Query 008368
Match_columns 568
No_of_seqs 229 out of 417
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 22:56:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2069 Golgi transport comple 100.0 2.9E-83 6.2E-88 681.3 47.8 476 16-494 13-494 (581)
2 PF04124 Dor1: Dor1-like famil 100.0 5E-66 1.1E-70 542.7 37.7 333 29-362 1-338 (338)
3 KOG2346 Uncharacterized conser 100.0 1.4E-32 3.1E-37 286.9 24.1 216 14-234 22-245 (636)
4 PF15469 Sec5: Exocyst complex 99.8 2.2E-18 4.7E-23 166.3 19.9 169 56-230 2-182 (182)
5 KOG2347 Sec5 subunit of exocys 99.4 5E-12 1.1E-16 141.3 16.9 216 18-239 166-391 (934)
6 PF08700 Vps51: Vps51/Vps67; 99.2 2.4E-10 5.2E-15 97.0 10.6 82 20-101 3-85 (87)
7 PF10475 DUF2450: Protein of u 98.7 3.2E-05 7E-10 80.3 31.4 171 22-195 12-188 (291)
8 PF04100 Vps53_N: Vps53-like, 98.7 6.2E-05 1.3E-09 81.1 34.1 169 21-196 2-182 (383)
9 KOG2033 Low density lipoprotei 98.6 0.00031 6.8E-09 78.1 34.5 201 30-240 11-230 (863)
10 KOG2180 Late Golgi protein sor 98.0 0.034 7.4E-07 62.8 35.3 169 21-196 17-197 (793)
11 KOG3691 Exocyst complex subuni 97.6 0.0035 7.5E-08 71.8 19.3 169 29-197 36-206 (982)
12 PF10392 COG5: Golgi transport 97.5 0.0024 5.3E-08 58.6 13.2 82 21-102 6-93 (132)
13 KOG2215 Exocyst complex subuni 97.4 0.015 3.2E-07 66.2 20.9 335 130-494 283-644 (673)
14 PF06148 COG2: COG (conserved 97.4 0.00011 2.5E-09 67.4 3.0 103 20-125 10-113 (133)
15 PF10191 COG7: Golgi complex c 97.4 0.33 7.3E-06 57.1 31.9 141 134-276 130-277 (766)
16 KOG2176 Exocyst complex, subun 96.9 1.4 3.1E-05 50.9 39.7 118 43-163 49-169 (800)
17 PF04048 Sec8_exocyst: Sec8 ex 96.3 0.096 2.1E-06 48.7 13.2 122 22-144 20-142 (142)
18 PF07393 Sec10: Exocyst comple 95.0 9.9 0.00021 44.5 27.2 82 151-234 75-159 (710)
19 KOG2115 Vacuolar sorting prote 94.7 8.3 0.00018 45.5 23.4 130 66-195 267-398 (951)
20 PF06248 Zw10: Centromere/kine 94.3 13 0.00028 42.7 46.8 161 35-195 7-174 (593)
21 KOG2307 Low density lipoprotei 93.1 18 0.0004 40.6 29.5 78 21-101 31-109 (705)
22 PF04129 Vps52: Vps52 / Sac2 f 92.8 13 0.00029 41.8 20.8 160 66-232 20-201 (508)
23 KOG2069 Golgi transport comple 92.2 1.9 4.1E-05 48.3 12.7 243 15-276 23-278 (581)
24 PF04124 Dor1: Dor1-like famil 92.1 18 0.0004 38.4 25.5 238 19-275 3-309 (338)
25 KOG0412 Golgi transport comple 89.7 46 0.00099 38.6 37.6 194 35-228 31-237 (773)
26 KOG3745 Exocyst subunit - Sec1 86.7 72 0.0016 37.4 29.4 291 27-340 52-351 (763)
27 KOG1961 Vacuolar sorting prote 86.5 65 0.0014 36.7 22.2 171 68-238 69-270 (683)
28 PF04136 Sec34: Sec34-like fam 83.6 40 0.00088 31.9 14.4 50 75-124 15-64 (157)
29 PF07139 DUF1387: Protein of u 83.6 27 0.00058 36.5 13.7 104 46-158 154-269 (302)
30 PF06160 EzrA: Septation ring 80.7 1.1E+02 0.0024 34.9 22.0 128 64-191 91-235 (560)
31 PF09763 Sec3_C: Exocyst compl 73.9 1.9E+02 0.0041 34.0 24.3 103 51-153 7-116 (701)
32 cd02680 MIT_calpain7_2 MIT: do 63.4 27 0.00059 29.0 6.3 35 147-181 19-53 (75)
33 PF06419 COG6: Conserved oligo 62.5 3E+02 0.0064 31.9 42.8 226 49-276 16-280 (618)
34 PF07899 Frigida: Frigida-like 58.9 15 0.00033 38.3 5.0 52 137-189 177-228 (290)
35 KOG2391 Vacuolar sorting prote 58.2 2.6E+02 0.0057 29.9 14.3 33 183-215 314-347 (365)
36 PF05478 Prominin: Prominin; 57.7 58 0.0013 38.9 10.3 101 19-128 602-707 (806)
37 PF10552 ORF6C: ORF6C domain; 54.5 1.5E+02 0.0033 26.3 10.1 88 69-158 3-103 (116)
38 KOG2211 Predicted Golgi transp 54.5 4.1E+02 0.009 31.1 18.1 99 43-148 76-181 (797)
39 PF04190 DUF410: Protein of un 53.4 2.2E+02 0.0048 29.1 12.4 92 145-248 1-92 (260)
40 KOG2148 Exocyst protein Sec3 [ 53.3 4.3E+02 0.0093 30.9 16.3 104 51-154 195-305 (867)
41 PF14853 Fis1_TPR_C: Fis1 C-te 52.2 46 0.00099 25.7 5.5 40 143-185 10-49 (53)
42 KOG4514 Uncharacterized conser 51.0 1.6E+02 0.0035 28.6 10.0 93 37-136 127-219 (222)
43 PF13870 DUF4201: Domain of un 49.6 2.4E+02 0.0052 26.9 12.9 108 35-146 42-149 (177)
44 TIGR00756 PPR pentatricopeptid 49.4 26 0.00057 22.7 3.4 24 139-162 5-28 (35)
45 PF10158 LOH1CR12: Tumour supp 48.8 84 0.0018 28.9 7.6 65 36-100 43-113 (131)
46 PF13176 TPR_7: Tetratricopept 47.0 30 0.00064 23.8 3.4 24 142-165 7-30 (36)
47 PF04437 RINT1_TIP1: RINT-1 / 46.8 4.6E+02 0.0099 29.3 18.2 183 245-442 29-223 (494)
48 PF04212 MIT: MIT (microtubule 45.9 85 0.0018 24.9 6.5 19 146-164 17-35 (69)
49 PF08580 KAR9: Yeast cortical 44.9 5.9E+02 0.013 30.0 19.7 31 67-97 43-73 (683)
50 cd02678 MIT_VPS4 MIT: domain c 44.2 86 0.0019 25.6 6.3 21 144-164 16-36 (75)
51 cd02683 MIT_1 MIT: domain cont 44.0 88 0.0019 25.9 6.4 47 146-192 18-71 (77)
52 PF03357 Snf7: Snf7; InterPro 43.3 1.7E+02 0.0037 27.1 9.1 113 74-186 1-119 (171)
53 smart00745 MIT Microtubule Int 41.8 99 0.0021 25.0 6.4 19 147-165 21-39 (77)
54 COG5314 Conjugal transfer/entr 41.7 3E+02 0.0064 28.0 10.6 74 21-94 35-120 (252)
55 KOG2215 Exocyst complex subuni 41.3 92 0.002 36.3 8.0 62 19-83 10-74 (673)
56 PF09177 Syntaxin-6_N: Syntaxi 40.3 2.4E+02 0.0051 24.2 8.9 52 72-124 37-88 (97)
57 PF10157 DUF2365: Uncharacteri 39.3 3.4E+02 0.0073 25.6 12.3 95 35-136 52-146 (149)
58 cd02656 MIT MIT: domain contai 39.0 1.1E+02 0.0025 24.6 6.3 19 147-165 19-37 (75)
59 KOG4572 Predicted DNA-binding 38.5 7.6E+02 0.017 29.7 14.4 41 157-197 410-450 (1424)
60 PF13041 PPR_2: PPR repeat fam 38.4 70 0.0015 23.4 4.6 36 139-175 8-43 (50)
61 PF08429 PLU-1: PLU-1-like pro 37.9 5E+02 0.011 27.2 13.3 156 82-255 28-190 (335)
62 cd02682 MIT_AAA_Arch MIT: doma 37.7 1.1E+02 0.0024 25.4 6.0 35 144-178 16-54 (75)
63 PF06103 DUF948: Bacterial pro 37.4 2.2E+02 0.0047 23.9 8.0 18 74-91 26-43 (90)
64 PF01535 PPR: PPR repeat; Int 36.6 45 0.00098 21.2 2.9 23 139-161 5-27 (31)
65 PF12352 V-SNARE_C: Snare regi 35.5 2.2E+02 0.0047 22.3 7.9 61 38-99 1-61 (66)
66 PF14712 Snapin_Pallidin: Snap 35.0 2.3E+02 0.005 23.7 7.8 65 35-99 21-89 (92)
67 cd02681 MIT_calpain7_1 MIT: do 35.0 99 0.0022 25.7 5.3 21 146-166 18-38 (76)
68 cd02684 MIT_2 MIT: domain cont 34.3 1.1E+02 0.0023 25.3 5.4 48 147-195 19-70 (75)
69 PF14394 DUF4423: Domain of un 34.3 2.1E+02 0.0046 27.4 8.2 75 190-267 44-154 (171)
70 KOG3684 Ca2+-activated K+ chan 34.2 3E+02 0.0064 30.7 10.1 88 59-147 388-477 (489)
71 PF02151 UVR: UvrB/uvrC motif; 34.1 61 0.0013 22.7 3.4 30 135-164 5-34 (36)
72 PF13812 PPR_3: Pentatricopept 33.6 65 0.0014 21.0 3.4 24 139-162 6-29 (34)
73 KOG2180 Late Golgi protein sor 33.6 8.7E+02 0.019 28.7 20.1 166 170-349 88-287 (793)
74 KOG0972 Huntingtin interacting 33.3 6E+02 0.013 26.8 13.3 70 24-101 245-318 (384)
75 PF06103 DUF948: Bacterial pro 32.5 3E+02 0.0065 23.0 8.9 41 75-115 20-60 (90)
76 PRK06975 bifunctional uroporph 31.7 8.9E+02 0.019 28.3 16.4 132 41-187 345-476 (656)
77 PF10392 COG5: Golgi transport 30.6 4.1E+02 0.0089 24.1 11.5 60 48-107 32-91 (132)
78 PF08317 Spc7: Spc7 kinetochor 30.4 5.6E+02 0.012 27.0 11.5 11 45-55 159-169 (325)
79 KOG4673 Transcription factor T 30.4 9.7E+02 0.021 28.3 17.9 43 22-64 401-445 (961)
80 cd02677 MIT_SNX15 MIT: domain 30.2 2.7E+02 0.0058 23.0 7.1 50 146-195 18-71 (75)
81 PF02374 ArsA_ATPase: Anion-tr 30.0 1.5E+02 0.0032 31.1 7.0 82 129-217 138-237 (305)
82 PF14276 DUF4363: Domain of un 30.0 2.7E+02 0.0057 24.7 7.7 62 108-169 51-112 (121)
83 PF08463 EcoEI_R_C: EcoEI R pr 29.6 3E+02 0.0066 25.6 8.4 105 152-264 2-124 (164)
84 PF13374 TPR_10: Tetratricopep 29.2 72 0.0016 21.6 3.2 25 142-166 10-34 (42)
85 COG4477 EzrA Negative regulato 29.1 9.1E+02 0.02 27.6 17.3 131 68-198 98-245 (570)
86 PF09726 Macoilin: Transmembra 29.1 6.1E+02 0.013 30.0 12.3 67 34-100 544-613 (697)
87 KOG0810 SNARE protein Syntaxin 28.1 6E+02 0.013 26.7 10.9 55 35-90 33-87 (297)
88 PF14559 TPR_19: Tetratricopep 28.0 95 0.0021 23.7 4.0 36 140-178 31-66 (68)
89 PF10516 SHNi-TPR: SHNi-TPR; 27.9 74 0.0016 22.8 2.9 26 142-167 9-34 (38)
90 PF05531 NPV_P10: Nucleopolyhe 27.7 3.6E+02 0.0079 22.5 7.9 34 68-101 5-38 (75)
91 COG1730 GIM5 Predicted prefold 27.6 4.1E+02 0.0088 25.0 8.6 46 35-81 6-51 (145)
92 KOG2211 Predicted Golgi transp 27.5 1.1E+03 0.023 27.9 23.4 74 35-108 205-279 (797)
93 PTZ00464 SNF-7-like protein; P 27.3 6.3E+02 0.014 25.1 12.7 116 70-185 14-138 (211)
94 PRK10884 SH3 domain-containing 27.2 3.4E+02 0.0073 27.0 8.5 42 22-63 78-121 (206)
95 KOG4603 TBP-1 interacting prot 26.9 3.2E+02 0.0069 26.5 7.7 17 148-164 159-175 (201)
96 PRK15422 septal ring assembly 26.9 1.7E+02 0.0037 24.6 5.2 56 32-98 22-77 (79)
97 COG4477 EzrA Negative regulato 26.9 9.9E+02 0.021 27.3 18.7 159 23-192 88-265 (570)
98 PF00515 TPR_1: Tetratricopept 26.2 89 0.0019 20.6 3.1 22 143-164 10-31 (34)
99 PF13424 TPR_12: Tetratricopep 26.0 87 0.0019 24.8 3.5 26 144-169 15-40 (78)
100 PF13181 TPR_8: Tetratricopept 26.0 1E+02 0.0023 20.1 3.4 23 143-165 10-32 (34)
101 PF10805 DUF2730: Protein of u 25.8 4.3E+02 0.0094 23.2 8.1 16 118-133 81-96 (106)
102 PF13174 TPR_6: Tetratricopept 25.6 73 0.0016 20.5 2.5 23 144-169 10-32 (33)
103 PF07719 TPR_2: Tetratricopept 25.2 97 0.0021 20.1 3.1 22 143-164 10-31 (34)
104 PF00038 Filament: Intermediat 25.0 7.7E+02 0.017 25.4 12.9 48 56-103 198-245 (312)
105 COG1196 Smc Chromosome segrega 25.0 1.4E+03 0.031 28.5 22.0 24 219-242 974-997 (1163)
106 KOG0414 Chromosome condensatio 25.0 6.5E+02 0.014 31.4 11.6 115 148-264 246-371 (1251)
107 cd00280 TRFH Telomeric Repeat 23.8 4.7E+02 0.01 25.8 8.4 22 140-161 117-138 (200)
108 PHA03395 p10 fibrous body prot 23.5 3.3E+02 0.0071 23.4 6.4 34 68-101 5-38 (87)
109 PF04924 Pox_A6: Poxvirus A6 p 22.8 6.1E+02 0.013 27.1 9.6 85 190-276 120-209 (371)
110 PF13428 TPR_14: Tetratricopep 22.8 1.5E+02 0.0031 21.2 3.8 30 142-174 9-38 (44)
111 PHA02557 22 prohead core prote 22.3 7.8E+02 0.017 25.5 10.1 79 25-103 89-170 (271)
112 PF06160 EzrA: Septation ring 21.8 1.2E+03 0.026 26.6 18.0 120 35-156 101-230 (560)
113 TIGR03545 conserved hypothetic 21.7 5.4E+02 0.012 29.5 9.9 19 148-166 292-310 (555)
114 KOG3208 SNARE protein GS28 [In 21.5 7.1E+02 0.015 25.1 9.3 83 38-135 142-224 (231)
115 COG5173 SEC6 Exocyst complex s 21.3 1.3E+03 0.028 26.7 19.3 27 134-160 180-206 (742)
116 PF04100 Vps53_N: Vps53-like, 21.3 1.1E+03 0.023 25.7 23.8 38 336-373 346-383 (383)
117 PRK04778 septation ring format 21.2 1.3E+03 0.027 26.5 21.7 131 65-195 96-243 (569)
118 PF05053 Menin: Menin; InterP 21.1 2E+02 0.0042 33.0 6.0 52 143-194 327-378 (618)
119 COG2959 HemX Uncharacterized e 21.0 1.1E+03 0.024 25.7 15.9 48 141-189 144-191 (391)
120 KOG0018 Structural maintenance 20.9 4.8E+02 0.01 32.1 9.4 76 36-115 822-897 (1141)
121 PF14728 PHTB1_C: PTHB1 C-term 20.9 3.9E+02 0.0086 29.0 8.2 63 35-97 214-291 (377)
122 COG3883 Uncharacterized protei 20.4 9.7E+02 0.021 24.8 10.4 106 35-164 38-143 (265)
123 PF02284 COX5A: Cytochrome c o 20.3 6.3E+02 0.014 22.6 8.0 47 139-187 50-96 (108)
124 PF00957 Synaptobrevin: Synapt 20.1 5.1E+02 0.011 21.5 7.3 38 49-86 6-43 (89)
No 1
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-83 Score=681.30 Aligned_cols=476 Identities=43% Similarity=0.720 Sum_probs=453.4
Q ss_pred CCCCCCCCChHHHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHh
Q 008368 16 SLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMIT 95 (568)
Q Consensus 16 ~~~~l~s~~~~~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~ 95 (568)
+.+. .+++.++|+.+|.++++++|.+|++.|+.+++.++.++|+|+..||++||+++++++.+...++.++.+...|..
T Consensus 13 ~~~~-~~~~~~~~v~~l~~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l 91 (581)
T KOG2069|consen 13 DSLR-NSPEMDAYVRELTTKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSL 91 (581)
T ss_pred HHhc-cCchhHHHHHHHcCCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3344 488999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHH
Q 008368 96 EIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQA 175 (568)
Q Consensus 96 ~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~ 175 (568)
.++.+++.|.+|.+....+.+.|+.+..++..++.+++++|||++|+.||++|+|+||+++.+++.++..+++..|++++
T Consensus 92 ~~~~L~s~~~~f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~ 171 (581)
T KOG2069|consen 92 QLPELTSPCKRFQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQE 171 (581)
T ss_pred hhHHhhhHHHHHHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHH
Q 008368 176 LAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMIN 255 (568)
Q Consensus 176 I~~ev~~~~~~l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie 255 (568)
|..++...+..|+.+|..+|++++++++|+|+|+|||+++.+++.++|..||++|++|+.+.+..|+..+++.|++++|+
T Consensus 172 i~~~v~~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~~~~~~l~~~i~ 251 (581)
T KOG2069|consen 172 IATEVEQTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTNNPYLYLKKTIE 251 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCCCCC------chhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhh
Q 008368 256 CHRMHLFDVVNQYRAIFADDTSGSEENYD------GGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMG 329 (568)
Q Consensus 256 ~~R~~lfdivtqY~aiF~~~~~~~~~~~~------~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~S 329 (568)
++|.|+|++++||++|||++++.++.+.+ .+++..|..+.+..|+.++..++.+.. .++++||+||||||.|
T Consensus 252 ~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~--~~l~~vl~~cmyf~~S 329 (581)
T KOG2069|consen 252 IIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI--ESLEHVLGQLMYFALS 329 (581)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh--chHHHHHHHHHHHHHh
Confidence 99999999999999999999876443332 468999999999999999999998753 3999999999999999
Q ss_pred hhhcccchhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCCCCCCCCCCCCCCCcccccchHHHHH
Q 008368 330 LGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVF 409 (568)
Q Consensus 330 L~rvG~DF~~ll~~l~~~~~~~~f~~~~~~a~~~f~~~l~~~~w~~~~~~~~~s~~~~~~~~~~~~pP~~L~~~~pLa~~ 409 (568)
|||+|+|||++++|+|++.+.++|.+++++++++|+..|.+|.|+..+....+..+.+.++++..+||.+|++|||||+|
T Consensus 330 F~rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~~a~~~~~~~v~~d~~~~vqpp~~llD~~pla~~ 409 (581)
T KOG2069|consen 330 FGRVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQSVAKVVPENKVIEDSPTDVQPPLSLLDDPPLAEF 409 (581)
T ss_pred hccccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhcccccccCCcccCCCCCCCccCCCchhcccchHHHH
Confidence 99999999999999999999999999999999999999999999988776654455566677889999999999999999
Q ss_pred HHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHHhhhhHHHHHhhhhcCC
Q 008368 410 INGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPG 489 (568)
Q Consensus 410 ~N~~L~alN~LR~~~p~~l~~~l~~~L~~~l~~~~~~ll~~~~~~~~~~~e~~~f~~~~~~f~~~~vP~v~~c~~~~fp~ 489 (568)
+|+|+.|||+||.|+|++++..++..|+.+++.+.+.|++|+++.+++.+|.++|+++|++|.++++||+.+|++.+|||
T Consensus 410 lN~I~~a~nelr~c~p~al~~dv~~~l~d~l~kv~~~ila~~~~~~~ssse~e~f~~~c~i~~~dv~P~~~rc~~~~fpp 489 (581)
T KOG2069|consen 410 LNGILSALNELRLCAPLALKEDVVNTLDDSLQKVEEEILAFHRTEAFSSSENEAFVRLCRIFKEDVVPYEPRCKIRTFPP 489 (581)
T ss_pred HHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhccccccceeeecCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHH
Q 008368 490 GAALI 494 (568)
Q Consensus 490 ~~~~~ 494 (568)
++.-.
T Consensus 490 a~~~~ 494 (581)
T KOG2069|consen 490 ANKIV 494 (581)
T ss_pred hhhhh
Confidence 88433
No 2
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=100.00 E-value=5e-66 Score=542.65 Aligned_cols=333 Identities=46% Similarity=0.831 Sum_probs=317.6
Q ss_pred HHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHH
Q 008368 29 VSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFI 108 (568)
Q Consensus 29 l~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs 108 (568)
|++|.++++++|.+||+.|..++++++.++|+|+++||+.||++++|++.+...++.++++++.|.+.+|++.+.|+.|.
T Consensus 1 v~~l~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~ 80 (338)
T PF04124_consen 1 VSELTSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFS 80 (338)
T ss_pred CcccccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHH
Q 008368 109 ESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLL 188 (568)
Q Consensus 109 ~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~ 188 (568)
..++.+.++|+.+..++.++++|++|||+|++|++||++|+|+||++++.|++++..+||++|+|++|..||+..++.|+
T Consensus 81 ~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 81 SKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Q 008368 189 SQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQY 268 (568)
Q Consensus 189 ~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lfdivtqY 268 (568)
.+|+++|++|++++.|+|+|+||||++.++|.+||..||.+|+.|+.+.+..++..+++.||+|+||+||+|+|+|++||
T Consensus 161 ~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~~~~~lkr~iei~R~~~fdiitqY 240 (338)
T PF04124_consen 161 SQLINQLRTPLKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSDPYRYLKRYIEIYREHLFDIITQY 240 (338)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCC-----CCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccchhhhcch
Q 008368 269 RAIFADDTSG-----SEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPP 343 (568)
Q Consensus 269 ~aiF~~~~~~-----~~~~~~~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~ 343 (568)
++||+++.+. ...+..++.+.+|+.+.+..|+++|+.+||++ +++.+++|++||||||.||||+|+||+++|.+
T Consensus 241 ~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~-~~~~~~sll~q~~y~~~S~~r~g~DF~~ll~~ 319 (338)
T PF04124_consen 241 RAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRV-DESSRESLLTQLMYFASSFGRVGADFRPLLAP 319 (338)
T ss_pred HHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHhcCccCCChHHHhHH
Confidence 9999955443 11233455666699999999999999999998 78899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 008368 344 LFEEAVLKLFLKNMSTAVE 362 (568)
Q Consensus 344 l~~~~~~~~f~~~~~~a~~ 362 (568)
+|++++.+.|...+++|++
T Consensus 320 ~~~~~~~~~f~~~~~~a~~ 338 (338)
T PF04124_consen 320 LFERAVLNLFETSVSTAIE 338 (338)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 9999999999999988763
No 3
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.4e-32 Score=286.92 Aligned_cols=216 Identities=19% Similarity=0.237 Sum_probs=194.1
Q ss_pred ccCCCCCC--CCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhH
Q 008368 14 VASLLPLA--SLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHL 90 (568)
Q Consensus 14 ~~~~~~l~--s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~ 90 (568)
+.||.+++ +||++.|+.+|.+ ++|++|+++.+.+.++|++||++||+||||||||||+|||||++|+++|..|+++|
T Consensus 22 plsptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eM 101 (636)
T KOG2346|consen 22 PLSPTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEM 101 (636)
T ss_pred CCCccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchh
Confidence 34444444 5799999999999 99999999888888999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHHHHcCChHHHHHHHHHHhhHhhc
Q 008368 91 DSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLD----LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTL 166 (568)
Q Consensus 91 ~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~----LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~ 166 (568)
+.|..+|..|+ .|+.+.+..+.+|+..+..|.+...++. |+++|.++++|++.+.|-+|++.+..|...++.
T Consensus 102 d~L~~~ms~i~----~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~q 177 (636)
T KOG2346|consen 102 DGLEEVMSSIQ----SKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQ 177 (636)
T ss_pred hhHHHHHHHHh----hhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhh
Confidence 99999999999 8899999999999999999988765554 999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHH
Q 008368 167 HPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNI-QLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWL 234 (568)
Q Consensus 167 ~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~~l-~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L 234 (568)
|.+.|.|+.+...+++++..+.++|..+|+.+. +-+.--..+.+|..+|.+ +++++..+|.+-...|
T Consensus 178 Y~~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p-~del~~~lL~~~eqsL 245 (636)
T KOG2346|consen 178 YDGRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVP-VDELKAKLLEKLEQSL 245 (636)
T ss_pred cCCCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCC-hHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999654 222223349999999996 5999999999776553
No 4
>PF15469 Sec5: Exocyst complex component Sec5
Probab=99.81 E-value=2.2e-18 Score=166.33 Aligned_cols=169 Identities=20% Similarity=0.327 Sum_probs=142.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhh------HhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 008368 56 RQMQEVAVGNYRAFIAAADALLAIREEVSSIDKH------LDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHS 129 (568)
Q Consensus 56 ~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~------~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~ 129 (568)
+++|.||++||.+||++.+|+..|+.+|..++.+ ++.|...|..+...+.. ...++++.|.+. ..+.+.-
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~---~~~pll~~~~k~-~~l~~~l 77 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANS---VFKPLLERREKA-DKLRNAL 77 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHH---HHHHHHccHHHH-HHHHHHH
Confidence 5899999999999999999999999999887765 78888888777644332 234455444443 3344443
Q ss_pred HH----HHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChhH
Q 008368 130 TL----LDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHP-KLPIIQALAAEVKQTTQSLLSQLLQKLRS-NIQLPE 203 (568)
Q Consensus 130 ~L----l~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~-~~p~~~~I~~ev~~~~~~l~~~L~~~L~~-~l~L~~ 203 (568)
.+ ..||+||..|..||++|+|+.|++.|.+++.++.++. +.++|+.|..||+.++..+...|.++|.. +....+
T Consensus 78 ~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~ 157 (182)
T PF15469_consen 78 EFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEE 157 (182)
T ss_pred HHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33 3399999999999999999999999999999999987 89999999999999999999999999986 779999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHh
Q 008368 204 CLRIIGYLRRIGVFSEYEMRLQFLRCR 230 (568)
Q Consensus 204 ~~r~V~~LrrL~~~~E~~Lr~~FL~~R 230 (568)
..++|.+|..|++. +...|.||.+|
T Consensus 158 ~~~~i~~Ll~L~~~--~dPi~~~l~~q 182 (182)
T PF15469_consen 158 FLKLIRKLLELNVE--EDPIWYWLESQ 182 (182)
T ss_pred HHHHHHHHHhCCCC--CCHHHHHHHcC
Confidence 99999999999995 58889998765
No 5
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=5e-12 Score=141.29 Aligned_cols=216 Identities=19% Similarity=0.258 Sum_probs=179.1
Q ss_pred CCCCCCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhH-----h
Q 008368 18 LPLASLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHL-----D 91 (568)
Q Consensus 18 ~~l~s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~-----~ 91 (568)
+.-+.|+++-||.+.-+ .+.++|+..-..|+...+.-.+.-..+++.|++.||.+.||+..|++.++..++.. .
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 56678999999999999 99999999999999999999999999999999999999999999999999844433 4
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCC
Q 008368 92 SMITEIPKLTSGCTEFIESAEEILEKRKMNQML---LANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHP 168 (568)
Q Consensus 92 ~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~---L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~ 168 (568)
+|.+.|....+.++.. +++++.++.++..+ |.-.++..-||.||..++.-|+.|+|+-+++.|.+|+.+..+ .
T Consensus 246 ~l~n~i~~~~s~ad~i---F~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~-t 321 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLI---FEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGK-T 321 (934)
T ss_pred HHHHHHHHhhhHHHHH---HHHHHhcccccccHHHHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhcc-c
Confidence 4556665555444332 45566554444443 334456666999999999999999999999999999999877 7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhh
Q 008368 169 KLPIIQALAAEVKQTTQSLLSQLLQKLR-SNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 239 (568)
Q Consensus 169 ~~p~~~~I~~ev~~~~~~l~~~L~~~L~-~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~ 239 (568)
++++|+.+.+||+.+|+.++..|.++|- ++.+..+..|.|.||.-|... ...-|+++.....|+.+.++
T Consensus 322 ~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~--~dP~wq~I~~q~k~i~~L~~ 391 (934)
T KOG2347|consen 322 EVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPE--SDPVWQCIGVQNKRILGLLE 391 (934)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcc--cCchhhhccccchHHHhhhh
Confidence 8999999999999999999999999987 599999999999999988875 57788888866666555443
No 6
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.16 E-value=2.4e-10 Score=96.99 Aligned_cols=82 Identities=21% Similarity=0.424 Sum_probs=77.1
Q ss_pred CCCCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 20 LASLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 20 l~s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
-.+||++.|+..+++ .+++++.+-...|..+++..+.+||.+||+||+.||.++++|..|+.++..+...+..|...+.
T Consensus 3 ~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 3 SENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred CCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999888 9999999999999999999999999999999999999999999999999999999999888887
Q ss_pred hhh
Q 008368 99 KLT 101 (568)
Q Consensus 99 ~i~ 101 (568)
.++
T Consensus 83 ~l~ 85 (87)
T PF08700_consen 83 SLQ 85 (87)
T ss_pred Hhh
Confidence 765
No 7
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.73 E-value=3.2e-05 Score=80.27 Aligned_cols=171 Identities=17% Similarity=0.234 Sum_probs=141.0
Q ss_pred CCChHHHH-HHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 22 SLSQQPYV-SELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 22 s~~~~~Yl-~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
+||+..|. .++.. .+.+++.++.+.|......+...+...+-+||+.|.++-..++.+..++...-..+.++...|.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888774 56666 4677888888999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHH
Q 008368 99 KLTSGCTEFIESAEEIL---EKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQA 175 (568)
Q Consensus 99 ~i~~~~~~fs~~~~~il---~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~ 175 (568)
.+.+... ...-.++ .+|+....++.....+..+.+.=..++..+..|+|..|+++...++.++..+.+...++.
T Consensus 92 ~~~~~~~---~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~ 168 (291)
T PF10475_consen 92 SADENLT---KSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRH 168 (291)
T ss_pred HHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 8875432 2223333 333333345556677777999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 008368 176 LAAEVKQTTQSLLSQLLQKL 195 (568)
Q Consensus 176 I~~ev~~~~~~l~~~L~~~L 195 (568)
+..++++....+.+.|-..|
T Consensus 169 L~~~L~e~~~~i~~~ld~~l 188 (291)
T PF10475_consen 169 LSSQLQETLELIEEQLDSDL 188 (291)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 99988888777777766665
No 8
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.72 E-value=6.2e-05 Score=81.06 Aligned_cols=169 Identities=17% Similarity=0.258 Sum_probs=120.9
Q ss_pred CCCChHHHHHHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 21 ASLSQQPYVSELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 21 ~s~~~~~Yl~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
.+||+-.|++++.. .||.+|-.--..++.+++.++.++...+-+.-. .-..-...+......+..|...|.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~-------~~~~~~~~l~~a~~~i~~L~~~i~ 74 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSS-------SGQDAEEDLEEAQEAIQELFEKIS 74 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------ccccccccHHHHHHHHHHHHHHHH
Confidence 57999999999888 999999888889999999999999988865331 112333444455555556666666
Q ss_pred hhhhhhhHHHHHHHHHHHHHH------HH-HHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHh---hcCC
Q 008368 99 KLTSGCTEFIESAEEILEKRK------MN-QMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLS---TLHP 168 (568)
Q Consensus 99 ~i~~~~~~fs~~~~~il~~rr------~~-~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll---~~~~ 168 (568)
.+.+.++.--..+.++-...+ +| .....-..+|.-|...=.-|+..+..+.|.|+..++.-+..+. +.|.
T Consensus 75 ~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yk 154 (383)
T PF04100_consen 75 EIKSKAEESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYK 154 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHccc
Confidence 666555443333333332211 11 1222333555557777788899999999999999999998886 6789
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008368 169 KLPIIQALAAEVKQTTQSLLSQLLQKLR 196 (568)
Q Consensus 169 ~~p~~~~I~~ev~~~~~~l~~~L~~~L~ 196 (568)
++|-|+.+..++...-..+..++...+.
T Consensus 155 si~~I~~L~~~i~~l~~~L~~qI~~df~ 182 (383)
T PF04100_consen 155 SIPQIAELSKRIDQLQNELKEQIFEDFE 182 (383)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888888777543
No 9
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.58 E-value=0.00031 Score=78.11 Aligned_cols=201 Identities=15% Similarity=0.212 Sum_probs=135.0
Q ss_pred HHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHH
Q 008368 30 SELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFI 108 (568)
Q Consensus 30 ~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs 108 (568)
+.|.. .|.+++..=...++.+++.-.+++.++|=+-|+-.|+|+|||+.|++.-+. |.+.|..+...|++..
T Consensus 11 d~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~-------L~~~I~~t~~ncrsL~ 83 (863)
T KOG2033|consen 11 DTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADK-------LASDIANTRVNCRSLH 83 (863)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhhcc
Confidence 44555 788888876777889999999999999999999999999999999876555 4555566666666655
Q ss_pred HHHH---HHHHHHHHHHHHHHhHH-HHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhh----cCCCChHHHHH---H
Q 008368 109 ESAE---EILEKRKMNQMLLANHS-TLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLST----LHPKLPIIQAL---A 177 (568)
Q Consensus 109 ~~~~---~il~~rr~~~~~L~~~~-~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~----~~~~~p~~~~I---~ 177 (568)
.++. ..++++......+.+.. ++--|+++|+++..|..++.|=+|..+|..++-+.+ ..+..++.+.. .
T Consensus 84 a~svA~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~nfP~l~ 163 (863)
T KOG2033|consen 84 ANSVAKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLKNFPALT 163 (863)
T ss_pred cccccCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHhhcHHHH
Confidence 3221 23444443444444443 444499999999999999999999999998877654 23333333221 1
Q ss_pred HHHHHHH---HHHHHHHHHHh-ccCCC---hhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhh
Q 008368 178 AEVKQTT---QSLLSQLLQKL-RSNIQ---LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILED 240 (568)
Q Consensus 178 ~ev~~~~---~~l~~~L~~~L-~~~l~---L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~ 240 (568)
.++.... .++..+-...| +.++. ..+|+..|-+|-..+. +++=..||..|..|+...|.+
T Consensus 164 ~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdp---sqvLelFL~~Rk~~il~lLn~ 230 (863)
T KOG2033|consen 164 NQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDP---SQVLELFLEKRKEHILHLLND 230 (863)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCH---HHHHHHHHHHHHHHHHHHHhc
Confidence 1221111 12222222222 23332 3456666666665554 788899999999999999987
No 10
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.034 Score=62.82 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=124.3
Q ss_pred CCCChHHHHHHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 21 ASLSQQPYVSELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 21 ~s~~~~~Yl~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
..|..=.|+..|.- .||.++-.=-+.++.+++++|.++++.|..+-| +-.+++.++......+..|...|.
T Consensus 17 ~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N-------~g~~~~e~l~da~~ai~eL~~~i~ 89 (793)
T KOG2180|consen 17 PEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQEN-------SGTRGKENLADAQAAIEELFQKIQ 89 (793)
T ss_pred cchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-------ccchhhhhHHHHHHHHHHHHHHHH
Confidence 45667788888776 688888777777888999999999999987654 455666677777777777777887
Q ss_pred hhhhhhhHHHHHHHHHHHHH------HHHH-HHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHh---hcCC
Q 008368 99 KLTSGCTEFIESAEEILEKR------KMNQ-MLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLS---TLHP 168 (568)
Q Consensus 99 ~i~~~~~~fs~~~~~il~~r------r~~~-~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll---~~~~ 168 (568)
.+++.+++--..+.++-.+. ++|. ..+.-.++|.-|..-=.-|++.++++.|.||+..+.-+..++ .+|.
T Consensus 90 eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk 169 (793)
T KOG2180|consen 90 EIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYK 169 (793)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhc
Confidence 77766654333344443221 1121 112233444456666678899999999999999999877765 6799
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008368 169 KLPIIQALAAEVKQTTQSLLSQLLQKLR 196 (568)
Q Consensus 169 ~~p~~~~I~~ev~~~~~~l~~~L~~~L~ 196 (568)
++|-|..+...++..-..+..++.+.+.
T Consensus 170 ~v~~I~~Ls~si~~~k~~l~~qi~~df~ 197 (793)
T KOG2180|consen 170 SVDEIANLSESIDKLKKSLLSQIFQDFK 197 (793)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988887775
No 11
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0035 Score=71.82 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=134.2
Q ss_pred HHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHH
Q 008368 29 VSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEF 107 (568)
Q Consensus 29 l~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~f 107 (568)
+..|.. -+-+.+..|.++|...-+.-+..+|+||.++|.-|-+.-.+.+++.+.+....+.+-.+-+++..-.+.-+.-
T Consensus 36 i~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~ 115 (982)
T KOG3691|consen 36 IRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTR 115 (982)
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444 6777888899999999999999999999999999999999999999999999999988888885544333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHh-hcCCCChHHHHHHHHHHHHHHH
Q 008368 108 IESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLS-TLHPKLPIIQALAAEVKQTTQS 186 (568)
Q Consensus 108 s~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll-~~~~~~p~~~~I~~ev~~~~~~ 186 (568)
.++....+.+--+...+++-..+|-++.++|+.+..||+..+|-.|-++...+..++ .+...+.....+..|.+.....
T Consensus 116 rdeLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele~~~~~ 195 (982)
T KOG3691|consen 116 RDELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELEGLLSH 195 (982)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHHHHHHH
Confidence 344455554433334444444667779999999999999999999999999987665 4566788889999999999998
Q ss_pred HHHHHHHHhcc
Q 008368 187 LLSQLLQKLRS 197 (568)
Q Consensus 187 l~~~L~~~L~~ 197 (568)
|...|..+|..
T Consensus 196 L~~~L~eELv~ 206 (982)
T KOG3691|consen 196 LEDILIEELVS 206 (982)
T ss_pred HHHHHHHHHHH
Confidence 88888888864
No 12
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.48 E-value=0.0024 Score=58.61 Aligned_cols=82 Identities=11% Similarity=0.263 Sum_probs=72.5
Q ss_pred CCCChHHHHHHhhc------CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHH
Q 008368 21 ASLSQQPYVSELLS------FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMI 94 (568)
Q Consensus 21 ~s~~~~~Yl~~L~s------~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~ 94 (568)
++||+..|-+.++. .+-.++...-.+|...++.++++|+++|.+||..++.-+..+.....-++.+..+++.|.
T Consensus 6 ~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~ 85 (132)
T PF10392_consen 6 PDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQ 85 (132)
T ss_pred CCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999887 334455668889999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhh
Q 008368 95 TEIPKLTS 102 (568)
Q Consensus 95 ~~l~~i~~ 102 (568)
.++.+|..
T Consensus 86 ~s~~RL~~ 93 (132)
T PF10392_consen 86 SSYERLRS 93 (132)
T ss_pred HHHHHHHH
Confidence 88877763
No 13
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.015 Score=66.18 Aligned_cols=335 Identities=18% Similarity=0.181 Sum_probs=180.2
Q ss_pred HHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcc--C--CChhHHH
Q 008368 130 TLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRS--N--IQLPECL 205 (568)
Q Consensus 130 ~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~--~--l~L~~~~ 205 (568)
..+|.-++|+.+..||+.+++..+..... +..+.+..+..-.+...++.+--.+.+.|+..++. + ..+..+.
T Consensus 283 ~~~W~~~~~e~~~~~v~~~~~~~s~~~~~----l~~~~~~~~~~~~~~~~Lq~~~lfl~~~ll~~~~~~~~le~~~r~~~ 358 (673)
T KOG2215|consen 283 EVLWLEELVELFKLLVAHNAFKTSLEAIH----LRAASACLQLALTICKPLQMRELFLLNLLLKIFSVERALERDFRVAQ 358 (673)
T ss_pred hhchhhhhhHHHHHHHHhccchhhHHHHH----hhhcccchhhhhhhhhhhhHhHhhhhhHHHHHhhhhhhhhhhHHHHh
Confidence 45668889999999999999887776532 22222223333444444444444444444444441 1 1233333
Q ss_pred HHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCCc
Q 008368 206 RIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDG 285 (568)
Q Consensus 206 r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lfdivtqY~aiF~~~~~~~~~~~~~ 285 (568)
+....|..++.. ......||..|...+ ...+........+ ...++..|...+.++++ |.. +
T Consensus 359 ~~~~~l~el~~~--~~at~~~l~~~s~~~-~a~~~~~~~~~~r-~~~~~~d~~~~l~~~~~-----~e~----------~ 419 (673)
T KOG2215|consen 359 RRHHQLVELGRW--SRSTKRLLFKHSESL-SAYRCRDTDEASR-FLQVVQDFSEDLCDILK-----FEQ----------G 419 (673)
T ss_pred hhHHHHHHhhhh--cccchHHHHHHHHHH-HHHHhhhhhhhHH-HHHHHHHHHHHHHHHhh-----hcc----------c
Confidence 333333333332 122333444444444 2222222222222 33344444444444433 221 4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCCC--CC---CChhHHHHHHHHHHhhhhhcccchhhhcchHHHHHHHHHHHHHHHHH
Q 008368 286 GLLFSWAMHQITAHLKTLKVMLPKIT--EG---VSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTA 360 (568)
Q Consensus 286 s~l~~w~~~~v~~fl~~L~~~L~~i~--~~---~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~l~~~~~~~~f~~~~~~a 360 (568)
+.++.|+.+-+..+++++-+++++-. .+ +.-..++.+.+.-+..|+-+|+|+...+..+++..+... ..+..-
T Consensus 420 s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s--~~l~~~ 497 (673)
T KOG2215|consen 420 SKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVAEIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESS--QLLEGF 497 (673)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHh--hhhhcc
Confidence 56889999999999999999887522 11 122334555555579999999999999988888877744 223334
Q ss_pred HHHHHHhhhc-----cccccCCCCCCCCCC---CCCCCCCC---------CCCCcccccchHHHHHHHHHHHHHHhhccC
Q 008368 361 VENFQLVLDS-----HRWVPLPAVGYPAHS---VGEESQED---------VTPPSYLMEHPPLAVFINGVSAAMNELRPC 423 (568)
Q Consensus 361 ~~~f~~~l~~-----~~w~~~~~~~~~s~~---~~~~~~~~---------~~pP~~L~~~~pLa~~~N~~L~alN~LR~~ 423 (568)
.+.+.+.++. ..|++.+..+....+ -.....|. ..--.++.--.....+.+.++..+...-.+
T Consensus 498 ~E~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d~~~nl~~q~v~~~~~~~~~le~d~~l 577 (673)
T KOG2215|consen 498 KEGIADALDNRNREEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGDGWLNLSSQLVVSKKQLMHLLEKDLPL 577 (673)
T ss_pred hhhHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccceEEehhHHHHHHHHHHHHHHHhhhcc
Confidence 4444444433 348776544322111 00000000 000111211112266678888888777777
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHhhhhhhhccccchHHHHHHHHHHHH-hhhhHHHHHhhhhcCCchhHH
Q 008368 424 APLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIE-VAYPHCATCFGRCYPGGAALI 494 (568)
Q Consensus 424 ~p~~l~~~l~~~L~~~l~~~~~~ll~~~~~~~~~~~e~~~f~~~~~~f~~-~~vP~v~~c~~~~fp~~~~~~ 494 (568)
.-.++...+.+.|.+.+-.+.+++- +...+..++. +..+...|+- ..+|++-..++.++++.+..+
T Consensus 578 ~k~~l~~~lLe~L~e~~~~~lQ~l~--~~~~~~~dP~---~~~~~~q~i~~m~~~v~~~~~~~~~~~~~~~i 644 (673)
T KOG2215|consen 578 GKLELAFQLLELLAETLSIALQSLW--LKIDDEADPN---IFAGIRQLILDMELPVCIAAFDRIEGELGSKI 644 (673)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH--hhhccccCcc---hHHHHHHHHHHhhhhhhHHHhhhhhHHhhhhh
Confidence 7778887777777766655555554 3334434443 4444555533 467888888888887766444
No 14
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.37 E-value=0.00011 Score=67.39 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 20 LASLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 20 l~s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
-.+|+++.||.+..+ .||++|.++-..+ .+.++++|-+|+.+||.-|++-...+..+...+..+...+..+...+.
T Consensus 10 ~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~---~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~~~~v~ 86 (133)
T PF06148_consen 10 KPDFDVDEFLSSNRRYVSLEDLRKDLRSY---SKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQFREEVE 86 (133)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHccCCCCHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999777 9999999886555 678899999999999999999999999998888888888888877777
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 008368 99 KLTSGCTEFIESAEEILEKRKMNQMLL 125 (568)
Q Consensus 99 ~i~~~~~~fs~~~~~il~~rr~~~~~L 125 (568)
.+.+....-...+...+++|+......
T Consensus 87 ~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 87 SVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp HHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555555556677777766655443
No 15
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=97.35 E-value=0.33 Score=57.13 Aligned_cols=141 Identities=13% Similarity=0.186 Sum_probs=96.2
Q ss_pred HhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcc---CCChhHHHHHHHH
Q 008368 134 LLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRS---NIQLPECLRIIGY 210 (568)
Q Consensus 134 LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~---~l~L~~~~r~V~~ 210 (568)
.-.+=..++..+..|+|..+-+-....++-+.-..++|=+.+-...++.--.++-..+..+|-. ...+.+|.+.++.
T Consensus 130 w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~i 209 (766)
T PF10191_consen 130 WSTLSAEVDDLFESGDIAKIADRLAEMQRSLAVLQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKI 209 (766)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHH
Confidence 4456667788889999999988888888877777777766554444444444444444444432 3468999999999
Q ss_pred hhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccC----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 008368 211 LRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKN----AYEYLKGMINCHRMHLFDVVNQYRAIFADDT 276 (568)
Q Consensus 211 LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~----~~~yl~r~ie~~R~~lfdivtqY~aiF~~~~ 276 (568)
+.++|.. ++++..|-++|..-+...=......+ -..+|..|.+..-..+-.=+.--..+|+++.
T Consensus 210 f~~i~R~--~~l~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~ 277 (766)
T PF10191_consen 210 FSSIGRE--PQLEQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDES 277 (766)
T ss_pred HHHcCCH--HHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999996 79999999999988877655444333 3445555555444444444445578999874
No 16
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=1.4 Score=50.93 Aligned_cols=118 Identities=17% Similarity=0.254 Sum_probs=90.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 008368 43 EPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQ 122 (568)
Q Consensus 43 Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~ 122 (568)
=-+.|..-+++-+.+++.++..||.-||++-+-+.+++.+...+.+.+.++...+.... ......-+++..-|....
T Consensus 49 ~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g---~eLiv~~e~lv~~r~~~r 125 (800)
T KOG2176|consen 49 VMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESG---KELIVKKEDLVRCRTQSR 125 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999999999988877665444 333333344433333322
Q ss_pred ---HHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhH
Q 008368 123 ---MLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKL 163 (568)
Q Consensus 123 ---~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~l 163 (568)
.........+.+||+=..++..+.+|.|=.|++........
T Consensus 126 nit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~ 169 (800)
T KOG2176|consen 126 NITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKV 169 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 22333455667999999999999999999999999887665
No 17
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.30 E-value=0.096 Score=48.74 Aligned_cols=122 Identities=13% Similarity=0.200 Sum_probs=85.3
Q ss_pred CCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhh
Q 008368 22 SLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKL 100 (568)
Q Consensus 22 s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i 100 (568)
+|++-.+.=.++. .|+. +..+-..+....+.++..++.+|-+||..|=++-.+...|...+..-...+..+-+.+..-
T Consensus 20 ~~~pv~~al~~ld~ss~g-~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~a 98 (142)
T PF04048_consen 20 DFNPVELALSLLDDSSVG-RAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEA 98 (142)
T ss_pred CCcHHHHHHHhcCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555556666 5543 5566777788899999999999999999999999999999999999999888887777544
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Q 008368 101 TSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTC 144 (568)
Q Consensus 101 ~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~c 144 (568)
...-..-.......+.+.......+.-.+.+-+|..+|..+++|
T Consensus 99 k~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 99 KSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 32222222233444444444444444445666688889888753
No 18
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=94.98 E-value=9.9 Score=44.54 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcc---CCChhHHHHHHHHhhhcCCCChHHHHHHHH
Q 008368 151 DEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRS---NIQLPECLRIIGYLRRIGVFSEYEMRLQFL 227 (568)
Q Consensus 151 eeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~---~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL 227 (568)
.+|..+...-..+.+..++.|.+..+...++.....+.+.|++++.. .-....+.+.+..|..++.. ...-..|+
T Consensus 75 ~~~A~il~~L~~ls~~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d~~~M~~~A~vL~~fngg--~~~i~~fi 152 (710)
T PF07393_consen 75 EEAAKILRNLLRLSKELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGDYERMKEFAKVLLEFNGG--SSCIDFFI 152 (710)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--cHHHHHHH
Confidence 67777777777788887788999999999999999999999999973 23466777778888888875 47777888
Q ss_pred HHhHHHH
Q 008368 228 RCREAWL 234 (568)
Q Consensus 228 ~~R~~~L 234 (568)
..+...+
T Consensus 153 ~k~~~f~ 159 (710)
T PF07393_consen 153 NKHEFFI 159 (710)
T ss_pred HhChhhh
Confidence 8776665
No 19
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.67 E-value=8.3 Score=45.46 Aligned_cols=130 Identities=14% Similarity=0.143 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Q 008368 66 YRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCV 145 (568)
Q Consensus 66 Y~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI 145 (568)
-.+|..|-.....+...+..--+++..|.++|..++..|-.=+..+.+.-..|+....+++....+..+.+--..+...+
T Consensus 267 SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll 346 (951)
T KOG2115|consen 267 SDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTVQLLL 346 (951)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 46788999999999999988888999999999999877654444444444444444444555556666777777888889
Q ss_pred HcCChHHHHHHHHHHhhHhh--cCCCChHHHHHHHHHHHHHHHHHHHHHHHh
Q 008368 146 RNGNYDEALDLEAYVCKLST--LHPKLPIIQALAAEVKQTTQSLLSQLLQKL 195 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~--~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L 195 (568)
..++|..|+++..-...+++ ..-++++|+.+..+..+..+.+-..+.+++
T Consensus 347 ~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t~eF 398 (951)
T KOG2115|consen 347 STQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLTREF 398 (951)
T ss_pred hcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998886 356789999999987776655444444444
No 20
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=94.26 E-value=13 Score=42.66 Aligned_cols=161 Identities=19% Similarity=0.268 Sum_probs=111.7
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhh-hhhh-hhhhhHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITE-IPKL-TSGCTEFIESAE 112 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~-l~~i-~~~~~~fs~~~~ 112 (568)
.+.++|...-.+|.+++..+..++++.+.+||..|+......+.+-.....+..+++.+.+. ++.- ......-.....
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~ 86 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQ 86 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 67788888888899999999999999999999999999999999999999999999666554 4321 111111111122
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcC-----CCChHHHHHHHHHHHHHHHH
Q 008368 113 EILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLH-----PKLPIIQALAAEVKQTTQSL 187 (568)
Q Consensus 113 ~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~-----~~~p~~~~I~~ev~~~~~~l 187 (568)
.+-++-+.+...+.-..+|.++=+.=..++..+.+|+|-.|.+....++..+..- .+..+++.+..|.......+
T Consensus 87 ~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L 166 (593)
T PF06248_consen 87 ELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENL 166 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHH
Confidence 2222323332333222333332222256667889999999999999999988652 24578888888888887777
Q ss_pred HHHHHHHh
Q 008368 188 LSQLLQKL 195 (568)
Q Consensus 188 ~~~L~~~L 195 (568)
...|....
T Consensus 167 ~~~L~~~w 174 (593)
T PF06248_consen 167 QYQLSEEW 174 (593)
T ss_pred HHHHHHHH
Confidence 77775444
No 21
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=18 Score=40.63 Aligned_cols=78 Identities=19% Similarity=0.385 Sum_probs=65.8
Q ss_pred CCCChHHHHHHhhc-CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhh
Q 008368 21 ASLSQQPYVSELLS-FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPK 99 (568)
Q Consensus 21 ~s~~~~~Yl~~L~s-~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~ 99 (568)
.+||.+.|++...+ .+|+.|..+ |+.-.+.+...|-+|..+.|.-|+.-...+-.|-.++..|+..+..|.+.+..
T Consensus 31 edFdve~f~s~~R~~v~letLrdd---Lrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlreei~s 107 (705)
T KOG2307|consen 31 EDFDVERFMSLARQKVDLETLRDD---LRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLREEIKS 107 (705)
T ss_pred ccCCHHHHHHHHhccCCHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHHHHHH
Confidence 36899999999999 999999865 45568899999999999999999998888888888888888887777777665
Q ss_pred hh
Q 008368 100 LT 101 (568)
Q Consensus 100 i~ 101 (568)
+.
T Consensus 108 ~r 109 (705)
T KOG2307|consen 108 TR 109 (705)
T ss_pred HH
Confidence 54
No 22
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=92.79 E-value=13 Score=41.82 Aligned_cols=160 Identities=19% Similarity=0.232 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH
Q 008368 66 YRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCV 145 (568)
Q Consensus 66 Y~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI 145 (568)
|..+-++-+.+..|..-+..+.+++..+...|..+++. |...+..++.|+.....| ..+.+=+-+|..|-..|
T Consensus 20 h~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~----S~~l~~~L~Nrk~~~~~L---~~~i~~i~ipP~lI~~I 92 (508)
T PF04129_consen 20 HNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQER----SSSLNVKLKNRKAVEEKL---SPFIDDIVIPPDLIRSI 92 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHH---HHHHHHHcCCHHHHHhH
Confidence 33344555666777777777777777777777777744 444566677777766555 56666556888888888
Q ss_pred HcCChHH-----HHHHHHHHhhHhh--cCCCChHHHHHHHHHH-------HHHHHHHHHHHHHhccCCC--------hhH
Q 008368 146 RNGNYDE-----ALDLEAYVCKLST--LHPKLPIIQALAAEVK-------QTTQSLLSQLLQKLRSNIQ--------LPE 203 (568)
Q Consensus 146 ~~~~Yee-----Al~l~~~~~~ll~--~~~~~p~~~~I~~ev~-------~~~~~l~~~L~~~L~~~l~--------L~~ 203 (568)
-+|.-++ .++++.+-....+ .+.+.++++++..+.+ ++++...-.-+..||.+.. |-.
T Consensus 93 ~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~~LLk 172 (508)
T PF04129_consen 93 CEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQVLLK 172 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHh
Confidence 8776655 4555555444433 2455666666666554 3333333344555664431 222
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHhHH
Q 008368 204 CLRIIGYLRRIGVFSEYEMRLQFLRCREA 232 (568)
Q Consensus 204 ~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~ 232 (568)
......+|.+=......++|..|...-..
T Consensus 173 ~~~~~~FL~~~~~~~a~El~~~Yv~tM~~ 201 (508)
T PF04129_consen 173 YKELFQFLKKHSPELAKELRQAYVETMSW 201 (508)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444444433334555555544433
No 23
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=1.9 Score=48.27 Aligned_cols=243 Identities=11% Similarity=-0.001 Sum_probs=133.6
Q ss_pred cCCCCCCCCChHHHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHH
Q 008368 15 ASLLPLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMI 94 (568)
Q Consensus 15 ~~~~~l~s~~~~~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~ 94 (568)
+.+..+.+++-+.|-++=.- |..+...+..+.+.+...--.--.+=-..+-+.......++.++...-.++-.|.
T Consensus 23 ~~v~~l~~~~~e~l~ke~~~-----La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~ 97 (581)
T KOG2069|consen 23 AYVRELTTKPLEELRKEKAL-----LAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELT 97 (581)
T ss_pred HHHHHHcCCcHHHHHhhHHH-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhh
Confidence 44566777777777665211 3334444444444443333222222222233344555566666666666666666
Q ss_pred hhhhhhhhhhhHHHHHH--HHHHHHHHHHHHH-------HHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHh-hHh
Q 008368 95 TEIPKLTSGCTEFIESA--EEILEKRKMNQML-------LANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVC-KLS 164 (568)
Q Consensus 95 ~~l~~i~~~~~~fs~~~--~~il~~rr~~~~~-------L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~-~ll 164 (568)
...-++...+...++.- +.+.-.+.....- +..+-+.....|.++++..|.|.+++..++..+.... .+.
T Consensus 98 s~~~~f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~i~~~v~ 177 (581)
T KOG2069|consen 98 SPCKRFQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQEIATEVE 177 (581)
T ss_pred hHHHHHHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 66666664433322211 1111111111111 2233344448899999999999999999986655432 111
Q ss_pred hcCCCChHHHHHHHHHHHHHHH---HHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhh
Q 008368 165 TLHPKLPIIQALAAEVKQTTQS---LLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDL 241 (568)
Q Consensus 165 ~~~~~~p~~~~I~~ev~~~~~~---l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l 241 (568)
..+..+..++.+.++. |.+.|+-.........-+-.. ..++. -+.++.+|..+..||.+.....
T Consensus 178 ------~tv~~ll~qL~~~l~~pl~l~~cirvv~ylr~~~~~t~~~-LRl~f------l~~rd~~l~k~l~~I~~~~~~~ 244 (581)
T KOG2069|consen 178 ------QTVQKLLEQLIQQLRTPLQLPECIRVVGYLRRMAVLTENQ-LRLKF------LQARDAWLEKILEDISTNNPYL 244 (581)
T ss_pred ------HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhh-HHHHH------HHHHHHHHHHHHHhcccccHHH
Confidence 2244444444444333 333333322222222222222 33343 3778899999999998876665
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 008368 242 DQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDT 276 (568)
Q Consensus 242 ~~~~~~~yl~r~ie~~R~~lfdivtqY~aiF~~~~ 276 (568)
--..+...++.-+.-.+.+.++|+.+|..+ .+..
T Consensus 245 ~l~~~i~~~r~~lf~~i~qY~aifpe~~~~-~n~~ 278 (581)
T KOG2069|consen 245 YLKKTIEIIRVNLFDIITQYLAVFPEDEGD-LNPN 278 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCC-CCcc
Confidence 555677788888888889999999999999 5554
No 24
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=92.14 E-value=18 Score=38.36 Aligned_cols=238 Identities=17% Similarity=0.162 Sum_probs=128.4
Q ss_pred CCCCCChHHHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 19 PLASLSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 19 ~l~s~~~~~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
.|++.+.+.|.+ -...|..+...+..+++.+..+......+|..........+..+.+.++.+.+++..|.+...
T Consensus 3 ~l~s~~l~~L~~-----Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~ 77 (338)
T PF04124_consen 3 ELTSLSLESLFS-----EPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQ 77 (338)
T ss_pred ccccCCHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665 455666677777778888888777777777777777777777777777776666666665555
Q ss_pred hhhhhhhHHHHHH---HHHHHH--------------------------------------------------HHHHHHHH
Q 008368 99 KLTSGCTEFIESA---EEILEK--------------------------------------------------RKMNQMLL 125 (568)
Q Consensus 99 ~i~~~~~~fs~~~---~~il~~--------------------------------------------------rr~~~~~L 125 (568)
.+...++.....- ..++.. ........
T Consensus 78 ~f~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~ 157 (338)
T PF04124_consen 78 RFSSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQ 157 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 5444333222210 000000 01111222
Q ss_pred HhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCC--hHHHHHHHHHHHHHHHHHHHHHHHhccCCChhH
Q 008368 126 ANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKL--PIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPE 203 (568)
Q Consensus 126 ~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~--p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L~~ 203 (568)
.....|+..|..|-.+.+||+-..|-..+..|.+.. +...+... ..++.+..++.. .+...+++++-+- --..
T Consensus 158 ~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~~-Lr~~fl~~r~~~l~~~l~~i~~---~~~~~~lkr~iei-~R~~ 232 (338)
T PF04124_consen 158 QMLSQLINQLRTPLKLPACIKTVGYLRRLPVLTESE-LRLKFLQSRDSWLQSVLEEIDK---SDPYRYLKRYIEI-YREH 232 (338)
T ss_pred HHHHHHHHHHcCcccHHHHHHHHHHHHHhccccchH-HHHHHHHHHHHHHhhhHHHHhh---hhHHHHHHHHHHH-HHHH
Confidence 234566779999999999999999999998887765 33222211 122222222221 1111222221100 0011
Q ss_pred HHHHHHHhhhcCCCC--------------hHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008368 204 CLRIIGYLRRIGVFS--------------EYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYR 269 (568)
Q Consensus 204 ~~r~V~~LrrL~~~~--------------E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lfdivtqY~ 269 (568)
...+|..-+-+..+. ...+.- |...+..-+- .....|+.+++++.+++++.-+.-|-
T Consensus 233 ~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~s-w~~~~v~~~l--------~~L~~~L~~~~~~~~~sll~q~~y~~ 303 (338)
T PF04124_consen 233 LFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFS-WALHRVSSFL--------ETLEMYLPRVDESSRESLLTQLMYFA 303 (338)
T ss_pred HHHHHHHHHHHcCCccccccccccccccChhHHHH-HHHHHHHHHH--------HHHHHHhhccccchHHHHHHHHHHHH
Confidence 222232222222210 011111 2222221111 12356888999999999999999888
Q ss_pred HhCCCC
Q 008368 270 AIFADD 275 (568)
Q Consensus 270 aiF~~~ 275 (568)
.-|..-
T Consensus 304 ~S~~r~ 309 (338)
T PF04124_consen 304 SSFGRV 309 (338)
T ss_pred HhcCcc
Confidence 888764
No 25
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.69 E-value=46 Score=38.63 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=137.5
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI 114 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i 114 (568)
..+.++.+.-+.++.|.+++++++-.|+-+.-..==..-..+..+..++..++.....|.+.+......+++.+..+..+
T Consensus 31 t~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe~Vs~kVr~l 110 (773)
T KOG0412|consen 31 TDISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAETVSGKVRAL 110 (773)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888888888888888888888888877632221122277888999999999999999999988887888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCC-------CCh--HHHHHHHHHHHHHH
Q 008368 115 LEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHP-------KLP--IIQALAAEVKQTTQ 185 (568)
Q Consensus 115 l~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~-------~~p--~~~~I~~ev~~~~~ 185 (568)
=.+|.+....|...+.+.++=.--+.+++.++..+|+.|-....+...+-+++- ..| .+..=..-.++..+
T Consensus 111 Dla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~L~~a~e 190 (773)
T KOG0412|consen 111 DLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYETLKEAKE 190 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHHHHHHHH
Confidence 788888888899999999998888999999999999999887666555432211 111 12222223334444
Q ss_pred HHHHHHHHHhcc---CCChhHHHHHHHHhhhcCCCChH-HHHHHHHH
Q 008368 186 SLLSQLLQKLRS---NIQLPECLRIIGYLRRIGVFSEY-EMRLQFLR 228 (568)
Q Consensus 186 ~l~~~L~~~L~~---~l~L~~~~r~V~~LrrL~~~~E~-~Lr~~FL~ 228 (568)
++..-+.+++.. ...+++.-|.+....=+|...|. ++-+.||.
T Consensus 191 ~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc 237 (773)
T KOG0412|consen 191 RLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLC 237 (773)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHH
Confidence 455555556653 44788888888877777776532 33344444
No 26
>KOG3745 consensus Exocyst subunit - Sec10p [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=72 Score=37.41 Aligned_cols=291 Identities=11% Similarity=0.110 Sum_probs=146.9
Q ss_pred HHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhH
Q 008368 27 PYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTE 106 (568)
Q Consensus 27 ~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~ 106 (568)
.|+-+.....+.+|..=.++.+..++.+..+|++.-.+.-.+...-.+-......-+..+++.+. ..+.....
T Consensus 52 ~~l~~~f~~~~~eL~~L~e~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~-------~v~~~vv~ 124 (763)
T KOG3745|consen 52 KGLIKTFENEIKELTLLDERYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIF-------PVSYKVVH 124 (763)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccc-------cccccccc
Confidence 44555555666777532236668888888888865544444433333333333333333333333 33322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc-hHHHHHHHHcCChH---HHHHHHHHHhhHhhcCCCChHHHHHHHHHHH
Q 008368 107 FIESAEEILEKRKMNQMLLANHSTLLDLLEI-PQLMDTCVRNGNYD---EALDLEAYVCKLSTLHPKLPIIQALAAEVKQ 182 (568)
Q Consensus 107 fs~~~~~il~~rr~~~~~L~~~~~Ll~LlEL-P~lL~~cI~~~~Ye---eAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~ 182 (568)
.-+....+...|++......=...-.+++.. |+-+..-|+...++ +|.+...+.-.+...+|.. -+...++.++.
T Consensus 125 lgq~Le~v~~~r~r~~~a~~lir~~~eF~s~~~~~i~s~i~~~~~~k~leaa~~~~kLl~isnel~~~-~f~~tka~I~k 203 (763)
T KOG3745|consen 125 LGQQLETVIKPRSRAVDAQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLISNELPYG-KFSETKARIEK 203 (763)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCchhHHHHHhcChhhhHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHH
Confidence 3334455556665554443333334445555 45666666665554 4444444444444555544 57888888888
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH
Q 008368 183 TTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLF 262 (568)
Q Consensus 183 ~~~~l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lf 262 (568)
....|-..|+..+.....=+.-.+...+=.=|..|. . .-..|+.|-..+++.. ..+.-..|+..++.-.+..+.
T Consensus 204 ~~~~lE~~lleeF~~~~R~~n~~~m~~~a~iL~~F~-G-~v~~y~n~~d~fid~~----~~~~~~~fi~~~~~di~~D~~ 277 (763)
T KOG3745|consen 204 KYEVLEQNLLEEFNSAQREENIKKMAEFAKILSEFK-G-VVRMYLNCVDDFIDSD----EFQPEQPFISNILQDIFNDIL 277 (763)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhc-c-hHHHHHHhHHHHHHHh----hccchhhHHHHHHHHHHHHHH
Confidence 888888888888764221111111111111123332 1 3345888888888761 111112344433333333333
Q ss_pred HHHH----HHHHhCCCCCCCCCCCCCchhhHHHHHHHHHHHHH-HHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccch
Q 008368 263 DVVN----QYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLK-TLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDF 337 (568)
Q Consensus 263 divt----qY~aiF~~~~~~~~~~~~~s~l~~w~~~~v~~fl~-~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF 337 (568)
.++. .-.++||++.. .+..++.+-....++ .+...+..+..+.+-...+.-+-+...++..++-|.
T Consensus 278 ~l~~~~sk~ik~vf~~pe~---------V~q~~iq~If~~~ik~~~~e~le~~~~~~~~l~ylR~L~~Lys~~~k~~~~L 348 (763)
T KOG3745|consen 278 KLCESESKFIKRVFPNPET---------VLQKFIQNIFGQKIKDRVEELLEECKEGKDFLAYLRDLYGLYSSTLKLSKDL 348 (763)
T ss_pred HHHHhHhHHHHHhCCCHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHhhhHHH
Confidence 3332 23578888642 356666655555442 333444433334443334444445555666666665
Q ss_pred hhh
Q 008368 338 RGL 340 (568)
Q Consensus 338 ~~l 340 (568)
...
T Consensus 349 ~~~ 351 (763)
T KOG3745|consen 349 VDY 351 (763)
T ss_pred HHH
Confidence 544
No 27
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=86.51 E-value=65 Score=36.72 Aligned_cols=171 Identities=15% Similarity=0.203 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhh-------hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH
Q 008368 68 AFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSG-------CTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQL 140 (568)
Q Consensus 68 ~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~-------~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~l 140 (568)
-||.-.+-+....+++..++.=++++.+.+.++++. .......++++-..-+-+..+..+..+..+=+-+|+.
T Consensus 69 dyi~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~~L~Nrq~v~s~Ls~fVdd~iVpp~ 148 (683)
T KOG1961|consen 69 DYIKESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQLRLENRQAVESKLSQFVDDLIVPPE 148 (683)
T ss_pred HHHHhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHhccccCCHH
Confidence 455555555555555555444444444444444433 2222222222222222222333444566665667777
Q ss_pred HHHHHHcC-----ChHHHHHHHHH-HhhHh--hcCCCChHHHH-------HHHHHHHHHHHHHHHHHHHhccC---CC--
Q 008368 141 MDTCVRNG-----NYDEALDLEAY-VCKLS--TLHPKLPIIQA-------LAAEVKQTTQSLLSQLLQKLRSN---IQ-- 200 (568)
Q Consensus 141 L~~cI~~~-----~YeeAl~l~~~-~~~ll--~~~~~~p~~~~-------I~~ev~~~~~~l~~~L~~~L~~~---l~-- 200 (568)
|-.-|-.| .|-+|++...+ .+... ...++...+++ ++...-++++..+-+=+..+|.+ .+
T Consensus 149 lI~~I~~g~vne~~f~~~LeeL~~Kl~~v~~dq~~k~a~a~~Dv~~lLdkLR~KAi~kir~~IlqkI~~fRkp~tn~qi~ 228 (683)
T KOG1961|consen 149 LIKTIVDGDVNEPEFLEALEELSHKLKLVELDQSNKDAKALKDVEPLLDKLRLKAIEKIREFILQKIKAFRKPMTNYQIP 228 (683)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHhhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchH
Confidence 77666665 56667776554 33333 22334333443 33344444555444445666643 33
Q ss_pred ----hhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHh
Q 008368 201 ----LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGIL 238 (568)
Q Consensus 201 ----L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L 238 (568)
|-.++.+..+|+.=+....-++|..|...-..+.....
T Consensus 229 ~Q~~LLK~k~~y~FL~~n~r~~A~Elr~aYIdTM~k~y~~yF 270 (683)
T KOG1961|consen 229 QQHALLKYKFFYEFLLENNRELALELRDAYIDTMNKIYLSYF 270 (683)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666777766554434566666665544444433
No 28
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=83.62 E-value=40 Score=31.86 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=27.8
Q ss_pred HHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008368 75 ALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQML 124 (568)
Q Consensus 75 ti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~ 124 (568)
+...+-..++.+.+.++.|...-..+++....|....+..+.+..+-...
T Consensus 15 ~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ 64 (157)
T PF04136_consen 15 ECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEEL 64 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555566666666666666666666555555554443333
No 29
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=83.59 E-value=27 Score=36.54 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHhHhhhhhhHh----HHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 008368 46 LLRVDAERIQRQMQEVAVGNYRAFIA--AADALLAIREEVSSIDKHLD----SMITEIPKLTSGCTEFIESAEEILEKRK 119 (568)
Q Consensus 46 ~L~~e~~~l~~~lq~Lvy~NY~~FI~--atdti~~m~~~~~~~e~~~~----~L~~~l~~i~~~~~~fs~~~~~il~~rr 119 (568)
.+...++.|++-.-+| .-|+..|. .-..+.+|+..|..+...+. .|+..|.++. ..+-.||..|+
T Consensus 154 nIEKSvKDLqRctvSL--~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK-------~EAmeiL~aRq 224 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSL--TRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVK-------AEAMEILDARQ 224 (302)
T ss_pred cHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3445555555544444 45777774 45789999999999888872 4666666555 34557899999
Q ss_pred HHHHHHHhHHHHH------HHhcchHHHHHHHHcCChHHHHHHHH
Q 008368 120 MNQMLLANHSTLL------DLLEIPQLMDTCVRNGNYDEALDLEA 158 (568)
Q Consensus 120 ~~~~~L~~~~~Ll------~LlELP~lL~~cI~~~~YeeAl~l~~ 158 (568)
.....|.+...+- .|.||=..+.-.|..+.|+|.+--..
T Consensus 225 kkAeeLkrltd~A~~MsE~Ql~ELRadIK~fvs~rk~de~lg~~~ 269 (302)
T PF07139_consen 225 KKAEELKRLTDRASQMSEEQLAELRADIKHFVSERKYDEELGRAA 269 (302)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHhhhhhhHHHHhHhh
Confidence 8888887664442 29999999999999999999987543
No 30
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.73 E-value=1.1e+02 Score=34.93 Aligned_cols=128 Identities=20% Similarity=0.277 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH--------HHH----
Q 008368 64 GNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANH--------STL---- 131 (568)
Q Consensus 64 ~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~--------~~L---- 131 (568)
-+.-.|..|...+..+...+..++..+..+.+.|..+...-..=...+..+...-+.....+..+ +.|
T Consensus 91 ~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L 170 (560)
T PF06160_consen 91 ADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQL 170 (560)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHH
Confidence 45668999999999999999999999999999998887655443444554444433332222221 111
Q ss_pred HHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhh----cCCCCh-HHHHHHHHHHHHHHHHHHHH
Q 008368 132 LDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLST----LHPKLP-IIQALAAEVKQTTQSLLSQL 191 (568)
Q Consensus 132 l~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~----~~~~~p-~~~~I~~ev~~~~~~l~~~L 191 (568)
-.+=+-=.....+..+|+|.+|-+....++.-.. ....+| .+..+..+.-..+..+..+-
T Consensus 171 ~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy 235 (560)
T PF06160_consen 171 ENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGY 235 (560)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHH
Confidence 1133333455567779999999999888765432 234455 34555555555555555543
No 31
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=73.87 E-value=1.9e+02 Score=33.95 Aligned_cols=103 Identities=19% Similarity=0.284 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH------HHHHHHHHH-
Q 008368 51 AERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI------LEKRKMNQM- 123 (568)
Q Consensus 51 ~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i------l~~rr~~~~- 123 (568)
.++|..+++.|=+.|.+.+++.-+.+..+...++....+++.+...+......-....+.+..| ++-...|..
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~ 86 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKL 86 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHH
Confidence 4678888999999999999999999999999999988888888877776665555555444433 333333333
Q ss_pred HHHhHHHHHHHhcchHHHHHHHHcCChHHH
Q 008368 124 LLANHSTLLDLLEIPQLMDTCVRNGNYDEA 153 (568)
Q Consensus 124 ~L~~~~~Ll~LlELP~lL~~cI~~~~YeeA 153 (568)
.++..+.|++-++||..--..+.++.+++.
T Consensus 87 L~~eL~~Ll~~l~i~~~~l~~L~~~~l~~~ 116 (701)
T PF09763_consen 87 LLNELENLLDTLSIPEEHLEALRNASLSSP 116 (701)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHhcCCCCCc
Confidence 345668899999999999999988877443
No 32
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=63.40 E-value=27 Score=28.99 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=23.2
Q ss_pred cCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHH
Q 008368 147 NGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVK 181 (568)
Q Consensus 147 ~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~ 181 (568)
.|+|++|+++|..+-.++..-.+..+-..|...+.
T Consensus 19 ~gny~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~ 53 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTSNETMDQALQTKLK 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 58999999999998776654333223344555554
No 33
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=62.54 E-value=3e+02 Score=31.93 Aligned_cols=226 Identities=14% Similarity=0.190 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHH----HHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008368 49 VDAERIQRQMQEVAVGNYRAFIAAA----DALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQML 124 (568)
Q Consensus 49 ~e~~~l~~~lq~Lvy~NY~~FI~at----dti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~ 124 (568)
+..++|.+++..=+.+....|++.- +.++.+...++.|.+.-+.+.+.+..-....+.+...++....+++....+
T Consensus 16 ~aRr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k 95 (618)
T PF06419_consen 16 EARRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELK 95 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777654 456666667777777777777777766666667766777666666665555
Q ss_pred HHhHHHHHHHhcchHHHHHHHHcC--Ch--------HHHHHHHHHHhhHhhcCCCChHHHHHHHHHH----HHHHHHHHH
Q 008368 125 LANHSTLLDLLEIPQLMDTCVRNG--NY--------DEALDLEAYVCKLSTLHPKLPIIQALAAEVK----QTTQSLLSQ 190 (568)
Q Consensus 125 L~~~~~Ll~LlELP~lL~~cI~~~--~Y--------eeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~----~~~~~l~~~ 190 (568)
..-....++=|-|.+.=...+.+| .- +.+-++...++.|+.. .+...-.+|.+++. ...+.+..-
T Consensus 96 ~~ll~~f~~~f~Ls~~E~~~L~~~~~~v~~~FF~~L~r~~~I~~~c~~LL~~-~~~~ag~~iM~~~~~~~e~a~erl~~w 174 (618)
T PF06419_consen 96 KKLLDAFLERFTLSEEEEDALTSGEEPVDDEFFDALDRVQKIHEDCKILLST-ENQRAGLEIMEQMSKYLERAYERLYRW 174 (618)
T ss_pred HHHHHHHHHhCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566677788888888888888 32 2233333334444422 23333444444443 444444444
Q ss_pred HHHHhcc-----CCChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHH-hhhhc---------------ccCHHHH
Q 008368 191 LLQKLRS-----NIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGI-LEDLD---------------QKNAYEY 249 (568)
Q Consensus 191 L~~~L~~-----~l~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~-L~~l~---------------~~~~~~y 249 (568)
+..+++. +-..+...|.+.+|+.=...= ...-..|-.+|...+-.. +.++. ..||.+|
T Consensus 175 ~q~e~~~l~~~~~~~~~~l~~al~~L~~rp~lf-~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RY 253 (618)
T PF06419_consen 175 VQRECRSLNLDNPEVSPLLRRALRYLRERPVLF-NYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRY 253 (618)
T ss_pred HHHHHhhhhhcCcccchHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHH
Confidence 4444442 113445556677776543221 345556777777765433 33331 1267888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 008368 250 LKGMINCHRMHLFDVVNQYRAIFADDT 276 (568)
Q Consensus 250 l~r~ie~~R~~lfdivtqY~aiF~~~~ 276 (568)
+..+.--....+-+=-.-..++|....
T Consensus 254 vGDmLAwvHq~~a~E~E~l~~Lf~~~~ 280 (618)
T PF06419_consen 254 VGDMLAWVHQAIASEREFLESLFKFDE 280 (618)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcccc
Confidence 886654333333222334567886554
No 34
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=58.90 E-value=15 Score=38.35 Aligned_cols=52 Identities=17% Similarity=0.473 Sum_probs=46.5
Q ss_pred chHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 008368 137 IPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLS 189 (568)
Q Consensus 137 LP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~ 189 (568)
+|..++..|++|.|-+|+.+ .++-.+..+||-+|+.+...++.+...+....
T Consensus 177 ~~d~V~~LI~~g~~ieAv~f-i~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~ 228 (290)
T PF07899_consen 177 MPDIVEKLIKKGKQIEAVRF-IYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRK 228 (290)
T ss_pred hHHHHHHHHHCCCccchHHH-HHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 58889999999999999998 68889999999999999999998888777664
No 35
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.22 E-value=2.6e+02 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhcc-CCChhHHHHHHHHhhhcC
Q 008368 183 TTQSLLSQLLQKLRS-NIQLPECLRIIGYLRRIG 215 (568)
Q Consensus 183 ~~~~l~~~L~~~L~~-~l~L~~~~r~V~~LrrL~ 215 (568)
.++..+-.|-+.|+. -+.+.+=+|.|++|.|=.
T Consensus 314 aieD~i~~L~~~~r~G~i~l~~yLr~VR~lsReQ 347 (365)
T KOG2391|consen 314 AIEDAIYSLGKSLRDGVIDLDQYLRHVRLLSREQ 347 (365)
T ss_pred HHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHH
Confidence 344444455555664 467777777777766543
No 36
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=57.66 E-value=58 Score=38.89 Aligned_cols=101 Identities=22% Similarity=0.242 Sum_probs=69.8
Q ss_pred CCCCCChHHHHHHhhc----CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH-hhhhhhHhHH
Q 008368 19 PLASLSQQPYVSELLS----FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEV-SSIDKHLDSM 93 (568)
Q Consensus 19 ~l~s~~~~~Yl~~L~s----~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~-~~~e~~~~~L 93 (568)
.+++.+...|+.++-+ .+|.++.++-+.++.+...-. -...+=..+..++.+..++ ..+++.+++|
T Consensus 602 ~l~~~~~~~~~~~l~~~~t~~dL~~~a~~L~~la~~~~~~~---------~~~~L~~~a~~l~~~~~~~v~pl~~~~~~L 672 (806)
T PF05478_consen 602 GLSDIDFSLYLEQLCKPLTPVDLPSLANQLEALANSLPNGW---------LRNALKNEAQNLRAIQKELVSPLEQLVSKL 672 (806)
T ss_pred CCccCCHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCc---------hhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4667788888888766 345555444444433333211 2334555667788887654 6689999999
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhH
Q 008368 94 ITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANH 128 (568)
Q Consensus 94 ~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~ 128 (568)
.+++.+|++....|...++.++.+-+....-+.+.
T Consensus 673 ~~~l~~L~~~~~~l~~~i~~ll~~v~~aq~fL~~~ 707 (806)
T PF05478_consen 673 NQSLKKLDSLSSNLQNSINILLDAVQRAQDFLRNN 707 (806)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888877766666543
No 37
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=54.50 E-value=1.5e+02 Score=26.34 Aligned_cols=88 Identities=15% Similarity=0.269 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHH----HHHHHH--------HHHHHHHh-HHHHHHHh
Q 008368 69 FIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEE----ILEKRK--------MNQMLLAN-HSTLLDLL 135 (568)
Q Consensus 69 FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~----il~~rr--------~~~~~L~~-~~~Ll~Ll 135 (568)
++-..+.+..+...+..++..++.|.+++|=....|......++. ++..+. .....-.. ...|-+-|
T Consensus 3 i~l~~~~~~~~~~ki~~ve~~V~~l~~~~~i~~~q~~~i~~~v~~rv~~~lgg~~s~ay~~~~~~~k~f~~i~~~lk~~F 82 (116)
T PF10552_consen 3 IKLLMQATEEHNEKIEEVENRVDDLEENMPIDPGQQKEIQKAVKSRVYELLGGKGSPAYKDKSFRRKLFSDIYRDLKRHF 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhccccchhhhhHHhHHHHHHHHHHHHHHh
Confidence 455667778888888889999999988888777777766665443 332221 11111111 24555688
Q ss_pred cchHHHHHHHHcCChHHHHHHHH
Q 008368 136 EIPQLMDTCVRNGNYDEALDLEA 158 (568)
Q Consensus 136 ELP~lL~~cI~~~~YeeAl~l~~ 158 (568)
.+|. .++|...+|++|+++..
T Consensus 83 ~V~s--Y~~I~~kdfd~A~~~I~ 103 (116)
T PF10552_consen 83 GVPS--YKDIPRKDFDEALEFIN 103 (116)
T ss_pred CCch--HHhhhHHHHHHHHHHHH
Confidence 9986 47888999999999863
No 38
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.46 E-value=4.1e+02 Score=31.06 Aligned_cols=99 Identities=19% Similarity=0.198 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHH---HHH
Q 008368 43 EPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILE---KRK 119 (568)
Q Consensus 43 Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~---~rr 119 (568)
..+.|.+.++.+++++..=|..-+....... ......+-.+..|...+.++++...+......+-.+ -+.
T Consensus 76 q~~~L~q~lr~ldrqLh~qv~~Rh~allaQa-------t~~~~~d~~l~sl~~~v~~lqs~i~riknd~~epyk~i~~kt 148 (797)
T KOG2211|consen 76 QCDDLTQKLRELDRQLHAQVLKRHMALLAQA-------TEELFEDLELRSLLVKVAELQSEIKRIKNDNKEPYKIIWLKT 148 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4555666666666666655544444443333 333333334444444444444333332222222111 122
Q ss_pred HHHHHHHhHHHHHH----HhcchHHHHHHHHcC
Q 008368 120 MNQMLLANHSTLLD----LLEIPQLMDTCVRNG 148 (568)
Q Consensus 120 ~~~~~L~~~~~Ll~----LlELP~lL~~cI~~~ 148 (568)
.....|.-...+++ +++|-..|......+
T Consensus 149 ~vl~rLhva~~lLrrsgr~l~LskkL~~l~~~~ 181 (797)
T KOG2211|consen 149 MVLTRLHVAENLLRRSGRALELSKKLASLNSSM 181 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 22222322233333 677777776555443
No 39
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=53.36 E-value=2.2e+02 Score=29.07 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=49.9
Q ss_pred HHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhhcCCCChHHHHH
Q 008368 145 VRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRL 224 (568)
Q Consensus 145 I~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~E~~Lr~ 224 (568)
|++++|++|+++.-.+...+-+++...+-.++. ..|++.+.+ -..+..-....|++.++..++... .-|.
T Consensus 1 v~~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~-------~lliev~~~-~~~~~~~~~~~rl~~l~~~~~~~~--p~r~ 70 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALILLKHGQYGSGADLA-------LLLIEVYEK-SEDPVDEESIARLIELISLFPPEE--PERK 70 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHH-------HHHHHHHHH-TT---SHHHHHHHHHHHHHS-TT---TTHH
T ss_pred CccccHHHHHHHHHHHHHHHHHCCCcchHHHHH-------HHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCCc--chHH
Confidence 578999999999988777766655544333322 122222222 112334555567888888887642 3388
Q ss_pred HHHHHhHHHHHHHhhhhcccCHHH
Q 008368 225 QFLRCREAWLTGILEDLDQKNAYE 248 (568)
Q Consensus 225 ~FL~~R~~~L~~~L~~l~~~~~~~ 248 (568)
.|+..--.|= .-..-+.+++..
T Consensus 71 ~fi~~ai~WS--~~~~~~~Gdp~L 92 (260)
T PF04190_consen 71 KFIKAAIKWS--KFGSYKFGDPEL 92 (260)
T ss_dssp HHHHHHHHHH--HTSS-TT--HHH
T ss_pred HHHHHHHHHH--ccCCCCCCCHHH
Confidence 8888888887 223344455543
No 40
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.29 E-value=4.3e+02 Score=30.89 Aligned_cols=104 Identities=19% Similarity=0.296 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH-------HHHHHHHHH
Q 008368 51 AERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI-------LEKRKMNQM 123 (568)
Q Consensus 51 ~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i-------l~~rr~~~~ 123 (568)
++.|.+++|.|=--|-+..+.+-.-+..|-+.++..-+.++++...+.....--+.....+..| --++..+..
T Consensus 195 aE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ieekn~lie~~n~Nn~k 274 (867)
T KOG2148|consen 195 AERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIEEKNNLIEMQNVNNKK 274 (867)
T ss_pred HHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhccchHH
Confidence 5667777888877788777777766666666555544444443333332221111111111111 122333444
Q ss_pred HHHhHHHHHHHhcchHHHHHHHHcCChHHHH
Q 008368 124 LLANHSTLLDLLEIPQLMDTCVRNGNYDEAL 154 (568)
Q Consensus 124 ~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl 154 (568)
.+.....+..=|++|.-=-..+.+|+|++|-
T Consensus 275 L~eEl~kvin~L~vp~shi~aL~egdf~~a~ 305 (867)
T KOG2148|consen 275 LIEELDKVINRLDVPSSHIAALTEGDFDEAD 305 (867)
T ss_pred HHHHHHHHHHhccCcHHHHHhcccCCccccc
Confidence 5556677777889999999999999999884
No 41
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.15 E-value=46 Score=25.65 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHH
Q 008368 143 TCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQ 185 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~ 185 (568)
.+.+.|+|++|.++ +..+++.-|+.+-.+.+...++..++
T Consensus 10 g~ykl~~Y~~A~~~---~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 10 GHYKLGEYEKARRY---CDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHTT-HHHHHHH---HHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHH---HHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 46788999999986 56777888999988888888887765
No 42
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.98 E-value=1.6e+02 Score=28.60 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHH
Q 008368 37 LDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILE 116 (568)
Q Consensus 37 L~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~ 116 (568)
|.+|-.+.+.|...+.++...|--++.+=-.. +.+++..-++.++.+.+.++.=++.+-.+-..|+..- ..++
T Consensus 127 L~DlE~~~~el~~~vD~llr~lgg~lh~is~l---t~~~vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~----ksm~ 199 (222)
T KOG4514|consen 127 LSDLELEAQELASSVDNLLRNLGGLLHSISSL---TADNVQVYRNAVNKLTDTLDANIKCQYQLLAKAEEIT----KSMK 199 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh---hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHh
Confidence 44555555556555555555555444332111 2345555555555555555544444444544444432 2222
Q ss_pred HHHHHHHHHHhHHHHHHHhc
Q 008368 117 KRKMNQMLLANHSTLLDLLE 136 (568)
Q Consensus 117 ~rr~~~~~L~~~~~Ll~LlE 136 (568)
.-+.-......+.+++++||
T Consensus 200 pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 22222333445566666665
No 43
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=49.58 E-value=2.4e+02 Score=26.86 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI 114 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i 114 (568)
..+++|.-|...+...+..-+.++..|=. +.-.+-..+..++..+..+......+...|......-..+-.....+
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~----~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~ 117 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKK----KIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRV 117 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888777777777652 23334456666777777777777777666665554433433334444
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Q 008368 115 LEKRKMNQMLLANHSTLLDLLEIPQLMDTCVR 146 (568)
Q Consensus 115 l~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~ 146 (568)
-.+|............=..++..|.+|.-+++
T Consensus 118 k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~ 149 (177)
T PF13870_consen 118 KKERDKLRKQNKKLRQQGGLLGVPALLRDYDK 149 (177)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 44444444433333333348899999865543
No 44
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=49.36 E-value=26 Score=22.71 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhh
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCK 162 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ 162 (568)
.+|..|.+.|++++|++++..-++
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 468899999999999999987553
No 45
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=48.76 E-value=84 Score=28.94 Aligned_cols=65 Identities=9% Similarity=0.238 Sum_probs=43.1
Q ss_pred CHHHHhcchHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhh
Q 008368 36 TLDRLHKEPELLRVDAERIQRQMQEVA------VGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKL 100 (568)
Q Consensus 36 sL~~L~~Ep~~L~~e~~~l~~~lq~Lv------y~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i 100 (568)
.-+.+..+...|...++..|..+-.+. .++|.+|...-.-++.|...+..+..-++.+...|..|
T Consensus 43 cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~L 113 (131)
T PF10158_consen 43 CAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETL 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777777777777766554 46777787777777777777777776666655555443
No 46
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=47.04 E-value=30 Score=23.84 Aligned_cols=24 Identities=17% Similarity=0.361 Sum_probs=18.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhHhh
Q 008368 142 DTCVRNGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 142 ~~cI~~~~YeeAl~l~~~~~~ll~ 165 (568)
+.+.+.|+|++|+++|..+-.+..
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcc
Confidence 567889999999999998665543
No 47
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=46.75 E-value=4.6e+02 Score=29.30 Aligned_cols=183 Identities=14% Similarity=0.172 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHH---HHHHHHHHHHhCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCC-CCCChhHHH
Q 008368 245 NAYEYLKGMINCHRMH---LFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKIT-EGVSLSNIL 320 (568)
Q Consensus 245 ~~~~yl~r~ie~~R~~---lfdivtqY~aiF~~~~~~~~~~~~~s~l~~w~~~~v~~fl~~L~~~L~~i~-~~~sL~sll 320 (568)
.|+.|+.-+....++| +..++ +.+|.+.... ...+-..|+...+....+.+...++... +...++.++
T Consensus 29 kPEw~f~~i~~~~~~~~~~l~~~i---q~~~~~~~~~-----~~~~~~~fi~~ll~~~~~Kl~~~l~~~~~~~~~l~HlI 100 (494)
T PF04437_consen 29 KPEWYFTFILKWIRDHRDFLEECI---QPLLDENGLT-----YIDAREEFIRGLLPPVREKLRSDLPELLDDPSLLSHLI 100 (494)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHH---HHH-BGGTB------HHHHHHHHHHHHHHHHHHHHHHHH--TTS-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHHHHHHc---CHHHHhcCCc-----cccHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHH
Confidence 3665555555555555 54444 4444432110 1345678888888888888888886543 345577788
Q ss_pred HHHHHHHhhhhhc-cc--chhhhcchHH--HHHHHHHHHHHHHHHHHHHHHhhhc-cccccCCCCCCCCCCCCCCCCCCC
Q 008368 321 DQCMYCAMGLGWV-GL--DFRGLLPPLF--EEAVLKLFLKNMSTAVENFQLVLDS-HRWVPLPAVGYPAHSVGEESQEDV 394 (568)
Q Consensus 321 ~Q~~y~~~SL~rv-G~--DF~~ll~~l~--~~~~~~~f~~~~~~a~~~f~~~l~~-~~w~~~~~~~~~s~~~~~~~~~~~ 394 (568)
.|++.|=..|... |- |..+.-..+| ...+...+.-..+.|.++|.+.+.+ ..|...-+. .....+..
T Consensus 101 ~e~~~FD~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~-------~~~~~~~~ 173 (494)
T PF04437_consen 101 DEILSFDKELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEIISSPDAWQIDYDD-------VEADSDEL 173 (494)
T ss_dssp HHHHHHHHHHHHTS---S------CGGGS-HHHHHHHHHHHHHHHHHHHH----------------------HTTSSGGG
T ss_pred HHHHHHHHHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhcc-------ccCCchhh
Confidence 9999996555443 11 2223333344 3334444556678899999887765 456432111 00112233
Q ss_pred CCCcccccchHHHHHHHHHHHHHHhhccCC--chhhhHHHHHHHHHHHHH
Q 008368 395 TPPSYLMEHPPLAVFINGVSAAMNELRPCA--PLSLKHVLAEELIKGLQA 442 (568)
Q Consensus 395 ~pP~~L~~~~pLa~~~N~~L~alN~LR~~~--p~~l~~~l~~~L~~~l~~ 442 (568)
-||.+-..+..|..-+..-...|..+-... -..++-.+.+.....|..
T Consensus 174 k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~ 223 (494)
T PF04437_consen 174 KPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQ 223 (494)
T ss_dssp G-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466655555555544444444444443322 235555555544444433
No 48
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=45.86 E-value=85 Score=24.93 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.3
Q ss_pred HcCChHHHHHHHHHHhhHh
Q 008368 146 RNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll 164 (568)
+.|+|++|+++|..+-..+
T Consensus 17 ~~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 17 EAGNYEEALELYKEAIEYL 35 (69)
T ss_dssp HTTSHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 3799999999999987665
No 49
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=44.90 E-value=5.9e+02 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHhHHHhhh
Q 008368 67 RAFIAAADALLAIREEVSSIDKHLDSMITEI 97 (568)
Q Consensus 67 ~~FI~atdti~~m~~~~~~~e~~~~~L~~~l 97 (568)
.=|..+.+.+..++..++.+++-+.+|+.-|
T Consensus 43 ~Wi~k~k~~l~~L~~~l~~ID~ai~~~l~lI 73 (683)
T PF08580_consen 43 DWIQKAKDVLYGLREGLEEIDSAISRFLDLI 73 (683)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3455666777777777777777665554433
No 50
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=44.22 E-value=86 Score=25.59 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHcCChHHHHHHHHHHhhHh
Q 008368 144 CVRNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll 164 (568)
+=..|+|++|+.+|..+-..+
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHHH
Confidence 334799999999999986665
No 51
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=44.03 E-value=88 Score=25.93 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=28.0
Q ss_pred HcCChHHHHHHHHHHhhHhh----cCCCChHHHHHHH---HHHHHHHHHHHHHH
Q 008368 146 RNGNYDEALDLEAYVCKLST----LHPKLPIIQALAA---EVKQTTQSLLSQLL 192 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~----~~~~~p~~~~I~~---ev~~~~~~l~~~L~ 192 (568)
+.|+|++|+.+|..+-..+. ..|+.+.-..+.. +...+...|...|-
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~ 71 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLD 71 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999766553 3454443333333 33444444555443
No 52
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=43.25 E-value=1.7e+02 Score=27.12 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=56.4
Q ss_pred HHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHH-----HHHHHHHHHHHHHHHHhHHHHH-HHhcchHHHHHHHHc
Q 008368 74 DALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIES-----AEEILEKRKMNQMLLANHSTLL-DLLEIPQLMDTCVRN 147 (568)
Q Consensus 74 dti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~-----~~~il~~rr~~~~~L~~~~~Ll-~LlELP~lL~~cI~~ 147 (568)
+++.+|+.....++.....|...+..+...+...... +...+.+++.....+.+..... .|-.+=..+++...+
T Consensus 1 eai~~Lk~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 1 EAILKLKKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777766665554432 2333444444444444443332 244455556665555
Q ss_pred CChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHH
Q 008368 148 GNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQS 186 (568)
Q Consensus 148 ~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~ 186 (568)
...-.|+.-...+-+-..+.=+.+-+..+..++.+.+..
T Consensus 81 ~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 81 QQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMED 119 (171)
T ss_dssp HHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 554444444443322222222344555555555555443
No 53
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=41.75 E-value=99 Score=25.01 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHHhhHhh
Q 008368 147 NGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 147 ~~~YeeAl~l~~~~~~ll~ 165 (568)
.|+|++|+.+|..+-..+.
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 21 AGDYEEALELYKKAIEYLL 39 (77)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 6999999999999876653
No 54
>COG5314 Conjugal transfer/entry exclusion protein [Intracellular trafficking and secretion]
Probab=41.66 E-value=3e+02 Score=28.00 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=58.1
Q ss_pred CCCChHHHHHHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHH----------hhHHHHHHHHHHHHHHHHhHhhhhh
Q 008368 21 ASLSQQPYVSELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAV----------GNYRAFIAAADALLAIREEVSSIDK 88 (568)
Q Consensus 21 ~s~~~~~Yl~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy----------~NY~~FI~atdti~~m~~~~~~~e~ 88 (568)
.-||+..|...+++ .+++.+.+.-+.++.++..+...+|.++. +--+|.+.+.|+..-++.++.++++
T Consensus 35 ~vfdpSN~~Qnilta~rsleqVnnQIqqlQnQaq~yqNmlqNta~l~~~iw~Ql~~~l~kl~~l~d~aqg~afdvg~iD~ 114 (252)
T COG5314 35 IVFDPSNYAQNILTAVRSLEQVNNQIQQLQNQAQQYQNMLQNTAALPFYIWGQLSQVLNKLQNLQDQAQGYAFDVGSIDD 114 (252)
T ss_pred eeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHhHHHhhhhhHHH
Confidence 34788999999777 99999999999999999999999999876 3445666666777777777777777
Q ss_pred hHhHHH
Q 008368 89 HLDSMI 94 (568)
Q Consensus 89 ~~~~L~ 94 (568)
-+...-
T Consensus 115 ~lsr~y 120 (252)
T COG5314 115 YLSRYY 120 (252)
T ss_pred HHHHhc
Confidence 665543
No 55
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.29 E-value=92 Score=36.29 Aligned_cols=62 Identities=18% Similarity=0.277 Sum_probs=37.0
Q ss_pred CCCCCChHHHHHHhhc---CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Q 008368 19 PLASLSQQPYVSELLS---FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEV 83 (568)
Q Consensus 19 ~l~s~~~~~Yl~~L~s---~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~ 83 (568)
+-..++++.|+....+ ..+.++.++-.-+ .+.-...+..=++.||..||+++.-+..+...+
T Consensus 10 ~~~~~t~~~~i~~~~~~~e~dl~~~~~~~~~l---~~as~e~~r~~~~~ny~~fI~~skEi~~le~el 74 (673)
T KOG2215|consen 10 EDEKITPSSYIPSKSKKKESDLQQLCSELVAL---NKASAETLRQKVSMNYKAFIRTSKEISDLEMEL 74 (673)
T ss_pred cccccCccccccchhhhhhhhHHHHHHHHHhh---HHhHHHHHHHHHHHHHHHHHhcCcccccccchH
Confidence 3445678888877766 2233333332222 122266788889999999999994444443333
No 56
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=40.26 E-value=2.4e+02 Score=24.16 Aligned_cols=52 Identities=17% Similarity=0.169 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 008368 72 AADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQML 124 (568)
Q Consensus 72 atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~ 124 (568)
...+.+.++..+.+++..++.|..++..+...-..|.-. ..-+..||.-+..
T Consensus 37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~-~~Ei~~Rr~fv~~ 88 (97)
T PF09177_consen 37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLS-EEEISRRRQFVSA 88 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-H-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCC-HHHHHHHHHHHHH
Confidence 346788999999999999999999998888777777333 3344555554443
No 57
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=39.31 E-value=3.4e+02 Score=25.63 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI 114 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i 114 (568)
.-|.+|-++...++.....+-..++.....--.. +-+++...+..++.+...++.=.+.+..+-+.|++..+....+
T Consensus 52 ~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~---Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakceELn~~M~~v 128 (149)
T PF10157_consen 52 AVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAI---TVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCEELNESMKPV 128 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777666666655555544432221 2244444455555555555555555555555555543333322
Q ss_pred HHHHHHHHHHHHhHHHHHHHhc
Q 008368 115 LEKRKMNQMLLANHSTLLDLLE 136 (568)
Q Consensus 115 l~~rr~~~~~L~~~~~Ll~LlE 136 (568)
......+....+++|.||
T Consensus 129 ----~~La~qIK~Ik~~lD~lE 146 (149)
T PF10157_consen 129 ----YKLAQQIKDIKKLLDLLE 146 (149)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 222223344455666555
No 58
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=38.96 E-value=1.1e+02 Score=24.62 Aligned_cols=19 Identities=37% Similarity=0.522 Sum_probs=15.9
Q ss_pred cCChHHHHHHHHHHhhHhh
Q 008368 147 NGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 147 ~~~YeeAl~l~~~~~~ll~ 165 (568)
.|+|++|+.+|..+-..+.
T Consensus 19 ~g~~~~Al~~Y~~a~e~l~ 37 (75)
T cd02656 19 DGNYEEALELYKEALDYLL 37 (75)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 5999999999999866653
No 59
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=38.52 E-value=7.6e+02 Score=29.69 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=33.2
Q ss_pred HHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008368 157 EAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRS 197 (568)
Q Consensus 157 ~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~ 197 (568)
..|++.++.-+.+..-|..|.+.|+..-+.+.++|.-+|..
T Consensus 410 ~eHan~lliifeN~refldikqkcdqaKQEiakNLhtRlk~ 450 (1424)
T KOG4572|consen 410 EEHANCLLIIFENFREFLDIKQKCDQAKQEIAKNLHTRLKG 450 (1424)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Confidence 34666666666677779999999999999999999888863
No 60
>PF13041 PPR_2: PPR repeat family
Probab=38.39 E-value=70 Score=23.39 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=25.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHH
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQA 175 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~ 175 (568)
.+|+.+.+.|++++|++++..-++-.- -|+.-.+..
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~g~-~P~~~Ty~~ 43 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKRGI-KPDSYTYNI 43 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCC-CCCHHHHHH
Confidence 468999999999999999988764422 244444433
No 61
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=37.88 E-value=5e+02 Score=27.18 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=82.0
Q ss_pred hHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHH---HcCChHHHHHHHH
Q 008368 82 EVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCV---RNGNYDEALDLEA 158 (568)
Q Consensus 82 ~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI---~~~~YeeAl~l~~ 158 (568)
.-+.+.-.+..|+..|-.+-..|+.+.+.+...+..++.....-.+- .|. .....++...+..
T Consensus 28 e~e~~~~~~~~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~~~~~~--------------~~~~~~~~~~l~~l~~Ll~ 93 (335)
T PF08429_consen 28 EGEKIPFPLPELLENLRNFVKRAESWVEKAQQLLSRKQRTRRRNGKA--------------EDQKSRNKLTLEELEALLE 93 (335)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcc--------------ccccccccCCHHHHHHHHH
Confidence 33334344456666666677788888888888775543332111000 111 1234555666666
Q ss_pred HHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHhhhcCCCC-h-HHHHHHHHHHhHHHHHH
Q 008368 159 YVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFS-E-YEMRLQFLRCREAWLTG 236 (568)
Q Consensus 159 ~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L~~~~r~V~~LrrL~~~~-E-~~Lr~~FL~~R~~~L~~ 236 (568)
.+..+.-..|.+..++....+++.-.......|.. ..+..+.++-+.+..=..++..- | +.|+. .+ .+..|+..
T Consensus 94 e~~~L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~--~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~-~l-~~~~W~~~ 169 (335)
T PF08429_consen 94 EIESLPFDCPEIDQLKELLEEVEEFQSRAQEALSD--PESPSLEELEELLEEGESFGVDLPELDQLRR-RL-EQLEWLEE 169 (335)
T ss_pred HHhcCCeeCchHHHHHHHHHHHHHHHHHHHHHHhc--cccCCHHHHHHHHHhcccCceeChhHHHHHH-HH-HHHHHHHH
Confidence 66666656677777777777776665555555444 33445556655454444444422 1 22333 23 35568877
Q ss_pred Hhhhhccc--CHHHHHHHHHH
Q 008368 237 ILEDLDQK--NAYEYLKGMIN 255 (568)
Q Consensus 237 ~L~~l~~~--~~~~yl~r~ie 255 (568)
.-..+... -+...+.++++
T Consensus 170 ~~~~~~~~~~~tL~~l~~Ll~ 190 (335)
T PF08429_consen 170 AREILSDPDRLTLDELRELLD 190 (335)
T ss_pred HHHHhccccCCcHHHHHHHHH
Confidence 66655544 23444444443
No 62
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=37.69 E-value=1.1e+02 Score=25.40 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=25.2
Q ss_pred HHHcCChHHHHHHHHHHhhHh----hcCCCChHHHHHHH
Q 008368 144 CVRNGNYDEALDLEAYVCKLS----TLHPKLPIIQALAA 178 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll----~~~~~~p~~~~I~~ 178 (568)
|=++|+|+||+-+|..+-.++ ..+||.+.-..+..
T Consensus 16 ~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 16 AEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 445899999999999976655 56788775443333
No 63
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=37.36 E-value=2.2e+02 Score=23.88 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=6.6
Q ss_pred HHHHHHHHhHhhhhhhHh
Q 008368 74 DALLAIREEVSSIDKHLD 91 (568)
Q Consensus 74 dti~~m~~~~~~~e~~~~ 91 (568)
++++.+...++.++.+++
T Consensus 26 ~~l~~~~~ti~~l~~~~~ 43 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVD 43 (90)
T ss_pred HHHHHHHHHHHHHHHhHH
Confidence 333333333333333333
No 64
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=36.62 E-value=45 Score=21.17 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=19.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHh
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVC 161 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~ 161 (568)
.+|+.|.+.|++++|.+++..-.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHh
Confidence 46889999999999999987643
No 65
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=35.49 E-value=2.2e+02 Score=22.32 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=42.8
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhh
Q 008368 38 DRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPK 99 (568)
Q Consensus 38 ~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~ 99 (568)
+.|.+|...| ....++-.++-+...+=-..+-.-.+.+..+...+..+.+.+..-...|..
T Consensus 1 d~l~~e~~~L-~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~ 61 (66)
T PF12352_consen 1 DRLLRESDSL-QRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKR 61 (66)
T ss_dssp HHHHHHHCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3466777888 667777777777777777777777788888877777777776544444433
No 66
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.02 E-value=2.3e+02 Score=23.75 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=37.4
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHH--H--HHHHHHHHHHHHhHhhhhhhHhHHHhhhhh
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRA--F--IAAADALLAIREEVSSIDKHLDSMITEIPK 99 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~--F--I~atdti~~m~~~~~~~e~~~~~L~~~l~~ 99 (568)
..+.+|.+....|...+..+..+++.+-.-++.. | +.-..-+..++..+..+...+..+-..+.+
T Consensus 21 ~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 21 QQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666677777777777776644422 2 334445555566666665555555444433
No 67
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.97 E-value=99 Score=25.68 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=17.2
Q ss_pred HcCChHHHHHHHHHHhhHhhc
Q 008368 146 RNGNYDEALDLEAYVCKLSTL 166 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~~ 166 (568)
+.|+|++|+.+|..+-.++..
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HccCHHHHHHHHHHHHHHHHH
Confidence 479999999999998766643
No 68
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=34.34 E-value=1.1e+02 Score=25.27 Aligned_cols=48 Identities=19% Similarity=0.082 Sum_probs=28.1
Q ss_pred cCChHHHHHHHHHHhhHhhc---CCCChHH-HHHHHHHHHHHHHHHHHHHHHh
Q 008368 147 NGNYDEALDLEAYVCKLSTL---HPKLPII-QALAAEVKQTTQSLLSQLLQKL 195 (568)
Q Consensus 147 ~~~YeeAl~l~~~~~~ll~~---~~~~p~~-~~I~~ev~~~~~~l~~~L~~~L 195 (568)
.|+|++|+.+|..+-..+.. +...|-. ..|...+.+-+.+ .+.|...|
T Consensus 19 ~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~R-AE~LK~~l 70 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSR-AEELKALI 70 (75)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 69999999999998766533 3344433 3444455544443 33333333
No 69
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=34.32 E-value=2.1e+02 Score=27.39 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=47.9
Q ss_pred HHHHHhccCCChhHHHHHHHHhhhcCCC----------Ch----------HHHHHHHHHHhHHHHHHHhhhhc---c---
Q 008368 190 QLLQKLRSNIQLPECLRIIGYLRRIGVF----------SE----------YEMRLQFLRCREAWLTGILEDLD---Q--- 243 (568)
Q Consensus 190 ~L~~~L~~~l~L~~~~r~V~~LrrL~~~----------~E----------~~Lr~~FL~~R~~~L~~~L~~l~---~--- 243 (568)
.|-+.++++++..++.+.+.+|.++|.. ++ ..+...|- ..+++-..++++ .
T Consensus 44 ~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~~l~~~~~~~~~avr~~h---~q~~~lA~~al~~~p~~~R 120 (171)
T PF14394_consen 44 WIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDKSLTTSSEIPSEAVRSYH---KQMLELAQEALDRVPPEER 120 (171)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecceeeCCCCCcHHHHHHHH---HHHHHHHHHHHHhCCcccc
Confidence 3445667788888889999999999853 00 12222222 233333333332 1
Q ss_pred ----------cCHHHHHHHHHHHHHHHHHHHHHH
Q 008368 244 ----------KNAYEYLKGMINCHRMHLFDVVNQ 267 (568)
Q Consensus 244 ----------~~~~~yl~r~ie~~R~~lfdivtq 267 (568)
+..+.-|++.|+.||..+..++++
T Consensus 121 ~~s~~T~~vs~~~~~ki~~~i~~fRk~i~~i~~~ 154 (171)
T PF14394_consen 121 DFSGLTMSVSREDYEKIKKEIREFRKKIIAIAEE 154 (171)
T ss_pred ceeeeEEEeCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 135889999999999988888764
No 70
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=34.24 E-value=3e+02 Score=30.69 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=51.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-hHHHHHH-Hhc
Q 008368 59 QEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQMLLA-NHSTLLD-LLE 136 (568)
Q Consensus 59 q~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~-~~~~Ll~-LlE 136 (568)
+.-+-.++.||+.|-...|++|-+...+.+..+++.+ +.+.++.-.......++.-++-+.++..|. +.+.|.+ +-.
T Consensus 388 ~~rlR~hQRkfL~AI~~fR~Vk~~qRkl~e~~nsl~d-~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~~l~s 466 (489)
T KOG3684|consen 388 QARLRKHQRKFLQAIHQFRSVKWEQRKLSEQANSLVD-LAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTASLSS 466 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445678999999999999999988887666555433 122221111112222222222333333343 3355555 778
Q ss_pred chHHHHHHHHc
Q 008368 137 IPQLMDTCVRN 147 (568)
Q Consensus 137 LP~lL~~cI~~ 147 (568)
+|.++..|+++
T Consensus 467 ~~~~~~~~~~~ 477 (489)
T KOG3684|consen 467 LPGLLAQPLRS 477 (489)
T ss_pred CchhhcCcccc
Confidence 99999888765
No 71
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=34.15 E-value=61 Score=22.73 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=23.6
Q ss_pred hcchHHHHHHHHcCChHHHHHHHHHHhhHh
Q 008368 135 LEIPQLMDTCVRNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 135 lELP~lL~~cI~~~~YeeAl~l~~~~~~ll 164 (568)
-+|=..|..|+.+.+|++|..+-.....|.
T Consensus 5 ~~l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 5 KELEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 345578999999999999999987776654
No 72
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=33.57 E-value=65 Score=20.96 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=20.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhh
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCK 162 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ 162 (568)
.+|+.|.+.|+++.|.+++..-++
T Consensus 6 ~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 6 ALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 368999999999999999887554
No 73
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.56 E-value=8.7e+02 Score=28.73 Aligned_cols=166 Identities=15% Similarity=0.282 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhc-cCCChhHHHHHHHHhhhcCCCCh--HHHHHHHHHHhHHH--HHH--------
Q 008368 170 LPIIQALAAEVKQTTQSLLSQLLQKLR-SNIQLPECLRIIGYLRRIGVFSE--YEMRLQFLRCREAW--LTG-------- 236 (568)
Q Consensus 170 ~p~~~~I~~ev~~~~~~l~~~L~~~L~-~~l~L~~~~r~V~~LrrL~~~~E--~~Lr~~FL~~R~~~--L~~-------- 236 (568)
+.-++++.+..++.++.|... +++|. ....|..+ |..|.||..... .+|.. .+. |..| +.+
T Consensus 88 i~eiks~ae~Te~~V~eiTrd-IKqLD~AKkNLTtS---iT~L~~L~MLv~~vesL~~-l~~-kr~y~e~a~~lqai~~l 161 (793)
T KOG2180|consen 88 IQEIKSVAESTEAMVQEITRD-IKQLDFAKKNLTTS---ITTLHRLHMLVTGVESLNA-LLS-KRSYGEAASPLQAILQL 161 (793)
T ss_pred HHHHHHHHHhHHHHHHHHHHH-HHhhhHHHhhHHHH---HHHHHHHHHHHHHHHHHHH-HHh-hccHHHHHhHHHHHHHH
Confidence 445666666777777777766 34454 23345555 555666554321 11111 110 1110 001
Q ss_pred --HhhhhcccCHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCCC--------------CCCC---chhhHHHHH-HH
Q 008368 237 --ILEDLDQKNAYEYLKGMINCHRMHLFD-VVNQYRAIFADDTSGSE--------------ENYD---GGLLFSWAM-HQ 295 (568)
Q Consensus 237 --~L~~l~~~~~~~yl~r~ie~~R~~lfd-ivtqY~aiF~~~~~~~~--------------~~~~---~s~l~~w~~-~~ 295 (568)
+..+...-+--.+|.+-|+-+...+.. |..-|.+.|+......+ +..+ ..-++.|+. ++
T Consensus 162 l~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIkwf~~qq 241 (793)
T KOG2180|consen 162 LNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIKWFCSQQ 241 (793)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 111111112233555444544443333 45568999977654211 0012 234667766 45
Q ss_pred HHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccchhhhcchHHHHHH
Q 008368 296 ITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAV 349 (568)
Q Consensus 296 v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~l~~~~~ 349 (568)
+..|..+++.. .+.++|+.+=..-.|+- |.=.||...-.|+|...|
T Consensus 242 L~ey~~IF~en----~E~a~LDkidrRY~wfK----r~L~~fe~k~~~iFP~dW 287 (793)
T KOG2180|consen 242 LEEYEQIFREN----EEAASLDKLDRRYAWFK----RLLRDFEEKWKPIFPADW 287 (793)
T ss_pred HHHHHHHHhcc----HhhhhhhhHHHHHHHHH----HHHHHHHHhccccCCccc
Confidence 78887776542 22455555444333332 333344444444444443
No 74
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.33 E-value=6e+02 Score=26.76 Aligned_cols=70 Identities=17% Similarity=0.353 Sum_probs=48.7
Q ss_pred ChHHHHHHhhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhh----hhhhHhHHHhhhhh
Q 008368 24 SQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSS----IDKHLDSMITEIPK 99 (568)
Q Consensus 24 ~~~~Yl~~L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~----~e~~~~~L~~~l~~ 99 (568)
++..||++|.+ ++.+.-+.+++.-+++.+++..|+ .+|-.+++++..++..... |++....|..-|..
T Consensus 245 ~~~~~Ldklh~----eit~~LEkI~SREK~lNnqL~~l~----q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e 316 (384)
T KOG0972|consen 245 NVGPYLDKLHK----EITKALEKIASREKSLNNQLASLM----QKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDE 316 (384)
T ss_pred chhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 46778888876 233344556677788888888887 4689999999999888776 44444555555555
Q ss_pred hh
Q 008368 100 LT 101 (568)
Q Consensus 100 i~ 101 (568)
+.
T Consensus 317 ~E 318 (384)
T KOG0972|consen 317 IE 318 (384)
T ss_pred HH
Confidence 44
No 75
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=32.49 E-value=3e+02 Score=23.03 Aligned_cols=41 Identities=15% Similarity=0.464 Sum_probs=18.7
Q ss_pred HHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHH
Q 008368 75 ALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEIL 115 (568)
Q Consensus 75 ti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il 115 (568)
+++++++.++++...++.+...+..+..........++.++
T Consensus 20 ~l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~ 60 (90)
T PF06103_consen 20 VLKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELL 60 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443
No 76
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.72 E-value=8.9e+02 Score=28.30 Aligned_cols=132 Identities=13% Similarity=0.100 Sum_probs=78.4
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 008368 41 HKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKM 120 (568)
Q Consensus 41 ~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~ 120 (568)
.++-..++.++..+.++...+..+.-..-=.+.++++.+...+..++..+......+..++..-+.+ . |.+
T Consensus 345 ~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l--------~-~~r 415 (656)
T PRK06975 345 NRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDL--------S-RNR 415 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h-cCh
Confidence 3456667777777777777777777333334777888888888888887777666666665333222 1 122
Q ss_pred HHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHH
Q 008368 121 NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSL 187 (568)
Q Consensus 121 ~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l 187 (568)
+.-.|...+.|+.+= -+...-.|+.+-|+.++..+...+.... .|.+-.+++-+.+-+..|
T Consensus 416 ~dW~laEae~Ll~lA-----~q~L~l~~dv~~A~~~L~~AD~~La~~~-~P~l~~lR~Ala~Di~~L 476 (656)
T PRK06975 416 DDWMIAEVEQMLSSA-----SQQLQLTGNVQLALIALQNADARLATSD-SPQAVAVRKAIAQDIERL 476 (656)
T ss_pred hhhHHHHHHHHHHHH-----HHHHHHhCCHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 223333333333321 1223336999999999999988887643 344444444444444333
No 77
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=30.65 E-value=4.1e+02 Score=24.08 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHH
Q 008368 48 RVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEF 107 (568)
Q Consensus 48 ~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~f 107 (568)
...++++..+++++=.+=+....+-++.+=.=-..+..+++.++.+...+..+..+.++.
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL 91 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERL 91 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444444444444444444444444444444444444444444443
No 78
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.44 E-value=5.6e+02 Score=27.03 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 008368 45 ELLRVDAERIQ 55 (568)
Q Consensus 45 ~~L~~e~~~l~ 55 (568)
+.|..+.+.+.
T Consensus 159 ~~L~~D~~~L~ 169 (325)
T PF08317_consen 159 ELLQEDYAKLD 169 (325)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 79
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=30.40 E-value=9.7e+02 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.314 Sum_probs=36.2
Q ss_pred CCChHHHHHHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHHh
Q 008368 22 SLSQQPYVSELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAVG 64 (568)
Q Consensus 22 s~~~~~Yl~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~ 64 (568)
|+..+.|..++.. ..+..+.+|...|+.+++++..++++-...
T Consensus 401 ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~ 445 (961)
T KOG4673|consen 401 SSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLK 445 (961)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhh
Confidence 5668899999988 788888999999999999998888865544
No 80
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=30.16 E-value=2.7e+02 Score=22.98 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=29.0
Q ss_pred HcCChHHHHHHHHHHhhHhh---cCCCChHHHH-HHHHHHHHHHHHHHHHHHHh
Q 008368 146 RNGNYDEALDLEAYVCKLST---LHPKLPIIQA-LAAEVKQTTQSLLSQLLQKL 195 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~---~~~~~p~~~~-I~~ev~~~~~~l~~~L~~~L 195 (568)
.+|+|++|+++|..+-..+. +|...|..+. |...+.+-+..--.-+...|
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~~l 71 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRLHL 71 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46999999999999876653 3444444333 33345544444433333333
No 81
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=30.04 E-value=1.5e+02 Score=31.07 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=47.0
Q ss_pred HHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcC-----CCChHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Q 008368 129 STLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLH-----PKLPIIQALAAEVKQTTQSLLSQLLQKLRSN----- 198 (568)
Q Consensus 129 ~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~-----~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~~----- 198 (568)
...+++|++|..|+..++ ..+.++.+..++.+.. .+.+ ...+..+.++..+. ...+.+.|+.+
T Consensus 138 g~tLrlL~lP~~l~~~l~-----~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~~L~dp~~T~~ 210 (305)
T PF02374_consen 138 GHTLRLLSLPERLRWWLD-----RLLKLRRKIRSLARPLSGLGLGAVP-LDEILEELEEMRER-LERLRELLRDPERTSF 210 (305)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHCHHHHHHHHCHSHCCHHH-HHHHHHHHHHHHHH-HHHHHHHHTSTTTEEE
T ss_pred HHHHHHHhHHHHHHHHHH-----HHHHHHHhhcchhhhhhcccccccc-hHHHHHHHHHHHHH-HHHHHHHhcCCCCcEE
Confidence 566789999999998886 3444444333332221 1111 11344444333222 34455566532
Q ss_pred --------CChhHHHHHHHHhhhcCCC
Q 008368 199 --------IQLPECLRIIGYLRRIGVF 217 (568)
Q Consensus 199 --------l~L~~~~r~V~~LrrL~~~ 217 (568)
+.+.++.|.+..|...|..
T Consensus 211 ~lV~~pE~l~i~Et~r~~~~L~~~gi~ 237 (305)
T PF02374_consen 211 RLVTNPEPLAIAETERLLTELKLYGIP 237 (305)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHTT-E
T ss_pred EEEecCCcchHHHHHHHHHHHHhcCCc
Confidence 2678999999999999863
No 82
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=29.97 E-value=2.7e+02 Score=24.70 Aligned_cols=62 Identities=18% Similarity=0.137 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCC
Q 008368 108 IESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPK 169 (568)
Q Consensus 108 s~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~ 169 (568)
.......+++.+.....+.+|+.+-++-.-=.++...|..++.++++.-...++.+....++
T Consensus 51 ~~~l~~~W~k~~~~~~~~~~h~eid~i~~sl~rl~~~i~~~dk~~~l~el~~lk~~i~~i~~ 112 (121)
T PF14276_consen 51 TEELEKEWDKNKKRWSILIEHQEIDNIDISLARLKGYIEAKDKSESLAELAELKELIEHIPE 112 (121)
T ss_pred HHHHHHHHHhhchheeeeecHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777888998888777778899999999999999998888887765443
No 83
>PF08463 EcoEI_R_C: EcoEI R protein C-terminal; InterPro: IPR013670 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. Type III restriction endonucleases (3.1.21.5 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. Type III enzymes are hetero-oligomeric, multifunctional proteins composed of two subunits, Res and Mod. The Mod subunit recognises the DNA sequence specific for the system and is a modification methyltransferase; as such it is functionally equivalent to the M and S subunits of type I restriction endonuclease. Res is required for restriction, although it has no enzymatic activity on its own. Type III enzymes recognise short 5-6 bp long asymmetric DNA sequences and cleave 25-27 bp downstream to leave short, single-stranded 5' protrusions. They require the presence of two inversely oriented unmethylated recognition sites for restriction to occur. These enzymes methylate only one strand of the DNA, at the N-6 position of adenosyl residues, so newly replicated DNA will have only one strand methylated, which is sufficient to protect against restriction. Type III enzymes belong to the beta-subfamily of N6 adenine methyltransferases, containing the nine motifs that characterise this family, including motif I, the AdoMet binding pocket (FXGXG), and motif IV, the catalytic region (S/D/N (PP) Y/F) [, ]. This entry represents the C-terminal domain found in both the R subunit of type I enzymes and the Res subunit of type III enzymes. The type I enzyme represented is EcoEI, which recognises 5'-GAGN(7)ATGC-3; the R protein (HsdR) is required for both nuclease and ATPase activity [, ]. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=29.61 E-value=3e+02 Score=25.57 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHHHHHHHHhhHhhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhcc--C-CChhHHHH--------HHHHhhhc-CCCC
Q 008368 152 EALDLEAYVCKLSTLH-PKLPIIQALAAEVKQTTQSLLSQLLQKLRS--N-IQLPECLR--------IIGYLRRI-GVFS 218 (568)
Q Consensus 152 eAl~l~~~~~~ll~~~-~~~p~~~~I~~ev~~~~~~l~~~L~~~L~~--~-l~L~~~~r--------~V~~LrrL-~~~~ 218 (568)
++-++-..++.....+ ++.+.++.|... ......++..|...+.. . .+.....+ .+.++|.+ |...
T Consensus 2 ~~~~y~e~~~~~l~~~~~~~~al~~i~~~-~~~~~~~L~eL~~~l~~~~~~~~~~~l~~~~~~~~~dl~~~ir~i~g~d~ 80 (164)
T PF08463_consen 2 EAEDYRERFRKYLREHFDDIEALRKIWSN-PPLTEADLKELEEKLIDPEELFTEEDLWETYEAIDADLFDFIRHILGLDT 80 (164)
T ss_pred CHHHHHHHHHHHHHHHhcCHHHHHHHHcC-cccCHHHHHHHHHhCcccccccCHHHHHhhcccccCCHHHHHHHHHhcCC
Confidence 3445555566665555 788999999988 66667777777777742 2 22322222 56666666 4321
Q ss_pred -----hHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHH
Q 008368 219 -----EYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDV 264 (568)
Q Consensus 219 -----E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lfdi 264 (568)
+......| ..|+...- -......+|..+++.+..+-...
T Consensus 81 ~l~tr~erv~~~~----~~~l~~~~---~~~~Q~~~L~~i~~~~~~~G~~~ 124 (164)
T PF08463_consen 81 PLLTRRERVEEAF----SKFLNQHQ---FNAEQREFLERILDYYAQNGIIE 124 (164)
T ss_pred CCCCHHHHHHHHH----HHHHHhcC---CCHHHHHHHHHHHHHHHHhCccc
Confidence 12222222 23332211 11233567777777776554444
No 84
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=29.24 E-value=72 Score=21.63 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=18.4
Q ss_pred HHHHHcCChHHHHHHHHHHhhHhhc
Q 008368 142 DTCVRNGNYDEALDLEAYVCKLSTL 166 (568)
Q Consensus 142 ~~cI~~~~YeeAl~l~~~~~~ll~~ 166 (568)
..+...|+|++|+.++..+-.+.++
T Consensus 10 ~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 10 NAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhcchhhHHHHHHHHHHHH
Confidence 3456789999999999998877654
No 85
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.15 E-value=9.1e+02 Score=27.58 Aligned_cols=131 Identities=17% Similarity=0.266 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHhHHH---HHH-----Hhcch
Q 008368 68 AFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK-RKMNQMLLANHST---LLD-----LLEIP 138 (568)
Q Consensus 68 ~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~-rr~~~~~L~~~~~---Ll~-----LlELP 138 (568)
.|..|...+..+-+.+..++.+++...+.+..+-..-..=+..+...+.. ++.....+.+.+. ... |=.+-
T Consensus 98 rF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~ 177 (570)
T COG4477 98 RFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIE 177 (570)
T ss_pred hhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 49999999999999999999999999988887754433222333333211 1111122222222 221 22233
Q ss_pred HHHHHH---HHcCChHHHHHHHHHHhhHhhcC----CCCh-HHHHHHHHHHHHHHHHHHHHHHHhccC
Q 008368 139 QLMDTC---VRNGNYDEALDLEAYVCKLSTLH----PKLP-IIQALAAEVKQTTQSLLSQLLQKLRSN 198 (568)
Q Consensus 139 ~lL~~c---I~~~~YeeAl~l~~~~~~ll~~~----~~~p-~~~~I~~ev~~~~~~l~~~L~~~L~~~ 198 (568)
..+... =..|+|=+|-+....++...... ..+| ++..+..++=..++.|..+.......+
T Consensus 178 ~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~g 245 (570)
T COG4477 178 EELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEG 245 (570)
T ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHcc
Confidence 333333 34699999988888877654321 2344 355555555566666666655444433
No 86
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=29.07 E-value=6.1e+02 Score=30.00 Aligned_cols=67 Identities=12% Similarity=0.167 Sum_probs=44.5
Q ss_pred cCCHHHHhcchHHHHHHHHHHHHHHHHHHHhh--HHHH-HHHHHHHHHHHHhHhhhhhhHhHHHhhhhhh
Q 008368 34 SFTLDRLHKEPELLRVDAERIQRQMQEVAVGN--YRAF-IAAADALLAIREEVSSIDKHLDSMITEIPKL 100 (568)
Q Consensus 34 s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~N--Y~~F-I~atdti~~m~~~~~~~e~~~~~L~~~l~~i 100 (568)
..-..+|-.|-..|+.|.+..+++++.+.-+. |..+ -.....+..+...+..|.++...|.++|.+=
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaE 613 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAE 613 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 34456677788888888888888888887744 4555 3334455566666667777777777766543
No 87
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.07 E-value=6e+02 Score=26.73 Aligned_cols=55 Identities=13% Similarity=0.268 Sum_probs=44.7
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHL 90 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~ 90 (568)
..+++...+-+..+..++.++.....|-+.| +++.++......++..++..-...
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~h-s~~l~~~~~~~~~k~~l~~~~~~~ 87 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLH-SKSLHSPNADKELKRKLESLVDEI 87 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHhccccccHHHHHHHHHHHHHH
Confidence 3467777788888999999999999999999 999999888888887776654444
No 88
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=27.95 E-value=95 Score=23.69 Aligned_cols=36 Identities=36% Similarity=0.476 Sum_probs=18.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHH
Q 008368 140 LMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAA 178 (568)
Q Consensus 140 lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ 178 (568)
+-..+++.|+|++|..++.. +....|+.|-+..+..
T Consensus 31 la~~~~~~g~~~~A~~~l~~---~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLER---LLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHC---CHGGGTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH---HHHHCcCHHHHHHHHh
Confidence 44556666777777666433 3344455454444443
No 89
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.90 E-value=74 Score=22.82 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHcCChHHHHHHHHHHhhHhhcC
Q 008368 142 DTCVRNGNYDEALDLEAYVCKLSTLH 167 (568)
Q Consensus 142 ~~cI~~~~YeeAl~l~~~~~~ll~~~ 167 (568)
+..+.+++|++|++.|..+-.+.+++
T Consensus 9 eisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 9 EISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 34577999999999999988887653
No 90
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=27.65 E-value=3.6e+02 Score=22.49 Aligned_cols=34 Identities=15% Similarity=0.470 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhh
Q 008368 68 AFIAAADALLAIREEVSSIDKHLDSMITEIPKLT 101 (568)
Q Consensus 68 ~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~ 101 (568)
.|.-.-+.|+.+-.+++.++..++.|..++|.++
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~ 38 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVT 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Confidence 3555556666666667777777777777776654
No 91
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.56 E-value=4.1e+02 Score=24.97 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIRE 81 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~ 81 (568)
..+++|..+.+.+.+++..++.++..|-- --+.|=.+-+|++.++.
T Consensus 6 ~~le~l~a~lq~l~~qie~L~~~i~~l~~-~~~e~~~~~~tl~~lk~ 51 (145)
T COG1730 6 QELEELAAQLQILQSQIESLQAQIAALNA-AISELQTAIETLENLKG 51 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 57888888888888888888888877643 23344455555555554
No 92
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.45 E-value=1.1e+03 Score=27.87 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=38.3
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIA-AADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFI 108 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~-atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs 108 (568)
++++.+-+|-..+.+....+.++-+.++..--..--. ..-+--.++-+|..+++.++.|.+..+.-...+-+|+
T Consensus 205 sgIdvId~el~fv~~s~~evrN~a~~vLe~glq~~ne~qvgtglqvfynfgtLekt~d~lv~~y~ad~e~sl~~v 279 (797)
T KOG2211|consen 205 SGIDVIDKELMFVSNSSPEVRNKALPVLEAGLQSHNEQQVGTGLQVFYNFGTLEKTADLLVSRYPADTEYSLRFV 279 (797)
T ss_pred cchHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhcHHHHhhHHHHHHhcchHHHHHHHHHHhcccchHHHHHHH
Confidence 4555555555444443333333333333322111111 1123345677888888888888887776665555553
No 93
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.31 E-value=6.3e+02 Score=25.15 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHH--------HHHHHHHHHHHHHHHHHHHhHH-HHHHHhcchHH
Q 008368 70 IAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEF--------IESAEEILEKRKMNQMLLANHS-TLLDLLEIPQL 140 (568)
Q Consensus 70 I~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~f--------s~~~~~il~~rr~~~~~L~~~~-~Ll~LlELP~l 140 (568)
++..|++..+++....++.++..|...+.........- ...+-..|.+|+..-..+.+.. .+..|-++=..
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ 93 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFT 93 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777766554443332111100 1122234444444444343332 22224344444
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHH
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQ 185 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~ 185 (568)
+...-.+...=.|+.....+-+-..+.=++.-|..+..++.+.+.
T Consensus 94 ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e 138 (211)
T PTZ00464 94 TESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYE 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 444444434444555544442222221234445555555555443
No 94
>PRK10884 SH3 domain-containing protein; Provisional
Probab=27.15 E-value=3.4e+02 Score=26.95 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=25.0
Q ss_pred CCChHHHHHHhhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 008368 22 SLSQQPYVSELLS--FTLDRLHKEPELLRVDAERIQRQMQEVAV 63 (568)
Q Consensus 22 s~~~~~Yl~~L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy 63 (568)
.+-+..||+.-.+ .-+++|.+|-+.++.+...++++..+..-
T Consensus 78 GWV~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~ 121 (206)
T PRK10884 78 AWIPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTA 121 (206)
T ss_pred EeEEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445667665433 55666667777777777766666443333
No 95
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=26.92 E-value=3.2e+02 Score=26.46 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=9.5
Q ss_pred CChHHHHHHHHHHhhHh
Q 008368 148 GNYDEALDLEAYVCKLS 164 (568)
Q Consensus 148 ~~YeeAl~l~~~~~~ll 164 (568)
+.|+.+..-|.+.++++
T Consensus 159 ~~y~~~~~~wrk~krmf 175 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKRMF 175 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35666666666555443
No 96
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=26.91 E-value=1.7e+02 Score=24.63 Aligned_cols=56 Identities=18% Similarity=0.375 Sum_probs=38.8
Q ss_pred hhcCCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhh
Q 008368 32 LLSFTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 32 L~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~ 98 (568)
|+.+-+++|+.+...|..++..+.++-.+|.-+|+. ++..-..-.+.+..|+..|.
T Consensus 22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~q-----------Lk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNH-----------LKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHhhc
Confidence 566778888888888888888888888888877764 44555555555555555443
No 97
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=26.88 E-value=9.9e+02 Score=27.28 Aligned_cols=159 Identities=16% Similarity=0.246 Sum_probs=92.4
Q ss_pred CChHHHHHHh----hcCCHHHHhcchHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhHhh----hhhhHh
Q 008368 23 LSQQPYVSEL----LSFTLDRLHKEPELLRVDAERIQRQMQEVAV---GNYRAFIAAADALLAIREEVSS----IDKHLD 91 (568)
Q Consensus 23 ~~~~~Yl~~L----~s~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy---~NY~~FI~atdti~~m~~~~~~----~e~~~~ 91 (568)
|+++.|.++. .+..+++.-..-.....+++.+..+++.|+. +|-...-.+-+-.++++.++-. +++.+.
T Consensus 88 feAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~ 167 (570)
T COG4477 88 FEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAP 167 (570)
T ss_pred HHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Confidence 4555555552 2255666666777778888888888888886 6888888888888888887755 566667
Q ss_pred HHHhhhhhhhhhhhHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhH
Q 008368 92 SMITEIPKLTSGCTEFIES--------AEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKL 163 (568)
Q Consensus 92 ~L~~~l~~i~~~~~~fs~~--------~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~l 163 (568)
.|.+.|.+|.+..+.|..- +..++..-......|... +=.+|.++..|=. .-.++--++-...+.+
T Consensus 168 ~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~-----~e~IP~L~~e~~~-~lP~ql~~Lk~Gyr~m 241 (570)
T COG4477 168 ELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSI-----MERIPSLLAELQT-ELPGQLQDLKAGYRDM 241 (570)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHh-hchHHHHHHHHHHHHH
Confidence 7777787777777777552 334444433333333221 2245666666532 2222222232233333
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 008368 164 STLHPKLPIIQALAAEVKQTTQSLLSQLL 192 (568)
Q Consensus 164 l~~~~~~p~~~~I~~ev~~~~~~l~~~L~ 192 (568)
....=+.+ .-+++.+++.|.++|.
T Consensus 242 ~~~gY~l~-----~~~id~~~~~L~~~l~ 265 (570)
T COG4477 242 KEEGYHLE-----HVNIDSRLERLKEQLV 265 (570)
T ss_pred HHccCCcc-----cccHHHHHHHHHHHHH
Confidence 33211222 1346666666666655
No 98
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=26.15 E-value=89 Score=20.55 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.1
Q ss_pred HHHHcCChHHHHHHHHHHhhHh
Q 008368 143 TCVRNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll 164 (568)
.+...|+|++|++.+.++-.+-
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 10 AYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHhCCchHHHHHHHHHHHHC
Confidence 4567899999999999887653
No 99
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=26.02 E-value=87 Score=24.78 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.4
Q ss_pred HHHcCChHHHHHHHHHHhhHhhcCCC
Q 008368 144 CVRNGNYDEALDLEAYVCKLSTLHPK 169 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll~~~~~ 169 (568)
..+.|+|++|++++.++-.+.+.+++
T Consensus 15 ~~~~~~~~~A~~~~~~al~~~~~~~~ 40 (78)
T PF13424_consen 15 YRELGRYDEALDYYEKALDIEEQLGD 40 (78)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence 45789999999999999999777765
No 100
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=25.97 E-value=1e+02 Score=20.09 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.8
Q ss_pred HHHHcCChHHHHHHHHHHhhHhh
Q 008368 143 TCVRNGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll~ 165 (568)
.....|+|++|++.+.++..+-.
T Consensus 10 ~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 10 IYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 35678999999999999887654
No 101
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.84 E-value=4.3e+02 Score=23.16 Aligned_cols=16 Identities=31% Similarity=0.096 Sum_probs=7.2
Q ss_pred HHHHHHHHHhHHHHHH
Q 008368 118 RKMNQMLLANHSTLLD 133 (568)
Q Consensus 118 rr~~~~~L~~~~~Ll~ 133 (568)
-+.-...+...+++++
T Consensus 81 ~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 81 LKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444455554
No 102
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=25.64 E-value=73 Score=20.49 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=16.8
Q ss_pred HHHcCChHHHHHHHHHHhhHhhcCCC
Q 008368 144 CVRNGNYDEALDLEAYVCKLSTLHPK 169 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll~~~~~ 169 (568)
..+.|+|++|++.+.. +..+||+
T Consensus 10 ~~~~g~~~~A~~~~~~---~~~~~P~ 32 (33)
T PF13174_consen 10 YYKLGDYDEAIEYFQR---LIKRYPD 32 (33)
T ss_dssp HHHHCHHHHHHHHHHH---HHHHSTT
T ss_pred HHHccCHHHHHHHHHH---HHHHCcC
Confidence 4567999999998754 5566665
No 103
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=25.21 E-value=97 Score=20.08 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=16.7
Q ss_pred HHHHcCChHHHHHHHHHHhhHh
Q 008368 143 TCVRNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll 164 (568)
.+-..|+|++|++.+.++-.+.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 10 AYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHhCCHHHHHHHHHHHHHHC
Confidence 3467899999999998887654
No 104
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.03 E-value=7.7e+02 Score=25.36 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhh
Q 008368 56 RQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSG 103 (568)
Q Consensus 56 ~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~ 103 (568)
.+++.-+-.+-..--.+.+-+..++..+..+...+++|......+...
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~ 245 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQ 245 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhh
Confidence 344444444555555556666666666666666665555544444433
No 105
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.99 E-value=1.4e+03 Score=28.53 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHhHHHHHHHhhhhc
Q 008368 219 EYEMRLQFLRCREAWLTGILEDLD 242 (568)
Q Consensus 219 E~~Lr~~FL~~R~~~L~~~L~~l~ 242 (568)
+-.-+..||......+......+.
T Consensus 974 ~~~~r~~~l~~~~~dl~~a~~~l~ 997 (1163)
T COG1196 974 EVEERYEELKSQREDLEEAKEKLL 997 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788877777777666553
No 106
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.99 E-value=6.5e+02 Score=31.41 Aligned_cols=115 Identities=15% Similarity=0.174 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHH-hhHhhcCCCChHHHHHHHHHHHHHH--------HHHHHHHHHhccCCChhHHHHHHHHhhh-cCCC
Q 008368 148 GNYDEALDLEAYV-CKLSTLHPKLPIIQALAAEVKQTTQ--------SLLSQLLQKLRSNIQLPECLRIIGYLRR-IGVF 217 (568)
Q Consensus 148 ~~YeeAl~l~~~~-~~ll~~~~~~p~~~~I~~ev~~~~~--------~l~~~L~~~L~~~l~L~~~~r~V~~Lrr-L~~~ 217 (568)
++|+.+....+.+ ..+..+|+...++..|.+++-.... .-....+.+|. .+-+.-+++-++.|.. ++..
T Consensus 246 ~~fehl~~~~ad~v~l~~sky~~~sl~~~Iir~I~~~~~~~~d~~g~k~v~~fL~elS-~~~P~l~~~~l~~lv~lld~e 324 (1251)
T KOG0414|consen 246 RYFEHLAVHVADAVTLVRSKYGSVSLAGNIIRSIGSPEPNEKDCAGPKIVGNFLVELS-ERVPKLMLRQLTLLVDLLDSE 324 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhcccchhcccccchhhHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCc
Confidence 5666666666654 3445778888888777775543221 12223333332 1223345566666666 5554
Q ss_pred ChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHH-HHHHHHHHHHHH
Q 008368 218 SEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKG-MINCHRMHLFDV 264 (568)
Q Consensus 218 ~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r-~ie~~R~~lfdi 264 (568)
+ ..+|-.+++.......+.+.+-+.+....-+.. ++|++++|++|+
T Consensus 325 s-~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv 371 (1251)
T KOG0414|consen 325 S-YTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV 371 (1251)
T ss_pred h-HHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 4 678999999888777777765443333333443 777777777664
No 107
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.80 E-value=4.7e+02 Score=25.80 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHh
Q 008368 140 LMDTCVRNGNYDEALDLEAYVC 161 (568)
Q Consensus 140 lL~~cI~~~~YeeAl~l~~~~~ 161 (568)
..-.||++|+|++|.+...+.-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHh
Confidence 4568999999999999876643
No 108
>PHA03395 p10 fibrous body protein; Provisional
Probab=23.53 E-value=3.3e+02 Score=23.39 Aligned_cols=34 Identities=15% Similarity=0.416 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhh
Q 008368 68 AFIAAADALLAIREEVSSIDKHLDSMITEIPKLT 101 (568)
Q Consensus 68 ~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~ 101 (568)
.|...-+.|+.+..+++.+...++.+..++|.++
T Consensus 5 ILl~Ir~dIkavd~KVdalQ~~V~~l~~nlpdv~ 38 (87)
T PHA03395 5 ILLLIRQDIKAVSDKVDALQAAVDDVRANLPDVT 38 (87)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcHH
Confidence 3455556777777777777777777778887665
No 109
>PF04924 Pox_A6: Poxvirus A6 protein ; InterPro: IPR007008 This is a family of poxvirus A6 proteins have no known function.
Probab=22.81 E-value=6.1e+02 Score=27.14 Aligned_cols=85 Identities=14% Similarity=0.288 Sum_probs=58.1
Q ss_pred HHHHHhccCC--ChhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHH---HH
Q 008368 190 QLLQKLRSNI--QLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLF---DV 264 (568)
Q Consensus 190 ~L~~~L~~~l--~L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~yl~r~ie~~R~~lf---di 264 (568)
.+...++.|- =....+|+++.+.++...+-+.-..+-|+....++-..+..+- +.+-|+-++|-+|-..+. +-
T Consensus 120 ~MY~niKqDT~eIV~DsKKI~eIv~~ik~a~~e~~aykiLq~n~sFivktiNKvl--SDeNYllKiIAvFds~LvtDK~K 197 (371)
T PF04924_consen 120 NMYSNIKQDTEEIVSDSKKIMEIVSQIKNANCENQAYKILQNNYSFIVKTINKVL--SDENYLLKIIAVFDSDLVTDKEK 197 (371)
T ss_pred HHHHHHhcCHHHHHHhHHHHHHHHHHHHcccCchHHHHHHHhcchhHHHHHHHHh--cchhhHHHHHHHHhhhhhhchhh
Confidence 4444555432 2455666666666665444356778889999888888876543 234599999999976664 56
Q ss_pred HHHHHHhCCCCC
Q 008368 265 VNQYRAIFADDT 276 (568)
Q Consensus 265 vtqY~aiF~~~~ 276 (568)
+++|+.||.=++
T Consensus 198 L~EYreiftiS~ 209 (371)
T PF04924_consen 198 LEEYREIFTIST 209 (371)
T ss_pred HHHHHHHHhhhH
Confidence 789999997664
No 110
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=22.79 E-value=1.5e+02 Score=21.15 Aligned_cols=30 Identities=30% Similarity=0.215 Sum_probs=22.2
Q ss_pred HHHHHcCChHHHHHHHHHHhhHhhcCCCChHHH
Q 008368 142 DTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQ 174 (568)
Q Consensus 142 ~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~ 174 (568)
+...+.|++++|.++|..+- +.+|+.+-..
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l---~~~P~~~~a~ 38 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL---ALDPDDPEAW 38 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH---HHCcCCHHHH
Confidence 45678999999999987654 4567776543
No 111
>PHA02557 22 prohead core protein; Provisional
Probab=22.34 E-value=7.8e+02 Score=25.49 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=49.8
Q ss_pred hHHHHHHhhcCCHH--HHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHhhhhhhHhHHHhhhhhhh
Q 008368 25 QQPYVSELLSFTLD--RLHKEPELLRVDAERIQRQMQEVAVGNYRAFIA-AADALLAIREEVSSIDKHLDSMITEIPKLT 101 (568)
Q Consensus 25 ~~~Yl~~L~s~sL~--~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~-atdti~~m~~~~~~~e~~~~~L~~~l~~i~ 101 (568)
++.||+++...=+. .+--+...=..=..++-..|+++..+||=++=. .-|.+..|...++.++..+..+.+...++.
T Consensus 89 vd~~l~~~~~eW~~ENk~Av~~~IKaem~Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~ 168 (271)
T PHA02557 89 ADKYLDHLAKEWLAENKLAVDRGIKAELFESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFEENVALE 168 (271)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788877652111 111122222223345667788887777755543 347889999999999999988887776666
Q ss_pred hh
Q 008368 102 SG 103 (568)
Q Consensus 102 ~~ 103 (568)
+.
T Consensus 169 e~ 170 (271)
T PHA02557 169 EY 170 (271)
T ss_pred HH
Confidence 44
No 112
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.82 E-value=1.2e+03 Score=26.55 Aligned_cols=120 Identities=15% Similarity=0.288 Sum_probs=79.1
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhHhh----hhhhHhHHHhhhhhhhhhhhHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAV---GNYRAFIAAADALLAIREEVSS----IDKHLDSMITEIPKLTSGCTEF 107 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy---~NY~~FI~atdti~~m~~~~~~----~e~~~~~L~~~l~~i~~~~~~f 107 (568)
..+.++...-+.+..+++.+..++..|.- +|-...-...+..+.++..+.. ++...+.|.+.+..+......|
T Consensus 101 ~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 101 QAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEF 180 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Confidence 44555555666777788888888888775 6777788888888888887755 6666777888888888777777
Q ss_pred HHHH--HHHHHHHHHHHHHHHhHHHHHH-HhcchHHHHHHHHcCChHHHHHH
Q 008368 108 IESA--EEILEKRKMNQMLLANHSTLLD-LLEIPQLMDTCVRNGNYDEALDL 156 (568)
Q Consensus 108 s~~~--~~il~~rr~~~~~L~~~~~Ll~-LlELP~lL~~cI~~~~YeeAl~l 156 (568)
..-. ++-++.+......-.....|-+ +=.+|.++..|- +.|.+.++-
T Consensus 181 ~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~--~~~P~ql~e 230 (560)
T PF06160_consen 181 EELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQ--KEFPDQLEE 230 (560)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhHHHHHH
Confidence 6533 2334444444444444455555 556898888874 334444433
No 113
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=21.71 E-value=5.4e+02 Score=29.54 Aligned_cols=19 Identities=11% Similarity=-0.104 Sum_probs=12.7
Q ss_pred CChHHHHHHHHHHhhHhhc
Q 008368 148 GNYDEALDLEAYVCKLSTL 166 (568)
Q Consensus 148 ~~YeeAl~l~~~~~~ll~~ 166 (568)
++++.++.+|..++++..+
T Consensus 292 ~~~~~~~~~y~~~~p~i~~ 310 (555)
T TIGR03545 292 KYLQKFLKYYDQAEPLLNK 310 (555)
T ss_pred HHHHHHHHHHHHHhHhhcc
Confidence 4566777777777766654
No 114
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.49 E-value=7.1e+02 Score=25.10 Aligned_cols=83 Identities=16% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 008368 38 DRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEK 117 (568)
Q Consensus 38 ~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~ 117 (568)
+.+++|...+...++.+|..+.. =..+-+....=+..|..+.+++..+.+.+|.|. .. ...|..+
T Consensus 142 e~~lkE~~~in~s~~~vde~Is~--------A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN----~L---l~kIk~k 206 (231)
T KOG3208|consen 142 EMYLKEHDHINNSIRLVDELISQ--------AQATRENLHSQRSVLGGINNKVNNIANRFPAIN----QL---LQKIKIK 206 (231)
T ss_pred HHHHHHhccccchHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHH----HH---HHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHh
Q 008368 118 RKMNQMLLANHSTLLDLL 135 (568)
Q Consensus 118 rr~~~~~L~~~~~Ll~Ll 135 (568)
|++....|..+-.+.-||
T Consensus 207 krrdslILa~Vis~C~ll 224 (231)
T KOG3208|consen 207 KRRDSLILAAVISVCTLL 224 (231)
T ss_pred hhhhhHHHHHHHHHHHHH
No 115
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=21.33 E-value=1.3e+03 Score=26.65 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=20.2
Q ss_pred HhcchHHHHHHHHcCChHHHHHHHHHH
Q 008368 134 LLEIPQLMDTCVRNGNYDEALDLEAYV 160 (568)
Q Consensus 134 LlELP~lL~~cI~~~~YeeAl~l~~~~ 160 (568)
++++-..+-..++.|+.+-+++++.-+
T Consensus 180 vl~~~~~iie~vksghi~~~~~ifkIv 206 (742)
T COG5173 180 VLEISEEIIENVKSGHIEAMDKIFKIV 206 (742)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 677777777788888888887776443
No 116
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.31 E-value=1.1e+03 Score=25.66 Aligned_cols=38 Identities=16% Similarity=0.416 Sum_probs=23.9
Q ss_pred chhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 008368 336 DFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRW 373 (568)
Q Consensus 336 DF~~ll~~l~~~~~~~~f~~~~~~a~~~f~~~l~~~~w 373 (568)
.|.+.|...|+.++.-.+...=+.-.+.+...+...+|
T Consensus 346 ~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 346 NFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred ccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 79999999999988644443323333344444455666
No 117
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.21 E-value=1.3e+03 Score=26.45 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HHhHH-----------HHH
Q 008368 65 NYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEILEKRKMNQML-LANHS-----------TLL 132 (568)
Q Consensus 65 NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il~~rr~~~~~-L~~~~-----------~Ll 132 (568)
+.-.|..|...+..+...++.++..+..+.+.+..|...-+.=...+..+...-+..... |.+.. +|-
T Consensus 96 ~~~~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~ 175 (569)
T PRK04778 96 DKFRFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLE 175 (569)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence 445799999999999999999999999999999888755444344444444443322222 22211 111
Q ss_pred HHhcchHHHHHHHHcCChHHHHHHHHHHhhHhh----cCCCCh-HHHHHHHHHHHHHHHHHHHHHHHh
Q 008368 133 DLLEIPQLMDTCVRNGNYDEALDLEAYVCKLST----LHPKLP-IIQALAAEVKQTTQSLLSQLLQKL 195 (568)
Q Consensus 133 ~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~----~~~~~p-~~~~I~~ev~~~~~~l~~~L~~~L 195 (568)
.+=+-=......-.+|+|.+|-+.+..++.-.. ....+| +++.+..+.=..+..+..+-.+..
T Consensus 176 ~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~ 243 (569)
T PRK04778 176 NLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELV 243 (569)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 122222344556678999999999888765443 233454 344444444444555555543333
No 118
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=21.13 E-value=2e+02 Score=32.95 Aligned_cols=52 Identities=17% Similarity=0.115 Sum_probs=36.7
Q ss_pred HHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008368 143 TCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQK 194 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~ 194 (568)
-|-|.++|-||+..|+.+..+..+|.-..==-.|++|.-++...|+-++++.
T Consensus 327 ~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLiP~~lk~ 378 (618)
T PF05053_consen 327 YYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELIPNVLKS 378 (618)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999998664444566777666666666555444
No 119
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=21.03 E-value=1.1e+03 Score=25.70 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=36.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHH
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLS 189 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~ 189 (568)
.+..+-.++.+-|+.+..++...+.+. +-|.+..|++.+..-+..|+.
T Consensus 144 ~rkL~l~~DV~TAv~lLk~aD~~La~~-NdP~l~~~R~Aia~Dia~Lka 191 (391)
T COG2959 144 GRKLVLDQDVTTAVALLKSADARLAAM-NDPSLIAVRRAIANDIAALKA 191 (391)
T ss_pred HHHHhhccchHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHhc
Confidence 356677899999999999998877765 457777777777766666554
No 120
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.94 E-value=4.8e+02 Score=32.12 Aligned_cols=76 Identities=17% Similarity=0.243 Sum_probs=53.0
Q ss_pred CHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHHH
Q 008368 36 TLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEIL 115 (568)
Q Consensus 36 sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~il 115 (568)
.++.|.+....+..++..+ .+|+. .|-.+|-..-+.+..++..+..+.+++..|...|..+.+..+.+.....++|
T Consensus 822 ~~~~~~~~e~~~~k~i~e~-~~~e~---k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i~~~es~ie~~~~er~~lL 897 (1141)
T KOG0018|consen 822 EIEGLKKDEEAAEKIIAEI-EELEK---KNKSKFEKKEDEINEVKKILRRLVKELTKLDKEITSIESKIERKESERHNLL 897 (1141)
T ss_pred hHHhhHHHHHHHHHHHhhH-HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 3444444444444566666 66666 7788898888999999999999999998888888888766555544444443
No 121
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=20.92 E-value=3.9e+02 Score=29.02 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=41.7
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHH---------------HHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhh
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQM---------------QEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEI 97 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~l---------------q~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l 97 (568)
..+.++..+-+..+.+.+.++..+ -.|..++|+.++...|.+..++.++......+.....-+
T Consensus 214 ~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~~~~~Ll 291 (377)
T PF14728_consen 214 QELKELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLSCATQLL 291 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 444455445555555555555444 477788888888888888888888888777665544433
No 122
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.41 E-value=9.7e+02 Score=24.82 Aligned_cols=106 Identities=16% Similarity=0.324 Sum_probs=52.9
Q ss_pred CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhhhhHHHHHHHHH
Q 008368 35 FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSIDKHLDSMITEIPKLTSGCTEFIESAEEI 114 (568)
Q Consensus 35 ~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~~~~fs~~~~~i 114 (568)
..+.++.++-..++.++.+|+.++.++ ..-+...+..++....+|..|...|..+.+. ...-+.+
T Consensus 38 s~l~~~~~~~~~~q~ei~~L~~qi~~~-----------~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~----I~~r~~~ 102 (265)
T COG3883 38 SKLSELQKEKKNIQNEIESLDNQIEEI-----------QSKIDELQKEIDQSKAEIKKLQKEIAELKEN----IVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 445555566666666666666665544 2223344444444444444444444444422 1223456
Q ss_pred HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHh
Q 008368 115 LEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 115 l~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll 164 (568)
+.+|-+...+=.....- |+..+....|.+.+.-..-+..+.
T Consensus 103 l~~raRAmq~nG~~t~Y---------idvil~SkSfsD~IsRvtAi~~iv 143 (265)
T COG3883 103 LKKRARAMQVNGTATSY---------IDVILNSKSFSDLISRVTAISVIV 143 (265)
T ss_pred HHHHHHHHHHcCChhHH---------HHHHHccCcHHHHHHHHHHHHHHH
Confidence 66666654432222222 444455666666666555555444
No 123
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=20.25 E-value=6.3e+02 Score=22.57 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=29.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHH
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSL 187 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l 187 (568)
.-|++|-|-++|.-|++.++-++-=..... .+-.-|.+|+.-.+..|
T Consensus 50 aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lqElkPtl~EL 96 (108)
T PF02284_consen 50 AALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQELKPTLEEL 96 (108)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHHHHhhHHHHh
Confidence 457889999999999999888774433221 14555555555544444
No 124
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.11 E-value=5.1e+02 Score=21.50 Aligned_cols=38 Identities=5% Similarity=0.208 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhh
Q 008368 49 VDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSI 86 (568)
Q Consensus 49 ~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~ 86 (568)
.+++.--.+.++.+.+|.++.++-.+.+..+...-+.|
T Consensus 6 ~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L 43 (89)
T PF00957_consen 6 EQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEEL 43 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 56666677788888888888888887777665544444
Done!