BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008369
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 111/438 (25%), Positives = 180/438 (41%), Gaps = 67/438 (15%)
Query: 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKIL 182
+ +++ G+RGD +P VA+ RL+E G R+ ++ + G+ P+G +
Sbjct: 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVG--RAVR 58
Query: 183 AGYMVKNKGFLPSGPSEIPIQRNQLKEII---YSLLPACKDPDPDTMVPFKPDAIIAN-- 237
AG + G LP G +E+ + E++ + +PA + DA++
Sbjct: 59 AG--AREPGELPPGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGL 101
Query: 238 -PPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSY-QIVDALIWLG 295
P A +AE L +P P SE Q A R Y Q D L
Sbjct: 102 LPAAVAVRSMAEKLGIPYRYTVLSPDHLPSE---------QSQAERDMYNQGADRLFG-- 150
Query: 296 IRDMINDFRKKRLNLRRVTYLSG-SYSSPLDVPYAYIWSPHLVP-KPKDWGPKIDVVGFC 353
D +N R + L V +L Y+ D P+ P L P +P D G + +
Sbjct: 151 --DAVNSHRAS-IGLPPVEHLYDYGYT---DQPW-LAADPVLSPLRPTDLG-TVQTGAWI 202
Query: 354 FLD---LASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGII 410
D L++ E +L G P+Y+GFGS P P + + ++A+ G R ++
Sbjct: 203 LPDQRPLSAELE------GFLRAGSPPVYVGFGSGPA--PAEAARVAIEAVRAQGRRVVL 254
Query: 411 NKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKAACPTTIVPFF 470
+ GW GLG + E D + ++ H LF R +A P +VP
Sbjct: 255 SSGWAGLGRIDEGDDCL-VVGEVNHQVLFGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQK 313
Query: 471 GDQPFWGERVHARGLGPA---PIPVEEFSLDKLVDAIRFMLDPKVKEHAVELAKAMENED 527
DQP++ RV G+G A P P +++ L A+ L P ++ A +A + D
Sbjct: 314 ADQPYYAGRVADLGVGVAHDGPTP----TVESLSAALATALTPGIRARAAAVAGTIRT-D 368
Query: 528 GVTGAVKAFYKHFPGKKS 545
G T A K + ++S
Sbjct: 369 GTTVAAKLLLEAISRQRS 386
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 99/412 (24%), Positives = 160/412 (38%), Gaps = 31/412 (7%)
Query: 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKIL 182
+ +++ + GTRGDV+ VA+ RL+ G + R+ ++ + G+ P+G L
Sbjct: 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEVGVPHVPVG-----L 55
Query: 183 AGYMVKNKGFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG 242
+M+ +G P P E E+ + +P + + A+ A G
Sbjct: 56 PQHMMLQEGMPPPPPEEEQRLAAMTVEMQFDAVPGAAEGCAAVV------AVGDLAAATG 109
Query: 243 HTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSYQIVDALIWLGIRDMIND 302
VAE L +P +++P PH +P ++ V +W D
Sbjct: 110 VRSVAEKLGLPF--FYSVPSPVYLASPHLPPAYDEPTTPGVTDIRV---LWEERAARFAD 164
Query: 303 FRKKRLNLRRVTYLSGSYSSPLDV-PYAYIWSPHLVPKP--KDWGPKIDVVGFCFLDLAS 359
LN RR DV Y + P L P P +D V L+
Sbjct: 165 RYGPTLNRRRAEI---GLPPVEDVFGYGHGERPLLAADPVLAPLQPDVDAVQTGAWLLSD 221
Query: 360 TYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGN 419
P L +L G P++IGFGS ++ V+A+ G R I+++GW L
Sbjct: 222 ERPLPPELEAFLAAGSPPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V 280
Query: 420 LAESKDFVYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKAACPTTIVPFFGDQPFWGER 479
L + +D + +D LF R +A P ++P DQP++ R
Sbjct: 281 LPDDRDDCFAIDEVNFQALFRRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGR 340
Query: 480 VHARGLGPA---PIPVEEFSLDKLVDAIRFMLDPKVKEHAVELAKAMENEDG 528
V A G+G A P P + + L A+ +L P+ + A E M DG
Sbjct: 341 VAALGIGVAHDGPTP----TFESLSAALTTVLAPETRARA-EAVAGMVLTDG 387
>pdb|1PN3|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PN3|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And The Acceptor Substrate Dvv.
pdb|1PNV|A Chain A, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
pdb|1PNV|B Chain B, Crystal Structure Of Tdp-Epi-Vancosaminyltransferase Gtfa
In Complexes With Tdp And Vancomycin
Length = 404
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 104/433 (24%), Positives = 174/433 (40%), Gaps = 67/433 (15%)
Query: 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKIL 182
+ +++ G+RGD +P VA+ RL+E G R+ ++ + G+ P+G +
Sbjct: 1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEVGVPMVPVGR--AVR 58
Query: 183 AGYMVKNKGFLPSGPSEIPIQRNQLKEII---YSLLPACKDPDPDTMVPFKPDAIIAN-- 237
AG + G LP G +E+ + E++ + +PA + DA++
Sbjct: 59 AG--AREPGELPPGAAEV------VTEVVAEWFDKVPAAIE---------GCDAVVTTGL 101
Query: 238 -PPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSY-QIVDALIWLG 295
P A +AE L +P P SE Q A R Y Q D L
Sbjct: 102 LPAAVAVRSMAEKLGIPYRYTVLSPDHLPSE---------QSQAERDMYNQGADRLFG-- 150
Query: 296 IRDMINDFRKKRLNLRRVTYLSG-SYSSPLDVPYAYIWSPHLVP-KPKDWGPKIDVVGFC 353
D +N R + L V +L Y+ D P+ P L P +P D G + +
Sbjct: 151 --DAVNSHRAS-IGLPPVEHLYDYGYT---DQPW-LAADPVLSPLRPTDLG-TVQTGAWI 202
Query: 354 FLDLASTYEPPDS--LVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIIN 411
D E P S L +L G P+Y+GFGS ++ +KA+ +G R +++
Sbjct: 203 LPD-----ERPLSAELEAFLAAGSTPVYVGFGSSSRPATADAAKMAIKAVRASGRRIVLS 257
Query: 412 KGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKAACP----TTIV 467
+GW L L + +++ LF R ++A P +V
Sbjct: 258 RGWADL-VLPDDGADCFVVGEVNLQELFGRVAAAIHHDSAGTTLLAMRAGIPQIVVRRVV 316
Query: 468 PFFGDQPFWGERVHARGLGPA---PIPVEEFSLDKLVDAIRFMLDPKVKEHAVELAKAME 524
+Q + +RV G+G A P+P ++D L A+ L P+++ A +A +
Sbjct: 317 DNVVEQAYHADRVAELGVGVAVDGPVP----TIDSLSAALDTALAPEIRARATTVADTI- 371
Query: 525 NEDGVTGAVKAFY 537
DG T A + +
Sbjct: 372 RADGTTVAAQLLF 384
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 70/169 (41%), Gaps = 10/169 (5%)
Query: 367 LVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDF 426
L +L+ G P+Y+GFGSL P + + A+ G R I+++GW L L +
Sbjct: 230 LAAFLDAGPPPVYLGFGSL--GAPADAVRVAIDAIRAHGRRVILSRGWADL-VLPDDGAD 286
Query: 427 VYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKAACPTTIVPFFGDQPFWGERVHARGLG 486
+ + H LF R +A P ++P DQP++ RV G+G
Sbjct: 287 CFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVG 346
Query: 487 PA---PIPVEEFSLDKLVDAIRFMLDPKVKEHAVELAKAMENEDGVTGA 532
A PIP + D L A+ L P+ A +A + + A
Sbjct: 347 VAHDGPIP----TFDSLSAALATALTPETHARATAVAGTIRTDGAAVAA 391
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176
+ +++ G+RGD +P VA+ R+++ G VR+ + + + G+ P+G
Sbjct: 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEVGVPHVPVG 54
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 99/451 (21%), Positives = 148/451 (32%), Gaps = 73/451 (16%)
Query: 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKI 181
P HI M + G V P + + + L GHRV A F D V
Sbjct: 7 PAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAA-------------- 52
Query: 182 LAGYMVKNKGFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDP--------DTMVPFKPDA 233
+GP + + +S LP D DP D + PF DA
Sbjct: 53 -------------TGPRPV---------LYHSTLPG-PDADPEAWGSTLLDNVEPFLNDA 89
Query: 234 IIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSYQIVDALIW 293
I A P + + + LH I + P L+R A LS +V W
Sbjct: 90 IQAL-PQLADAYADDIPDLVLHDITSYP-------ARVLARRWGVPAVSLSPNLV---AW 138
Query: 294 LGIRDMIND--FRKKRLNLRRVTYLSG-----SYSSPLDVPYAYIWSP--HLVPKPKDWG 344
G + + + +R+ R R Y + + + P + P LV PK
Sbjct: 139 KGYEEEVAEPMWREPRQTERGRAYYARFEAWLKENGITEHPDTFASHPPRSLVLIPKALQ 198
Query: 345 PKIDVVG---FCFLDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKAL 401
P D V + F+ + + EK + + GS ++P E +
Sbjct: 199 PHADRVDEDVYTFVGACQGDRAEEGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFG 258
Query: 402 EITGHRGIINKGWGGL-GNLAESKDFVYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKA 460
+ G ++ G L E D V + D P + + L
Sbjct: 259 NLPGWHLVLQIGRKVTPAELGELPDNVEVHDWVPQLAILRQADLFVTHAGAGGSQEGLAT 318
Query: 461 ACPTTIVPFFGDQPFWGERVHARGLGPA-PIPVEEFSLDKLVD-AIRFMLDPKVKEHAVE 518
A P VP DQ +G +GLG A + EE + D L + A+ + DP+V
Sbjct: 319 ATPMIAVPQAVDQ--FGNADMLQGLGVARKLATEEATADLLRETALALVDDPEVARRLRR 376
Query: 519 LAKAMENEDGVTGAVKAFYKHFPGKKSESEP 549
+ M E G A P + EP
Sbjct: 377 IQAEMAQEGGTRRAADLIEAELPARHERQEP 407
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 138/402 (34%), Gaps = 24/402 (5%)
Query: 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDP 179
+ P HI + G V P + I + L GHRV A F V AG P
Sbjct: 10 VTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAAG-------ATP 62
Query: 180 KILAGYMVKNKGFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPP 239
+ + K S P + + +LP +D D +PD I+ +
Sbjct: 63 VVYDSILPKESNPEESWPEDQESAMGLFLDEAVRVLPQLEDAYADD----RPDLIVYDIA 118
Query: 240 AYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSYQIVDALIWLGIRDM 299
++ + +P + + + F + V+ P A R A G D
Sbjct: 119 SWPAPVLGRKWDIPF-VQLSPTFVAYEGFEEDVPAVQDPTADRGEEAAAPA----GTGDA 173
Query: 300 INDFRKKRLNLRRVTYLSGSYSS-PLDVPYA-YIWSPH--LVPKPKDWGPKIDVVGFCFL 355
+ +R T LS +D P ++ +P+ +V P+ + K D VG +
Sbjct: 174 EEGAEAEDGLVRFFTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKGDTVGDNYT 233
Query: 356 DLASTYEPPDSLVKWLE--DGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKG 413
+ TY W DG + I GS + + + + H +
Sbjct: 234 FVGPTYGDRSHQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLSVGR 293
Query: 414 WGGLGNLAESKDFVYLLDNCPHDWLFSRCLXXXXXXXXXXXXXXLKAACPTTIVPFFGDQ 473
+ +L E V + P + ++ L A P VP +Q
Sbjct: 294 FVDPADLGEVPPNVEVHQWVPQLDILTKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQ 353
Query: 474 PFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKE 514
ER+ GLG IP ++ + +KL +A+ + DP V E
Sbjct: 354 TMNAERIVELGLG-RHIPRDQVTAEKLREAVLAVASDPGVAE 394
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 126 VMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174
+++I G + G V P V + L+ GH V +A N V GAGL F P
Sbjct: 18 ILVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 67
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 126 VMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174
+++I G + G V P V + L+ GH V +A N V GAGL F P
Sbjct: 17 ILVIAGCSEGFVXPLVPLSWALRAAGHEVLVAASENXGPTVTGAGLPFAP 66
>pdb|1YVY|A Chain A, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YVY|B Chain B, Crystal Strucutre Of Anaerobiospirillum Succiniciproducens
Phosphoenolpyruvate Carboxykinase
pdb|1YTM|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
pdb|1YTM|B Chain B, Crystal Structure Of Phosphoenolpyruvate Carboxykinase Of
Anaerobiospirillum Succiniciproducens Complexed With
Atp, Oxalate, Magnesium And Manganese Ions
Length = 532
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 381 GFGSLPVEEPEKMTEIIVKALEITGHRG-IINKGWGGLGNLAESKDFVYLLD 431
F +LP P K E++VK +E +G + ++N GW G G KD ++D
Sbjct: 406 AFLTLP---PTKYAEVLVKRMEASGAKAYLVNTGWNGTGKRISIKDTRGIID 454
>pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein
1-Like Atpase Domain In Complex With Adp And Inorganic
Phosphate
Length = 408
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 161 FKDFVLGAGLEFFPL-----GGDPKILAGYMVKNKGFLPSGPSEIPIQRNQLKEIIYSLL 215
F D V+ A ++ +P GG PK+L Y +NK F P S + + + LKE + L
Sbjct: 102 FNDPVVQADMKLWPFQVINEGGKPKVLVSYKGENKAFYPEEISSMVLTK--LKETAEAFL 159
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 390 PEKMTEIIVKALEITGHRG-IINKGWGGLGNLAESKDFVYLLD 431
P + E++VK ++ G + ++N GW G G KD ++D
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIID 460
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 390 PEKMTEIIVKALEITGHRG-IINKGWGGLGNLAESKDFVYLLD 431
P + E++VK ++ G + ++N GW G G KD ++D
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIID 460
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 390 PEKMTEIIVKALEITGHRG-IINKGWGGLGNLAESKDFVYLLD 431
P + E++VK ++ G + ++N GW G G KD ++D
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIID 460
>pdb|1SVA|1 Chain 1, Simian Virus 40
pdb|1SVA|2 Chain 2, Simian Virus 40
pdb|1SVA|3 Chain 3, Simian Virus 40
pdb|1SVA|4 Chain 4, Simian Virus 40
pdb|1SVA|5 Chain 5, Simian Virus 40
pdb|1SVA|6 Chain 6, Simian Virus 40
Length = 361
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 102 YTDDSTDQEPIEAADVHGIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF 161
+TDDS D+E + V IP +I + T G++ + A+ + + G L H+
Sbjct: 75 FTDDSPDKEQLPCYSVARIPLPNINEDL--TCGNILMWEAVTVKTEVIGVTAMLNLHSGT 132
Query: 162 KDF--------VLGAGLEFFPLGGDPKILAGYMVKNKGFLPS 195
+ + G+ FF +GG+P L G + + P+
Sbjct: 133 QKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPA 174
>pdb|3BWQ|A Chain A, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|B Chain B, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|C Chain C, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|D Chain D, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWQ|E Chain E, Structure Of Free Sv40 Vp1 Pentamer
pdb|3BWR|A Chain A, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|B Chain B, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|C Chain C, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|D Chain D, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
pdb|3BWR|E Chain E, Sv40 Vp1 Pentamer In Complex With Gm1 Oligosaccharide
Length = 272
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 10/102 (9%)
Query: 102 YTDDSTDQEPIEAADVHGIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF 161
+TDDS D+E + V IP +I + T G++ + A+ + + G L H+
Sbjct: 50 FTDDSPDKEQLPCYSVARIPLPNINEDL--TCGNILMWEAVTVKTEVIGVTAMLNLHSGT 107
Query: 162 KDF--------VLGAGLEFFPLGGDPKILAGYMVKNKGFLPS 195
+ + G+ FF +GG+P L G + + P+
Sbjct: 108 QKTHENGAGKPIQGSNFHFFAVGGEPLELQGVLANYRTKYPA 149
>pdb|1OEN|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 540
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 390 PEKMTEIIVKALEITGHRG-IINKGWGGLGNLAESKDFVYLLD 431
P + E++VK ++ G + ++N GW G G + D ++D
Sbjct: 418 PTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISAADTRAIID 460
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLE 171
HI+ V G V P + + L GHR+ T F D V AG E
Sbjct: 6 HILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAAGAE 53
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 117 VHGIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174
+ G H++++ V + G + P + + L GHRV T F + V AG P
Sbjct: 15 IEGRHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVP 72
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 117 VHGIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174
+ G H++++ V + G + P + + L GHRV T F + V AG P
Sbjct: 15 IEGRHXAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAAGATVVP 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,187,517
Number of Sequences: 62578
Number of extensions: 795473
Number of successful extensions: 1683
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 29
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)