Query 008367
Match_columns 568
No_of_seqs 204 out of 2575
Neff 9.2
Searched_HMMs 29240
Date Tue Mar 26 00:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 3.8E-31 1.3E-35 283.2 25.3 445 25-561 9-478 (491)
2 2xut_A Proton/peptide symporte 100.0 3.4E-31 1.2E-35 286.1 24.4 472 26-562 9-510 (524)
3 1pw4_A Glycerol-3-phosphate tr 100.0 5.7E-28 2E-32 255.1 19.2 402 28-557 27-436 (451)
4 4gc0_A D-xylose-proton symport 100.0 4.4E-28 1.5E-32 259.3 14.9 407 64-566 54-474 (491)
5 3o7q_A L-fucose-proton symport 99.9 1.9E-25 6.5E-30 234.9 27.3 356 26-515 23-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 8.6E-24 3E-28 217.9 13.5 167 32-225 3-169 (375)
7 2cfq_A Lactose permease; trans 99.9 1E-23 3.6E-28 221.0 4.7 396 28-562 6-407 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.4 5E-13 1.7E-17 140.4 12.6 179 28-229 251-432 (451)
9 3o7q_A L-fucose-proton symport 99.4 1.1E-12 3.8E-17 137.2 13.7 169 28-225 257-427 (438)
10 2cfq_A Lactose permease; trans 99.3 1.7E-12 5.7E-17 135.5 9.7 177 30-232 221-401 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 5.4E-11 1.8E-15 126.5 11.8 185 31-233 285-474 (491)
12 4gc0_A D-xylose-proton symport 99.1 5.5E-10 1.9E-14 118.6 11.7 181 32-234 279-466 (491)
13 2gfp_A EMRD, multidrug resista 98.9 1.2E-10 4.2E-15 119.1 0.0 164 29-217 199-363 (375)
14 2xut_A Proton/peptide symporte 98.1 4.1E-06 1.4E-10 89.4 9.1 113 407-554 83-198 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=3.8e-31 Score=283.23 Aligned_cols=445 Identities=20% Similarity=0.284 Sum_probs=290.4
Q ss_pred CCCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHH-----hCCChhhhhhhHHHHHHHHHhhhhhHHHHhhh-ccCchHH
Q 008367 25 TGNWKACRFILGNECCERLAYYGMSTNLVNYLQKQ-----LNQGNVTASNNVTNWSGTCYITPLIGAFLADS-YMGRFWT 98 (568)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~-----lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr-~~Grk~~ 98 (568)
++++|.++.+++..++.++.+|++..+++.|++++ +|++..+.+++.+.+.++..++.+++|+++|| + |||++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~~ 87 (491)
T 4aps_A 9 FGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARPA 87 (491)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHHH
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchHH
Confidence 34567788999999999999999999999999998 99999999999999999999999999999999 8 99999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008367 99 IASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK 178 (568)
Q Consensus 99 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (568)
+..+.++.+++.++++++ ++.+.++++|+++|++.|...++..++++|++|+++++ |
T Consensus 88 ~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~----r 144 (491)
T 4aps_A 88 VFWGGVLIMLGHIVLALP-------------------FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR----R 144 (491)
T ss_dssp HHHHHHHHHHHHHHHHSC-------------------CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH----H
T ss_pred HHHHHHHHHHHHHHHHHh-------------------hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc----c
Confidence 999999999999988876 45778999999999999999999999999999987733 7
Q ss_pred hhhhhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeec---CCCC-ChhHHHHHHHHH-
Q 008367 179 SSFFNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQ---KPGG-SPLTRIMQVIVA- 253 (568)
Q Consensus 179 ~~~~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~- 253 (568)
++++++++.+.++|..++|.+++++.+..||++.|++.++..++++++.....++..++ +++. .+.++..+....
T Consensus 145 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (491)
T 4aps_A 145 DAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKV 224 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHC
T ss_pred eeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHH
Confidence 77888899999999999999999999999999999998776666655544332222111 1111 111111110000
Q ss_pred -------------HHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhh
Q 008367 254 -------------SFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQ 320 (568)
Q Consensus 254 -------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (568)
.......... ++...... .. ... ....... .+++.. ..
T Consensus 225 g~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~---------~~~~~~~---------------~~~~~~-~~ 275 (491)
T 4aps_A 225 SLAVAGFIAIIVVMNLVGWNSLP-AYINLLTI--VA-IAI---------PVFYFAW---------------MISSVK-VT 275 (491)
T ss_dssp CCCCHHHHHHHHHHHHHSSCCTT-HHHHHHHH--HH-HHH---------HHHHHHH---------------HC-------
T ss_pred HHHHHHHHHHHHHHHhccCcccc-cchhhhhH--HH-HHH---------HHHHHHH---------------Hhhccc-cc
Confidence 0000000000 00000000 00 000 0000000 000000 00
Q ss_pred HHHHHHHHHHHHHHHhhhHHHhhhccccceeEeeccc-ccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhh
Q 008367 321 VEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNT-MDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKL 399 (568)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~ 399 (568)
..++++......++.....++..+.+....+..+... .... ....+.+.....+..++..++.+++ .+|.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l----~~r~ 346 (491)
T 4aps_A 276 STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSS-----WFPVSWFQSLNPLFIMLYTPFFAWL----WTAW 346 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCS-----SSCSGGGTTHHHHHHHHHHHHHHHH----HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccC-----ccCHHHHhccchHHHHHHHHHHHHH----HHHH
Confidence 0122222233334444445555555544432221110 1111 0234455666667777777777664 4454
Q ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhc
Q 008367 400 TGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYD 479 (568)
Q Consensus 400 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~ 479 (568)
++|+ ....+.+..+.++++++++.+....... ......+.++.++..++.+++.+...|..++++.|
T Consensus 347 ~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 413 (491)
T 4aps_A 347 KKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALY-----------GTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK 413 (491)
T ss_dssp TTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC-----------CCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred hccC--CCchHHHHHHHHHHHHHHHHHHHHHHhc-----------CCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4432 4455677788888888877766544210 00112356677778889999999999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhce
Q 008367 480 QAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFT 559 (568)
Q Consensus 480 ~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~ 559 (568)
..|++.||+++|+.++...+|+.+++.+.+.+.+. ++...|+..+++++++.++.++..++.+
T Consensus 414 ~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 414 LAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876432 1234677888888888877777776655
Q ss_pred ec
Q 008367 560 YK 561 (568)
Q Consensus 560 ~~ 561 (568)
++
T Consensus 477 ~~ 478 (491)
T 4aps_A 477 GL 478 (491)
T ss_dssp --
T ss_pred HH
Confidence 44
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.98 E-value=3.4e-31 Score=286.09 Aligned_cols=472 Identities=27% Similarity=0.465 Sum_probs=290.5
Q ss_pred CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhC------CChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHH
Q 008367 26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLN------QGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTI 99 (568)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg------~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~ 99 (568)
+++|.++.+++..++.++++|++.++++.|+++++| ++..+.+++.+++.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345678889999999999999999999999999999 99999999999999999999999999999976999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCc-hhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhh
Q 008367 100 ASFSIIYCLGMTLLTLTASVSGLKPSCDKDACHPTGA-QTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKK 178 (568)
Q Consensus 100 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 178 (568)
.++.++.+++.++++++ . +.+.+++.|++.|++.+...++..++++|++|+++ |
T Consensus 89 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r 143 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIF-------------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------K 143 (524)
T ss_dssp HHHHHHHHHHHHHHHHT-------------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------T
T ss_pred HHHHHHHHHHHHHHHHh-------------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------h
Confidence 99999999999888877 3 57889999999999999999999999999999988 7
Q ss_pred hhh---hhhHHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHH
Q 008367 179 SSF---FNWFYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASF 255 (568)
Q Consensus 179 ~~~---~~~~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (568)
+++ +++++...++|..++|.+++++.+..||++.|++.++..+++.+..+..+++.+++++++++..+..+.+....
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSAL 223 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHH
Confidence 654 45599999999999999999999889999999988877666665555444433322232222222212211222
Q ss_pred hhcccccCCcchhhhhhhhhhhhhccCccccC-----------------Cccchh--hhhhhhhccccccCCCCCCCccc
Q 008367 256 RKSNVVVPADKSLLYETADEECNIQGSRKLES-----------------TSKFKF--FDKAAVETQTDRVKGSADPWRLC 316 (568)
Q Consensus 256 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 316 (568)
+++.... +......+................ ..+.+| .+..+ .. .
T Consensus 224 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~ 287 (524)
T 2xut_A 224 LTKVEGK-GNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERAR------------KS---H 287 (524)
T ss_dssp ---CTTH-HHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSC------------CS---C
T ss_pred hhhhccc-CccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhh------------cc---c
Confidence 2111000 000000000000000000000000 000001 00000 00 0
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhh
Q 008367 317 TVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFA 396 (568)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 396 (568)
.....++.++......++.....++..+.+..+.+..+....+.. .+ .+.+.+...+.+..++..++.+++..+..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (524)
T 2xut_A 288 PDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---QW-FEPAMMQALNPLLVMLLIPFNNFVLYPAI 363 (524)
T ss_dssp CSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCC---SS-SCHHHHHTTSGGGHHHHGGGTTTC-----
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCC---ee-ecHHHHHHHHHHHHHHhHHHHHhhhHHHH
Confidence 000111223333334444444555555555555444332222111 11 24556667777788888888888765555
Q ss_pred hhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHh
Q 008367 397 RKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEF 476 (568)
Q Consensus 397 ~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~ 476 (568)
+|.+++ .++.+++.+|+++.+++++.+...... .+.....+.+++++.+++.+++++...+..+++
T Consensus 364 ~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 429 (524)
T 2xut_A 364 ERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLM-----------MDGGSALSIFWQILPYALLTFGEVLVSATGLEF 429 (524)
T ss_dssp ----------CCHHHHHTHHHHHHHHHHTTTTTTTT-----------TTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHH-----------hcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554433 455667778888888877765533210 000112356677778899999999999999999
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCC-CCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 008367 477 FYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPD-NLNRGHLDYFYWLLTILSVLNFLVYLWIA 555 (568)
Q Consensus 477 ~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~f~~~a~~~~v~~v~~~~~~ 555 (568)
+.|.+|++.||+++|++++..++|+.+|+.+.+.+.+... .+|.++ ..+ .....|++.+++++++.++++++.
T Consensus 430 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 503 (524)
T 2xut_A 430 AYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQIVQTGMS--VTAFQMFFFAGFAILAAIVFALYA 503 (524)
T ss_dssp HHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----cccccccccc--ccccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998764321 023110 001 112237788888888888777777
Q ss_pred hhceecc
Q 008367 556 KWFTYKK 562 (568)
Q Consensus 556 ~~~~~~~ 562 (568)
+++++++
T Consensus 504 ~~~~~~~ 510 (524)
T 2xut_A 504 RSYQMQD 510 (524)
T ss_dssp -------
T ss_pred HHhccch
Confidence 7665443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.95 E-value=5.7e-28 Score=255.12 Aligned_cols=402 Identities=10% Similarity=0.006 Sum_probs=254.7
Q ss_pred cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008367 28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 107 (568)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 107 (568)
++.++.+++..++.....+...+.++.+. +++ .+..+.|++.+++.++..++.++.|+++||+ |||+++.++.++.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 45566667777777777666666666554 567 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----hhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhh
Q 008367 108 LGMTLLTL----TASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFN 183 (568)
Q Consensus 108 i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (568)
++.+++++ + .+.+.++++|+++|++.+...++..++++|++|+++ |+++++
T Consensus 104 ~~~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~ 158 (451)
T 1pw4_A 104 AVMLFMGFVPWAT-------------------SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVS 158 (451)
T ss_dssp HHHHHHHHCHHHH-------------------SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHH
T ss_pred HHHHHHHhhhhcc-------------------ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHH
Confidence 99999988 6 457789999999999999999999999999999888 999999
Q ss_pred hHHHHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhccccc
Q 008367 184 WFYLSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVV 262 (568)
Q Consensus 184 ~~~~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (568)
+.+.+.++|..++|.+++++.+.+| ||+.|++.++..++..++.+...++.++.....+.
T Consensus 159 ~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 219 (451)
T 1pw4_A 159 VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------------- 219 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-------------------
Confidence 9999999999999999999888888 99999998876665554444333322111100000
Q ss_pred CCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHH-HHhhhHHH
Q 008367 263 PADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPV-WASGIVFA 341 (568)
Q Consensus 263 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 341 (568)
.+. +.+++++.+. + .. +..++++.........+.+...... ++....++
T Consensus 220 ~~~-----~~~~~~~~~~---~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 220 EEY-----KNDYPDDYNE---K--AE--------------------QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp TTT-----CCC--------------------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhh-----cccccccchh---h--hh--------------------cccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 000 0000000000 0 00 0000000000000001122111111 11111111
Q ss_pred hhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHH-
Q 008367 342 TVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISI- 420 (568)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~- 420 (568)
...... +.+.. ...+ ......+.+.....+..++..++.++ +.+|..+ ++++.+.++.++..
T Consensus 270 ~~~~~~-~~~~~------~~~g-~~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~-----~~~~~~~~~~~~~~~ 332 (451)
T 1pw4_A 270 GILDWS-PTYLK------EVKH-FALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFR-----GNRGATGVFFMTLVT 332 (451)
T ss_dssp HHHHHH-HHHBT------TBSC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTST-----TCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHH------HhcC-CCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhc-----CCchhHHHHHHHHHH
Confidence 221111 11111 1111 00011122333333444444445444 4455300 22334555554444
Q ss_pred HHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHH-
Q 008367 421 FSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAV- 499 (568)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~l- 499 (568)
++++.+.... ..+.+......++.+++.....+..+.++.|..|++.||++.|+.+....+
T Consensus 333 ~~~~~~~~~~------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 394 (451)
T 1pw4_A 333 IATIVYWMNP------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLG 394 (451)
T ss_dssp HHHHHTTSCC------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHH
Confidence 4444333111 014455666677788888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q 008367 500 GNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKW 557 (568)
Q Consensus 500 g~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~ 557 (568)
|..+++.+.+.+.+.. + +...|++.+++++++.+..++..++
T Consensus 395 g~~~~~~~~g~l~~~~------g----------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 395 GSVAASAIVGYTVDFF------G----------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp HHHHHHHHHHHHHHSS------C----------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc------C----------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999887643 2 2456788888888887766665543
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.95 E-value=4.4e-28 Score=259.31 Aligned_cols=407 Identities=12% Similarity=0.072 Sum_probs=234.8
Q ss_pred hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-CCC-CCCchhHHH
Q 008367 64 NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMTLLTLTASVSGLKPSCDKD-ACH-PTGAQTAVT 141 (568)
Q Consensus 64 ~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~ 141 (568)
..+.|++.+++.++..++.+++|+++||+ |||+++.++.+++.++.++++++...... +... ... .-..+.+.+
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~---~~~~~~~~~~~a~~~~~l 129 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTS---INPDNTVPVYLAGYVPEF 129 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSC---SSSSSSCCGGGGGCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhh---hcchhHHHHHHhhhHHHH
Confidence 35578899999999999999999999999 99999999999999999998854110000 0000 000 012578899
Q ss_pred HHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHHhHHHhhhhhhheecc--------ccchhhh
Q 008367 142 FVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINIGALVASSVLVWIQMN--------VGWGWGF 213 (568)
Q Consensus 142 ~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ig~~~~p~~~~~i~~~--------~g~~~~f 213 (568)
+++|+++|+|.|+..+..+.+++|..|+++ |++..++.+.+..+|..+++.++..+... .+|++.+
T Consensus 130 ~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4gc0_A 130 VIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMF 203 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHh
Confidence 999999999999999999999999999998 99999999999999999998877655432 3466666
Q ss_pred hHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchh
Q 008367 214 GIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKF 293 (568)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 293 (568)
.+..+..++.++..+ ..||+|+++..++++|+.++..++....+....
T Consensus 204 ~~~~~~~~~~~~~~~--------------------------------~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~ 251 (491)
T 4gc0_A 204 ASECIPALLFLMLLY--------------------------------TVPESPRWLMSRGKQEQAEGILRKIMGNTLATQ 251 (491)
T ss_dssp HTTHHHHHHHHHHGG--------------------------------GSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhh--------------------------------cCCCChHHHHHcCchhHHHHhHHHhcCCchhHH
Confidence 555544433333221 246677777666666655544333211110000
Q ss_pred --hhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHH-HhhhccccceeEeecccccCCCCCCcccCc
Q 008367 294 --FDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVF-ATVYSQMSTMFVLQGNTMDQHMGPNFKIPS 370 (568)
Q Consensus 294 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (568)
.+......... +.... ......++.........+.... ......+.+.+.. ..+ ......
T Consensus 252 ~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~ 314 (491)
T 4gc0_A 252 AVQEIKHSLDHGR----KTGGR-----LLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-------TLG-ASTDIA 314 (491)
T ss_dssp HHHHHHHHHHHHH----HHTTH-----HHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSS-CCHHHH
T ss_pred HHHHHHHHHHhhh----hhhhH-----HHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-------hcC-CCccch
Confidence 00000000000 00000 0000001111111111111000 0000011111100 001 000011
Q ss_pred hhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCcee
Q 008367 371 ASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPM 450 (568)
Q Consensus 371 ~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (568)
........+..++...+... +.+|.++| +.+..+...++++++.++..... . .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~----l~dr~Grr-------~~~~~~~~~~~~~~~~l~~~~~~---------------~-~ 367 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIM----TVDKFGRK-------PLQIIGALGMAIGMFSLGTAFYT---------------Q-A 367 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHCSH-------HHHHHHHHHHHHHHHHHHHHHHT---------------T-C
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHhhcCc-------chhccchHHHHHHHHHHHHHHhc---------------c-c
Confidence 11122222333333333333 45554333 45667777777776665544321 0 1
Q ss_pred ehhhHHHHHHHHH-HHHHHHhhhhHHhhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCc
Q 008367 451 TIFWQVPQYFIVG-CAEVFTFIGQLEFFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLN 529 (568)
Q Consensus 451 ~~~~~i~~~~l~g-~~~~~~~~~~~~~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~ 529 (568)
..+..+...++.. .......|..+.+..|++|.+.|++++|+.+..+.+++.+++.+.+.+.+......
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~---------- 437 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVA---------- 437 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHH----------
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 2222222222222 22333447788999999999999999999999999999999988887644221000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhhceecccccC
Q 008367 530 RGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKKATGR 566 (568)
Q Consensus 530 ~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~~~~~ 566 (568)
..+....|++++++++++.++.+++.||+|+|+.||.
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei 474 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL 474 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH
Confidence 0011246788899999999999999999999987763
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.94 E-value=1.9e-25 Score=234.95 Aligned_cols=356 Identities=11% Similarity=0.027 Sum_probs=231.9
Q ss_pred CCcceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH
Q 008367 26 GNWKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII 105 (568)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~ 105 (568)
++++.++.+.+..++..+......+.+| ++++++|.+..+.|++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~ 100 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLP-QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFL 100 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHH
Confidence 3455566666666777776665555555 47788999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHH---HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhh
Q 008367 106 YCLGMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFF 182 (568)
Q Consensus 106 ~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 182 (568)
.+++.+++ +.+ .+.+.++++|++.|++.|...+...++++|++|+++ |++++
T Consensus 101 ~~~~~~~~~~~~~~-------------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 155 (438)
T 3o7q_A 101 YALGAALFWPAAEI-------------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL 155 (438)
T ss_dssp HHHHHHHHHHHHHT-------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHH
T ss_pred HHHHHHHHHhcccc-------------------ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHH
Confidence 99999888 544 468889999999999999999999999999999998 99999
Q ss_pred hhHHHHHHHhHHHhhhhhhhee-cccc-------------------------chhhhhHHHHHHHHHHHHHHhcC-ceee
Q 008367 183 NWFYLSINIGALVASSVLVWIQ-MNVG-------------------------WGWGFGIPAVAMAIAVVFFFSGS-RLYR 235 (568)
Q Consensus 183 ~~~~~~~~ig~~~~p~~~~~i~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~~~ 235 (568)
++.+...++|..++|.+++.+. +..+ |++.|++.++..++..+..+..+ ++.+
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999887 5554 89999876655554444433322 1110
Q ss_pred ecCCCCChhHHHHHHHHHHHhhcccccCCcchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcc
Q 008367 236 IQKPGGSPLTRIMQVIVASFRKSNVVVPADKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRL 315 (568)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (568)
++++++++. ......+.+
T Consensus 236 ~~~~~~~~~------------------------------------------~~~~~~~~~-------------------- 253 (438)
T 3o7q_A 236 SDNHSDAKQ------------------------------------------GSFSASLSR-------------------- 253 (438)
T ss_dssp TTCCCCSST------------------------------------------TSHHHHHHH--------------------
T ss_pred ccccccccc------------------------------------------cchhhhHHH--------------------
Confidence 000000000 000000000
Q ss_pred cchhhHHHHHHHHHHHHHHHhhhHHHhhhccccceeEeecccccCCCCCCcccCchhhccccchhhhhhhhhhhhhhhhh
Q 008367 316 CTVTQVEELKAIIRLLPVWASGIVFATVYSQMSTMFVLQGNTMDQHMGPNFKIPSASLSLFDTLSVIFWAPIYDIVIVPF 395 (568)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 395 (568)
.. ++++.....+...+............+.++..+..+.+. ...+.+.....+..++..++.++ +
T Consensus 254 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~g~----l 318 (438)
T 3o7q_A 254 LA----RIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAANYLTGTMVCFFIGRFTGTW----L 318 (438)
T ss_dssp HT----TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HH----hChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 00 000111111111111111112222222220111101010 11122233333444444444444 4
Q ss_pred hhhhhCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHH
Q 008367 396 ARKLTGHERGFTQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLE 475 (568)
Q Consensus 396 ~~r~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~ 475 (568)
.+| .++++.+..+.++.+++++...... +. +....+++.+++.+...|..+.
T Consensus 319 ~~r-------~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-~~~~~~~~~g~~~~~~~~~~~~ 370 (438)
T 3o7q_A 319 ISR-------FAPHKVLAAYALIAMALCLISAFAG--------------------GH-VGLIALTLCSAFMSIQYPTIFS 370 (438)
T ss_dssp HHH-------SCHHHHHHHHHHHHHHHHHHHHHCC--------------------HH-HHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHH-------hcchHHHHHHHHHHHHHHHHHHHcC--------------------Cc-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455 3444566777777766665554332 22 2334457778888888999999
Q ss_pred hhhccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 008367 476 FFYDQAPDAMRSLCSALSLTTVAVGNYLSTLLVTIVTKVT 515 (568)
Q Consensus 476 ~~~~~~P~~~rg~~~g~~~~~~~lg~~lg~~l~~~i~~~~ 515 (568)
+..|..|++ ++.+.++.. .+.+|+.++|.+.+.+.+..
T Consensus 371 ~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 371 LGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999977 999999887 67799999999999988765
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=8.6e-24 Score=217.87 Aligned_cols=167 Identities=15% Similarity=0.104 Sum_probs=148.3
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008367 32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 111 (568)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~ 111 (568)
+.+.+..++.........+.++. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIAD-MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 45566677777777777777766 4567999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHHH
Q 008367 112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSINI 191 (568)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i 191 (568)
++..+ ++.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++
T Consensus 81 ~~~~~-------------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 81 VAVTT-------------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILV 135 (375)
T ss_dssp HHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHH
T ss_pred HHHHh-------------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHH
Confidence 98887 568889999999999999999999999999999988 99999999999999
Q ss_pred hHHHhhhhhhheeccccchhhhhHHHHHHHHHHH
Q 008367 192 GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVV 225 (568)
Q Consensus 192 g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~ 225 (568)
|..++|.+++++.+..||++.|++.++..++..+
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999989999999887766554443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.88 E-value=1e-23 Score=220.96 Aligned_cols=396 Identities=8% Similarity=-0.047 Sum_probs=222.6
Q ss_pred cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHH
Q 008367 28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYC 107 (568)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~ 107 (568)
.|+.+.+....++....+....++++.|+++++|+|..+.|++.+.+.++..++++++|+++||+ |||++++++.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 34566677777777777777889999999999999999999999999999999999999999999 99999998887665
Q ss_pred HHHHHH---HHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh
Q 008367 108 LGMTLL---TLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW 184 (568)
Q Consensus 108 i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 184 (568)
++...+ ...... ...++.++++.+++.|...+...+...++.++..+ .|+..++.
T Consensus 85 ~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLL------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp SCHHHHHHHTHHHHH------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 432211 222000 00123345555555544444444444444432211 16777777
Q ss_pred HHHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCceeeecCCCCChhHHHHHHHHHHHhhcccccCC
Q 008367 185 FYLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRLYRIQKPGGSPLTRIMQVIVASFRKSNVVVPA 264 (568)
Q Consensus 185 ~~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (568)
.+...++|..++|.+++++.+ .+|++.|++.++..++..+..+..+++ +++..+ .++
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~~~------------------~~~ 199 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSSAT------------------VAN 199 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCSSC------------------SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccccc------------------ccc
Confidence 777889999999999998876 589999987765533333222111111 100000 000
Q ss_pred cchhhhhhhhhhhhhccCccccCCccchhhhhhhhhccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHhhhHHHhhh
Q 008367 265 DKSLLYETADEECNIQGSRKLESTSKFKFFDKAAVETQTDRVKGSADPWRLCTVTQVEELKAIIRLLPVWASGIVFATVY 344 (568)
Q Consensus 265 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (568)
. ++ . +.++....+ ++ +..++ ++..............+..+
T Consensus 200 ~---------~~---~------~~~~~~~~~-----------------~~----~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2cfq_A 200 A---------VG---A------NHSAFSLKL-----------------AL----ELFRQ-PKLWFLSLYVIGVSCTYDVF 239 (417)
T ss_dssp S---------SS---S------CCCCCCHHH-----------------HH----HHTTC-HHHHHHHHHHHHHHHHHHHH
T ss_pred c---------cc---c------ccccccHHH-----------------HH----HHhcC-CchhhHHHHHHHHHHHHHHH
Confidence 0 00 0 000000000 00 00001 11111111111111111122
Q ss_pred -ccccceeEeecccccCCCCCCcc-cCchhhccccchhhhhhhhhhhhhhhhhhhhhhCCCCCCCchHHHHHHHHHHHHH
Q 008367 345 -SQMSTMFVLQGNTMDQHMGPNFK-IPSASLSLFDTLSVIFWAPIYDIVIVPFARKLTGHERGFTQLQRMGIGLLISIFS 422 (568)
Q Consensus 345 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~l~~~~ 422 (568)
++++.++... .... +.. ...+.....+.+..++...+.++ +.||. ++++.+..+.++.+++
T Consensus 240 ~~~~~~~~~~~---~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~-------g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 240 DQQFANFFTSF---FATG---EQGTRVFGYVTTMGELLNASIMFFAPL----IINRI-------GGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHHHT---SSSH---HHHTHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---Hhcc---CCChhHHHHHHHHHHHHHHHHHHHHHH----HHHHh-------cHHHHHHHHHHHHHHH
Confidence 1222222110 0000 000 00112222222333333444444 45553 3334566677666666
Q ss_pred HHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhHHHHHHH-HHHHHHHHH
Q 008367 423 MVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMRSLCSAL-SLTTVAVGN 501 (568)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~rg~~~g~-~~~~~~lg~ 501 (568)
++..... .+.+.++....+.+++.....+..+.++.|..|++.||++.++ ++..+.+|+
T Consensus 303 ~~~~~~~--------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~ 362 (417)
T 2cfq_A 303 IIGSSFA--------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAM 362 (417)
T ss_dssp HHHHTTC--------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHh--------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHH
Confidence 5444321 1334444445556666666667778999999999999999999 588889999
Q ss_pred HHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhceecc
Q 008367 502 YLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWIAKWFTYKK 562 (568)
Q Consensus 502 ~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~~~~~~~~~ 562 (568)
.++|.+.|.+.+.. ++...|.+.+++++++.++.++..|++++.+
T Consensus 363 ~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 363 IFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 99999999876532 2345678888888888877766666655443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.43 E-value=5e-13 Score=140.37 Aligned_cols=179 Identities=14% Similarity=0.139 Sum_probs=150.0
Q ss_pred cceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhc-cCchHHHHHHHHHH
Q 008367 28 WKACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSY-MGRFWTIASFSIIY 106 (568)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~-~Grk~~~~~~~~~~ 106 (568)
.|.++.+++..++..+.++++..++|.|+++.+|++..+.+++.+...++..++.++.|+++||+ .|||+.+.++.++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 35678888888999999999999999999988999999999999999999999999999999995 37888887776665
Q ss_pred H-HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008367 107 C-LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 185 (568)
Q Consensus 107 ~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (568)
. ++.+++.+. +. .+.+.+.+..++.|++.+...+....++.|.+|+++ |+++++++
T Consensus 331 ~~~~~~~~~~~---~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~ 387 (451)
T 1pw4_A 331 VTIATIVYWMN---PA--------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 387 (451)
T ss_dssp HHHHHHHTTSC---CT--------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHH
T ss_pred HHHHHHHHHHh---cc--------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHHH
Confidence 5 555444433 11 246667777788899888888888899999999988 99999999
Q ss_pred HHHHHH-hHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHh
Q 008367 186 YLSINI-GALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFS 229 (568)
Q Consensus 186 ~~~~~i-g~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~ 229 (568)
+...++ |..++|.+.+++.+..||+..|++.++..+++.++.+.
T Consensus 388 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 388 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999 99999999999999999999999888776666655444
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=1.1e-12 Score=137.21 Aligned_cols=169 Identities=16% Similarity=0.181 Sum_probs=137.9
Q ss_pred cceehhHhhHHHHHHHHHHHHHHHHHHH-HHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008367 28 WKACRFILGNECCERLAYYGMSTNLVNY-LQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 106 (568)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~y-l~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 106 (568)
.|.++..++..++....++.+..+++.| +++.+|.+..+.+...+.+.++..++.++.|+++||+ |||+.+.++.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3456777777888888888899999999 8888899999999999999999999999999999999 9999999999888
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHH
Q 008367 107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFY 186 (568)
Q Consensus 107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 186 (568)
+++.++.... .+... .+..++.|++.+...|...++..|.+|++ ++.+.++..
T Consensus 336 ~~~~~~~~~~-------------------~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 388 (438)
T 3o7q_A 336 MALCLISAFA-------------------GGHVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFIV 388 (438)
T ss_dssp HHHHHHHHHC-------------------CHHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHHH
T ss_pred HHHHHHHHHc-------------------CCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHHH
Confidence 8887777665 23333 33447788999999999999989988843 555666655
Q ss_pred HHHHHhHHHhhhhhhheecccc-chhhhhHHHHHHHHHHH
Q 008367 187 LSINIGALVASSVLVWIQMNVG-WGWGFGIPAVAMAIAVV 225 (568)
Q Consensus 187 ~~~~ig~~~~p~~~~~i~~~~g-~~~~f~~~~~~~~~~~~ 225 (568)
...+|..++|.+.|++.+..| ++..|++.++..++.++
T Consensus 389 -~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 389 -MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp -HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 567999999999999999998 99999877655444433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.34 E-value=1.7e-12 Score=135.53 Aligned_cols=177 Identities=7% Similarity=-0.004 Sum_probs=131.1
Q ss_pred eehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC---hhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHH
Q 008367 30 ACRFILGNECCERLAYYGMSTNLVNYLQKQLNQG---NVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIY 106 (568)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s---~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~ 106 (568)
..+...+..++....++....++|.|+.+.++.. ....+...+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~ 299 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIM 299 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHH
Confidence 3444444444545555566677888887665532 34456667777778888999999999999 9999998888877
Q ss_pred HHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhh-H
Q 008367 107 CLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNW-F 185 (568)
Q Consensus 107 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~ 185 (568)
+++..+.++. .+.+.+++..++.+++.+...+....+++|.+|++. |+++.++ +
T Consensus 300 ~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 354 (417)
T 2cfq_A 300 SVRIIGSSFA-------------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCF 354 (417)
T ss_dssp HHHHHHHTTC-------------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHh-------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHH
Confidence 7766555543 235556666666777766666677889999999887 9999998 5
Q ss_pred HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCc
Q 008367 186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSR 232 (568)
Q Consensus 186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 232 (568)
+...++|+.++|.++|++.+..|++..|.+.++..+++.++.+...+
T Consensus 355 ~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 355 CFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp TTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888999999999999988888988888877776666655444333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.19 E-value=5.4e-11 Score=126.50 Aligned_cols=185 Identities=11% Similarity=0.010 Sum_probs=137.3
Q ss_pred ehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHH-----HHHHH
Q 008367 31 CRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIA-----SFSII 105 (568)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~-----~~~~~ 105 (568)
.+.+++..++....+.....+++.|+++.++.+..+.+...+...+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 34455555666666667778889999988888878889999999999999999999999999 9886554 66666
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhH
Q 008367 106 YCLGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWF 185 (568)
Q Consensus 106 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 185 (568)
.+++..++........ .+...+.+.+++..++.|++.+...+....++.|.+|++. |+++.+++
T Consensus 364 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 427 (491)
T 4aps_A 364 AGLSFLLMAIPGALYG----------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSMW 427 (491)
T ss_dssp HHHHHTTTHHHHHHCC----------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHHH
T ss_pred HHHHHHHHHHHHHhcC----------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHH
Confidence 6666665554321100 0011345667777888999999999999999999999998 99999999
Q ss_pred HHHHHHhHHHhhhhhhheeccccchhhhhHHHHHHHHHHHHHHhcCce
Q 008367 186 YLSINIGALVASSVLVWIQMNVGWGWGFGIPAVAMAIAVVFFFSGSRL 233 (568)
Q Consensus 186 ~~~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 233 (568)
+...++|..++|.+.+++.+ .++.+.|++.+...+++.+..+...++
T Consensus 428 ~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 428 FLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988865 466777777766666665555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.05 E-value=5.5e-10 Score=118.59 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=123.4
Q ss_pred hhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHHHHHHHH
Q 008367 32 RFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSIIYCLGMT 111 (568)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~~~i~~~ 111 (568)
........+..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+....+++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 279 VIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHH
Confidence 3444444444444333444444556667888888777777788888999999999999999 999999999888888777
Q ss_pred HHHHhhhccCCCCCCCCCCCCCCCchhHHHHH-HHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHHHHH
Q 008367 112 LLTLTASVSGLKPSCDKDACHPTGAQTAVTFV-ALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYLSIN 190 (568)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 190 (568)
.++....... .....+.. ..+..+++ .+..|....+.+|.+|.+. |+++.++.+...+
T Consensus 358 ~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~~~ 416 (491)
T 4gc0_A 358 SLGTAFYTQA--------------PGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQW 416 (491)
T ss_dssp HHHHHHHTTC--------------CHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTT------HHHHHHHHHHHHH
T ss_pred HHHHHHhccc--------------chHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhH------HHHHHHHHHHHHH
Confidence 6655422111 22222222 22222232 2344677789999999999 9999999999999
Q ss_pred HhHHHhhhhhhheec------cccchhhhhHHHHHHHHHHHHHHhcCcee
Q 008367 191 IGALVASSVLVWIQM------NVGWGWGFGIPAVAMAIAVVFFFSGSRLY 234 (568)
Q Consensus 191 ig~~~~p~~~~~i~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 234 (568)
+|+.+++.+.+.+.+ ..++.+.|++.++..+++.+..++..||.
T Consensus 417 ~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 417 LANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 999999887766544 24566777777777666666665555543
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.92 E-value=1.2e-10 Score=119.14 Aligned_cols=164 Identities=12% Similarity=-0.024 Sum_probs=128.2
Q ss_pred ceehhHhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHhhhhhHHHHhhhccCchHHHHHHHHH-HH
Q 008367 29 KACRFILGNECCERLAYYGMSTNLVNYLQKQLNQGNVTASNNVTNWSGTCYITPLIGAFLADSYMGRFWTIASFSII-YC 107 (568)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~l~~yl~~~lg~s~~~~g~~~~~~~~~~~i~~~~~G~laDr~~Grk~~~~~~~~~-~~ 107 (568)
|.++...+..++....++....++|.|+++.+|.+..+.+...+...++..++.++.|+++||+ |++ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4567777888888888889999999999988999999999999999999999999999999999 772 2223222 22
Q ss_pred HHHHHHHHhhhccCCCCCCCCCCCCCCCchhHHHHHHHHHHHhhcccCcccccccccccCCCCCchhhhhhhhhhhhHHH
Q 008367 108 LGMTLLTLTASVSGLKPSCDKDACHPTGAQTAVTFVALYLIALGTGGIKPCVSSFGADQFDETDDGEREKKSSFFNWFYL 187 (568)
Q Consensus 108 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 187 (568)
.+..+...... +. .+.+.+++..++.|++.+...+...+++.|.+| ++ |+++.++.+.
T Consensus 276 ~~~~~~~~~~~-~~--------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~~ 333 (375)
T 2gfp_A 276 AGLLMWIPDWF-GV--------------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVGG 333 (375)
T ss_dssp TSSSSSHHHHH-HH--------------HHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHHH
T ss_pred HHHHHHHHhhh-cc--------------ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHHH
Confidence 22221111100 00 245667777888899999999999999999998 66 9999999999
Q ss_pred HHHHhHHHhhhhhhheeccccchhhhhHHH
Q 008367 188 SINIGALVASSVLVWIQMNVGWGWGFGIPA 217 (568)
Q Consensus 188 ~~~ig~~~~p~~~~~i~~~~g~~~~f~~~~ 217 (568)
..++|..++|.+.+.+.+..+|...+.+.+
T Consensus 334 ~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~ 363 (375)
T 2gfp_A 334 LQNIGSGVLASLSAMLPQTGQGSLGLLMTL 363 (375)
T ss_dssp HHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999999999999999988777887776644
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.14 E-value=4.1e-06 Score=89.40 Aligned_cols=113 Identities=14% Similarity=0.089 Sum_probs=84.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCceeehhhHHHHHHHHHHHHHHHhhhhHHhhhccCChhhH
Q 008367 407 TQLQRMGIGLLISIFSMVAAGILEVVRLNIVKRNNYYDIETIPMTIFWQVPQYFIVGCAEVFTFIGQLEFFYDQAPDAMR 486 (568)
Q Consensus 407 ~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~~~P~~~r 486 (568)
++++.+.++.++.+++.+...... .+.+.++...++.|++.+...|...+++.|.+|++.|
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r 143 (524)
T 2xut_A 83 GKYNTILWLSLIYCVGHAFLAIFE-------------------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK 143 (524)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTS-------------------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc-------------------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence 444577788888888777665432 1455667777888999999999999999999999999
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhhhhhccCCCccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 008367 487 SLCSAL---SLTTVAVGNYLSTLLVTIVTKVTTKNGKLGWIPDNLNRGHLDYFYWLLTILSVLNFLVYLWI 554 (568)
Q Consensus 487 g~~~g~---~~~~~~lg~~lg~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~v~~v~~~~~ 554 (568)
+.+.+. .+....+|..+++.+.+.+.+.. +| +..|++.+++.+++.+.+++.
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~----------~~~f~~~~~~~~~~~~~~~~~ 198 (524)
T 2xut_A 144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA----------AVAFGIPGVLMFVATVFFWLG 198 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH----------HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH----------HHHHHHHHHHHHHHHHHHHHh
Confidence 877766 88889999999999888776432 34 456777777777666555443
Done!