BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008368
(568 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JJA2|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus
GN=Cog8 PE=2 SV=3
Length = 640
Score = 331 bits (848), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/489 (36%), Positives = 274/489 (56%), Gaps = 22/489 (4%)
Query: 18 LPLASLSQQP----YVSELLSFTLDRLHKEPELLRVDAERIQR--QMQEVAVGNYRAFIA 71
P A ++P Y+ EL LDRL +EPE R+ ER QR Q +++A NY+ FI
Sbjct: 41 FPEAQWREKPDVGRYLRELSGSGLDRLRREPE--RLAEERAQRLQQTRDLAFANYKTFIR 98
Query: 72 AADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTL 131
A+ I ++ L ++ +P+ C F++ AEEI R+MN + L H+ +
Sbjct: 99 GAECTERIHRLFGDVEASLGRLLDRLPRFQQSCRNFVKEAEEISSSRRMNTLTLNRHTEI 158
Query: 132 LDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQL 191
L++LEIPQLMDTCVRN ++EAL+L AYV +L + +P+IQ + EV+Q+ Q +LSQL
Sbjct: 159 LEILEIPQLMDTCVRNSYHEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQL 218
Query: 192 LQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLK 251
+Q+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL IL + + Y ++
Sbjct: 219 IQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHIT 278
Query: 252 GMINCHRMHLFDVVNQYRAIFADDTS------GSEENYDGGLLFSWAMHQITAHLKTLKV 305
I R+HLFD++ QYRAIF+D+ G +G + W + +I+ L+ L+
Sbjct: 279 KTIEACRVHLFDIITQYRAIFSDEDPLLPPAMGEYTVNEGAIFHGWVLQKISQFLQVLET 338
Query: 306 MLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQ 365
L + G L ++L QCMY + VG DFRG L P+F+ + F K + AVE FQ
Sbjct: 339 DLYRGIGG-RLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAVEEAVEKFQ 397
Query: 366 LVLDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELR 421
+ S+ + A+ PA +V + PP L++ PPLA F+N + A N+LR
Sbjct: 398 DEMTSYTLISTAAILGSSNTPA-TVPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLR 456
Query: 422 PCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSLCRAFIEVAYPHC 479
C P++L + L L V+ ++L + + E +F+ C AF+E P+
Sbjct: 457 LCCPVALAQDVTGTLENALTKVTKTILAFHRAEEAVFSSGEHEIFVQFCTAFLEDLVPYL 516
Query: 480 ATCFGRCYP 488
C +P
Sbjct: 517 NRCLQVLFP 525
>sp|Q96MW5|COG8_HUMAN Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens
GN=COG8 PE=1 SV=2
Length = 612
Score = 329 bits (843), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/487 (35%), Positives = 269/487 (55%), Gaps = 18/487 (3%)
Query: 18 LPLASLSQQP----YVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAA 73
P A ++P Y+ EL L+RL +EPE L + ++ +Q +++A NY+ FI A
Sbjct: 35 FPEAQWRERPDVGRYLRELSGSGLERLRREPERLAEERAQLLQQTRDLAFANYKTFIRGA 94
Query: 74 DALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLD 133
+ I ++ L ++ +P C F++ AEEI R+MN + L H+ +L+
Sbjct: 95 ECTERIHRLFGDVEASLGRLLDRLPSFQQSCRNFVKEAEEISSNRRMNSLTLNRHTEILE 154
Query: 134 LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQ 193
+LEIPQLMDTCVRN Y+EAL+L AYV +L + +P+IQ + EV+Q+ Q +LSQL+Q
Sbjct: 155 ILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQ 214
Query: 194 KLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGM 253
+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL IL + + Y ++
Sbjct: 215 QLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKT 274
Query: 254 INCHRMHLFDVVNQYRAIFADD------TSGSEENYDGGLLFSWAMHQITAHLKTLKVML 307
I R+HLFD++ QYRAIF+D+ G + + W + +++ L+ L+ L
Sbjct: 275 IEASRVHLFDIITQYRAIFSDEDPLLPPAMGEHTVNESAIFHGWVLQKVSQFLQVLETDL 334
Query: 308 PKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLV 367
+ G L ++L QCMY + VG DFRG L P+F+ + F K + VE FQ
Sbjct: 335 YRGIGG-HLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTFQKAIQETVEKFQEE 393
Query: 368 LDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPC 423
++S+ + PA+ PA +V + PP L++ PPLA F+N + A N+LR C
Sbjct: 394 MNSYMLISAPAILGTSNMPA-AVPATQPGTLQPPMVLLDFPPLACFLNNILVAFNDLRLC 452
Query: 424 APLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSLCRAFIEVAYPHCAT 481
P++L + L L V+ +L + E LF+ C F+E P+
Sbjct: 453 CPVALAQDVTGALEDALAKVTKIILAFHRAEEAAFSSGEQELFVQFCTVFLEDLVPYLNR 512
Query: 482 CFGRCYP 488
C +P
Sbjct: 513 CLQVLFP 519
>sp|Q2TBH9|COG8_BOVIN Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus GN=COG8
PE=2 SV=1
Length = 626
Score = 328 bits (842), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 172/472 (36%), Positives = 267/472 (56%), Gaps = 12/472 (2%)
Query: 28 YVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSID 87
Y+ EL L+RL +EPE L + ++ +Q +++A NY+ FI A+ I ++
Sbjct: 55 YLRELSGSGLERLRREPERLAEERAQLLQQTRDLAFANYKTFIRGAECTERIHRLFGDVE 114
Query: 88 KHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRN 147
+ L ++ +P L C F++ AEEI R+MN + L H+ +L++LEIPQLMDTCVRN
Sbjct: 115 ESLGRLLDRLPSLQQSCRNFVKEAEEISSNRRMNTLTLNRHTEILEILEIPQLMDTCVRN 174
Query: 148 GNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRI 207
Y+EAL+L AYV +L + +P+IQ + EV+Q+ Q +LSQL+Q+LR+NIQLP CLR+
Sbjct: 175 SYYEEALELAAYVRRLERKYSSIPVIQGIVNEVRQSMQLMLSQLIQQLRTNIQLPACLRV 234
Query: 208 IGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQ 267
IG+LR++ VF+E E+R++FL+ R+AWL IL + + Y ++ I R+HLFD++ Q
Sbjct: 235 IGFLRQMDVFTEAELRVKFLQARDAWLRSILTAIPNDDPYFHITKTIEACRVHLFDIITQ 294
Query: 268 YRAIFADD------TSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILD 321
YRAIF+D+ G + + W + +++ L+ L+ L + G L ++L
Sbjct: 295 YRAIFSDEDPLLPPAMGEHMVNESAIFHGWVLQKVSQFLQVLETDLNRGI-GSRLDSLLG 353
Query: 322 QCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAV-G 380
QCMY + VG DFRG L P+F++ + F K + AVE FQ ++S+ + PAV G
Sbjct: 354 QCMYFGLSFSRVGADFRGQLVPVFQQVAISTFQKAIQEAVEKFQDEMNSYTLISTPAVLG 413
Query: 381 YPAHSVGEESQEDVT--PPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIK 438
A + T PP L++ PPLA F+N + A N+LR C P++L + L
Sbjct: 414 SSALPAAAPVTQPGTLQPPMVLLDFPPLACFLNSILVAFNDLRLCCPVALAQEVTRALED 473
Query: 439 GLQAVSDSLLRYSTTR--MLRENESGLFLSLCRAFIEVAYPHCATCFGRCYP 488
L V+ +L + E LF+ C F+E P+ C +P
Sbjct: 474 ALDKVTKVILAFHRAEEAAFSSGEQELFVQFCTVFLEDLVPYLNRCLQVLFP 525
>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila
melanogaster GN=CG6488 PE=2 SV=1
Length = 570
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/474 (32%), Positives = 266/474 (56%), Gaps = 15/474 (3%)
Query: 28 YVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSID 87
Y+++L + +++L KE L +A I Q Q++A+ NYR FI A+ +I E +
Sbjct: 36 YLAKLGTCKVEQLKKEQTRLAEEARTILEQTQDLAISNYRTFITTAENSRSIFSEFLRSE 95
Query: 88 KHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRN 147
+ LD++++++P L+ C F++ + E+ E+R++N + L ++ LL++LE+PQLM+ C+R
Sbjct: 96 QQLDTLVSKLPDLSVQCERFLQDSAELNEQRRLNSITLQKNAQLLEVLELPQLMERCIRE 155
Query: 148 GNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRI 207
G Y+EAL+L AY +L +P++ ++ V+ ++L QL+ +LR+++QLP+CL+I
Sbjct: 156 GRYEEALELAAYATRLGQHQGHIPVVTSIVRSVEALWHNMLVQLVAQLRTDLQLPKCLQI 215
Query: 208 IGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQ 267
+GYLRR+ F + E+RL+FL+ R+AWLT LE + +A ++L I R++LF+++ Q
Sbjct: 216 VGYLRRMQAFGDNELRLKFLQARDAWLTSCLEAIPTADAQQHLSKTIEITRINLFNIITQ 275
Query: 268 YRAIFADD-----TSGSEE-----NYDGGLLF-SWAMHQITAHLKTLKVMLPKITEGVSL 316
YRAIF +D T S + +G LF +W ++I+ L+TL+ L ++ G S+
Sbjct: 276 YRAIFPEDEGTLKTQSSLRPLQGVSCNGDRLFQAWLHNKISDFLQTLERDL-QLGVG-SV 333
Query: 317 SNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPL 376
+L QCMY + VG DFR L+ P+F + + F ++ E F+ L+ +
Sbjct: 334 ETVLGQCMYFGLSFSRVGADFRALMAPIFVGVIRRRFESSVEQVDEQFERELERFTLINK 393
Query: 377 PAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEEL 436
A+ A + QE PP L++ PLA NG +A+NELR CAPL+L + L
Sbjct: 394 VALHSHARKQVDPEQESYAPPEALLDFYPLAALCNGYLSALNELRLCAPLALATDVTRCL 453
Query: 437 IKGLQAVSDSLLRY--STTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYP 488
LQ + +L + + +E F+ LC P+ C +P
Sbjct: 454 QHSLQQAAQRVLAFYRQEQQAFAGSEREAFVRLCSCLAYDLVPYIQRCIHGVFP 507
>sp|Q55BB8|COG8_DICDI Conserved oligomeric Golgi complex subunit 8 OS=Dictyostelium
discoideum GN=cog8 PE=3 SV=1
Length = 779
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/424 (31%), Positives = 231/424 (54%), Gaps = 32/424 (7%)
Query: 91 DSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNY 150
+ +++ +P ++S C F + + E+R + LL N STLLD+LEIPQLMDTC++N ++
Sbjct: 43 NGLLSNLPTISSSCESFSSKSHSLTERRSSIKNLLDNFSTLLDILEIPQLMDTCIKNNSF 102
Query: 151 DEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGY 210
DEAL LE++ K+ + +I + E+K T+SL+S L Q+LR +I L C++ IGY
Sbjct: 103 DEALQLESFAKKIYKQYSNNTVIIEIIKEIKVCTRSLISTLQQQLRQDITLTNCIKTIGY 162
Query: 211 LRRIGVFSEYEMRLQFLRCREAWLTGILE-DLDQKNAYEYLKGMINCHRMHLFDVVNQYR 269
LRR+ ++ E E+++ FL R+ WL L+ D+ N YL + + R ++FD+V QY
Sbjct: 163 LRRLSIYKENELKIIFLHSRDQWLINSLKFDITNSNHVTYLTKLTDSCRTNIFDIVTQYN 222
Query: 270 AIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMG 329
AIF+++ S E+ D +L++W +I ++ + L I G S+S +L+ MY +M
Sbjct: 223 AIFSNE-SNDEDQLDDLILYNWIQQKIKVYINIVDSTLNHIKSGSSISYVLENSMYFSMS 281
Query: 330 LGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPA--------VGY 381
+ VG+DFR LL P+FE+ +L FL ++TA +F L ++++ PL
Sbjct: 282 ISRVGIDFRNLLEPIFEKHILNNFLSQITTANHHFLETLKTYKF-PLQKSTSPTSSTTST 340
Query: 382 PAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEEL----- 436
+ S S + ++PP +++H PLAV +N + + NEL+ C P+SL+ ++ +L
Sbjct: 341 SSSSSSSSSSQYISPPLSILQHQPLAVLVNLILKSFNELKDCFPISLRSIVILKLKELII 400
Query: 437 --IKGLQAVSDSLLRYSTTRMLRENE--------------SGLFLSLCRAFIEVAYPHCA 480
+ G+ + + LL + + ++ +F S C+ E P
Sbjct: 401 SIVGGVTSFYNQLLSNTISNLINSPSTTTTTTTTTITSSFDKVFHSFCKCLAEDFIPFIV 460
Query: 481 TCFG 484
CF
Sbjct: 461 KCFD 464
>sp|O44502|COG8_CAEEL Conserved oligomeric Golgi complex subunit 8 OS=Caenorhabditis
elegans GN=cogc-8 PE=3 SV=1
Length = 743
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 91/406 (22%), Positives = 182/406 (44%), Gaps = 22/406 (5%)
Query: 31 ELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHL 90
++ + L+ + ++ LL + + I Q+ ++A NY + A A + +
Sbjct: 12 DIRNMGLEEMRRQKVLLASELKAIDAQISDLAFNNYGTYADAGRATHDCSKTFGEMRDKT 71
Query: 91 DSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNY 150
++ + +LTS EF A+++ E++ + + L + + +LL +P MD C+R G Y
Sbjct: 72 VNLSDQAEELTSAFVEFRAKAKQLSEEQDLVRKALDKSNPIWELLTLPSRMDICIRAGYY 131
Query: 151 DEALDLEAY--VCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRII 208
D A L Y + T + P+I+ +A + + LL +L K + L E ++++
Sbjct: 132 DLAYTLTNYGLQLQQQTQLYRNPLIKKVADHLVEARAYLLEELFNKFAGPLDLAESIKVV 191
Query: 209 GYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQY 268
+R++ + ++R+ L+ R+ +L + LD + + I +R ++D + Y
Sbjct: 192 NNVRKMPSLTANQLRIAVLQHRDIYLEKQI--LDISGNVDMIVQAIEIYRTSMYDTLVLY 249
Query: 269 RAIFADDTSGSEENYDGGLLFSWAM---HQITAH--LKTLKVMLPKITE-----GVSLSN 318
A+F ++ + SW + + I + + +K ML IT+ V LS
Sbjct: 250 LAVFPENEVVRKNPNADPRWESWPVLPPNSILSQWVISNVKKMLDLITKADVKSAVDLSA 309
Query: 319 ILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPA 378
+ + M A G +G+DFR L+ + + + F +N+ A + S R + +
Sbjct: 310 VWTKLMAMASSFGRMGIDFRPLIAGKLTKLIEQRFRQNVQEATSR---LTGSSRDIVMIG 366
Query: 379 VGYPAHSVGEESQEDVTPPSYLME---HPPLAVFINGVSAAMNELR 421
+ PA E+ D +PP E + ++ N V A+N LR
Sbjct: 367 ID-PASLPQFETAPD-SPPVAAAELSLWDDMTIYTNSVVDALNGLR 410
>sp|Q96WW5|COG8_SCHPO Conserved oligomeric Golgi complex subunit 8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cog8 PE=3 SV=2
Length = 378
Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 75/349 (21%), Positives = 145/349 (41%), Gaps = 45/349 (12%)
Query: 29 VSELLSFTLD-------RLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAA---DALLA 78
V+E+ +F D L K L ++ ++ Q++ NY + A DA
Sbjct: 8 VTEMDAFVRDLTMKPYAELEKRKAELHAQKLKLVQKRQQLLRDNYNVLVDYARNQDAFYQ 67
Query: 79 IREEVSSIDKHLDSMITEIPKLTSGCTEFIES-AEEILEKRKMNQMLLANHSTLLDLLEI 137
+ E K L ++ + F+ S +E + + M+Q+ L +LE+
Sbjct: 68 LLENSRHDFKELVLHTNQLYEPVKRSQNFLTSISEHYRDAKLMHQV----QPQLSSILEL 123
Query: 138 PQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRS 197
P+LM+ C+ + E L+ +A +L IIQ L +V+ L +L+ +L+
Sbjct: 124 PELMNACIERNYFSETLEFQALAYRLKDRFGTNSIIQELITQVETLVVKLTEKLILQLQK 183
Query: 198 NIQLPECLRIIGYLRRIGVFSEYEMRLQFL----RCREAWLTGILEDLDQKNAYEYLKGM 253
++L ++++ YLR SE +++ FL + + L ++ LD N YL+
Sbjct: 184 PLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYFSWKQLQTSLRNLVPLLDYNNPELYLRRY 243
Query: 254 INCHRMHLFDVVNQYRAIFAD------------------DTSGSEENYDGGLLFSWAMHQ 295
I R F ++ QY+++F + TS S D ++ +
Sbjct: 244 IQVIRDRAFSLLFQYQSVFGESSNDRLNAAGTVDIPNSTSTSASPFEMDPEGFNNFGQNI 303
Query: 296 ITAHLKTLKV--------MLPKITEGVSLSNILDQCMYCAMGLGWVGLD 336
+++ ++ L++ +P + + S ++L Q YC L VG D
Sbjct: 304 LSSFVRKLQLEICYVLQKFMPNVKDSTSKFSLLLQLYYCNQSLTKVGTD 352
>sp|Q04632|COG8_YEAST Conserved oligomeric Golgi complex subunit 8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COG8 PE=1
SV=1
Length = 607
Score = 53.1 bits (126), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 124 LLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEV-KQ 182
+L N ++ DL+E+P L TC+R G+Y EA+ L + L + P I+ + +V +
Sbjct: 190 VLENLDSITDLMELPFLARTCIRTGHYQEAVMLYTHTTSLRSRFPGSTIVDEVCEKVLNE 249
Query: 183 TTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVF---SEYEMRLQFLRCREAWLTGILE 239
+ ++LS L++ L +N+ + +I+ YL I F + + FL R ++T +
Sbjct: 250 ISTTMLSGLVKLLSTNVSVNSLKKILQYLNSIPPFDGKTNKSLLSVFLAMRYKFITDEIA 309
Query: 240 D--LDQKNAYEYL-----KGMINCHRMHLFDVVNQYRAIFADDTSGSE 280
LD +++ E L K I R H++ +N + F DT+ E
Sbjct: 310 SYPLDVESSNESLIEMMVKRKIEVLREHVYMSLNVFLKSFLYDTNDLE 357
>sp|Q4V9Y0|VPS51_XENTR Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus
tropicalis GN=vps51 PE=2 SV=1
Length = 760
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 21/189 (11%)
Query: 37 LDRLHKEP---ELLRVDAERIQR------QMQEVAVGNYRAFIAAADALLAIREEVSSID 87
L +L KE +L+ V+A+ +++ +MQ + NY FI+A D + ++ + ++
Sbjct: 55 LTKLRKESSLSQLMDVEADMVRQIRSLDSEMQTLVYENYNKFISATDTIRKMKNDFKKME 114
Query: 88 KHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLD----LLEIPQLMDT 143
+D + T + + TEF L++R L+ TLL L E+P +
Sbjct: 115 DEMDGLATNMAVI----TEFSARISSTLQERHQQITKLSGVHTLLRKLQFLFELPARLKK 170
Query: 144 CVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLR----SNI 199
C+ G Y +A+ + + + +P + + + L L Q+ R S
Sbjct: 171 CIELGAYAQAVSYHSKARSVLHQYQHMPSFHGIQTDCQAIMAGLADTLRQRFRDPASSPQ 230
Query: 200 QLPECLRII 208
L EC+ ++
Sbjct: 231 DLSECVEML 239
>sp|Q9UID3|VPS51_HUMAN Vacuolar protein sorting-associated protein 51 homolog OS=Homo
sapiens GN=VPS51 PE=1 SV=2
Length = 782
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 58 MQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK 117
MQ + NY FI+A D + ++ + ++ +D + T + +T +F L+
Sbjct: 104 MQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVIT----DFSARISATLQD 159
Query: 118 RKMNQMLLANHSTLLD----LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPII 173
R LA LL L E+P + CV G Y +A+ + + + LP
Sbjct: 160 RHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRAQAVLQQYQHLPSF 219
Query: 174 QALAAEVKQTTQSLLSQLLQKLR 196
+A+ + + T L QL Q+ R
Sbjct: 220 RAIQDDCQVITARLAQQLRQRFR 242
>sp|Q3UVL4|VPS51_MOUSE Vacuolar protein sorting-associated protein 51 homolog OS=Mus
musculus GN=Vps51 PE=2 SV=2
Length = 782
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 58 MQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK 117
MQ + NY FI+A D + ++ + ++ +D + T + +T+ F L+
Sbjct: 104 MQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVITN----FSARISATLQD 159
Query: 118 RKMNQMLLANHSTLLD----LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPII 173
R LA LL L E+P + CV G Y +A+ + + + LP
Sbjct: 160 RHERITKLAGVHALLRKLQFLFELPSRLTKCVELGAYGQAVRYQGRARAVLQQYQHLPSF 219
Query: 174 QALAAEVKQTTQSLLSQLLQKLR 196
+A+ + + T L QL Q+ R
Sbjct: 220 RAIQDDCQVITARLAQQLRQRFR 242
>sp|A6QQ47|VPS51_BOVIN Vacuolar protein sorting-associated protein 51 homolog OS=Bos
taurus GN=VPS51 PE=2 SV=1
Length = 781
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 60/139 (43%)
Query: 58 MQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK 117
MQ + NY FI+A D + ++ + ++ +D + T + +T + ++ E+
Sbjct: 103 MQTLVYENYNKFISATDTIRKMKNDFRKMEDEMDRLATNMAVITDFSARISATLQDPHER 162
Query: 118 RKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALA 177
+ A L L E+P + CV G Y +A+ + + + LP +A+
Sbjct: 163 ITKLAGVHALLRKLQILFELPSRLTKCVELGAYGQAVRYQGRARAVLQQYQHLPSFRAIQ 222
Query: 178 AEVKQTTQSLLSQLLQKLR 196
+ + T L QL Q+ R
Sbjct: 223 DDCQVITARLAQQLRQRFR 241
>sp|Q505L3|VPS51_XENLA Vacuolar protein sorting-associated protein 51 homolog OS=Xenopus
laevis GN=vps51 PE=2 SV=1
Length = 757
Score = 46.2 bits (108), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 37 LDRLHKEP---ELLRVDAERIQR------QMQEVAVGNYRAFIAAADALLAIREEVSSID 87
L +L KE +L+ V+A+ +++ +MQ + NY FI+A D + ++ + ++
Sbjct: 52 LTKLRKESSLSQLMDVEADMVRQIRSLDSEMQTLVYENYNKFISATDTIRKMKNDFKKME 111
Query: 88 KHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLD----LLEIPQLMDT 143
+D + + + + TEF L+ L+ TLL L E+P +
Sbjct: 112 DEMDGLASNMAVI----TEFSARISSTLQVSHQQITKLSGVHTLLRKLQFLFELPARLKK 167
Query: 144 CVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLR----SNI 199
C+ G Y +A+ + + + +P + + + L L Q+ R S
Sbjct: 168 CIELGAYGQAVSYHSKARSVLHQYQHMPSFHGIQTDCQAIMAGLADTLRQRFRDPASSPQ 227
Query: 200 QLPECLRII 208
+L EC+ ++
Sbjct: 228 ELSECVEML 236
>sp|O01839|VPS51_CAEEL Vacuolar protein sorting-associated protein 51 homolog
OS=Caenorhabditis elegans GN=B0414.8 PE=1 SV=2
Length = 700
Score = 39.7 bits (91), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 97/211 (45%), Gaps = 10/211 (4%)
Query: 36 TLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMIT 95
+LD L KE E + R+ + ++ NY F+ A + + I++E + LDS +
Sbjct: 26 SLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATNTVRKIQDEFT----QLDSEMK 81
Query: 96 EIPKLTSGCTEFIESAEEILEKRKMNQMLLANH----STLLDLLEIPQLMDTCVRNGNYD 151
+ + S + I + + +L +++ + + L + ++L + ++P ++ + NY
Sbjct: 82 SLSRSMSTISTLIGNLDGVLGEKRDDILQLGSSYKVVNSLKHIFDLPHVLRSEFDERNYG 141
Query: 152 EALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECL-RIIGY 210
E L + + + + +P +Q + + K+ +QL+ +LR+ E + +
Sbjct: 142 EVLRMFKLAEESLSQYKDVPTVQLVLQKSKKIYDMTENQLMDQLRNPASGAELVSEAVDL 201
Query: 211 LRRIGVFSEYEMRLQFLRCREAWLTGILEDL 241
L IG E E++ L C E L L++L
Sbjct: 202 LLTIG-RDEDEVQKVLLTCSEQSLRVDLKEL 231
>sp|Q155U0|VPS51_DANRE Vacuolar protein sorting-associated protein 51 homolog OS=Danio
rerio GN=vps51 PE=2 SV=1
Length = 827
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 58 MQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK 117
MQ + NY FI+A D + ++ + ++ +D + + + TEF L+
Sbjct: 87 MQTLVYENYNKFISATDTIRKMKNDFKKMEDEMDCLSANM----AAITEFSARISGTLQD 142
Query: 118 RKMNQMLLANHSTLLD----LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPII 173
+ L+ TLL L E+P ++ C+ Y +A+ + + +P
Sbjct: 143 QHAQITKLSGVHTLLRKLQFLFELPARLNKCLELQAYAQAVSSHRRARCVLQQYSHMPSF 202
Query: 174 QALAAEVKQTTQSLLSQLLQKLR----SNIQLPECLRII 208
+ + + + L QL QK R S L EC+ ++
Sbjct: 203 RGIQDDCHVIMEQLAQQLRQKFRDGGSSAKDLSECVELL 241
>sp|Q8MSY4|VPS51_DROME Vacuolar protein sorting-associated protein 51 homolog
OS=Drosophila melanogaster GN=CG15087 PE=2 SV=1
Length = 740
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/177 (19%), Positives = 82/177 (46%), Gaps = 21/177 (11%)
Query: 37 LDRLHKEPELLRV---------DAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSID 87
L+RL K+ L ++ D + + MQ + NY FI+A D + ++++ ++
Sbjct: 22 LERLLKDCSLKQIMDTEAAVVKDTQTLHSDMQTLVYENYNKFISATDTIRRMKDDFKQME 81
Query: 88 KHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLE----IPQLMDT 143
++ ++T++ +T+ F E L+ + L+ +LL L+ +P + +
Sbjct: 82 TDVNLLMTKMQSITT----FSEQITGTLQGTRSQLCRLSEKHSLLKRLQFLSTLPAKLKS 137
Query: 144 CVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQ 200
+ NY +A+ + K+ + + P +++ ++++ L ++LRS+ Q
Sbjct: 138 LIEEQNYAQAVQDYLHAQKVFAQYGRQPSFDG----IQRDCDAIMADLKEQLRSDFQ 190
>sp|A2SBU8|RECA_METPP Protein RecA OS=Methylibium petroleiphilum (strain PM1) GN=recA
PE=3 SV=1
Length = 357
Score = 33.1 bits (74), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 19/134 (14%)
Query: 93 MITEIPKLTSGCTEFIESAEEILEKR-------KMNQMLLANHSTLLDLLEIPQLMDTCV 145
+I E+ KL C FI+ AE L+ + + ++L++ T LEI +D V
Sbjct: 86 VIAEMQKLAGTCA-FID-AEHALDSQYAQKLGVNLQELLISQPDTGEQALEI---VDALV 140
Query: 146 RNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECL 205
R+G+ D + V ++ L PK + + + L+SQ L+KL + I+ C+
Sbjct: 141 RSGSVDLIV-----VDSVAALTPKAELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCM 195
Query: 206 RI-IGYLR-RIGVF 217
I I +R +IGV
Sbjct: 196 VIFINQIRMKIGVM 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 205,927,058
Number of Sequences: 539616
Number of extensions: 8645489
Number of successful extensions: 23733
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 23678
Number of HSP's gapped (non-prelim): 59
length of query: 568
length of database: 191,569,459
effective HSP length: 123
effective length of query: 445
effective length of database: 125,196,691
effective search space: 55712527495
effective search space used: 55712527495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)