 489
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|2YXV|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXV|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|A Chain A, The Deletion Mutant Of Multicopper Oxidase Cueo
pdb|2YXW|B Chain B, The Deletion Mutant Of Multicopper Oxidase Cueo
Length = 446
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|1PF3|A Chain A, Crystal Structure Of The M441l Mutant Of The Multicopper
Oxidase Cueo
Length = 498
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3NSF|A Chain A, Apo Form Of The Multicopper Oxidase Cueo
Length = 505
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 19/145 (13%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 25 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 84
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS 130
+N P+N+ H + A G +T + PG T +F+ ++ GT +H
Sbjct: 85 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHC--- 131
Query: 131 MLRATVHGAFIIRPKSGHKYPFPKP 155
+ G ++ P+ G K P KP
Sbjct: 132 TPHPFMSGTLMVLPRDGLKDPQGKP 156
>pdb|3NSY|A Chain A, The Multi-Copper Oxidase Cueo With Six Met To Ser
Mutations (M358s, M361s,M362s,M364s,M366s,M368s)
Length = 511
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|3NSC|A Chain A, C500s Mutant Of Cueo Bound To Cu(Ii)
pdb|3NT0|A Chain A, C500s (T1d) Mutant Of Cueo Soaked In And Bound To Cu(I)
Length = 505
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 42 RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101
+ T NG+L GP +++Q G + V + N+ T+HWHG+ ++ GP I
Sbjct: 34 KTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGL-EVPGEVDGGPQGI-- 90
Query: 102 CPIRPGNSYTYKFRIINQEGTLWWHAH 128
I PG + + T W+H H
Sbjct: 91 --IPPGGKRSVTLNVDQPAATCWFHPH 115
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|4GY4|A Chain A, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|B Chain B, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
pdb|4GY4|C Chain C, Role Of The Biradical Intermediate Observed During The
Turnover Of Slac: A Two-Domain Laccase From Streptomyces
Coelicolor
Length = 278
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYT 111
S+PGP I V EGDTL + +N ++H HG+ I +DG M + + PG + T
Sbjct: 35 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDA--EISSDGTAM-NKSDVEPGGTRT 91
Query: 112 YKFRI----INQEGTL------WWHAHISMLRATVHGAFIIR 143
Y +R +GT +WH H ++ T HG IR
Sbjct: 92 YTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 132
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 424 DYTNTNVSNDMSLL-FPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLA 482
D T+T V NDM++ P T VE+V+ H H+HG+ +
Sbjct: 150 DATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEY---YHTFHMHGHRW---- 202
Query: 483 QGFGNYNASRDSKNFNLVNPQR-----RNTIAVPIG--GWAVIRFRANNPGVWFMHCHFD 535
D++ L P N I P G+ +I G W HCH
Sbjct: 203 ---------ADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQ 253
Query: 536 VHLPWGLATTFIVEN 550
H G+ F+V+
Sbjct: 254 SHSDMGMVGLFLVKK 268
>pdb|3KW8|A Chain A, Two-Domain Laccase From Streptomyces Coelicolor At 2.3 A
Resolution
Length = 276
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI-FQIRSIWADGPNMITQCPIRPGNSY 110
S+PGP I V EGDTL + +N ++H HG+ ++I S DG M + + PG +
Sbjct: 32 SVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYEISS---DGTAM-NKSDVEPGGTR 87
Query: 111 TYKFRIIN----QEGTL------WWHAHISMLRATVHGAFIIR 143
TY +R +GT +WH H ++ T HG IR
Sbjct: 88 TYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVV-GTEHGTGGIR 129
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 48/135 (35%), Gaps = 24/135 (17%)
Query: 424 DYTNTNVSNDMSLL-FPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLA 482
D T+T V NDM++ P T VE+V+ H H+HG+ +
Sbjct: 147 DATHTIVFNDMTINNRKPHTGPDFEATVGDRVEIVMITHGEY---YHTFHMHGHRW---- 199
Query: 483 QGFGNYNASRDSKNFNLVNPQR-----RNTIAVPIG--GWAVIRFRANNPGVWFMHCHFD 535
D++ L P N I P G+ +I G W HCH
Sbjct: 200 ---------ADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAGAWMYHCHVQ 250
Query: 536 VHLPWGLATTFIVEN 550
H G+ F+V+
Sbjct: 251 SHSDMGMVGLFLVKK 265
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 25 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 84
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 85 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 135
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 136 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 164
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVEFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVNFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH + + + G ++ P+ G K P KP
Sbjct: 135 MVPWH-----VVSGLSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW----GLATTFIV 548
G A +RF+A+ G + HC + +PW GL+ T +V
Sbjct: 111 GEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMV 150
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 23 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 82
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 83 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 133
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH + + + G ++ P+ G K P KP
Sbjct: 134 MVPWH-----VVSGLSGTLMVLPRDGLKDPQGKP 162
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW----GLATTFIV 548
G A +RF+A+ G + HC + +PW GL+ T +V
Sbjct: 110 GEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMV 149
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At High
Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3 -
1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase In
Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of Nitrite
Reductase With Cytochrome C
Length = 336
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu 1051
Length = 342
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 30 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 89
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 90 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 140
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 141 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 169
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 21/150 (14%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS 130
+N P+N+ H + A G +T + PG T +F+ ++ GT +H
Sbjct: 84 TNAMPHNVDFHG-------ATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPE 133
Query: 131 ML-----RATVHGAFIIRPKSGHKYPFPKP 155
+ + + G ++ P+ G K P KP
Sbjct: 134 GMVPHHVVSGMSGTLMVLPRDGLKDPQGKP 163
>pdb|2UXT|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXT|B Chain B, Sufi Protein From Escherichia Coli
pdb|2UXV|A Chain A, Sufi Protein From Escherichia Coli
pdb|2UXV|B Chain B, Sufi Protein From Escherichia Coli
Length = 451
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 104/240 (43%), Gaps = 31/240 (12%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQC 102
+ ++ +NG GPTIRV +GD + + SN N+++ G+ Q+ GP +
Sbjct: 37 RASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGL-QVPGPLMGGPARM--- 92
Query: 103 PIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT-----VHGAFIIRPKSGHKYPFPK--P 155
+ P + I TLW+HA+ A + G +++ + P P
Sbjct: 93 -MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYG 151
Query: 156 DKEVPIVLGEWWNDDIMDVANRGEIT--GVGPRISDAFTINGMPGDLYPCSENQTYKLKV 213
+ P+++ D +D E G G + D +NG+ Q+ ++V
Sbjct: 152 VDDFPVII----QDKRLDNFGTPEYNEPGSGGFVGDTLLVNGV----------QSPYVEV 197
Query: 214 EKGKTYLLRIINAALNNQLFFKIANHK-FTVVAVDAGYT-DPYVTDVVVIAPGQTTDVLL 271
+G LR++NA+ + + ++ + + V++ D G+ P + +APG+ ++L+
Sbjct: 198 SRGWVR-LRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPGERREILV 256
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+N+ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH + + G ++ P+ G K P KP
Sbjct: 135 MVPWH-----VVSGASGTLMVLPRDGLKDPQGKP 163
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 29/146 (19%)
Query: 25 VVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHVSNESPYNI 78
VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+ +N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EGTLWWHAHI 129
H + A G +T + PG T +F+ EG + WH
Sbjct: 92 DFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEGMVPWH--- 139
Query: 130 SMLRATVHGAFIIRPKSGHKYPFPKP 155
+ + + G ++ P+ G K P KP
Sbjct: 140 --VVSGLSGTLMVLPRDGLKDPEGKP 163
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW----GLATTFIV 548
G A +RF+A+ G + HC + +PW GL+ T +V
Sbjct: 111 GEQATLRFKADRSGTFVYHCAPEGMVPWHVVSGLSGTLMV 150
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 21/150 (14%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWH-AHI 129
+N P+N+ H + A G +T + PG T +F+ ++ GT +H A
Sbjct: 84 TNAMPHNVDFH-------GATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPE 133
Query: 130 SMLRATV----HGAFIIRPKSGHKYPFPKP 155
M+ V G ++ P+ G K P KP
Sbjct: 134 GMVPWHVVSGQSGTLMVLPRDGLKDPEGKP 163
>pdb|2ZOO|A Chain A, Crystal Structure Of Nitrite Reductase From
Pseudoalteromonas Haloplanktis Tac125
Length = 442
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 94/244 (38%), Gaps = 47/244 (19%)
Query: 52 SLPGPTIRVQEGDTLIVHVSN----ESPYNITIHWHGIFQIRSIWADGPNMITQCPI-RP 106
++PG IRV+EGD + ++SN + P+NI +H GP + P
Sbjct: 56 TVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLH----------AVTGPGGGAESSFTAP 105
Query: 107 GNSYTYKFRIINQEGTLWWH---AHISMLRAT-VHGAFIIRPKSGHKYPFPKPDKEVPIV 162
G++ T+ F+ +N G +H A + M A ++G ++ PK G D+E +V
Sbjct: 106 GHTSTFNFKALNP-GLYIYHCATAPVGMHIANGMYGLILVEPKEG----LAPVDREYYLV 160
Query: 163 LGEWWNDDIMDVANRGEITGVG----------PRISDAFTINGMPGDLYPCSENQTYKLK 212
G+++ +GE G +D NG G S L
Sbjct: 161 QGDFY--------TKGEFGEAGLQPFDMAKAIDEDADYVVFNGSVG-----STTDENSLT 207
Query: 213 VEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLK 272
+ G+T L I N N F + F V V+ G + +I G V K
Sbjct: 208 AKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVEGGSLKNHNVQTTLIPAGGAAIVEFK 267
Query: 273 ADQP 276
+ P
Sbjct: 268 VEVP 271
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+++ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHSVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|1NDT|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 29 SFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHG 84
+ + K + I NGS+PGPT+ V EGD TL+ +N P+N+ H
Sbjct: 38 TIEEKKMVIDDSGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVDFH--- 94
Query: 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISML-----RATVHGA 139
+ A G +T + PG T +F+ ++ GT +H S + + + G
Sbjct: 95 ----GATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPSGMVPWHVVSGMSGT 147
Query: 140 FIIRPKSGHKYPFPKP 155
++ P+ G K P P
Sbjct: 148 LMVLPRDGLKDPAGAP 163
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+++ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHSVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 17 SSTFASAAVVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHV 70
+T + VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+
Sbjct: 24 QATKSGPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPA 83
Query: 71 SNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQ---------EG 121
+N P+++ H + A G +T + PG T +F+ EG
Sbjct: 84 TNAMPHSVDFH-------GATGALGGAKLTN--VNPGEQATLRFKADRSGTFVYHCAPEG 134
Query: 122 TLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKP 155
+ WH M G ++ P+ G K P KP
Sbjct: 135 MVPWHVVSGM-----SGTLMVLPRDGLKDPQGKP 163
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 25 VVEHSFQVKNLTIGRLCRQQTITAV--NGSLPGPTIRVQEGD----TLIVHVSNESPYNI 78
VVE + ++ + + T+ A+ NGS+PGPT+ V EGD TL+ +N P+N+
Sbjct: 32 VVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNV 91
Query: 79 TIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWH-AHISMLRATV- 136
H + A G +T + PG T +F+ ++ GT +H A M+ V
Sbjct: 92 DFH-------GATGALGGAKLTN--VNPGEQATLRFK-ADRSGTFVYHCAPEGMVPWHVV 141
Query: 137 ---HGAFIIRPKSGHKYPFPKP 155
G ++ P+ G K P KP
Sbjct: 142 SGQSGTLMVLPRDGLKDPEGKP 163
>pdb|3TAS|A Chain A, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|B Chain B, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TAS|C Chain C, Small Laccase From Streptomyces Viridosporus T7a
pdb|3TBB|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBB|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form.
pdb|3TBC|A Chain A, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|B Chain B, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone.
pdb|3TBC|C Chain C, Small Laccase From Streptomyces Viridosporus T7a;
Alternate Crystal Form Complexed With Acetovanillone
Length = 313
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 16/103 (15%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI-FQIRSIWADGPNMITQCPIRPGNSY 110
++PGP I + EGDTL + N +++H HG+ ++I S DG ++ + PG +
Sbjct: 38 TIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYEISS---DGTKQ-SRSDVEPGGTR 93
Query: 111 TYKFRI----INQEGTL------WWHAHISMLRATVHGAFIIR 143
TY +R +GT +WH H ++ T HG IR
Sbjct: 94 TYTWRTHVPGRRADGTWRAGSAGYWHYHDHVV-GTEHGTGGIR 135
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 51/135 (37%), Gaps = 24/135 (17%)
Query: 424 DYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVES-HPMHLHGYDFYVLA 482
D T+T V NDM++ P T F +TV ++ + E H HLHG+ +
Sbjct: 153 DRTHTIVFNDMTINNRPAHTGPD---FEATVGDRVEFVMITHGEYYHTFHLHGHRW---- 205
Query: 483 QGFGNYNASRDSKNFNLVNPQR-----RNTIAVPIG--GWAVIRFRANNPGVWFMHCHFD 535
D++ L P N I P G+ VI G W HCH
Sbjct: 206 ---------ADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAGAWMYHCHVQ 256
Query: 536 VHLPWGLATTFIVEN 550
H G+ F+V+
Sbjct: 257 SHSDMGMVGLFLVKK 271
>pdb|3CDZ|A Chain A, Crystal Structure Of Human Factor Viii
Length = 754
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNES--PYNITIHWHGIFQIRSIWA----DGP 96
++ I +G L GP + + GDTL++ N++ PYN I+ HGI +R +++ G
Sbjct: 439 REAIQHESGIL-GPLLYGEVGDTLLIIFKNQASRPYN--IYPHGITDVRPLYSRRLPKGV 495
Query: 97 NMITQCPIRPGNSYTYKFRIINQEG---------TLWWHAHISMLRATVHG 138
+ PI PG + YK+ + ++G T ++ + ++M R G
Sbjct: 496 KHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASG 546
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 53 LPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIW--ADGPNMITQCPIR----- 105
L GPTI+ + DT+++ + N + + +++H G+ S W ++G Q R
Sbjct: 71 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGV----SYWKASEGAEYDDQTSQREKEDD 126
Query: 106 ---PGNSYTYKFRIINQEGTL 123
PG S+TY ++++ + G +
Sbjct: 127 KVFPGGSHTYVWQVLKENGPM 147
>pdb|2R7E|A Chain A, Crystal Structure Analysis Of Coagulation Factor Viii
Length = 742
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 18/111 (16%)
Query: 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNES--PYNITIHWHGIFQIRSIWA----DGP 96
++ I +G L GP + + GDTL++ N++ PYN I+ HGI +R +++ G
Sbjct: 440 REAIQHESGIL-GPLLYGEVGDTLLIIFKNQASRPYN--IYPHGITDVRPLYSRRLPKGV 496
Query: 97 NMITQCPIRPGNSYTYKFRIINQEG---------TLWWHAHISMLRATVHG 138
+ PI PG + YK+ + ++G T ++ + ++M R G
Sbjct: 497 KHLKDFPILPGEIFKYKWTVTVEDGPTKSDPRCLTRYYSSFVNMERDLASG 547
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
Query: 53 LPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIW--ADGPNMITQCPIR----- 105
L GPTI+ + DT+++ + N + + +++H G+ S W ++G Q R
Sbjct: 72 LLGPTIQAEVYDTVVITLKNMASHPVSLHAVGV----SYWKASEGAEYDDQTSQREKEDD 127
Query: 106 ---PGNSYTYKFRIINQEGTL 123
PG S+TY ++++ + G +
Sbjct: 128 KVFPGGSHTYVWQVLKENGPM 148
>pdb|1NDR|A Chain A, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|B Chain B, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDR|C Chain C, Crystallographic Structure Of A Blue Copper Nitrite
Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|A Chain A, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|B Chain B, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1NDS|C Chain C, Crystallographic Structure Of A Substrate Bound Blue
Copper Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 330
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 50 NGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIR 105
NGS+PGPT+ V EGD TL+ +N P+N+ H + +
Sbjct: 55 NGSVPGPTLVVHEGDYIELTLVNPATNSMPHNVDFHAATGALGGA---------GLTQVV 105
Query: 106 PGNSYTYKFRIINQEGTLWWH-AHISM----LRATVHGAFIIRPKSG 147
PG +F+ ++ GT +H A M + + ++GA ++ P+ G
Sbjct: 106 PGQEAVLRFK-ADRSGTFVYHCAPAGMVPWHVVSGMNGALMVLPRDG 151
>pdb|1KCW|A Chain A, X-Ray Crystal Structure Of Human Ceruloplasmin At 3.0
Angstroms
Length = 1046
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 466 VESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNP 525
++ H +H HG+ F +G Y++ + + G + + P
Sbjct: 972 IDLHTVHFHGHSFQYKHRGV--YSS---------------DVFDIFPGTYQTLEMFPRTP 1014
Query: 526 GVWFMHCHFDVHLPWGLATTFIV 548
G+W +HCH H+ G+ TT+ V
Sbjct: 1015 GIWLLHCHVTDHIHAGMETTYTV 1037
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 55 GPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIR----SIWADGPNMITQC--PIRPGN 108
GP I+ + GD + VH+ N + T H HGI + +I+ D + + PG
Sbjct: 75 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 134
Query: 109 SYTYKFRIINQEG---------TLWWHAHISMLRATVHG 138
YTY ++ T +H+HI + G
Sbjct: 135 QYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASG 173
>pdb|2J5W|A Chain A, Ceruloplasmin Revisited: Structural And Functional Roles Of
Various Metal Cation Binding Sites
Length = 1065
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 17/83 (20%)
Query: 466 VESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNP 525
++ H +H HG+ F +G Y++ + + G + + P
Sbjct: 991 IDLHTVHFHGHSFQYKHRGV--YSS---------------DVFDIFPGTYQTLEMFPRTP 1033
Query: 526 GVWFMHCHFDVHLPWGLATTFIV 548
G+W +HCH H+ G+ TT+ V
Sbjct: 1034 GIWLLHCHVTDHIHAGMETTYTV 1056
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 55 GPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIR----SIWADGPNMITQC--PIRPGN 108
GP I+ + GD + VH+ N + T H HGI + +I+ D + + PG
Sbjct: 94 GPIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGE 153
Query: 109 SYTYKFRIINQEG---------TLWWHAHISMLRATVHG 138
YTY ++ T +H+HI + G
Sbjct: 154 QYTYMLLATEEQSPGEGDGNCVTRIYHSHIDAPKDIASG 192
>pdb|3IU6|A Chain A, Crystal Structure Of The Sixth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 147
Score = 35.8 bits (81), Expect = 0.063, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 412 EPNFPNQPPVEFDYTNTNVSND 433
+PNFPN+PP+ FD NV N+
Sbjct: 41 DPNFPNKPPLTFDIIRKNVENN 62
>pdb|1SDD|A Chain A, Crystal Structure Of Bovine Factor Vai
Length = 306
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 53 LPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI----FQIRSIWADG--PNMITQCPIRP 106
L GPT+ + GD + VH N++ ++IH GI F + ++D P + P
Sbjct: 57 LLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAP 116
Query: 107 GNSYTYKFRIINQEG 121
G YTY++ I G
Sbjct: 117 GQEYTYEWIISEHSG 131
>pdb|3T9W|A Chain A, Small Laccase From Amycolatopsis Sp. Atcc 39116
pdb|3TA4|F Chain F, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|D Chain D, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
pdb|3TA4|E Chain E, Small Laccase From Amycolatopsis Sp. Atcc 39116 Complexed
With 1-(3,4-
Dimethoxyphenyl)-2-(2-Methoxyphenoxy)-1,
3-Dihydroxypropane
Length = 299
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 514 GWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVEN 550
G+ VI PG+W HCH H G+A F+V N
Sbjct: 251 GFQVIAGEGVGPGMWMYHCHVQNHSDMGMAGMFLVRN 287
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 52 SLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGI-FQIRSIWADGPNMITQCPIRPGNSY 110
++PGP + + EGDTL + + N + +++H HG+ + + S DG ++ + PG +
Sbjct: 54 TVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDYDVNS---DG-TLMNGSAVMPGQTR 109
Query: 111 TYKFR 115
Y +R
Sbjct: 110 RYTWR 114
>pdb|2DV6|A Chain A, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|B Chain B, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|C Chain C, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|D Chain D, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|E Chain E, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
pdb|2DV6|F Chain F, Crystal Structure Of Nitrite Reductase From Hyphomicrobium
Denitrificans
Length = 447
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 16/136 (11%)
Query: 38 GRLCRQQTIT--AVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADG 95
G+L T T NG +PGP +RV+ GDT+ +H+ N + ++ H + + G
Sbjct: 175 GQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKN---HKDSLMVHSVDFHGATGPGG 231
Query: 96 PNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHI----SMLRATVHGAFIIRPKSGHKYP 151
TQ PG F+ + G +H + + ++G ++ P+ G
Sbjct: 232 AAAFTQT--DPGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGG---- 284
Query: 152 FPKPDKEVPIVLGEWW 167
P+ D+E ++ GE +
Sbjct: 285 LPQVDREFYVMQGEIY 300
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 29 SFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHG 84
+ + K L I R + NGS+PGP + V E D LI +N +NI H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIIN---------QEGTLWWHAHISMLRAT 135
+ PG T +F+ EG + WH M
Sbjct: 104 GALGGG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM---- 150
Query: 136 VHGAFIIRPKSGHK 149
+GA ++ P+ G K
Sbjct: 151 -NGAIMVLPRDGLK 163
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G +RF+A PGV+ HC + +PW
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPW 144
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter Cycloclastes
Cu Nitrite Reductase With Endogenously Bound Nitrite And
No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu Nitrite
Reductase With Bound No
Length = 340
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 29 SFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHG 84
+ + K L I R + NGS+PGP + V E D LI +N +NI H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIIN---------QEGTLWWHAHISMLRAT 135
+ PG T +F+ EG + WH M
Sbjct: 104 GALGGG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM---- 150
Query: 136 VHGAFIIRPKSGHK 149
+GA ++ P+ G K
Sbjct: 151 -NGAIMVLPRDGLK 163
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G +RF+A PGV+ HC + +PW
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPW 144
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 29 SFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHG 84
+ + K L I R + NGS+PGP + V E D LI +N +NI H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIIN---------QEGTLWWHAHISMLRAT 135
+ PG T +F+ EG + WH M
Sbjct: 104 GALGGG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM---- 150
Query: 136 VHGAFIIRPKSGHK 149
+GA ++ P+ G K
Sbjct: 151 -NGAIMVLPRDGLK 163
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G +RF+A PGV+ HC + +PW
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPW 144
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 48/134 (35%), Gaps = 27/134 (20%)
Query: 29 SFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIHWHG 84
+ + K L I R + NGS+PGP + V E D LI +N +NI H
Sbjct: 44 TIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPDTNTLLHNIDFHAAT 103
Query: 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIIN---------QEGTLWWHAHISMLRAT 135
+ PG T +F+ EG + WH M
Sbjct: 104 GALGGG---------ALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSGM---- 150
Query: 136 VHGAFIIRPKSGHK 149
+GA ++ P+ G K
Sbjct: 151 -NGAIMVLPRDGLK 163
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G +RF+A PGV+ HC + +PW
Sbjct: 117 GEETTLRFKATKPGVFVYHCAPEGMVPW 144
>pdb|4AKO|A Chain A, Mutations In The Neighbourhood Of Cota-Laccase Trinuclear
Site: E498l Mutant
Length = 507
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 52/252 (20%), Positives = 92/252 (36%), Gaps = 33/252 (13%)
Query: 50 NGSLPGPTIRVQEGDTLIV------------------HVSNESPYNITIHWHGIFQIRSI 91
NG PGPTI V+ + + V H S E +H HG +
Sbjct: 52 NGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSEEPEVKTVVHLHG--GVTPD 109
Query: 92 WADG-PNMITQCPIRPGNSY----TYKFRIINQEGTLWWHAH-ISMLRATVH----GAFI 141
+DG P Y Y + + LW+H H +++ R V+ GA+I
Sbjct: 110 DSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYI 169
Query: 142 IRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLY 201
I + P + +VP+++ + ++ + P + + + G+
Sbjct: 170 IHDPKEKRLKLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETI 229
Query: 202 PCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIAN-HKFTVVAVDAGYTDPYVT-DVV 259
+ L+VE K Y R+INA+ + N F + D G V +
Sbjct: 230 LVNGKVWPYLEVEPRK-YRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSF 288
Query: 260 VIAPGQTTDVLL 271
+AP + D+++
Sbjct: 289 SLAPAERYDIII 300
>pdb|1MZY|A Chain A, Crystal Structure Of Nitrite Reductase
Length = 333
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIH 81
K + + Q +T +GS+PGP + V EGD TLI N P+NI H
Sbjct: 42 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|1ZV2|A Chain A, Cu-Containing Nitrite Reductase
pdb|2A3T|A Chain A, Cu-containing Nitrite Reductase
pdb|2DWS|A Chain A, Cu-containing Nitrite Reductase At Ph 8.4 With Bound
Nitrite
Length = 328
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIH 81
K + + Q +T +GS+PGP + V EGD TLI N P+NI H
Sbjct: 37 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|2DWT|A Chain A, Cu-Containing Nitrite Reductase At Ph 6.0 With Bound
Nitrite
pdb|2DY2|A Chain A, Nitrite Reductase Ph 6.0
Length = 329
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIH 81
K + + Q +T +GS+PGP + V EGD TLI N P+NI H
Sbjct: 37 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 88
>pdb|1N70|A Chain A, The Crystal Structure Of Nitrite Reductase Mutant
His287ala From Rhodobacter Sphaeroides
Length = 334
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIH 81
K + + Q +T +GS+PGP + V EGD TLI N P+NI H
Sbjct: 40 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 91
>pdb|1MZZ|A Chain A, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|B Chain B, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
pdb|1MZZ|C Chain C, Crystal Structure Of Mutant (M182t)of Nitrite Reductase
Length = 334
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 33 KNLTIGRLCRQQTITAVNGSLPGPTIRVQEGD----TLIVHVSNESPYNITIH 81
K + + Q +T +GS+PGP + V EGD TLI N P+NI H
Sbjct: 42 KEVQLDEDAYLQAMT-FDGSIPGPLMIVHEGDYVELTLINPPENTMPHNIDFH 93
>pdb|1NPJ|A Chain A, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|B Chain B, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPJ|C Chain C, Crystal Structure Of H145a Mutant Of Nitrite Reductase
From Alcaligenes Faecalis
pdb|1NPN|A Chain A, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|B Chain B, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|1NPN|C Chain C, Crystal Structure Of A Copper Reconstituted H145a Mutant
Of Nitrite Reductase From Alcaligenes Faecalis
pdb|2PPD|A Chain A, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|B Chain B, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPD|C Chain C, Oxidized H145a Mutant Of Afnir Bound To Nitric Oxide
pdb|2PPE|A Chain A, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|B Chain B, Reduced H145a Mutant Of Afnir Exposed To No
pdb|2PPE|C Chain C, Reduced H145a Mutant Of Afnir Exposed To No
Length = 343
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPWGLAT 544
G ++RF+A PGV+ HC +PW + +
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWAVVS 151
>pdb|3ALX|A Chain A, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|B Chain B, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|C Chain C, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
pdb|3ALX|D Chain D, Crystal Structure Of The Measles Virus Hemagglutinin Bound
To Its Cellular Receptor Slam
(Mv-H(L482r)-Slam(N102hR108Y) FUSION)
Length = 559
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 19/104 (18%)
Query: 181 TGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHK 240
+G GP I+ +GM DLY + N Y L + K L +IN L FK++ ++
Sbjct: 249 SGFGPLITHG---SGM--DLYKSNHNNVYWLTIPPMKNLALGVIN-TLEWIPRFKVSPYR 302
Query: 241 FTVVAVDAGYT-------------DPYVTDVVVIAPGQTTDVLL 271
FTV +AG D ++ +VI PGQ +L
Sbjct: 303 FTVPIKEAGGDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVL 346
>pdb|1NTD|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase Mutant
M150e That Contains Zinc
Length = 343
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 551
G ++RF+A PGV+ HC +PW + + ENG
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPWHVVSG---ENG 155
>pdb|1ET7|A Chain A, Crystal Structure Of Nitrite Reductase His255asp Mutant
From Alcaligenes Faecalis S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1ET8|A Chain A, Crystal Structure Of Nitrite Reductase His255asn Mutant
From Alcaligenes Faecalis
pdb|1J9S|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9S|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized H255n Afnir
pdb|1J9T|A Chain A, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|B Chain B, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
pdb|1J9T|C Chain C, Crystal Structure Of Nitrite Soaked Reduced H255n Afnir
Length = 341
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3H56|A Chain A, Met150leuPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 336
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9S|A Chain A, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|B Chain B, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9S|C Chain C, Crystal Structure Of The I257t Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3H4H|A Chain A, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|B Chain B, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
pdb|3H4H|C Chain C, Met94thrPHE312CYS VARIANT OF NITRITE REDUCTASE FROM
Alcaligenes Faecalis
Length = 335
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 113 GEKTILRFKATKPGVFVYHCAPPGMVPW 140
>pdb|2FJS|A Chain A, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|B Chain B, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2FJS|C Chain C, Crystal Structure Of Anaerobically Reduced Wild Type
Nitrite Reductase From A. Faecalis
pdb|2E86|A Chain A, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|B Chain B, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
pdb|2E86|C Chain C, Azide Bound To Copper Containing Nitrite Reductase From A.
Faecalis S- 6
Length = 337
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|2B08|A Chain A, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|B Chain B, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
pdb|2B08|C Chain C, Reduced Acetamide-Bound M150g Nitrite Reductase From
Alcaligenes Faecalis
Length = 340
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 117 GEKTILRFKATKPGVFVYHCAPPGMVPW 144
>pdb|2AFN|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|2AFN|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase And A
Copper Site Mutant, M150e, That Contains Zinc
pdb|1AQ8|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AQ8|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase
Reduced With Ascorbate
pdb|1AS6|A Chain A, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|B Chain B, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS6|C Chain C, Structure Of Nitrite Bound To Oxidized Alcaligenes
Faecalis Nitrite Reductase At Cryo Temperature
pdb|1AS7|A Chain A, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|B Chain B, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS7|C Chain C, Structure Of Alcaligenes Faecalis Nitrite Reductase At
Cryo Temperature
pdb|1AS8|A Chain A, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|B Chain B, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
pdb|1AS8|C Chain C, Structure Of Nitrite Bound To Reduced Alcaligenes Faecalis
Nitrite Reductase At Cryo Temperature
Length = 343
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 120 GEKTILRFKATKPGVFVYHCAPPGMVPW 147
>pdb|1L9O|A Chain A, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|B Chain B, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
pdb|1L9O|C Chain C, Crystal Structure Of Nitrite Soaked I257a Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalis
Length = 341
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1SJM|A Chain A, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|B Chain B, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SJM|C Chain C, Nitrite Bound Copper Containing Nitrite Reductase
pdb|1SNR|A Chain A, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|B Chain B, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|1SNR|C Chain C, Nitric Oxide Bound To Cu Nitrite Reductase
pdb|2P80|A Chain A, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|B Chain B, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2P80|C Chain C, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|2PP7|A Chain A, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|B Chain B, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP7|C Chain C, Crystal Structure Of Anaerobically Manipulated Wild Type
Oxidized Afnir (acetate Bound)
pdb|2PP8|A Chain A, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|B Chain B, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP8|C Chain C, Formate Bound To Oxidized Wild Type Afnir
pdb|2PP9|A Chain A, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|B Chain B, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PP9|C Chain C, Nitrate Bound Wild Type Oxidized Afnir
pdb|2PPA|A Chain A, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|B Chain B, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPA|C Chain C, Anaerobically Manipulated Wild Type Oxidized Afnir Bound
To Nitrous Oxide
pdb|2PPC|A Chain A, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|B Chain B, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
pdb|2PPC|C Chain C, Oxidized Wild Type Afnir Exposed To No (Nitrite Bound)
Length = 341
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9T|A Chain A, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|B Chain B, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9T|C Chain C, Crystal Structure Of The I257v Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9Q|A Chain A, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|B Chain B, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9Q|C Chain C, Crystal Structure Of The I257l Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9R|A Chain A, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|B Chain B, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
pdb|1L9R|C Chain C, Crystal Structure Of The I257m Variant Of The Copper-
Containing Nitrite Reductase From Alcaligenes Faecalis
S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1L9P|A Chain A, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|B Chain B, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
pdb|1L9P|C Chain C, Crystal Structure Of Nitrite Soaked I257g Variant Of The
Copper-Containing Nitrite Reductase From Alcaligenes
Faecalies S-6
Length = 341
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3H4F|A Chain A, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|B Chain B, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
pdb|3H4F|C Chain C, Met62leu Variant Of Nitrite Reductase From Alcaligenes
Faeclis
Length = 336
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1ZDQ|A Chain A, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|B Chain B, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDQ|C Chain C, Crystal Structure Of Met150gly Afnir With Methylsulfanyl
Methane Bound
pdb|1ZDS|A Chain A, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|B Chain B, Crystal Structure Of Met150gly Afnir With Acetamide Bound
pdb|1ZDS|C Chain C, Crystal Structure Of Met150gly Afnir With Acetamide Bound
Length = 336
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|1ET5|A Chain A, Crystal Structure Of Nitrite Reductase Asp98asn Mutant
From Alcaligenes Faecalis S-6
pdb|1J9Q|A Chain A, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|B Chain B, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9Q|C Chain C, Crystal Structure Of Nitrite Soaked Oxidized D98n Afnir
pdb|1J9R|A Chain A, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|B Chain B, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|1J9R|C Chain C, Crystal Structure Of Nitrite Soaked Reduced D98n Afnir
pdb|2PPF|A Chain A, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|B Chain B, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
pdb|2PPF|C Chain C, Reduced Mutant D98n Of Afnir Exposed To Nitric Oxide
Length = 341
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 513 GGWAVIRFRANNPGVWFMHCHFDVHLPW 540
G ++RF+A PGV+ HC +PW
Sbjct: 114 GEKTILRFKATKPGVFVYHCAPPGMVPW 141
>pdb|3GYR|A Chain A, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|B Chain B, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|C Chain C, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|D Chain D, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|E Chain E, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|F Chain F, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|G Chain G, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|H Chain H, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|I Chain I, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|J Chain J, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|K Chain K, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center.
pdb|3GYR|L Chain L, Structure Of Phenoxazinone Synthase From Streptomyces
Antibioticus Reveals A New Type 2 Copper Center
Length = 612
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 118 NQEGTLWWHAHISM------LRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDI 171
+ + T WW+ +M + A ++G +++R P D+E+P+++ D
Sbjct: 162 DHQATQWWYHDHAMNITRWNVMAGLYGTYLVRDDEEDALGLPSGDREIPLLIA----DRN 217
Query: 172 MDVANRGEITG 182
+D G + G
Sbjct: 218 LDTDEDGRLNG 228
>pdb|3INB|A Chain A, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|B Chain B, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
Length = 466
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 181 TGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHK 240
+G GP I+ +GM DLY + N Y L + K L +IN L FK++ +
Sbjct: 278 SGFGPLITHG---SGM--DLYKSNHNNVYWLTIPPMKNLALGVIN-TLEWIPRFKVSPYL 331
Query: 241 FTVVAVDAGYT-------------DPYVTDVVVIAPGQTTDVLL 271
FTV +AG D ++ +VI PGQ +L
Sbjct: 332 FTVPIKEAGEDCHAPTYLPAEVDGDVKLSSNLVILPGQDLQYVL 375
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,641,471
Number of Sequences: 62578
Number of extensions: 705036
Number of successful extensions: 1683
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1337
Number of HSP's gapped (non-prelim): 256
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)