Query 008368
Match_columns 568
No_of_seqs 229 out of 417
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 99.9 6.1E-22 2.1E-26 196.9 23.4 213 128-350 12-232 (235)
2 2jqq_A Conserved oligomeric go 70.7 20 0.0007 33.6 9.2 110 76-189 49-174 (204)
3 2b1e_A Exocyst complex compone 57.8 2.1E+02 0.0073 31.0 16.2 97 201-304 120-229 (564)
4 1deq_A Fibrinogen (alpha chain 48.4 2E+02 0.007 29.7 12.8 52 35-86 52-104 (390)
5 2crb_A Nuclear receptor bindin 41.0 21 0.00071 29.8 3.4 25 141-165 22-46 (97)
6 2w2u_A Hypothetical P60 katani 40.5 53 0.0018 26.5 5.8 39 146-184 31-73 (83)
7 2v6y_A AAA family ATPase, P60 40.3 49 0.0017 26.6 5.6 39 146-184 23-65 (83)
8 1wfd_A Hypothetical protein 15 38.8 94 0.0032 25.4 7.2 20 146-165 27-46 (93)
9 4a5x_A MITD1, MIT domain-conta 38.0 1E+02 0.0035 24.9 7.2 39 146-184 28-70 (86)
10 3bqo_A Telomeric repeat-bindin 36.7 1.1E+02 0.0037 29.0 8.0 70 140-209 123-208 (211)
11 2v6x_A Vacuolar protein sortin 35.8 89 0.0031 24.9 6.5 19 146-164 25-43 (85)
12 2vxg_A LD41624, GE-1, CG6181-P 35.0 2.4E+02 0.0081 24.9 11.0 97 139-260 5-107 (139)
13 3lpz_A GET4 (YOR164C homolog); 34.2 3.9E+02 0.013 27.1 14.5 95 141-249 42-139 (336)
14 2w6a_A ARF GTPase-activating p 31.5 99 0.0034 23.4 5.4 51 17-67 2-59 (63)
15 2cpt_A SKD1 protein, vacuolar 31.3 1.2E+02 0.0042 25.9 7.0 19 147-165 31-49 (117)
16 1txp_A HnRNP C, heterogeneous 28.0 31 0.0011 22.1 1.8 25 77-101 2-26 (28)
17 3mtu_E Head morphogenesis prot 27.8 1.3E+02 0.0043 24.1 5.8 32 72-103 28-59 (77)
18 2yy0_A C-MYC-binding protein; 27.2 45 0.0015 24.7 2.9 40 24-63 2-47 (53)
19 3qwp_A SET and MYND domain-con 27.0 67 0.0023 33.6 5.5 47 141-187 378-426 (429)
20 1jcd_A Major outer membrane li 26.1 1.6E+02 0.0054 21.7 5.7 21 78-98 8-28 (52)
21 3qww_A SET and MYND domain-con 25.7 3.5E+02 0.012 28.1 10.9 42 140-181 388-431 (433)
22 1nzn_A CGI-135 protein, fissio 25.3 1.1E+02 0.0039 26.6 5.7 39 144-185 84-122 (126)
23 3upv_A Heat shock protein STI1 24.9 66 0.0023 25.9 4.1 31 142-172 80-110 (126)
24 2xcb_A PCRH, regulatory protei 24.5 1.2E+02 0.0041 25.2 5.8 43 143-188 95-137 (142)
25 1qu7_A Methyl-accepting chemot 22.6 4.9E+02 0.017 24.5 13.1 9 55-63 121-129 (227)
26 3ma5_A Tetratricopeptide repea 22.3 1E+02 0.0035 24.1 4.6 29 143-171 50-78 (100)
27 3re2_A Predicted protein; meni 22.0 1.8E+02 0.006 30.3 7.1 50 145-194 307-356 (472)
28 2wpv_A GET4, UPF0363 protein Y 22.0 3.9E+02 0.014 26.7 9.9 93 141-247 40-135 (312)
29 3ghg_A Fibrinogen alpha chain; 21.9 6.2E+02 0.021 27.3 11.5 32 35-67 49-81 (562)
30 3haj_A Human pacsin2 F-BAR; pa 21.7 7.1E+02 0.024 26.1 14.9 66 36-101 82-156 (486)
31 4gco_A Protein STI-1; structur 21.6 2.8E+02 0.0097 22.5 7.6 21 143-163 22-42 (126)
32 1m1j_C Fibrinogen gamma chain; 21.5 3.9E+02 0.013 27.9 9.9 68 23-90 23-100 (409)
33 3o48_A Mitochondria fission 1 21.3 1.5E+02 0.005 26.2 5.6 40 144-186 88-127 (134)
34 1m1j_A Fibrinogen alpha subuni 20.9 7.6E+02 0.026 26.2 11.7 52 35-86 50-102 (491)
35 2rpa_A Katanin P60 ATPase-cont 20.4 1E+02 0.0035 24.6 4.1 28 139-166 17-44 (78)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=99.89 E-value=6.1e-22 Score=196.86 Aligned_cols=213 Identities=16% Similarity=0.200 Sum_probs=181.2
Q ss_pred HHHHHHHhcchHHHHHHHHcCChHHHHHHHHHHhhHhhcCCC------ChHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Q 008368 128 HSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPK------LPIIQALAAEVKQTTQSLLSQLLQKLRSNIQL 201 (568)
Q Consensus 128 ~~~Ll~LlELP~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~------~p~~~~I~~ev~~~~~~l~~~L~~~L~~~l~L 201 (568)
.+.+-|+-+.|..||.||..++|++|+++..+++.++...++ ......|...++++...|.+.|...+.....+
T Consensus 12 ~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~~ 91 (235)
T 2d2s_A 12 AQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNEI 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSH
T ss_pred chhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 356778999999999999999999999999999999987653 45577788999999999999999999777789
Q ss_pred hHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCC
Q 008368 202 PECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLD-QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD-TSGS 279 (568)
Q Consensus 202 ~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~-~~~~~~yl~r~ie~~R~~lfdivtqY~aiF~~~-~~~~ 279 (568)
.++++.|.+|.|||.. ++++..||++|..+++..++++. .+|+..|+.+++.+||..+.+|+..|.++|++. ...
T Consensus 92 ~~~r~~v~~L~rLg~~--~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~- 168 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLP--EQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKI- 168 (235)
T ss_dssp HHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH-
T ss_pred HHHHHHHHHHHHCCCh--hHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-
Confidence 9999999999999985 79999999999999999999984 468999999999999999999999999999983 232
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHhcCCCCCCCChhHHHHHHHHHHhhhhhcccchhhhcchHHHHHHH
Q 008368 280 EENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVL 350 (568)
Q Consensus 280 ~~~~~~s~l~~w~~~~v~~fl~~L~~~L~~i~~~~sL~sll~Q~~y~~~SL~rvG~DF~~ll~~l~~~~~~ 350 (568)
.|.|+.|+.+++..|..++++|+.. +++-...-+..+.-.|..|..+|+||+++|..++...+.
T Consensus 169 -----~S~lV~Wa~~eve~f~~l~~rqv~~--~~~l~~ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~ 232 (235)
T 2d2s_A 169 -----SSILVDWCSDEVDNHFKLIDKQLLN--DEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD 232 (235)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGG
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHccC--CccHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHh
Confidence 6789999999999999999999974 222222223333344688999999999999999876543
No 2
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=70.71 E-value=20 Score=33.61 Aligned_cols=110 Identities=19% Similarity=0.206 Sum_probs=72.6
Q ss_pred HHHHHHhHhhhhhhHhHHHh-hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHc--C--Ch
Q 008368 76 LLAIREEVSSIDKHLDSMIT-EIPKLTSGCTEFIESAEEILEKRKMNQMLLANHSTLLDLLEIPQLMDTCVRN--G--NY 150 (568)
Q Consensus 76 i~~m~~~~~~~e~~~~~L~~-~l~~i~~~~~~fs~~~~~il~~rr~~~~~L~~~~~Ll~LlELP~lL~~cI~~--~--~Y 150 (568)
+.+++.++..+.+.+..|.. .|++-++. ...+=+-+++-......|.+|..|-+.+.+-..|-+|... | .-
T Consensus 49 LQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~----v~d~l~YLkkLD~l~~~Lq~h~~Lse~l~l~kqLs~sLh~mC~~~pl 124 (204)
T 2jqq_A 49 LEKTQSDLQKFMTQLDHLIKDDISNTQEI----IKDVLEYLKKLDEIYGSLRNHSQLTEALSLGKRLSKSLHEMCGIEPL 124 (204)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSCSTTHHH----HHHHHHHHHHHHHHHHTCSSSSHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 45566777777778877774 66665522 3344455788888888899999999999999998888653 2 22
Q ss_pred ------HHHHHHHH---HHhhHhhcCC--CChHHHHHHHHHHHHHHHHHH
Q 008368 151 ------DEALDLEA---YVCKLSTLHP--KLPIIQALAAEVKQTTQSLLS 189 (568)
Q Consensus 151 ------eeAl~l~~---~~~~ll~~~~--~~p~~~~I~~ev~~~~~~l~~ 189 (568)
+-+.++|. ++..++.... +.|.+..++.+-...++....
T Consensus 125 d~eLc~~l~~qL~~L~~~~~~ll~~l~dl~Sp~l~h~RN~yq~i~q~Fqi 174 (204)
T 2jqq_A 125 EEEICSGLIEQLYKLITASRRILESCADSNSPYIHHLRNDYQDLLQEFQI 174 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 33344443 3445555443 568888888877777666543
No 3
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=57.77 E-value=2.1e+02 Score=31.02 Aligned_cols=97 Identities=12% Similarity=0.053 Sum_probs=60.8
Q ss_pred hhHHHHHHHHhhhcCCCChHHHHHHHHHHhHHHHHHHhhhhccc--------C-HH----HHHHHHHHHHHHHHHHHHHH
Q 008368 201 LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQK--------N-AY----EYLKGMINCHRMHLFDVVNQ 267 (568)
Q Consensus 201 L~~~~r~V~~LrrL~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~--------~-~~----~yl~r~ie~~R~~lfdivtq 267 (568)
+.....+..|+.+.|.. .+....|-..|..+|...|..+... + ++ .-+.+|++++...+..=-.-
T Consensus 120 l~~L~~Ia~~m~~~g~~--~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~~~l~~~E~~L 197 (564)
T 2b1e_A 120 LGALSWILDYFHGNSEG--SIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEALLGFIANEKSL 197 (564)
T ss_dssp HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHHHHHHHHHHHH
Confidence 35666777888877653 6788899999999999998865310 0 11 23456666664333332333
Q ss_pred HHHhCCCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 008368 268 YRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLK 304 (568)
Q Consensus 268 Y~aiF~~~~~~~~~~~~~s~l~~w~~~~v~~fl~~L~ 304 (568)
...||+..... ....|..-+...+..|..+++
T Consensus 198 ~~~vf~~~~~~-----~~~~f~~i~~~~l~~~~~~l~ 229 (564)
T 2b1e_A 198 VDDLYSQYTES-----KPHVLSQILSPLISAYAKLFG 229 (564)
T ss_dssp HHHHSCTTCTT-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchh-----hHHHHHHHHHHHHHHHHHHHH
Confidence 56899874211 145677777777776666655
No 4
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.37 E-value=2e+02 Score=29.71 Aligned_cols=52 Identities=4% Similarity=0.061 Sum_probs=37.4
Q ss_pred CCHHHHh-cchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhh
Q 008368 35 FTLDRLH-KEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSI 86 (568)
Q Consensus 35 ~sL~~L~-~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~ 86 (568)
|-|..++ +...-+...|..|...+..+-..|-..|--...+...++..+...
T Consensus 52 CrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~ 104 (390)
T 1deq_A 52 CRMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKA 104 (390)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Confidence 6677775 444667788888888888887777777777777777777666654
No 5
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=41.02 E-value=21 Score=29.76 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhh
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~ 165 (568)
=+.|++.|.|+||+++..++-.++.
T Consensus 22 Ae~ll~~gkydeAIech~kAa~yL~ 46 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRKATTYLS 46 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4578899999999999999887763
No 6
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=40.47 E-value=53 Score=26.47 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=26.0
Q ss_pred HcCChHHHHHHHHHHhhHhh----cCCCChHHHHHHHHHHHHH
Q 008368 146 RNGNYDEALDLEAYVCKLST----LHPKLPIIQALAAEVKQTT 184 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~----~~~~~p~~~~I~~ev~~~~ 184 (568)
+.|+|++|+.+|..+-.++. ..++...-..|...+.+-+
T Consensus 31 ~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~ 73 (83)
T 2w2u_A 31 KEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYK 73 (83)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47999999999999866653 3466554444555555443
No 7
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.29 E-value=49 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=25.3
Q ss_pred HcCChHHHHHHHHHHhhHhh----cCCCChHHHHHHHHHHHHH
Q 008368 146 RNGNYDEALDLEAYVCKLST----LHPKLPIIQALAAEVKQTT 184 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~----~~~~~p~~~~I~~ev~~~~ 184 (568)
+.|+|++|+.+|..+-.++. ..++...-..|...+.+-+
T Consensus 23 ~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~ 65 (83)
T 2v6y_A 23 KEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYK 65 (83)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 47999999999999876653 2355554444555544433
No 8
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.83 E-value=94 Score=25.41 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.6
Q ss_pred HcCChHHHHHHHHHHhhHhh
Q 008368 146 RNGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~ 165 (568)
..|+|++|+.+|..+-.++.
T Consensus 27 ~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 27 AESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHH
Confidence 36999999999999876653
No 9
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=37.95 E-value=1e+02 Score=24.85 Aligned_cols=39 Identities=13% Similarity=-0.028 Sum_probs=24.2
Q ss_pred HcCChHHHHHHHHHHhhHhh---cC-CCChHHHHHHHHHHHHH
Q 008368 146 RNGNYDEALDLEAYVCKLST---LH-PKLPIIQALAAEVKQTT 184 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll~---~~-~~~p~~~~I~~ev~~~~ 184 (568)
..|+|++|+.+|..+-.++. ++ ++...-..|...|.+-+
T Consensus 28 ~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl 70 (86)
T 4a5x_A 28 SESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYM 70 (86)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 47999999999999876642 23 33333334554554443
No 10
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=36.68 E-value=1.1e+02 Score=29.04 Aligned_cols=70 Identities=16% Similarity=0.300 Sum_probs=39.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhh---------------HhhcCCCChHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhH
Q 008368 140 LMDTCVRNGNYDEALDLEAYVCK---------------LSTLHPKLPIIQAL-AAEVKQTTQSLLSQLLQKLRSNIQLPE 203 (568)
Q Consensus 140 lL~~cI~~~~YeeAl~l~~~~~~---------------ll~~~~~~p~~~~I-~~ev~~~~~~l~~~L~~~L~~~l~L~~ 203 (568)
-.-.||++|+|++|.+.+.+.-. +.++.+..|+++.. +.-..+.+.+..+..++.=.+.-=+.+
T Consensus 123 AV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqnFSy~~~~~kik~fve~~~~e~~~~FLl~a 202 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQHFSYNHMMEKIKSYVNYVLSEKSSTFLMKA 202 (211)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHHSCHHHHHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHHccHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence 46689999999999999887321 12455666766543 222233333333333333223334666
Q ss_pred HHHHHH
Q 008368 204 CLRIIG 209 (568)
Q Consensus 204 ~~r~V~ 209 (568)
|.|+|.
T Consensus 203 A~Kvve 208 (211)
T 3bqo_A 203 AAKVVE 208 (211)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666653
No 11
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=35.83 E-value=89 Score=24.88 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=16.1
Q ss_pred HcCChHHHHHHHHHHhhHh
Q 008368 146 RNGNYDEALDLEAYVCKLS 164 (568)
Q Consensus 146 ~~~~YeeAl~l~~~~~~ll 164 (568)
..|+|++|+.+|..+-.++
T Consensus 25 ~~g~y~eAl~~Y~~aie~l 43 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGLDYL 43 (85)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHH
Confidence 3699999999999987665
No 12
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=34.97 E-value=2.4e+02 Score=24.92 Aligned_cols=97 Identities=9% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---cCCChhHHHHHHHHhh-hc
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLR---SNIQLPECLRIIGYLR-RI 214 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~---~~l~L~~~~r~V~~Lr-rL 214 (568)
+.+..++.+|+|+||..-|-.+. +.++|..+...++-.. + |. .++...-.+-.+.-|- .|
T Consensus 5 ~~I~~Ll~~g~~eeAf~~aL~ss-------d~~lv~~lc~~~dp~~------~---~~~~~~~Lsq~vLLSLiqqls~dL 68 (139)
T 2vxg_A 5 DSIKQLLMAGQINKAFHQALLAN-------DLGLVEFTLRHTDSNQ------A---FAPEGCRLEQKVLLSLIQQISADM 68 (139)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT-------CHHHHHHHHHHSCHHH------H---TC----CCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHhC-------cHHHHHHHHHcCCHHH------h---cCCCCCCccHHHHHHHHHHHHHHh
Confidence 34788899999999999875543 4456666666555332 0 21 1222222222222221 12
Q ss_pred CCCChHHHHHHHHHHhHHHHHHHhhhhcccCH--HHHHHHHHHHHHHH
Q 008368 215 GVFSEYEMRLQFLRCREAWLTGILEDLDQKNA--YEYLKGMINCHRMH 260 (568)
Q Consensus 215 ~~~~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~--~~yl~r~ie~~R~~ 260 (568)
+.. .++ |-.||+..+.+++..|+ ..++.++.+.....
T Consensus 69 ~~~--~~~-------Kl~WLe~vl~aid~~dp~i~~~~p~Il~~l~~~ 107 (139)
T 2vxg_A 69 TNH--NEL-------KQRYLNEALLAINMADPITREHAPKVLTELYRN 107 (139)
T ss_dssp TTC--CHH-------HHHHHHHHHHHCCTTSHHHHHHHHHHHHHHHHH
T ss_pred ccC--cHH-------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence 222 233 45677888888887775 56777777665433
No 13
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.20 E-value=3.9e+02 Score=27.13 Aligned_cols=95 Identities=17% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---cCCChhHHHHHHHHhhhcCCC
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLR---SNIQLPECLRIIGYLRRIGVF 217 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~---~~l~L~~~~r~V~~LrrL~~~ 217 (568)
-.+.+++++|++|+++.-.....+-+++...+-.+ |...|+.-+. .+.+-...-|++.+++.++..
T Consensus 42 ~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~D-----------L~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~ 110 (336)
T 3lpz_A 42 AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGD-----------LAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPG 110 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHH-----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Confidence 34568889999999987775555544444332222 2223333333 234445666788888887763
Q ss_pred ChHHHHHHHHHHhHHHHHHHhhhhcccCHHHH
Q 008368 218 SEYEMRLQFLRCREAWLTGILEDLDQKNAYEY 249 (568)
Q Consensus 218 ~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~~y 249 (568)
+.-|..|+...-.|=.+ ...-+.+++..|
T Consensus 111 --~p~r~~fi~~ai~WS~~-~g~~~~Gdp~LH 139 (336)
T 3lpz_A 111 --EPVRKRFVKEMIDWSKK-FGDYPAGDPELH 139 (336)
T ss_dssp --CHHHHHHHHHHHHHHHH-HSSCTTCCHHHH
T ss_pred --CcHHHHHHHHHHHHHhh-cCCCCCCCHHHH
Confidence 34578899888888765 333456677544
No 14
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=31.54 E-value=99 Score=23.43 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=36.6
Q ss_pred CCCCCCC--ChHHHHHH---hhc--CCHHHHhcchHHHHHHHHHHHHHHHHHHHhhHH
Q 008368 17 LLPLASL--SQQPYVSE---LLS--FTLDRLHKEPELLRVDAERIQRQMQEVAVGNYR 67 (568)
Q Consensus 17 ~~~l~s~--~~~~Yl~~---L~s--~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~ 67 (568)
|+++++- ..+.|+.- |.. ..+.+|++-...|..|++.+.+.+|+|--+|-+
T Consensus 2 ~~dlsDgpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~ 59 (63)
T 2w6a_A 2 PLGSSDGAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQ 59 (63)
T ss_dssp CCC--CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhh
Confidence 4555443 57788753 333 678888888888888999999999988888754
No 15
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=31.31 E-value=1.2e+02 Score=25.92 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHhhHhh
Q 008368 147 NGNYDEALDLEAYVCKLST 165 (568)
Q Consensus 147 ~~~YeeAl~l~~~~~~ll~ 165 (568)
.|+|++|+.+|..+-.++.
T Consensus 31 ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 31 AGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 5999999999999877653
No 16
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=28.04 E-value=31 Score=22.12 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=19.4
Q ss_pred HHHHHhHhhhhhhHhHHHhhhhhhh
Q 008368 77 LAIREEVSSIDKHLDSMITEIPKLT 101 (568)
Q Consensus 77 ~~m~~~~~~~e~~~~~L~~~l~~i~ 101 (568)
..|+..+..+...++.|+.++.++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4678888888888888888877654
No 17
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=27.83 E-value=1.3e+02 Score=24.11 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhHhhhhhhHhHHHhhhhhhhhh
Q 008368 72 AADALLAIREEVSSIDKHLDSMITEIPKLTSG 103 (568)
Q Consensus 72 atdti~~m~~~~~~~e~~~~~L~~~l~~i~~~ 103 (568)
-++.+..++.+..+++..++.|.+.+..-...
T Consensus 28 ~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK 59 (77)
T 3mtu_E 28 RTEALQQLRVNYGSFVSEYNDLEEKVAHAKEE 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 35667777888888888888888877655543
No 18
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.24 E-value=45 Score=24.72 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=24.8
Q ss_pred ChHHHHHHhhc------CCHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 008368 24 SQQPYVSELLS------FTLDRLHKEPELLRVDAERIQRQMQEVAV 63 (568)
Q Consensus 24 ~~~~Yl~~L~s------~sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy 63 (568)
++-.||.+-++ ..++.|..|...|+.++..|..+.++|.-
T Consensus 2 ~AlefIk~~LG~~~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 2 SALDFLKHHLGAATPENPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467766433 56788889999999999999999888764
No 19
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=27.01 E-value=67 Score=33.57 Aligned_cols=47 Identities=9% Similarity=0.155 Sum_probs=35.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhhc--CCCChHHHHHHHHHHHHHHHH
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLSTL--HPKLPIIQALAAEVKQTTQSL 187 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~~--~~~~p~~~~I~~ev~~~~~~l 187 (568)
=.....+|.|++|+.+|.+|-.+... -++.|.++.+.....+....|
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 34456799999999999999988764 368898888876666555444
No 20
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=26.14 E-value=1.6e+02 Score=21.74 Aligned_cols=21 Identities=5% Similarity=0.126 Sum_probs=8.9
Q ss_pred HHHHhHhhhhhhHhHHHhhhh
Q 008368 78 AIREEVSSIDKHLDSMITEIP 98 (568)
Q Consensus 78 ~m~~~~~~~e~~~~~L~~~l~ 98 (568)
.+..++..+..+++.|...+.
T Consensus 8 ~Lss~V~~L~~kVdqLssdV~ 28 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDAN 28 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 21
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=25.70 E-value=3.5e+02 Score=28.05 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=30.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhHhhc--CCCChHHHHHHHHHH
Q 008368 140 LMDTCVRNGNYDEALDLEAYVCKLSTL--HPKLPIIQALAAEVK 181 (568)
Q Consensus 140 lL~~cI~~~~YeeAl~l~~~~~~ll~~--~~~~p~~~~I~~ev~ 181 (568)
+=..+..+|+|++|+.+|.+|-.+..+ -++.|.++.+....+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 334456788999999999998887754 367788777766543
No 22
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=25.32 E-value=1.1e+02 Score=26.55 Aligned_cols=39 Identities=21% Similarity=0.254 Sum_probs=32.5
Q ss_pred HHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHH
Q 008368 144 CVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQ 185 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~ 185 (568)
|.+.|+|+.|+++ +..+++..|+.+-.+.+..-++..+.
T Consensus 84 ~yklg~Y~~A~~~---~~~lL~~eP~n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 84 NYRLKEYEKALKY---VRGLLQTEPQNNQAKELERLIDKAMK 122 (126)
T ss_dssp HHHTTCHHHHHHH---HHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHH---HHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 5678999999986 67788888999988888888887664
No 23
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=24.89 E-value=66 Score=25.87 Aligned_cols=31 Identities=10% Similarity=-0.053 Sum_probs=21.5
Q ss_pred HHHHHcCChHHHHHHHHHHhhHhhcCCCChH
Q 008368 142 DTCVRNGNYDEALDLEAYVCKLSTLHPKLPI 172 (568)
Q Consensus 142 ~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~ 172 (568)
..+...|+|++|+..+.++-.+...+++.|-
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~ 110 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKDAEVNNGSS 110 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCcccCCchh
Confidence 3456778999999998888777644444443
No 24
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=24.54 E-value=1.2e+02 Score=25.16 Aligned_cols=43 Identities=21% Similarity=0.143 Sum_probs=27.9
Q ss_pred HHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHH
Q 008368 143 TCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLL 188 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~ 188 (568)
.+...|+|++|+..+.++..+.. +.|-...+..++...+..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~l~~l~ 137 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAA---AQPAHEALAARAGAMLEAVT 137 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHH---TCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC---CCcchHHHHHHHHHHHHHHH
Confidence 45678999999999988877664 34444555555555444443
No 25
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=22.57 E-value=4.9e+02 Score=24.49 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 008368 55 QRQMQEVAV 63 (568)
Q Consensus 55 ~~~lq~Lvy 63 (568)
-.+++.++.
T Consensus 121 t~~I~~~i~ 129 (227)
T 1qu7_A 121 AREIKSLIE 129 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333444433
No 26
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=22.26 E-value=1e+02 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.047 Sum_probs=17.8
Q ss_pred HHHHcCChHHHHHHHHHHhhHhhcCCCCh
Q 008368 143 TCVRNGNYDEALDLEAYVCKLSTLHPKLP 171 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~ll~~~~~~p 171 (568)
.+...|+|++|++.|.++-.+....++..
T Consensus 50 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 50 LYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 34556777777777777666655444433
No 27
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.02 E-value=1.8e+02 Score=30.31 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=39.0
Q ss_pred HHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008368 145 VRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQK 194 (568)
Q Consensus 145 I~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~ 194 (568)
-|+++|-||+..|+.+..+.++|.-..==-+|++|.-++...++-++++.
T Consensus 307 yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIAneliP~~~k~ 356 (472)
T 3re2_A 307 YRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIANDLIPNILKD 356 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHHh
Confidence 57899999999999999999998765544477777777777666665553
No 28
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.99 E-value=3.9e+02 Score=26.66 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=54.2
Q ss_pred HHHHHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhc---cCCChhHHHHHHHHhhhcCCC
Q 008368 141 MDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLR---SNIQLPECLRIIGYLRRIGVF 217 (568)
Q Consensus 141 L~~cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~l~~~L~~~L~---~~l~L~~~~r~V~~LrrL~~~ 217 (568)
..+.+++++|++|+++.-.+...+-+++...+-.+ |...++.-+. .+..-...-|++.+++.++..
T Consensus 40 ~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~D-----------La~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTD-----------LIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-----------HHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHH-----------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 45678889999999997776555544444333222 2223333333 234555666777887777653
Q ss_pred ChHHHHHHHHHHhHHHHHHHhhhhcccCHH
Q 008368 218 SEYEMRLQFLRCREAWLTGILEDLDQKNAY 247 (568)
Q Consensus 218 ~E~~Lr~~FL~~R~~~L~~~L~~l~~~~~~ 247 (568)
+.-|..|+...-.|-.+.- .-+.+++.
T Consensus 109 --~~~r~~fi~~ai~WS~~~g-~~~~Gdp~ 135 (312)
T 2wpv_A 109 --EPNLKDVITGMNNWSIKFS-EYKFGDPY 135 (312)
T ss_dssp --CTTHHHHHHHHHHHHHHTS-SCTTCCHH
T ss_pred --CchHHHHHHHHHHHHhhcC-CCCCCCHH
Confidence 3447778887766655432 22345553
No 29
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=21.94 E-value=6.2e+02 Score=27.32 Aligned_cols=32 Identities=9% Similarity=0.120 Sum_probs=19.7
Q ss_pred CCHHHHh-cchHHHHHHHHHHHHHHHHHHHhhHH
Q 008368 35 FTLDRLH-KEPELLRVDAERIQRQMQEVAVGNYR 67 (568)
Q Consensus 35 ~sL~~L~-~Ep~~L~~e~~~l~~~lq~Lvy~NY~ 67 (568)
|-|..|+ +...-+...|..|..++.++ -+||+
T Consensus 49 CrLQglLdkqErDltkrINELKnqLEdl-sKnsK 81 (562)
T 3ghg_A 49 CRMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNK 81 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHH
T ss_pred cchhhhHHhhcCcHHHHHHHHHHHHHHH-Hhhch
Confidence 4566664 44455557777777777777 44444
No 30
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=21.75 E-value=7.1e+02 Score=26.08 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=41.2
Q ss_pred CHHHHhcchHHHHHHHHHHHHHHHHHHHhhHHHHHHHH---------HHHHHHHHhHhhhhhhHhHHHhhhhhhh
Q 008368 36 TLDRLHKEPELLRVDAERIQRQMQEVAVGNYRAFIAAA---------DALLAIREEVSSIDKHLDSMITEIPKLT 101 (568)
Q Consensus 36 sL~~L~~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~at---------dti~~m~~~~~~~e~~~~~L~~~l~~i~ 101 (568)
++..++.+.+.++.....+-..|+..+.+-.+.|+.-+ ..-+.+...+..+...+......+.+..
T Consensus 82 aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaK 156 (486)
T 3haj_A 82 AWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAK 156 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777778777777777776543 2235555556666555555555554443
No 31
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=21.61 E-value=2.8e+02 Score=22.54 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.2
Q ss_pred HHHHcCChHHHHHHHHHHhhH
Q 008368 143 TCVRNGNYDEALDLEAYVCKL 163 (568)
Q Consensus 143 ~cI~~~~YeeAl~l~~~~~~l 163 (568)
.+.++|+|++|++.|.++-.+
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~ 42 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKR 42 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 456789999999998877544
No 32
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=21.46 E-value=3.9e+02 Score=27.92 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=32.6
Q ss_pred CChHHHHHHhhc---CCHHHH---hcchHHHHHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhHhhhhhhH
Q 008368 23 LSQQPYVSELLS---FTLDRL---HKEPELLRVDAERIQRQMQEVAVGN----YRAFIAAADALLAIREEVSSIDKHL 90 (568)
Q Consensus 23 ~~~~~Yl~~L~s---~sL~~L---~~Ep~~L~~e~~~l~~~lq~Lvy~N----Y~~FI~atdti~~m~~~~~~~e~~~ 90 (568)
+..+.||.+.-. ..|.+| ++|-+.+.+++..+...+|.....- =+..-.++..+++|...+..++..+
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~ 100 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTI 100 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHh
Confidence 344555555333 333333 4566666666666666666662220 0012233445555555555554433
No 33
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.28 E-value=1.5e+02 Score=26.24 Aligned_cols=40 Identities=25% Similarity=0.278 Sum_probs=33.3
Q ss_pred HHHcCChHHHHHHHHHHhhHhhcCCCChHHHHHHHHHHHHHHH
Q 008368 144 CVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQS 186 (568)
Q Consensus 144 cI~~~~YeeAl~l~~~~~~ll~~~~~~p~~~~I~~ev~~~~~~ 186 (568)
+.+.|+|++|.++ +..++..-|+..-.+.+..-++..+..
T Consensus 88 ~yklgdY~~Ar~y---~d~lL~~eP~N~QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 88 CYKLGEYSMAKRY---VDTLFEHERNNKQVGALKSMVEDKIQK 127 (134)
T ss_dssp HHHHTCHHHHHHH---HHHHHTTCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHH---HHHHHhhCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999986 567888889999899988888887763
No 34
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.87 E-value=7.6e+02 Score=26.16 Aligned_cols=52 Identities=4% Similarity=0.072 Sum_probs=30.7
Q ss_pred CCHHHHh-cchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHhhh
Q 008368 35 FTLDRLH-KEPELLRVDAERIQRQMQEVAVGNYRAFIAAADALLAIREEVSSI 86 (568)
Q Consensus 35 ~sL~~L~-~Ep~~L~~e~~~l~~~lq~Lvy~NY~~FI~atdti~~m~~~~~~~ 86 (568)
|-|..++ +...-+...|..|...+.++-..|-+.|--...+...++..+...
T Consensus 50 CrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~ 102 (491)
T 1m1j_A 50 CRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGA 102 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhh
Confidence 6777775 444445566777766666666666555555555555555554443
No 35
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.44 E-value=1e+02 Score=24.61 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhHhhc
Q 008368 139 QLMDTCVRNGNYDEALDLEAYVCKLSTL 166 (568)
Q Consensus 139 ~lL~~cI~~~~YeeAl~l~~~~~~ll~~ 166 (568)
.+=|.|.-.|+|+.|+.+|..+..-..+
T Consensus 17 k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 17 KLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 3456677789999999999987655443
Done!