Query 008366
Match_columns 568
No_of_seqs 180 out of 1720
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 22:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03389 laccase laccase, pla 100.0 1E-103 3E-108 850.9 63.3 537 23-568 1-539 (539)
2 PLN00044 multi-copper oxidase- 100.0 1E-102 2E-107 835.5 59.9 533 5-568 7-554 (596)
3 PLN02991 oxidoreductase 100.0 1E-100 2E-105 816.3 61.1 498 22-568 25-530 (543)
4 PLN02792 oxidoreductase 100.0 9E-101 2E-105 818.3 59.4 507 22-568 13-523 (536)
5 KOG1263 Multicopper oxidases [ 100.0 2E-100 5E-105 808.0 58.5 537 9-568 12-555 (563)
6 PLN02835 oxidoreductase 100.0 6E-100 1E-104 814.7 60.1 513 5-568 7-531 (539)
7 PLN02354 copper ion binding / 100.0 8E-100 2E-104 815.0 60.2 504 21-568 23-538 (552)
8 PLN02168 copper ion binding / 100.0 1.8E-98 4E-103 800.8 60.5 513 5-568 8-541 (545)
9 PLN02191 L-ascorbate oxidase 100.0 1.7E-94 3.8E-99 779.3 59.3 529 1-568 1-561 (574)
10 PLN02604 oxidoreductase 100.0 2E-93 4.4E-98 773.0 62.0 514 22-568 21-561 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 1.8E-92 4E-97 763.7 59.0 508 25-568 1-538 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 6.7E-89 1.4E-93 733.6 54.2 489 26-552 9-535 (538)
13 TIGR01480 copper_res_A copper- 100.0 2.2E-74 4.8E-79 619.7 51.6 422 25-549 45-587 (587)
14 PRK10965 multicopper oxidase; 100.0 2.1E-71 4.5E-76 592.8 48.0 428 26-549 46-523 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.3E-69 2.8E-74 574.4 45.5 405 27-550 47-469 (471)
16 COG2132 SufI Putative multicop 100.0 4.4E-56 9.4E-61 473.7 41.8 409 28-549 36-449 (451)
17 TIGR02376 Cu_nitrite_red nitri 100.0 1.1E-46 2.3E-51 379.1 26.1 265 21-312 23-299 (311)
18 PF07732 Cu-oxidase_3: Multico 100.0 4.5E-34 9.8E-39 245.5 12.3 116 31-146 1-117 (117)
19 PF07731 Cu-oxidase_2: Multico 100.0 3.9E-29 8.5E-34 223.9 11.4 108 439-550 29-136 (138)
20 PF00394 Cu-oxidase: Multicopp 99.9 2.3E-25 4.9E-30 203.8 14.1 150 157-311 1-159 (159)
21 TIGR01480 copper_res_A copper- 99.8 3.6E-17 7.9E-22 177.1 20.9 232 46-291 248-577 (587)
22 TIGR02376 Cu_nitrite_red nitri 99.7 1.6E-15 3.5E-20 153.1 23.8 240 188-551 47-298 (311)
23 TIGR03095 rusti_cyanin rusticy 99.7 2.4E-16 5.3E-21 140.6 12.7 103 39-143 36-148 (148)
24 PRK10965 multicopper oxidase; 99.6 6.1E-14 1.3E-18 150.9 20.0 240 41-292 209-514 (523)
25 PLN02835 oxidoreductase 99.6 2.1E-13 4.5E-18 147.4 24.1 255 44-311 191-514 (539)
26 TIGR03389 laccase laccase, pla 99.6 6.9E-13 1.5E-17 144.4 26.7 246 45-292 167-511 (539)
27 PRK10883 FtsI repressor; Provi 99.5 4.9E-13 1.1E-17 142.6 20.6 226 41-293 206-460 (471)
28 TIGR03096 nitroso_cyanin nitro 99.4 1.3E-12 2.8E-17 112.5 11.7 109 9-132 9-123 (135)
29 COG2132 SufI Putative multicop 99.4 6.5E-12 1.4E-16 134.5 19.6 238 41-292 186-440 (451)
30 PLN02792 oxidoreductase 99.4 1.8E-10 4E-15 124.2 26.5 246 43-291 178-494 (536)
31 PLN02991 oxidoreductase 99.4 2.2E-10 4.7E-15 123.6 26.9 243 43-288 189-498 (543)
32 PLN02354 copper ion binding / 99.4 1.3E-10 2.7E-15 126.1 24.0 241 44-288 189-506 (552)
33 TIGR03388 ascorbase L-ascorbat 99.3 9.1E-11 2E-15 127.8 22.2 234 57-292 204-515 (541)
34 PLN02168 copper ion binding / 99.3 1.8E-10 3.9E-15 124.4 22.8 241 44-287 188-502 (545)
35 PLN02604 oxidoreductase 99.3 1.3E-10 2.8E-15 127.1 21.8 234 56-292 224-538 (566)
36 TIGR03390 ascorbOXfungal L-asc 99.3 2E-10 4.4E-15 124.8 21.3 244 45-292 172-523 (538)
37 PLN02191 L-ascorbate oxidase 99.1 6.8E-09 1.5E-13 113.5 22.4 241 48-292 218-538 (574)
38 PF07731 Cu-oxidase_2: Multico 99.0 1.7E-09 3.8E-14 96.5 10.7 83 207-291 32-125 (138)
39 PLN00044 multi-copper oxidase- 99.0 7E-08 1.5E-12 105.0 24.2 231 56-289 217-522 (596)
40 PF07732 Cu-oxidase_3: Multico 98.7 1.7E-08 3.6E-13 86.9 6.1 90 444-551 26-116 (117)
41 KOG1263 Multicopper oxidases [ 98.7 3.2E-06 7E-11 91.2 23.5 247 44-292 192-527 (563)
42 PRK02710 plastocyanin; Provisi 98.7 2.4E-07 5.2E-12 80.1 12.0 73 56-143 47-119 (119)
43 PF13473 Cupredoxin_1: Cupredo 98.6 1.6E-07 3.4E-12 79.4 7.7 70 56-142 35-104 (104)
44 TIGR02656 cyanin_plasto plasto 98.3 5E-06 1.1E-10 69.4 9.0 80 56-143 17-99 (99)
45 PF06525 SoxE: Sulfocyanin (So 98.1 7.8E-05 1.7E-09 68.4 13.1 102 45-147 74-190 (196)
46 TIGR02657 amicyanin amicyanin. 98.1 2.3E-05 5E-10 63.1 8.6 73 56-143 11-83 (83)
47 PF00394 Cu-oxidase: Multicopp 98.1 2.5E-05 5.4E-10 71.4 9.6 94 443-550 59-157 (159)
48 TIGR03095 rusti_cyanin rusticy 98.0 2.5E-05 5.3E-10 70.0 8.8 92 444-549 52-148 (148)
49 PF00127 Copper-bind: Copper b 98.0 3.1E-05 6.8E-10 64.6 7.8 82 56-143 17-99 (99)
50 TIGR03094 sulfo_cyanin sulfocy 97.9 0.00024 5.3E-09 63.7 12.9 98 46-146 74-188 (195)
51 PRK02888 nitrous-oxide reducta 97.9 4.5E-05 9.8E-10 82.2 9.8 98 37-145 534-635 (635)
52 TIGR02656 cyanin_plasto plasto 97.7 0.00023 4.9E-09 59.4 8.2 83 444-549 17-99 (99)
53 TIGR02375 pseudoazurin pseudoa 97.4 0.00079 1.7E-08 57.5 8.5 75 56-146 15-90 (116)
54 TIGR03096 nitroso_cyanin nitro 97.3 0.0011 2.4E-08 57.6 8.0 61 444-535 61-121 (135)
55 COG3794 PetE Plastocyanin [Ene 97.3 0.0012 2.7E-08 56.9 8.2 75 56-144 54-128 (128)
56 TIGR03102 halo_cynanin halocya 97.1 0.0039 8.5E-08 53.1 9.4 73 56-143 42-115 (115)
57 PF00127 Copper-bind: Copper b 96.9 0.0068 1.5E-07 50.5 8.9 83 444-549 17-99 (99)
58 PF13473 Cupredoxin_1: Cupredo 96.6 0.012 2.7E-07 49.4 8.1 63 444-537 35-97 (104)
59 PF06525 SoxE: Sulfocyanin (So 96.6 0.017 3.7E-07 53.3 9.5 105 189-311 74-188 (196)
60 PRK02888 nitrous-oxide reducta 96.4 0.015 3.3E-07 63.2 9.7 79 444-550 555-634 (635)
61 PRK02710 plastocyanin; Provisi 96.4 0.017 3.7E-07 49.9 8.0 73 444-549 47-119 (119)
62 PRK10378 inactive ferrous ion 95.9 0.059 1.3E-06 55.5 10.2 74 56-145 44-118 (375)
63 TIGR02375 pseudoazurin pseudoa 95.7 0.07 1.5E-06 45.6 8.4 33 517-551 57-89 (116)
64 COG4454 Uncharacterized copper 95.7 0.059 1.3E-06 47.6 8.0 95 444-549 63-157 (158)
65 COG4454 Uncharacterized copper 95.5 0.15 3.3E-06 45.1 10.0 88 52-144 59-158 (158)
66 TIGR02695 azurin azurin. Azuri 95.0 0.12 2.6E-06 44.2 7.7 86 56-141 16-124 (125)
67 PF00116 COX2: Cytochrome C ox 93.9 0.37 8.1E-06 41.5 8.5 72 56-142 46-119 (120)
68 PF00116 COX2: Cytochrome C ox 93.5 1.5 3.3E-05 37.7 11.6 62 208-288 45-106 (120)
69 TIGR03094 sulfo_cyanin sulfocy 93.3 0.62 1.3E-05 42.3 8.9 104 190-311 74-187 (195)
70 TIGR02657 amicyanin amicyanin. 93.2 0.65 1.4E-05 37.1 8.2 73 444-549 11-83 (83)
71 TIGR03102 halo_cynanin halocya 93.0 0.77 1.7E-05 39.2 8.8 74 444-549 42-115 (115)
72 COG3794 PetE Plastocyanin [Ene 87.5 3.5 7.5E-05 35.8 8.0 75 444-550 54-128 (128)
73 PF12690 BsuPI: Intracellular 87.2 1.5 3.3E-05 34.9 5.3 61 65-125 3-80 (82)
74 TIGR02866 CoxB cytochrome c ox 86.8 3.1 6.8E-05 39.4 8.2 76 56-146 117-194 (201)
75 TIGR02695 azurin azurin. Azuri 86.3 1.6 3.4E-05 37.5 5.1 83 208-290 15-116 (125)
76 TIGR02866 CoxB cytochrome c ox 85.6 4.2 9.1E-05 38.5 8.4 74 444-551 117-193 (201)
77 PF12690 BsuPI: Intracellular 83.5 13 0.00028 29.6 9.0 66 218-284 3-82 (82)
78 COG1622 CyoA Heme/copper-type 81.0 8.5 0.00018 37.6 8.5 77 56-147 137-215 (247)
79 COG4263 NosZ Nitrous oxide red 72.5 7.1 0.00015 40.8 5.5 77 56-143 558-636 (637)
80 TIGR03079 CH4_NH3mon_ox_B meth 70.8 30 0.00064 35.4 9.2 67 44-116 270-352 (399)
81 MTH00047 COX2 cytochrome c oxi 66.8 46 0.00099 31.3 9.3 61 210-289 117-177 (194)
82 COG1622 CyoA Heme/copper-type 64.6 36 0.00078 33.3 8.4 76 443-550 136-212 (247)
83 PF04151 PPC: Bacterial pre-pe 64.5 26 0.00056 26.6 6.1 65 209-285 5-69 (70)
84 PF05506 DUF756: Domain of unk 63.4 72 0.0016 25.5 8.8 63 55-126 8-73 (89)
85 TIGR01433 CyoA cytochrome o ub 59.1 24 0.00052 34.0 6.1 62 209-289 139-200 (226)
86 PF01835 A2M_N: MG2 domain; I 57.4 40 0.00086 27.5 6.5 72 212-287 10-86 (99)
87 TIGR01432 QOXA cytochrome aa3 54.8 27 0.00058 33.5 5.6 61 209-288 130-190 (217)
88 PF10633 NPCBM_assoc: NPCBM-as 53.9 62 0.0013 25.1 6.7 64 214-286 2-75 (78)
89 MTH00140 COX2 cytochrome c oxi 53.7 38 0.00083 32.7 6.5 61 209-288 140-200 (228)
90 COG2967 ApaG Uncharacterized p 51.9 22 0.00047 30.2 3.8 47 67-116 33-87 (126)
91 PF04379 DUF525: Protein of un 50.3 21 0.00046 28.9 3.5 49 218-269 15-67 (90)
92 PTZ00047 cytochrome c oxidase 49.4 71 0.0015 28.9 7.0 61 210-289 74-134 (162)
93 KOG4063 Major epididymal secre 49.4 1.7E+02 0.0038 26.1 9.1 76 40-117 34-123 (158)
94 PRK13202 ureB urease subunit b 48.3 47 0.001 27.5 5.1 65 57-123 12-89 (104)
95 PRK05461 apaG CO2+/MG2+ efflux 48.1 40 0.00086 29.3 5.1 49 218-269 32-84 (127)
96 PF11322 DUF3124: Protein of u 45.6 56 0.0012 28.2 5.5 53 219-275 27-79 (125)
97 PF05938 Self-incomp_S1: Plant 45.2 72 0.0016 26.7 6.2 67 67-145 2-71 (110)
98 PRK15188 fimbrial chaperone pr 45.1 94 0.002 30.0 7.7 17 56-72 80-96 (228)
99 PF07705 CARDB: CARDB; InterP 45.0 1.6E+02 0.0034 23.5 10.3 68 212-288 14-85 (101)
100 MTH00008 COX2 cytochrome c oxi 44.7 67 0.0015 31.0 6.6 61 209-288 140-200 (228)
101 MTH00140 COX2 cytochrome c oxi 43.3 1.1E+02 0.0025 29.4 8.0 76 443-550 139-215 (228)
102 PF05753 TRAP_beta: Translocon 42.4 97 0.0021 28.8 7.1 88 6-123 1-103 (181)
103 PF04744 Monooxygenase_B: Mono 42.1 54 0.0012 33.7 5.6 95 5-116 206-333 (381)
104 MTH00098 COX2 cytochrome c oxi 41.3 76 0.0016 30.6 6.4 61 209-288 140-200 (227)
105 MTH00047 COX2 cytochrome c oxi 41.2 2.6E+02 0.0056 26.3 9.8 75 444-550 116-191 (194)
106 COG4633 Plastocyanin domain co 41.1 1.3E+02 0.0029 28.7 7.5 90 38-148 79-173 (272)
107 MTH00129 COX2 cytochrome c oxi 41.0 70 0.0015 30.9 6.2 61 209-288 140-200 (230)
108 COG1188 Ribosome-associated he 40.0 23 0.0005 29.2 2.2 30 46-75 35-64 (100)
109 PRK10525 cytochrome o ubiquino 38.9 55 0.0012 33.2 5.2 64 209-291 151-214 (315)
110 MTH00051 COX2 cytochrome c oxi 36.8 1E+02 0.0022 29.9 6.6 60 209-287 144-203 (234)
111 MTH00154 COX2 cytochrome c oxi 36.6 1.2E+02 0.0026 29.3 7.0 61 209-288 140-200 (227)
112 PF07691 PA14: PA14 domain; I 36.2 2.6E+02 0.0055 24.1 8.7 61 210-275 53-120 (145)
113 PRK13203 ureB urease subunit b 35.2 1E+02 0.0022 25.5 5.1 65 57-123 12-88 (102)
114 MTH00185 COX2 cytochrome c oxi 34.9 1.3E+02 0.0027 29.2 6.8 61 209-288 140-200 (230)
115 MTH00023 COX2 cytochrome c oxi 34.7 1.3E+02 0.0028 29.4 6.9 61 209-288 151-211 (240)
116 TIGR01433 CyoA cytochrome o ub 34.1 1.3E+02 0.0028 29.0 6.8 75 444-550 139-214 (226)
117 PRK05461 apaG CO2+/MG2+ efflux 32.8 62 0.0013 28.1 3.9 20 94-114 67-86 (127)
118 cd00407 Urease_beta Urease bet 32.6 1.3E+02 0.0027 24.9 5.3 65 57-123 12-88 (101)
119 MTH00139 COX2 cytochrome c oxi 31.4 1.1E+02 0.0023 29.5 5.8 61 209-288 140-200 (226)
120 MTH00076 COX2 cytochrome c oxi 31.4 1.3E+02 0.0028 29.0 6.3 61 209-288 140-200 (228)
121 TIGR00192 urease_beta urease, 31.0 1.4E+02 0.003 24.7 5.3 65 57-123 12-88 (101)
122 MTH00117 COX2 cytochrome c oxi 30.7 1.8E+02 0.0039 28.0 7.2 61 209-288 140-200 (227)
123 PRK10378 inactive ferrous ion 30.4 2.2E+02 0.0049 29.7 8.1 38 509-551 81-118 (375)
124 PF02102 Peptidase_M35: Deuter 30.0 17 0.00038 37.5 0.0 45 78-127 78-122 (359)
125 PF14524 Wzt_C: Wzt C-terminal 29.8 1.8E+02 0.0039 24.9 6.6 75 209-286 27-107 (142)
126 PF14326 DUF4384: Domain of un 29.6 2.8E+02 0.006 21.8 9.0 25 212-236 2-26 (83)
127 PTZ00047 cytochrome c oxidase 29.5 3.5E+02 0.0076 24.6 8.1 74 444-549 73-147 (162)
128 PRK15299 fimbrial chaperone pr 29.4 2.3E+02 0.0051 27.2 7.7 18 56-73 77-94 (227)
129 PF14344 DUF4397: Domain of un 29.4 3.4E+02 0.0074 22.8 11.3 21 254-274 62-82 (122)
130 COG1470 Predicted membrane pro 29.2 7.5E+02 0.016 26.6 18.3 176 58-289 278-470 (513)
131 PRK09918 putative fimbrial cha 28.6 2.6E+02 0.0056 27.0 7.9 15 259-273 187-201 (230)
132 TIGR01000 bacteriocin_acc bact 28.0 1.2E+02 0.0027 32.6 6.1 63 6-73 26-93 (457)
133 PF02419 PsbL: PsbL protein; 28.0 43 0.00094 21.9 1.5 15 5-19 20-34 (37)
134 MTH00168 COX2 cytochrome c oxi 27.9 1.5E+02 0.0032 28.6 6.0 61 209-288 140-200 (225)
135 smart00758 PA14 domain in bact 27.4 3.9E+02 0.0085 22.8 8.7 60 211-275 52-112 (136)
136 PF11614 FixG_C: IG-like fold 27.4 1.5E+02 0.0032 25.1 5.4 48 218-274 34-83 (118)
137 PRK13201 ureB urease subunit b 27.4 1.6E+02 0.0034 25.6 5.2 67 57-125 12-90 (136)
138 MTH00038 COX2 cytochrome c oxi 27.3 2E+02 0.0043 27.8 6.8 62 209-289 140-201 (229)
139 PRK13198 ureB urease subunit b 27.0 1.5E+02 0.0032 26.4 5.1 65 57-123 40-116 (158)
140 PRK13204 ureB urease subunit b 26.9 1.5E+02 0.0032 26.4 5.1 65 57-123 35-111 (159)
141 MTH00080 COX2 cytochrome c oxi 26.7 2.1E+02 0.0045 27.7 6.7 61 209-288 143-203 (231)
142 PRK11385 putativi pili assembl 26.0 2.9E+02 0.0062 26.9 7.6 18 56-73 85-102 (236)
143 PF11142 DUF2917: Protein of u 26.0 1.7E+02 0.0037 21.8 4.8 29 211-244 2-30 (63)
144 PF05506 DUF756: Domain of unk 25.8 3.4E+02 0.0074 21.5 11.5 59 217-286 20-78 (89)
145 PF14451 Ub-Mut7C: Mut7-C ubiq 24.4 58 0.0013 25.8 2.1 27 43-69 48-74 (81)
146 PRK13205 ureB urease subunit b 24.3 1.9E+02 0.0041 25.8 5.3 66 57-124 12-89 (162)
147 PF10989 DUF2808: Protein of u 24.2 87 0.0019 27.8 3.5 28 509-536 98-129 (146)
148 PF14481 Fimbrial_PilY2: Type 24.1 8.4 0.00018 31.7 -2.7 75 7-84 11-96 (118)
149 PF11191 DUF2782: Protein of u 23.9 2E+02 0.0044 23.9 5.4 14 40-53 47-60 (105)
150 COG4704 Uncharacterized protei 23.2 94 0.002 27.1 3.2 31 2-32 6-36 (151)
151 PF10969 DUF2771: Protein of u 23.2 1.1E+02 0.0023 27.9 3.8 50 57-115 70-120 (161)
152 PRK00753 psbL photosystem II r 22.6 76 0.0016 20.9 1.9 16 5-20 22-37 (39)
153 PF11948 DUF3465: Protein of u 22.1 1.5E+02 0.0032 25.9 4.2 22 104-126 86-111 (131)
154 TIGR03396 PC_PLC phospholipase 21.4 4.7E+02 0.01 29.8 9.1 65 54-127 592-659 (690)
155 COG4263 NosZ Nitrous oxide red 21.0 1.8E+02 0.0039 30.8 5.3 62 57-129 549-610 (637)
156 PRK15211 fimbrial chaperone pr 20.9 4.3E+02 0.0093 25.5 7.7 32 42-73 52-92 (229)
157 PF10636 hemP: Hemin uptake pr 20.8 1.6E+02 0.0035 19.7 3.2 20 208-227 13-32 (38)
158 PRK15218 fimbrial chaperone pr 20.6 3.7E+02 0.008 25.9 7.2 18 56-73 75-92 (226)
159 TIGR02988 YaaA_near_RecF S4 do 20.6 54 0.0012 24.0 1.1 23 46-68 35-58 (59)
160 PRK13254 cytochrome c-type bio 20.1 2.6E+02 0.0056 25.0 5.5 66 27-97 35-101 (148)
161 PF09394 Inhibitor_I42: Chagas 20.0 4.4E+02 0.0096 20.7 7.9 75 447-539 2-78 (92)
No 1
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=1.4e-103 Score=850.91 Aligned_cols=537 Identities=57% Similarity=1.060 Sum_probs=437.8
Q ss_pred CceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccc
Q 008366 23 AAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQC 102 (568)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~ 102 (568)
+++|+|+|+|++..+++||+++.+|+|||++|||+|++++||+|+|+|+|.|+++++|||||+++..++|+||+++++||
T Consensus 1 ~~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~ 80 (539)
T TIGR03389 1 AEVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQC 80 (539)
T ss_pred CceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEEeCCCCCceeEecChhhhhhcceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccccC
Q 008366 103 PIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITG 182 (568)
Q Consensus 103 ~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 182 (568)
+|+||++++|+|++++++||||||||...++.||+|+|||+++.....++..+|+|++|+++||++.....++......+
T Consensus 81 pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 81 PIQPGQSYVYNFTITGQRGTLWWHAHISWLRATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred CcCCCCeEEEEEEecCCCeeEEEecCchhhhccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 99999999999998569999999999988777999999999987766676678899999999999988776665544445
Q ss_pred CCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEEC
Q 008366 183 VGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIA 262 (568)
Q Consensus 183 ~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~ 262 (568)
..+..+|.++|||+.++.+.|+....+.+++++|++|||||||++....+.|+|+||+|+|||.||.+++|+.++++.|.
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~l~i~ 240 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKTIVIG 240 (539)
T ss_pred CCCCccceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCeEEec
Confidence 55557789999999888888987777899999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCccccccccCccCC
Q 008366 263 PGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTAN-PIMPALPAYNDTPTAYTFYSNITGLS 341 (568)
Q Consensus 263 pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~~~~~~~~~~~~~~~l~~~~ 341 (568)
+||||||+|++++.+|+|||+......+.. .+......|+|+|+++.... +..+..+..++.+....+..+++.+.
T Consensus 241 ~GqRydVlv~a~~~~g~y~i~~~~~~~~~~---~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (539)
T TIGR03389 241 PGQTTNVLLTADQSPGRYFMAARPYMDAPG---AFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLN 317 (539)
T ss_pred CCCEEEEEEECCCCCceEEEEEeccccCcc---CCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhccccc
Confidence 999999999999888999999987654432 12335689999999865421 22222222222221112222344443
Q ss_pred CCCCCCCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCCCCCCCCc
Q 008366 342 GGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPV 421 (568)
Q Consensus 342 ~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~ 421 (568)
.+.++..+|..+++++.+.+.+....... ..+...++.++.|++|+.+|..|+ .|+|+..+.++.|.+..+++..+|.
T Consensus 318 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~in~~s~~~p~-~p~l~~~~~~~~~~~~~~~~~~~p~ 395 (539)
T TIGR03389 318 SAQYPANVPVTIDRRLFFTIGLGLDPCPN-NTCQGPNGTRFAASMNNISFVMPT-TALLQAHYFGISGVFTTDFPANPPT 395 (539)
T ss_pred ccCCCCCCCCCCCeEEEEEeecccccCcc-cccccCCCcEEEEEECCcccCCCC-cchhhhhhcccCCccccCCccCCCc
Confidence 33334445556777777666554321110 001122355688999999999887 7777777766667676777777888
Q ss_pred ccccCCCC-CCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCC
Q 008366 422 EFDYTNTN-VSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLV 500 (568)
Q Consensus 422 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~ 500 (568)
.|++++.. +.++ ....+++++.+++|++|||+|+|........||||||||+||||++|.|.|+.......+|+.
T Consensus 396 ~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~ 471 (539)
T TIGR03389 396 KFNYTGTNLPNNL----FTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLV 471 (539)
T ss_pred cccCCCCCccccc----ccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccC
Confidence 77755432 1111 123466889999999999999997532345999999999999999999999875555578999
Q ss_pred CCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008366 501 NPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTPSTMLPPPPADLPQC 568 (568)
Q Consensus 501 ~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 568 (568)
||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+.++.+...++++||+.+|+|
T Consensus 472 nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 472 DPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred CCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 99999999999999999999999999999999999999999999999988777778899999999999
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=1.1e-102 Score=835.50 Aligned_cols=533 Identities=27% Similarity=0.422 Sum_probs=431.1
Q ss_pred HHHHHHHHHHHhhccccCCceEEEEEEEEEEeeccCc--eeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEE
Q 008366 5 MLLLACALVVLASSTFASAAVVEHSFQVKNLTIGRLC--RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHW 82 (568)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~ 82 (568)
++||++.++|.-+.+.|++++++|+|++++..+++|| ..+.+++||||+|||+|++++||+|+|+|+|.++++++|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHW 86 (596)
T PLN00044 7 LLLLAAALALAPAPAGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTW 86 (596)
T ss_pred HHHHHHHHhcCCCccccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEE
Confidence 5666677777766666789999999999999999999 56799999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCC-Ccee
Q 008366 83 HGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPD-KEVP 160 (568)
Q Consensus 83 HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~-~e~~ 160 (568)
||+++...+|+||+++ +||||+||++|+|+|++++++||||||+|...++. ||+|+|||++++..+.|+..++ +|.+
T Consensus 87 HGl~q~~t~w~DGv~~-TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~ 165 (596)
T PLN00044 87 HGVQQRKSAWQDGVGG-TNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDIT 165 (596)
T ss_pred CCccCCCCccccCCCC-CcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceE
Confidence 9999999999999988 99999999999999999669999999999999888 9999999999876666665544 7999
Q ss_pred EEEeecccCcHHHHHhhccccCCCCCCCceEEEcCCCCCC-CCCC----CCceeEEEEEcCcEEEEEEEeccCCCeEEEE
Q 008366 161 IVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDL-YPCS----ENQTYKLKVEKGKTYLLRIINAALNNQLFFK 235 (568)
Q Consensus 161 l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~g~~-~~~~----~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~ 235 (568)
++++||++.+...+. .....|.....++..+|||+ +.+ ++|+ +...+.++|++|++|||||||++....+.|+
T Consensus 166 i~l~DW~~~~~~~~~-~~l~~g~~~~~~d~~lING~-g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fs 243 (596)
T PLN00044 166 LFIADWYARDHRALR-RALDAGDLLGAPDGVLINAF-GPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFR 243 (596)
T ss_pred EEecccccCCHHHHH-HHHhcCCCCCCCCceEEccc-CccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEE
Confidence 999999998866543 33334444556789999999 543 3453 2344689999999999999999999999999
Q ss_pred EcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCc-eeEEEEeec-cCCCCccccCCCcceEEEEEEcCCCC
Q 008366 236 IANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARAY-AAPPPTIVAFDNTTTRGIVVYDGAST 313 (568)
Q Consensus 236 i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g-~y~~~~~~~-~~~~~~~~~~~~~~~~ail~y~~~~~ 313 (568)
|+||+|+||++||.+++|+.+|.+.|.+||||||+|++++.++ +|||+.... ..+. .+....+.|||+|+++..
T Consensus 244 IdgH~mtVIa~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~----~~~~~~~~AIl~Y~~~~~ 319 (596)
T PLN00044 244 IQGHNLLLVEAEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAA----VVDKLTGVAILHYSNSQG 319 (596)
T ss_pred ECCCEEEEEEeCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCc----cccCcceeEEEEECCCCC
Confidence 9999999999999999999999999999999999999998765 899987642 2221 133456889999998654
Q ss_pred CC-CCCCCCCC-CCCCCccccccccCccCCCCCCCCCCCCCCceEEEEEEccCc-ccCCCCCcccCCCCCceeeeecCcc
Q 008366 314 AN-PIMPALPA-YNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGL-EQCPANATCQGPFSQRLSASMNNHS 390 (568)
Q Consensus 314 ~~-~~~p~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~s 390 (568)
.. ..+|..+. +.+.....++...++.+.....+...|...++...+.+.... ..+.....| .+++.|++||.|
T Consensus 320 ~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~s~Nnvs 395 (596)
T PLN00044 320 PASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELI----DGKLRATLNEIS 395 (596)
T ss_pred CCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeecccccccc----CCeEEEEECccc
Confidence 11 11455453 444444444444555443333333444444444444433211 111000011 136899999999
Q ss_pred eeCCCchhhhhhhhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCc
Q 008366 391 FQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHP 470 (568)
Q Consensus 391 ~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP 470 (568)
|..|+ .|+|.+++.+..|.+..+|+..||.. .....+.++.+++|++|||+|+|... ..||
T Consensus 396 f~~p~-~p~L~a~~~~~~gv~~~~fp~~pp~~---------------~~~~~t~v~~~~~n~~VeiV~qn~~~---~~HP 456 (596)
T PLN00044 396 YIAPS-TPLMLAQIFNVPGVFKLDFPNHPMNR---------------LPKLDTSIINGTYKGFMEIIFQNNAT---NVQS 456 (596)
T ss_pred CCCCC-CcchhhhhccCCCcccCCCCCCCCcc---------------ccccCceEEEcCCCCEEEEEEeCCCC---CCCC
Confidence 99997 88887777777899988888877741 12235578899999999999999643 7999
Q ss_pred eeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEec
Q 008366 471 MHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVEN 550 (568)
Q Consensus 471 ~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 550 (568)
||||||+|+||++|.|.|++. ....||+.||++||||.||++||++|||++||||.|+||||++.|+..||.++|+|++
T Consensus 457 ~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~ 535 (596)
T PLN00044 457 YHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVN 535 (596)
T ss_pred eeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEec
Confidence 999999999999999999975 5568999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCCCCCCCCCCCCC
Q 008366 551 GPTP-STMLPPPPADLPQC 568 (568)
Q Consensus 551 ~~~~-~~~~~~~p~~~~~c 568 (568)
+.+. .+++++||.+++.|
T Consensus 536 ~~~~~~~~~~~pP~~~~~C 554 (596)
T PLN00044 536 PEDNSNKTVLPIPDNAIFC 554 (596)
T ss_pred CCCCccccccCCCcccCcc
Confidence 8876 78899999999999
No 3
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.1e-100 Score=816.28 Aligned_cols=498 Identities=27% Similarity=0.424 Sum_probs=401.0
Q ss_pred CCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCccc
Q 008366 22 SAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101 (568)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~ 101 (568)
.+++++|+|+|++..+++||+++.+++|||++|||+|++++||+|+|+|+|+|+++++|||||+++...+|+||+++ +|
T Consensus 25 ~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~-tQ 103 (543)
T PLN02991 25 EDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYG-TT 103 (543)
T ss_pred cCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCC-CC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred ccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccc
Q 008366 102 CPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEI 180 (568)
Q Consensus 102 ~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 180 (568)
|+|+||++|+|+|++++++||||||+|...++. ||+|+|||+++...+.|+..+++|++++++||++.....+.... .
T Consensus 104 cpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~-~ 182 (543)
T PLN02991 104 CPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQL-D 182 (543)
T ss_pred CccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHh-h
Confidence 999999999999998668999999999988877 99999999988766666667788999999999998866654332 3
Q ss_pred cCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEE
Q 008366 181 TGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVV 260 (568)
Q Consensus 181 ~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~ 260 (568)
.+.....+|.+||||+ + ..+.++|++|++|||||||++....+.|+|+||+|+|||+||.+++|..++++.
T Consensus 183 ~~~~~~~~d~~liNG~-~--------~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~p~~~~~l~ 253 (543)
T PLN02991 183 NGGKLPLPDGILINGR-G--------SGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTIQTPFSSLD 253 (543)
T ss_pred cCCCCCCCCEEEEccC-C--------CCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCccccceeeeEEE
Confidence 3444557899999999 3 236899999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCccc----cccc
Q 008366 261 IAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTAN-PIMPALPAYNDTPTAY----TFYS 335 (568)
Q Consensus 261 l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~~~~~~~~~~----~~~~ 335 (568)
|++||||||+|++++++|+|||+........ .....|||+|+++.... ..+|..+.. ..... ....
T Consensus 254 i~~GQRydvlv~a~~~~~~y~i~~~~~~~~~-------~~~~~AIl~Y~g~~~~~~~~~p~~p~~--~~~~~~~~~~~~~ 324 (543)
T PLN02991 254 VHVGQSYSVLITADQPAKDYYIVVSSRFTSK-------ILITTGVLHYSNSAGPVSGPIPDGPIQ--LSWSFDQARAIKT 324 (543)
T ss_pred EcCCcEEEEEEECCCCCCcEEEEEeeccCCC-------CcceEEEEEeCCCCCCCCCCCCCCCcc--ccccccchhhhhh
Confidence 9999999999999998999999987643211 13578999999865311 112322211 11111 1111
Q ss_pred cCccCCCCCCCCCCCCCCceEEEEEEccCc-ccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCC
Q 008366 336 NITGLSGGPQWVPCPRRVDERMFVTVGLGL-EQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPN 414 (568)
Q Consensus 336 ~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~ 414 (568)
.+.+ ..+...|...+....+++.... ..+. .+....++.|++||.||..|+ .|+|.+++.+..|.++.+
T Consensus 325 ~l~p----~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~g~~~~~iN~~s~~~p~-~p~L~~~~~~~~g~~~~~ 394 (543)
T PLN02991 325 NLTA----SGPRPNPQGSYHYGKINITRTIRLANS-----AGNIEGKQRYAVNSASFYPAD-TPLKLADYFKIAGVYNPG 394 (543)
T ss_pred cccC----CCCCCCCCccccccccccceeEEEeec-----ccccCceEEEEECCCccCCCC-CChhhhhhhcccCccccc
Confidence 2221 1122222222211111111100 0000 000123578999999999886 788877777777877654
Q ss_pred -CCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCC
Q 008366 415 -FPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRD 493 (568)
Q Consensus 415 -~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~ 493 (568)
++..++.. .......++.+++|++|||+|+|... ..||||||||+||||++|.|.|++. .
T Consensus 395 ~~~~~~~~~---------------~~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg~G~G~f~~~-~ 455 (543)
T PLN02991 395 SIPDQPTNG---------------AIFPVTSVMQTDYKAFVEIVFENWED---IVQTWHLDGYSFYVVGMELGKWSAA-S 455 (543)
T ss_pred cccccCCCC---------------ccccCCcEEEcCCCCEEEEEEeCCCC---CCCCeeeCCcceEEEEeCCCCCCcc-c
Confidence 44444321 11233467899999999999999754 7999999999999999999999976 5
Q ss_pred CCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008366 494 SKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTPSTMLPPPPADLPQC 568 (568)
Q Consensus 494 ~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 568 (568)
...+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||.++++|+++.+..+.+++||.++|+|
T Consensus 456 ~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~C 530 (543)
T PLN02991 456 RKVYNLNDAVSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLC 530 (543)
T ss_pred ccccCCCCCCcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcc
Confidence 567999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>PLN02792 oxidoreductase
Probab=100.00 E-value=8.9e-101 Score=818.30 Aligned_cols=507 Identities=23% Similarity=0.379 Sum_probs=408.9
Q ss_pred CCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCccc
Q 008366 22 SAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQ 101 (568)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~ 101 (568)
..++++|+|++++...++||+++.+++||||+|||+|++++||+|+|+|+|+|+++++|||||+++...+|+||+++ +|
T Consensus 13 ~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~-tq 91 (536)
T PLN02792 13 ADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYG-TT 91 (536)
T ss_pred cCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCC-Cc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999988 89
Q ss_pred ccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccc
Q 008366 102 CPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEI 180 (568)
Q Consensus 102 ~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~ 180 (568)
|||+||++|+|+|++++++||||||+|...++. ||+|+|||.++...+.+++.++.|++++++||++.+...+... ..
T Consensus 92 cPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~-~~ 170 (536)
T PLN02792 92 CPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKI-LD 170 (536)
T ss_pred CccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHH-hh
Confidence 999999999999998668999999999998877 9999999998765556666788999999999999876654332 22
Q ss_pred cCCC-CCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEE
Q 008366 181 TGVG-PRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVV 259 (568)
Q Consensus 181 ~g~~-~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~ 259 (568)
.+.. +..+|.+||||+ +.. ..+.+++++|++|||||+|++....+.|+|+||+|+|||+||.+++|..++++
T Consensus 171 ~g~~~~~~~d~~liNG~-~~~------~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~~~~l 243 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQ-GVS------YVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSMYTSL 243 (536)
T ss_pred ccCcCCCCCCEEEEecc-CCC------CcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcceeEE
Confidence 3332 337899999999 422 24789999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccccCcc
Q 008366 260 VIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNITG 339 (568)
Q Consensus 260 ~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~ 339 (568)
.|.+||||||+|++++.+|+|+|++.....+. .....|||+|.++....+..|..|.+++......+...++.
T Consensus 244 ~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~~-------~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 316 (536)
T PLN02792 244 DIHVGQTYSVLVTMDQPPQNYSIVVSTRFIAA-------KVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRT 316 (536)
T ss_pred EEccCceEEEEEEcCCCCceEEEEEEeccCCC-------CCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhh
Confidence 99999999999999988899999988643221 13578999999865532222333444443333333222333
Q ss_pred CCCCCCCCCCCCCCceEEEEEEccCc-ccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCC-CCC
Q 008366 340 LSGGPQWVPCPRRVDERMFVTVGLGL-EQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPN-FPN 417 (568)
Q Consensus 340 ~~~~~~~~~~p~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~-~~~ 417 (568)
...+..+..+|+..++...+.++... ..+. ......++.|++||.||..|+ +|+|.+++.++.|.++.+ |+.
T Consensus 317 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~iN~~s~~~p~-~p~L~a~~~~~~g~~~~~~~~~ 390 (536)
T PLN02792 317 NLTASGPRTNPQGSYHYGKMKISRTLILESS-----AALVKRKQRYAINGVSFVPSD-TPLKLADHFKIKGVFKVGSIPD 390 (536)
T ss_pred ccCCCCCCCCCCcccccceeccceeEEeccc-----ccccCceeEEEECCcccCCCC-CchhhhhhhccCCCcCcccCcc
Confidence 32222344445443332222211111 0000 000123578999999999997 788777766666777553 666
Q ss_pred CCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCC
Q 008366 418 QPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNF 497 (568)
Q Consensus 418 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~ 497 (568)
.||..++ ...++.++.+++|++|||+|+|... ..||||||||+||||++|.|.|++. ....+
T Consensus 391 ~p~~~~~--------------~~~~~~v~~~~~~~~VeiViqn~~~---~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~ 452 (536)
T PLN02792 391 KPRRGGG--------------MRLDTSVMGAHHNAFLEIIFQNREK---IVQSYHLDGYNFWVVGINKGIWSRA-SRREY 452 (536)
T ss_pred CCcccCC--------------CccCceEEEcCCCCEEEEEEECCCC---CCCCeeeCCCceEEEeecCCCCCcc-ccccc
Confidence 6553211 1234578899999999999999654 6899999999999999999999874 55689
Q ss_pred cCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008366 498 NLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTPSTMLPPPPADLPQC 568 (568)
Q Consensus 498 ~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 568 (568)
|+.+|++||||.||++||++|||++||||+|+||||+..|+..||.++|+|+++.+..+++++||++++.|
T Consensus 453 Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~C 523 (536)
T PLN02792 453 NLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLC 523 (536)
T ss_pred CcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999
No 5
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.5e-100 Score=808.01 Aligned_cols=537 Identities=47% Similarity=0.831 Sum_probs=474.2
Q ss_pred HHHHHHHhhccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEcccccc
Q 008366 9 ACALVVLASSTFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQI 88 (568)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~ 88 (568)
.+.+.+++....+.++++.|+|+++...+.++|++++++++||++|||+|+|++||+|+|+|.|+++++++|||||+++.
T Consensus 12 ~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~ 91 (563)
T KOG1263|consen 12 LCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR 91 (563)
T ss_pred HHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccccc
Confidence 33333333333448999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecc
Q 008366 89 RSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWW 167 (568)
Q Consensus 89 ~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~ 167 (568)
.+.|+|| +.+|||||+||++++|+|+++++.||||||+|...+|+ |++|+|||+++...+.|++.+|+|++|+++|||
T Consensus 92 kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~ 170 (563)
T KOG1263|consen 92 KNPWQDG-VYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWY 170 (563)
T ss_pred CCccccC-CccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeec
Confidence 9999999 89999999999999999999779999999999999999 999999999999888899899999999999999
Q ss_pred cC-cHHHHHhhccccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEe
Q 008366 168 ND-DIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAV 246 (568)
Q Consensus 168 ~~-~~~~~~~~~~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~ 246 (568)
.+ ....+.......+..+..+|..+|||+.|..++| .+.+++++|++|||||+|+|....+.|+|.||+|+|+++
T Consensus 171 ~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~----~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~ 246 (563)
T KOG1263|consen 171 KNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC----TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEV 246 (563)
T ss_pred cccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc----eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEe
Confidence 95 8777777777777766669999999999888888 689999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCC--CC--CCCCCCC
Q 008366 247 DAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGAST--AN--PIMPALP 322 (568)
Q Consensus 247 DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~--~~--~~~p~~~ 322 (568)
||.+++|..++++.|.||||+||++++++.+++|+|.......+... .+ .....++++|.++.. +. +..+..+
T Consensus 247 Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~--~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~ 323 (563)
T KOG1263|consen 247 DGAYTKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNV--PF-NLTTTGILRYSGSTHPASEKLPIYPFLP 323 (563)
T ss_pred cceEEeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCc--ce-eeeEEEEEEEeCCcccCcccCcccccCC
Confidence 99999999999999999999999999999999999999987665421 22 567899999998433 11 2234455
Q ss_pred CCCCCCccccccccCccCCCCCCCCCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhh
Q 008366 323 AYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQA 402 (568)
Q Consensus 323 ~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~ 402 (568)
...+...+..+..+++.+.....+..+|+..++....+++.+...|.... ..+.++.+++|+.||..|+++.++..
T Consensus 324 ~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~siN~isf~~P~tp~~l~~ 399 (563)
T KOG1263|consen 324 PGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN----KNNGKLRASINNISFVTPKTPSLLAA 399 (563)
T ss_pred cccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC----CCCcEEEEEEcceEEECCCCchhhhh
Confidence 55566666777778888877777888999999988888887776664211 34668899999999999996567888
Q ss_pred hhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEE
Q 008366 403 YFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLA 482 (568)
Q Consensus 403 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~ 482 (568)
++...+|.++.+++..|+..|++++ .+.++.+++++++++|||+|+|.+......||||||||.|+||+
T Consensus 400 ~~~~~~~~~~~d~p~~P~~~~~~~~-----------~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg 468 (563)
T KOG1263|consen 400 YFKNIPGYFTNDFPDKPPIKFDYTG-----------PTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVG 468 (563)
T ss_pred hhccCCccccCccCCCCccccCCcc-----------ccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEE
Confidence 8888888999999998888776653 46788999999999999999999866678899999999999999
Q ss_pred eCCCCCCCCCCC-CCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCC
Q 008366 483 QGFGNYNASRDS-KNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTPSTMLPPP 561 (568)
Q Consensus 483 ~~~g~~~~~~~~-~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~ 561 (568)
.|.|.|++..+. ..||+.+|+.||||.|||+||++|||.|||||+|+||||+++|...||.++|+|.++...++++.+|
T Consensus 469 ~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~ 548 (563)
T KOG1263|consen 469 YGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPP 548 (563)
T ss_pred ecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCC
Confidence 999999995444 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 008366 562 PADLPQC 568 (568)
Q Consensus 562 p~~~~~c 568 (568)
|.++++|
T Consensus 549 P~~~~~c 555 (563)
T KOG1263|consen 549 PKNLPKC 555 (563)
T ss_pred CCCcccc
Confidence 9999999
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=6.4e-100 Score=814.70 Aligned_cols=513 Identities=26% Similarity=0.400 Sum_probs=401.7
Q ss_pred HHHHHHHHHHHhh--ccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEE
Q 008366 5 MLLLACALVVLAS--STFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHW 82 (568)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~ 82 (568)
+-||+.+++++++ +-.+.+++++|+|++++...+++|+++.+|+||||+|||+||+++||+|+|+|+|.|+++++|||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~ttiHW 86 (539)
T PLN02835 7 LHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLLTW 86 (539)
T ss_pred HHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcEEe
Confidence 4456666666532 22246789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeE
Q 008366 83 HGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPI 161 (568)
Q Consensus 83 HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l 161 (568)
||+++...+||||+++ +||+|+||++|+|+|++++++||||||+|...++. ||+|+|||+++...+.+++.+|+|+++
T Consensus 87 HGl~~~~~~~~DGv~~-tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l 165 (539)
T PLN02835 87 NGIKQRKNSWQDGVLG-TNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTL 165 (539)
T ss_pred CCcccCCCCCCCCCcc-CcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEE
Confidence 9999999999999999 99999999999999997578999999999988887 999999998765555566678999999
Q ss_pred EEeecccCcHHHHHhhccccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCcee
Q 008366 162 VLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKF 241 (568)
Q Consensus 162 ~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 241 (568)
+++||++.+...+.... ..+.....++.++|||+. .+.+++++|++|||||||++....+.|+|+||+|
T Consensus 166 ~l~Dw~~~~~~~~~~~~-~~g~~~~~~d~~liNG~~----------~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~ 234 (539)
T PLN02835 166 LVGDWYKTSHKTLQQRL-DSGKVLPFPDGVLINGQT----------QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTM 234 (539)
T ss_pred EeeccccCCHHHHHHHh-hcCCCCCCCceEEEcccc----------CceEEECCCCEEEEEEEEcCCCccEEEEECCCEE
Confidence 99999998866654332 244445568899999993 3689999999999999999999999999999999
Q ss_pred EEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCC-CCCCCCC
Q 008366 242 TVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGAST-ANPIMPA 320 (568)
Q Consensus 242 ~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~-~~~~~p~ 320 (568)
+||++||.+++|..++++.|.+||||||+|++++++|+|+|+......+. .....|+|+|+++.. .+..+|.
T Consensus 235 ~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g~y~i~a~~~~~~~-------~~~~~ail~Y~~~~~~~~~~~p~ 307 (539)
T PLN02835 235 KLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPKDYYIVASTRFTRQ-------ILTATAVLHYSNSRTPASGPLPA 307 (539)
T ss_pred EEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCCcEEEEEEccccCC-------CcceEEEEEECCCCCCCCCCCCC
Confidence 99999999999999999999999999999999988899999975422211 135789999988643 1112333
Q ss_pred CCCCC---CCCccccccccCccCCCCCCCCCC----CCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeC
Q 008366 321 LPAYN---DTPTAYTFYSNITGLSGGPQWVPC----PRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQA 393 (568)
Q Consensus 321 ~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~----p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~ 393 (568)
.+..+ +...+......+.+......+... ....++++.+..... ...++..|++||.+|..
T Consensus 308 ~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~------------~~~g~~~w~iN~~s~~~ 375 (539)
T PLN02835 308 LPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP------------LINGKQRYAVNGVSYVN 375 (539)
T ss_pred CCccccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc------------ccCCeEEEEECCcccCC
Confidence 22211 000011111111111100000000 001133332222110 01124689999999988
Q ss_pred CCchhhhhhhhhcCCCcccCCC-CCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCcee
Q 008366 394 PTSLSILQAYFFNVGGVYEPNF-PNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMH 472 (568)
Q Consensus 394 p~~~~ll~~~~~~~~g~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~H 472 (568)
|+ .|+|.+.+.+.+|.++... +..++. . ..+.++.++.+++|++|||+|+|... ..||||
T Consensus 376 p~-~P~L~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~t~~~~~~~~~~Veivi~N~~~---~~HP~H 436 (539)
T PLN02835 376 SD-TPLKLADYFGIPGVFSVNSIQSLPSG-----G----------PAFVATSVMQTSLHDFLEVVFQNNEK---TMQSWH 436 (539)
T ss_pred CC-CChhhhhhhcCCCccccCccccCCCC-----C----------ccccCCeEEEcCCCCEEEEEEECCCC---CCCCCC
Confidence 87 6776666655556665432 111111 0 13345688899999999999999764 799999
Q ss_pred ecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCC
Q 008366 473 LHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGP 552 (568)
Q Consensus 473 lHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~ 552 (568)
||||+|+||++|.|.|++. ....+|+.||++||||.||++||++|||+|||||.|+|||||++|+..||+++|+|+++.
T Consensus 437 LHGh~F~Vlg~G~g~~~~~-~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~ 515 (539)
T PLN02835 437 LDGYDFWVVGYGSGQWTPA-KRSLYNLVDALTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQV 515 (539)
T ss_pred CCCccEEEEeccCCCCCcc-cccccCCCCCCccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCC
Confidence 9999999999999999865 345678999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCC
Q 008366 553 TPSTMLPPPPADLPQC 568 (568)
Q Consensus 553 ~~~~~~~~~p~~~~~c 568 (568)
+....+++||+++|+|
T Consensus 516 ~~~~~~~~~P~~~~~C 531 (539)
T PLN02835 516 HSLANEYDIPDNALLC 531 (539)
T ss_pred CccccccCCCcccccc
Confidence 8888999999999999
No 7
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=7.8e-100 Score=814.96 Aligned_cols=504 Identities=24% Similarity=0.397 Sum_probs=398.3
Q ss_pred cCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcc
Q 008366 21 ASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMIT 100 (568)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~ 100 (568)
+.+++++|+|++++..+++||+++.+++||||+|||+|++++||+|+|+|+|+++++++|||||+++...+|+||+++ +
T Consensus 23 ~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~-T 101 (552)
T PLN02354 23 AEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPG-T 101 (552)
T ss_pred ccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcC-C
Confidence 346789999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhcc
Q 008366 101 QCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGE 179 (568)
Q Consensus 101 ~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 179 (568)
||||+||++|+|+|++.+++||||||+|...++. ||+|+|||+++...+.+++.+++|++++++||+++....+.. ..
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~-~~ 180 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKK-FL 180 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHH-HH
Confidence 9999999999999998568999999999998887 999999999887666677677889999999999988665443 22
Q ss_pred ccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEE
Q 008366 180 ITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVV 259 (568)
Q Consensus 180 ~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~ 259 (568)
..+.....++.+||||+.+..+. ...+.+++++|++|||||||++....+.|+|+||+|+|||+||.+++|..++++
T Consensus 181 ~~g~~~~~~d~~liNG~~~~~~~---~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~~~l 257 (552)
T PLN02354 181 DSGRTLGRPDGVLINGKSGKGDG---KDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDYDSL 257 (552)
T ss_pred hcCCCCCCCCeEEEeCCcCCCCC---CCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcceeEE
Confidence 33433456789999999543221 235789999999999999999999999999999999999999999999999999
Q ss_pred EECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCC-CCCCCCCCCCCCCccc----ccc
Q 008366 260 VIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTAN-PIMPALPAYNDTPTAY----TFY 334 (568)
Q Consensus 260 ~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~p~~~~~~~~~~~~----~~~ 334 (568)
.|.+||||||+|++++++|+|+|+........ .....|+|+|+++.... +..|..+. +..... .+.
T Consensus 258 ~i~~GqRydVlv~a~~~~g~Y~i~a~~~~~~~-------~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~~ 328 (552)
T PLN02354 258 DVHVGQCFSVLVTANQAPKDYYMVASTRFLKK-------VLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSFR 328 (552)
T ss_pred EEccCceEEEEEECCCCCCcEEEEEeccccCC-------CccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhhh
Confidence 99999999999999988999999987432221 24578999999865411 12232211 110011 111
Q ss_pred ccCccCCCCCCCCCCC----CCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcC-CC
Q 008366 335 SNITGLSGGPQWVPCP----RRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNV-GG 409 (568)
Q Consensus 335 ~~l~~~~~~~~~~~~p----~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~-~g 409 (568)
.++.+....+.+.... ...++++.+...+ .. ....+.|++||.||..|+ .|+|...+.++ .|
T Consensus 329 ~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~g~~~~~iNn~s~~~p~-~P~L~~~~~~~~~g 395 (552)
T PLN02354 329 WNLTASAARPNPQGSYHYGKINITRTIKLVNSA--SK----------VDGKLRYALNGVSHVDPE-TPLKLAEYFGVADK 395 (552)
T ss_pred hcccccccCCCCCCccccccccccceEEEeccc--cc----------CCceEEEEECCccCCCCC-CChHHhhhhcccCC
Confidence 1122111010000000 0122222222211 00 122578999999999887 77776665443 46
Q ss_pred cccCC-CCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCC
Q 008366 410 VYEPN-FPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNY 488 (568)
Q Consensus 410 ~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~ 488 (568)
.++.+ ++..+|..++ ....+..++.++.|++|||+|+|... ..||||||||+||||++|.|.|
T Consensus 396 ~~~~~~~~~~pp~~~~-------------~~~~~~~v~~~~~~~~VeiVi~n~~~---~~HP~HLHGh~F~Vlg~G~G~~ 459 (552)
T PLN02354 396 VFKYDTIKDNPPAKIT-------------KIKIQPNVLNITFRTFVEIIFENHEK---SMQSWHLDGYSFFAVAVEPGTW 459 (552)
T ss_pred ccccCccccCCccccC-------------ccccCCeeEEcCCCCEEEEEEeCCCC---CCCCCcCCCccEEEEeecCCCC
Confidence 55433 3444443221 12345578899999999999999754 7999999999999999999999
Q ss_pred CCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008366 489 NASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTPSTMLPPPPADLPQC 568 (568)
Q Consensus 489 ~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 568 (568)
++. ....+|+.||++|||+.||++||++|||++||||.|+|||||..|+..||.+++.|.++++..++.++||++.+.|
T Consensus 460 ~~~-~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C 538 (552)
T PLN02354 460 TPE-KRKNYNLLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLC 538 (552)
T ss_pred Ccc-ccccCCcCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccc
Confidence 875 3567899999999999999999999999999999999999999999999999999999888888888899999999
No 8
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=1.8e-98 Score=800.81 Aligned_cols=513 Identities=25% Similarity=0.413 Sum_probs=396.0
Q ss_pred HHHHHHHHHHHhhccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEcc
Q 008366 5 MLLLACALVVLASSTFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHG 84 (568)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG 84 (568)
.+.|+++++|-.+.++ +++++|+|+|++..+++||+.+.+++||||+|||+|++++||+|+|+++|+|+++++|||||
T Consensus 8 ~~~~~~~~~~~~~~~~--a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHG 85 (545)
T PLN02168 8 VFVLISLVILELSYAF--APIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNG 85 (545)
T ss_pred HHHHHHHHHHHhhhcc--ccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCC
Confidence 3455555555555553 68999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEE
Q 008366 85 IFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVL 163 (568)
Q Consensus 85 ~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~ 163 (568)
+++...+|+||+++ +||||+||++|+|+|++++++||||||+|...++. ||+|+|||+++.....|++.+++|+++++
T Consensus 86 l~~~~~~~~DGv~g-tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l 164 (545)
T PLN02168 86 LQLRKNSWQDGVRG-TNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILI 164 (545)
T ss_pred ccCCCCCCcCCCCC-CcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEE
Confidence 99999999999999 99999999999999998568999999999998887 99999999998766666667889999999
Q ss_pred eecccCcHHHHHhhccccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEE
Q 008366 164 GEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTV 243 (568)
Q Consensus 164 ~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 243 (568)
+||++.+...+... ...+.....++.+||||+ +. ..+.+++++|++|||||+|++....+.|+|+||+|+|
T Consensus 165 ~Dw~~~~~~~~~~~-~~~g~~~~~~d~~liNG~-~~-------~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV 235 (545)
T PLN02168 165 GDWFYADHTVMRAS-LDNGHSLPNPDGILFNGR-GP-------EETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL 235 (545)
T ss_pred EecCCCCHHHHHhh-hhcCCCCCCCCEEEEecc-CC-------CcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE
Confidence 99998875443322 223333446789999999 32 3468999999999999999999999999999999999
Q ss_pred EEecCCCCCcEEEeEEEECCCceEEEEEEeCCCC-c---eeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCC-CCC
Q 008366 244 VAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPV-G---SYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTAN-PIM 318 (568)
Q Consensus 244 ia~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~-g---~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~~~ 318 (568)
|++||.+++|..++++.|.+||||||+|++++.+ | +|||++.....+. ...+.|+|+|+++...+ ..+
T Consensus 236 Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~-------~~~~~ail~Y~~~~~~~~~p~ 308 (545)
T PLN02168 236 VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA-------YLGGVALIRYPNSPLDPVGPL 308 (545)
T ss_pred EEECCeECCCceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC-------CcceEEEEEECCCCCCCCCCC
Confidence 9999999999999999999999999999998544 4 8999988743222 14578999998864421 113
Q ss_pred CCCCCCCCCCccccccccCccCCCCCCCCCCCCC--------CceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcc
Q 008366 319 PALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRR--------VDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHS 390 (568)
Q Consensus 319 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~--------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s 390 (568)
|..|...+.....+...+++....+..+...|.. .+.++.+... ... ..+...|++||.+
T Consensus 309 p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~----------~~g~~~~~iN~~s 376 (545)
T PLN02168 309 PLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHYGRINVTRTIILHND--VML----------SSGKLRYTINGVS 376 (545)
T ss_pred CCCCcccccccccchhhhhhhcCCCCCCCCCCcccccccccccceeEEeccc--ccc----------cCceEEEEECCCc
Confidence 3333333322222222222211111111222221 1122111110 000 1235789999999
Q ss_pred eeCCCchhhhhhhhhcCCCcccCC-CCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCC
Q 008366 391 FQAPTSLSILQAYFFNVGGVYEPN-FPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESH 469 (568)
Q Consensus 391 ~~~p~~~~ll~~~~~~~~g~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~H 469 (568)
|..|+ .|+|..++..+.+....+ ++..||.. ....++.++.+++|++|||+|+|... ..|
T Consensus 377 ~~~p~-~P~l~~~~~~~~~~~~~~~~~~~p~~~---------------~~~~~~~v~~~~~~~~VeiViqn~~~---~~H 437 (545)
T PLN02168 377 FVYPG-TPLKLVDHFQLNDTIIPGMFPVYPSNK---------------TPTLGTSVVDIHYKDFYHIVFQNPLF---SLE 437 (545)
T ss_pred cCCCC-CchhhhhhcccccccccCCCccCCCcC---------------ccccCceEEEecCCCEEEEEEeCCCC---CCC
Confidence 99997 666655544433333222 44444320 11224578899999999999999754 799
Q ss_pred ceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEe
Q 008366 470 PMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 470 P~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
|||||||+||||++|.|.|++. ....+|+.||++|||+.||++||++|||+|||||.|+|||||++|+..||.+.+.|+
T Consensus 438 P~HLHGh~F~Vvg~g~g~~~~~-~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~ 516 (545)
T PLN02168 438 SYHIDGYNFFVVGYGFGAWSES-KKAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVK 516 (545)
T ss_pred CeeeCCCceEEEECCCCCCCcc-ccccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEE
Confidence 9999999999999999999975 345789999999999999999999999999999999999999888888888888885
Q ss_pred cCCC-----C-CCCCCCCCCCCCCC
Q 008366 550 NGPT-----P-STMLPPPPADLPQC 568 (568)
Q Consensus 550 ~~~~-----~-~~~~~~~p~~~~~c 568 (568)
+++. . .+.+++||+++++|
T Consensus 517 ~~~~e~p~~~~~~~~~~~P~~~~~c 541 (545)
T PLN02168 517 GEGEEDPSTIPVRDENPIPGNVIRC 541 (545)
T ss_pred cccccCccccccccccCCChhhccc
Confidence 3332 2 46688999999999
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.7e-94 Score=779.32 Aligned_cols=529 Identities=31% Similarity=0.545 Sum_probs=396.4
Q ss_pred ChhhHHHHHHHHHHHhhccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCee
Q 008366 1 MARSMLLLACALVVLASSTFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNIT 79 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~ 79 (568)
||-+.|-++.++++|-+.++ +++++|+|++++..+++||+++.+++|||++|||+||+++||+|+|+|+|.|+ ++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~ts 78 (574)
T PLN02191 1 MAMIVWWIVTVVAVLTHTAS--AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLV 78 (574)
T ss_pred CcEeehhHHHHHHHHHHhhc--cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCcc
Confidence 66777777778888866663 68999999999999999999999999999999999999999999999999997 7899
Q ss_pred EEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCc
Q 008366 80 IHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKE 158 (568)
Q Consensus 80 iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e 158 (568)
|||||+++...+|+||+++++||+|+||++++|+|++ +++||||||||...+.. ||+|+|||+++.+...+. .+|+|
T Consensus 79 iHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e 156 (574)
T PLN02191 79 IHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTV-EKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGE 156 (574)
T ss_pred EECCCCCCCCCccccCCCccccCCcCCCCeEEEEEEC-CCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCee
Confidence 9999999999999999999999999999999999998 89999999999998887 999999999765443333 57899
Q ss_pred eeEEEeecccCcHHHHHhhccccC-CCCCCCceEEEcCCCCCCCCCCC-------------------Cce-eEEEEEcCc
Q 008366 159 VPIVLGEWWNDDIMDVANRGEITG-VGPRISDAFTINGMPGDLYPCSE-------------------NQT-YKLKVEKGK 217 (568)
Q Consensus 159 ~~l~~~d~~~~~~~~~~~~~~~~g-~~~~~~~~~~iNG~~g~~~~~~~-------------------~~~-~~l~v~~G~ 217 (568)
++|+++||++.............. .....++.++|||+ |. +.|.. ... ..+++++|+
T Consensus 157 ~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~ 234 (574)
T PLN02191 157 FNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGR-GQ-FNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNK 234 (574)
T ss_pred EEEeeeccccCChHHHHHhhccCCCCcCCCCCceEECCC-CC-CCCcccccccCCcccccceeccCCCCCceEEEEcCCC
Confidence 999999999976443222211111 11245789999998 54 33421 112 369999999
Q ss_pred EEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCC-ceeEEEEeeccCCCCcccc
Q 008366 218 TYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYAAPPPTIVA 296 (568)
Q Consensus 218 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~-g~y~~~~~~~~~~~~~~~~ 296 (568)
+|||||||++....+.|+|+||+|+|||+||.+++|+.++++.|++||||||+|++++++ ++|||+......+.
T Consensus 235 ~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~----- 309 (574)
T PLN02191 235 TYRIRLASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP----- 309 (574)
T ss_pred EEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC-----
Confidence 999999999999999999999999999999999999999999999999999999999876 58999987543331
Q ss_pred CCCcceEEEEEEcCCCCCC-CC--CCCCCCCCCCCccccccccCccCCCCCCCCCCCC-CCceEEEEEEccCcccCCCCC
Q 008366 297 FDNTTTRGIVVYDGASTAN-PI--MPALPAYNDTPTAYTFYSNITGLSGGPQWVPCPR-RVDERMFVTVGLGLEQCPANA 372 (568)
Q Consensus 297 ~~~~~~~ail~y~~~~~~~-~~--~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~-~~d~~~~~~~~~~~~~~~~~~ 372 (568)
......|+|+|.+...+. +. .|..+.+++........ ...+.....+ ..|. ..+..+.+.... .
T Consensus 310 -~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~-~~p~~~~~~~~~~~~~~--~------ 377 (574)
T PLN02191 310 -NTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFS--KKIFSAMGSP-SPPKKYRKRLILLNTQN--L------ 377 (574)
T ss_pred -CCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhccc--ccccccccCC-CCCCcccceEEEecccc--e------
Confidence 112356999998765421 11 11122222221111111 1111111111 1222 234444332110 0
Q ss_pred cccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCCCCCCC-CcccccCCCCCCCCccccCCCCCceEEEcccC
Q 008366 373 TCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQP-PVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFN 451 (568)
Q Consensus 373 ~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 451 (568)
.....+|.+||.+|..|+ .|+|...+.+..+.+..+.+... +..|+..... . ....+.+..++.+++|
T Consensus 378 -----~~~~~~~~~n~~s~~~p~-~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~v~~~~~~ 446 (574)
T PLN02191 378 -----IDGYTKWAINNVSLVTPA-TPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPP--P---FPNTTTGNGIYVFPFN 446 (574)
T ss_pred -----eCCeEEEEECcccCcCCC-cchHHHHhhccCcccccCCCcccccccccccCCC--c---cccccccceeEEecCC
Confidence 122458999999999887 66666555555454443333221 1122211100 0 0012345678899999
Q ss_pred CEEEEEEEeCCcC---CCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeE
Q 008366 452 STVEMVLQNTALI---AVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVW 528 (568)
Q Consensus 452 ~~ve~~l~N~~~~---~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w 528 (568)
++|||+|+|.... ....||||||||+||||++|.|.|++......+|+.||++|||+.||++||++|||++||||.|
T Consensus 447 ~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDNPG~W 526 (574)
T PLN02191 447 VTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDNPGVW 526 (574)
T ss_pred CEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCCCEEE
Confidence 9999999997411 2479999999999999999999999754556789999999999999999999999999999999
Q ss_pred EEEeecccccccccEEEEEEecCCCCCCCCCCCCCCCCCC
Q 008366 529 FMHCHFDVHLPWGLATTFIVENGPTPSTMLPPPPADLPQC 568 (568)
Q Consensus 529 ~~HCHil~H~d~GM~~~~~V~~~~~~~~~~~~~p~~~~~c 568 (568)
+|||||+||+..||+++|.. +.+ .++.+|++++.|
T Consensus 527 l~HCHi~~Hl~~Gm~~~~~e--~~~---~~~~~p~~~~~C 561 (574)
T PLN02191 527 FFHCHIEPHLHMGMGVVFAE--GLN---RIGKIPDEALGC 561 (574)
T ss_pred EEecCchhhhhcCCEEEEec--Chh---hccCCCcchhhh
Confidence 99999999999999999963 333 245588999999
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=2e-93 Score=773.05 Aligned_cols=514 Identities=33% Similarity=0.562 Sum_probs=390.3
Q ss_pred CCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCCCcc
Q 008366 22 SAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPNMIT 100 (568)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~~~ 100 (568)
.+++++|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+ .++++|||||+++.+.+|+||+++++
T Consensus 21 ~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~~~~t 100 (566)
T PLN02604 21 EARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGTEGVT 100 (566)
T ss_pred cCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCCCccc
Confidence 67899999999999999999999999999999999999999999999999998 58999999999999999999999999
Q ss_pred cccCCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhcc
Q 008366 101 QCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGE 179 (568)
Q Consensus 101 ~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~ 179 (568)
||+|+||++++|+|++ +++||||||||...+.. ||+|+|||+++.+...++ .+|+|.+|+++||++....+......
T Consensus 101 q~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~~~~~~~ 178 (566)
T PLN02604 101 QCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYEQALGLS 178 (566)
T ss_pred cCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHHHHHhhc
Confidence 9999999999999998 89999999999988877 999999999886555555 47889999999999988765444322
Q ss_pred ccC-CCCCCCceEEEcCCCCCCCCCCC-----------------CceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCcee
Q 008366 180 ITG-VGPRISDAFTINGMPGDLYPCSE-----------------NQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKF 241 (568)
Q Consensus 180 ~~g-~~~~~~~~~~iNG~~g~~~~~~~-----------------~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 241 (568)
... .....++..+|||+ |. +.|+. ...+.+++++|++|||||||++....+.|+|+||+|
T Consensus 179 ~~~~~~~~~~d~~liNG~-G~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~ 256 (566)
T PLN02604 179 SIPFDWVGEPQSLLIQGK-GR-YNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNM 256 (566)
T ss_pred cCCCccCCCCCceEEcCC-CC-CCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEE
Confidence 111 11235789999999 64 34431 133579999999999999999999999999999999
Q ss_pred EEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCc-eeEEEEeeccCCCCccccCCCcceEEEEEEcCCCC--CCCCC
Q 008366 242 TVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVG-SYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGAST--ANPIM 318 (568)
Q Consensus 242 ~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g-~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~--~~~~~ 318 (568)
+|||+||.+++|+.++.+.|.+||||||+|++++++| +|||++.....+. ......|||+|++... .++..
T Consensus 257 ~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~------~~~~~~aIL~Y~~~~~~~~~~~~ 330 (566)
T PLN02604 257 TVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN------TTPPGLAIFNYYPNHPRRSPPTV 330 (566)
T ss_pred EEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC------CCcceeEEEEECCCCCCCCCCCC
Confidence 9999999999999999999999999999999998775 8999987544321 1245789999996532 11111
Q ss_pred -CCCCCCCCCCccccccccCccCCCCCCCCCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCch
Q 008366 319 -PALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSL 397 (568)
Q Consensus 319 -p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~ 397 (568)
|..+.+++..........+..+.. .+...+...++++.+...... ....+.|++|+.+|..|+ .
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~------------~~~~~~w~in~~~~~~p~-~ 395 (566)
T PLN02604 331 PPSGPLWNDVEPRLNQSLAIKARHG--YIHPPPLTSDRVIVLLNTQNE------------VNGYRRWSVNNVSFNLPH-T 395 (566)
T ss_pred CCCCCcccccchhhcchhccccccc--CcCCCCCCCCeEEEEeccccc------------cCCeEEEEECcccCCCCC-C
Confidence 111122211111110001111110 111223445666554332211 122468999999999887 6
Q ss_pred hhhhhhhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcC---CCCCCceeec
Q 008366 398 SILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALI---AVESHPMHLH 474 (568)
Q Consensus 398 ~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~---~~~~HP~HlH 474 (568)
|+|...+....|.++.+. ++..+....-...........+.+..++.++.|++||++|+|.... ....||||||
T Consensus 396 p~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLH 472 (566)
T PLN02604 396 PYLIALKENLTGAFDQTP---PPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLH 472 (566)
T ss_pred chhHhhhhcCCCcccCCC---CCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEec
Confidence 666666655556554221 1211211000000000000133456788999999999999997421 2468999999
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCC
Q 008366 475 GYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTP 554 (568)
Q Consensus 475 G~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~ 554 (568)
||+||||++|.|.|++..+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. .
T Consensus 473 GH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~--~-- 548 (566)
T PLN02604 473 GHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEG--I-- 548 (566)
T ss_pred CCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeC--h--
Confidence 999999999999998766667889999999999999999999999999999999999999999999999999754 2
Q ss_pred CCCCCCCCCCCCCC
Q 008366 555 STMLPPPPADLPQC 568 (568)
Q Consensus 555 ~~~~~~~p~~~~~c 568 (568)
..++++|.++++|
T Consensus 549 -~~~~~~p~~~~~C 561 (566)
T PLN02604 549 -ERVGKLPSSIMGC 561 (566)
T ss_pred -hhccCCCCCcCcc
Confidence 2467899999999
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=1.8e-92 Score=763.68 Aligned_cols=508 Identities=32% Similarity=0.572 Sum_probs=385.5
Q ss_pred eEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCCccccc
Q 008366 25 VVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNMITQCP 103 (568)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~ 103 (568)
+++|+|++++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|.+. ++++|||||+++.+.+|+||+++++||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999985 7899999999999999999999999999
Q ss_pred CCCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccccC
Q 008366 104 IRPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITG 182 (568)
Q Consensus 104 i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g 182 (568)
|+||++++|+|++ +++||||||||...++. ||+|+|||+++.....++ .+|+|++|+++||+++.............
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999998 89999999999988877 999999999886544455 47899999999999987654433322111
Q ss_pred -CCCCCCceEEEcCCCCCCCCCCCC-------------------ceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeE
Q 008366 183 -VGPRISDAFTINGMPGDLYPCSEN-------------------QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFT 242 (568)
Q Consensus 183 -~~~~~~~~~~iNG~~g~~~~~~~~-------------------~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 242 (568)
.....++.++|||+ |. +.|... ....++|++|++|||||||++....+.|+|+||+|+
T Consensus 159 ~~~~~~~d~~liNG~-g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~ 236 (541)
T TIGR03388 159 MRWIGEPQSLLINGR-GQ-FNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLT 236 (541)
T ss_pred CcCCCCCcceEECCC-CC-CCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEE
Confidence 11235689999999 53 334211 124589999999999999999999999999999999
Q ss_pred EEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCC-ceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCC-C--CC
Q 008366 243 VVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPV-GSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTAN-P--IM 318 (568)
Q Consensus 243 via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~-g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~-~--~~ 318 (568)
|||+||.+++|..++.+.|++||||||+|++++.+ |+|||++....... ......|+|+|++..... + ..
T Consensus 237 VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~------~~~~~~aiL~Y~~~~~~~~p~~~~ 310 (541)
T TIGR03388 237 VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP------NTPPGLTVLNYYPNSPSRLPPTPP 310 (541)
T ss_pred EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC------CCccEEEEEEECCCCCCCCCCCCC
Confidence 99999999999999999999999999999999766 48999987644321 123578999998754421 1 11
Q ss_pred CCCCCCCCCCccccccccCccCCCCCCCCCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchh
Q 008366 319 PALPAYNDTPTAYTFYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLS 398 (568)
Q Consensus 319 p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ 398 (568)
|..+.+.+......+ ++..+.... ....+...++++.+...... .....+|++||.+|..|+ .|
T Consensus 311 ~~~p~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~n~~s~~~p~-~p 374 (541)
T TIGR03388 311 PVTPAWDDFDRSKAF--SLAIKAAMG-SPKPPETSDRRIVLLNTQNK------------INGYTKWAINNVSLTLPH-TP 374 (541)
T ss_pred CCCCCccccchhhcc--chhhhcccc-CCCCCCCCCcEEEEeccCcc------------cCceEEEEECcccCCCCC-cc
Confidence 222333322111111 111111111 11233456666554332110 122467999999998887 56
Q ss_pred hhhhhhhcCCCcccCCCC-CCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcC---CCCCCceeec
Q 008366 399 ILQAYFFNVGGVYEPNFP-NQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALI---AVESHPMHLH 474 (568)
Q Consensus 399 ll~~~~~~~~g~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~---~~~~HP~HlH 474 (568)
+|...+.+..+.+..+.+ ...+..|+..... .. ...+.++.++.++.|++|||+|+|.... ....||||||
T Consensus 375 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLH 449 (541)
T TIGR03388 375 YLGSLKYNLLNAFDQKPPPENYPRDYDIFKPP-PN----PNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLH 449 (541)
T ss_pred HHHHHhhcCCccccCCCCcccccccccccCCC-cc----cccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEec
Confidence 665554443333322111 1111112111100 00 0234567888999999999999996421 2468999999
Q ss_pred CCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecCCCC
Q 008366 475 GYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENGPTP 554 (568)
Q Consensus 475 G~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~~~~ 554 (568)
||+||||++|.|.|+...+...+|+.||++|||+.||++||++|||++||||.|+|||||+||+..||+++|.+. ++
T Consensus 450 Gh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~--~~- 526 (541)
T TIGR03388 450 GHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEG--VE- 526 (541)
T ss_pred CCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCCCeEeeeeccchhhhhcccEEEEecc--cc-
Confidence 999999999999998765556789999999999999999999999999999999999999999999999999754 22
Q ss_pred CCCCCCCCCCCCCC
Q 008366 555 STMLPPPPADLPQC 568 (568)
Q Consensus 555 ~~~~~~~p~~~~~c 568 (568)
.++.+|+++++|
T Consensus 527 --~~~~~P~~~~~C 538 (541)
T TIGR03388 527 --KVGKLPKEALGC 538 (541)
T ss_pred --ccCCCCccccCC
Confidence 367799999999
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=6.7e-89 Score=733.63 Aligned_cols=489 Identities=27% Similarity=0.459 Sum_probs=370.9
Q ss_pred EEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCCcccccC
Q 008366 26 VEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNMITQCPI 104 (568)
Q Consensus 26 ~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~~~~~~i 104 (568)
-.|+|++++...+++|+++.+++|||++|||+|++++||+|+|+|+|.|+ ++++|||||+++...+|+||+++++||+|
T Consensus 9 ~~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI 88 (538)
T TIGR03390 9 PDHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPI 88 (538)
T ss_pred ccEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCC
Confidence 36899999999999999999999999999999999999999999999997 89999999999999999999999999999
Q ss_pred CCCCeEEEEEEeC-CCCCceeEecChhhhhhcceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccccCC
Q 008366 105 RPGNSYTYKFRII-NQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGV 183 (568)
Q Consensus 105 ~PG~~~~y~f~~~-~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~ 183 (568)
+||++++|+|+++ +++||||||||...++.||+|+|||+++...+ + .+|+|++|+++||++....++.........
T Consensus 89 ~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~l~G~lIV~~~~~~~--~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 89 PPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVTAFGPLIVEDCEPPP--Y-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCCcEEEEEEecCCCCeeeEEecCCchhhhcceeEEEEccCCccC--C-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 9999999999974 58999999999988877999999999875432 2 468899999999999987665543322211
Q ss_pred -CCCCCceEEEcCCCCCCCCC----C---CCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCce-eEEEEecCCCCCcE
Q 008366 184 -GPRISDAFTINGMPGDLYPC----S---ENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHK-FTVVAVDAGYTDPY 254 (568)
Q Consensus 184 -~~~~~~~~~iNG~~g~~~~~----~---~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~p~ 254 (568)
....++.++|||+.+.. .| + ....+.+++++|++|||||||++....+.|+|+||+ |+|||+||.+++|+
T Consensus 166 ~~~~~~d~~liNG~~~~~-~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~ 244 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNK-SFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPA 244 (538)
T ss_pred ccCCCCceEEECCccccc-cccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCce
Confidence 12356899999994322 11 0 113578999999999999999999999999999999 99999999999999
Q ss_pred EEeEEEECCCceEEEEEEeCCC-------CceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCC-CCCCCCCCCCCC
Q 008366 255 VTDVVVIAPGQTTDVLLKADQP-------VGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTA-NPIMPALPAYND 326 (568)
Q Consensus 255 ~~d~~~l~pg~r~dv~~~~~~~-------~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~-~~~~p~~~~~~~ 326 (568)
.++.+.|++||||||+|++++. +|+|||++.....+. .....|+|+|++...+ .+..|..+....
T Consensus 245 ~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~-------~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~ 317 (538)
T TIGR03390 245 KIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPK-------VYRGYAVLRYRSDKASKLPSVPETPPLPL 317 (538)
T ss_pred EeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCC-------cceEEEEEEeCCCCCCCCCCCCCCCCCCc
Confidence 9999999999999999999964 489999987644322 1357899999865432 111222221111
Q ss_pred CCcc-ccccccCccCCCCCCC-CCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeC--CCchhhhhh
Q 008366 327 TPTA-YTFYSNITGLSGGPQW-VPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQA--PTSLSILQA 402 (568)
Q Consensus 327 ~~~~-~~~~~~l~~~~~~~~~-~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~--p~~~~ll~~ 402 (568)
.... ......+.++.....+ ...+..+|+++.+.+.+.... ..+...|++||.+|.. |+ .|+|..
T Consensus 318 ~~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~----------~~g~~~~~~N~~s~~~~~~~-~P~L~~ 386 (538)
T TIGR03390 318 PNSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDP----------LNGRVAWLQNGLSWTESVRQ-TPYLVD 386 (538)
T ss_pred cCcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccc----------cCCeEEEEECCcccCCCCCC-CchHHH
Confidence 0000 0111123333221111 112345677776666543211 1235789999999986 45 566655
Q ss_pred hhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcC-----CCCCCceeecCCc
Q 008366 403 YFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALI-----AVESHPMHLHGYD 477 (568)
Q Consensus 403 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~-----~~~~HP~HlHG~~ 477 (568)
.+.+. . +..++ |+..... ........++.++.|++|||+|+|.... ....||||||||+
T Consensus 387 ~~~~~--~-----~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~ 450 (538)
T TIGR03390 387 IYENG--L-----PATPN--YTAALAN-------YGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRH 450 (538)
T ss_pred HhcCC--C-----CcCCC--ccccccc-------CCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCc
Confidence 44321 0 11110 1100000 0112344678899999999999996411 2489999999999
Q ss_pred EEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeC----------CCcEEEEEEEecCceeEEEEeecccccccccEEEEE
Q 008366 478 FYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVP----------IGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFI 547 (568)
Q Consensus 478 F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp----------~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~ 547 (568)
||||++|.|.|++......+++.||++|||+.|| ++||++|||++||||.|+|||||+||+.+||+++|.
T Consensus 451 F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~ 530 (538)
T TIGR03390 451 FYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWV 530 (538)
T ss_pred EEEEcccccccCCccChhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEE
Confidence 9999999999997554556788999999999996 789999999999999999999999999999999999
Q ss_pred EecCC
Q 008366 548 VENGP 552 (568)
Q Consensus 548 V~~~~ 552 (568)
|.+.+
T Consensus 531 ~~~~~ 535 (538)
T TIGR03390 531 FGDAE 535 (538)
T ss_pred eCChH
Confidence 87643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=2.2e-74 Score=619.65 Aligned_cols=422 Identities=26% Similarity=0.434 Sum_probs=314.9
Q ss_pred eEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccC
Q 008366 25 VVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPI 104 (568)
Q Consensus 25 ~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i 104 (568)
.++|+|++++..++++|+.+.+|+|||++|||+||+++||+|+|+|+|.++++++|||||+++.. ++||+|+++||+|
T Consensus 45 ~~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I 122 (587)
T TIGR01480 45 GTEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGI 122 (587)
T ss_pred CceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCccccccc
Confidence 37899999999999999999999999999999999999999999999999999999999999864 4799999999999
Q ss_pred CCCCeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccc---
Q 008366 105 RPGNSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEI--- 180 (568)
Q Consensus 105 ~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~--- 180 (568)
+||++++|+|++ .++||||||||...+.. ||+|+|||+++...+ + .+|+|++|+|+||++.+...++.....
T Consensus 123 ~PG~s~~Y~f~~-~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p--~-~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~ 198 (587)
T TIGR01480 123 APGETFTYRFPV-RQSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDP--V-RADREHVVLLSDWTDLDPAALFRKLKVMAG 198 (587)
T ss_pred CCCCeEEEEEEC-CCCeeEEEecCchhHhhccceEEEEECCCcccc--C-CCCceEEEEeeecccCCHHHHHHhhhcccc
Confidence 999999999998 89999999999987776 999999999865432 2 578999999999997665544322110
Q ss_pred ------------------cCCC----------------------CCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEE
Q 008366 181 ------------------TGVG----------------------PRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYL 220 (568)
Q Consensus 181 ------------------~g~~----------------------~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~r 220 (568)
.|.. ......+++||+.- ...+.+.+++|++||
T Consensus 199 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-------~~~~~~~v~~G~rvR 271 (587)
T TIGR01480 199 HDNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-------AGNWTGLFRPGEKVR 271 (587)
T ss_pred cccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-------CCCceEEECCCCEEE
Confidence 0100 00012378999832 134678999999999
Q ss_pred EEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCc
Q 008366 221 LRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNT 300 (568)
Q Consensus 221 lRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~ 300 (568)
|||||+++...+.|+|+||+|+||+.||.+++|+.++.+.|++||||||+|+++ ..|.|+|.+.......
T Consensus 272 LR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~-~~g~~~i~a~~~~~~~--------- 341 (587)
T TIGR01480 272 LRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPT-GDDAFTIFAQDSDRTG--------- 341 (587)
T ss_pred EEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecC-CCceEEEEEEecCCCc---------
Confidence 999999999999999999999999999999999999999999999999999987 5689999988765433
Q ss_pred ceEEEEEEcCCCC-CCCCCCCCCCCC--CCCc-c---------cccc----ccCc-------c-----C--CC-CCCC--
Q 008366 301 TTRGIVVYDGAST-ANPIMPALPAYN--DTPT-A---------YTFY----SNIT-------G-----L--SG-GPQW-- 346 (568)
Q Consensus 301 ~~~ail~y~~~~~-~~~~~p~~~~~~--~~~~-~---------~~~~----~~l~-------~-----~--~~-~~~~-- 346 (568)
...++|.+.+... ..+.++..+... +... . .... .+.. . + .. ...+
T Consensus 342 ~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (587)
T TIGR01480 342 YARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKHPAS 421 (587)
T ss_pred eEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccCccc
Confidence 4778888875422 111111111000 0000 0 0000 0000 0 0 00 0000
Q ss_pred ----------CCC---------------------------------CCCCceEEEEEEccCcccCCCCCcccCCCCCcee
Q 008366 347 ----------VPC---------------------------------PRRVDERMFVTVGLGLEQCPANATCQGPFSQRLS 383 (568)
Q Consensus 347 ----------~~~---------------------------------p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (568)
+.. ++..++.+.+.+ ..+..++.
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L--------------~g~m~~~~ 487 (587)
T TIGR01480 422 EPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHL--------------TGNMERFA 487 (587)
T ss_pred ccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEE--------------cCCCceeE
Confidence 000 001111111111 01223456
Q ss_pred eeecCcceeCCCchhhhhhhhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCc
Q 008366 384 ASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTAL 463 (568)
Q Consensus 384 ~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~ 463 (568)
|++||..|.. ...+.++.|++|+|.|.|..+
T Consensus 488 wtiNG~~~~~-------------------------------------------------~~pl~v~~Gervri~l~N~t~ 518 (587)
T TIGR01480 488 WSFDGEAFGL-------------------------------------------------KTPLRFNYGERLRVVLVNDTM 518 (587)
T ss_pred EEECCccCCC-------------------------------------------------CCceEecCCCEEEEEEECCCC
Confidence 7777654311 134569999999999999776
Q ss_pred CCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccE
Q 008366 464 IAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLA 543 (568)
Q Consensus 464 ~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~ 543 (568)
+.||||||||.|+++..+ | ..+.+|||+.|+|++.+.++|.+++||.|+||||++.|++.|||
T Consensus 519 ---~~HpmHlHG~~f~v~~~~-G-------------~~~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~ 581 (587)
T TIGR01480 519 ---MAHPIHLHGMWSELEDGQ-G-------------EFQVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMF 581 (587)
T ss_pred ---CCcceeEcCceeeeecCC-C-------------cccccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCc
Confidence 999999999999998652 1 12457899999999999999999999999999999999999999
Q ss_pred EEEEEe
Q 008366 544 TTFIVE 549 (568)
Q Consensus 544 ~~~~V~ 549 (568)
..|+|.
T Consensus 582 ~~~~v~ 587 (587)
T TIGR01480 582 REVTVR 587 (587)
T ss_pred EEEEeC
Confidence 999873
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=2.1e-71 Score=592.76 Aligned_cols=428 Identities=19% Similarity=0.260 Sum_probs=295.6
Q ss_pred EEEEEEEEEEeeccCc-eeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccC
Q 008366 26 VEHSFQVKNLTIGRLC-RQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPI 104 (568)
Q Consensus 26 ~~~~~~~~~~~~~~~G-~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i 104 (568)
..|+|++++...+.+| ....+|+|||++|||+||+++||+|+|+++|.|+++++|||||+++... +||+| ||+|
T Consensus 46 ~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~~--~DG~p---q~~I 120 (523)
T PRK10965 46 GRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPGE--VDGGP---QGII 120 (523)
T ss_pred ccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCCCc--cCCCC---CCCC
Confidence 4699999999999875 4457999999999999999999999999999999999999999998865 69986 8999
Q ss_pred CCCCeEEEEEEeCCCCCceeEecChhh----hhh-cceEEEEEecCCCCCCCCCC--CCCceeEEEeecccCcHHHHHhh
Q 008366 105 RPGNSYTYKFRIINQEGTLWWHAHISM----LRA-TVHGAFIIRPKSGHKYPFPK--PDKEVPIVLGEWWNDDIMDVANR 177 (568)
Q Consensus 105 ~PG~~~~y~f~~~~~~Gt~~YH~h~~~----~~~-Gl~G~liV~~~~~~~~~~~~--~~~e~~l~~~d~~~~~~~~~~~~ 177 (568)
.||++++|+|++++++||||||+|.++ +.. ||+|+|||+++.+...+++. ..+|++|+++||+.+...++...
T Consensus 121 ~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~ 200 (523)
T PRK10965 121 APGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQ 200 (523)
T ss_pred CCCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceecc
Confidence 999999999998556899999999854 333 99999999988765433332 34689999999988664433211
Q ss_pred ccc-cCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEE-cCceeEEEEecCCCC-CcE
Q 008366 178 GEI-TGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKI-ANHKFTVVAVDAGYT-DPY 254 (568)
Q Consensus 178 ~~~-~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~ 254 (568)
... .......++.++|||+.+ |.+.++ +++|||||+|+++.+.+.|++ +||+|+|||.||.++ +|.
T Consensus 201 ~~~~~~~~g~~gd~~lVNG~~~----------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~~P~ 269 (523)
T PRK10965 201 LDVMTAAVGWFGDTLLTNGAIY----------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLAEPV 269 (523)
T ss_pred ccccccccCccCCeEEECCccc----------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCcccCcc
Confidence 110 011123568999999943 566775 579999999999999999998 899999999999987 899
Q ss_pred EEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCcccccc
Q 008366 255 VTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFY 334 (568)
Q Consensus 255 ~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~~~~~~~~~~~~~ 334 (568)
.++.+.|+||||+||+|+++ +.+.|.+.......................+++++... ...+|..
T Consensus 270 ~v~~l~lapGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~P~~------------- 334 (523)
T PRK10965 270 KVSELPILMGERFEVLVDTS-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISA-SGTLPDS------------- 334 (523)
T ss_pred EeCeEEECccceEEEEEEcC-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCC-CCcCChh-------------
Confidence 99999999999999999998 56889988764432211000111112333344332111 1112211
Q ss_pred ccCccCCCCCCCCCCCCCCceEEEEEEcc--C--ccc----CCCCCcccC---------C-C--------C----Cc-e-
Q 008366 335 SNITGLSGGPQWVPCPRRVDERMFVTVGL--G--LEQ----CPANATCQG---------P-F--------S----QR-L- 382 (568)
Q Consensus 335 ~~l~~~~~~~~~~~~p~~~d~~~~~~~~~--~--~~~----~~~~~~~~~---------~-~--------~----~~-~- 382 (568)
+..+... +. ......+++.+.+.. . .+. ........+ . . + .+ +
T Consensus 335 --l~~~~~~--~~-~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (523)
T PRK10965 335 --LASLPAL--PS-LEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFD 409 (523)
T ss_pred --hccCCCC--Cc-ccccceeEEEEeeccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence 1111000 00 000011222222210 0 000 000000000 0 0 0 00 0
Q ss_pred ---eeeecCcceeCCCchhhhhhhhhcCCCcccCCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEE
Q 008366 383 ---SASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQ 459 (568)
Q Consensus 383 ---~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~ 459 (568)
.|+|||++|.. ..+.+.+++|+++.|.|.
T Consensus 410 ~~~~~~ING~~~~~------------------------------------------------~~~~~~~~~G~~e~w~i~ 441 (523)
T PRK10965 410 FHHANKINGKAFDM------------------------------------------------NKPMFAAKKGQYERWVIS 441 (523)
T ss_pred ccccccCCCeECCC------------------------------------------------CCcceecCCCCEEEEEEE
Confidence 12444443311 114457899999999999
Q ss_pred eCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec----CceeEEEEeecc
Q 008366 460 NTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN----NPGVWFMHCHFD 535 (568)
Q Consensus 460 N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad----npG~w~~HCHil 535 (568)
|.+. .+.|||||||++|+|+++.. .+.....+.|||||.|++ +.+.|+++++ ++|.|||||||+
T Consensus 442 N~~~--~~~Hp~HlHg~~F~Vl~~~g---------~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL 509 (523)
T PRK10965 442 GVGD--MMLHPFHIHGTQFRILSENG---------KPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLL 509 (523)
T ss_pred eCCC--CCccCeEEeCcEEEEEEecC---------CCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCch
Confidence 9762 26899999999999999942 222234468999999988 6777776665 567999999999
Q ss_pred cccccccEEEEEEe
Q 008366 536 VHLPWGLATTFIVE 549 (568)
Q Consensus 536 ~H~d~GM~~~~~V~ 549 (568)
+|||.|||..|+|.
T Consensus 510 ~Hed~GMM~~~~V~ 523 (523)
T PRK10965 510 EHEDTGMMLGFTVS 523 (523)
T ss_pred hhhccCccceeEeC
Confidence 99999999999983
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.3e-69 Score=574.35 Aligned_cols=405 Identities=15% Similarity=0.211 Sum_probs=288.4
Q ss_pred EEEEEEEEEeeccC-ceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCC
Q 008366 27 EHSFQVKNLTIGRL-CRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIR 105 (568)
Q Consensus 27 ~~~~~~~~~~~~~~-G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~ 105 (568)
.++|+++....+.+ |....+|+|||++|||+||+++||+|+|+++|.|+++++|||||+++... ++||++ ++|.
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~----~~I~ 121 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA----RMMS 121 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc----ccCC
Confidence 37899999998888 57889999999999999999999999999999999999999999998876 467764 6799
Q ss_pred CCCeEEEEEEeCCCCCceeEecChhhhh----h-cceEEEEEecCCCCCCCCCC-C-CCceeEEEeecccCcHHHHHhhc
Q 008366 106 PGNSYTYKFRIINQEGTLWWHAHISMLR----A-TVHGAFIIRPKSGHKYPFPK-P-DKEVPIVLGEWWNDDIMDVANRG 178 (568)
Q Consensus 106 PG~~~~y~f~~~~~~Gt~~YH~h~~~~~----~-Gl~G~liV~~~~~~~~~~~~-~-~~e~~l~~~d~~~~~~~~~~~~~ 178 (568)
||++++|+|.+.+++||||||+|.++.+ . ||+|++||+++.+...+++. + ..|++|+++||..+........
T Consensus 122 PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~- 200 (471)
T PRK10883 122 PNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN- 200 (471)
T ss_pred CCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-
Confidence 9999999999856799999999987633 2 99999999988654444432 2 3489999999988764332111
Q ss_pred cccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEE-cCceeEEEEecCCCC-CcEEE
Q 008366 179 EITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKI-ANHKFTVVAVDAGYT-DPYVT 256 (568)
Q Consensus 179 ~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~~~ 256 (568)
........++.++|||+. .|.+++++| +|||||+|+++...+.|+| +||+|+|||.||..+ +|..+
T Consensus 201 -~~~~~g~~gd~~lvNG~~----------~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~~~ 268 (471)
T PRK10883 201 -EPGSGGFVGDTLLVNGVQ----------SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPVSV 268 (471)
T ss_pred -ccccCCccCCeeEECCcc----------CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCcEe
Confidence 111122457889999994 368899885 7999999999999999999 899999999998777 89999
Q ss_pred eEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCcc-ccCCCc---ceEEEEEEcCCCCCCCCCCCCCCCCCCCcccc
Q 008366 257 DVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTI-VAFDNT---TTRGIVVYDGASTANPIMPALPAYNDTPTAYT 332 (568)
Q Consensus 257 d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~-~~~~~~---~~~ail~y~~~~~~~~~~p~~~~~~~~~~~~~ 332 (568)
+.+.|.||||+||+|+++ ..+.+.+++.......... ..+... ....+++.......+ ..+ .+
T Consensus 269 ~~l~l~pGeR~dvlVd~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---------- 335 (471)
T PRK10883 269 KQLSLAPGERREILVDMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LVT-DN---------- 335 (471)
T ss_pred CeEEECCCCeEEEEEECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CCC-Cc----------
Confidence 999999999999999998 4456666553211000000 000000 011122222110000 000 00
Q ss_pred ccccCccCCCCCCCCCCCCCCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCccc
Q 008366 333 FYSNITGLSGGPQWVPCPRRVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYE 412 (568)
Q Consensus 333 ~~~~l~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~ 412 (568)
....+.. .. ..+....++..+.++. . .|.|||++|....
T Consensus 336 ~p~~l~~---~~---~~~~~~~~~~~~~l~~----------------~--~~~INg~~~~~~~----------------- 374 (471)
T PRK10883 336 LPMRLLP---DE---IMEGSPIRSREISLGD----------------D--LPGINGALWDMNR----------------- 374 (471)
T ss_pred CChhhcC---CC---CCCCCCcceEEEEecC----------------C--cCccCCcccCCCc-----------------
Confidence 0000000 00 0111222333322211 1 2467777662211
Q ss_pred CCCCCCCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCC
Q 008366 413 PNFPNQPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASR 492 (568)
Q Consensus 413 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~ 492 (568)
..+.+++|++++|.+.|. +.|||||||++|||++++.
T Consensus 375 -------------------------------~~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G------- 411 (471)
T PRK10883 375 -------------------------------IDVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNG------- 411 (471)
T ss_pred -------------------------------ceeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecC-------
Confidence 234689999999999874 6899999999999999942
Q ss_pred CCCCCcCCCCCceeeEEeCCCcEEEEEEEecCce----eEEEEeecccccccccEEEEEEec
Q 008366 493 DSKNFNLVNPQRRNTIAVPIGGWAVIRFRANNPG----VWFMHCHFDVHLPWGLATTFIVEN 550 (568)
Q Consensus 493 ~~~~~~~~~p~~rDTv~vp~~g~~~irf~adnpG----~w~~HCHil~H~d~GM~~~~~V~~ 550 (568)
.........|||||.|+ +.+.|+++++++| .|||||||++|||.|||..|.|.+
T Consensus 412 --~~~~~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 412 --AMPFPEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred --CCCCccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 11111234699999996 4699999999877 899999999999999999999964
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.4e-56 Score=473.69 Aligned_cols=409 Identities=28% Similarity=0.388 Sum_probs=289.8
Q ss_pred EEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCC
Q 008366 28 HSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPG 107 (568)
Q Consensus 28 ~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG 107 (568)
+.+..+.......+.....|+|||++|||+||+++||+|+|+++|.+.+.+++||||+..+ ..+||++..+++++.||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~ 113 (451)
T COG2132 36 FLTAQRAQLAFAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPG 113 (451)
T ss_pred EEeecccceeeecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCC
Confidence 3444444444555788999999999999999999999999999999888899999998777 44799999999999999
Q ss_pred CeEEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccccCCCCC
Q 008366 108 NSYTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPR 186 (568)
Q Consensus 108 ~~~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~ 186 (568)
++++|.|+. +.+||||||+|.+++.. ||+|++||++.+..+. ..|.+.++...+|+.......... .......
T Consensus 114 ~~~~y~f~~-~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~---~~d~~~~i~~~~~~~~~~~~~~~~--~~~~~~~ 187 (451)
T COG2132 114 ETPTYTFTQ-DVPGTYWYHPHTHGQVYDGLAGALIIEDENSEPL---GVDDEPVILQDDWLDEDGTDLYQE--GPAMGGF 187 (451)
T ss_pred CcEEEeecC-CCCcceEeccCCCchhhcccceeEEEeCCCCCCC---CCCceEEEEEeeeecCCCCccccC--CccccCC
Confidence 999999998 77889999999999776 9999999999876543 567778888888876654433322 1122234
Q ss_pred CCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCce
Q 008366 187 ISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQT 266 (568)
Q Consensus 187 ~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r 266 (568)
..+..+|||+.+ +.+.+.. .+|||||+|+++...+.+++.+++++|++.||.++.+..+|.+.|.||||
T Consensus 188 ~g~~~~vnG~~~----------p~~~~~~-g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er 256 (451)
T COG2132 188 PGDTLLVNGAIL----------PFKAVPG-GVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGER 256 (451)
T ss_pred CCCeEEECCCcc----------ceeecCC-CeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcce
Confidence 567899999733 4444444 56999999999888777888999999999999999889999999999999
Q ss_pred EEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCCCCCCCCCCCCCC---CccccccccCccCCCC
Q 008366 267 TDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDT---PTAYTFYSNITGLSGG 343 (568)
Q Consensus 267 ~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~~~~~~---~~~~~~~~~l~~~~~~ 343 (568)
+||++++. +.+.+.+.|....... ...+......... +..+..+.. ................
T Consensus 257 ~~v~v~~~-~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 321 (451)
T COG2132 257 YEVLVDMN-DGGAVTLTALGEDMPD---------TLKGFRAPNPILT-----PSYPVLNGRVGAPTGDMADHAPVGLLVT 321 (451)
T ss_pred EEEEEEcC-CCCeEEEEeccccCCc---------eeeeeeccccccc-----cccccccccccCCCcchhhccccccchh
Confidence 99999998 4788888887721111 1222222211111 000000000 0000000000000000
Q ss_pred CCCCCCCC-CCceEEEEEEccCcccCCCCCcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCCCCCCCCcc
Q 008366 344 PQWVPCPR-RVDERMFVTVGLGLEQCPANATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPNQPPVE 422 (568)
Q Consensus 344 ~~~~~~p~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~~~p~~ 422 (568)
... .+. ..++...+. .......|.+|+..|..
T Consensus 322 ~~~--~~~~~~~~~~~l~----------------~~~~~~~~~~n~~~~~~----------------------------- 354 (451)
T COG2132 322 ILV--EPGPNRDTDFHLI----------------GGIGGYVWAINGKAFDD----------------------------- 354 (451)
T ss_pred hcC--CCcccccccchhh----------------cccccccccccCccCCC-----------------------------
Confidence 000 000 000000000 00011123333332210
Q ss_pred cccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCC
Q 008366 423 FDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNP 502 (568)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p 502 (568)
....+.++.|++++|+|.|.+. +.||||+||+.|+|++.+ .......+
T Consensus 355 -------------------~~~~~~~~~G~~~~~~i~n~~~---~~HP~HlHg~~F~v~~~~----------~~~~~~~~ 402 (451)
T COG2132 355 -------------------NRVTLIAKAGTRERWVLTNDTP---MPHPFHLHGHFFQVLSGD----------APAPGAAP 402 (451)
T ss_pred -------------------CcCceeecCCCEEEEEEECCCC---CccCeEEcCceEEEEecC----------CCcccccC
Confidence 1255678999999999999765 999999999999999985 22223557
Q ss_pred CceeeEEeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEe
Q 008366 503 QRRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 503 ~~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
.||||+.+.++..++++|.+++||.|+||||+++|++.|||..+.|.
T Consensus 403 ~~kDTv~v~~~~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 403 GWKDTVLVAPGERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred ccceEEEeCCCeEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 89999999999999999999999999999999999999999999886
No 17
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=1.1e-46 Score=379.13 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=217.7
Q ss_pred cCCceEEEEEEEEEEeecc-CceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC--CCeeEEEccccccCCCCCCCCC
Q 008366 21 ASAAVVEHSFQVKNLTIGR-LCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP--YNITIHWHGIFQIRSIWADGPN 97 (568)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~-~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~--~~~~iH~HG~~~~~~~~~DG~~ 97 (568)
+...+++|+|++++...+. +|+...+|+|||++|||+|++++||+|+|+|+|.+. .++++||||.. ++||++
T Consensus 23 ~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~~ 97 (311)
T TIGR02376 23 SGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGGA 97 (311)
T ss_pred CCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCCC
Confidence 4678899999999999875 699999999999999999999999999999999985 68999999963 358887
Q ss_pred CcccccCCCCCeEEEEEEeCCCCCceeEecChhh----hhh-cceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHH
Q 008366 98 MITQCPIRPGNSYTYKFRIINQEGTLWWHAHISM----LRA-TVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIM 172 (568)
Q Consensus 98 ~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~----~~~-Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~ 172 (568)
.+++ |.||++++|+|++ +++||||||||.++ +.. ||+|+|||++++.. +.+|+|++|+++||+.+...
T Consensus 98 ~~~~--I~PG~t~ty~F~~-~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~----~~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 98 ALTQ--VNPGETATLRFKA-TRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGL----PEYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred ccee--ECCCCeEEEEEEc-CCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCC----cCcceeEEEeeeeEeccccc
Confidence 7776 9999999999998 89999999999654 444 99999999987532 26789999999999986532
Q ss_pred HHHhhcccc--CCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCC
Q 008366 173 DVANRGEIT--GVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGY 250 (568)
Q Consensus 173 ~~~~~~~~~--g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~ 250 (568)
......... ......++.++|||+.+++ .+.+++++|+++||||+|++....+.||++|+.+++++.||.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG~~ 243 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTGKF 243 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCC-------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECCcc
Confidence 211100000 0012356899999996642 2457999999999999999988888899999999999999999
Q ss_pred CCcE--EEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCC
Q 008366 251 TDPY--VTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGAS 312 (568)
Q Consensus 251 ~~p~--~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~ 312 (568)
+.+. .++++.|+||||+||+|+++ +||.|+++||....... ....++|+|++..
T Consensus 244 ~~~~~~~~~~~~i~PG~R~dv~v~~~-~pG~y~~~~~~~~~~~~-------~g~~~~i~~~g~~ 299 (311)
T TIGR02376 244 ANPPNRDVETWFIPGGSAAAALYTFE-QPGVYAYVDHNLIEAFE-------KGAAAQVKVEGAW 299 (311)
T ss_pred cCCCCCCcceEEECCCceEEEEEEeC-CCeEEEEECcHHHHHHh-------CCCEEEEEECCCC
Confidence 9653 48999999999999999999 58999999998765321 2478999998754
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=4.5e-34 Score=245.51 Aligned_cols=116 Identities=41% Similarity=0.770 Sum_probs=107.5
Q ss_pred EEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeE
Q 008366 31 QVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSY 110 (568)
Q Consensus 31 ~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~ 110 (568)
++++..+.++|..+.+|+|||++|||+||+++||+|+|+|+|.++++++|||||+++....|+||+++++||+|.||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 57888999998889999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCC
Q 008366 111 TYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKS 146 (568)
Q Consensus 111 ~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~ 146 (568)
+|+|++++++||||||||.+++.. ||+|+|||++++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~~ 117 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPPE 117 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-TT
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCCC
Confidence 999999555999999999998644 999999999864
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96 E-value=3.9e-29 Score=223.86 Aligned_cols=108 Identities=45% Similarity=0.785 Sum_probs=97.0
Q ss_pred CCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEE
Q 008366 439 PPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVI 518 (568)
Q Consensus 439 ~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~i 518 (568)
...+...+.++.|++|||+|+|.+. ..|||||||++|+|++++.+.++.. ....+++.+|.||||+.|+++++++|
T Consensus 29 ~~~~~~~~~~~~g~~v~~~l~N~~~---~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 29 FFGNTPVIEVKNGDVVEIVLQNNGS---MPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp SSSTTSEEEEETTSEEEEEEEECTT---SSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred cCCCcceEEEeCCCEEEEEEECCCC---CccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccceeEEEE
Confidence 4566689999999999999999776 8999999999999999987766544 45667889999999999999999999
Q ss_pred EEEecCceeEEEEeecccccccccEEEEEEec
Q 008366 519 RFRANNPGVWFMHCHFDVHLPWGLATTFIVEN 550 (568)
Q Consensus 519 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~~ 550 (568)
||+++|||.|+||||+++|++.|||+.|.|.+
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 99999999999999999999999999999874
No 20
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.93 E-value=2.3e-25 Score=203.84 Aligned_cols=150 Identities=38% Similarity=0.615 Sum_probs=120.6
Q ss_pred CceeEEEeecccCcHHHHHhhccccCC----CCCCCceEEEcCCCCCCCCCC-----CCceeEEEEEcCcEEEEEEEecc
Q 008366 157 KEVPIVLGEWWNDDIMDVANRGEITGV----GPRISDAFTINGMPGDLYPCS-----ENQTYKLKVEKGKTYLLRIINAA 227 (568)
Q Consensus 157 ~e~~l~~~d~~~~~~~~~~~~~~~~g~----~~~~~~~~~iNG~~g~~~~~~-----~~~~~~l~v~~G~~~rlRliN~~ 227 (568)
.|++|+++|||++....+..+....+. .+..++.++|||+ + .+.|+ +...+.+.+++|++|||||||++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~-~-~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~ 78 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGK-G-RFDCSSADYTGGEPPVIKVKPGERYRLRLINAG 78 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTB-T-CBTTCTTGSTTSTSGEEEEETTTEEEEEEEEES
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCc-c-ccccccccccccccceEEEcCCcEEEEEEEecc
Confidence 378999999999887776654433322 2668999999998 3 34454 24578999999999999999999
Q ss_pred CCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEE
Q 008366 228 LNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVV 307 (568)
Q Consensus 228 ~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~ 307 (568)
+...+.|+|+||+|+|||.||.+++|..++++.|.+||||||+|++++++|+|+|++........ ........|+|+
T Consensus 79 ~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g~y~i~~~~~~~~~~---~~~~~~~~aiL~ 155 (159)
T PF00394_consen 79 ASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPGNYWIRASYQHDSIN---DPQNGNALAILR 155 (159)
T ss_dssp SS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSSEEEEEEEESSSSSH---SHGGGTTEEEEE
T ss_pred CCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCCeEEEEEecccCCCc---cCCCcEEEEEEE
Confidence 99999999999999999999999999999999999999999999999769999999973222221 233457899999
Q ss_pred EcCC
Q 008366 308 YDGA 311 (568)
Q Consensus 308 y~~~ 311 (568)
|+++
T Consensus 156 Y~~~ 159 (159)
T PF00394_consen 156 YDGA 159 (159)
T ss_dssp ETTS
T ss_pred ECCC
Confidence 9873
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.76 E-value=3.6e-17 Score=177.08 Aligned_cols=232 Identities=14% Similarity=0.139 Sum_probs=150.8
Q ss_pred EEEECCCCCC--CeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCC
Q 008366 46 ITAVNGSLPG--PTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIIN 118 (568)
Q Consensus 46 ~~~~NG~~pG--P~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~ 118 (568)
.+++||+.+. +++.+++|+++|+||+|... ....+++.|+.+...+ .||.+- +....|.||||++..+++ .
T Consensus 248 ~~LiNG~~~~~~~~~~v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa-~DG~~v~Pv~vd~l~I~pGeRyDVlV~~-~ 325 (587)
T TIGR01480 248 TYLMNGTTPAGNWTGLFRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVA-VDGQYVHPVSVDEFRIAPAETFDVIVEP-T 325 (587)
T ss_pred eEEEcCccCCCCceEEECCCCEEEEEEEecCCCceEEEEECCCEEEEEE-cCCcCcCceEeCeEEEcCcceeEEEEec-C
Confidence 3789999863 58999999999999999975 4578899998887666 699652 345678999999999997 5
Q ss_pred CCCceeEecChhhhhhcceEEEEEecCC-CCCCC-CCCC----CCceeE------------EEee---cccC--------
Q 008366 119 QEGTLWWHAHISMLRATVHGAFIIRPKS-GHKYP-FPKP----DKEVPI------------VLGE---WWND-------- 169 (568)
Q Consensus 119 ~~Gt~~YH~h~~~~~~Gl~G~liV~~~~-~~~~~-~~~~----~~e~~l------------~~~d---~~~~-------- 169 (568)
..|.|+......+.. |...+.+..... ..+.| .... ..+.-. .... ..+.
T Consensus 326 ~~g~~~i~a~~~~~~-~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (587)
T TIGR01480 326 GDDAFTIFAQDSDRT-GYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAP 404 (587)
T ss_pred CCceEEEEEEecCCC-ceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCcccccccccc
Confidence 678999887654322 333333332211 11111 1000 000000 0000 0000
Q ss_pred -c-------------------------------------------HHHHH-hhcccc------CCCC-----------CC
Q 008366 170 -D-------------------------------------------IMDVA-NRGEIT------GVGP-----------RI 187 (568)
Q Consensus 170 -~-------------------------------------------~~~~~-~~~~~~------g~~~-----------~~ 187 (568)
+ ...+. ...+.. ...+ ..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~p~r~~~~~L~g~m~ 484 (587)
T TIGR01480 405 MDHSQMAMDASPKHPASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFPPPDGRAPGREIELHLTGNME 484 (587)
T ss_pred CccccccccccccCcccccCCccccccccCcccccCCCCcccccCCcceeehhhccccccccCcCCCCceEEEEEcCCCc
Confidence 0 00000 000000 0000 01
Q ss_pred CceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceE
Q 008366 188 SDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTT 267 (568)
Q Consensus 188 ~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~ 267 (568)
.-.|+|||+.+. ..+.+.++.|++|||||+|.+.+.| .||+|||.|.++..||.+ +...|++.|.|||++
T Consensus 485 ~~~wtiNG~~~~-------~~~pl~v~~Gervri~l~N~t~~~H-pmHlHG~~f~v~~~~G~~--~~~~dTv~V~Pg~t~ 554 (587)
T TIGR01480 485 RFAWSFDGEAFG-------LKTPLRFNYGERLRVVLVNDTMMAH-PIHLHGMWSELEDGQGEF--QVRKHTVDVPPGGKR 554 (587)
T ss_pred eeEEEECCccCC-------CCCceEecCCCEEEEEEECCCCCCc-ceeEcCceeeeecCCCcc--cccCCceeeCCCCEE
Confidence 114899999653 2356889999999999999886655 599999999999888863 333588999999999
Q ss_pred EEEEEeCCCCceeEEEEeeccCCC
Q 008366 268 DVLLKADQPVGSYYMAARAYAAPP 291 (568)
Q Consensus 268 dv~~~~~~~~g~y~~~~~~~~~~~ 291 (568)
++.|+++ +||.|++|||...+..
T Consensus 555 ~~~f~ad-~pG~w~~HCH~l~H~~ 577 (587)
T TIGR01480 555 SFRVTAD-ALGRWAYHCHMLLHME 577 (587)
T ss_pred EEEEECC-CCeEEEEcCCCHHHHh
Confidence 9999999 8999999999866554
No 22
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.71 E-value=1.6e-15 Score=153.07 Aligned_cols=240 Identities=17% Similarity=0.142 Sum_probs=151.7
Q ss_pred CceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCC-CeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCce
Q 008366 188 SDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALN-NQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQT 266 (568)
Q Consensus 188 ~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r 266 (568)
.+.+++||+. ..|.++++.|++++++|.|.... ..+.+|+|++. +.||... ...+.||++
T Consensus 47 ~~~~~~nG~~---------pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t 107 (311)
T TIGR02376 47 YQAMTFDGSV---------PGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGET 107 (311)
T ss_pred EEEEEECCcc---------cCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCe
Confidence 4578999993 45899999999999999998632 35678998874 3566421 234899999
Q ss_pred EEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCCCCCCCCCCCCCCCCCCCccccccccCccCCCCCCC
Q 008366 267 TDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGASTANPIMPALPAYNDTPTAYTFYSNITGLSGGPQW 346 (568)
Q Consensus 267 ~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (568)
+.+.|+++ .+|.||+|||....... .... +..+.|.++.... .| .
T Consensus 108 ~ty~F~~~-~~Gty~YH~H~~~~~~~--q~~~--Gl~G~liV~~~~~----~~---~----------------------- 152 (311)
T TIGR02376 108 ATLRFKAT-RPGAFVYHCAPPGMVPW--HVVS--GMNGAIMVLPREG----LP---E----------------------- 152 (311)
T ss_pred EEEEEEcC-CCEEEEEEcCCCCchhH--Hhhc--CcceEEEeeccCC----Cc---C-----------------------
Confidence 99999998 69999999995421000 0111 2333444443211 11 0
Q ss_pred CCCCCCCceEEEEEEc-cCcccC-------CCC-CcccCCCCCceeeeecCcceeCCCchhhhhhhhhcCCCcccCCCCC
Q 008366 347 VPCPRRVDERMFVTVG-LGLEQC-------PAN-ATCQGPFSQRLSASMNNHSFQAPTSLSILQAYFFNVGGVYEPNFPN 417 (568)
Q Consensus 347 ~~~p~~~d~~~~~~~~-~~~~~~-------~~~-~~~~~~~~~~~~~~~n~~s~~~p~~~~ll~~~~~~~~g~~~~~~~~ 417 (568)
.|+.+.+.+. +..... ..+ .... ....-.+.+||+....
T Consensus 153 ------~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iNG~~~~~------------------------ 200 (311)
T TIGR02376 153 ------YDKEYYIGESDLYTPKDEGEGGAYEDDVAAMR--TLTPTHVVFNGAVGAL------------------------ 200 (311)
T ss_pred ------cceeEEEeeeeEeccccccccccccchHHHHh--cCCCCEEEECCccCCC------------------------
Confidence 0111111000 000000 000 0000 0000123444432100
Q ss_pred CCCcccccCCCCCCCCccccCCCCCceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCC
Q 008366 418 QPPVEFDYTNTNVSNDMSLLFPPKTTSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNF 497 (568)
Q Consensus 418 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~ 497 (568)
.+...++.|++++|.|.|.+. ...+.||++|++|.++.......
T Consensus 201 -------------------------~~~~~v~~G~~~RlRiiNa~~--~~~~~~~~~g~~~~~v~~DG~~~--------- 244 (311)
T TIGR02376 201 -------------------------TGDNALTAGVGERVLFVHSQP--NRDSRPHLIGGHGDYVWVTGKFA--------- 244 (311)
T ss_pred -------------------------CCCcccccCCcEEEEEEcCCC--CCCCCCeEecCCceEEEECCccc---------
Confidence 012367889999999999753 47799999999999999832111
Q ss_pred cCCCCC-ceeeEEeCCCcEEEEEEEecCceeEEEEeeccccc-ccccEEEEEEecC
Q 008366 498 NLVNPQ-RRNTIAVPIGGWAVIRFRANNPGVWFMHCHFDVHL-PWGLATTFIVENG 551 (568)
Q Consensus 498 ~~~~p~-~rDTv~vp~~g~~~irf~adnpG~w~~HCHil~H~-d~GM~~~~~V~~~ 551 (568)
..+. ..|++.|.||+.+.|.++++.||.|++|||...|. ..|++++|+|+..
T Consensus 245 --~~~~~~~~~~~i~PG~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 245 --NPPNRDVETWFIPGGSAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred --CCCCCCcceEEECCCceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 1122 37899999999999999999999999999999988 7799999998643
No 23
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.69 E-value=2.4e-16 Score=140.62 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=82.5
Q ss_pred cCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC---CCeeEEEccccccCCCCCCCCCCcccccCCCC----Ce--
Q 008366 39 RLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP---YNITIHWHGIFQIRSIWADGPNMITQCPIRPG----NS-- 109 (568)
Q Consensus 39 ~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~---~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG----~~-- 109 (568)
..+....-+.++|. +||+|++++||+|+++|+|.+. ....||+||......+-+||++.++++++.|+ +.
T Consensus 36 ~~~~~~~~f~~~~~-~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~ 114 (148)
T TIGR03095 36 MPGPSMYSFEIHDL-KNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGY 114 (148)
T ss_pred CCCCCceeEEecCC-CCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccce
Confidence 34667778889994 5899999999999999999954 45667777776554444799999999998884 22
Q ss_pred EEEEEEeCCCCCceeEecChhhhhh-cceEEEEEe
Q 008366 110 YTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIR 143 (568)
Q Consensus 110 ~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~ 143 (568)
.++.|++ .++||||||||..++.. ||+|.|||+
T Consensus 115 ~~~tf~f-~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 115 TDFTYHF-STAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eEEEEEC-CCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 3556666 68999999999988887 999999995
No 24
>PRK10965 multicopper oxidase; Provisional
Probab=99.59 E-value=6.1e-14 Score=150.91 Aligned_cols=240 Identities=14% Similarity=0.088 Sum_probs=149.2
Q ss_pred ceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCeeEEE-ccccccCCCCCCCCCC-----cccccCCCCCeEEEE
Q 008366 41 CRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNITIHW-HGIFQIRSIWADGPNM-----ITQCPIRPGNSYTYK 113 (568)
Q Consensus 41 G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~iH~-HG~~~~~~~~~DG~~~-----~~~~~i~PG~~~~y~ 113 (568)
|.....+++||+. .|.+.++ |.++|+||.|... +...+.+ .|..+...+ .||.+. +....|.||||++..
T Consensus 209 g~~gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa-~DG~~l~~P~~v~~l~lapGeR~dvl 285 (523)
T PRK10965 209 GWFGDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA-SDGGLLAEPVKVSELPILMGERFEVL 285 (523)
T ss_pred CccCCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE-eCCCcccCccEeCeEEECccceEEEE
Confidence 3455788999997 5988885 6699999999964 5556776 565554444 598542 345678999999999
Q ss_pred EEeCCCCCceeEecChhhhhhcc--------eEEEEEec--CC-CCCC-----C---CCC----CCCceeEEEeecccC-
Q 008366 114 FRIINQEGTLWWHAHISMLRATV--------HGAFIIRP--KS-GHKY-----P---FPK----PDKEVPIVLGEWWND- 169 (568)
Q Consensus 114 f~~~~~~Gt~~YH~h~~~~~~Gl--------~G~liV~~--~~-~~~~-----~---~~~----~~~e~~l~~~d~~~~- 169 (568)
++. ...|.++...-..... |+ +-.+.+.. .. .... + .+. ..+...+.+..+...
T Consensus 286 v~~-~~~~~~~l~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~ 363 (523)
T PRK10965 286 VDT-SDGKAFDLVTLPVSQM-GMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMM 363 (523)
T ss_pred EEc-CCCceEEEEEecccCc-ccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchh
Confidence 998 6667777665321110 11 11222321 11 0000 0 000 012223322211000
Q ss_pred --------cHHHHHhh--------cc--------ccC----CC-CCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEE
Q 008366 170 --------DIMDVANR--------GE--------ITG----VG-PRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYL 220 (568)
Q Consensus 170 --------~~~~~~~~--------~~--------~~g----~~-~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~r 220 (568)
........ .. ..+ .. ......++|||+.++ ...+.++++.|++++
T Consensus 364 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~------~~~~~~~~~~G~~e~ 437 (523)
T PRK10965 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD------MNKPMFAAKKGQYER 437 (523)
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC------CCCcceecCCCCEEE
Confidence 00000000 00 000 00 000112489999764 135678999999999
Q ss_pred EEEEeccCCCeEEEEEcCceeEEEEecCCCCC---cEEEeEEEECCCceEEEEEEeCC---CCceeEEEEeeccCCCC
Q 008366 221 LRIINAALNNQLFFKIANHKFTVVAVDAGYTD---PYVTDVVVIAPGQTTDVLLKADQ---PVGSYYMAARAYAAPPP 292 (568)
Q Consensus 221 lRliN~~~~~~~~~~i~gh~~~via~DG~~~~---p~~~d~~~l~pg~r~dv~~~~~~---~~g~y~~~~~~~~~~~~ 292 (568)
|+|+|.+....+.|||||++|+|++.||.+.. +.++||+.|.+ ++++++++++. ++|.|.+|||...+.+.
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~~~HCHiL~Hed~ 514 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAYMAHCHLLEHEDT 514 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCCCEEEEeCchhhhcc
Confidence 99999986555669999999999999998764 35789999977 78999999873 46799999999888765
No 25
>PLN02835 oxidoreductase
Probab=99.59 E-value=2.1e-13 Score=147.38 Aligned_cols=255 Identities=14% Similarity=0.110 Sum_probs=158.9
Q ss_pred eeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCC
Q 008366 44 QTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIIN 118 (568)
Q Consensus 44 ~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~ 118 (568)
...+++||+.. |++++++|+++|+||.|... ....+|+.|..+.... .||.+- +....|.||||++..+++.+
T Consensus 191 ~d~~liNG~~~-~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~-~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQTQ-STFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVE-VEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEccccC-ceEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEE-ECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 47899999985 89999999999999999975 4678999999887665 699653 33456999999999999865
Q ss_pred CCCceeEecChhhhhh--cceEEEEEecCCCC--CCCCCC---CCC--c------eeEEEeecccCcHH---H-H-----
Q 008366 119 QEGTLWWHAHISMLRA--TVHGAFIIRPKSGH--KYPFPK---PDK--E------VPIVLGEWWNDDIM---D-V----- 174 (568)
Q Consensus 119 ~~Gt~~YH~h~~~~~~--Gl~G~liV~~~~~~--~~~~~~---~~~--e------~~l~~~d~~~~~~~---~-~----- 174 (568)
.+|.||...-...... ... +++.+..... ..+.+. .+. + ....+......... . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~-ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 347 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTAT-AVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITP 347 (539)
T ss_pred CCCcEEEEEEccccCCCcceE-EEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCC
Confidence 6799998853211111 222 3333332211 011110 000 0 00001100000000 0 0
Q ss_pred HhhccccCCCC--CCCceEEEcCCCCCCCC---------------CC-------CC-----ceeEEEEEcCcEEEEEEEe
Q 008366 175 ANRGEITGVGP--RISDAFTINGMPGDLYP---------------CS-------EN-----QTYKLKVEKGKTYLLRIIN 225 (568)
Q Consensus 175 ~~~~~~~g~~~--~~~~~~~iNG~~g~~~~---------------~~-------~~-----~~~~l~v~~G~~~rlRliN 225 (568)
........... .....+.+||.++.... |. .. ..-.+.++.|+++.|-|-|
T Consensus 348 ~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N 427 (539)
T PLN02835 348 TKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQN 427 (539)
T ss_pred CceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEEC
Confidence 00000000000 00135778988763100 00 00 1124567889999999999
Q ss_pred ccCCCeEEEEEcCceeEEEEe-cCCC----------CCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCCcc
Q 008366 226 AALNNQLFFKIANHKFTVVAV-DAGY----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTI 294 (568)
Q Consensus 226 ~~~~~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~ 294 (568)
.+...|. ||||||.|+|++. +|.. ..|...|++.+.++...-|.|.++ +||.|.+|||...+...
T Consensus 428 ~~~~~HP-~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aD-NPG~Wl~HCHi~~H~~~-- 503 (539)
T PLN02835 428 NEKTMQS-WHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLD-NQGMWNMRSAIWERQYL-- 503 (539)
T ss_pred CCCCCCC-CCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECc-CCEEeeeeecchhhhhc--
Confidence 8765554 9999999999987 5522 248889999999999999999999 99999999998765443
Q ss_pred ccCCCcceEEEEEEcCC
Q 008366 295 VAFDNTTTRGIVVYDGA 311 (568)
Q Consensus 295 ~~~~~~~~~ail~y~~~ 311 (568)
+..++++++..
T Consensus 504 ------Gm~~~~~V~~~ 514 (539)
T PLN02835 504 ------GQQFYLRVWNQ 514 (539)
T ss_pred ------ccEEEEEEccC
Confidence 34555666543
No 26
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.57 E-value=6.9e-13 Score=144.42 Aligned_cols=246 Identities=14% Similarity=0.099 Sum_probs=150.6
Q ss_pred eEEEECCCCC---------CCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCC----cccccCCCCCeE
Q 008366 45 TITAVNGSLP---------GPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSY 110 (568)
Q Consensus 45 ~~~~~NG~~p---------GP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~ 110 (568)
..+++||+.- -++|+|++|+++|+||.|... ....+|.+|..+...+ +||++- +....|.||||+
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa-~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVE-VDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEE-eCCcccCceEeCeEEecCCCEE
Confidence 6799999841 148999999999999999964 5578899999887665 699652 345679999999
Q ss_pred EEEEEeCCCCCceeEecChhhh-----hhcceEEEEEecC-CCCCCCCCC----CCC---ce----eE-EE--ee--ccc
Q 008366 111 TYKFRIINQEGTLWWHAHISML-----RATVHGAFIIRPK-SGHKYPFPK----PDK---EV----PI-VL--GE--WWN 168 (568)
Q Consensus 111 ~y~f~~~~~~Gt~~YH~h~~~~-----~~Gl~G~liV~~~-~~~~~~~~~----~~~---e~----~l-~~--~d--~~~ 168 (568)
+..+++.+.+|.||...+.... ......+++.+.. .....+... .+. .. .+ .+ .. ...
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 9999984558999998864311 1111223333322 211111000 000 00 00 00 00 000
Q ss_pred -CcHHH-HHhhccc---cC------CCCCCCceEEEcCCCCCCC---------------------------CC-CCC---
Q 008366 169 -DDIMD-VANRGEI---TG------VGPRISDAFTINGMPGDLY---------------------------PC-SEN--- 206 (568)
Q Consensus 169 -~~~~~-~~~~~~~---~g------~~~~~~~~~~iNG~~g~~~---------------------------~~-~~~--- 206 (568)
..... +...... .. ......-.+.|||.++..- .| ++.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 00000 0000000 00 0000011357788753100 00 000
Q ss_pred -------ceeEEEEEcCcEEEEEEEeccC--CCeEEEEEcCceeEEEEec-CCC-----------CCcEEEeEEEECCCc
Q 008366 207 -------QTYKLKVEKGKTYLLRIINAAL--NNQLFFKIANHKFTVVAVD-AGY-----------TDPYVTDVVVIAPGQ 265 (568)
Q Consensus 207 -------~~~~l~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pg~ 265 (568)
....+.++.|+++++.|.|.+. ...|.||||||+|+|++.. |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 1135788899999999999853 2245699999999999886 321 136778999999999
Q ss_pred eEEEEEEeCCCCceeEEEEeeccCCCC
Q 008366 266 TTDVLLKADQPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 266 r~dv~~~~~~~~g~y~~~~~~~~~~~~ 292 (568)
.+.|.|+++ +||.|.+|||...+...
T Consensus 486 ~vvirf~ad-NPG~W~~HCHi~~H~~~ 511 (539)
T TIGR03389 486 WAAIRFVAD-NPGVWFMHCHLEVHTTW 511 (539)
T ss_pred eEEEEEecC-CCeEEEEEecccchhhh
Confidence 999999999 99999999999887654
No 27
>PRK10883 FtsI repressor; Provisional
Probab=99.53 E-value=4.9e-13 Score=142.62 Aligned_cols=226 Identities=15% Similarity=0.143 Sum_probs=142.4
Q ss_pred ceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCC-CCeeEEE-ccccccCCCCCCCCCC-----cccccCCCCCeEEEE
Q 008366 41 CRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESP-YNITIHW-HGIFQIRSIWADGPNM-----ITQCPIRPGNSYTYK 113 (568)
Q Consensus 41 G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~-~~~~iH~-HG~~~~~~~~~DG~~~-----~~~~~i~PG~~~~y~ 113 (568)
|....++++||+. .|.|.|+.| ++|+||.|... +...+++ +|......+ .||... +.+..|.||||++..
T Consensus 206 g~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~vIa-~DGg~~~~P~~~~~l~l~pGeR~dvl 282 (471)
T PRK10883 206 GFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLHVIA-GDQGFLPAPVSVKQLSLAPGERREIL 282 (471)
T ss_pred CccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEEEEE-eCCCcccCCcEeCeEEECCCCeEEEE
Confidence 4557789999997 599999875 89999999975 5567888 666555554 586332 345678999999999
Q ss_pred EEeCCCCCceeEecChhh-hhhcceE------------EEEEecCCC---CCCCCCCCCCceeEEEeecccCcHHHHHhh
Q 008366 114 FRIINQEGTLWWHAHISM-LRATVHG------------AFIIRPKSG---HKYPFPKPDKEVPIVLGEWWNDDIMDVANR 177 (568)
Q Consensus 114 f~~~~~~Gt~~YH~h~~~-~~~Gl~G------------~liV~~~~~---~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~ 177 (568)
+++ .+.+.+.+++-... ....+.+ .+-+.+... ...+.+....... + ........ ..
T Consensus 283 Vd~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~--~---~~~~~~~~-~~ 355 (471)
T PRK10883 283 VDM-SNGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTDNLPMRLLPDE--I---MEGSPIRS-RE 355 (471)
T ss_pred EEC-CCCceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCCcCChhhcCCC--C---CCCCCcce-EE
Confidence 997 66667767653211 1011111 111111110 0000110000000 0 00000000 00
Q ss_pred ccccCCCCCCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCc---E
Q 008366 178 GEITGVGPRISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDP---Y 254 (568)
Q Consensus 178 ~~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~ 254 (568)
....+ +.++|||++|+ ...+.++++.|++++|+|.|. + .|.||||||.|+|++.||....+ .
T Consensus 356 ~~l~~------~~~~INg~~~~------~~~~~~~~~~g~~e~W~~~n~--~-~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 356 ISLGD------DLPGINGALWD------MNRIDVTAQQGTWERWTVRAD--M-PQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred EEecC------CcCccCCcccC------CCcceeecCCCCEEEEEEECC--C-CcCEeECCccEEEEEecCCCCCccccC
Confidence 00011 13469999764 133457899999999999886 3 45699999999999999986533 4
Q ss_pred EEeEEEECCCceEEEEEEeCCCCc---eeEEEEeeccCCCCc
Q 008366 255 VTDVVVIAPGQTTDVLLKADQPVG---SYYMAARAYAAPPPT 293 (568)
Q Consensus 255 ~~d~~~l~pg~r~dv~~~~~~~~g---~y~~~~~~~~~~~~~ 293 (568)
+.||+.+. +++.|.+++++..| .|.+|||.+++.+.+
T Consensus 421 wkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~G 460 (471)
T PRK10883 421 WKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRG 460 (471)
T ss_pred cCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccC
Confidence 57999994 47999999995333 799999999987753
No 28
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.43 E-value=1.3e-12 Score=112.54 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=83.7
Q ss_pred HHHHHHHhhccccCCceEEEEEEEE--EEee---ccCceeeeEE-EECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEE
Q 008366 9 ACALVVLASSTFASAAVVEHSFQVK--NLTI---GRLCRQQTIT-AVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHW 82 (568)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~G~~~~~~-~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~ 82 (568)
-++++||....+ .++.++|+++|. +..+ +..|+....| ++|+++..+.|+|++||+|+++++|..+.++.+-+
T Consensus 9 ~~~~~~~~~~~~-~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i 87 (135)
T TIGR03096 9 GFALGLLLMGTA-QAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI 87 (135)
T ss_pred HHHHHHhhccch-hhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE
Confidence 345555544443 778889999999 5554 4568888887 99999998899999999999999999765543333
Q ss_pred ccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhh
Q 008366 83 HGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISML 132 (568)
Q Consensus 83 HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~ 132 (568)
++. |. +..|.||++.+|+|.+ .++|+|||||..+..
T Consensus 88 ~~~---------gi----s~~I~pGet~TitF~a-dKpG~Y~y~C~~HP~ 123 (135)
T TIGR03096 88 DAY---------GI----SEVIKAGETKTISFKA-DKAGAFTIWCQLHPK 123 (135)
T ss_pred CCC---------Cc----ceEECCCCeEEEEEEC-CCCEEEEEeCCCCCh
Confidence 222 11 1358999999999998 999999999987753
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=6.5e-12 Score=134.46 Aligned_cols=238 Identities=20% Similarity=0.185 Sum_probs=154.9
Q ss_pred ceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCC----CcccccCCCCCeEEEEEE
Q 008366 41 CRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPN----MITQCPIRPGNSYTYKFR 115 (568)
Q Consensus 41 G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~f~ 115 (568)
|..+....+||+.. |.+.+..|. +++||.|.. .+...+++.|.+..... .||.+ .+.+..+.|||+++....
T Consensus 186 ~~~g~~~~vnG~~~-p~~~~~~g~-~rlRl~n~~~~~~~~~~~~~~~~~Vi~-~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAIL-PFKAVPGGV-VRLRLLNAGNARTYHLALGGGPLTVIA-VDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCcc-ceeecCCCe-EEEEEEecCCceEEEEEecCceEEEEE-eCCcCcCceeeeeEEecCcceEEEEEE
Confidence 67788889999663 555555555 999999998 67778888877776665 58866 566778999999999998
Q ss_pred eCCCCCceeEecChhhhhhcceEEEEEecCCCCCCCCCCCCCceeEEEeec-ccCcHHHHHhhccccC----C-----CC
Q 008366 116 IINQEGTLWWHAHISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEW-WNDDIMDVANRGEITG----V-----GP 185 (568)
Q Consensus 116 ~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~-~~~~~~~~~~~~~~~g----~-----~~ 185 (568)
. ...|++-+.+........+.+..-........ ....+........|- ...............+ . ..
T Consensus 263 ~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (451)
T COG2132 263 M-NDGGAVTLTALGEDMPDTLKGFRAPNPILTPS--YPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIGG 339 (451)
T ss_pred c-CCCCeEEEEeccccCCceeeeeeccccccccc--cccccccccCCCcchhhccccccchhhcCCCcccccccchhhcc
Confidence 7 66889999988732222222222211111000 001111111111110 0000000000000000 0 00
Q ss_pred CCCceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC--CcEEEeEEEECC
Q 008366 186 RISDAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT--DPYVTDVVVIAP 263 (568)
Q Consensus 186 ~~~~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~~~l~p 263 (568)
.....+.+||+.++. ....+.++.|+++||+|.|-+.+.|. ||+||+.|+|++.|.... .+..+|++.+.+
T Consensus 340 ~~~~~~~~n~~~~~~------~~~~~~~~~G~~~~~~i~n~~~~~HP-~HlHg~~F~v~~~~~~~~~~~~~~kDTv~v~~ 412 (451)
T COG2132 340 IGGYVWAINGKAFDD------NRVTLIAKAGTRERWVLTNDTPMPHP-FHLHGHFFQVLSGDAPAPGAAPGWKDTVLVAP 412 (451)
T ss_pred cccccccccCccCCC------CcCceeecCCCEEEEEEECCCCCccC-eEEcCceEEEEecCCCcccccCccceEEEeCC
Confidence 122458888886531 35788999999999999999985554 999999999999982222 457899999999
Q ss_pred CceEEEEEEeCCCCceeEEEEeeccCCCC
Q 008366 264 GQTTDVLLKADQPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 264 g~r~dv~~~~~~~~g~y~~~~~~~~~~~~ 292 (568)
++++.+.++++ .+|.|++|||...+...
T Consensus 413 ~~~~~v~~~a~-~~g~~~~HCH~l~H~~~ 440 (451)
T COG2132 413 GERLLVRFDAD-YPGPWMFHCHILEHEDN 440 (451)
T ss_pred CeEEEEEEeCC-CCCceEEeccchhHhhc
Confidence 99999999999 88999999999887654
No 30
>PLN02792 oxidoreductase
Probab=99.37 E-value=1.8e-10 Score=124.23 Aligned_cols=246 Identities=15% Similarity=0.133 Sum_probs=151.2
Q ss_pred eeeEEEECCCCC--CCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCC----CcccccCCCCCeEEEEEE
Q 008366 43 QQTITAVNGSLP--GPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPN----MITQCPIRPGNSYTYKFR 115 (568)
Q Consensus 43 ~~~~~~~NG~~p--GP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~f~ 115 (568)
....+++||+-. .++|.|++|+++++||.|... ....+++.|..+...+ .||.+ .+....|.||||++..++
T Consensus 178 ~~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~-~DG~~v~p~~~~~l~i~~GqRydVlV~ 256 (536)
T PLN02792 178 MPDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIE-VEGTHTVQSMYTSLDIHVGQTYSVLVT 256 (536)
T ss_pred CCCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEE-eCCccCCCcceeEEEEccCceEEEEEE
Confidence 457899999942 479999999999999999965 4578899898887665 69964 234567999999999999
Q ss_pred eCCCCCceeEecChhhh-hhcceEEEEEecCCCCCC---C-CCCC-CCceeEEE---eecccC------cHH--------
Q 008366 116 IINQEGTLWWHAHISML-RATVHGAFIIRPKSGHKY---P-FPKP-DKEVPIVL---GEWWND------DIM-------- 172 (568)
Q Consensus 116 ~~~~~Gt~~YH~h~~~~-~~Gl~G~liV~~~~~~~~---~-~~~~-~~e~~l~~---~d~~~~------~~~-------- 172 (568)
+.+.+|.||........ .....-+++.+....... + .+.. +.....-. .++... ...
T Consensus 257 a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 257 MDQPPQNYSIVVSTRFIAAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred cCCCCceEEEEEEeccCCCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 85557999987654211 111112444443321110 0 0000 00000000 000000 000
Q ss_pred HHHhhccccCC--CCCCCceEEEcCCCCCC----------CCCCC--------C----------ceeEEEEEcCcEEEEE
Q 008366 173 DVANRGEITGV--GPRISDAFTINGMPGDL----------YPCSE--------N----------QTYKLKVEKGKTYLLR 222 (568)
Q Consensus 173 ~~~~~~~~~g~--~~~~~~~~~iNG~~g~~----------~~~~~--------~----------~~~~l~v~~G~~~rlR 222 (568)
.+......... .....-.+.+||.++.. +..++ . ....+.++.|++|.+-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 00000000000 00001246688876531 00000 0 1235678889999999
Q ss_pred EEeccCCCeEEEEEcCceeEEEEec-C----------CCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCC
Q 008366 223 IINAALNNQLFFKIANHKFTVVAVD-A----------GYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPP 291 (568)
Q Consensus 223 liN~~~~~~~~~~i~gh~~~via~D-G----------~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~ 291 (568)
|-|.....| .||||||+|+||+.- | ++..|...|++.+.++.-.-|.|.++ +||-|.+|||...+..
T Consensus 417 iqn~~~~~H-P~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aD-NPGvW~~HCh~~~h~~ 494 (536)
T PLN02792 417 FQNREKIVQ-SYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALD-NVGMWNLRSQFWARQY 494 (536)
T ss_pred EECCCCCCC-CeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEee-CCEEEeeeEcchhccc
Confidence 999765544 599999999999741 1 12368889999999999999999999 9999999999766544
No 31
>PLN02991 oxidoreductase
Probab=99.37 E-value=2.2e-10 Score=123.56 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=148.3
Q ss_pred eeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCC-CeeEEEccccccCCCCCCCCC----CcccccCCCCCeEEEEEEeC
Q 008366 43 QQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPY-NITIHWHGIFQIRSIWADGPN----MITQCPIRPGNSYTYKFRII 117 (568)
Q Consensus 43 ~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~f~~~ 117 (568)
....+++||+...++++|++|+++|+||.|.... ...+++.|..+...+ .||.+ .+.+..|.||||++..+++.
T Consensus 189 ~~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~~~p~~~~~l~i~~GQRydvlv~a~ 267 (543)
T PLN02991 189 LPDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVE-VEGTHTIQTPFSSLDVHVGQSYSVLITAD 267 (543)
T ss_pred CCCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEE-eCCccccceeeeEEEEcCCcEEEEEEECC
Confidence 4578999999756899999999999999999754 568888888887665 69965 23456789999999999986
Q ss_pred CCCCceeEecChhhhhhcce-EEEEEecCCCC--CCCCCC--CCCceeEEEe---ecccC-----c-HH--------HHH
Q 008366 118 NQEGTLWWHAHISMLRATVH-GAFIIRPKSGH--KYPFPK--PDKEVPIVLG---EWWND-----D-IM--------DVA 175 (568)
Q Consensus 118 ~~~Gt~~YH~h~~~~~~Gl~-G~liV~~~~~~--~~~~~~--~~~e~~l~~~---d~~~~-----~-~~--------~~~ 175 (568)
+.+|.||.-.........+. -+++-++.... ..+.+. .+.+...-.. ++... . .. .+.
T Consensus 268 ~~~~~y~i~~~~~~~~~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 268 QPAKDYYIVVSSRFTSKILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCCcEEEEEeeccCCCCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 66788987643211111111 23344432211 001110 0010100000 00000 0 00 000
Q ss_pred hhccccC-CC-CCCCceEEEcCCCCCCC----------CCCC-----------------CceeEEEEEcCcEEEEEEEec
Q 008366 176 NRGEITG-VG-PRISDAFTINGMPGDLY----------PCSE-----------------NQTYKLKVEKGKTYLLRIINA 226 (568)
Q Consensus 176 ~~~~~~g-~~-~~~~~~~~iNG~~g~~~----------~~~~-----------------~~~~~l~v~~G~~~rlRliN~ 226 (568)
....... .. ......+.|||.++... ..++ ...-.+.++.|+++.+-|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 0000000 00 00012567888765310 0000 011245678888998988887
Q ss_pred cCCCeEEEEEcCceeEEEEecC-----------CCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 227 ALNNQLFFKIANHKFTVVAVDA-----------GYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 227 ~~~~~~~~~i~gh~~~via~DG-----------~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
....| .||||||.|+|++... ++..|...|++.|.++.-.-|.|.++ +||.|.+|||...
T Consensus 428 ~~~~H-P~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~W~~HCHi~~ 498 (543)
T PLN02991 428 EDIVQ-TWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLD-NVGMWNLRSELWE 498 (543)
T ss_pred CCCCC-CeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECC-CCEEeeeeeCccc
Confidence 65544 5999999999997531 12357889999999999999999999 9999999999853
No 32
>PLN02354 copper ion binding / oxidoreductase
Probab=99.36 E-value=1.3e-10 Score=126.10 Aligned_cols=241 Identities=13% Similarity=0.113 Sum_probs=149.0
Q ss_pred eeEEEECCCCC------CCeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEE
Q 008366 44 QTITAVNGSLP------GPTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTY 112 (568)
Q Consensus 44 ~~~~~~NG~~p------GP~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y 112 (568)
...++|||+.. -|+|++++|++.|+||.|... ....++..|..+.... .||++- +....|.||||++.
T Consensus 189 ~d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydV 267 (552)
T PLN02354 189 PDGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVE-MEGSHVLQNDYDSLDVHVGQCFSV 267 (552)
T ss_pred CCeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEE-eCCcccCCcceeEEEEccCceEEE
Confidence 36789999951 279999999999999999974 5677999998887665 699652 34466999999999
Q ss_pred EEEeCCCCCceeEecChhhhhh--cceEEEEEecCCCC----CCCCCCCCC--------ceeEEEeecccCcH--H----
Q 008366 113 KFRIINQEGTLWWHAHISMLRA--TVHGAFIIRPKSGH----KYPFPKPDK--------EVPIVLGEWWNDDI--M---- 172 (568)
Q Consensus 113 ~f~~~~~~Gt~~YH~h~~~~~~--Gl~G~liV~~~~~~----~~~~~~~~~--------e~~l~~~d~~~~~~--~---- 172 (568)
.+++.+.+|.||.......... ... +++.+..... ..|....+. +....+......+. .
T Consensus 268 lv~a~~~~g~Y~i~a~~~~~~~~~~~~-ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~ 346 (552)
T PLN02354 268 LVTANQAPKDYYMVASTRFLKKVLTTT-GIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHY 346 (552)
T ss_pred EEECCCCCCcEEEEEeccccCCCccEE-EEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccc
Confidence 9998556899999877422111 222 3444432211 011100000 00000000000000 0
Q ss_pred ---HHHhhc-cccCC-CCCCCceEEEcCCCCCCC----------CCC-C-------------------CceeEEEEEcCc
Q 008366 173 ---DVANRG-EITGV-GPRISDAFTINGMPGDLY----------PCS-E-------------------NQTYKLKVEKGK 217 (568)
Q Consensus 173 ---~~~~~~-~~~g~-~~~~~~~~~iNG~~g~~~----------~~~-~-------------------~~~~~l~v~~G~ 217 (568)
.+.... ..... .......+.|||.++... ... + ...-.+.++.|+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~ 426 (552)
T PLN02354 347 GKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRT 426 (552)
T ss_pred ccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCC
Confidence 000000 00000 000012467888765200 000 0 011246778899
Q ss_pred EEEEEEEeccCCCeEEEEEcCceeEEEEecC-----------CCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008366 218 TYLLRIINAALNNQLFFKIANHKFTVVAVDA-----------GYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 286 (568)
Q Consensus 218 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG-----------~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~ 286 (568)
++.+-|.|.....| .||||||+|+|++.-- ++..|...|++.+.++.-.-+.|+++ +||.|.+|||.
T Consensus 427 ~VeiVi~n~~~~~H-P~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPGvW~~HCHi 504 (552)
T PLN02354 427 FVEIIFENHEKSMQ-SWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFD-NAGMWNIRSEN 504 (552)
T ss_pred EEEEEEeCCCCCCC-CCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEec-CCeEEeeeccc
Confidence 99999999865545 4999999999996532 11258889999999999999999999 99999999999
Q ss_pred cc
Q 008366 287 YA 288 (568)
Q Consensus 287 ~~ 288 (568)
..
T Consensus 505 ~~ 506 (552)
T PLN02354 505 WE 506 (552)
T ss_pred cc
Confidence 54
No 33
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=99.35 E-value=9.1e-11 Score=127.83 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=142.1
Q ss_pred eEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCCCC-CceeEecChh
Q 008366 57 TIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIINQE-GTLWWHAHIS 130 (568)
Q Consensus 57 ~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~~~-Gt~~YH~h~~ 130 (568)
.|.|++|+++|+||.|.. .....++++|..+...+ .||.+- +....|.||||++..+++.+.+ |.||...-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa-~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVE-ADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEEEEE-eCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999996 46778888888887666 699552 3456799999999999984334 5899986544
Q ss_pred hhhh--cceEEEEEecCCCC-CCC-C-----CCCCC-c----eeE-EEeec-ccCcHHHHHhhc--cccCCCCCCCceEE
Q 008366 131 MLRA--TVHGAFIIRPKSGH-KYP-F-----PKPDK-E----VPI-VLGEW-WNDDIMDVANRG--EITGVGPRISDAFT 192 (568)
Q Consensus 131 ~~~~--Gl~G~liV~~~~~~-~~~-~-----~~~~~-e----~~l-~~~d~-~~~~~~~~~~~~--~~~g~~~~~~~~~~ 192 (568)
+... ....+++.+..... ..+ . +..+. . ..+ .+... ............ ...+........+.
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAIKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWA 362 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhhhccccCCCCCCCCCcEEEEeccCcccCceEEEE
Confidence 3311 11235555432211 100 0 00000 0 000 00000 000000000000 00000000112367
Q ss_pred EcCCCCCC-------------------------CCCC-------C-----CceeEEEEEcCcEEEEEEEeccC-----CC
Q 008366 193 INGMPGDL-------------------------YPCS-------E-----NQTYKLKVEKGKTYLLRIINAAL-----NN 230 (568)
Q Consensus 193 iNG~~g~~-------------------------~~~~-------~-----~~~~~l~v~~G~~~rlRliN~~~-----~~ 230 (568)
+||.++.. +.+. . ...-.+.++.|++|.+.|.|... ..
T Consensus 363 ~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~ 442 (541)
T TIGR03388 363 INNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSE 442 (541)
T ss_pred ECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCC
Confidence 88876520 0000 0 00124788899999999999753 23
Q ss_pred eEEEEEcCceeEEEEec-CCC-----------CCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCC
Q 008366 231 QLFFKIANHKFTVVAVD-AGY-----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 231 ~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~ 292 (568)
.|.||+|||+|+|++.. |.+ ..|...|++.+.++.-+-|.|.++ +||.|.+|||...+...
T Consensus 443 ~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad-NPG~W~~HCHi~~H~~~ 515 (541)
T TIGR03388 443 THPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD-NPGVWAFHCHIEPHLHM 515 (541)
T ss_pred CCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC-CCeEeeeeccchhhhhc
Confidence 45699999999999986 332 137778999999999999999999 99999999999887654
No 34
>PLN02168 copper ion binding / pectinesterase
Probab=99.33 E-value=1.8e-10 Score=124.43 Aligned_cols=241 Identities=17% Similarity=0.177 Sum_probs=148.3
Q ss_pred eeEEEECCCCC-CCeEEEecCCEEEEEEEeCCCC-CeeEEEccccccCCCCCCCCC----CcccccCCCCCeEEEEEEeC
Q 008366 44 QTITAVNGSLP-GPTIRVQEGDTLIVHVSNESPY-NITIHWHGIFQIRSIWADGPN----MITQCPIRPGNSYTYKFRII 117 (568)
Q Consensus 44 ~~~~~~NG~~p-GP~i~v~~Gd~v~i~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~----~~~~~~i~PG~~~~y~f~~~ 117 (568)
...+++||+.+ .|+|++++|+++|+||.|.... ...++..|..+...+ .||.+ .+.+..|.||||++..+++.
T Consensus 188 ~d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa-~DG~~v~p~~~~~l~i~~GqRydvlv~a~ 266 (545)
T PLN02168 188 PDGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVE-TEGTYVQKRVYSSLDIHVGQSYSVLVTAK 266 (545)
T ss_pred CCEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEE-ECCeECCCceeeEEEEcCCceEEEEEEcC
Confidence 46789999963 4899999999999999999654 577888888887765 69954 23456799999999999985
Q ss_pred CCC-C---ceeEecChhhhhh-cceEEEEEecCCCC--CCCCCC-CC-Cce------eEEEe-ecc---cCc-HH-----
Q 008366 118 NQE-G---TLWWHAHISMLRA-TVHGAFIIRPKSGH--KYPFPK-PD-KEV------PIVLG-EWW---NDD-IM----- 172 (568)
Q Consensus 118 ~~~-G---t~~YH~h~~~~~~-Gl~G~liV~~~~~~--~~~~~~-~~-~e~------~l~~~-d~~---~~~-~~----- 172 (568)
+++ | .||...-...... .-..+++.+..... ..|.+. +. .+. .+.+. ... ... ..
T Consensus 267 ~~~~g~~~~Y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 346 (545)
T PLN02168 267 TDPVGIYRSYYIVATARFTDAYLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYHY 346 (545)
T ss_pred CCCCCCcceEEEEEEecccCCCcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCcccccc
Confidence 343 4 7998765421111 11134555543211 011110 00 010 00000 000 000 00
Q ss_pred ---HHHhhccccCCC--CCCCceEEEcCCCCCC----------CC----C-CC---C---------ceeEEEEEcCcEEE
Q 008366 173 ---DVANRGEITGVG--PRISDAFTINGMPGDL----------YP----C-SE---N---------QTYKLKVEKGKTYL 220 (568)
Q Consensus 173 ---~~~~~~~~~g~~--~~~~~~~~iNG~~g~~----------~~----~-~~---~---------~~~~l~v~~G~~~r 220 (568)
.+.......... ......+.+||.++.. +. . .+ . ..-.+.++.|++|.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~Ve 426 (545)
T PLN02168 347 GRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFYH 426 (545)
T ss_pred cccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEEE
Confidence 000000000000 0001357789887631 00 0 00 0 12346788899999
Q ss_pred EEEEeccCCCeEEEEEcCceeEEEEe-----cC------CCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008366 221 LRIINAALNNQLFFKIANHKFTVVAV-----DA------GYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (568)
Q Consensus 221 lRliN~~~~~~~~~~i~gh~~~via~-----DG------~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~ 287 (568)
+-|-|.....| .||||||.|+||+. |+ ++..|...|++.+.++.-+-|.|+++ +||.|.+|||..
T Consensus 427 iViqn~~~~~H-P~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aD-NPG~Wl~HCHi~ 502 (545)
T PLN02168 427 IVFQNPLFSLE-SYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMD-NQGMWNVRSQKA 502 (545)
T ss_pred EEEeCCCCCCC-CeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEcc-CCeEEeeeecCc
Confidence 98988765444 59999999999976 11 22368889999999999999999999 999999999963
No 35
>PLN02604 oxidoreductase
Probab=99.32 E-value=1.3e-10 Score=127.05 Aligned_cols=234 Identities=15% Similarity=0.121 Sum_probs=141.6
Q ss_pred CeEEEecCCEEEEEEEeCCC-CCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCCCCC-ceeEecCh
Q 008366 56 PTIRVQEGDTLIVHVSNESP-YNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIINQEG-TLWWHAHI 129 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~-~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~~~G-t~~YH~h~ 129 (568)
++|.+++|+++|+||.|... ....+++.|..+...+ .||.+- +....|.||||++..+++.+.+| .||.....
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa-~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVE-ADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEE-eCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 48999999999999999964 5677888888877666 699552 34567899999999999844445 79988543
Q ss_pred hhhh---hcceEEEEEecCCC--CCCCCCCC----CCceeEEEeecc---------cCcHHHHHhhc--cccCCCCCCCc
Q 008366 130 SMLR---ATVHGAFIIRPKSG--HKYPFPKP----DKEVPIVLGEWW---------NDDIMDVANRG--EITGVGPRISD 189 (568)
Q Consensus 130 ~~~~---~Gl~G~liV~~~~~--~~~~~~~~----~~e~~l~~~d~~---------~~~~~~~~~~~--~~~g~~~~~~~ 189 (568)
.... ..- .+++.+.... ...+...+ ..+....+.... ........... ..........-
T Consensus 303 ~~~~~~~~~~-~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 381 (566)
T PLN02604 303 VSRNNTTPPG-LAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGYR 381 (566)
T ss_pred ccCCCCCcce-eEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCeE
Confidence 2211 111 2444443221 10010000 000000000000 00000000000 00000000112
Q ss_pred eEEEcCCCCCCCC---------------CCC-----------------------CceeEEEEEcCcEEEEEEEeccC---
Q 008366 190 AFTINGMPGDLYP---------------CSE-----------------------NQTYKLKVEKGKTYLLRIINAAL--- 228 (568)
Q Consensus 190 ~~~iNG~~g~~~~---------------~~~-----------------------~~~~~l~v~~G~~~rlRliN~~~--- 228 (568)
.+.|||.++.... |.. ...-.+.++.|++|.+.|.|...
T Consensus 382 ~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~ 461 (566)
T PLN02604 382 RWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNA 461 (566)
T ss_pred EEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccC
Confidence 5778887652100 000 01124788999999999999853
Q ss_pred --CCeEEEEEcCceeEEEEec-CCC-----------CCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccCCCC
Q 008366 229 --NNQLFFKIANHKFTVVAVD-AGY-----------TDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 229 --~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~ 292 (568)
...|.||+|||+|+|++.. |.+ ..|...|++.+.++.-+-|.|.++ +||.|.+|||...+...
T Consensus 462 ~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aD-NPG~WlfHCHI~~Hl~~ 538 (566)
T PLN02604 462 NNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRAD-NPGVWAFHCHIESHFFM 538 (566)
T ss_pred CCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECC-CCeEeeEeecchhHhhc
Confidence 2346699999999999987 432 136778999999999999999999 99999999998777653
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=99.30 E-value=2e-10 Score=124.80 Aligned_cols=244 Identities=15% Similarity=0.121 Sum_probs=147.6
Q ss_pred eEEEECCCC---------------CCCeEEEecCCEEEEEEEeCCCC-CeeEEEcccc-ccCCCCCCCCCC----ccccc
Q 008366 45 TITAVNGSL---------------PGPTIRVQEGDTLIVHVSNESPY-NITIHWHGIF-QIRSIWADGPNM----ITQCP 103 (568)
Q Consensus 45 ~~~~~NG~~---------------pGP~i~v~~Gd~v~i~l~N~l~~-~~~iH~HG~~-~~~~~~~DG~~~----~~~~~ 103 (568)
..+++||+. ..|+|+|++|+++|+||.|.... ...+++.|.. +...+ +||..- +....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa-~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIE-ADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEE-eCCCCCCceEeCeEE
Confidence 568899984 12789999999999999999754 5678888887 66655 699642 33456
Q ss_pred CCCCCeEEEEEEeCCC-------CCceeEecChhhhhhcce-EEEEEec-CCCCCCC---CC---CC------CCceeEE
Q 008366 104 IRPGNSYTYKFRIINQ-------EGTLWWHAHISMLRATVH-GAFIIRP-KSGHKYP---FP---KP------DKEVPIV 162 (568)
Q Consensus 104 i~PG~~~~y~f~~~~~-------~Gt~~YH~h~~~~~~Gl~-G~liV~~-~~~~~~~---~~---~~------~~e~~l~ 162 (568)
|.||||++..+++.+. +|.||...-.......+. -+++.+. ......+ .. .. ..+..|.
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~ 330 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYRGYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYELE 330 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcceEEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheeeE
Confidence 9999999999998432 488987653221111111 2344442 1111111 00 00 0111111
Q ss_pred EeecccC-----c-HHHHHhhc-cccCCC--C-CCCceEEEcCCCCCCC-CC--------------------------CC
Q 008366 163 LGEWWND-----D-IMDVANRG-EITGVG--P-RISDAFTINGMPGDLY-PC--------------------------SE 205 (568)
Q Consensus 163 ~~d~~~~-----~-~~~~~~~~-~~~g~~--~-~~~~~~~iNG~~g~~~-~~--------------------------~~ 205 (568)
.+... . ........ ...+.. . .....+++||.++..- .. ..
T Consensus 331 --pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 408 (538)
T TIGR03390 331 --PLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFD 408 (538)
T ss_pred --ecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcC
Confidence 00000 0 00000000 000000 0 1123578898866420 00 00
Q ss_pred CceeEEEEEcCcEEEEEEEecc-------CCCeEEEEEcCceeEEEEe-cCCC-----------CCcEEEeEEEEC----
Q 008366 206 NQTYKLKVEKGKTYLLRIINAA-------LNNQLFFKIANHKFTVVAV-DAGY-----------TDPYVTDVVVIA---- 262 (568)
Q Consensus 206 ~~~~~l~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~p~~~d~~~l~---- 262 (568)
...-.+.++.|+++++.|.|.. ....+.||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 409 ~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~ 488 (538)
T TIGR03390 409 PETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV 488 (538)
T ss_pred cCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc
Confidence 0112567889999999999974 2345669999999999985 4532 247789999984
Q ss_pred ------CCceEEEEEEeCCCCceeEEEEeeccCCCC
Q 008366 263 ------PGQTTDVLLKADQPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 263 ------pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~ 292 (568)
++.-+.|.+.++ +||.|.+|||...+...
T Consensus 489 ~~~~~~~~~~~~ir~~~d-NPG~W~~HCHi~~H~~~ 523 (538)
T TIGR03390 489 KVVPGAPAGWRAWRIRVT-NPGVWMMHCHILQHMVM 523 (538)
T ss_pred cccccCCCceEEEEEEcC-CCeeEEEeccchhhhhc
Confidence 778889999998 99999999999777654
No 37
>PLN02191 L-ascorbate oxidase
Probab=99.12 E-value=6.8e-09 Score=113.48 Aligned_cols=241 Identities=13% Similarity=0.107 Sum_probs=141.9
Q ss_pred EECCCCCCCeEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCCCC-C
Q 008366 48 AVNGSLPGPTIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIINQE-G 121 (568)
Q Consensus 48 ~~NG~~pGP~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~~~-G 121 (568)
.+||+.--+++.+++|++.++||.|.. .....+++.|..+...+ .||.+- +....|.||||++..+++.+.+ +
T Consensus 218 ~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa-~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~ 296 (574)
T PLN02191 218 KEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVE-ADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQ 296 (574)
T ss_pred ccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEE-cCCeeccceEeeeEEEcCCCeEEEEEECCCCCCC
Confidence 345543223799999999999999996 45667888888877666 699653 3456799999999999984445 4
Q ss_pred ceeEecChhhhh----hcceEEEEEecCCCC-CCCC------CCCCC-----ceeE-EEeecc-cCcHHHH-Hhhc-ccc
Q 008366 122 TLWWHAHISMLR----ATVHGAFIIRPKSGH-KYPF------PKPDK-----EVPI-VLGEWW-NDDIMDV-ANRG-EIT 181 (568)
Q Consensus 122 t~~YH~h~~~~~----~Gl~G~liV~~~~~~-~~~~------~~~~~-----e~~l-~~~d~~-~~~~~~~-~~~~-~~~ 181 (568)
.||-..-..... .++ +++-+..... ..+. +..+. .... .+.... .+..... .... ...
T Consensus 297 ~y~ira~~~~~~~~~~~~~--ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 374 (574)
T PLN02191 297 NYYISVGVRGRKPNTTQAL--TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNT 374 (574)
T ss_pred CEEEEEEccccCCCCCCce--EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecc
Confidence 899876433211 132 4444422111 0010 00000 0000 000000 0000000 0000 000
Q ss_pred CCCCCCCceEEEcCCCCCCCC-----------------------------------CC--CCceeEEEEEcCcEEEEEEE
Q 008366 182 GVGPRISDAFTINGMPGDLYP-----------------------------------CS--ENQTYKLKVEKGKTYLLRII 224 (568)
Q Consensus 182 g~~~~~~~~~~iNG~~g~~~~-----------------------------------~~--~~~~~~l~v~~G~~~rlRli 224 (568)
.........+.+||.++.... |. ....-.+.++.|+++.+-|.
T Consensus 375 ~~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~ 454 (574)
T PLN02191 375 QNLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQ 454 (574)
T ss_pred cceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEE
Confidence 000001124667776542000 00 00112456777999999999
Q ss_pred ecc-----CCCeEEEEEcCceeEEEEecCC------------CCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008366 225 NAA-----LNNQLFFKIANHKFTVVAVDAG------------YTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (568)
Q Consensus 225 N~~-----~~~~~~~~i~gh~~~via~DG~------------~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~ 287 (568)
|.. ....|.||+|||+|+||+..-. +..|...|++.+.++.-.-|.|.++ +||.|.+|||..
T Consensus 455 n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aD-NPG~Wl~HCHi~ 533 (574)
T PLN02191 455 NANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTD-NPGVWFFHCHIE 533 (574)
T ss_pred CCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECC-CCEEEEEecCch
Confidence 875 2334569999999999965432 1247788999999999999999999 999999999998
Q ss_pred cCCCC
Q 008366 288 AAPPP 292 (568)
Q Consensus 288 ~~~~~ 292 (568)
.+...
T Consensus 534 ~Hl~~ 538 (574)
T PLN02191 534 PHLHM 538 (574)
T ss_pred hhhhc
Confidence 77654
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.03 E-value=1.7e-09 Score=96.46 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=74.5
Q ss_pred ceeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC-----------CcEEEeEEEECCCceEEEEEEeCC
Q 008366 207 QTYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT-----------DPYVTDVVVIAPGQTTDVLLKADQ 275 (568)
Q Consensus 207 ~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-----------~p~~~d~~~l~pg~r~dv~~~~~~ 275 (568)
....+.++.|++++|+|.|.+.. .+.||+|||.|+|++.++... .|...|++.|.+|+++.+.++++
T Consensus 32 ~~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~- 109 (138)
T PF07731_consen 32 NTPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD- 109 (138)
T ss_dssp TTSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-
T ss_pred CcceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-
Confidence 45799999999999999998866 445999999999999999873 57889999999999999999998
Q ss_pred CCceeEEEEeeccCCC
Q 008366 276 PVGSYYMAARAYAAPP 291 (568)
Q Consensus 276 ~~g~y~~~~~~~~~~~ 291 (568)
+||.|.+|||......
T Consensus 110 ~~G~w~~HCHi~~H~~ 125 (138)
T PF07731_consen 110 NPGPWLFHCHILEHED 125 (138)
T ss_dssp STEEEEEEESSHHHHH
T ss_pred cceEEEEEEchHHHHh
Confidence 8999999999976554
No 39
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=99.01 E-value=7e-08 Score=105.03 Aligned_cols=231 Identities=17% Similarity=0.179 Sum_probs=136.3
Q ss_pred CeEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCCC----cccccCCCCCeEEEEEEeCCCCC-ceeEecCh
Q 008366 56 PTIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPNM----ITQCPIRPGNSYTYKFRIINQEG-TLWWHAHI 129 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~~----~~~~~i~PG~~~~y~f~~~~~~G-t~~YH~h~ 129 (568)
++|.|++|++.++||.|.. .....++..|..+.... .||..- +....|.||||++.-+++.+.+| .||.-...
T Consensus 217 ~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa-~DG~~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~ 295 (596)
T PLN00044 217 ERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVE-AEGSYTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASA 295 (596)
T ss_pred ceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEE-eCCcccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEec
Confidence 5899999999999999996 45667888888877665 699542 34567999999999999844445 79885432
Q ss_pred h--hh--hhcceE-EEEEecCCCC----CCCC-CCCCCceeE------EEe-----ecccCcH---HH---H-Hhhcc-c
Q 008366 130 S--ML--RATVHG-AFIIRPKSGH----KYPF-PKPDKEVPI------VLG-----EWWNDDI---MD---V-ANRGE-I 180 (568)
Q Consensus 130 ~--~~--~~Gl~G-~liV~~~~~~----~~~~-~~~~~e~~l------~~~-----d~~~~~~---~~---~-~~~~~-~ 180 (568)
. .. ..-..| +|+-+..... +.|. +....+... .+. ....... .. + +.... .
T Consensus 296 ~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 375 (596)
T PLN00044 296 RFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLL 375 (596)
T ss_pred ccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeee
Confidence 1 11 111112 3444432111 1111 100011100 000 0000000 00 0 00000 0
Q ss_pred cCC-CCCC--CceEEEcCCCCCC----------CCCCC-------C---------ceeEEEEEcCcEEEEEEEeccCCCe
Q 008366 181 TGV-GPRI--SDAFTINGMPGDL----------YPCSE-------N---------QTYKLKVEKGKTYLLRIINAALNNQ 231 (568)
Q Consensus 181 ~g~-~~~~--~~~~~iNG~~g~~----------~~~~~-------~---------~~~~l~v~~G~~~rlRliN~~~~~~ 231 (568)
.+. ...+ .-.+++||.++.. +..++ . ......++.+++|.+-|-|.... .
T Consensus 376 ~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~-~ 454 (596)
T PLN00044 376 QSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFPNHPMNRLPKLDTSIINGTYKGFMEIIFQNNATN-V 454 (596)
T ss_pred ccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCCCCCCccccccCceEEEcCCCCEEEEEEeCCCCC-C
Confidence 000 0000 1246788876431 11111 0 23356778899999999987534 4
Q ss_pred EEEEEcCceeEEEEecC-----------CCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccC
Q 008366 232 LFFKIANHKFTVVAVDA-----------GYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAA 289 (568)
Q Consensus 232 ~~~~i~gh~~~via~DG-----------~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~ 289 (568)
+.||||||.|.||+... +++.|...|++.+.+|.-.-|.|.++ +||.|.+|||...+
T Consensus 455 HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aD-NPG~W~lHCH~~~h 522 (596)
T PLN00044 455 QSYHLDGYAFFVVGMDYGLWTDNSRGTYNKWDGVARSTIQVFPGAWTAILVFLD-NAGIWNLRVENLDA 522 (596)
T ss_pred CCeeEcCccEEEEeecCCCCCCCcccccccCCCCccceEEeCCCCeEEEEEecC-CCEEehhhccCchh
Confidence 55999999999996543 22358889999999999999999999 99999999995444
No 40
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.74 E-value=1.7e-08 Score=86.93 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=69.2
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
++++++.|+.|++.+.|... ..+.+|+||.+.- .. .+. +...... .-.|+||+..+-+|+++
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~---~~~siH~HG~~~~--~~---~~~---DG~~~~~-------~~~i~pG~~~~Y~~~~~ 87 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLD---EPTSIHWHGLHQP--PS---PWM---DGVPGVT-------QCPIAPGESFTYEFTAN 87 (117)
T ss_dssp EEEEEETTEEEEEEEEEESS---SGBSEEEETSBST--TG---GGG---SGGTTTS-------GSSBSTTEEEEEEEEES
T ss_pred CEEEEEcCCeeEEEEEeccc---cccccccceeeee--ee---eec---CCccccc-------ceeEEeecceeeeEeee
Confidence 88999999999999999764 8899999996521 00 000 1111000 02588999999999999
Q ss_pred C-ceeEEEEeecccccccccEEEEEEecC
Q 008366 524 N-PGVWFMHCHFDVHLPWGLATTFIVENG 551 (568)
Q Consensus 524 n-pG~w~~HCHil~H~d~GM~~~~~V~~~ 551 (568)
. +|.|.||||...|..+||.+.++|++.
T Consensus 88 ~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 88 QQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred ccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 9 999999999999988999999999863
No 41
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=3.2e-06 Score=91.24 Aligned_cols=247 Identities=19% Similarity=0.178 Sum_probs=141.3
Q ss_pred eeEEEECCCCC-C----CeEEEecCCEEEEEEEeCC-CCCeeEEEccccccCCCCCCCCC---C-cccccCCCCCeEEEE
Q 008366 44 QTITAVNGSLP-G----PTIRVQEGDTLIVHVSNES-PYNITIHWHGIFQIRSIWADGPN---M-ITQCPIRPGNSYTYK 113 (568)
Q Consensus 44 ~~~~~~NG~~p-G----P~i~v~~Gd~v~i~l~N~l-~~~~~iH~HG~~~~~~~~~DG~~---~-~~~~~i~PG~~~~y~ 113 (568)
-...++||+.. . +++.+++|++.++|+.|.. .....+..-|....... +||.- . ....-|.|||++++-
T Consensus 192 ~D~~~iNg~~g~~~~~~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe-~Dg~y~~p~~~~~l~i~~GQ~~~vL 270 (563)
T KOG1263|consen 192 SDGVLINGRSGFLYNCTPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVE-VDGAYTKPFTTDSLDIHPGQTYSVL 270 (563)
T ss_pred CCceEECCCCCcccCceeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEE-ecceEEeeeeeceEEEcCCcEEEEE
Confidence 47899999872 1 6899999999999999994 44444555555554443 58832 1 233568999999999
Q ss_pred EEeCCCCCceeEecChhhhh-----h-cceEEEEEecCCCC---CCC----CCC-CCCceeEEEee---cccCc------
Q 008366 114 FRIINQEGTLWWHAHISMLR-----A-TVHGAFIIRPKSGH---KYP----FPK-PDKEVPIVLGE---WWNDD------ 170 (568)
Q Consensus 114 f~~~~~~Gt~~YH~h~~~~~-----~-Gl~G~liV~~~~~~---~~~----~~~-~~~e~~l~~~d---~~~~~------ 170 (568)
.++.+.++.||.-...-... . --+|.+.-...... ..+ .+. .+....+-+.. +..+.
T Consensus 271 vtadq~~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~ 350 (563)
T KOG1263|consen 271 LTADQSPGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQARSIRSLLSASFARPV 350 (563)
T ss_pred EeCCCCCCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhhcccccccccCcccC
Confidence 99977788888876542221 1 11222222221100 000 000 00000000000 00000
Q ss_pred HHHHHhhc--------cc--cCCCCCCCceEEEcCCCC---------------------CCCCCCC----------Ccee
Q 008366 171 IMDVANRG--------EI--TGVGPRISDAFTINGMPG---------------------DLYPCSE----------NQTY 209 (568)
Q Consensus 171 ~~~~~~~~--------~~--~g~~~~~~~~~~iNG~~g---------------------~~~~~~~----------~~~~ 209 (568)
...+.... .. ............||+.+. .-+.|.. ....
T Consensus 351 P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~ 430 (563)
T KOG1263|consen 351 PQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKPPIKFDYTGPTLGTS 430 (563)
T ss_pred CCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCCccccCCccccccce
Confidence 00000000 00 000000011233343311 0011221 1224
Q ss_pred EEEEEcCcEEEEEEEeccCCCe--EEEEEcCceeEEEEecCCC-------------CCcEEEeEEEECCCceEEEEEEeC
Q 008366 210 KLKVEKGKTYLLRIINAALNNQ--LFFKIANHKFTVVAVDAGY-------------TDPYVTDVVVIAPGQTTDVLLKAD 274 (568)
Q Consensus 210 ~l~v~~G~~~rlRliN~~~~~~--~~~~i~gh~~~via~DG~~-------------~~p~~~d~~~l~pg~r~dv~~~~~ 274 (568)
.+.++-+..+-+-|-|.+...+ +.+|||||.|+|++.+-.. ..|...||+.|.||.-.-|.|.++
T Consensus 431 v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~ad 510 (563)
T KOG1263|consen 431 VMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVAD 510 (563)
T ss_pred EEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEEeCCCCEEEEEEEcC
Confidence 5788889999999999875443 4579999999999993321 245678999999999999999999
Q ss_pred CCCceeEEEEeeccCCCC
Q 008366 275 QPVGSYYMAARAYAAPPP 292 (568)
Q Consensus 275 ~~~g~y~~~~~~~~~~~~ 292 (568)
+||-|.||||...+...
T Consensus 511 -NPG~W~~HCHie~H~~~ 527 (563)
T KOG1263|consen 511 -NPGVWLMHCHIEDHLYL 527 (563)
T ss_pred -CCcEEEEEEecHHHHhc
Confidence 99999999999776543
No 42
>PRK02710 plastocyanin; Provisional
Probab=98.69 E-value=2.4e-07 Score=80.10 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=53.8
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhhc
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT 135 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~G 135 (568)
+.|++++||+| +++|....+|++.+.|... . ..+...+.||++++|.|. .+|+|-|+|-.|.. .|
T Consensus 47 ~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~~--------~-~~~~~~~~pg~t~~~tF~---~~G~y~y~C~~H~~-~g 111 (119)
T PRK02710 47 STLTIKAGDTV--KWVNNKLAPHNAVFDGAKE--------L-SHKDLAFAPGESWEETFS---EAGTYTYYCEPHRG-AG 111 (119)
T ss_pred CEEEEcCCCEE--EEEECCCCCceEEecCCcc--------c-cccccccCCCCEEEEEec---CCEEEEEEcCCCcc-CC
Confidence 78999999985 5678877888888764321 1 011124899999999886 38999999984322 39
Q ss_pred ceEEEEEe
Q 008366 136 VHGAFIIR 143 (568)
Q Consensus 136 l~G~liV~ 143 (568)
|.|.|+|+
T Consensus 112 M~G~I~V~ 119 (119)
T PRK02710 112 MVGKITVE 119 (119)
T ss_pred cEEEEEEC
Confidence 99999984
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.59 E-value=1.6e-07 Score=79.38 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=47.2
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhhc
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT 135 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~G 135 (568)
..|++++|++|+|+++|.....+.+...++... ..|.||++.++.|.. .++|+|-|+|..++.
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~~-------------~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~~--- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGIS-------------KVLPPGETATVTFTP-LKPGEYEFYCTMHPN--- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTEE-------------EEE-TT-EEEEEEEE--S-EEEEEB-SSS-T---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCceE-------------EEECCCCEEEEEEcC-CCCEEEEEEcCCCCc---
Confidence 599999999999999999888877777664322 259999999999987 999999999998763
Q ss_pred ceEEEEE
Q 008366 136 VHGAFII 142 (568)
Q Consensus 136 l~G~liV 142 (568)
|.|-|+|
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 5677765
No 44
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.27 E-value=5e-06 Score=69.41 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCc--ccccCCCCCeEEEEEEeCCCCCceeEecChhhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMI--TQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLR 133 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~--~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~ 133 (568)
..|++++||+| +++|....++++.++........ .+..... +...+.||+++++.|. .+|+|.|+|. +.+
T Consensus 17 ~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pG~t~~~tF~---~~G~y~y~C~--~H~ 88 (99)
T TIGR02656 17 AKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGV-KELAKSLSHKDLLNSPGESYEVTFS---TPGTYTFYCE--PHR 88 (99)
T ss_pred CEEEECCCCEE--EEEECCCCCceEEECCCCCccch-hhhcccccccccccCCCCEEEEEeC---CCEEEEEEcC--Ccc
Confidence 68999999986 55688777888887644221110 0000111 2235789999999885 3999999998 334
Q ss_pred h-cceEEEEEe
Q 008366 134 A-TVHGAFIIR 143 (568)
Q Consensus 134 ~-Gl~G~liV~ 143 (568)
. ||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 3 999999984
No 45
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=98.07 E-value=7.8e-05 Score=68.41 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=74.4
Q ss_pred eEEEECCCCCC-CeEEEecCCEEEEEEEeCCCCCeeEEEc--cccc--cCCCCCCCCC----C-----cccccCCCCCeE
Q 008366 45 TITAVNGSLPG-PTIRVQEGDTLIVHVSNESPYNITIHWH--GIFQ--IRSIWADGPN----M-----ITQCPIRPGNSY 110 (568)
Q Consensus 45 ~~~~~NG~~pG-P~i~v~~Gd~v~i~l~N~l~~~~~iH~H--G~~~--~~~~~~DG~~----~-----~~~~~i~PG~~~ 110 (568)
..+.|||..-| ++|-+.+|-+|.|+++|....+|++-.= +-.+ ....+.||.- + .....|.+|++.
T Consensus 74 ~~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~ 153 (196)
T PF06525_consen 74 NPFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSA 153 (196)
T ss_pred CceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCcee
Confidence 47889999888 7999999999999999997666553332 2211 1122245511 1 123468899999
Q ss_pred EEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCCC
Q 008366 111 TYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKSG 147 (568)
Q Consensus 111 ~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~~ 147 (568)
.-.|.. -++|.|||-|-..++.. ||++-|+|.+.-.
T Consensus 154 ~~~~~~-l~aG~YwlvC~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 154 SGVYND-LPAGYYWLVCGIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred eEEEcc-CCCceEEEEccCCChhhcCCEEEEEEecCcc
Confidence 877764 78999999999988777 9999999987543
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=98.07 E-value=2.3e-05 Score=63.10 Aligned_cols=73 Identities=18% Similarity=0.308 Sum_probs=52.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhhc
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT 135 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~G 135 (568)
+.|++++||+| ++.|....+|++++.........+ ....+.||+++++.| +++|+|-|||-.|. .
T Consensus 11 ~~i~v~~GdtV--t~~N~d~~~Hnv~~~~g~~~~~~~-------~~~~~~~g~~~~~tf---~~~G~y~y~C~~Hp---~ 75 (83)
T TIGR02657 11 PELHVKVGDTV--TWINREAMPHNVHFVAGVLGEAAL-------KGPMMKKEQAYSLTF---TEAGTYDYHCTPHP---F 75 (83)
T ss_pred CEEEECCCCEE--EEEECCCCCccEEecCCCCccccc-------cccccCCCCEEEEEC---CCCEEEEEEcCCCC---C
Confidence 78999999996 467887788998876432111111 111367888888766 67999999998765 4
Q ss_pred ceEEEEEe
Q 008366 136 VHGAFIIR 143 (568)
Q Consensus 136 l~G~liV~ 143 (568)
|.|.++|+
T Consensus 76 M~G~v~V~ 83 (83)
T TIGR02657 76 MRGKVVVE 83 (83)
T ss_pred CeEEEEEC
Confidence 78999884
No 47
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.05 E-value=2.5e-05 Score=71.38 Aligned_cols=94 Identities=18% Similarity=0.218 Sum_probs=77.7
Q ss_pred ceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEe
Q 008366 443 TSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRA 522 (568)
Q Consensus 443 ~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 522 (568)
.+.+.++.|+++.|.|.|.+. ...+.|++.||+|.|++.. +.. ..|...|++.|.+|+.+-|.+++
T Consensus 59 ~~~~~v~~g~~~rlRliNa~~--~~~~~~~i~gh~~~Via~D---------G~~---v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 59 PPVIKVKPGERYRLRLINAGA--STSFNFSIDGHPMTVIAAD---------GVP---VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp SGEEEEETTTEEEEEEEEESS--S-BEEEEETTBCEEEEEET---------TEE---EEEEEESBEEE-TTEEEEEEEEE
T ss_pred cceEEEcCCcEEEEEEEeccC--CeeEEEEeeccceeEeeec---------ccc---ccccccceEEeeCCeEEEEEEEe
Confidence 378899999999999999764 4689999999999999983 222 22778999999999999999999
Q ss_pred cC-ceeEEEEe----ecccccccccEEEEEEec
Q 008366 523 NN-PGVWFMHC----HFDVHLPWGLATTFIVEN 550 (568)
Q Consensus 523 dn-pG~w~~HC----Hil~H~d~GM~~~~~V~~ 550 (568)
+. +|.|.++| +...+...|+...+.+.+
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y~ 157 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAILRYD 157 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEEEET
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEEEEC
Confidence 98 99999999 556777888888777654
No 48
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.03 E-value=2.5e-05 Score=70.02 Aligned_cols=92 Identities=16% Similarity=0.216 Sum_probs=60.1
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCC---C--cEEEE
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPI---G--GWAVI 518 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~---~--g~~~i 518 (568)
+.+.++.|+.|++.+.|... ...|.|-||.+.-..-. .+..+.. +.....-.+|+ + ++..+
T Consensus 52 P~I~v~~Gd~V~v~v~N~~~--~~~H~~~I~~~g~~~~~------~p~mdG~------~~~~~~~i~p~~~~g~~~~~~~ 117 (148)
T TIGR03095 52 PTIVIPEGVTVHFTVINTDT--DSGHNFDISKRGPPYPY------MPGMDGL------GFVAGTGFLPPPKSGKFGYTDF 117 (148)
T ss_pred CEEEEcCCCEEEEEEEeCCC--CccccEEeecCCCcccc------ccccCCC------CccccCcccCCCCCCccceeEE
Confidence 77889999999999999753 35677766643211000 0000000 11111112232 2 25688
Q ss_pred EEEecCceeEEEEeecccccccccEEEEEEe
Q 008366 519 RFRANNPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 519 rf~adnpG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
.|+++.+|.+.||||+..|...||-+.+.|+
T Consensus 118 tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 118 TYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 9999999999999999999999999999874
No 49
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.96 E-value=3.1e-05 Score=64.61 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=53.7
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCC-CCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWAD-GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~D-G~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~ 134 (568)
+.|++++||+| ++.|....+|++.+---........+ .........+.||+++++.|+ .+|+|.|+|-. ....
T Consensus 17 ~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~P-H~~~ 90 (99)
T PF00127_consen 17 SEITVKAGDTV--TFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCTP-HYEA 90 (99)
T ss_dssp SEEEEETTEEE--EEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEETT-TGGT
T ss_pred CEEEECCCCEE--EEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcCC-Cccc
Confidence 69999999985 56776677788776331110000000 001112235789999999886 79999999984 3334
Q ss_pred cceEEEEEe
Q 008366 135 TVHGAFIIR 143 (568)
Q Consensus 135 Gl~G~liV~ 143 (568)
||.|.|+|+
T Consensus 91 GM~G~i~V~ 99 (99)
T PF00127_consen 91 GMVGTIIVE 99 (99)
T ss_dssp TSEEEEEEE
T ss_pred CCEEEEEEC
Confidence 999999995
No 50
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.92 E-value=0.00024 Score=63.74 Aligned_cols=98 Identities=17% Similarity=0.135 Sum_probs=72.1
Q ss_pred EEEECCCCCC-CeEEEecCCEEEEEEEeCCCCCeeEEEcccccc------CCCCCCCCC----Ccc-----cccCCCCCe
Q 008366 46 ITAVNGSLPG-PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQI------RSIWADGPN----MIT-----QCPIRPGNS 109 (568)
Q Consensus 46 ~~~~NG~~pG-P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~------~~~~~DG~~----~~~-----~~~i~PG~~ 109 (568)
.+-|||+..| ++|-+..|-+|.|+|+|....+|++-. +... +....||.. |.+ -..|.+|++
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i--v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs 151 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL--LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHS 151 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE--ecCCCCCCCccccccCceeEeecccccCccccccccccce
Confidence 4789999999 899999999999999999877777655 2211 111135522 211 134668888
Q ss_pred EEEEEEeCCCCCceeEecChhhhhh-cceEEEEEecCC
Q 008366 110 YTYKFRIINQEGTLWWHAHISMLRA-TVHGAFIIRPKS 146 (568)
Q Consensus 110 ~~y~f~~~~~~Gt~~YH~h~~~~~~-Gl~G~liV~~~~ 146 (568)
..-.|.. -++|+|||-|-.-++-. ||+|.+||.+.-
T Consensus 152 ~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 152 RSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 7767765 89999999999877655 999999997654
No 51
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.91 E-value=4.5e-05 Score=82.17 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=68.7
Q ss_pred eccCcee--eeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEE
Q 008366 37 IGRLCRQ--QTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKF 114 (568)
Q Consensus 37 ~~~~G~~--~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f 114 (568)
+.++|.. .++.+..-.+--+.|+|++||+|+++|+|.....=.+ ||+..... |+ ..-+.||++.+..|
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~~----nI----~~dv~PG~t~svtF 603 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPNY----GV----NMEVAPQATASVTF 603 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeeccc----Cc----cEEEcCCceEEEEE
Confidence 5566644 4555666666436899999999999999963311111 55544321 11 12478999999999
Q ss_pred EeCCCCCceeEecChh-hhhh-cceEEEEEecC
Q 008366 115 RIINQEGTLWWHAHIS-MLRA-TVHGAFIIRPK 145 (568)
Q Consensus 115 ~~~~~~Gt~~YH~h~~-~~~~-Gl~G~liV~~~ 145 (568)
++ +++|.|||||..- +..+ +|.|.++|.|+
T Consensus 604 ~a-dkPGvy~~~CtefCGa~H~~M~G~~iVep~ 635 (635)
T PRK02888 604 TA-DKPGVYWYYCTWFCHALHMEMRGRMLVEPK 635 (635)
T ss_pred Ec-CCCEEEEEECCcccccCcccceEEEEEEeC
Confidence 98 9999999999763 2222 89999999874
No 52
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.66 E-value=0.00023 Score=59.40 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=57.5
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|++|+|+ |.+. ..|.+.++.-.+..-. . ........+++.+.||....+.|..
T Consensus 17 ~~i~v~~G~~V~~~--N~~~---~~H~~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~pG~t~~~tF~~- 76 (99)
T TIGR02656 17 AKISIAAGDTVEWV--NNKG---GPHNVVFDEDAVPAGV-----K---------ELAKSLSHKDLLNSPGESYEVTFST- 76 (99)
T ss_pred CEEEECCCCEEEEE--ECCC---CCceEEECCCCCccch-----h---------hhcccccccccccCCCCEEEEEeCC-
Confidence 56789999999887 5433 6777776543211100 0 0011123467788999998886665
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
||.|.|||- .|..+||.+.|.|+
T Consensus 77 -~G~y~y~C~--~H~~aGM~G~I~V~ 99 (99)
T TIGR02656 77 -PGTYTFYCE--PHRGAGMVGKITVE 99 (99)
T ss_pred -CEEEEEEcC--CccccCCEEEEEEC
Confidence 999999998 89999999999884
No 53
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.43 E-value=0.00079 Score=57.51 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=48.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEE-ccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHW-HGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~-HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~ 134 (568)
..|+|++||+|+....|. ++++.+ .+. .. +|... ..-.+|+++++.| +.+|+|-|+|-.|.. .
T Consensus 15 ~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~----~p--~g~~~---~~s~~g~~~~~tF---~~~G~Y~Y~C~pH~~-~ 78 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDK---GHNVETIKGM----IP--EGAEA---FKSKINEEYTVTV---TEEGVYGVKCTPHYG-M 78 (116)
T ss_pred CEEEECCCCEEEEEECCC---CeeEEEccCC----Cc--CCccc---ccCCCCCEEEEEe---CCCEEEEEEcCCCcc-C
Confidence 689999999976665554 566554 121 11 33221 1223566666555 679999999984422 2
Q ss_pred cceEEEEEecCC
Q 008366 135 TVHGAFIIRPKS 146 (568)
Q Consensus 135 Gl~G~liV~~~~ 146 (568)
||.|.|+|.++.
T Consensus 79 GM~G~V~Vg~~~ 90 (116)
T TIGR02375 79 GMVALIQVGDPP 90 (116)
T ss_pred CCEEEEEECCCC
Confidence 999999998753
No 54
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.30 E-value=0.0011 Score=57.59 Aligned_cols=61 Identities=18% Similarity=0.410 Sum_probs=49.3
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|+.|+|.+.|.+. ..|.+-++++.+ ...|+++...+++|.++
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~---~~H~f~i~~~gi----------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSP---ISEGFSIDAYGI----------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred CEEEECCCCEEEEEEEeCCC---CccceEECCCCc----------------------------ceEECCCCeEEEEEECC
Confidence 45679999999999999764 677777765421 22688999999999999
Q ss_pred CceeEEEEeecc
Q 008366 524 NPGVWFMHCHFD 535 (568)
Q Consensus 524 npG~w~~HCHil 535 (568)
.||.|.|||-.-
T Consensus 110 KpG~Y~y~C~~H 121 (135)
T TIGR03096 110 KAGAFTIWCQLH 121 (135)
T ss_pred CCEEEEEeCCCC
Confidence 999999999653
No 55
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.29 E-value=0.0012 Score=56.86 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhhc
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRAT 135 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~G 135 (568)
-.|++++||+ |+++|.....|+++.-+.. .. +|.- .....+|+++++.| +.+|+|-|+|-.|... |
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~---~~--~g~~---~~~~~~~~s~~~Tf---e~~G~Y~Y~C~PH~~~-g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGM---DP--EGSG---TLKAGINESFTHTF---ETPGEYTYYCTPHPGM-G 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCC---Cc--cccc---ccccCCCcceEEEe---cccceEEEEeccCCCC-C
Confidence 3899999999 6788998889998876554 11 2221 12345567777777 4599999999776322 9
Q ss_pred ceEEEEEec
Q 008366 136 VHGAFIIRP 144 (568)
Q Consensus 136 l~G~liV~~ 144 (568)
|-|.|+|.+
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999964
No 56
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.12 E-value=0.0039 Score=53.11 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=49.7
Q ss_pred CeEEEecCCEEEEEEEeC-CCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh
Q 008366 56 PTIRVQEGDTLIVHVSNE-SPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~-l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~ 134 (568)
..|+|++||+|+ ++|+ ...+|++..-+ ...| | .......+|+++++.| .++|+|-|+|-.|.. .
T Consensus 42 ~~ltV~~GdTVt--w~~~~d~~~HnV~s~~----~~~f-~----s~~~~~~~G~t~s~Tf---~~~G~Y~Y~C~pH~~-~ 106 (115)
T TIGR03102 42 PAIRVDPGTTVV--WEWTGEGGGHNVVSDG----DGDL-D----ESERVSEEGTTYEHTF---EEPGIYLYVCVPHEA-L 106 (115)
T ss_pred CEEEECCCCEEE--EEECCCCCCEEEEECC----CCCc-c----ccccccCCCCEEEEEe---cCCcEEEEEccCCCC-C
Confidence 689999999965 6654 35677776421 0111 1 0112357899999988 469999999986622 2
Q ss_pred cceEEEEEe
Q 008366 135 TVHGAFIIR 143 (568)
Q Consensus 135 Gl~G~liV~ 143 (568)
||.|.|+|+
T Consensus 107 gM~G~I~V~ 115 (115)
T TIGR03102 107 GMKGAVVVE 115 (115)
T ss_pred CCEEEEEEC
Confidence 899999984
No 57
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.90 E-value=0.0068 Score=50.47 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=54.4
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|++|.|+..+. ..|.+++ .. + ........... +..-.+..+.+|....+.|.
T Consensus 17 ~~i~V~~G~tV~~~n~~~-----~~Hnv~~-------~~-~--~~~~~~~~~~~----~~~~~~~~~~~G~~~~~tF~-- 75 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDS-----MPHNVVF-------VA-D--GMPAGADSDYV----PPGDSSPLLAPGETYSVTFT-- 75 (99)
T ss_dssp SEEEEETTEEEEEEEESS-----SSBEEEE-------ET-T--SSHTTGGHCHH----STTCEEEEBSTTEEEEEEEE--
T ss_pred CEEEECCCCEEEEEECCC-----CCceEEE-------ec-c--ccccccccccc----CccccceecCCCCEEEEEeC--
Confidence 567899999999877632 5555443 22 1 11100000000 01115667888888777776
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
.+|.|.|+|- - |...||-+.|+|+
T Consensus 76 ~~G~y~y~C~-P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 76 KPGTYEYYCT-P-HYEAGMVGTIIVE 99 (99)
T ss_dssp SSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred CCeEEEEEcC-C-CcccCCEEEEEEC
Confidence 9999999999 4 9999999999985
No 58
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.55 E-value=0.012 Score=49.39 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=41.8
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|+.+.+++.|.+. ..|-|.+-+. .-...+++|+..++.|.++
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~---~~h~~~i~~~----------------------------~~~~~l~~g~~~~~~f~~~ 83 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDS---RPHEFVIPDL----------------------------GISKVLPPGETATVTFTPL 83 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SS---S-EEEEEGGG----------------------------TEEEEE-TT-EEEEEEEE-
T ss_pred CEEEEcCCCeEEEEEEECCC---CcEEEEECCC----------------------------ceEEEECCCCEEEEEEcCC
Confidence 46789999999999999865 4455544441 1125789999999999999
Q ss_pred CceeEEEEeecccc
Q 008366 524 NPGVWFMHCHFDVH 537 (568)
Q Consensus 524 npG~w~~HCHil~H 537 (568)
.||.|-|+|-+-.+
T Consensus 84 ~~G~y~~~C~~~~~ 97 (104)
T PF13473_consen 84 KPGEYEFYCTMHPN 97 (104)
T ss_dssp S-EEEEEB-SSS-T
T ss_pred CCEEEEEEcCCCCc
Confidence 99999999995543
No 59
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.55 E-value=0.017 Score=53.29 Aligned_cols=105 Identities=15% Similarity=0.215 Sum_probs=71.6
Q ss_pred ceEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEc--Cc---eeEEEEecCCCC-C----cEEEeE
Q 008366 189 DAFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIA--NH---KFTVVAVDAGYT-D----PYVTDV 258 (568)
Q Consensus 189 ~~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~--gh---~~~via~DG~~~-~----p~~~d~ 258 (568)
+.+-+||... .+.++-+.+|-+|.++|+|.+...| +|-+- +- ....++.||..+ . +.....
T Consensus 74 ~~~nfnGts~--------G~m~i~VPAGw~V~i~f~N~~~l~H-nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~ 144 (196)
T PF06525_consen 74 NPFNFNGTSN--------GQMTIYVPAGWNVQITFTNQESLPH-NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTS 144 (196)
T ss_pred CceeeecccC--------CcEEEEEcCCCEEEEEEEcCCCCCe-eEEEEeCCCCCCCccccCCCCceeeeccCCCCcccc
Confidence 3677888843 5689999999999999999986554 34442 11 123566777654 1 111122
Q ss_pred EEECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCC
Q 008366 259 VVIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGA 311 (568)
Q Consensus 259 ~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~ 311 (568)
--|.+||+....+... .+|.||+.|....+.+. +..+.|.++.+
T Consensus 145 ~GI~~G~s~~~~~~~l-~aG~YwlvC~ipGHA~s--------GMw~~LiVs~~ 188 (196)
T PF06525_consen 145 NGISSGQSASGVYNDL-PAGYYWLVCGIPGHAES--------GMWGVLIVSSN 188 (196)
T ss_pred CCccCCceeeEEEccC-CCceEEEEccCCChhhc--------CCEEEEEEecC
Confidence 3566899999887655 68999999998877764 35666666553
No 60
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.42 E-value=0.015 Score=63.15 Aligned_cols=79 Identities=20% Similarity=0.344 Sum_probs=60.1
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|+.|.+.+-|.....+..|.|-+-++... +.+.||....+.|+++
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI~----------------------------~dv~PG~t~svtF~ad 606 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGVN----------------------------MEVAPQATASVTFTAD 606 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCcc----------------------------EEEcCCceEEEEEEcC
Confidence 457799999999999996433457888777444311 2566889999999999
Q ss_pred CceeEEEEeecccccc-cccEEEEEEec
Q 008366 524 NPGVWFMHCHFDVHLP-WGLATTFIVEN 550 (568)
Q Consensus 524 npG~w~~HCHil~H~d-~GM~~~~~V~~ 550 (568)
.||+|.+||...-|.. .+|...+.|++
T Consensus 607 kPGvy~~~CtefCGa~H~~M~G~~iVep 634 (635)
T PRK02888 607 KPGVYWYYCTWFCHALHMEMRGRMLVEP 634 (635)
T ss_pred CCEEEEEECCcccccCcccceEEEEEEe
Confidence 9999999999844332 48999888864
No 61
>PRK02710 plastocyanin; Provisional
Probab=96.37 E-value=0.017 Score=49.85 Aligned_cols=73 Identities=25% Similarity=0.293 Sum_probs=50.8
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|++|+|+ |.+. ..|.+...+... + ......+.++....+.|..
T Consensus 47 ~~i~v~~Gd~V~~~--N~~~---~~H~v~~~~~~~---------~---------------~~~~~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 47 STLTIKAGDTVKWV--NNKL---APHNAVFDGAKE---------L---------------SHKDLAFAPGESWEETFSE- 96 (119)
T ss_pred CEEEEcCCCEEEEE--ECCC---CCceEEecCCcc---------c---------------cccccccCCCCEEEEEecC-
Confidence 55689999999886 4433 678775432110 0 0111346788777766665
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
||.|.|+|= .|...||-+.|+|+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEEC
Confidence 999999997 89999999999984
No 62
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=95.86 E-value=0.059 Score=55.52 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=51.5
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCC-CcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPN-MITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~-~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~ 134 (568)
..+.++.|+ +++.++|....++.+-.- +|+- .-....|.||.+..+.+++ .+|+|-|+|-.+ .
T Consensus 44 ~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C~~~---~ 107 (375)
T PRK10378 44 MTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTCGLL---T 107 (375)
T ss_pred CceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeecCcC---C
Confidence 589999996 999999998777553221 1110 0001369999999887765 699999999443 3
Q ss_pred cceEEEEEecC
Q 008366 135 TVHGAFIIRPK 145 (568)
Q Consensus 135 Gl~G~liV~~~ 145 (568)
.+.|.|+|...
T Consensus 108 ~~~g~l~Vtg~ 118 (375)
T PRK10378 108 NPKGKLIVKGE 118 (375)
T ss_pred CCCceEEEeCC
Confidence 34689999754
No 63
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=95.67 E-value=0.07 Score=45.62 Aligned_cols=33 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred EEEEEecCceeEEEEeecccccccccEEEEEEecC
Q 008366 517 VIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 551 (568)
Q Consensus 517 ~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 551 (568)
.+.++++.+|.+-|+|= .|..+||-+.|+|.++
T Consensus 57 ~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 57 EYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 35566689999999998 9999999999999874
No 64
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.059 Score=47.65 Aligned_cols=95 Identities=17% Similarity=0.142 Sum_probs=64.3
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
....++-|+++..++.|.+. .-|=|=+- ++....+ .+... ....-..---..++.|.||....+-+.+.
T Consensus 63 ~~~~v~aG~tv~~v~~n~~e---l~hef~~~---~~~~~~~--~~~~~---~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 63 SSFEVKAGETVRFVLKNEGE---LKHEFTMD---APDKNLE--HVTHM---ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred CcccccCCcEEeeeecCccc---ceEEEecc---Cccccch--hHHHh---hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 34567889999999999764 44433332 1111110 00000 00000111235689999999999999999
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
++|.+-|-|-|-+|-+.||-+-|+|.
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999999985
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.50 E-value=0.15 Score=45.06 Aligned_cols=88 Identities=18% Similarity=0.226 Sum_probs=62.9
Q ss_pred CCCCCeEEEecCCEEEEEEEeCCC--CCeeE---------EEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCC
Q 008366 52 SLPGPTIRVQEGDTLIVHVSNESP--YNITI---------HWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQE 120 (568)
Q Consensus 52 ~~pGP~i~v~~Gd~v~i~l~N~l~--~~~~i---------H~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~ 120 (568)
.+++-.+.++.|++++..+.|... ...++ -.|...... +++- ......+.||++-+..|.. ..+
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~D---me~d-~~~~v~L~PG~s~elvv~f-t~~ 133 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADD---MEHD-DPNTVTLAPGKSGELVVVF-TGA 133 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCc---cccC-CcceeEeCCCCcEEEEEEe-cCC
Confidence 346668999999999999999842 11111 112222221 1121 1123469999999999998 999
Q ss_pred CceeEecChhhhhh-cceEEEEEec
Q 008366 121 GTLWWHAHISMLRA-TVHGAFIIRP 144 (568)
Q Consensus 121 Gt~~YH~h~~~~~~-Gl~G~liV~~ 144 (568)
|.|-+-|-..+++. ||.|-|.|.+
T Consensus 134 g~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 134 GKYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred ccEEEEecCCCcccCCcEEEEEeCC
Confidence 99999999999998 9999999864
No 66
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=95.05 E-value=0.12 Score=44.22 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=54.0
Q ss_pred CeEEEec-CCEEEEEEEeCCCCC-----eeEEE--ccccccCCC-------CCCCCCC-c-----ccccCCCCCeEEEEE
Q 008366 56 PTIRVQE-GDTLIVHVSNESPYN-----ITIHW--HGIFQIRSI-------WADGPNM-I-----TQCPIRPGNSYTYKF 114 (568)
Q Consensus 56 P~i~v~~-Gd~v~i~l~N~l~~~-----~~iH~--HG~~~~~~~-------~~DG~~~-~-----~~~~i~PG~~~~y~f 114 (568)
..|.|.. |.+|.|+|.|....+ |++=. -|-.+.... -.|=+|. . ....|.|||+.+..|
T Consensus 16 ~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF 95 (125)
T TIGR02695 16 KSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTF 95 (125)
T ss_pred cEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEE
Confidence 6899998 489999999985433 33211 010000000 0011221 0 123589999999999
Q ss_pred EeCC-CCCc-eeEecChhhhhhcceEEEE
Q 008366 115 RIIN-QEGT-LWWHAHISMLRATVHGAFI 141 (568)
Q Consensus 115 ~~~~-~~Gt-~~YH~h~~~~~~Gl~G~li 141 (568)
+++. ++|+ |-|.|-.-++...|.|.+.
T Consensus 96 ~~~~l~~g~~Y~f~CSFPGH~~~MkG~l~ 124 (125)
T TIGR02695 96 DVSKLSAGEDYTFFCSFPGHWAMMRGTVK 124 (125)
T ss_pred ECCCCCCCCcceEEEcCCCcHHhceEEEe
Confidence 9853 6786 9999998877778888775
No 67
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.89 E-value=0.37 Score=41.53 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=50.4
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChh-hhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS-MLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~-~~~~ 134 (568)
+.|.++.|++|++.+++. +--|++...++... .-+-||+.....|++ +++|+|++.|..- +..+
T Consensus 46 ~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~k-------------~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSE-DVIHSFWIPELGIK-------------MDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SEEEEETTSEEEEEEEES-SS-EEEEETTCTEE-------------EEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred ceecccccceEeEEEEcC-CccccccccccCcc-------------cccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 789999999999999996 44444444333211 246789999999998 9999999999752 2222
Q ss_pred -cceEEEEE
Q 008366 135 -TVHGAFII 142 (568)
Q Consensus 135 -Gl~G~liV 142 (568)
-|.|-++|
T Consensus 111 ~~M~~~v~V 119 (120)
T PF00116_consen 111 SFMPGKVIV 119 (120)
T ss_dssp GG-EEEEEE
T ss_pred CCCeEEEEE
Confidence 56676665
No 68
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=93.52 E-value=1.5 Score=37.72 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=47.0
Q ss_pred eeEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008366 208 TYKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (568)
Q Consensus 208 ~~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~ 287 (568)
...+.++.|+.++|++.+.. -.|.|.+.+..+++ .+-||+.-.+.++++ .||.|.++|.-+
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k~----------------d~~PG~~~~~~~~~~-~~G~y~~~C~e~ 105 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIKM----------------DAIPGRTNSVTFTPD-KPGTYYGQCAEY 105 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEEE----------------EEBTTCEEEEEEEES-SSEEEEEEE-SS
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCccc----------------ccccccceeeeeeec-cCCcEEEcCccc
Confidence 35899999999999998754 34556776554443 445899999999998 799999999864
Q ss_pred c
Q 008366 288 A 288 (568)
Q Consensus 288 ~ 288 (568)
=
T Consensus 106 C 106 (120)
T PF00116_consen 106 C 106 (120)
T ss_dssp S
T ss_pred c
Confidence 3
No 69
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.30 E-value=0.62 Score=42.35 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=69.2
Q ss_pred eEEEcCCCCCCCCCCCCceeEEEEEcCcEEEEEEEeccCCCeEEEEEc-Cce----eEEEEecCCCC-CcEEE----eEE
Q 008366 190 AFTINGMPGDLYPCSENQTYKLKVEKGKTYLLRIINAALNNQLFFKIA-NHK----FTVVAVDAGYT-DPYVT----DVV 259 (568)
Q Consensus 190 ~~~iNG~~g~~~~~~~~~~~~l~v~~G~~~rlRliN~~~~~~~~~~i~-gh~----~~via~DG~~~-~p~~~----d~~ 259 (568)
.|-+||.+. ..++|-+.+|-++.+.|+|..... |++-|- .-. --.++.||..+ .+-.. ..-
T Consensus 74 ~fNfnGts~--------G~mtIyiPaGw~V~V~f~N~e~~p-Hnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~N 144 (195)
T TIGR03094 74 PFNFNGTSY--------GAMTIYLPAGWNVYVTFTNYESLP-HNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGN 144 (195)
T ss_pred cccccCccC--------CceEEEEeCCCEEEEEEEcCCCCC-ccEEEecCCCCCCCccccccCceeEeecccccCccccc
Confidence 466788743 458999999999999999998444 444442 111 11245566544 11111 122
Q ss_pred EECCCceEEEEEEeCCCCceeEEEEeeccCCCCccccCCCcceEEEEEEcCC
Q 008366 260 VIAPGQTTDVLLKADQPVGSYYMAARAYAAPPPTIVAFDNTTTRGIVVYDGA 311 (568)
Q Consensus 260 ~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~~~~ail~y~~~ 311 (568)
-+..|++....++.- .+|.||+.|....+.+. +..+.|.++..
T Consensus 145 Gi~~Gqs~sg~~~~~-~~G~YwlvCgipGHAes--------GMw~~lIVSs~ 187 (195)
T TIGR03094 145 GISSGHSRSGWWNDT-SAGKYWLVCGITGHAES--------GMWAVVIVSSN 187 (195)
T ss_pred cccccceeEEEeccC-CCeeEEEEcccCChhhc--------CcEEEEEEecC
Confidence 456789988888776 79999999999888775 46677777654
No 70
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=93.18 E-value=0.65 Score=37.10 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=45.6
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|++|.|+ |.+. ..|..+.+...+ +..+ +. ...+.++.... ++++
T Consensus 11 ~~i~v~~GdtVt~~--N~d~---~~Hnv~~~~g~~-------~~~~--------------~~-~~~~~~g~~~~--~tf~ 61 (83)
T TIGR02657 11 PELHVKVGDTVTWI--NREA---MPHNVHFVAGVL-------GEAA--------------LK-GPMMKKEQAYS--LTFT 61 (83)
T ss_pred CEEEECCCCEEEEE--ECCC---CCccEEecCCCC-------cccc--------------cc-ccccCCCCEEE--EECC
Confidence 56789999999984 5432 678887643211 0000 01 11234554444 5668
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
.||.|.|||=+ |- +|-+.++|+
T Consensus 62 ~~G~y~y~C~~--Hp--~M~G~v~V~ 83 (83)
T TIGR02657 62 EAGTYDYHCTP--HP--FMRGKVVVE 83 (83)
T ss_pred CCEEEEEEcCC--CC--CCeEEEEEC
Confidence 89999999976 55 488888874
No 71
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.01 E-value=0.77 Score=39.19 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=48.0
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|++|.|+.++.. ..|-. .+.+.+.|+.. .....++....+.| +
T Consensus 42 ~~ltV~~GdTVtw~~~~d~----~~HnV---------~s~~~~~f~s~---------------~~~~~~G~t~s~Tf--~ 91 (115)
T TIGR03102 42 PAIRVDPGTTVVWEWTGEG----GGHNV---------VSDGDGDLDES---------------ERVSEEGTTYEHTF--E 91 (115)
T ss_pred CEEEECCCCEEEEEECCCC----CCEEE---------EECCCCCcccc---------------ccccCCCCEEEEEe--c
Confidence 4568999999999765321 34443 33322233310 11234555555444 7
Q ss_pred CceeEEEEeecccccccccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~ 549 (568)
.||.+-|+|= .|..+||-+.|+|+
T Consensus 92 ~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 92 EPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred CCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 8999999997 89999999999984
No 72
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=87.45 E-value=3.5 Score=35.82 Aligned_cols=75 Identities=21% Similarity=0.270 Sum_probs=46.0
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
-.++++.|++|+|+.... ..|..+ ..+... |...+++....+... ...++
T Consensus 54 A~v~v~pGDTVtw~~~d~-----~~Hnv~---------~~~~~~--------------~~g~~~~~~~~~~s~--~~Tfe 103 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDS-----VGHNVT---------AVGGMD--------------PEGSGTLKAGINESF--THTFE 103 (128)
T ss_pred cEEEECCCCEEEEEECCC-----CCceEE---------EeCCCC--------------cccccccccCCCcce--EEEec
Confidence 345789999999976532 345433 332210 111122222222333 44455
Q ss_pred CceeEEEEeecccccccccEEEEEEec
Q 008366 524 NPGVWFMHCHFDVHLPWGLATTFIVEN 550 (568)
Q Consensus 524 npG~w~~HCHil~H~d~GM~~~~~V~~ 550 (568)
.||.+.|.| ..|..+||-+.|.|++
T Consensus 104 ~~G~Y~Y~C--~PH~~~gM~G~IvV~~ 128 (128)
T COG3794 104 TPGEYTYYC--TPHPGMGMKGKIVVGE 128 (128)
T ss_pred ccceEEEEe--ccCCCCCcEEEEEeCC
Confidence 599999999 5799999999999863
No 73
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.20 E-value=1.5 Score=34.90 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=32.5
Q ss_pred EEEEEEEeCCCCCeeEEEccc-ccc----------CCCCCCCCCC---cccccCCCCCeEEEEEEeCC-C--CCceeE
Q 008366 65 TLIVHVSNESPYNITIHWHGI-FQI----------RSIWADGPNM---ITQCPIRPGNSYTYKFRIIN-Q--EGTLWW 125 (568)
Q Consensus 65 ~v~i~l~N~l~~~~~iH~HG~-~~~----------~~~~~DG~~~---~~~~~i~PG~~~~y~f~~~~-~--~Gt~~Y 125 (568)
.+.++++|...++.++.|.-. ... .-.|++|-.. ..+..|.||++.+|++..+. . +|+|..
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~ 80 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTL 80 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEE
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEE
Confidence 356667777666666665522 211 1234555332 23456999999999999873 3 688854
No 74
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=86.85 E-value=3.1 Score=39.36 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=55.1
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChh-hhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS-MLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~-~~~~ 134 (568)
..|.+..|+.|++++++.. . + ||...+.. |+ +.-+-||..-+..|++ +++|+|...|..- |...
T Consensus 117 ~~l~vp~g~~v~~~~ts~D---V-~--Hsf~ip~~----~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~~h 181 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD---V-I--HSFWVPEL----GG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGAGH 181 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc---h-h--hccccccc----Cc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCcCc
Confidence 5899999999999999862 1 1 55544321 11 1346689999999997 9999999999752 2222
Q ss_pred -cceEEEEEecCC
Q 008366 135 -TVHGAFIIRPKS 146 (568)
Q Consensus 135 -Gl~G~liV~~~~ 146 (568)
.|.+.++|.+++
T Consensus 182 ~~M~~~v~v~~~~ 194 (201)
T TIGR02866 182 SLMLFKVVVVERE 194 (201)
T ss_pred cCCeEEEEEECHH
Confidence 788988887653
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=86.31 E-value=1.6 Score=37.50 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=54.8
Q ss_pred eeEEEEEc-CcEEEEEEEeccCCC----eEEEEEc-CceeEEEE-------ecCCCCCc----EEEeEEEECCCceEEEE
Q 008366 208 TYKLKVEK-GKTYLLRIINAALNN----QLFFKIA-NHKFTVVA-------VDAGYTDP----YVTDVVVIAPGQTTDVL 270 (568)
Q Consensus 208 ~~~l~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via-------~DG~~~~p----~~~d~~~l~pg~r~dv~ 270 (568)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.++-++ .|-+++++ +...+=.|.+||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 35889998 589999999998543 2333331 11222222 23455532 34567799999999999
Q ss_pred EEeCC-CCc-eeEEEEeeccCC
Q 008366 271 LKADQ-PVG-SYYMAARAYAAP 290 (568)
Q Consensus 271 ~~~~~-~~g-~y~~~~~~~~~~ 290 (568)
|+++. .+| +|.+.|....+.
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~ 116 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHW 116 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcH
Confidence 99873 356 699999875543
No 76
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=85.61 E-value=4.2 Score=38.51 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=54.5
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
+.+.++.|+.|++.+.+.+ ..|.|.+-+... .. ..-||....+.|+++
T Consensus 117 ~~l~vp~g~~v~~~~ts~D----V~Hsf~ip~~~~-------------------------k~---da~PG~~~~~~~~~~ 164 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKD----VIHSFWVPELGG-------------------------KI---DAIPGQYNALWFNAD 164 (201)
T ss_pred CEEEEEcCCEEEEEEEeCc----hhhcccccccCc-------------------------eE---EecCCcEEEEEEEeC
Confidence 6778999999999998743 556554432211 12 345788899999999
Q ss_pred CceeEEEEeec---ccccccccEEEEEEecC
Q 008366 524 NPGVWFMHCHF---DVHLPWGLATTFIVENG 551 (568)
Q Consensus 524 npG~w~~HCHi---l~H~d~GM~~~~~V~~~ 551 (568)
.||.+...|.. ..| ..|...++|.++
T Consensus 165 ~~G~y~~~c~e~cG~~h--~~M~~~v~v~~~ 193 (201)
T TIGR02866 165 EPGVYYGYCAELCGAGH--SLMLFKVVVVER 193 (201)
T ss_pred CCEEEEEEehhhCCcCc--cCCeEEEEEECH
Confidence 99999999998 445 678888887653
No 77
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=83.49 E-value=13 Score=29.56 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=36.0
Q ss_pred EEEEEEEeccCCCeEEEEEc-Cce--eEEEEecCCCCC--------cEEEeEEEECCCceEEEEEEeCCC---CceeEEE
Q 008366 218 TYLLRIINAALNNQLFFKIA-NHK--FTVVAVDAGYTD--------PYVTDVVVIAPGQTTDVLLKADQP---VGSYYMA 283 (568)
Q Consensus 218 ~~rlRliN~~~~~~~~~~i~-gh~--~~via~DG~~~~--------p~~~d~~~l~pg~r~dv~~~~~~~---~g~y~~~ 283 (568)
.+.|++.|.+.. ...|.+. |++ |.|...+|..+- -+......|.|||...+..+.+.. ||.|.+.
T Consensus 3 ~~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 3 EFTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SEEEEEE
T ss_pred EEEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEEEe
Confidence 356778888744 3446654 554 444455666551 134568899999999999888853 7999875
Q ss_pred E
Q 008366 284 A 284 (568)
Q Consensus 284 ~ 284 (568)
+
T Consensus 82 a 82 (82)
T PF12690_consen 82 A 82 (82)
T ss_dssp E
T ss_pred C
Confidence 3
No 78
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=81.05 E-value=8.5 Score=37.60 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=56.6
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChh-hhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS-MLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~-~~~~ 134 (568)
+.|.+..|.+|+++++=. +.-+++...++... .-+-||...+..+++ +++|+|.-+|+.- |...
T Consensus 137 n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~k-------------~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 137 NELVLPVGRPVRFKLTSA-DVIHSFWIPQLGGK-------------IDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred ceEEEeCCCeEEEEEEec-hhceeEEecCCCce-------------eeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 899999999999998866 33334433333211 236689999999997 9999999999853 3333
Q ss_pred -cceEEEEEecCCC
Q 008366 135 -TVHGAFIIRPKSG 147 (568)
Q Consensus 135 -Gl~G~liV~~~~~ 147 (568)
.|.|.++|.++++
T Consensus 202 ~~M~~~v~vvs~~~ 215 (247)
T COG1622 202 SFMRFKVIVVSQED 215 (247)
T ss_pred ccceEEEEEEcHHH
Confidence 8899999988763
No 79
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=72.51 E-value=7.1 Score=40.77 Aligned_cols=77 Identities=18% Similarity=0.352 Sum_probs=49.0
Q ss_pred CeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecChh-hhhh
Q 008366 56 PTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHIS-MLRA 134 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~-~~~~ 134 (568)
-++.|+.||.|.+.++|-..-.-.+ ||.-... -|+. ..+.|-++..|.|.+ +.+|-+||.|--. ....
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~t--hgfv~p~----~~v~----~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh 626 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLT--HGFVIPN----YGVN----MEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALH 626 (637)
T ss_pred EEEEEecCcEEEEEecccceecccc--ceeeecc----CceE----EEEccCCceEEEEEc-cCCeeeehhhhhHHHHHH
Confidence 3678888999888888875433333 3432221 1221 358899999999998 9999999987321 1111
Q ss_pred -cceEEEEEe
Q 008366 135 -TVHGAFIIR 143 (568)
Q Consensus 135 -Gl~G~liV~ 143 (568)
-|.|-.+|+
T Consensus 627 ~em~~rmlve 636 (637)
T COG4263 627 MEMAGRMLVE 636 (637)
T ss_pred Hhhccceeec
Confidence 344555554
No 80
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=70.80 E-value=30 Score=35.38 Aligned_cols=67 Identities=22% Similarity=0.324 Sum_probs=37.0
Q ss_pred eeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCCe--------eEEEccc-ccc--CCC-----CCCCCCCcccccCCCC
Q 008366 44 QTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYNI--------TIHWHGI-FQI--RSI-----WADGPNMITQCPIRPG 107 (568)
Q Consensus 44 ~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~~--------~iH~HG~-~~~--~~~-----~~DG~~~~~~~~i~PG 107 (568)
..+.-=|-.+||-.++ +.+.++|+.+++. +++|-.- .+. ... +++|..-..+.||.||
T Consensus 270 ~kv~~a~Y~VPGR~l~------~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PG 343 (399)
T TIGR03079 270 INVTKANYDVPGRALR------VTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPG 343 (399)
T ss_pred EEEeccEEecCCcEEE------EEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCC
Confidence 3333334467887776 4577888876542 3343222 111 000 1123222234589999
Q ss_pred CeEEEEEEe
Q 008366 108 NSYTYKFRI 116 (568)
Q Consensus 108 ~~~~y~f~~ 116 (568)
|+.+.+..+
T Consensus 344 ETr~v~v~a 352 (399)
T TIGR03079 344 ETVEVKMEA 352 (399)
T ss_pred cceEEEEEE
Confidence 999999987
No 81
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=66.75 E-value=46 Score=31.28 Aligned_cols=61 Identities=15% Similarity=0.260 Sum_probs=42.9
Q ss_pred EEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccC
Q 008366 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAA 289 (568)
Q Consensus 210 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~ 289 (568)
.+.+..|+++||++.... -.|+|.+.+-.. .+..-||..-.+.++++ .+|.|...|..+-.
T Consensus 117 ~l~lp~g~~v~~~ltS~D--ViHsf~vp~l~~----------------k~d~~PG~~~~~~~~~~-~~G~y~g~C~e~CG 177 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSSD--VIHSFSVPDLNL----------------KMDAIPGRINHLFFCPD-RHGVFVGYCSELCG 177 (194)
T ss_pred eEEEeCCCEEEeeeecCc--cccceeccccCc----------------eeecCCCceEEEEEEcC-CCEEEEEEeehhhC
Confidence 588999999999995443 233344433222 23344899999999988 78999999986543
No 82
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=64.65 E-value=36 Score=33.30 Aligned_cols=76 Identities=17% Similarity=0.096 Sum_probs=54.4
Q ss_pred ceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEe
Q 008366 443 TSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRA 522 (568)
Q Consensus 443 ~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 522 (568)
.+.+.++.|+.|++.+...+ ..|.|.+-+-.++ +..-||-...+.+++
T Consensus 136 ~n~l~lPv~~~V~f~ltS~D----ViHsF~IP~l~~k----------------------------~d~iPG~~~~~~~~~ 183 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSAD----VIHSFWIPQLGGK----------------------------IDAIPGMTTELWLTA 183 (247)
T ss_pred cceEEEeCCCeEEEEEEech----hceeEEecCCCce----------------------------eeecCCceEEEEEec
Confidence 36778999999999998643 6666554433222 234566788899999
Q ss_pred cCceeEEEEeecccccc-cccEEEEEEec
Q 008366 523 NNPGVWFMHCHFDVHLP-WGLATTFIVEN 550 (568)
Q Consensus 523 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 550 (568)
+.+|.|-.+|+..--.. ..|-..++|..
T Consensus 184 ~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs 212 (247)
T COG1622 184 NKPGTYRGICAEYCGPGHSFMRFKVIVVS 212 (247)
T ss_pred CCCeEEEEEcHhhcCCCcccceEEEEEEc
Confidence 99999999999988555 45556666654
No 83
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=64.47 E-value=26 Score=26.60 Aligned_cols=65 Identities=15% Similarity=0.316 Sum_probs=38.0
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEe
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAAR 285 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~ 285 (568)
..+++++|+++++.+-+.+. .-.+.+...+|..+....... -..+..-.+.+.+. .+|+|+|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCEEEEEEEE
Confidence 57899999999999877664 222556666654332111000 01123344455666 7899999864
No 84
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=63.42 E-value=72 Score=25.55 Aligned_cols=63 Identities=13% Similarity=0.217 Sum_probs=41.4
Q ss_pred CCeEEEe---cCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEe
Q 008366 55 GPTIRVQ---EGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWH 126 (568)
Q Consensus 55 GP~i~v~---~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH 126 (568)
.|.+.++ ....|+|+|.|....+..+........ .+. ..+..|+||++.+..|.+ ...--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y~-----~~~--~~~~~v~ag~~~~~~w~l--~~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAYG-----GGG--PWTYTVAAGQTVSLTWPL--AASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCcC-----CCC--CEEEEECCCCEEEEEEee--cCCCCcEE
Confidence 3555554 234899999999888888777653221 111 134579999999999986 33334554
No 85
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=59.13 E-value=24 Score=34.04 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=44.4
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+||++.... .. |.|.| |.-.-....-||..-.+.++++ .+|.|...|..+-
T Consensus 139 nel~lP~g~pV~~~ltS~D---Vi------HSF~V---------P~l~~K~DaiPG~~n~~~~~~~-~~G~y~g~CaE~C 199 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS---VM------NSFFI---------PQLGSQIYAMAGMQTKLHLIAN-EPGVYDGISANYS 199 (226)
T ss_pred ceEEEECCCEEEEEEEECc---hh------hhhhh---------hhcCCeeecCCCceEEEEEEeC-CCEEEEEEchhhc
Confidence 4789999999999986554 22 45555 3222233444899999999998 7999999998654
Q ss_pred C
Q 008366 289 A 289 (568)
Q Consensus 289 ~ 289 (568)
.
T Consensus 200 G 200 (226)
T TIGR01433 200 G 200 (226)
T ss_pred C
Confidence 3
No 86
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=57.43 E-value=40 Score=27.46 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=42.0
Q ss_pred EEEcCcEEEEEEE--eccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEE-EECCCceEEEEEEeCCC--CceeEEEEee
Q 008366 212 KVEKGKTYLLRII--NAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVV-VIAPGQTTDVLLKADQP--VGSYYMAARA 286 (568)
Q Consensus 212 ~v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~-~l~pg~r~dv~~~~~~~--~g~y~~~~~~ 286 (568)
.-+|||++.||.+ +....... ..-....++|..-+|..+ ..... .......++..+..+++ .|.|.|....
T Consensus 10 iYrPGetV~~~~~~~~~~~~~~~-~~~~~~~v~i~dp~g~~v---~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 10 IYRPGETVHFRAIVRDLDNDFKP-PANSPVTVTIKDPSGNEV---FRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp EE-TTSEEEEEEEEEEECTTCSC-ESSEEEEEEEEETTSEEE---EEEEEEETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred CcCCCCEEEEEEEEecccccccc-ccCCceEEEEECCCCCEE---EEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 5689999999988 66621010 111123466666666433 12223 34577888888888864 5999999887
Q ss_pred c
Q 008366 287 Y 287 (568)
Q Consensus 287 ~ 287 (568)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 87
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=54.79 E-value=27 Score=33.49 Aligned_cols=61 Identities=23% Similarity=0.374 Sum_probs=44.4
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+||++.... .. |.|.| |.-.-....-||..-.+.++++ .+|.|...|..+-
T Consensus 130 n~l~iP~g~~v~~~ltS~D---Vi------Hsf~v---------P~l~~k~daiPG~~~~~~~~~~-~~G~y~g~Cae~C 190 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSAD---TM------TSFWI---------PQLGGQKYAMTGMTMNWYLQAD-QVGTYRGRNANFN 190 (217)
T ss_pred CcEEEECCCEEEEEEECCc---hh------hhhhc---------hhhCceeecCCCceEEEEEEeC-CCEEEEEEehhhc
Confidence 4688999999999986554 22 45555 3323333444999999999998 7999999998653
No 88
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=53.94 E-value=62 Score=25.09 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=30.0
Q ss_pred EcCcE--EEEEEEeccCCC--eEEEEEcCceeEEEEecCCCC--CcEEEeEEEECCCceEEEEEEeC--C--CCceeEEE
Q 008366 214 EKGKT--YLLRIINAALNN--QLFFKIANHKFTVVAVDAGYT--DPYVTDVVVIAPGQTTDVLLKAD--Q--PVGSYYMA 283 (568)
Q Consensus 214 ~~G~~--~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~--~p~~~d~~~l~pg~r~dv~~~~~--~--~~g~y~~~ 283 (568)
.+|+. +++.+.|.+... ...+++. .-+|-.+ .+.... .|.||+...+.|+.. . .+|+|.|.
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~-------~P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLS-------LPEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEe-------CCCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 45655 467788988543 2334332 2333322 233333 889997766555544 2 47999887
Q ss_pred Eee
Q 008366 284 ARA 286 (568)
Q Consensus 284 ~~~ 286 (568)
...
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 89
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.71 E-value=38 Score=32.71 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=43.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+||++.+... .|+|.+.+... .+..-||..-.+.++++ .||.|...|..+-
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~----------------k~d~~Pg~~~~~~~~~~-~~g~y~~~C~e~C 200 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--IHSWTVPSLGV----------------KVDAIPGRLNQLSFEPK-RPGVFYGQCSEIC 200 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--ccceeccccCc----------------eeECCCCcceeEEEEeC-CCEEEEEECcccc
Confidence 46899999999999977542 23344433222 23444899999999998 7999999998644
No 90
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=51.86 E-value=22 Score=30.15 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=28.9
Q ss_pred EEEEEeCCCCC---eeEEEcccc-----ccCCCCCCCCCCcccccCCCCCeEEEEEEe
Q 008366 67 IVHVSNESPYN---ITIHWHGIF-----QIRSIWADGPNMITQCPIRPGNSYTYKFRI 116 (568)
Q Consensus 67 ~i~l~N~l~~~---~~iH~HG~~-----~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~ 116 (568)
.|++.|+...+ .+=|||=-+ ..... +||-| .|-.|+||++|+|.=-+
T Consensus 33 titI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G--~GVVG-eQP~l~PG~~y~YtSg~ 87 (126)
T COG2967 33 TVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEG--EGVVG-EQPLLAPGEEYQYTSGC 87 (126)
T ss_pred EEEEecCCCccceeeeeEEEEecCCCcEEEEEc--Cceec-cccccCCCCceEEcCCc
Confidence 46777776544 456887332 22222 45544 35679999999997544
No 91
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=50.29 E-value=21 Score=28.92 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=28.5
Q ss_pred EEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC----CcEEEeEEEECCCceEEE
Q 008366 218 TYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT----DPYVTDVVVIAPGQTTDV 269 (568)
Q Consensus 218 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~~~l~pg~r~dv 269 (568)
.|++||.|.+.. .+.|-...|.+...||... ..+....=.|.||+.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 489999999866 3566677788877777432 112224557888886544
No 92
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=49.37 E-value=71 Score=28.93 Aligned_cols=61 Identities=11% Similarity=0.162 Sum_probs=40.8
Q ss_pred EEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeeccC
Q 008366 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYAA 289 (568)
Q Consensus 210 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~~ 289 (568)
.+.+..|+.+||++.-.... |.|.+..-..++ | .-||..-.+.+.+. .+|.|+..|..+-.
T Consensus 74 ~LvLP~g~~Vr~~lTS~DVI--HSF~VP~lgvK~-------------D---avPGr~n~l~~~~~-~~G~y~gqCsElCG 134 (162)
T PTZ00047 74 RLTLPTRTHIRFLITATDVI--HSWSVPSLGIKA-------------D---AIPGRLHKINTFIL-REGVFYGQCSEMCG 134 (162)
T ss_pred CEEEeCCCEEEEEEEeCccc--eeeeccccCcee-------------e---ccCCceEEEEEecC-CCeEEEEEcchhcC
Confidence 57889999999988555422 334444332222 3 33787777888887 79999999986543
No 93
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=49.35 E-value=1.7e+02 Score=26.05 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=39.4
Q ss_pred CceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCC-----CeeEEEc--c-cccc-CCCCCCCCCCc-----ccccCC
Q 008366 40 LCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPY-----NITIHWH--G-IFQI-RSIWADGPNMI-----TQCPIR 105 (568)
Q Consensus 40 ~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~-----~~~iH~H--G-~~~~-~~~~~DG~~~~-----~~~~i~ 105 (568)
+|+..++-.=|.-.+ .=.+..|.+..|.+.=...+ .+.+|-- | ..++ +....||-... --||+.
T Consensus 34 ~g~~~~V~i~~C~t~--pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~ 111 (158)
T KOG4063|consen 34 DGTPLEVKIDGCPTT--PCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLS 111 (158)
T ss_pred CCcceEEEecCCCCC--ceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCccc
Confidence 455555544443332 44567788766655444322 1222211 1 2211 12224553322 359999
Q ss_pred CCCeEEEEEEeC
Q 008366 106 PGNSYTYKFRII 117 (568)
Q Consensus 106 PG~~~~y~f~~~ 117 (568)
+||.++|.+..+
T Consensus 112 age~ytY~~slp 123 (158)
T KOG4063|consen 112 AGEDYTYLNSLP 123 (158)
T ss_pred CCCceEEEEEee
Confidence 999999999873
No 94
>PRK13202 ureB urease subunit beta; Reviewed
Probab=48.31 E-value=47 Score=27.50 Aligned_cols=65 Identities=18% Similarity=0.162 Sum_probs=43.0
Q ss_pred eEEEecC--CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG--DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G--d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|.+++| +++.|+++|..++++ .-|+|=.+....---| | .|.-|.....||++.+.+.. .-.|.-
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~r 89 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLV--PLGGRR 89 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEE--EccCCe
Confidence 4889999 689999999998875 4577766654321112 1 22234456788988888775 345543
No 95
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=48.12 E-value=40 Score=29.31 Aligned_cols=49 Identities=16% Similarity=0.302 Sum_probs=33.9
Q ss_pred EEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC----CcEEEeEEEECCCceEEE
Q 008366 218 TYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT----DPYVTDVVVIAPGQTTDV 269 (568)
Q Consensus 218 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~~~l~pg~r~dv 269 (568)
.|++||.|.+.. ...|-+.+|.+...||... ..+...+=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 478999998743 3667778888888887532 223445567888886644
No 96
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=45.62 E-value=56 Score=28.16 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=44.3
Q ss_pred EEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCC
Q 008366 219 YLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQ 275 (568)
Q Consensus 219 ~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~ 275 (568)
..|-+.|.+....+.+ .+......+|..++.+-..-+.|.|-+..++.++-.+
T Consensus 27 ~tLSiRNtd~~~~i~i----~~v~Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D 79 (125)
T PF11322_consen 27 ATLSIRNTDPTDPIYI----TSVDYYDTDGKLVRSYLDKPIYLKPLATTEFVVEESD 79 (125)
T ss_pred EEEEEEcCCCCCCEEE----EEEEEECCCCeEhHHhcCCCeEcCCCceEEEEEeccc
Confidence 4677888887766644 5677889999999999999999999999999999775
No 97
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=45.25 E-value=72 Score=26.66 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=43.0
Q ss_pred EEEEEeCCCCCe--eEEEccccccCCCCCC-CCCCcccccCCCCCeEEEEEEeCCCCCceeEecChhhhhhcceEEEEEe
Q 008366 67 IVHVSNESPYNI--TIHWHGIFQIRSIWAD-GPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHISMLRATVHGAFIIR 143 (568)
Q Consensus 67 ~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-G~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~ 143 (568)
.|+++|.|.... .+|..--.- | |+ ..|.||+.+.++|.. .-.|+-.|.|+..-.......-+.|.
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~d~------Dlg~-----~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~~~~~~~~~f~vy 69 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSKDD------DLGW-----HVLKPGQSYSFSFRD-NFFGTTLFWCHFRWPGGKYHHSFDVY 69 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCCCc------cCCC-----EECCCCCEEEEEEec-CcCCceeEEEEEEECCccEEEEEEEE
Confidence 488999995444 455533320 2 32 359999999999986 66677788898865111235666665
Q ss_pred cC
Q 008366 144 PK 145 (568)
Q Consensus 144 ~~ 145 (568)
..
T Consensus 70 ~~ 71 (110)
T PF05938_consen 70 RS 71 (110)
T ss_pred ec
Confidence 43
No 98
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=45.13 E-value=94 Score=30.04 Aligned_cols=17 Identities=18% Similarity=0.268 Sum_probs=12.5
Q ss_pred CeEEEecCCEEEEEEEe
Q 008366 56 PTIRVQEGDTLIVHVSN 72 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N 72 (568)
|.+|++.|++-.||+.-
T Consensus 80 Plfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 80 PLFVIQPKKENILRIMY 96 (228)
T ss_pred CeEEECCCCceEEEEEE
Confidence 77888888877777653
No 99
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=44.96 E-value=1.6e+02 Score=23.47 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=40.5
Q ss_pred EEEcCcEE--EEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEE-EECCCceEEEEEEeCC-CCceeEEEEeec
Q 008366 212 KVEKGKTY--LLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVV-VIAPGQTTDVLLKADQ-PVGSYYMAARAY 287 (568)
Q Consensus 212 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~-~l~pg~r~dv~~~~~~-~~g~y~~~~~~~ 287 (568)
.+..|+.+ .+.+.|.|....-.+.+. +-.||..+ ....+ .|.+|+...+.|...- .+|.|.+.....
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD 84 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVID 84 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEe
Confidence 55667765 467899987764444332 23455443 33344 7899998888777663 579998887764
Q ss_pred c
Q 008366 288 A 288 (568)
Q Consensus 288 ~ 288 (568)
.
T Consensus 85 ~ 85 (101)
T PF07705_consen 85 P 85 (101)
T ss_dssp T
T ss_pred e
Confidence 4
No 100
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=44.73 E-value=67 Score=31.03 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=42.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
-.+.+..|+.+|+++.+... .|+|.+.+-.. ....-||..-.+.++++ .+|.|+..|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~vP~~~~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAADV--IHSWTVPSLGV----------------KVDAVPGRLNQIGFTIT-RPGVFYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEeCCc--cccccccccCc----------------ceecCCCceEEEEEEeC-CCEEEEEEChhhc
Confidence 46889999999999977542 23333333222 22334899999999988 7899999998643
No 101
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=43.34 E-value=1.1e+02 Score=29.43 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=53.9
Q ss_pred ceEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEe
Q 008366 443 TSVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRA 522 (568)
Q Consensus 443 ~~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~a 522 (568)
.+.+.++.|..|++.+.+.+ ..|.|.+-....+ . ..-||....+.|.+
T Consensus 139 ~n~l~lP~~~~v~~~~ts~D----ViHsf~ip~~~~k-------------------------~---d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSAD----VIHSWTVPSLGVK-------------------------V---DAIPGRLNQLSFEP 186 (228)
T ss_pred CCeEEEeeCcEEEEEEEcCc----cccceeccccCce-------------------------e---ECCCCcceeEEEEe
Confidence 36778999999999998743 6666554322111 2 33477888899999
Q ss_pred cCceeEEEEeecccccc-cccEEEEEEec
Q 008366 523 NNPGVWFMHCHFDVHLP-WGLATTFIVEN 550 (568)
Q Consensus 523 dnpG~w~~HCHil~H~d-~GM~~~~~V~~ 550 (568)
+.||.+...|.-.-... ..|-..++|.+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVVEAVP 215 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEEEEEC
Confidence 99999999999887654 45666666654
No 102
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.44 E-value=97 Score=28.75 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEec---------CC--EEEEEEEeCC
Q 008366 6 LLLACALVVLASSTFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQE---------GD--TLIVHVSNES 74 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~---------Gd--~v~i~l~N~l 74 (568)
|+++++++|..++.+..+. ++.|.+.. |+ +|.+++.|.+
T Consensus 1 ~~~~~~~~l~~~~~~~~~~------------------------------~a~llv~K~il~~~~v~g~~v~V~~~iyN~G 50 (181)
T PF05753_consen 1 MALFLLALLALASVAQEDS------------------------------PARLLVSKQILNKYLVEGEDVTVTYTIYNVG 50 (181)
T ss_pred ChhhhHHHHHHHHhccCCC------------------------------CcEEEEEEeeccccccCCcEEEEEEEEEECC
Q ss_pred CCC---eeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeC-CCCCce
Q 008366 75 PYN---ITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRII-NQEGTL 123 (568)
Q Consensus 75 ~~~---~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~-~~~Gt~ 123 (568)
..+ ..|.=.+.....-....|....+-..|+||++.++.|.+. ...|.|
T Consensus 51 ~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~~G~f 103 (181)
T PF05753_consen 51 SSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKKSGYF 103 (181)
T ss_pred CCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeeeeEEE
No 103
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=42.11 E-value=54 Score=33.68 Aligned_cols=95 Identities=21% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhccccCCceEEEEEEEEEEe-eccC-----ceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCC-
Q 008366 5 MLLLACALVVLASSTFASAAVVEHSFQVKNLT-IGRL-----CRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYN- 77 (568)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~- 77 (568)
++..++++++...+.+...--+..-|.+.... +.+. -+...+..-+=++||-+++ +.++++|+.+++
T Consensus 206 ~~~~tl~lV~~g~~~t~~~yP~tIPlQag~~~~i~pl~~~~~~V~~~v~~A~Y~vpgR~l~------~~l~VtN~g~~pv 279 (381)
T PF04744_consen 206 FLAGTLVLVIGGYAYTNSKYPITIPLQAGLLRPIKPLPVPPNSVKVKVTDATYRVPGRTLT------MTLTVTNNGDSPV 279 (381)
T ss_dssp HHHHHHHHHHHHHHHHCHSSSS------S-BS------SS-SSEEEEEEEEEEESSSSEEE------EEEEEEEESSS-B
T ss_pred HHHHHHHHHhhhHhhhhhcCCCccccccccccCcccCCCCCCceEEEEeccEEecCCcEEE------EEEEEEcCCCCce
Q ss_pred --------------------------eeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEe
Q 008366 78 --------------------------ITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRI 116 (568)
Q Consensus 78 --------------------------~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~ 116 (568)
-.+---|+.+.+.. ||+|||+.+.+..+
T Consensus 280 ~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~-----------pI~PGETrtl~V~a 333 (381)
T PF04744_consen 280 RLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNS-----------PIAPGETRTLTVEA 333 (381)
T ss_dssp EEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S------------B-TT-EEEEEEEE
T ss_pred EeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCC-----------CcCCCceEEEEEEe
No 104
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=41.26 E-value=76 Score=30.64 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=41.4
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
-.+.+..|+.+||++.-... .|.|.+..... +.| .-||..-.+.+.++ .||.|+..|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~lg~-------------k~d---aiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (227)
T MTH00098 140 NRVVLPMEMPIRMLISSEDV--LHSWAVPSLGL-------------KTD---AIPGRLNQTTLMST-RPGLYYGQCSEIC 200 (227)
T ss_pred ceEEecCCCEEEEEEEECcc--ccccccccccc-------------cee---cCCCceEEEEEecC-CcEEEEEECcccc
Confidence 36788999999998855442 23333333222 223 33898888889888 7999999998643
No 105
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.16 E-value=2.6e+02 Score=26.26 Aligned_cols=75 Identities=11% Similarity=0.130 Sum_probs=53.4
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
..+.++.|+.+++.+... +..|.|.+-.... .+| .-||-...+.|.++
T Consensus 116 ~~l~lp~g~~v~~~ltS~----DViHsf~vp~l~~-------------------------k~d---~~PG~~~~~~~~~~ 163 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSS----DVIHSFSVPDLNL-------------------------KMD---AIPGRINHLFFCPD 163 (194)
T ss_pred ceEEEeCCCEEEeeeecC----ccccceeccccCc-------------------------eee---cCCCceEEEEEEcC
Confidence 557789999999999754 3777766643221 133 33778889999999
Q ss_pred CceeEEEEeecccccc-cccEEEEEEec
Q 008366 524 NPGVWFMHCHFDVHLP-WGLATTFIVEN 550 (568)
Q Consensus 524 npG~w~~HCHil~H~d-~GM~~~~~V~~ 550 (568)
.+|.+-.-|.-.--.. ..|-..++|.+
T Consensus 164 ~~G~y~g~C~e~CG~~H~~M~~~v~v~~ 191 (194)
T MTH00047 164 RHGVFVGYCSELCGVGHSYMPIVIEVVD 191 (194)
T ss_pred CCEEEEEEeehhhCcCcccCcEEEEEEc
Confidence 9999999998876443 45666666654
No 106
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=41.10 E-value=1.3e+02 Score=28.66 Aligned_cols=90 Identities=14% Similarity=0.198 Sum_probs=63.7
Q ss_pred ccCceeeeEEEECCCCCCCeEEEecCCEEEEEEEeCCCCC-----eeEEEccccccCCCCCCCCCCcccccCCCCCeEEE
Q 008366 38 GRLCRQQTITAVNGSLPGPTIRVQEGDTLIVHVSNESPYN-----ITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTY 112 (568)
Q Consensus 38 ~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~~~-----~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y 112 (568)
+++|..--.+++.|-+---.|.|..|..+|+++.-..+.+ .+-.||+.. .++-++-...
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgiaa----------------nlpl~q~ssI 142 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIAA----------------NLPLNQVSSI 142 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhcccccccccc----------------cCCcCceeEE
Confidence 4444444455666655436899999999999998886543 333333331 2555888888
Q ss_pred EEEeCCCCCceeEecChhhhhhcceEEEEEecCCCC
Q 008366 113 KFRIINQEGTLWWHAHISMLRATVHGAFIIRPKSGH 148 (568)
Q Consensus 113 ~f~~~~~~Gt~~YH~h~~~~~~Gl~G~liV~~~~~~ 148 (568)
+|+. .++|.|-+-|.....+ |.++|++....
T Consensus 143 e~T~-~s~ge~af~cgmnm~~----G~~~vet~~~~ 173 (272)
T COG4633 143 EFTP-ISKGEYAFLCGMNMFR----GNIQVETLTGK 173 (272)
T ss_pred Eecc-ccccchhhhcchhhcc----CeeEEEecCCc
Confidence 9985 9999999999887766 99999887654
No 107
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.03 E-value=70 Score=30.93 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=41.9
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
-.+.+..|+.+|+++.-... .|+|.+.+... .+..-||.+-.+.++++ .+|.|+..|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--iHsf~ip~~~~----------------k~da~PG~~~~~~~~~~-~~G~~~g~C~e~C 200 (230)
T MTH00129 140 HRMVVPVESPIRVLVSAEDV--LHSWAVPALGV----------------KMDAVPGRLNQTAFIAS-RPGVFYGQCSEIC 200 (230)
T ss_pred ceEEEecCcEEEEEEEeCcc--ccceeccccCC----------------ccccCCCceEEEEEEeC-CceEEEEEChhhc
Confidence 46889999999999855442 23333333222 23344899999999988 7999999998643
No 108
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=39.99 E-value=23 Score=29.21 Aligned_cols=30 Identities=30% Similarity=0.427 Sum_probs=26.6
Q ss_pred EEEECCCCCCCeEEEecCCEEEEEEEeCCC
Q 008366 46 ITAVNGSLPGPTIRVQEGDTLIVHVSNESP 75 (568)
Q Consensus 46 ~~~~NG~~pGP~i~v~~Gd~v~i~l~N~l~ 75 (568)
-+.+||+.--|-=.|+.||.|.|++.|..-
T Consensus 35 rV~vNG~~aKpS~~VK~GD~l~i~~~~~~~ 64 (100)
T COG1188 35 RVKVNGQRAKPSKEVKVGDILTIRFGNKEF 64 (100)
T ss_pred eEEECCEEcccccccCCCCEEEEEeCCcEE
Confidence 567999988899999999999999999853
No 109
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=38.92 E-value=55 Score=33.25 Aligned_cols=64 Identities=16% Similarity=0.318 Sum_probs=46.3
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+||++...... |.|.| |.-.-.+..-||..-.+.+.++ .+|.|...|..+-
T Consensus 151 NeL~iP~g~pV~f~lTS~DVi---------HSF~I---------P~Lg~K~damPG~~n~l~~~a~-~~G~Y~G~CaEyC 211 (315)
T PRK10525 151 NEIAFPANVPVYFKVTSNSVM---------NSFFI---------PRLGSQIYAMAGMQTRLHLIAN-EPGTYDGISASYS 211 (315)
T ss_pred ccEEEecCCEEEEEEEEchhh---------hhhhh---------hhhCCeeecCCCceeEEEEEcC-CCEEEEEEChhhc
Confidence 467899999999999666533 44444 3333344555898888999998 7999999998765
Q ss_pred CCC
Q 008366 289 APP 291 (568)
Q Consensus 289 ~~~ 291 (568)
...
T Consensus 212 G~g 214 (315)
T PRK10525 212 GPG 214 (315)
T ss_pred Ccc
Confidence 443
No 110
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.77 E-value=1e+02 Score=29.91 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=41.7
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeec
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAY 287 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~ 287 (568)
..+.+..|+.+|+++..... .|+|.+.+... +.| .-||..-.+.+.++ .+|.|+..|..+
T Consensus 144 n~lvlP~~~~v~~~itS~DV--iHsf~vp~lg~-------------k~d---aiPG~~~~~~~~~~-~~G~y~g~Cse~ 203 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAADV--LHSFAVPSLSV-------------KID---AVPGRLNQTSFFIK-RPGVFYGQCSEI 203 (234)
T ss_pred eEEEEecCcEEEEEEEeCch--hccccccccCc-------------eeE---ccCCceEeEEEEeC-CCEEEEEEChhh
Confidence 46889999999999977642 23333333222 223 33888888888888 789999999864
No 111
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.63 E-value=1.2e+02 Score=29.29 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=42.0
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++.-... .|+|.+..-.. +.|. -||..-.+.++++ .+|.|...|..+-
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vp~l~~-------------k~da---vPG~~~~~~~~~~-~~G~y~g~Cse~C 200 (227)
T MTH00154 140 NRLVLPMNTQIRILITAADV--IHSWTVPSLGV-------------KVDA---VPGRLNQLNFLIN-RPGLFFGQCSEIC 200 (227)
T ss_pred ceEEEecCCEEEEEEEcCch--hhheeccccCC-------------eeec---CCCceEEEEEEEc-CceEEEEEeechh
Confidence 46899999999998854442 23333332222 2333 3898888899988 7899999998653
No 112
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=36.22 E-value=2.6e+02 Score=24.11 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=40.7
Q ss_pred EEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC-------CcEEEeEEEECCCceEEEEEEeCC
Q 008366 210 KLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT-------DPYVTDVVVIAPGQTTDVLLKADQ 275 (568)
Q Consensus 210 ~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~~~l~pg~r~dv~~~~~~ 275 (568)
.|++.....|+|++...+ ...+.|+|..+ ++.++..- ......++.|..|++++|.|+..+
T Consensus 53 ~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 356666667999997333 56678888765 55555432 345667888999999999988763
No 113
>PRK13203 ureB urease subunit beta; Reviewed
Probab=35.17 E-value=1e+02 Score=25.51 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=42.4
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|.+++| +++.|+++|..++++ .-|+|=.+....---| | .|.-|.....||++.+.+.. +-.|.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~r 88 (102)
T PRK13203 12 EIELNAGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELV--PLAGAR 88 (102)
T ss_pred CEEeCCCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEE--EccCce
Confidence 4778888 789999999998875 4577766654321112 1 22234456788888888774 445544
No 114
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.92 E-value=1.3e+02 Score=29.20 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=41.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++.-.. -.|.|.+.+... .+..-||..-.+.+.++ .+|.|...|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~----------------k~daiPG~~~~~~~~~~-~~G~~~g~Cse~C 200 (230)
T MTH00185 140 HRMVVPMESPIRVLITAED--VLHSWTVPALGV----------------KMDAVPGRLNQATFIIS-RPGLYYGQCSEIC 200 (230)
T ss_pred CeEEEecCCEEEEEEEcCc--ccccccccccCc----------------eeEecCCceEEEEEEeC-CcEEEEEEchhhc
Confidence 4688999999999985444 223334333222 22334888888888888 7899999998643
No 115
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.65 E-value=1.3e+02 Score=29.35 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=41.4
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++.-.. -.|+|.+..-.. +.|.+ ||..-.+.++++ .+|.|...|..+-
T Consensus 151 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lgv-------------K~Dai---PG~~n~~~~~~~-~~G~y~g~C~e~C 211 (240)
T MTH00023 151 NRLVVPINTHVRILVTGAD--VLHSFAVPSLGL-------------KIDAV---PGRLNQTGFFIK-RPGVFYGQCSEIC 211 (240)
T ss_pred ceEEEecCCEEEEEEEcCC--cccceeecccCc-------------eeecC---CCcceeEEEEcC-CCEEEEEEchhhc
Confidence 3688999999999885443 233344443322 23333 788888888888 7999999998643
No 116
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=34.09 E-value=1.3e+02 Score=29.00 Aligned_cols=75 Identities=15% Similarity=0.197 Sum_probs=52.3
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
+.+.++.|+.|++.+...+ ..|. |+|=+.+ ..+|.+ ||-...+.|+++
T Consensus 139 nel~lP~g~pV~~~ltS~D----ViHS-------F~VP~l~------------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNS----VMNS-------FFIPQLG------------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred ceEEEECCCEEEEEEEECc----hhhh-------hhhhhcC------------------CeeecC---CCceEEEEEEeC
Confidence 5668899999999998643 5565 4454432 124444 677888999999
Q ss_pred CceeEEEEeecccccc-cccEEEEEEec
Q 008366 524 NPGVWFMHCHFDVHLP-WGLATTFIVEN 550 (568)
Q Consensus 524 npG~w~~HCHil~H~d-~GM~~~~~V~~ 550 (568)
.||.|.-.|--.--.. ..|...++|.+
T Consensus 187 ~~G~y~g~CaE~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 187 EPGVYDGISANYSGPGFSGMKFKAIATD 214 (226)
T ss_pred CCEEEEEEchhhcCcCccCCeEEEEEEC
Confidence 9999999997665432 45666666654
No 117
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=32.82 E-value=62 Score=28.12 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=12.2
Q ss_pred CCCCCcccccCCCCCeEEEEE
Q 008366 94 DGPNMITQCPIRPGNSYTYKF 114 (568)
Q Consensus 94 DG~~~~~~~~i~PG~~~~y~f 114 (568)
+||-| .|-.|.||++|.|.=
T Consensus 67 ~GVVG-~qP~L~PGe~F~Y~S 86 (127)
T PRK05461 67 EGVVG-EQPVLAPGESFEYTS 86 (127)
T ss_pred Cceec-CCceECCCCCeEEeC
Confidence 45433 234579999877753
No 118
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=32.64 E-value=1.3e+02 Score=24.95 Aligned_cols=65 Identities=20% Similarity=0.238 Sum_probs=41.8
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|.+++| +++.|+++|..++++ .-|+|=.+....---| | .|.-|.....||++.+.+.. +-.|.-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~~G~r 88 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELV--PIGGKR 88 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEE--EccCce
Confidence 4777777 589999999998875 4577766654322112 1 22234456788888888774 345543
No 119
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.44 E-value=1.1e+02 Score=29.53 Aligned_cols=61 Identities=23% Similarity=0.279 Sum_probs=41.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+||++.-.. .. |.|.|-+. ..+.|.+ ||..-.+.++++ .+|.|...|..+=
T Consensus 140 n~l~lP~~~~v~~~~tS~D---Vi------Hsf~vP~l------~~K~Dai---PG~~n~~~~~~~-~~G~y~g~CsE~C 200 (226)
T MTH00139 140 NRLVLPYKSNIRALITAAD---VL------HSWTVPSL------GVKIDAV---PGRLNQVGFFIN-RPGVFYGQCSEIC 200 (226)
T ss_pred ceEEEecCCEEEEEEecCc---cc------cceecccc------CccccCC---CCcEEEEEEEcC-CCEEEEEEChhhc
Confidence 4689999999999885443 22 44444111 1233444 788888888888 7999999998643
No 120
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.37 E-value=1.3e+02 Score=29.04 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=41.3
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
-.+.+..|+.+|+++.-.. -.|+|.+.+..++ .|. -||..-.+.+.++ .+|.|+..|..+-
T Consensus 140 n~l~lP~~~~v~~~~tS~D--ViHsf~vP~lg~k-------------~da---~PG~~n~~~~~~~-~~G~~~g~C~e~C 200 (228)
T MTH00076 140 NRMVVPMESPIRMLITAED--VLHSWAVPSLGIK-------------TDA---IPGRLNQTSFIAS-RPGVYYGQCSEIC 200 (228)
T ss_pred ceEEEecCCEEEEEEEecc--ccccccccccCce-------------EEc---cCCcceeEEEEeC-CcEEEEEEChhhc
Confidence 3688999999999985543 2333444333222 233 3788888888888 7899999998643
No 121
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=31.02 E-value=1.4e+02 Score=24.71 Aligned_cols=65 Identities=26% Similarity=0.288 Sum_probs=42.3
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|++++| +++.|.++|..++++ .-|+|=.+....---| | .|.-|.....||++.+.+.. +-.|.-
T Consensus 12 ~I~ln~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV--~~gG~r 88 (101)
T TIGR00192 12 DITINEGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELV--AIGGNR 88 (101)
T ss_pred CEEeCCCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEE--EccCce
Confidence 4788888 689999999998875 4577766654321112 1 22234456788998888775 344543
No 122
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.72 E-value=1.8e+02 Score=28.02 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=41.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
-.+.+..|+.+|+++.-... . |.|.+-+. ..+.|.+ ||..-.+.++++ .+|.|+..|..+=
T Consensus 140 n~lvlP~~~~v~~~~tS~DV--i-------Hsf~vP~l------g~K~Dav---PG~~n~~~~~~~-~~G~y~g~CsE~C 200 (227)
T MTH00117 140 HRMVIPMESPIRILITAEDV--L-------HSWAVPSL------GVKTDAV---PGRLNQTSFITT-RPGVFYGQCSEIC 200 (227)
T ss_pred ceEEEecCceEEEEEEecch--h-------hccccccc------CceeEec---CCceEEEEEEEc-ccceEEEEecccc
Confidence 36889999999998855442 2 44444111 1223433 899888899988 7899999998643
No 123
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=30.38 E-value=2.2e+02 Score=29.68 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=26.2
Q ss_pred EeCCCcEEEEEEEecCceeEEEEeecccccccccEEEEEEecC
Q 008366 509 AVPIGGWAVIRFRANNPGVWFMHCHFDVHLPWGLATTFIVENG 551 (568)
Q Consensus 509 ~vp~~g~~~irf~adnpG~w~~HCHil~H~d~GM~~~~~V~~~ 551 (568)
.|.||....+.+.. .||.|-|+| ..| ..|-+.|+|..+
T Consensus 81 nIaPG~s~~l~~~L-~pGtY~~~C--~~~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 81 NIAPGFSQKMTANL-QPGEYDMTC--GLL--TNPKGKLIVKGE 118 (375)
T ss_pred ccCCCCceEEEEec-CCceEEeec--CcC--CCCCceEEEeCC
Confidence 56677655555444 599999999 556 345777888753
No 124
>PF02102 Peptidase_M35: Deuterolysin metalloprotease (M35) family; InterPro: IPR001384 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M35 (deuterolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Deuterolysin is a microbial zinc-containing metalloprotease that shows some similarity to thermolysin []. The protein is expressed with a possible 19-residue signal sequence, a 155-residue propeptide, and an active peptide of 177 residues []. The latter contains an HEXXH motif towards the C terminus, but the other zinc ligands are as yet undetermined [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 1EB6_A.
Probab=29.99 E-value=17 Score=37.47 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=0.0
Q ss_pred eeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEec
Q 008366 78 ITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHA 127 (568)
Q Consensus 78 ~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~ 127 (568)
..+-|.|+..... +++.....-..|+||++++-+|.+ +.+|+...
T Consensus 78 ~~V~F~Gi~~~~~--~~~L~~d~F~~L~pG~sve~~fDi---A~~~dLs~ 122 (359)
T PF02102_consen 78 KEVPFTGIRLRYD--TSGLTEDAFQTLAPGESVEVEFDI---AETHDLSS 122 (359)
T ss_dssp --------------------------------------------------
T ss_pred cccccccEEEEEe--cCCCCHHHceecCCCCeEEEEEcc---hheeecCC
Confidence 4455666655433 244333233579999999999976 66776643
No 125
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=29.79 E-value=1.8e+02 Score=24.92 Aligned_cols=75 Identities=15% Similarity=0.068 Sum_probs=42.5
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEE----EeEEEECCCceEEEEEEeCC--CCceeEE
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYV----TDVVVIAPGQTTDVLLKADQ--PVGSYYM 282 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~----~d~~~l~pg~r~dv~~~~~~--~~g~y~~ 282 (568)
+.-.+..|+.+++++-=........+. -.+.+...+|..+-... ...+....++++.+.++++. .+|.|.+
T Consensus 27 ~~~~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i 103 (142)
T PF14524_consen 27 PTSSFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSI 103 (142)
T ss_dssp S-SSEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEE
T ss_pred EeeEEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEE
Confidence 334578899998887655544333332 24556666675542211 12444444889999888885 5899999
Q ss_pred EEee
Q 008366 283 AARA 286 (568)
Q Consensus 283 ~~~~ 286 (568)
.+..
T Consensus 104 ~v~l 107 (142)
T PF14524_consen 104 SVGL 107 (142)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9887
No 126
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=29.57 E-value=2.8e+02 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.184 Sum_probs=15.4
Q ss_pred EEEcCcEEEEEEEeccCCCeEEEEE
Q 008366 212 KVEKGKTYLLRIINAALNNQLFFKI 236 (568)
Q Consensus 212 ~v~~G~~~rlRliN~~~~~~~~~~i 236 (568)
..+.||+++|++-..-....+-|.+
T Consensus 2 ~~~~Ge~v~~~~~~~~~~Yl~l~~~ 26 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNRDGYLYLFYI 26 (83)
T ss_pred cccCCCEEEEEEEeCCCeEEEEEEE
Confidence 3577899998887744333333444
No 127
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=29.47 E-value=3.5e+02 Score=24.59 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=49.7
Q ss_pred eEEEcccCCEEEEEEEeCCcCCCCCCceeecCCcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEec
Q 008366 444 SVKMLKFNSTVEMVLQNTALIAVESHPMHLHGYDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRAN 523 (568)
Q Consensus 444 ~~~~~~~g~~ve~~l~N~~~~~~~~HP~HlHG~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~ad 523 (568)
+.+.++.|..|.+.+... +..|.|.+-..-. ..|. -||-...+.+.++
T Consensus 73 n~LvLP~g~~Vr~~lTS~----DVIHSF~VP~lgv-------------------------K~Da---vPGr~n~l~~~~~ 120 (162)
T PTZ00047 73 KRLTLPTRTHIRFLITAT----DVIHSWSVPSLGI-------------------------KADA---IPGRLHKINTFIL 120 (162)
T ss_pred CCEEEeCCCEEEEEEEeC----ccceeeeccccCc-------------------------eeec---cCCceEEEEEecC
Confidence 556789999999988753 3667765543211 1232 3666777889999
Q ss_pred CceeEEEEeeccccccc-ccEEEEEEe
Q 008366 524 NPGVWFMHCHFDVHLPW-GLATTFIVE 549 (568)
Q Consensus 524 npG~w~~HCHil~H~d~-GM~~~~~V~ 549 (568)
.+|.+...|.-+--... .|-..++|.
T Consensus 121 ~~G~y~gqCsElCG~gHs~M~~~V~vv 147 (162)
T PTZ00047 121 REGVFYGQCSEMCGTLHGFMPIVVEAV 147 (162)
T ss_pred CCeEEEEEcchhcCcCccCceEEEEEe
Confidence 99999999987764333 355555544
No 128
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=29.38 E-value=2.3e+02 Score=27.21 Aligned_cols=18 Identities=17% Similarity=0.470 Sum_probs=14.3
Q ss_pred CeEEEecCCEEEEEEEeC
Q 008366 56 PTIRVQEGDTLIVHVSNE 73 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~ 73 (568)
|..|+++|+.-.||+...
T Consensus 77 Pl~rl~p~~~q~lRI~~~ 94 (227)
T PRK15299 77 PLFRLNGGQKNVLRIIRT 94 (227)
T ss_pred CeEEECCCCccEEEEEEC
Confidence 788888888888887754
No 129
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=29.37 E-value=3.4e+02 Score=22.76 Aligned_cols=21 Identities=5% Similarity=0.297 Sum_probs=12.0
Q ss_pred EEEeEEEECCCceEEEEEEeC
Q 008366 254 YVTDVVVIAPGQTTDVLLKAD 274 (568)
Q Consensus 254 ~~~d~~~l~pg~r~dv~~~~~ 274 (568)
.....+.|.+|..|.+.+.-.
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~ 82 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGT 82 (122)
T ss_pred EEeccEEEcCCCEEEEEEECC
Confidence 344556666666666666544
No 130
>COG1470 Predicted membrane protein [Function unknown]
Probab=29.24 E-value=7.5e+02 Score=26.62 Aligned_cols=176 Identities=18% Similarity=0.300 Sum_probs=97.1
Q ss_pred EEEecCCE--EEEEEEeCCC--CCeeEEEccccc-cCCCCCCCCCCcccccCCCCCeEEEEEEeC----CCCCceeEecC
Q 008366 58 IRVQEGDT--LIVHVSNESP--YNITIHWHGIFQ-IRSIWADGPNMITQCPIRPGNSYTYKFRII----NQEGTLWWHAH 128 (568)
Q Consensus 58 i~v~~Gd~--v~i~l~N~l~--~~~~iH~HG~~~-~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~----~~~Gt~~YH~h 128 (568)
+.+.++++ +.|++.|... +...+-.-|+.- ....+-+|.-.++...+.|||+.+....+- -.+|+
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~~gE~kdvtleV~ps~na~pG~------ 351 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLKPGEEKDVTLEVYPSLNATPGT------ 351 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEecCCCceEEEEEEecCCCCCCCc------
Confidence 45556665 6678888864 344555555431 111123565667778899999999888772 12333
Q ss_pred hhhhhhcceEEEEEecCCCCCCCCCCCCCceeEEEeecccCcHHHHHhhccccCCCCCCCceEEEcCCCCCCCCCCCCce
Q 008366 129 ISMLRATVHGAFIIRPKSGHKYPFPKPDKEVPIVLGEWWNDDIMDVANRGEITGVGPRISDAFTINGMPGDLYPCSENQT 208 (568)
Q Consensus 129 ~~~~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~~~d~~~~~~~~~~~~~~~~g~~~~~~~~~~iNG~~g~~~~~~~~~~ 208 (568)
|-..|+-.... ...++.++-+.- .|.. ....-+-||.
T Consensus 352 --------Ynv~I~A~s~s------~v~~e~~lki~~---------------~g~~--~~~v~l~~g~------------ 388 (513)
T COG1470 352 --------YNVTITASSSS------GVTRELPLKIKN---------------TGSY--NELVKLDNGP------------ 388 (513)
T ss_pred --------eeEEEEEeccc------cceeeeeEEEEe---------------cccc--ceeEEccCCc------------
Confidence 34444433221 122343333310 1110 0112223444
Q ss_pred eEEEEEcCc--EEEEEEEeccCCC--eEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCce--EEEEEEeCC--CCcee
Q 008366 209 YKLKVEKGK--TYLLRIINAALNN--QLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQT--TDVLLKADQ--PVGSY 280 (568)
Q Consensus 209 ~~l~v~~G~--~~rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r--~dv~~~~~~--~~g~y 280 (568)
..+++++|+ ..++++-|.|+.. ...+.+.+-+=|-+..|+..+ + .|.||+| +++.++++. .+|+|
T Consensus 389 ~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aGdY 461 (513)
T COG1470 389 YRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAGDY 461 (513)
T ss_pred EEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCCcE
Confidence 467788875 5689999999554 345666654445556665422 2 3566766 455555553 46899
Q ss_pred EEEEeeccC
Q 008366 281 YMAARAYAA 289 (568)
Q Consensus 281 ~~~~~~~~~ 289 (568)
.+......+
T Consensus 462 ~i~i~~ksD 470 (513)
T COG1470 462 RITITAKSD 470 (513)
T ss_pred EEEEEEeec
Confidence 998877665
No 131
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=28.63 E-value=2.6e+02 Score=26.99 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=11.4
Q ss_pred EEECCCceEEEEEEe
Q 008366 259 VVIAPGQTTDVLLKA 273 (568)
Q Consensus 259 ~~l~pg~r~dv~~~~ 273 (568)
..|.|++...+.+..
T Consensus 187 ~~v~P~s~~~~~l~~ 201 (230)
T PRK09918 187 PYILPGESLTVAITN 201 (230)
T ss_pred ceECCCceEEEEccC
Confidence 468888888887763
No 132
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=28.00 E-value=1.2e+02 Score=32.55 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhccccCCceEEEEEEEEEEeeccCceeeeEEEECCCCCCCeEEEecCCEEE-----EEEEeC
Q 008366 6 LLLACALVVLASSTFASAAVVEHSFQVKNLTIGRLCRQQTITAVNGSLPGPTIRVQEGDTLI-----VHVSNE 73 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~NG~~pGP~i~v~~Gd~v~-----i~l~N~ 73 (568)
.+++++++++.||+++. --......+.+.+.+....+-..-|.+- -.|.|++||.|+ ++|.+.
T Consensus 26 ~~~~~~~~~~~WA~~~~----~~~~v~a~G~v~p~~~~~~vq~~~~G~v-~~i~V~eG~~V~~G~~L~~ld~~ 93 (457)
T TIGR01000 26 PIFLLLVFLVLFSLFAK----KEIVIRTTGTIEPAKILSKIQSTSNNAI-KENYLKENKFVKKGDLLVVYDNG 93 (457)
T ss_pred HHHHHHHHHHHHHHhEe----eeEEEEEeEEEEecCceEEEEcCCCcEE-EEEEcCCCCEecCCCEEEEECch
Confidence 33444444556777521 2223334455555554433333333111 356677777654 666555
No 133
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=27.95 E-value=43 Score=21.89 Aligned_cols=15 Identities=53% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhcc
Q 008366 5 MLLLACALVVLASST 19 (568)
Q Consensus 5 ~~~~~~~~~~~~~~~ 19 (568)
-.++++++++++|+-
T Consensus 20 GLllifvl~vLFssy 34 (37)
T PF02419_consen 20 GLLLIFVLAVLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 567888888888864
No 134
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.87 E-value=1.5e+02 Score=28.56 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=41.6
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++..... .|+|.+..-. .+.|.+ ||..-.+.++++ .+|.|...|..+-
T Consensus 140 n~l~lP~~~~v~~~~tS~DV--iHsf~vP~lg-------------~k~dai---PG~~n~~~~~~~-~~G~~~g~CsE~C 200 (225)
T MTH00168 140 NRLVLPMDSKIRVLVTSADV--LHSWTLPSLG-------------LKMDAV---PGRLNQLAFLSS-RPGSFYGQCSEIC 200 (225)
T ss_pred ceEEEecCCEEEEEEEeCCh--hhcccccccc-------------ccccCC---CCeEEEEEEEcC-CCEEEEEEccccc
Confidence 46889999999999865542 2233333221 223433 888888889888 7899999998643
No 135
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=27.42 E-value=3.9e+02 Score=22.79 Aligned_cols=60 Identities=15% Similarity=0.135 Sum_probs=35.4
Q ss_pred EEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCC-CcEEEeEEEECCCceEEEEEEeCC
Q 008366 211 LKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYT-DPYVTDVVVIAPGQTTDVLLKADQ 275 (568)
Q Consensus 211 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~~~l~pg~r~dv~~~~~~ 275 (568)
|++.....|+|.+...+ ...+.|+|.. |++..+..- .......+.|..|+++.|.|+..+
T Consensus 52 i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 52 LKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 44444456888884333 4567788753 344433322 223345678888888888887663
No 136
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=27.40 E-value=1.5e+02 Score=25.06 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=26.2
Q ss_pred EEEEEEEeccCCCe-EEEEEcCc-eeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeC
Q 008366 218 TYLLRIINAALNNQ-LFFKIANH-KFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKAD 274 (568)
Q Consensus 218 ~~rlRliN~~~~~~-~~~~i~gh-~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~ 274 (568)
.|+++|+|-+.... +.+.+.|. .+++. .....+.|.+|+..++-|...
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~---------~~~~~i~v~~g~~~~~~v~v~ 83 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ---------GPENTITVPPGETREVPVFVT 83 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE----------ES--EEEE-TT-EEEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE---------CCCcceEECCCCEEEEEEEEE
Confidence 48999999997664 56666653 23331 123688899998876665544
No 137
>PRK13201 ureB urease subunit beta; Reviewed
Probab=27.37 E-value=1.6e+02 Score=25.63 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=43.6
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCcee
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTLW 124 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~ 124 (568)
.|.+++| +++.|+++|...+|+ .-|+|=.+....--.| | .|.-|.....||++.+.+.. .-.|.--
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV--~igG~r~ 89 (136)
T PRK13201 12 EVEINNHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLV--EYAGKRK 89 (136)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEE--EccCceE
Confidence 4778888 689999999998875 4677766654321112 1 22334456788998888875 4555543
Q ss_pred E
Q 008366 125 W 125 (568)
Q Consensus 125 Y 125 (568)
-
T Consensus 90 V 90 (136)
T PRK13201 90 I 90 (136)
T ss_pred E
Confidence 3
No 138
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.31 E-value=2e+02 Score=27.79 Aligned_cols=62 Identities=13% Similarity=0.170 Sum_probs=41.9
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++.-.. -.|+|.+..... +.|.+ ||..-.+.++++ .+|.|...|..+-
T Consensus 140 n~lvlP~~~~v~~~~tS~D--ViHsf~iP~lg~-------------k~dai---PG~~~~~~~~~~-~~G~~~g~Cse~C 200 (229)
T MTH00038 140 NRLVLPYQTPIRVLVSSAD--VLHSWAVPSLGV-------------KMDAV---PGRLNQTTFFIS-RTGLFYGQCSEIC 200 (229)
T ss_pred ceEEEecCeEEEEEEEECC--ccccccccccCc-------------eeecC---CCceEEEEEEcC-CCEEEEEEccccc
Confidence 4688999999998885443 233344433222 23333 788888888888 7899999998644
Q ss_pred C
Q 008366 289 A 289 (568)
Q Consensus 289 ~ 289 (568)
.
T Consensus 201 G 201 (229)
T MTH00038 201 G 201 (229)
T ss_pred C
Confidence 3
No 139
>PRK13198 ureB urease subunit beta; Reviewed
Probab=27.04 E-value=1.5e+02 Score=26.45 Aligned_cols=65 Identities=23% Similarity=0.214 Sum_probs=42.5
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|.+++| +++.|+++|..++++ .-|+|=.+....---| | .|.-|.....||++.+.... .-.|.-
T Consensus 40 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV--~~gG~r 116 (158)
T PRK13198 40 PITFNENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLI--PFGGKQ 116 (158)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEE--EccCce
Confidence 4888888 789999999998875 4577766654321112 1 22234456788888888875 345543
No 140
>PRK13204 ureB urease subunit beta; Reviewed
Probab=26.86 E-value=1.5e+02 Score=26.45 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=42.6
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCce
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTL 123 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~ 123 (568)
.|.+++| +++.|+|+|..++++ .-|+|=.+....--.| | .|.-+.....||++.+.+.. .-.|.-
T Consensus 35 ~I~lN~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV--~~gG~r 111 (159)
T PRK13204 35 PIEINQGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLV--PFAGKR 111 (159)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEE--EccCce
Confidence 4888888 689999999998875 4577766654322112 1 22234456788888888875 445544
No 141
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.70 E-value=2.1e+02 Score=27.74 Aligned_cols=61 Identities=10% Similarity=0.164 Sum_probs=41.6
Q ss_pred eEEEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEeecc
Q 008366 209 YKLKVEKGKTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARAYA 288 (568)
Q Consensus 209 ~~l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~~~ 288 (568)
..+.+..|+.+|+++.-... - |.|.+=+. ..+.|.+ ||..-.+.++++ .||.|...|...-
T Consensus 143 n~l~lP~~~~v~~~itS~DV--i-------HSf~vP~l------g~K~Dav---PGr~n~~~~~~~-~~G~y~g~CsE~C 203 (231)
T MTH00080 143 NRCVLPCDTNIRFCITSSDV--I-------HSWALPSL------SIKMDAM---SGILSTLCYSFP-MPGVFYGQCSEIC 203 (231)
T ss_pred CceEeecCcEEEEEEEeCcc--c-------cccccccc------Cceeecc---CCceEEEEEEEc-CceEEEEEehhhc
Confidence 46789999999999855542 2 34444111 1233444 788888888888 7999999998643
No 142
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=26.01 E-value=2.9e+02 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.1
Q ss_pred CeEEEecCCEEEEEEEeC
Q 008366 56 PTIRVQEGDTLIVHVSNE 73 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~ 73 (568)
|.+|+++|+.-.||+...
T Consensus 85 Plfrl~p~~~q~lRIi~~ 102 (236)
T PRK11385 85 PLILLKPGTTGTLRLLRT 102 (236)
T ss_pred CeEEECCCCceEEEEEEC
Confidence 788899888877777654
No 143
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=25.97 E-value=1.7e+02 Score=21.84 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=18.8
Q ss_pred EEEEcCcEEEEEEEeccCCCeEEEEEcCceeEEE
Q 008366 211 LKVEKGKTYLLRIINAALNNQLFFKIANHKFTVV 244 (568)
Q Consensus 211 l~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 244 (568)
+++.+|+..+||..... .+...+-..++.
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT 30 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLT 30 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEE
Confidence 56778888888864433 256665566664
No 144
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=25.78 E-value=3.4e+02 Score=21.53 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=34.8
Q ss_pred cEEEEEEEeccCCCeEEEEEcCceeEEEEecCCCCCcEEEeEEEECCCceEEEEEEeCCCCceeEEEEee
Q 008366 217 KTYLLRIINAALNNQLFFKIANHKFTVVAVDAGYTDPYVTDVVVIAPGQTTDVLLKADQPVGSYYMAARA 286 (568)
Q Consensus 217 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~~~l~pg~r~dv~~~~~~~~g~y~~~~~~ 286 (568)
..++|.|.|.|..... |.+.. ... ......++.|.+|++.++.+......|-|-+..+.
T Consensus 20 g~l~l~l~N~g~~~~~-~~v~~-------~~y---~~~~~~~~~v~ag~~~~~~w~l~~s~gwYDl~v~~ 78 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVT-FTVYD-------NAY---GGGGPWTYTVAAGQTVSLTWPLAASGGWYDLTVTG 78 (89)
T ss_pred CEEEEEEEeCCCCcEE-EEEEe-------CCc---CCCCCEEEEECCCCEEEEEEeecCCCCcEEEEEEc
Confidence 3789999999754432 44432 111 11122567788888888888775344556555553
No 145
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.44 E-value=58 Score=25.82 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=24.4
Q ss_pred eeeEEEECCCCCCCeEEEecCCEEEEE
Q 008366 43 QQTITAVNGSLPGPTIRVQEGDTLIVH 69 (568)
Q Consensus 43 ~~~~~~~NG~~pGP~i~v~~Gd~v~i~ 69 (568)
+...+.+||+.-++--+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 578999999999999999999998874
No 146
>PRK13205 ureB urease subunit beta; Reviewed
Probab=24.26 E-value=1.9e+02 Score=25.75 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=43.1
Q ss_pred eEEEecC-CEEEEEEEeCCCCCe--eEEEccccccCCCCCC-----C----CCCcccccCCCCCeEEEEEEeCCCCCcee
Q 008366 57 TIRVQEG-DTLIVHVSNESPYNI--TIHWHGIFQIRSIWAD-----G----PNMITQCPIRPGNSYTYKFRIINQEGTLW 124 (568)
Q Consensus 57 ~i~v~~G-d~v~i~l~N~l~~~~--~iH~HG~~~~~~~~~D-----G----~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~ 124 (568)
.|.+++| +++.|+++|...+|+ .-|+|=.+....--.| | .|.-+.....||++.+.... .-.|.--
T Consensus 12 ~IelN~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV--~igG~R~ 89 (162)
T PRK13205 12 SLTGNVGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLV--AIGGDRI 89 (162)
T ss_pred CeEeCCCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEE--EccCceE
Confidence 4788888 689999999998875 4577766654321112 1 22334456788998888875 4555543
No 147
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.23 E-value=87 Score=27.84 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=22.4
Q ss_pred EeCCCcEEEEEEE-ecCc---eeEEEEeeccc
Q 008366 509 AVPIGGWAVIRFR-ANNP---GVWFMHCHFDV 536 (568)
Q Consensus 509 ~vp~~g~~~irf~-adnp---G~w~~HCHil~ 536 (568)
.|+||..++|.++ ..|| |.|.|+|-...
T Consensus 98 PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~p 129 (146)
T PF10989_consen 98 PVPPGTTVTVVLSPVRNPRSGGTYQFNVTAFP 129 (146)
T ss_pred CCCCCCEEEEEEEeeeCCCCCCeEEEEEEEEC
Confidence 4789999999995 4575 99999996554
No 148
>PF14481 Fimbrial_PilY2: Type 4 fimbrial biogenesis protein PilY2; PDB: 3TDQ_A.
Probab=24.07 E-value=8.4 Score=31.70 Aligned_cols=75 Identities=23% Similarity=0.198 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhccccCCceEEEEEEEEEE-----eeccCceeeeE---EEECCCCCCCeE-EEecCCEEEEE--EEeCCC
Q 008366 7 LLACALVVLASSTFASAAVVEHSFQVKNL-----TIGRLCRQQTI---TAVNGSLPGPTI-RVQEGDTLIVH--VSNESP 75 (568)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~G~~~~~---~~~NG~~pGP~i-~v~~Gd~v~i~--l~N~l~ 75 (568)
|++++|+|.--+|+++..+.+-.=.+.+. .+.+||+.+.. ..=| =||.| .+++|..|-.. +.-.++
T Consensus 11 L~alaLa~p~~~~a~~~~TFE~~GvV~~v~~e~~lv~IDgq~YrLPn~v~q~---~~p~ifqvrpGsvVS~sGsvss~~p 87 (118)
T PF14481_consen 11 LFALALACPGLAWAAEPHTFEGAGVVQEVQPEKNLVDIDGQHYRLPNRVAQQ---GGPVIFQVRPGSVVSFSGSVSSPLP 87 (118)
T ss_dssp ----------------TTEEEEEEEEEEEEGGGTEEEETTEEEE--TT-EET---TEEGGGT--TT-EEEEEEE--SSS-
T ss_pred hhhhhhccccceeccCcceecccceEEEeecccceEEEcCcEEeCCchhhhc---CCceEEEEcCCcEEEEeeeecCCCc
Confidence 34444444433444345544433333333 34445544332 1222 26887 89999987653 222234
Q ss_pred CCeeEEEcc
Q 008366 76 YNITIHWHG 84 (568)
Q Consensus 76 ~~~~iH~HG 84 (568)
.-.+|.+|-
T Consensus 88 ~I~si~i~r 96 (118)
T PF14481_consen 88 TITSIYILR 96 (118)
T ss_dssp EEEEEEE-H
T ss_pred ccceEEEEe
Confidence 445565553
No 149
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=23.93 E-value=2e+02 Score=23.90 Aligned_cols=14 Identities=29% Similarity=0.102 Sum_probs=8.2
Q ss_pred CceeeeEEEECCCC
Q 008366 40 LCRQQTITAVNGSL 53 (568)
Q Consensus 40 ~G~~~~~~~~NG~~ 53 (568)
+|...+=+-+||+.
T Consensus 47 ~~~~ieEyRv~G~l 60 (105)
T PF11191_consen 47 GGSTIEEYRVNGQL 60 (105)
T ss_pred CCcEEEEEEECCeE
Confidence 35555666666665
No 150
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.23 E-value=94 Score=27.07 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHhhccccCCceEEEEEEE
Q 008366 2 ARSMLLLACALVVLASSTFASAAVVEHSFQV 32 (568)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (568)
.|.+.|+++++.|.+..+++..++-..|++|
T Consensus 6 ~~~l~Ll~aa~sL~~~~aaaaeatgkLTvti 36 (151)
T COG4704 6 RRRLFLLAAALSLVSLKAAAAEATGKLTVTI 36 (151)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhcCceEEEE
Confidence 4557777777666644443344444444443
No 151
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=23.16 E-value=1.1e+02 Score=27.89 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=30.8
Q ss_pred eEEEecCCEEEEEEEeCCCC-CeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEE
Q 008366 57 TIRVQEGDTLIVHVSNESPY-NITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFR 115 (568)
Q Consensus 57 ~i~v~~Gd~v~i~l~N~l~~-~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~ 115 (568)
.|.|.+|++|+|.+=....+ +-.+-. + |.|. .+..+....||+++.|...
T Consensus 70 ~l~V~~~~~vqlsVP~~Ia~~pW~ll~--i------Y~dp-~~~~~~~~~~~~~~avti~ 120 (161)
T PF10969_consen 70 ELPVPPGEPVQLSVPEEIADAPWRLLA--I------YDDP-AGNDEDEFRPGERTAVTIP 120 (161)
T ss_pred EEEcCCCCeEEEeCCHHHccCCcEEEE--E------EECC-CCceeeEecCCCceEEEEe
Confidence 79999999999998666432 433311 1 1122 1222334778888888776
No 152
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=22.64 E-value=76 Score=20.90 Aligned_cols=16 Identities=50% Similarity=0.478 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhccc
Q 008366 5 MLLLACALVVLASSTF 20 (568)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (568)
-+++++++++++|+-+
T Consensus 22 GlLlifvl~vLFssYf 37 (39)
T PRK00753 22 GLLLVFVLGILFSSYF 37 (39)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4678889999988754
No 153
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=22.09 E-value=1.5e+02 Score=25.87 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=16.8
Q ss_pred CCCCCeE----EEEEEeCCCCCceeEe
Q 008366 104 IRPGNSY----TYKFRIINQEGTLWWH 126 (568)
Q Consensus 104 i~PG~~~----~y~f~~~~~~Gt~~YH 126 (568)
+..|++. .|+|.. ...+.+|-|
T Consensus 86 l~~GD~V~f~GeYe~n~-kggvIHWTH 111 (131)
T PF11948_consen 86 LQKGDQVEFYGEYEWNP-KGGVIHWTH 111 (131)
T ss_pred cCCCCEEEEEEEEEECC-CCCEEEeec
Confidence 6677765 688875 777888888
No 154
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=21.37 E-value=4.7e+02 Score=29.83 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=41.8
Q ss_pred CCCeEEEec---CCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEec
Q 008366 54 PGPTIRVQE---GDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHA 127 (568)
Q Consensus 54 pGP~i~v~~---Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~ 127 (568)
+.|.++++. ...|+|+|.|.......+|..-.... ++.+ .+..|.+|.+.+..|.+ ...+ -||--
T Consensus 592 ~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y~-----~~~p--r~ytV~aG~~~~~~w~l-~~s~-GWYDL 659 (690)
T TIGR03396 592 AVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAYG-----GAGP--RTVTVAPGQRVELHWDL-SASG-GWYDF 659 (690)
T ss_pred CCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCCC-----CCCC--EEEEECCCCEEEEEEec-cCCC-CceEE
Confidence 446666644 44699999999988888887532111 1112 12468999999988876 3333 56653
No 155
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=20.95 E-value=1.8e+02 Score=30.83 Aligned_cols=62 Identities=10% Similarity=0.035 Sum_probs=46.0
Q ss_pred eEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCCCcccccCCCCCeEEEEEEeCCCCCceeEecCh
Q 008366 57 TIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPNMITQCPIRPGNSYTYKFRIINQEGTLWWHAHI 129 (568)
Q Consensus 57 ~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~~~~~~~i~PG~~~~y~f~~~~~~Gt~~YH~h~ 129 (568)
+-.++.++.+++.|+|. ...+.-.||+... .|+.-+ .+.|.-....+|.+ +++|.+||.|--
T Consensus 549 ~staps~~l~ef~Vkq~--DEVt~l~tnld~V----ed~thg----fv~p~~~v~~~v~p-q~tasvtf~a~k 610 (637)
T COG4263 549 TSTAPSFGLTEFKVKQG--DEVTVLTTNLDEV----EDLTHG----FVIPNYGVNMEVKP-QRTASVTFYADK 610 (637)
T ss_pred eeccCCCceEEEEEecC--cEEEEEeccccee----ccccce----eeeccCceEEEEcc-CCceEEEEEccC
Confidence 45577899999999887 3455566788643 165543 57888888999986 999999998753
No 156
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=20.89 E-value=4.3e+02 Score=25.50 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=20.9
Q ss_pred eeeeEEEECCC-----C----CCCeEEEecCCEEEEEEEeC
Q 008366 42 RQQTITAVNGS-----L----PGPTIRVQEGDTLIVHVSNE 73 (568)
Q Consensus 42 ~~~~~~~~NG~-----~----pGP~i~v~~Gd~v~i~l~N~ 73 (568)
.-.+.|..++. . --|..|+++|+.-.||+.-.
T Consensus 52 ~LvQswv~~~~~~~~~~pFivtPPlfrl~p~~~q~lRI~~~ 92 (229)
T PRK15211 52 YGGQVWIDNTTQGSSTVYMVPAPPFFKVRPKEKQIIRIMKT 92 (229)
T ss_pred EEEEEEEecCCCCCccCCEEEcCCeEEECCCCceEEEEEEC
Confidence 44566766553 1 12788899988877776644
No 157
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=20.76 E-value=1.6e+02 Score=19.71 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=15.7
Q ss_pred eeEEEEEcCcEEEEEEEecc
Q 008366 208 TYKLKVEKGKTYLLRIINAA 227 (568)
Q Consensus 208 ~~~l~v~~G~~~rlRliN~~ 227 (568)
....-...|+.||||+..++
T Consensus 13 ~ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 13 REVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp SEEEEEETTEEEEEEEETTT
T ss_pred CEEEEEeCCeEEEeeEccCC
Confidence 35667788999999997665
No 158
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=20.65 E-value=3.7e+02 Score=25.89 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.9
Q ss_pred CeEEEecCCEEEEEEEeC
Q 008366 56 PTIRVQEGDTLIVHVSNE 73 (568)
Q Consensus 56 P~i~v~~Gd~v~i~l~N~ 73 (568)
|++|+++|+.-.||+...
T Consensus 75 PlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 75 PVIRVAANSGQQLKIKKL 92 (226)
T ss_pred CeEEECCCCceEEEEEEC
Confidence 899999998888887754
No 159
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=20.62 E-value=54 Score=23.97 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=18.7
Q ss_pred EEEECCCCC-CCeEEEecCCEEEE
Q 008366 46 ITAVNGSLP-GPTIRVQEGDTLIV 68 (568)
Q Consensus 46 ~~~~NG~~p-GP~i~v~~Gd~v~i 68 (568)
-+.+||+.- -|..++++||.|.|
T Consensus 35 ~V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 35 EVLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred CEEECCEEccCCCCCCCCCCEEEe
Confidence 456799874 68899999999876
No 160
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=20.06 E-value=2.6e+02 Score=25.02 Aligned_cols=66 Identities=15% Similarity=0.287 Sum_probs=37.1
Q ss_pred EEEEEEEEEeeccCceeeeEEEECCCC-CCCeEEEecCCEEEEEEEeCCCCCeeEEEccccccCCCCCCCCC
Q 008366 27 EHSFQVKNLTIGRLCRQQTITAVNGSL-PGPTIRVQEGDTLIVHVSNESPYNITIHWHGIFQIRSIWADGPN 97 (568)
Q Consensus 27 ~~~~~~~~~~~~~~G~~~~~~~~NG~~-pGP~i~v~~Gd~v~i~l~N~l~~~~~iH~HG~~~~~~~~~DG~~ 97 (568)
.|-++.++...... .....+-+.|.+ +|..-+. .|..++.+|+.. .....++..|.- +..+.+|..
T Consensus 35 ~yf~tpse~~~~~~-~~g~~vrvgG~V~~gSi~~~-~~~~~~F~ltD~-~~~i~V~Y~G~l--Pd~F~eg~~ 101 (148)
T PRK13254 35 VFFYTPSEVAEGEA-PAGRRFRLGGLVEKGSVQRG-DGLTVRFVVTDG-NATVPVVYTGIL--PDLFREGQG 101 (148)
T ss_pred ceeeCHHHHhcCCc-cCCCeEEEeEEEecCcEEeC-CCCEEEEEEEeC-CeEEEEEECCCC--CccccCCCE
Confidence 35555554433322 233444555655 4444343 777888888776 566778888873 333446543
No 161
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=20.05 E-value=4.4e+02 Score=20.75 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=45.5
Q ss_pred EcccCCEEEEEEEeCCcCCCCCCceeecC--CcEEEEEeCCCCCCCCCCCCCCcCCCCCceeeEEeCCCcEEEEEEEecC
Q 008366 447 MLKFNSTVEMVLQNTALIAVESHPMHLHG--YDFYVLAQGFGNYNASRDSKNFNLVNPQRRNTIAVPIGGWAVIRFRANN 524 (568)
Q Consensus 447 ~~~~g~~ve~~l~N~~~~~~~~HP~HlHG--~~F~Vv~~~~g~~~~~~~~~~~~~~~p~~rDTv~vp~~g~~~irf~adn 524 (568)
.++.|+.++|.|.-+.. ..--|++.. ....+++...-..+. ..+ .+..+|.-++.|++..
T Consensus 2 ~v~~g~~~~I~L~~nps---tGY~W~~~~~~~~l~l~~~~~~~~~~---------~~~------~vG~~g~~~f~f~a~~ 63 (92)
T PF09394_consen 2 TVKVGDTFEIELPENPS---TGYSWSLSSDSDGLQLVSEEYIPDNS---------PSG------LVGAPGTRTFTFKALK 63 (92)
T ss_dssp EEETTSEEEEEEEEBCC---GTBEEEECTSTTTEEEEEEEEEESST---------SST------SSTSSEEEEEEEEESS
T ss_pred eecCCCEEEEEECCCCC---CCeEEEEecCCCeEEEcCCcEEeCCC---------CcC------CCCCCcEEEEEEEEec
Confidence 57889999999986432 444555555 334444432110000 000 5566789999999999
Q ss_pred ceeEEEEeecccccc
Q 008366 525 PGVWFMHCHFDVHLP 539 (568)
Q Consensus 525 pG~w~~HCHil~H~d 539 (568)
+|...++.--.-..+
T Consensus 64 ~G~~~i~~~y~r~we 78 (92)
T PF09394_consen 64 PGTTTIKFEYRRPWE 78 (92)
T ss_dssp SEEEEEEEEEEBTTT
T ss_pred CeeEEEEEEEECcCC
Confidence 999888775544433
Done!