Query 008369
Match_columns 568
No_of_seqs 354 out of 1518
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 22:57:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008369.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008369hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03784 GT1_Gtf_like This fami 100.0 6.1E-51 1.3E-55 433.6 41.8 394 123-538 1-400 (401)
2 PHA03392 egt ecdysteroid UDP-g 100.0 7.8E-46 1.7E-50 401.3 39.1 415 121-543 19-468 (507)
3 TIGR01426 MGT glycosyltransfer 100.0 4.7E-45 1E-49 387.2 31.3 382 129-541 2-391 (392)
4 COG1819 Glycosyl transferases, 100.0 5.5E-44 1.2E-48 377.1 27.3 393 122-543 1-402 (406)
5 PLN02670 transferase, transfer 100.0 4E-42 8.7E-47 366.7 27.2 389 121-544 5-467 (472)
6 PLN02562 UDP-glycosyltransfera 100.0 1.7E-41 3.7E-46 362.5 31.0 384 121-540 5-447 (448)
7 PLN02208 glycosyltransferase f 100.0 6.3E-42 1.4E-46 364.1 26.9 390 121-540 3-437 (442)
8 PLN02448 UDP-glycosyltransfera 100.0 4.8E-42 1E-46 369.1 25.2 387 119-542 7-457 (459)
9 PF00201 UDPGT: UDP-glucoronos 100.0 2.5E-45 5.4E-50 401.6 -5.3 410 124-545 2-447 (500)
10 PLN02210 UDP-glucosyl transfer 100.0 6.3E-41 1.4E-45 358.5 26.0 382 121-541 7-454 (456)
11 PLN02410 UDP-glucoronosyl/UDP- 100.0 2.7E-41 5.8E-46 360.1 22.2 385 121-540 6-448 (451)
12 PLN02863 UDP-glucoronosyl/UDP- 100.0 1.2E-40 2.6E-45 357.6 24.2 390 120-544 7-473 (477)
13 PLN00414 glycosyltransferase f 100.0 6.9E-41 1.5E-45 356.5 21.1 385 122-540 4-438 (446)
14 PLN03007 UDP-glucosyltransfera 100.0 1.1E-39 2.4E-44 352.6 29.5 389 120-540 3-478 (482)
15 PLN02554 UDP-glycosyltransfera 100.0 1.9E-40 4.2E-45 358.1 22.1 394 122-542 2-478 (481)
16 PLN02764 glycosyltransferase f 100.0 2.5E-40 5.4E-45 350.3 21.9 386 121-541 4-444 (453)
17 PLN02207 UDP-glycosyltransfera 100.0 2.7E-39 5.8E-44 344.7 28.2 384 121-540 2-463 (468)
18 PLN02555 limonoid glucosyltran 100.0 8.6E-40 1.9E-44 350.0 23.8 383 122-543 7-470 (480)
19 PLN02992 coniferyl-alcohol glu 100.0 1.2E-38 2.5E-43 340.5 29.1 381 121-539 4-466 (481)
20 PLN02173 UDP-glucosyl transfer 100.0 7.3E-39 1.6E-43 340.1 26.3 378 121-540 4-446 (449)
21 PLN02152 indole-3-acetate beta 100.0 1.8E-38 3.9E-43 337.6 27.0 382 122-540 3-454 (455)
22 PLN00164 glucosyltransferase; 100.0 1.9E-38 4E-43 341.6 26.1 391 121-544 2-475 (480)
23 PLN02167 UDP-glycosyltransfera 100.0 7.8E-38 1.7E-42 337.3 24.8 397 122-542 3-472 (475)
24 PLN03004 UDP-glycosyltransfera 100.0 3.9E-38 8.4E-43 334.7 21.9 373 122-525 3-440 (451)
25 PLN02534 UDP-glycosyltransfera 100.0 5.1E-37 1.1E-41 329.1 26.8 386 121-541 7-485 (491)
26 PLN03015 UDP-glucosyl transfer 100.0 2.1E-36 4.5E-41 321.5 25.5 386 123-540 4-466 (470)
27 KOG1192 UDP-glucuronosyl and U 100.0 1E-32 2.2E-37 301.7 30.9 412 122-540 5-454 (496)
28 PRK12446 undecaprenyldiphospho 100.0 2.6E-28 5.7E-33 254.2 26.1 336 122-538 1-351 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.9 1.2E-24 2.5E-29 224.8 26.7 341 123-540 1-355 (357)
30 PF13528 Glyco_trans_1_3: Glyc 99.9 4.5E-25 9.7E-30 227.4 23.6 311 123-507 1-317 (318)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.2E-22 2.5E-27 209.9 25.0 302 124-512 1-317 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.4E-20 3E-25 197.2 27.9 340 122-541 1-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 9E-19 2E-23 182.6 25.8 331 124-534 1-349 (350)
34 TIGR01133 murG undecaprenyldip 99.8 3.6E-18 7.7E-23 178.0 24.6 329 123-535 1-347 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.8 1.2E-17 2.5E-22 176.6 18.3 338 123-538 6-384 (385)
36 PRK00025 lpxB lipid-A-disaccha 99.7 4.4E-16 9.5E-21 164.5 20.9 163 375-542 186-377 (380)
37 PRK13609 diacylglycerol glucos 99.7 7.1E-16 1.5E-20 163.0 22.3 160 374-541 201-370 (380)
38 COG4671 Predicted glycosyl tra 99.7 3.7E-16 8.1E-21 154.5 17.1 353 120-542 7-391 (400)
39 TIGR03590 PseG pseudaminic aci 99.7 9.2E-16 2E-20 155.0 17.0 100 376-479 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.7 7.6E-15 1.7E-19 155.7 21.9 160 373-541 200-370 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.6 3.6E-17 7.9E-22 152.5 1.8 139 377-516 1-151 (167)
42 PF03033 Glyco_transf_28: Glyc 99.6 1.3E-15 2.8E-20 137.3 9.8 137 125-268 1-138 (139)
43 PLN02605 monogalactosyldiacylg 99.5 1.3E-12 2.9E-17 138.3 25.3 163 373-540 204-379 (382)
44 TIGR03492 conserved hypothetic 99.5 7.7E-13 1.7E-17 140.2 17.5 185 345-540 180-396 (396)
45 cd03814 GT1_like_2 This family 99.5 1.5E-11 3.2E-16 127.4 26.8 158 375-540 196-363 (364)
46 COG3980 spsG Spore coat polysa 99.4 1.7E-11 3.7E-16 118.4 19.9 290 123-529 1-313 (318)
47 PLN02871 UDP-sulfoquinovose:DA 99.4 5.2E-10 1.1E-14 121.6 29.9 152 377-538 264-429 (465)
48 PF04007 DUF354: Protein of un 99.3 1.3E-09 2.7E-14 112.0 26.7 320 123-540 1-334 (335)
49 cd03794 GT1_wbuB_like This fam 99.3 9E-10 2E-14 114.5 25.0 154 374-535 218-392 (394)
50 cd03801 GT1_YqgM_like This fam 99.3 2.1E-09 4.6E-14 110.3 25.9 158 375-540 198-373 (374)
51 cd03823 GT1_ExpE7_like This fa 99.2 1.1E-09 2.4E-14 113.0 22.8 155 375-540 190-357 (359)
52 cd03808 GT1_cap1E_like This fa 99.2 4.4E-09 9.6E-14 107.9 26.6 155 375-537 187-358 (359)
53 cd03818 GT1_ExpC_like This fam 99.2 5.8E-09 1.3E-13 111.0 26.1 105 424-535 280-393 (396)
54 cd03800 GT1_Sucrose_synthase T 99.2 1.4E-08 3.1E-13 107.2 29.0 155 375-537 219-397 (398)
55 cd04962 GT1_like_5 This family 99.2 1.1E-08 2.4E-13 107.1 26.6 157 376-540 197-368 (371)
56 cd03825 GT1_wcfI_like This fam 99.2 5.5E-09 1.2E-13 108.8 24.0 111 423-540 242-362 (365)
57 cd03820 GT1_amsD_like This fam 99.1 2.9E-08 6.2E-13 101.4 27.2 155 375-537 177-347 (348)
58 PRK10307 putative glycosyl tra 99.1 3.6E-08 7.8E-13 105.4 28.8 154 376-540 229-405 (412)
59 cd03816 GT1_ALG1_like This fam 99.1 2.9E-08 6.2E-13 106.4 27.3 139 375-524 231-399 (415)
60 TIGR00236 wecB UDP-N-acetylglu 99.1 2.5E-08 5.4E-13 104.9 25.8 153 376-539 198-364 (365)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 99.1 4E-09 8.6E-14 110.6 18.0 133 375-516 198-344 (363)
62 cd03817 GT1_UGDG_like This fam 99.1 2.1E-08 4.6E-13 103.7 23.2 140 375-523 201-357 (374)
63 TIGR03449 mycothiol_MshA UDP-N 99.1 5.2E-08 1.1E-12 103.8 25.4 158 376-540 219-399 (405)
64 cd03819 GT1_WavL_like This fam 99.0 1.6E-07 3.5E-12 97.5 27.0 140 376-523 185-345 (355)
65 cd03795 GT1_like_4 This family 99.0 1.5E-07 3.3E-12 97.6 26.3 138 375-522 190-345 (357)
66 cd03798 GT1_wlbH_like This fam 99.0 1.2E-07 2.6E-12 97.7 24.5 157 375-540 201-374 (377)
67 cd03821 GT1_Bme6_like This fam 99.0 6.2E-07 1.3E-11 92.7 28.9 153 375-537 202-374 (375)
68 cd03805 GT1_ALG2_like This fam 99.0 4.5E-07 9.9E-12 95.9 28.3 150 375-532 210-388 (392)
69 cd03822 GT1_ecORF704_like This 98.9 4.2E-07 9.1E-12 94.2 26.5 157 375-540 184-365 (366)
70 PRK05749 3-deoxy-D-manno-octul 98.9 3.3E-07 7E-12 98.5 25.3 112 426-542 303-423 (425)
71 cd03796 GT1_PIG-A_like This fa 98.9 3.8E-07 8.2E-12 97.1 24.4 158 375-542 192-371 (398)
72 PRK14089 ipid-A-disaccharide s 98.9 2.6E-08 5.7E-13 103.1 14.7 180 344-538 143-346 (347)
73 cd03802 GT1_AviGT4_like This f 98.9 2.1E-07 4.5E-12 95.8 20.9 147 377-540 172-334 (335)
74 cd04955 GT1_like_6 This family 98.9 1.2E-06 2.7E-11 91.0 26.8 150 377-540 194-362 (363)
75 cd03809 GT1_mtfB_like This fam 98.9 3.5E-07 7.5E-12 94.8 21.9 153 375-537 194-364 (365)
76 cd04951 GT1_WbdM_like This fam 98.8 5.8E-07 1.3E-11 93.3 23.2 156 375-540 187-358 (360)
77 TIGR02472 sucr_P_syn_N sucrose 98.8 1.3E-05 2.9E-10 86.5 33.2 111 423-540 315-438 (439)
78 PLN02846 digalactosyldiacylgly 98.8 1.7E-06 3.7E-11 92.7 25.6 152 378-547 230-396 (462)
79 cd03799 GT1_amsK_like This is 98.8 4.3E-07 9.4E-12 94.1 20.7 138 376-521 179-339 (355)
80 cd03792 GT1_Trehalose_phosphor 98.8 7.5E-06 1.6E-10 86.3 30.1 155 376-540 190-369 (372)
81 cd03807 GT1_WbnK_like This fam 98.8 2.9E-06 6.4E-11 87.2 25.6 155 376-540 193-364 (365)
82 cd05844 GT1_like_7 Glycosyltra 98.8 6.5E-07 1.4E-11 93.5 20.4 108 423-537 243-365 (367)
83 cd03811 GT1_WabH_like This fam 98.8 2.7E-06 5.8E-11 86.8 24.5 137 374-518 187-341 (353)
84 cd03812 GT1_CapH_like This fam 98.7 3E-06 6.4E-11 88.1 24.2 136 375-519 191-341 (358)
85 PRK09922 UDP-D-galactose:(gluc 98.7 3E-07 6.4E-12 96.5 16.4 157 376-540 180-357 (359)
86 TIGR02149 glgA_Coryne glycogen 98.7 1.7E-05 3.7E-10 83.7 29.0 157 376-540 201-384 (388)
87 TIGR03088 stp2 sugar transfera 98.7 3.6E-05 7.8E-10 80.9 31.1 159 375-540 193-370 (374)
88 TIGR02468 sucrsPsyn_pln sucros 98.6 3.9E-05 8.4E-10 88.7 29.7 164 366-539 469-667 (1050)
89 PLN02275 transferase, transfer 98.6 6.2E-06 1.4E-10 87.0 21.7 75 425-508 286-371 (371)
90 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 1.9E-05 4.2E-10 83.0 21.6 130 375-515 201-344 (365)
91 TIGR03087 stp1 sugar transfera 98.4 3.3E-05 7.1E-10 82.2 21.8 155 377-541 225-395 (397)
92 PLN00142 sucrose synthase 98.4 8.5E-05 1.8E-09 84.2 25.4 162 375-546 572-774 (815)
93 COG1519 KdtA 3-deoxy-D-manno-o 98.4 9.8E-05 2.1E-09 76.6 23.5 108 425-538 300-417 (419)
94 PLN02501 digalactosyldiacylgly 98.4 2.2E-05 4.7E-10 86.4 19.6 107 426-547 602-714 (794)
95 TIGR02095 glgA glycogen/starch 98.4 5.3E-05 1.2E-09 82.6 22.8 155 376-540 291-470 (473)
96 PF02684 LpxB: Lipid-A-disacch 98.4 1.7E-05 3.7E-10 82.8 17.4 179 343-525 151-356 (373)
97 cd04950 GT1_like_1 Glycosyltra 98.4 5.3E-05 1.1E-09 80.0 21.4 150 375-541 204-370 (373)
98 TIGR02470 sucr_synth sucrose s 98.3 0.00053 1.1E-08 77.8 29.8 117 423-546 617-751 (784)
99 PRK15179 Vi polysaccharide bio 98.3 0.00023 5.1E-09 80.3 26.2 156 377-540 518-691 (694)
100 PRK01021 lpxB lipid-A-disaccha 98.3 0.00011 2.3E-09 80.4 22.2 173 343-518 379-580 (608)
101 PRK00654 glgA glycogen synthas 98.2 0.00011 2.5E-09 79.9 21.1 154 376-540 282-460 (466)
102 KOG3349 Predicted glycosyltran 98.2 7.7E-06 1.7E-10 72.1 8.8 112 376-487 4-130 (170)
103 cd03791 GT1_Glycogen_synthase_ 98.2 0.00046 9.9E-09 75.3 23.9 157 376-540 296-474 (476)
104 cd03806 GT1_ALG11_like This fa 98.1 0.00095 2.1E-08 71.7 24.9 80 423-510 303-393 (419)
105 PLN02949 transferase, transfer 98.1 0.0038 8.3E-08 67.7 29.0 108 423-538 333-452 (463)
106 PRK15484 lipopolysaccharide 1, 98.1 0.00011 2.3E-09 77.9 16.6 113 423-541 255-376 (380)
107 PRK15427 colanic acid biosynth 98.0 7.1E-05 1.5E-09 80.0 13.8 157 376-540 222-403 (406)
108 cd01635 Glycosyltransferase_GT 98.0 0.00037 8E-09 66.7 17.7 50 423-472 159-216 (229)
109 PF00534 Glycos_transf_1: Glyc 98.0 3.4E-05 7.4E-10 71.6 9.2 141 374-521 13-170 (172)
110 COG0763 LpxB Lipid A disacchar 98.0 0.00064 1.4E-08 69.9 18.8 193 345-541 156-380 (381)
111 PLN02316 synthase/transferase 97.9 0.0044 9.5E-08 72.3 26.7 155 376-540 840-1031(1036)
112 COG0381 WecB UDP-N-acetylgluco 97.9 0.0017 3.7E-08 67.0 20.8 163 371-542 200-374 (383)
113 PRK10125 putative glycosyl tra 97.9 0.0042 9E-08 66.4 24.2 132 395-539 259-401 (405)
114 cd03804 GT1_wbaZ_like This fam 97.9 3.4E-05 7.3E-10 80.4 7.8 135 377-521 196-339 (351)
115 COG1817 Uncharacterized protei 97.8 0.006 1.3E-07 60.8 22.1 111 123-260 1-113 (346)
116 cd03813 GT1_like_3 This family 97.5 0.003 6.5E-08 69.0 17.4 156 376-539 293-473 (475)
117 cd04946 GT1_AmsK_like This fam 97.5 0.0012 2.5E-08 70.7 13.9 94 424-523 288-391 (407)
118 TIGR02918 accessory Sec system 97.5 0.0012 2.7E-08 72.2 13.3 161 376-540 319-497 (500)
119 COG5017 Uncharacterized conser 97.4 0.00098 2.1E-08 58.0 9.2 105 378-487 2-119 (161)
120 cd04949 GT1_gtfA_like This fam 97.3 0.0036 7.9E-08 65.6 14.2 143 376-524 204-360 (372)
121 PRK09814 beta-1,6-galactofuran 97.2 0.0043 9.4E-08 64.4 13.0 123 404-538 189-331 (333)
122 PHA01630 putative group 1 glyc 97.1 0.015 3.2E-07 60.4 15.6 108 430-541 195-329 (331)
123 PHA01633 putative glycosyl tra 96.9 0.011 2.4E-07 61.1 12.3 83 423-508 199-305 (335)
124 PF13844 Glyco_transf_41: Glyc 96.6 0.03 6.5E-07 60.1 13.2 160 376-540 285-464 (468)
125 PRK14098 glycogen synthase; Pr 96.6 0.022 4.8E-07 62.4 12.3 159 376-540 307-483 (489)
126 PF02350 Epimerase_2: UDP-N-ac 96.5 0.0038 8.3E-08 65.1 5.9 153 373-536 178-345 (346)
127 PF13692 Glyco_trans_1_4: Glyc 96.5 0.0025 5.3E-08 56.4 3.7 120 378-508 4-133 (135)
128 PRK10422 lipopolysaccharide co 96.5 0.95 2.1E-05 47.3 23.6 49 121-169 4-54 (352)
129 cd03789 GT1_LPS_heptosyltransf 96.4 0.38 8.3E-06 48.4 19.4 46 124-169 1-48 (279)
130 PRK10916 ADP-heptose:LPS hepto 96.4 0.15 3.2E-06 53.3 16.8 47 123-169 1-49 (348)
131 PRK10964 ADP-heptose:LPS hepto 96.2 0.11 2.4E-06 53.6 14.8 47 123-169 1-49 (322)
132 PF13477 Glyco_trans_4_2: Glyc 96.2 0.042 9E-07 48.8 10.2 101 124-258 1-106 (139)
133 PRK15490 Vi polysaccharide bio 96.0 0.067 1.4E-06 58.6 12.0 158 377-541 399-574 (578)
134 TIGR03713 acc_sec_asp1 accesso 95.7 0.11 2.4E-06 57.1 12.6 102 425-538 409-517 (519)
135 TIGR02193 heptsyl_trn_I lipopo 95.6 1 2.3E-05 46.1 18.8 53 124-176 1-57 (319)
136 PLN02939 transferase, transfer 95.6 0.14 3E-06 59.3 13.0 156 377-540 780-964 (977)
137 COG3914 Spy Predicted O-linked 95.6 0.22 4.8E-06 53.8 13.5 130 376-511 430-579 (620)
138 PF06258 Mito_fiss_Elm1: Mitoc 95.4 1.8 3.9E-05 44.4 19.3 96 392-487 169-278 (311)
139 COG0438 RfaG Glycosyltransfera 95.2 0.46 1E-05 47.5 14.4 154 377-538 200-372 (381)
140 TIGR02195 heptsyl_trn_II lipop 95.2 2.6 5.5E-05 43.6 20.1 46 124-169 1-48 (334)
141 TIGR02201 heptsyl_trn_III lipo 95.0 2.3 5.1E-05 44.1 19.3 105 124-257 1-109 (344)
142 PF06722 DUF1205: Protein of u 95.0 0.011 2.5E-07 49.4 1.4 68 361-428 24-97 (97)
143 PRK14099 glycogen synthase; Pr 94.7 0.24 5.2E-06 54.3 11.4 158 377-540 296-476 (485)
144 PF05159 Capsule_synth: Capsul 94.6 1.6 3.5E-05 43.7 16.3 76 391-468 140-225 (269)
145 PF13579 Glyco_trans_4_4: Glyc 94.4 0.063 1.4E-06 48.0 5.1 41 137-177 5-47 (160)
146 PF13524 Glyco_trans_1_2: Glyc 93.8 0.31 6.7E-06 40.0 7.5 81 448-537 9-91 (92)
147 COG0859 RfaF ADP-heptose:LPS h 93.6 2.5 5.3E-05 43.9 15.6 47 122-168 1-49 (334)
148 cd03788 GT1_TPS Trehalose-6-Ph 93.5 1.1 2.4E-05 48.7 13.4 104 427-540 343-459 (460)
149 PRK10017 colanic acid biosynth 93.5 3.3 7.2E-05 44.5 16.6 85 437-525 323-409 (426)
150 PF01975 SurE: Survival protei 93.3 0.62 1.3E-05 44.4 9.6 39 123-162 1-39 (196)
151 TIGR02400 trehalose_OtsA alpha 92.3 1.4 3E-05 47.8 11.9 103 427-540 338-454 (456)
152 PRK05579 bifunctional phosphop 92.2 8.2 0.00018 41.1 17.3 47 121-168 5-51 (399)
153 PF08660 Alg14: Oligosaccharid 91.7 1 2.2E-05 41.9 8.7 110 127-259 2-129 (170)
154 PF13439 Glyco_transf_4: Glyco 90.1 2 4.4E-05 38.7 9.2 30 132-161 11-40 (177)
155 COG4370 Uncharacterized protei 88.3 1.3 2.8E-05 44.4 6.5 103 431-537 301-408 (412)
156 TIGR00715 precor6x_red precorr 88.1 3.9 8.4E-05 40.7 10.0 96 123-262 1-103 (256)
157 PF12000 Glyco_trans_4_3: Gkyc 88.1 3.1 6.8E-05 38.6 8.7 33 228-260 64-97 (171)
158 KOG4626 O-linked N-acetylgluco 86.7 7.4 0.00016 42.9 11.5 137 376-518 759-913 (966)
159 PF02441 Flavoprotein: Flavopr 86.6 0.88 1.9E-05 40.1 4.1 46 123-169 1-46 (129)
160 COG3660 Predicted nucleoside-d 86.4 37 0.0008 33.7 16.0 37 431-467 234-271 (329)
161 PF08323 Glyco_transf_5: Starc 83.9 13 0.00028 36.7 11.4 27 134-160 17-43 (245)
162 cd03793 GT1_Glycogen_synthase_ 83.9 5.2 0.00011 44.3 9.1 103 434-537 467-581 (590)
163 KOG1111 N-acetylglucosaminyltr 83.0 13 0.00029 38.3 10.9 106 389-508 209-333 (426)
164 PF02951 GSH-S_N: Prokaryotic 82.9 1.9 4.2E-05 37.5 4.4 39 123-161 1-42 (119)
165 PRK13932 stationary phase surv 82.6 13 0.00029 36.9 10.7 40 121-162 4-43 (257)
166 KOG2941 Beta-1,4-mannosyltrans 82.1 21 0.00046 36.8 11.8 118 120-257 10-135 (444)
167 TIGR00087 surE 5'/3'-nucleotid 81.5 17 0.00036 36.0 10.9 39 123-164 1-40 (244)
168 PRK08057 cobalt-precorrin-6x r 80.8 13 0.00028 36.8 9.9 96 122-262 2-103 (248)
169 TIGR02195 heptsyl_trn_II lipop 80.0 16 0.00035 37.6 11.0 94 124-259 176-278 (334)
170 PLN03063 alpha,alpha-trehalose 80.0 8.3 0.00018 45.0 9.5 101 430-540 361-475 (797)
171 PRK14501 putative bifunctional 79.2 14 0.00031 42.6 11.2 105 426-541 343-461 (726)
172 PRK02155 ppnK NAD(+)/NADH kina 78.7 13 0.00029 37.7 9.5 100 389-512 18-121 (291)
173 PRK10916 ADP-heptose:LPS hepto 78.2 20 0.00044 37.2 11.1 102 124-259 182-288 (348)
174 cd02067 B12-binding B12 bindin 78.1 17 0.00036 31.3 8.8 53 124-176 1-57 (119)
175 COG0859 RfaF ADP-heptose:LPS h 78.0 15 0.00032 38.1 9.9 96 122-259 175-278 (334)
176 KOG0853 Glycosyltransferase [C 76.8 2.1 4.6E-05 46.2 3.2 66 452-522 380-446 (495)
177 PRK14098 glycogen synthase; Pr 76.7 3.9 8.4E-05 44.9 5.4 41 119-159 2-48 (489)
178 PRK13934 stationary phase surv 75.9 29 0.00063 34.6 10.7 38 123-162 1-38 (266)
179 PRK03372 ppnK inorganic polyph 75.2 17 0.00037 37.2 9.2 106 390-512 19-130 (306)
180 TIGR02398 gluc_glyc_Psyn gluco 74.6 92 0.002 34.1 15.1 95 425-529 362-470 (487)
181 TIGR02919 accessory Sec system 74.5 18 0.00039 39.0 9.6 130 391-530 291-432 (438)
182 PRK06029 3-octaprenyl-4-hydrox 74.5 4 8.7E-05 38.5 4.1 46 122-168 1-47 (185)
183 PRK07313 phosphopantothenoylcy 74.2 3.8 8.2E-05 38.6 3.9 45 122-167 1-45 (182)
184 PRK13935 stationary phase surv 74.2 31 0.00066 34.3 10.3 38 123-162 1-38 (253)
185 PRK13933 stationary phase surv 72.4 38 0.00083 33.6 10.6 39 123-163 1-39 (253)
186 PRK10422 lipopolysaccharide co 72.4 41 0.0009 34.9 11.6 28 230-259 262-289 (352)
187 PRK08305 spoVFB dipicolinate s 72.0 5.7 0.00012 37.8 4.5 46 122-167 5-50 (196)
188 PRK02261 methylaspartate mutas 71.8 6.8 0.00015 35.0 4.8 56 121-176 2-61 (137)
189 PF04127 DFP: DNA / pantothena 70.5 12 0.00025 35.4 6.2 52 123-176 4-67 (185)
190 PRK01231 ppnK inorganic polyph 70.3 27 0.00059 35.5 9.3 99 389-511 17-119 (295)
191 PF04464 Glyphos_transf: CDP-G 70.1 21 0.00046 37.3 8.9 108 423-537 250-368 (369)
192 PRK06732 phosphopantothenate-- 70.1 5.9 0.00013 38.7 4.3 47 366-412 140-187 (229)
193 PRK02649 ppnK inorganic polyph 69.9 28 0.00061 35.6 9.3 105 390-512 15-126 (305)
194 PF02844 GARS_N: Phosphoribosy 69.9 17 0.00038 30.5 6.4 27 230-256 62-91 (100)
195 PRK06249 2-dehydropantoate 2-r 69.7 8.5 0.00018 39.4 5.6 49 120-174 3-51 (313)
196 PRK00421 murC UDP-N-acetylmura 68.9 26 0.00057 38.0 9.5 32 121-156 6-37 (461)
197 PRK14099 glycogen synthase; Pr 68.7 7.4 0.00016 42.6 5.2 39 121-159 2-46 (485)
198 PRK04539 ppnK inorganic polyph 68.6 29 0.00062 35.4 9.0 103 390-512 19-126 (296)
199 COG0541 Ffh Signal recognition 68.4 38 0.00083 36.1 9.9 58 119-176 97-162 (451)
200 PF01075 Glyco_transf_9: Glyco 68.4 27 0.0006 34.0 8.8 97 121-259 104-210 (247)
201 PRK14077 pnk inorganic polypho 68.1 29 0.00063 35.1 8.9 96 389-511 22-121 (287)
202 PF02571 CbiJ: Precorrin-6x re 67.9 36 0.00079 33.7 9.4 96 123-263 1-105 (249)
203 PF12146 Hydrolase_4: Putative 67.8 12 0.00027 29.8 5.0 36 122-157 15-50 (79)
204 smart00851 MGS MGS-like domain 67.5 24 0.00052 28.7 6.8 32 139-172 2-33 (90)
205 PRK05920 aromatic acid decarbo 67.2 8 0.00017 37.0 4.4 45 122-167 3-47 (204)
206 cd03789 GT1_LPS_heptosyltransf 66.4 51 0.0011 32.8 10.5 100 123-259 122-225 (279)
207 PF06925 MGDG_synth: Monogalac 66.4 17 0.00037 33.4 6.4 23 135-157 1-24 (169)
208 PRK00346 surE 5'(3')-nucleotid 66.1 58 0.0013 32.3 10.3 38 123-162 1-38 (250)
209 PRK05986 cob(I)alamin adenolsy 65.8 84 0.0018 29.8 10.9 56 122-177 22-84 (191)
210 COG1703 ArgK Putative periplas 65.4 78 0.0017 32.2 11.0 39 120-158 49-87 (323)
211 TIGR02201 heptsyl_trn_III lipo 65.0 70 0.0015 33.0 11.5 28 230-259 260-287 (344)
212 COG0496 SurE Predicted acid ph 64.3 34 0.00074 33.8 8.2 40 123-164 1-40 (252)
213 COG2099 CobK Precorrin-6x redu 64.2 65 0.0014 31.8 10.0 97 122-263 2-105 (257)
214 PRK02797 4-alpha-L-fucosyltran 63.4 1.2E+02 0.0027 31.0 12.0 78 425-507 206-291 (322)
215 PRK13789 phosphoribosylamine-- 63.3 24 0.00053 37.9 7.7 33 121-158 3-35 (426)
216 PRK10964 ADP-heptose:LPS hepto 62.5 52 0.0011 33.6 9.8 28 230-259 253-280 (322)
217 PRK05647 purN phosphoribosylgl 62.3 50 0.0011 31.5 8.9 52 122-176 1-58 (200)
218 COG0003 ArsA Predicted ATPase 62.0 62 0.0014 33.4 10.0 39 122-160 1-40 (322)
219 TIGR02852 spore_dpaB dipicolin 61.0 12 0.00025 35.4 4.2 44 123-166 1-44 (187)
220 TIGR02700 flavo_MJ0208 archaeo 61.0 12 0.00025 36.7 4.5 47 124-170 1-49 (234)
221 TIGR00708 cobA cob(I)alamin ad 60.9 1.1E+02 0.0023 28.6 10.5 53 125-177 8-66 (173)
222 COG1618 Predicted nucleotide k 60.7 26 0.00056 32.3 6.1 57 121-177 4-60 (179)
223 PF01075 Glyco_transf_9: Glyco 60.6 8.4 0.00018 37.6 3.4 94 373-467 103-208 (247)
224 PRK12921 2-dehydropantoate 2-r 59.7 12 0.00026 37.9 4.5 47 123-174 1-47 (305)
225 COG0552 FtsY Signal recognitio 59.2 38 0.00081 34.9 7.7 60 121-180 138-207 (340)
226 PRK04885 ppnK inorganic polyph 58.9 16 0.00035 36.5 5.1 56 440-512 34-95 (265)
227 PRK08229 2-dehydropantoate 2-r 58.6 11 0.00025 38.9 4.2 49 122-175 2-50 (341)
228 cd01424 MGS_CPS_II Methylglyox 58.5 48 0.001 28.0 7.3 84 134-256 10-100 (110)
229 TIGR02699 archaeo_AfpA archaeo 58.2 15 0.00033 34.2 4.4 44 124-168 1-46 (174)
230 PRK06522 2-dehydropantoate 2-r 58.1 11 0.00024 38.1 3.9 45 123-172 1-46 (304)
231 PRK13982 bifunctional SbtC-lik 58.0 21 0.00045 38.9 6.0 55 120-176 254-320 (475)
232 PRK03378 ppnK inorganic polyph 57.7 76 0.0016 32.3 9.7 99 390-512 19-121 (292)
233 PF07429 Glyco_transf_56: 4-al 57.6 1.4E+02 0.003 31.1 11.4 79 425-508 245-331 (360)
234 TIGR00421 ubiX_pad polyprenyl 57.5 12 0.00027 35.1 3.7 43 124-167 1-43 (181)
235 PLN02939 transferase, transfer 57.3 19 0.00041 42.4 5.8 41 119-159 478-524 (977)
236 PF01012 ETF: Electron transfe 57.2 69 0.0015 29.1 8.7 105 124-258 1-121 (164)
237 PRK01710 murD UDP-N-acetylmura 57.1 55 0.0012 35.5 9.3 31 122-157 14-44 (458)
238 COG0771 MurD UDP-N-acetylmuram 56.7 64 0.0014 34.8 9.4 34 122-160 7-40 (448)
239 TIGR00640 acid_CoA_mut_C methy 56.4 29 0.00062 30.7 5.7 56 122-177 2-61 (132)
240 PRK14573 bifunctional D-alanyl 56.0 51 0.0011 38.7 9.4 31 122-156 4-34 (809)
241 PF02310 B12-binding: B12 bind 55.2 27 0.00058 29.8 5.3 36 123-158 1-36 (121)
242 cd01423 MGS_CPS_I_III Methylgl 55.2 69 0.0015 27.3 7.8 46 127-175 4-49 (116)
243 TIGR01081 mpl UDP-N-acetylmura 55.2 52 0.0011 35.5 8.7 28 125-156 2-29 (448)
244 TIGR02113 coaC_strep phosphopa 54.9 8.6 0.00019 36.0 2.2 43 124-167 2-44 (177)
245 PRK03501 ppnK inorganic polyph 54.6 57 0.0012 32.6 8.1 57 440-512 38-99 (264)
246 COG2327 WcaK Polysaccharide py 53.5 73 0.0016 33.6 8.9 86 425-515 266-357 (385)
247 PF05693 Glycogen_syn: Glycoge 52.8 14 0.00031 40.9 3.8 85 434-523 462-566 (633)
248 COG1748 LYS9 Saccharopine dehy 52.7 54 0.0012 34.7 7.9 50 122-176 1-55 (389)
249 TIGR02990 ectoine_eutA ectoine 52.4 71 0.0015 31.4 8.3 43 135-177 104-153 (239)
250 PRK10867 signal recognition pa 51.5 69 0.0015 34.5 8.7 56 121-176 99-163 (433)
251 PRK01911 ppnK inorganic polyph 51.5 29 0.00062 35.3 5.5 104 390-512 14-122 (292)
252 PRK13931 stationary phase surv 51.2 1.5E+02 0.0032 29.6 10.4 38 123-162 1-42 (261)
253 TIGR02193 heptsyl_trn_I lipopo 51.1 82 0.0018 32.0 9.0 28 230-259 254-281 (319)
254 TIGR01082 murC UDP-N-acetylmur 51.0 62 0.0014 34.9 8.5 29 124-156 1-29 (448)
255 TIGR02370 pyl_corrinoid methyl 50.8 1.7E+02 0.0036 27.8 10.4 55 122-176 84-142 (197)
256 cd01980 Chlide_reductase_Y Chl 50.7 1.3E+02 0.0027 32.3 10.6 26 230-258 350-375 (416)
257 PRK02006 murD UDP-N-acetylmura 50.7 85 0.0018 34.4 9.6 30 123-157 8-37 (498)
258 PF01210 NAD_Gly3P_dh_N: NAD-d 50.6 9.8 0.00021 34.7 1.9 32 124-160 1-32 (157)
259 KOG0780 Signal recognition par 50.5 77 0.0017 33.4 8.3 51 125-175 104-162 (483)
260 PF04413 Glycos_transf_N: 3-De 49.9 50 0.0011 31.1 6.6 91 130-259 28-126 (186)
261 PRK01077 cobyrinic acid a,c-di 49.6 1.8E+02 0.004 31.5 11.8 35 124-158 5-40 (451)
262 PRK13011 formyltetrahydrofolat 49.6 1.1E+02 0.0024 30.9 9.4 55 119-176 86-144 (286)
263 PF07355 GRDB: Glycine/sarcosi 49.4 88 0.0019 32.4 8.5 39 439-485 266-304 (349)
264 PF05368 NmrA: NmrA-like famil 49.2 1.3E+02 0.0028 28.9 9.7 48 127-176 1-51 (233)
265 PRK14106 murD UDP-N-acetylmura 48.8 93 0.002 33.4 9.4 32 123-159 6-37 (450)
266 PRK05784 phosphoribosylamine-- 48.6 96 0.0021 34.0 9.4 31 123-158 1-33 (486)
267 PLN02935 Bifunctional NADH kin 48.5 74 0.0016 34.8 8.2 55 440-511 261-319 (508)
268 PRK03708 ppnK inorganic polyph 48.2 28 0.0006 35.1 4.8 98 389-512 13-114 (277)
269 PRK00771 signal recognition pa 48.1 80 0.0017 34.1 8.5 42 121-162 94-135 (437)
270 cd02071 MM_CoA_mut_B12_BD meth 47.4 66 0.0014 27.8 6.5 54 124-177 1-58 (122)
271 COG2910 Putative NADH-flavin r 46.7 25 0.00055 33.0 3.8 34 123-160 1-34 (211)
272 PF02374 ArsA_ATPase: Anion-tr 46.7 33 0.00071 35.1 5.1 40 123-162 1-41 (305)
273 KOG0832 Mitochondrial/chloropl 46.5 2.6E+02 0.0056 27.3 10.5 110 132-264 90-209 (251)
274 TIGR01501 MthylAspMutase methy 46.2 31 0.00067 30.7 4.2 54 123-176 2-59 (134)
275 PRK08293 3-hydroxybutyryl-CoA 45.8 2.2E+02 0.0048 28.6 11.0 33 122-159 3-35 (287)
276 PRK06395 phosphoribosylamine-- 45.8 1.2E+02 0.0026 32.7 9.5 32 122-158 2-33 (435)
277 COG1893 ApbA Ketopantoate redu 45.8 28 0.00061 35.6 4.5 50 123-177 1-50 (307)
278 PRK01185 ppnK inorganic polyph 45.3 40 0.00087 33.9 5.4 55 441-512 52-107 (271)
279 TIGR00877 purD phosphoribosyla 45.1 1.2E+02 0.0027 32.2 9.6 35 123-162 1-35 (423)
280 COG1484 DnaC DNA replication p 45.1 25 0.00054 34.9 3.9 47 121-167 104-150 (254)
281 PRK02231 ppnK inorganic polyph 45.0 1.8E+02 0.004 29.2 10.0 92 397-512 5-101 (272)
282 TIGR01285 nifN nitrogenase mol 45.0 1.4E+02 0.003 32.2 9.9 25 230-257 373-397 (432)
283 TIGR00521 coaBC_dfp phosphopan 44.7 27 0.00058 37.1 4.2 46 122-168 3-48 (390)
284 TIGR01425 SRP54_euk signal rec 44.7 1.5E+02 0.0033 31.8 9.9 54 122-175 100-161 (429)
285 PRK09620 hypothetical protein; 44.3 31 0.00066 33.7 4.3 47 366-412 134-181 (229)
286 TIGR01283 nifE nitrogenase mol 44.1 1.9E+02 0.0041 31.4 10.8 26 229-257 394-419 (456)
287 PF13460 NAD_binding_10: NADH( 44.1 51 0.0011 30.2 5.7 47 127-176 1-47 (183)
288 COG0052 RpsB Ribosomal protein 44.0 3.3E+02 0.0072 26.9 13.4 35 230-264 156-192 (252)
289 PRK14075 pnk inorganic polypho 43.8 48 0.001 33.0 5.7 86 389-512 10-96 (256)
290 PRK00141 murD UDP-N-acetylmura 43.1 85 0.0018 34.2 8.0 31 122-157 15-45 (473)
291 PF02702 KdpD: Osmosensitive K 42.4 58 0.0013 31.1 5.6 55 121-175 4-61 (211)
292 COG0151 PurD Phosphoribosylami 42.4 1E+02 0.0023 32.7 8.0 29 123-156 1-29 (428)
293 PRK00885 phosphoribosylamine-- 42.4 71 0.0015 34.1 7.2 31 123-158 1-32 (420)
294 COG1797 CobB Cobyrinic acid a, 41.3 77 0.0017 33.9 6.8 38 124-161 2-41 (451)
295 CHL00194 ycf39 Ycf39; Provisio 40.8 72 0.0016 32.5 6.7 49 123-175 1-50 (317)
296 KOG1387 Glycosyltransferase [C 40.8 3.3E+02 0.0071 28.4 10.9 98 422-525 334-445 (465)
297 PRK11199 tyrA bifunctional cho 40.4 1.9E+02 0.0042 30.4 9.9 34 121-159 97-131 (374)
298 KOG3339 Predicted glycosyltran 40.1 1.4E+02 0.003 28.1 7.5 27 122-149 38-64 (211)
299 cd00561 CobA_CobO_BtuR ATP:cor 39.9 3E+02 0.0065 25.2 10.1 53 125-177 5-64 (159)
300 PLN02929 NADH kinase 39.8 41 0.00089 34.3 4.5 96 391-511 33-138 (301)
301 PRK14478 nitrogenase molybdenu 39.3 2.5E+02 0.0054 30.7 10.9 25 229-256 392-416 (475)
302 PRK06849 hypothetical protein; 39.1 48 0.001 35.0 5.2 36 121-160 3-38 (389)
303 TIGR02015 BchY chlorophyllide 38.9 2E+02 0.0044 30.9 9.9 28 228-258 353-380 (422)
304 PRK06027 purU formyltetrahydro 38.8 1.9E+02 0.004 29.3 9.1 57 118-177 85-145 (286)
305 COG2185 Sbm Methylmalonyl-CoA 38.8 45 0.00097 30.0 4.0 39 120-158 10-48 (143)
306 COG2085 Predicted dinucleotide 38.6 47 0.001 31.9 4.4 34 122-160 1-34 (211)
307 PRK01390 murD UDP-N-acetylmura 38.6 1.3E+02 0.0028 32.5 8.6 29 123-156 10-38 (460)
308 KOG0023 Alcohol dehydrogenase, 38.5 1E+02 0.0022 31.7 6.8 51 121-176 181-233 (360)
309 PRK13982 bifunctional SbtC-lik 38.1 27 0.00058 38.0 3.0 47 121-168 69-115 (475)
310 cd02070 corrinoid_protein_B12- 37.8 48 0.001 31.5 4.5 55 122-176 82-140 (201)
311 PRK14619 NAD(P)H-dependent gly 37.6 53 0.0011 33.5 5.1 51 121-176 3-56 (308)
312 COG1154 Dxs Deoxyxylulose-5-ph 37.6 2.6E+02 0.0056 31.3 10.3 109 371-508 498-622 (627)
313 TIGR00745 apbA_panE 2-dehydrop 37.4 32 0.0007 34.4 3.4 35 141-175 5-39 (293)
314 PRK02910 light-independent pro 37.3 2.4E+02 0.0053 31.2 10.5 27 229-258 361-387 (519)
315 cd01977 Nitrogenase_VFe_alpha 37.2 1.9E+02 0.0041 30.9 9.4 25 230-257 358-382 (415)
316 PF07991 IlvN: Acetohydroxy ac 36.7 42 0.00091 30.9 3.6 50 122-176 4-55 (165)
317 COG0240 GpsA Glycerol-3-phosph 36.6 42 0.00092 34.5 4.0 33 122-159 1-33 (329)
318 TIGR00959 ffh signal recogniti 36.4 1.4E+02 0.0031 32.1 8.2 54 122-175 99-161 (428)
319 PRK05693 short chain dehydroge 36.3 1.5E+02 0.0034 29.1 8.2 33 123-158 1-33 (274)
320 PRK04148 hypothetical protein; 36.1 78 0.0017 28.1 5.1 49 121-175 16-65 (134)
321 PRK12743 oxidoreductase; Provi 35.9 2E+02 0.0043 27.9 8.8 33 123-158 2-34 (256)
322 cd01968 Nitrogenase_NifE_I Nit 35.9 3.4E+02 0.0074 28.8 11.1 26 229-257 355-380 (410)
323 PRK14076 pnk inorganic polypho 35.7 63 0.0014 36.2 5.6 98 390-512 304-406 (569)
324 COG0059 IlvC Ketol-acid reduct 35.0 49 0.0011 33.6 4.0 51 121-176 17-69 (338)
325 PRK02645 ppnK inorganic polyph 35.0 1.5E+02 0.0032 30.4 7.7 68 391-469 18-89 (305)
326 TIGR01380 glut_syn glutathione 34.7 61 0.0013 33.2 4.9 39 123-161 1-42 (312)
327 CHL00072 chlL photochlorophyll 34.3 58 0.0012 33.0 4.6 36 123-158 1-36 (290)
328 PRK00207 sulfur transfer compl 34.1 67 0.0015 28.2 4.4 37 123-159 1-41 (128)
329 COG0489 Mrp ATPases involved i 33.9 3.2E+02 0.0069 27.2 9.8 35 122-156 56-92 (265)
330 PRK05282 (alpha)-aspartyl dipe 33.5 3.3E+02 0.0071 26.7 9.6 83 366-467 23-119 (233)
331 KOG2836 Protein tyrosine phosp 33.2 3.5E+02 0.0076 24.1 8.6 55 121-178 15-71 (173)
332 COG3349 Uncharacterized conser 33.1 38 0.00081 36.8 3.1 31 123-158 1-31 (485)
333 PF02558 ApbA: Ketopantoate re 32.9 32 0.00068 30.7 2.3 37 140-176 11-47 (151)
334 TIGR01862 N2-ase-Ialpha nitrog 32.9 3.4E+02 0.0074 29.3 10.6 25 230-257 387-411 (443)
335 PF02350 Epimerase_2: UDP-N-ac 32.8 1.4E+02 0.003 31.1 7.3 30 230-259 67-99 (346)
336 PF03446 NAD_binding_2: NAD bi 32.5 41 0.00089 30.7 3.0 45 122-171 1-46 (163)
337 TIGR00379 cobB cobyrinic acid 32.5 5.1E+02 0.011 28.0 11.8 34 125-158 2-36 (449)
338 PRK12446 undecaprenyldiphospho 32.4 2E+02 0.0043 30.0 8.4 28 440-467 90-120 (352)
339 cd01974 Nitrogenase_MoFe_beta 32.3 3.5E+02 0.0075 29.1 10.5 27 229-258 376-402 (435)
340 PRK14477 bifunctional nitrogen 32.0 3.7E+02 0.0079 32.2 11.4 26 230-258 389-414 (917)
341 PRK08303 short chain dehydroge 31.9 2.1E+02 0.0045 29.1 8.3 32 124-158 9-40 (305)
342 cd01965 Nitrogenase_MoFe_beta_ 31.8 2.3E+02 0.0051 30.3 9.1 27 228-257 369-395 (428)
343 PF07302 AroM: AroM protein; 31.7 66 0.0014 31.2 4.2 30 227-256 175-207 (221)
344 COG0297 GlgA Glycogen synthase 31.6 4.7E+02 0.01 28.7 11.3 126 377-508 295-440 (487)
345 TIGR01087 murD UDP-N-acetylmur 31.4 2.2E+02 0.0049 30.4 8.9 29 124-157 1-29 (433)
346 PRK02705 murD UDP-N-acetylmura 31.3 2.7E+02 0.0058 30.0 9.6 45 124-173 2-52 (459)
347 cd03466 Nitrogenase_NifN_2 Nit 31.2 2.9E+02 0.0063 29.6 9.7 26 229-257 371-396 (429)
348 TIGR00730 conserved hypothetic 31.2 2.8E+02 0.006 25.9 8.3 115 365-485 22-153 (178)
349 COG1938 Archaeal enzymes of AT 31.0 5.3E+02 0.011 25.4 11.5 83 391-474 93-184 (244)
350 PF00551 Formyl_trans_N: Formy 31.0 1.2E+02 0.0026 28.2 5.9 27 123-152 1-27 (181)
351 PRK03803 murD UDP-N-acetylmura 30.7 2.9E+02 0.0062 29.7 9.6 28 125-157 9-36 (448)
352 COG2084 MmsB 3-hydroxyisobutyr 30.5 65 0.0014 32.6 4.2 47 123-174 1-49 (286)
353 cd08170 GlyDH Glycerol dehydro 30.3 2E+02 0.0044 29.8 8.1 33 229-261 76-111 (351)
354 cd02032 Bchl_like This family 30.3 71 0.0015 31.6 4.5 36 123-158 1-36 (267)
355 PRK05234 mgsA methylglyoxal sy 30.2 1.3E+02 0.0028 27.0 5.6 51 121-175 3-56 (142)
356 PRK07206 hypothetical protein; 30.1 2.2E+02 0.0048 30.1 8.6 34 122-159 1-34 (416)
357 COG2894 MinD Septum formation 30.0 91 0.002 30.3 4.8 38 122-159 1-40 (272)
358 TIGR01012 Sa_S2_E_A ribosomal 29.9 1.8E+02 0.0039 27.7 6.8 35 230-264 108-144 (196)
359 TIGR02114 coaB_strep phosphopa 29.5 54 0.0012 31.9 3.4 47 366-412 139-186 (227)
360 PRK10416 signal recognition pa 29.5 4.4E+02 0.0095 27.1 10.2 54 122-175 114-175 (318)
361 PLN00016 RNA-binding protein; 29.5 65 0.0014 33.8 4.3 39 120-160 50-90 (378)
362 PF15603 Imm45: Immunity prote 29.4 79 0.0017 25.5 3.7 56 26-86 22-82 (82)
363 PLN02496 probable phosphopanto 28.8 83 0.0018 30.3 4.4 48 121-170 18-65 (209)
364 COG0452 Dfp Phosphopantothenoy 28.6 64 0.0014 34.3 3.9 52 123-175 5-56 (392)
365 TIGR03499 FlhF flagellar biosy 28.5 3.1E+02 0.0067 27.5 8.8 39 124-162 196-236 (282)
366 PRK09739 hypothetical protein; 28.4 1.3E+02 0.0027 28.5 5.7 37 121-157 2-41 (199)
367 PRK01372 ddl D-alanine--D-alan 28.3 6.1E+02 0.013 25.3 13.1 49 122-170 4-57 (304)
368 PLN02727 NAD kinase 28.3 2.8E+02 0.0061 32.8 9.1 59 437-512 739-801 (986)
369 PF01380 SIS: SIS domain SIS d 28.2 1.6E+02 0.0035 25.0 6.0 43 132-174 62-104 (131)
370 TIGR01281 DPOR_bchL light-inde 27.9 83 0.0018 31.1 4.5 34 123-156 1-34 (268)
371 cd01981 Pchlide_reductase_B Pc 27.8 4.4E+02 0.0096 28.2 10.4 26 230-258 370-395 (430)
372 PRK08265 short chain dehydroge 27.7 2.2E+02 0.0048 27.8 7.6 32 124-158 7-38 (261)
373 PRK06947 glucose-1-dehydrogena 27.7 3.2E+02 0.0069 26.2 8.6 34 122-158 1-34 (248)
374 PRK14476 nitrogenase molybdenu 27.6 3.2E+02 0.0069 29.7 9.2 25 230-257 371-395 (455)
375 PF10649 DUF2478: Protein of u 27.6 4.8E+02 0.01 23.9 10.6 35 126-160 2-37 (159)
376 PRK03767 NAD(P)H:quinone oxido 27.5 1E+02 0.0022 29.2 4.9 37 122-158 1-39 (200)
377 PLN02256 arogenate dehydrogena 27.4 83 0.0018 32.1 4.5 49 117-170 31-79 (304)
378 CHL00076 chlB photochlorophyll 27.3 1.8E+02 0.0038 32.2 7.3 28 228-258 372-399 (513)
379 PRK04308 murD UDP-N-acetylmura 27.3 5.1E+02 0.011 27.7 10.9 30 123-157 6-35 (445)
380 PRK12481 2-deoxy-D-gluconate 3 27.3 2.8E+02 0.0061 26.8 8.2 32 124-158 9-40 (251)
381 PRK00094 gpsA NAD(P)H-dependen 27.2 62 0.0013 33.0 3.5 33 122-159 1-33 (325)
382 PRK06179 short chain dehydroge 26.9 3.4E+02 0.0074 26.4 8.8 32 125-159 6-37 (270)
383 PRK09423 gldA glycerol dehydro 26.8 2.3E+02 0.005 29.6 7.8 33 229-261 83-118 (366)
384 cd00861 ProRS_anticodon_short 26.8 1.2E+02 0.0025 24.3 4.5 56 122-177 1-62 (94)
385 PRK12311 rpsB 30S ribosomal pr 26.8 7.3E+02 0.016 25.7 14.2 35 230-264 152-188 (326)
386 COG4088 Predicted nucleotide k 26.8 67 0.0014 31.0 3.2 37 124-160 3-39 (261)
387 COG2099 CobK Precorrin-6x redu 26.8 1.5E+02 0.0033 29.3 5.8 28 440-467 195-228 (257)
388 PRK10017 colanic acid biosynth 26.7 2.5E+02 0.0055 30.2 8.2 33 438-470 114-157 (426)
389 PF00289 CPSase_L_chain: Carba 26.7 42 0.00091 28.7 1.8 64 394-457 14-88 (110)
390 PLN03064 alpha,alpha-trehalose 26.7 2.6E+02 0.0056 33.4 8.7 101 428-538 443-557 (934)
391 PF09001 DUF1890: Domain of un 26.5 47 0.001 29.5 2.0 33 136-168 13-45 (139)
392 PF00448 SRP54: SRP54-type pro 26.5 1.5E+02 0.0033 28.0 5.8 52 125-176 4-63 (196)
393 PRK06182 short chain dehydroge 26.5 3.6E+02 0.0079 26.3 8.9 20 139-158 16-35 (273)
394 PRK06756 flavodoxin; Provision 26.4 1.2E+02 0.0026 27.0 4.9 36 122-157 1-37 (148)
395 PRK03202 6-phosphofructokinase 26.3 3.6E+02 0.0078 27.8 8.8 117 122-257 1-122 (320)
396 TIGR00639 PurN phosphoribosylg 26.1 4.3E+02 0.0094 24.9 8.8 51 123-176 1-57 (190)
397 cd02072 Glm_B12_BD B12 binding 26.1 88 0.0019 27.6 3.7 53 124-176 1-57 (128)
398 TIGR01284 alt_nitrog_alph nitr 26.1 2.9E+02 0.0063 30.0 8.6 25 230-257 395-419 (457)
399 PRK06114 short chain dehydroge 26.0 3.6E+02 0.0078 26.0 8.7 32 124-158 9-40 (254)
400 PRK07066 3-hydroxybutyryl-CoA 25.9 7.4E+02 0.016 25.5 11.4 33 122-159 7-39 (321)
401 PRK04020 rps2P 30S ribosomal p 25.8 2.3E+02 0.0049 27.2 6.7 35 230-264 114-150 (204)
402 PRK08535 translation initiatio 25.8 3.6E+02 0.0077 27.6 8.7 18 242-259 213-230 (310)
403 PRK15469 ghrA bifunctional gly 25.8 5.4E+02 0.012 26.3 10.1 70 374-456 136-205 (312)
404 PF01695 IstB_IS21: IstB-like 25.8 1E+02 0.0022 28.7 4.4 46 122-167 47-92 (178)
405 KOG2380 Prephenate dehydrogena 25.7 78 0.0017 32.7 3.7 53 119-176 49-101 (480)
406 TIGR01830 3oxo_ACP_reduc 3-oxo 25.6 2.5E+02 0.0054 26.6 7.4 28 130-159 4-31 (239)
407 PRK02318 mannitol-1-phosphate 25.6 60 0.0013 34.3 3.1 42 123-170 1-45 (381)
408 KOG3125 Thymidine kinase [Nucl 25.5 4.3E+02 0.0093 25.3 8.2 91 375-487 26-134 (234)
409 PRK14618 NAD(P)H-dependent gly 25.4 77 0.0017 32.6 3.9 33 122-159 4-36 (328)
410 PRK03369 murD UDP-N-acetylmura 25.4 2.7E+02 0.0058 30.5 8.3 29 123-156 13-41 (488)
411 cd02069 methionine_synthase_B1 25.3 1.1E+02 0.0023 29.6 4.5 56 121-176 87-146 (213)
412 PRK05720 mtnA methylthioribose 25.1 3.2E+02 0.0069 28.5 8.2 19 241-259 249-267 (344)
413 COG4007 Predicted dehydrogenas 25.0 63 0.0014 32.0 2.8 36 141-176 35-76 (340)
414 TIGR01832 kduD 2-deoxy-D-gluco 24.8 3.3E+02 0.007 26.1 8.1 33 124-159 6-38 (248)
415 PRK05772 translation initiatio 24.8 3.9E+02 0.0084 28.1 8.8 18 242-259 271-288 (363)
416 PRK10481 hypothetical protein; 24.7 1.4E+02 0.003 29.1 5.2 29 228-256 180-211 (224)
417 cd01018 ZntC Metal binding pro 24.6 6.8E+02 0.015 24.7 10.5 77 150-258 169-247 (266)
418 COG1763 MobB Molybdopterin-gua 24.5 1.5E+02 0.0032 27.3 5.0 39 122-160 1-40 (161)
419 TIGR00725 conserved hypothetic 24.5 5.4E+02 0.012 23.4 13.9 97 365-469 21-123 (159)
420 TIGR00524 eIF-2B_rel eIF-2B al 24.5 3.3E+02 0.0072 27.8 8.2 17 243-259 223-239 (303)
421 TIGR03325 BphB_TodD cis-2,3-di 24.4 2.5E+02 0.0054 27.3 7.2 32 124-158 6-37 (262)
422 PRK05246 glutathione synthetas 24.4 1.2E+02 0.0026 31.1 5.0 40 122-161 1-43 (316)
423 TIGR00460 fmt methionyl-tRNA f 24.3 1.1E+02 0.0023 31.5 4.6 30 123-157 1-30 (313)
424 TIGR00064 ftsY signal recognit 24.1 2.6E+02 0.0055 28.0 7.2 52 124-175 74-133 (272)
425 PRK07856 short chain dehydroge 24.0 3.1E+02 0.0068 26.4 7.8 33 124-159 7-39 (252)
426 COG0569 TrkA K+ transport syst 24.0 77 0.0017 30.8 3.3 32 123-159 1-32 (225)
427 TIGR01007 eps_fam capsular exo 23.7 1.4E+02 0.003 28.1 5.0 36 123-158 17-54 (204)
428 PF03721 UDPG_MGDP_dh_N: UDP-g 23.7 1.6E+02 0.0035 27.6 5.3 32 123-159 1-32 (185)
429 PRK12828 short chain dehydroge 23.5 4.7E+02 0.01 24.6 8.9 27 130-158 13-39 (239)
430 PRK12826 3-ketoacyl-(acyl-carr 23.4 3.2E+02 0.0068 26.1 7.7 29 129-159 11-39 (251)
431 cd01976 Nitrogenase_MoFe_alpha 23.4 1.5E+02 0.0032 31.9 5.6 27 229-258 368-394 (421)
432 PRK06484 short chain dehydroge 23.4 2.4E+02 0.0051 30.9 7.5 32 124-158 6-37 (520)
433 PRK00881 purH bifunctional pho 23.3 1.6E+02 0.0035 32.3 5.8 48 122-175 4-51 (513)
434 TIGR00640 acid_CoA_mut_C methy 23.2 2.8E+02 0.0061 24.4 6.5 60 122-181 53-118 (132)
435 COG0300 DltE Short-chain dehyd 23.0 4.5E+02 0.0097 26.3 8.5 34 123-159 6-39 (265)
436 PRK05708 2-dehydropantoate 2-r 23.0 1.2E+02 0.0025 30.9 4.6 47 122-173 2-50 (305)
437 PRK03673 hypothetical protein; 22.9 6.9E+02 0.015 26.6 10.4 36 122-157 1-41 (396)
438 PRK04761 ppnK inorganic polyph 22.9 98 0.0021 30.6 3.8 52 441-508 25-80 (246)
439 TIGR00511 ribulose_e2b2 ribose 22.9 4.2E+02 0.0092 27.0 8.6 18 242-259 208-225 (301)
440 COG2159 Predicted metal-depend 22.8 4.2E+02 0.009 26.9 8.5 112 348-467 99-222 (293)
441 COG0451 WcaG Nucleoside-diphos 22.8 1.1E+02 0.0023 30.7 4.3 30 128-159 4-33 (314)
442 PRK07523 gluconate 5-dehydroge 22.8 3.4E+02 0.0074 26.1 7.8 21 139-159 23-43 (255)
443 PRK07023 short chain dehydroge 22.8 1.9E+02 0.0042 27.7 6.0 35 122-160 1-35 (243)
444 COG3640 CooC CO dehydrogenase 22.8 1.8E+02 0.0038 28.7 5.3 50 123-172 1-51 (255)
445 PRK07889 enoyl-(acyl carrier p 22.7 3E+02 0.0064 26.8 7.4 31 124-157 8-40 (256)
446 PRK06463 fabG 3-ketoacyl-(acyl 22.7 5.8E+02 0.013 24.5 9.5 33 124-159 8-40 (255)
447 PRK06988 putative formyltransf 22.6 1.5E+02 0.0032 30.4 5.3 32 122-158 2-33 (312)
448 PRK08125 bifunctional UDP-gluc 22.6 3.1E+02 0.0068 31.2 8.5 32 123-159 1-33 (660)
449 PRK07806 short chain dehydroge 22.5 5.6E+02 0.012 24.3 9.3 19 140-158 20-38 (248)
450 PRK12315 1-deoxy-D-xylulose-5- 22.5 4.5E+02 0.0098 29.5 9.5 59 440-508 511-580 (581)
451 PRK13010 purU formyltetrahydro 22.4 4.5E+02 0.0097 26.6 8.6 55 120-177 91-149 (289)
452 PRK05867 short chain dehydroge 22.4 4.1E+02 0.009 25.5 8.3 32 124-158 10-41 (253)
453 PRK11519 tyrosine kinase; Prov 22.4 9.5E+02 0.021 27.8 12.3 37 122-158 525-563 (719)
454 PRK06194 hypothetical protein; 22.4 3.1E+02 0.0068 27.0 7.6 32 124-158 7-38 (287)
455 cd08187 BDH Butanol dehydrogen 22.3 87 0.0019 33.0 3.6 30 440-470 85-137 (382)
456 PLN02712 arogenate dehydrogena 22.3 1.4E+02 0.003 34.2 5.4 46 120-170 367-412 (667)
457 PRK10427 putative PTS system f 22.3 2.2E+02 0.0048 24.5 5.4 39 122-160 2-43 (114)
458 PF13450 NAD_binding_8: NAD(P) 22.3 97 0.0021 23.7 2.9 18 140-157 9-26 (68)
459 PRK06719 precorrin-2 dehydroge 22.2 1.4E+02 0.0031 27.1 4.6 37 121-162 12-48 (157)
460 PF06418 CTP_synth_N: CTP synt 22.2 1.2E+02 0.0027 30.2 4.3 35 123-157 1-38 (276)
461 cd03146 GAT1_Peptidase_E Type 22.2 6.2E+02 0.013 24.1 9.2 85 364-468 17-121 (212)
462 cd08171 GlyDH-like2 Glycerol d 22.2 3E+02 0.0065 28.5 7.5 34 228-261 76-112 (345)
463 PRK05993 short chain dehydroge 22.1 2.1E+02 0.0045 28.3 6.2 51 122-175 3-54 (277)
464 PRK14620 NAD(P)H-dependent gly 22.1 83 0.0018 32.3 3.3 32 123-159 1-32 (326)
465 PLN02712 arogenate dehydrogena 22.0 1.4E+02 0.003 34.2 5.4 47 120-171 50-96 (667)
466 TIGR00512 salvage_mtnA S-methy 22.0 4E+02 0.0086 27.6 8.2 19 241-259 249-267 (331)
467 TIGR03172 probable selenium-de 21.9 1.1E+02 0.0023 30.0 3.8 34 127-160 2-35 (232)
468 PF01008 IF-2B: Initiation fac 21.9 2.7E+02 0.0059 27.8 7.0 20 240-259 199-218 (282)
469 PRK06371 translation initiatio 21.8 4.2E+02 0.0092 27.4 8.3 18 242-259 240-257 (329)
470 PF02635 DrsE: DsrE/DsrF-like 21.7 2.7E+02 0.0058 23.1 6.1 45 123-167 1-51 (122)
471 PF02142 MGS: MGS-like domain 21.7 66 0.0014 26.4 2.0 35 139-175 2-36 (95)
472 cd06191 FNR_iron_sulfur_bindin 21.5 2.9E+02 0.0064 26.4 7.0 35 122-158 102-138 (231)
473 PF04748 Polysacc_deac_2: Dive 21.5 5.8E+02 0.013 24.5 8.8 117 121-257 21-147 (213)
474 PRK07478 short chain dehydroge 21.5 4.7E+02 0.01 25.1 8.5 32 124-158 7-38 (254)
475 PRK08334 translation initiatio 21.5 4.3E+02 0.0093 27.7 8.3 17 242-258 263-279 (356)
476 PRK08277 D-mannonate oxidoredu 21.4 4.4E+02 0.0096 25.7 8.4 32 124-158 11-42 (278)
477 TIGR03837 efp_adjacent_2 conse 21.3 1.5E+02 0.0033 31.0 4.9 40 426-466 243-285 (371)
478 PF04244 DPRP: Deoxyribodipyri 21.3 99 0.0022 30.1 3.4 25 135-159 47-71 (224)
479 cd06183 cyt_b5_reduct_like Cyt 21.3 2.3E+02 0.0049 27.1 6.1 33 123-157 105-140 (234)
480 TIGR03026 NDP-sugDHase nucleot 21.2 1.1E+02 0.0023 32.8 4.0 31 123-158 1-31 (411)
481 PF10933 DUF2827: Protein of u 21.2 5.9E+02 0.013 26.7 9.0 89 426-528 254-353 (364)
482 COG0297 GlgA Glycogen synthase 21.2 1E+02 0.0022 33.8 3.8 36 123-158 1-42 (487)
483 PF08357 SEFIR: SEFIR domain; 21.1 97 0.0021 27.6 3.2 32 124-155 2-35 (150)
484 cd00322 FNR_like Ferredoxin re 21.1 2E+02 0.0043 27.1 5.6 34 123-158 98-133 (223)
485 TIGR01011 rpsB_bact ribosomal 20.9 2.9E+02 0.0064 26.8 6.7 35 230-264 155-191 (225)
486 TIGR01278 DPOR_BchB light-inde 20.9 3.2E+02 0.007 30.1 7.8 29 227-258 361-389 (511)
487 PF12695 Abhydrolase_5: Alpha/ 20.9 2E+02 0.0043 24.6 5.1 34 126-159 2-35 (145)
488 PRK05632 phosphate acetyltrans 20.8 1E+03 0.022 27.3 12.1 35 124-158 4-39 (684)
489 PRK06222 ferredoxin-NADP(+) re 20.8 2E+02 0.0043 28.8 5.7 34 123-158 99-132 (281)
490 cd01985 ETF The electron trans 20.8 6.5E+02 0.014 23.0 10.1 28 230-257 91-121 (181)
491 PRK06129 3-hydroxyacyl-CoA deh 20.8 87 0.0019 31.9 3.1 34 121-159 1-34 (308)
492 cd00316 Oxidoreductase_nitroge 20.8 5.3E+02 0.011 27.0 9.3 26 229-257 347-372 (399)
493 PRK10490 sensor protein KdpD; 20.7 1.6E+02 0.0034 35.1 5.6 37 120-156 22-58 (895)
494 PRK05703 flhF flagellar biosyn 20.7 5.1E+02 0.011 27.8 9.0 39 124-162 223-263 (424)
495 TIGR01861 ANFD nitrogenase iro 20.6 8E+02 0.017 27.1 10.7 26 229-257 397-422 (513)
496 TIGR01915 npdG NADPH-dependent 20.6 89 0.0019 30.0 3.0 33 123-159 1-33 (219)
497 PF06506 PrpR_N: Propionate ca 20.5 4.6E+02 0.0099 24.1 7.7 122 134-259 17-151 (176)
498 PLN00141 Tic62-NAD(P)-related 20.4 2.2E+02 0.0047 27.7 5.8 36 119-158 14-49 (251)
499 PRK13604 luxD acyl transferase 20.3 1.9E+02 0.004 29.7 5.3 36 121-156 35-70 (307)
500 PF06506 PrpR_N: Propionate ca 20.3 45 0.00097 31.0 0.8 31 440-471 33-63 (176)
No 1
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=6.1e-51 Score=433.58 Aligned_cols=394 Identities=39% Similarity=0.693 Sum_probs=306.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCC-CCChh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSG-PSEIP 201 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~ 201 (568)
|||+|++.|+.||++|+++||++|+++||+|+|+|++.++..++..|++|++++.+.......... ....+.. .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAAGLEFVPVGGDPDELLASPER-NAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHcCCceeeCCCCHHHHHhhhhh-cccccccchHHHH
Confidence 899999999999999999999999999999999999999999999999999998765432211100 0000000 00010
Q ss_pred HH----HHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCC
Q 008369 202 IQ----RNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQ 277 (568)
Q Consensus 202 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~ 277 (568)
.. ......++..++. ..+.++||+||+|+..+++..+|+++|||++.+.+.|+.+.+.+++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--------~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~----- 146 (401)
T cd03784 80 GALRLLRREAEAMLDDLVA--------AARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAFPPPL----- 146 (401)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccCCCcc-----
Confidence 11 1111222222222 233568999999999999999999999999999999988877777766
Q ss_pred ccchhhHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceecc
Q 008369 278 PVAYRLSYQIVDA-LIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLD 356 (568)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~ 356 (568)
...+...+..... ..........+.+++ .+++++.... .....+..+.+++.+.+.+.+|+++..++|+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 220 (401)
T cd03784 147 GRANLRLYALLEAELWQDLLGAWLRARRR-RLGLPPLSLL-----DGSDVPELYGFSPAVLPPPPDWPRFDLVTGYGFRD 220 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCCccc-----ccCCCcEEEecCcccCCCCCCccccCcEeCCCCCC
Confidence 1112222222222 222334555666665 6787665431 11233566788888888899999999999866655
Q ss_pred CCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChh
Q 008369 357 LASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHD 436 (568)
Q Consensus 357 ~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~ 436 (568)
.+.....+.++..|++.++|+|||++||....+++.+.+.++++++..+.++|+..|+..... ...++|+.+.+|+||.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~-~~~~~~v~~~~~~p~~ 299 (401)
T cd03784 221 VPYNGPPPPELWLFLAAGRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLGA-EDLPDNVRVVDFVPHD 299 (401)
T ss_pred CCCCCCCCHHHHHHHhCCCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccccc-cCCCCceEEeCCCCHH
Confidence 444445667888999988899999999998778888999999999999999999988765432 3567899999999999
Q ss_pred hhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHHH
Q 008369 437 WLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKVKEHA 516 (568)
Q Consensus 437 ~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~r~~a 516 (568)
++|++||+||||||+||++|++++|+|+|++|++.||+.||+++++.|+|+ .++...+++++|.++|++++++++++++
T Consensus 300 ~ll~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~-~l~~~~~~~~~l~~al~~~l~~~~~~~~ 378 (401)
T cd03784 300 WLLPRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGP-ALDPRELTAERLAAALRRLLDPPSRRRA 378 (401)
T ss_pred HHhhhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCC-CCCcccCCHHHHHHHHHHHhCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 7877778999999999999976788889
Q ss_pred HHHHHHhhcCCcHHHHHHHHHH
Q 008369 517 VELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 517 ~~la~~~~~~~g~~~av~~i~~ 538 (568)
+++++.++..+|...+++.+++
T Consensus 379 ~~~~~~~~~~~g~~~~~~~ie~ 400 (401)
T cd03784 379 AALLRRIREEDGVPSAADVIER 400 (401)
T ss_pred HHHHHHHHhccCHHHHHHHHhh
Confidence 9999999999999999999986
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.8e-46 Score=401.29 Aligned_cols=415 Identities=13% Similarity=0.115 Sum_probs=288.7
Q ss_pred CCeEEEEE-ecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCC-C
Q 008369 121 PPLHIVML-IVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF--KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPS-G 196 (568)
Q Consensus 121 ~~m~Ili~-~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~-~ 196 (568)
...||+.+ |.++.+|..-+-+++++|++|||+||++++... .+.....+++.+.++...+.+...+.+ ...+.. .
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~ 97 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKS-SAVFRKRG 97 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhh-hhHHHhhh
Confidence 34678865 778999999999999999999999999987531 111134567777765444433322211 111000 0
Q ss_pred --CCChhHHHHHHHHHHHHHhhhcCCC-CCCCCC--CCCCcEEEeCCCcccHHHHHHHc-CCCEEEEeccCCC----CCC
Q 008369 197 --PSEIPIQRNQLKEIIYSLLPACKDP-DPDTMV--PFKPDAIIANPPAYGHTHVAESL-KVPLHIIFTMPWT----PTS 266 (568)
Q Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~pDlVI~d~~~~~~~~~A~~l-gIP~v~~~t~p~~----~~~ 266 (568)
.............+...|...+... ..+.++ +.++|+||+|++..|+..+|+.+ ++|+|.+.+.... ...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~ 177 (507)
T PHA03392 98 VVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETM 177 (507)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhh
Confidence 0000000001111111221111111 122333 66899999999999998899999 9998877663322 111
Q ss_pred C-CCCCccc-------CCCccch--hhHHHHHHH---HHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC
Q 008369 267 E-FPHPLSR-------VKQPVAY--RLSYQIVDA---LIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS 333 (568)
Q Consensus 267 ~-~p~p~~~-------~~~~~~~--~~~~~~~~~---~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s 333 (568)
. .|.|.+. ..+.+++ |+.+.+... ..+..+....+++.++.++.. .+.+. ....+....+.++
T Consensus 178 gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~-~~~~~---~l~~~~~l~lvns 253 (507)
T PHA03392 178 GAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPD-TPTIR---ELRNRVQLLFVNV 253 (507)
T ss_pred ccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCC-CCCHH---HHHhCCcEEEEec
Confidence 2 3444333 3344443 333332211 111111133344444333321 11111 1123556677888
Q ss_pred CCCCCCCCCCCCCceEecceeccCCCCCCCChhhHHhhhcCC-CcEEEeCCCCCC--CChHHHHHHHHHHHHHcCceEEE
Q 008369 334 PHLVPKPKDWGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGE-KPIYIGFGSLPV--EEPEKMTEIIVKALEITGHRGII 410 (568)
Q Consensus 334 p~l~p~p~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~-p~VyVsfGS~~~--~~~~~l~~~i~~al~~~~~~~Iv 410 (568)
...+..|++++++++++|++..+.....+.++++.+|+++++ ++|||||||... ..+.++.+.+++|++..++++||
T Consensus 254 ~~~~d~~rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw 333 (507)
T PHA03392 254 HPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLW 333 (507)
T ss_pred CccccCCCCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence 888888999999999999998754333456889999999876 599999999864 35677888889999999999888
Q ss_pred EcCCCCCCCCCCCCceEEEcCCCChhhhh--ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCC
Q 008369 411 NKGWGGLGNLAESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPA 488 (568)
Q Consensus 411 ~~g~~~~~~l~~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~ 488 (568)
..+..... ...|+||++.+|+||.++| ++|++||||||+||++||+++|||+|++|+++||+.||++++++|+|+
T Consensus 334 ~~~~~~~~--~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~- 410 (507)
T PHA03392 334 KYDGEVEA--INLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGR- 410 (507)
T ss_pred EECCCcCc--ccCCCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEE-
Confidence 76533221 2568999999999999999 789999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCC--cHHHHHHHHHHhCCCC
Q 008369 489 PIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENED--GVTGAVKAFYKHFPGK 543 (568)
Q Consensus 489 ~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~--g~~~av~~i~~~l~~~ 543 (568)
.++..++++++|.+||+++| |++|+++|+++++.++++. +.++|++++|..++..
T Consensus 411 ~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 411 ALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred EeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 79888999999999999999 9999999999999999875 7899999999998776
No 3
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.7e-45 Score=387.24 Aligned_cols=382 Identities=22% Similarity=0.284 Sum_probs=276.1
Q ss_pred ecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChhHHHHHHH
Q 008369 129 IVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPIQRNQLK 208 (568)
Q Consensus 129 ~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (568)
..|+.||++|+++||++|+++||+|+|++++.+.+.++..|++|++++...... . .. ..... .........+.
T Consensus 2 ~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~G~~~~~~~~~~~~~-~-~~--~~~~~---~~~~~~~~~~~ 74 (392)
T TIGR01426 2 NIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAAGAEFVLYGSALPPP-D-NP--PENTE---EEPIDIIEKLL 74 (392)
T ss_pred CCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHcCCEEEecCCcCccc-c-cc--ccccC---cchHHHHHHHH
Confidence 468999999999999999999999999999999999999999999997542210 0 00 00000 11111111111
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCCccchhhHH--H
Q 008369 209 EIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAYRLSY--Q 286 (568)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~~~~~~~~~--~ 286 (568)
.......+.+ ...++.++||+||+|+.++++..+|+.+|||++.+++++... ..++++.. +....+.. .
T Consensus 75 ~~~~~~~~~l----~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~ 145 (392)
T TIGR01426 75 DEAEDVLPQL----EEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN-EEFEEMVS----PAGEGSAEEGA 145 (392)
T ss_pred HHHHHHHHHH----HHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc-cccccccc----ccchhhhhhhc
Confidence 1111111111 123345689999999988899999999999999887654322 22333221 00000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--CcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccCCCCCCCC
Q 008369 287 IVDALIWLGIRDMINDFRKKRLNLR--RVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDLASTYEPP 364 (568)
Q Consensus 287 ~~~~~~~~~~~~~in~~r~~~l~l~--~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~~~~~~~~ 364 (568)
.... .+..+.+.+|++|+ .++++ +...+.. .......+..++.+.+.+.+|+++++++||++.+...
T Consensus 146 ~~~~-~~~~~~~~~~~~r~-~~gl~~~~~~~~~~----~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~~~~~----- 214 (392)
T TIGR01426 146 IAER-GLAEYVARLSALLE-EHGITTPPVEFLAA----PRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIGDRKE----- 214 (392)
T ss_pred cccc-hhHHHHHHHHHHHH-HhCCCCCCHHHHhc----CCcCcEEEeCChHhCCCccccCCCeEEECCCCCCccc-----
Confidence 0000 12334566788876 46654 2222211 1111234556677777777899999999998754321
Q ss_pred hhhHHhhh--cCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCC-CCCCCCCCceEEEcCCCChhhhhcc
Q 008369 365 DSLVKWLE--DGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGG-LGNLAESKDFVYLLDNCPHDWLFSR 441 (568)
Q Consensus 365 ~~l~~~L~--~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~-~~~l~~~~~nv~~~~~vP~~~ll~~ 441 (568)
...|.. .++++|||++||+....+. +.+.+++++...++++|++.|+.. ...+...++|+.+.+|+|+.++|++
T Consensus 215 --~~~~~~~~~~~~~v~vs~Gs~~~~~~~-~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll~~ 291 (392)
T TIGR01426 215 --DGSWERPGDGRPVVLISLGTVFNNQPS-FYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEILKK 291 (392)
T ss_pred --cCCCCCCCCCCCEEEEecCccCCCCHH-HHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHHhh
Confidence 112443 3567999999998665555 777779999999999998887653 2334456789999999999999999
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 008369 442 CLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELA 520 (568)
Q Consensus 442 ~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la 520 (568)
||+||||||+||++|++++|+|+|++|.++||+.||+++++.|+|. .+...++++++|.++|+++| |+++++++++++
T Consensus 292 ~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~-~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~ 370 (392)
T TIGR01426 292 ADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGR-HLPPEEVTAEKLREAVLAVLSDPRYAERLRKMR 370 (392)
T ss_pred CCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEE-EeccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 78888899999999999999 999999999999
Q ss_pred HHhhcCCcHHHHHHHHHHhCC
Q 008369 521 KAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 521 ~~~~~~~g~~~av~~i~~~l~ 541 (568)
+.+...+|.+++++.|++.+.
T Consensus 371 ~~~~~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 371 AEIREAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHcCCHHHHHHHHHHhhc
Confidence 999999999999999998764
No 4
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-44 Score=377.07 Aligned_cols=393 Identities=26% Similarity=0.358 Sum_probs=270.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCC-h-HHHHHHHhhcCCCCCCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGD-P-KILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~-~-~~l~~~~~~~~~~~~~~~~~ 199 (568)
+|||++++.|+.||++|+++||++|+++||+|+|+|++.+.++++++|+.|..++.. . ......+.. ....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~ag~~f~~~~~~~~~~~~~~~~~~------~~~~- 73 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAAGLAFVAYPIRDSELATEDGKFA------GVKS- 73 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHhCcceeeccccCChhhhhhhhhh------ccch-
Confidence 599999999999999999999999999999999999999999999999666666542 2 111111110 0000
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCC--CCcccCCC
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFP--HPLSRVKQ 277 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p--~p~~~~~~ 277 (568)
.......+........+ .+.+..||+|+.|.....+ ++++..++|++.....+|+...... .+......
T Consensus 74 ~~~~~~~~~~~~~~~~~--------~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (406)
T COG1819 74 FRRLLQQFKKLIRELLE--------LLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPVGIAG 144 (406)
T ss_pred hHHHhhhhhhhhHHHHH--------HHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccccccc
Confidence 00011222222222111 2334478988887655444 8999999999888777776544333 22222111
Q ss_pred ccchh---hHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-cccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecce
Q 008369 278 PVAYR---LSYQIVDALIWLGIRDMINDFRKKRLNLRR-VTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFC 353 (568)
Q Consensus 278 ~~~~~---~~~~~~~~~~~~~~~~~in~~r~~~l~l~~-~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl 353 (568)
....+ +......+..........+..|. ..++.. .+.+...+...... .+.+.+...+....+|....++||+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~ 221 (406)
T COG1819 145 KLPIPLYPLPPRLVRPLIFARSWLPKLVVRR-NLGLELGLPNIRRLFASGPLL--EIAYTDVLFPPGDRLPFIGPYIGPL 221 (406)
T ss_pred cccccccccChhhccccccchhhhhhhhhhh-hccccccccchHHHhcCCCCc--cccccccccCCCCCCCCCcCccccc
Confidence 11110 11111110000000011122232 111111 00011111111111 1122222211115566677778875
Q ss_pred eccCCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCC
Q 008369 354 FLDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNC 433 (568)
Q Consensus 354 ~~~~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~v 433 (568)
.. ....++..|...++|+|||++||.... .+++++++++++.++.++|++++..+. ....+|+|+++.+|+
T Consensus 222 ~~------~~~~~~~~~~~~d~~~vyvslGt~~~~--~~l~~~~~~a~~~l~~~vi~~~~~~~~-~~~~~p~n~~v~~~~ 292 (406)
T COG1819 222 LG------EAANELPYWIPADRPIVYVSLGTVGNA--VELLAIVLEALADLDVRVIVSLGGARD-TLVNVPDNVIVADYV 292 (406)
T ss_pred cc------cccccCcchhcCCCCeEEEEcCCcccH--HHHHHHHHHHHhcCCcEEEEecccccc-ccccCCCceEEecCC
Confidence 43 333444555677889999999999865 789999999999999999999876333 566789999999999
Q ss_pred ChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 008369 434 PHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKV 512 (568)
Q Consensus 434 P~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~ 512 (568)
||.+++++||+||||||+|||+|||++|||+|++|...||+.||.++++.|+|. .++.+.++++.|+++|+++| |+.|
T Consensus 293 p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~-~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 293 PQLELLPRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGI-ALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred CHHHHhhhcCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCce-ecCcccCCHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999999999999999999999999999999 89999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhCCCC
Q 008369 513 KEHAVELAKAMENEDGVTGAVKAFYKHFPGK 543 (568)
Q Consensus 513 r~~a~~la~~~~~~~g~~~av~~i~~~l~~~ 543 (568)
+++++++++.++.++|.+.+++.+++.....
T Consensus 372 ~~~~~~~~~~~~~~~g~~~~a~~le~~~~~~ 402 (406)
T COG1819 372 RRAAERLAEEFKEEDGPAKAADLLEEFAREK 402 (406)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999977554
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=4e-42 Score=366.74 Aligned_cols=389 Identities=17% Similarity=0.219 Sum_probs=251.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc------CCceeeccCCChHHHHHHHhhcCCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG------AGLEFFPLGGDPKILAGYMVKNKGFLP 194 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~------~Gl~f~~i~~~~~~l~~~~~~~~~~~~ 194 (568)
.+.||+++|++++||++|++.||+.|+.+|+.|||++++.....+.. .++.++.++.. . ..|+.+
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p-~--------~dglp~ 75 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLP-S--------VPGLPS 75 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCC-c--------cCCCCC
Confidence 45799999999999999999999999999999999988765544431 24777777621 0 012211
Q ss_pred CCC--CChh----HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCC
Q 008369 195 SGP--SEIP----IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEF 268 (568)
Q Consensus 195 ~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~ 268 (568)
... .++. .......+.+...+..+. +..++++||+|.+..|+..+|+.+|||++.+++++....+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~ 148 (472)
T PLN02670 76 SAESSTDVPYTKQQLLKKAFDLLEPPLTTFL-------ETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFI 148 (472)
T ss_pred CcccccccchhhHHHHHHHHHHhHHHHHHHH-------HhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHH
Confidence 100 1111 011111111111111111 112589999999999999999999999999987764322111
Q ss_pred CCC----------c--cc---CCC--c--cchhhHHHHHHHHHH------HHHHHHHHHHHHhhcCCCCcccccCCCCCC
Q 008369 269 PHP----------L--SR---VKQ--P--VAYRLSYQIVDALIW------LGIRDMINDFRKKRLNLRRVTYLSGSYSSP 323 (568)
Q Consensus 269 p~p----------~--~~---~~~--~--~~~~~~~~~~~~~~~------~~~~~~in~~r~~~l~l~~~~~~~~~~~~~ 323 (568)
.++ . .. .+. | ....+...-...++. ..........+. .....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------- 215 (472)
T PLN02670 149 GPPSSLMEGGDLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFA----IGGSD--------- 215 (472)
T ss_pred hhhHhhhhcccCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhh----cccCC---------
Confidence 100 0 00 000 0 000010000001110 001111111110 00000
Q ss_pred CCCCeeeecC-CCCCC----C-CCCCCCCceEecceecc--C-CCCCC-C---ChhhHHhhhcCC--CcEEEeCCCCCCC
Q 008369 324 LDVPYAYIWS-PHLVP----K-PKDWGPKIDVVGFCFLD--L-ASTYE-P---PDSLVKWLEDGE--KPIYIGFGSLPVE 388 (568)
Q Consensus 324 ~~~~~~~~~s-p~l~p----~-p~~~~~~v~~vGpl~~~--~-~~~~~-~---~~~l~~~L~~~~--p~VyVsfGS~~~~ 388 (568)
...+++ .++.+ . ...+++++..|||+... . ..... . .+++.+||++++ .+|||||||+...
T Consensus 216 ----gvlvNTf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l 291 (472)
T PLN02670 216 ----VVIIRSSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASL 291 (472)
T ss_pred ----EEEEeCHHHHhHHHHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccC
Confidence 011111 11111 0 11223568999998642 1 11110 1 146899999875 4999999999877
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCC-CC--CCCCCCCce---------EEEcCCCChhhhh--ccccEEEEeCChhHH
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWG-GL--GNLAESKDF---------VYLLDNCPHDWLF--SRCLAVVHHGGAGTT 454 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~-~~--~~l~~~~~n---------v~~~~~vP~~~ll--~~~~~~I~HGG~gT~ 454 (568)
..+++.++ +.+|+.++++|||+.... +. .....+|++ +.+.+|+||.++| +++.+|||||||||+
T Consensus 292 ~~~q~~el-a~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~ 370 (472)
T PLN02670 292 RREEVTEL-ALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSV 370 (472)
T ss_pred CHHHHHHH-HHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchH
Confidence 77776665 999999999999876431 11 101123333 6778999999998 667889999999999
Q ss_pred HHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhcC
Q 008369 455 AAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPV----EEFSLDKLVDAIRFML-DP---KVKEHAVELAKAMENE 526 (568)
Q Consensus 455 ~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~----~~lt~e~L~~aI~~lL-d~---~~r~~a~~la~~~~~~ 526 (568)
+||+++|||+|++|+++||+.||++++++|+|+ .++. ..++.++|+++|+++| ++ +||+||+++++.+++.
T Consensus 371 ~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv-~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~ 449 (472)
T PLN02670 371 VEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGL-EVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDM 449 (472)
T ss_pred HHHHHcCCCEEeCcchhccHHHHHHHHHcCeeE-EeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999999999999998 6754 2489999999999999 65 7999999999999999
Q ss_pred CcHHHHHHHHHHhCCCCC
Q 008369 527 DGVTGAVKAFYKHFPGKK 544 (568)
Q Consensus 527 ~g~~~av~~i~~~l~~~~ 544 (568)
++..++++.|++.|....
T Consensus 450 ~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 450 DRNNRYVDELVHYLRENR 467 (472)
T ss_pred chhHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 6
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.7e-41 Score=362.47 Aligned_cols=384 Identities=16% Similarity=0.152 Sum_probs=243.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC-----CceeeccCCChHHHHHHHhhcCCCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA-----GLEFFPLGGDPKILAGYMVKNKGFLPS 195 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~-----Gl~f~~i~~~~~~l~~~~~~~~~~~~~ 195 (568)
++.||+++|++++||++|++.||+.|+.+|++|||+|++.+...+... |+.|+.++.... .+.
T Consensus 5 ~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~---------~~~--- 72 (448)
T PLN02562 5 QRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQD---------DDP--- 72 (448)
T ss_pred CCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCC---------CCc---
Confidence 346999999999999999999999999999999999988766555443 688887763210 000
Q ss_pred CCCChhHHHHH----HHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCC----
Q 008369 196 GPSEIPIQRNQ----LKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSE---- 267 (568)
Q Consensus 196 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~---- 267 (568)
+..+...... +..-++.++..... .-.+++||+|.+..|+..+|+++|||++.+++++....+.
T Consensus 73 -~~~~~~l~~a~~~~~~~~l~~ll~~l~~-------~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~ 144 (448)
T PLN02562 73 -PRDFFSIENSMENTMPPQLERLLHKLDE-------DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAI 144 (448)
T ss_pred -cccHHHHHHHHHHhchHHHHHHHHHhcC-------CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHH
Confidence 1111111111 12222222221110 0134899999999999999999999999999875432111
Q ss_pred --------CCCC---c--ccC-CCccchhhHHHHHHHHHHHH--HHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeee
Q 008369 268 --------FPHP---L--SRV-KQPVAYRLSYQIVDALIWLG--IRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYI 331 (568)
Q Consensus 268 --------~p~p---~--~~~-~~~~~~~~~~~~~~~~~~~~--~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~ 331 (568)
++.. . ..+ ..|.-..+...-...++... -......+.+......... ...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~vlv 211 (448)
T PLN02562 145 PELVRTGLISETGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLR-------------WILM 211 (448)
T ss_pred HHHhhccccccccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCC-------------EEEE
Confidence 0000 0 000 00000000000000000000 0000111111000000000 0111
Q ss_pred cC-CCCCC---------CCCCCCCCceEecceeccCCC----C--CCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHH
Q 008369 332 WS-PHLVP---------KPKDWGPKIDVVGFCFLDLAS----T--YEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKM 393 (568)
Q Consensus 332 ~s-p~l~p---------~p~~~~~~v~~vGpl~~~~~~----~--~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l 393 (568)
++ .++.+ .+++..+++..|||+...... . ++.+.++.+||+++++ +|||+|||+....+.+.
T Consensus 212 NTf~eLE~~~~~~~~~~~~~~~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~ 291 (448)
T PLN02562 212 NSFKDEEYDDVKNHQASYNNGQNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESN 291 (448)
T ss_pred cChhhhCHHHHHHHHhhhccccCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHH
Confidence 11 11111 123344689999999764321 1 1223457799998864 89999999864445556
Q ss_pred HHHHHHHHHHcCceEEEEcCCCCCCCC-----CCCCceEEEcCCCChhhhhcc--ccEEEEeCChhHHHHHHHhCCCEEe
Q 008369 394 TEIIVKALEITGHRGIINKGWGGLGNL-----AESKDFVYLLDNCPHDWLFSR--CLAVVHHGGAGTTAAGLKAACPTTI 466 (568)
Q Consensus 394 ~~~i~~al~~~~~~~Iv~~g~~~~~~l-----~~~~~nv~~~~~vP~~~ll~~--~~~~I~HGG~gT~~EaL~~GvP~vi 466 (568)
.+.++.+|+.++++|||+......+.+ +..++|+++++|+||.++|++ +.+|||||||||++||+++|||+|+
T Consensus 292 ~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~ 371 (448)
T PLN02562 292 VRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLC 371 (448)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEe
Confidence 666799999999999987532111112 225689999999999999955 7799999999999999999999999
Q ss_pred ecCCCChhHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHhC
Q 008369 467 VPFFGDQPFWGERVHA-RGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENE---DGVTGAVKAFYKHF 540 (568)
Q Consensus 467 vP~~~DQ~~na~~v~~-~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~---~g~~~av~~i~~~l 540 (568)
+|+++||+.||+++++ +|+|+ .+ ++++.++|+++|+++| |++||+||+++++++..+ +...+.++.|.+.+
T Consensus 372 ~P~~~DQ~~na~~~~~~~g~g~-~~--~~~~~~~l~~~v~~~l~~~~~r~~a~~l~~~~~~~~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 372 YPVAGDQFVNCAYIVDVWKIGV-RI--SGFGQKEVEEGLRKVMEDSGMGERLMKLRERAMGEEARLRSMMNFTTLKDEL 447 (448)
T ss_pred CCcccchHHHHHHHHHHhCcee-Ee--CCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999975 69887 45 4689999999999999 999999999999988764 23467777776654
No 7
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=6.3e-42 Score=364.07 Aligned_cols=390 Identities=17% Similarity=0.240 Sum_probs=242.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCC-----ceeeccCCChHHHHHHHhhcCCCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAG-----LEFFPLGGDPKILAGYMVKNKGFLPS 195 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~G-----l~f~~i~~~~~~l~~~~~~~~~~~~~ 195 (568)
+++||+++|+++.||++|++.||+.|+++||+|||+|++.+...++..+ +.+..++..+. .|+ |.
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~---------dgL-p~ 72 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPV---------NGL-PA 72 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCc---------cCC-CC
Confidence 4689999999999999999999999999999999999888777665543 33443322110 121 21
Q ss_pred CCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCC-----
Q 008369 196 GPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPH----- 270 (568)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~----- 270 (568)
+..........+...+....+.+.+.+.+.++..++|+||+| +..|+..+|+.+|||++.+++++....+.+..
T Consensus 73 g~~~~~~l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~~~~~~~~~~ 151 (442)
T PLN02208 73 GAETTSDIPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIAHTHVPGGKL 151 (442)
T ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHHHHccCcccc
Confidence 111000000111111111111111111112223478999999 57788999999999999999876432111100
Q ss_pred --CcccCCCccchhhHHHHHHHH--HHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC-CCCCC-----CC
Q 008369 271 --PLSRVKQPVAYRLSYQIVDAL--IWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS-PHLVP-----KP 340 (568)
Q Consensus 271 --p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s-p~l~p-----~p 340 (568)
+....+... ..+...-...+ ....+..+.+.+.+ .+ .... ...+++ .++.+ ..
T Consensus 152 ~~~~pglp~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-------------~vl~Ntf~eLE~~~~~~~~ 214 (442)
T PLN02208 152 GVPPPGYPSSK-VLFRENDAHALATLSIFYKRLYHQITT-GL--KSCD-------------VIALRTCKEIEGKFCDYIS 214 (442)
T ss_pred CCCCCCCCCcc-cccCHHHcCcccccchHHHHHHHHHHh-hh--ccCC-------------EEEEECHHHHHHHHHHHHH
Confidence 000111000 00000000000 00001111111111 00 0000 011111 01110 12
Q ss_pred CCCCCCceEecceeccCCCCCCCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCC-CC
Q 008369 341 KDWGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWG-GL 417 (568)
Q Consensus 341 ~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~-~~ 417 (568)
+.+++++..|||+..........++++.+||++++ .+|||||||+.....+++.++ +.+++..+.+++|+..+. +.
T Consensus 215 ~~~~~~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~-~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 215 RQYHKKVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQEL-CLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred hhcCCCEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHH-HHHHHhCCCcEEEEEeCCCcc
Confidence 23457899999997643211234678999999875 499999999987777888887 555555566665543332 11
Q ss_pred -CCCCCCC---------ceEEEcCCCChhhhh--ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-cC
Q 008369 418 -GNLAESK---------DFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHA-RG 484 (568)
Q Consensus 418 -~~l~~~~---------~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~-~G 484 (568)
.....+| .|+.+.+|+||.++| +++.+|||||||||++||+++|||+|++|+++||+.||+++++ +|
T Consensus 294 ~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g 373 (442)
T PLN02208 294 STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFE 373 (442)
T ss_pred cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhc
Confidence 1111233 578888999999998 6778999999999999999999999999999999999998765 99
Q ss_pred CCCCCCCCCC---CCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 485 LGPAPIPVEE---FSLDKLVDAIRFML-DP-----KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 485 ~G~~~i~~~~---lt~e~L~~aI~~lL-d~-----~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+|+ .+..++ ++.++|+++|++++ ++ ++|++|+++++++.+.++..+.++.|.+.+
T Consensus 374 ~gv-~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~~gsS~~~l~~~v~~l 437 (442)
T PLN02208 374 VSV-EVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVSPGLLTGYVDKFVEEL 437 (442)
T ss_pred eeE-EeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 998 676544 89999999999999 54 399999999999877655666777666654
No 8
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.8e-42 Score=369.11 Aligned_cols=387 Identities=16% Similarity=0.218 Sum_probs=247.8
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcC----CceeeccCC-ChHHHHHHHhhcCC
Q 008369 119 GIPPLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGA----GLEFFPLGG-DPKILAGYMVKNKG 191 (568)
Q Consensus 119 ~~~~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~----Gl~f~~i~~-~~~~l~~~~~~~~~ 191 (568)
...+.||++++++++||++|++.||++|+++ ||+|||++++.+...++.. |+.|+.++. .|..
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~---------- 76 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSE---------- 76 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCc----------
Confidence 3466899999999999999999999999999 9999999999888777774 899999874 1211
Q ss_pred CCCCCCCChhHHHH----HHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCC
Q 008369 192 FLPSGPSEIPIQRN----QLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSE 267 (568)
Q Consensus 192 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~ 267 (568)
. ... .+...... .+...++.++..+. .++|+||+|.+..|+..+|+++|||++.+++++....+.
T Consensus 77 ~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~ 145 (459)
T PLN02448 77 L-VRA-ADFPGFLEAVMTKMEAPFEQLLDRLE---------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSV 145 (459)
T ss_pred c-ccc-cCHHHHHHHHHHHhHHHHHHHHHhcC---------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHH
Confidence 0 000 11111111 12222222222211 257999999999999999999999999999987532111
Q ss_pred C------------CCCccc-----C-CCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCee
Q 008369 268 F------------PHPLSR-----V-KQPVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYA 329 (568)
Q Consensus 268 ~------------p~p~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~ 329 (568)
+ |..... . ..|.-..+...-...+.+.......+.+....-.... ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~-------------~~~v 212 (459)
T PLN02448 146 FYHFDLLPQNGHFPVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPK-------------AQYL 212 (459)
T ss_pred HHHhhhhhhccCCCCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhccc-------------CCEE
Confidence 1 111000 0 0000000100000000100000111111110000000 0001
Q ss_pred eecC-CCCCCC-----CCCCCCCceEecceeccCCC-------CCC-CChhhHHhhhcCC--CcEEEeCCCCCCCChHHH
Q 008369 330 YIWS-PHLVPK-----PKDWGPKIDVVGFCFLDLAS-------TYE-PPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKM 393 (568)
Q Consensus 330 ~~~s-p~l~p~-----p~~~~~~v~~vGpl~~~~~~-------~~~-~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l 393 (568)
..++ .++.+. ...++.++..+||+...... .+. .+.++..||+.++ ++|||+|||......++
T Consensus 213 lvNTf~eLE~~~~~~l~~~~~~~~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~- 291 (459)
T PLN02448 213 LFTSFYELEAQAIDALKSKFPFPVYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQ- 291 (459)
T ss_pred EEccHHHhhHHHHHHHHhhcCCceEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHH-
Confidence 1111 111111 11233468889998642110 011 1247899999864 49999999997766665
Q ss_pred HHHHHHHHHHcCceEEEEcCCCCCCCCCC-CCceEEEcCCCChhhhhc--cccEEEEeCChhHHHHHHHhCCCEEeecCC
Q 008369 394 TEIIVKALEITGHRGIINKGWGGLGNLAE-SKDFVYLLDNCPHDWLFS--RCLAVVHHGGAGTTAAGLKAACPTTIVPFF 470 (568)
Q Consensus 394 ~~~i~~al~~~~~~~Iv~~g~~~~~~l~~-~~~nv~~~~~vP~~~ll~--~~~~~I~HGG~gT~~EaL~~GvP~vivP~~ 470 (568)
.+.++++|+..+++|||+.... ...+.+ .++|+++++|+||.++|+ ++++|||||||||++||+++|||+|++|++
T Consensus 292 ~~~~~~~l~~~~~~~lw~~~~~-~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~ 370 (459)
T PLN02448 292 MDEIAAGLRDSGVRFLWVARGE-ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLF 370 (459)
T ss_pred HHHHHHHHHhCCCCEEEEEcCc-hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecccc
Confidence 5555999999999999864322 112222 346899999999999994 466799999999999999999999999999
Q ss_pred CChhHHHHHHHH-cCCCCCCCCC-----CCCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhc---CCc-HHHHHH
Q 008369 471 GDQPFWGERVHA-RGLGPAPIPV-----EEFSLDKLVDAIRFML-DP-----KVKEHAVELAKAMEN---EDG-VTGAVK 534 (568)
Q Consensus 471 ~DQ~~na~~v~~-~G~G~~~i~~-----~~lt~e~L~~aI~~lL-d~-----~~r~~a~~la~~~~~---~~g-~~~av~ 534 (568)
+||+.||+++++ +|+|+ .+.. ..+++++|+++|+++| ++ ++|++|++++++++. ++| ..+..+
T Consensus 371 ~DQ~~na~~v~~~~g~G~-~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~ 449 (459)
T PLN02448 371 WDQPLNSKLIVEDWKIGW-RVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLD 449 (459)
T ss_pred ccchhhHHHHHHHhCceE-EEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999977 68887 5532 2579999999999999 63 799999999887664 455 477777
Q ss_pred HHHHhCCC
Q 008369 535 AFYKHFPG 542 (568)
Q Consensus 535 ~i~~~l~~ 542 (568)
.|.+.+..
T Consensus 450 ~~v~~~~~ 457 (459)
T PLN02448 450 AFIRDISQ 457 (459)
T ss_pred HHHHHHhc
Confidence 77776653
No 9
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2.5e-45 Score=401.58 Aligned_cols=410 Identities=20% Similarity=0.234 Sum_probs=223.0
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhh--HhcCCceeecc--CCChHHHHHHHhhc-CCCCCCCCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDF--VLGAGLEFFPL--GGDPKILAGYMVKN-KGFLPSGPS 198 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~--v~~~Gl~f~~i--~~~~~~l~~~~~~~-~~~~~~~~~ 198 (568)
||++.|. +.+|+.++.+|+++|++|||+||++++...... .....+.+..+ +....+......+. ...+.....
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 6777774 779999999999999999999999987542211 12333444333 22111111100000 000000000
Q ss_pred --ChhHHHHHHHHHHHHHhhhcCCC-----CCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEecc-C--CC-----
Q 008369 199 --EIPIQRNQLKEIIYSLLPACKDP-----DPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTM-P--WT----- 263 (568)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~-p--~~----- 263 (568)
...........+.......|... +.+.++..++|++|+|.+..|+..+|+.+|||.+.+.+. + +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~~~~~ 160 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLSSFSG 160 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCTCCTS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccchhhhhcc
Confidence 00011112222233334556332 222344557999999998888999999999999765422 1 11
Q ss_pred ----CCCCCCCCcccCCCccch--hhHHHHHHHH---HHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCC
Q 008369 264 ----PTSEFPHPLSRVKQPVAY--RLSYQIVDAL---IWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSP 334 (568)
Q Consensus 264 ----~~~~~p~p~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp 334 (568)
++++.|+........+++ |+.+.+.... ....+....+.+.++..+ .+..... ...+....++++.
T Consensus 161 g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~l~l~ns~ 235 (500)
T PF00201_consen 161 GVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFG-FPFSFRE----LLSNASLVLINSH 235 (500)
T ss_dssp CCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS--GGGCHH----HHHHHHHCCSSTE
T ss_pred CCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcc-cccccHH----HHHHHHHHhhhcc
Confidence 122333333333333332 2222221111 111111001122211111 1110000 0011222334454
Q ss_pred CCCCCCCCCCCCceEecceeccCCCCCCCChhhHHhhhc--CCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEc
Q 008369 335 HLVPKPKDWGPKIDVVGFCFLDLASTYEPPDSLVKWLED--GEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINK 412 (568)
Q Consensus 335 ~l~p~p~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~--~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~ 412 (568)
..+..|++.+|++.++|++..+.. .+.+.++..|+++ .+++|||||||+....+++..+.+++++++.++++||..
T Consensus 236 ~~ld~prp~~p~v~~vGgl~~~~~--~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~ 313 (500)
T PF00201_consen 236 PSLDFPRPLLPNVVEVGGLHIKPA--KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKY 313 (500)
T ss_dssp EE----HHHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEE
T ss_pred ccCcCCcchhhcccccCccccccc--cccccccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHhhCCCcccccc
Confidence 455678888899999999876543 3567889999987 346999999999877888888888999999999998865
Q ss_pred CCCCCCCCCCCCceEEEcCCCChhhhh--ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCC
Q 008369 413 GWGGLGNLAESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPI 490 (568)
Q Consensus 413 g~~~~~~l~~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i 490 (568)
... ....+++|+++.+|+||.+|| +++++||||||+||+.||+++|||+|++|+|+||+.||+++++.|+|+ .+
T Consensus 314 ~~~---~~~~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~-~l 389 (500)
T PF00201_consen 314 EGE---PPENLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGV-VL 389 (500)
T ss_dssp TCS---HGCHHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEE-EE
T ss_pred ccc---ccccccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEE-EE
Confidence 432 123457899999999999998 889999999999999999999999999999999999999999999999 89
Q ss_pred CCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHhCCCCCC
Q 008369 491 PVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENE--DGVTGAVKAFYKHFPGKKS 545 (568)
Q Consensus 491 ~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~--~g~~~av~~i~~~l~~~~~ 545 (568)
+..++|.++|.+||+++| |++|+++|+++++.+++. .+.++|+.++|-.++....
T Consensus 390 ~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~~ 447 (500)
T PF00201_consen 390 DKNDLTEEELRAAIREVLENPSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGGA 447 (500)
T ss_dssp GGGC-SHHHHHHHHHHHHHSHHHHHHHHHHHHTTT-----------------------
T ss_pred EecCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999 999999999999999975 5669999999988876544
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.3e-41 Score=358.53 Aligned_cols=382 Identities=18% Similarity=0.276 Sum_probs=238.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHH--HHhCCCeEEEEeCCCchhhHhcCC-----ceeeccCCChHHHHHHHhhcCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKR--LQEDGHRVRLATHANFKDFVLGAG-----LEFFPLGGDPKILAGYMVKNKGFL 193 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~--L~~rGH~V~~~t~~~~~~~v~~~G-----l~f~~i~~~~~~l~~~~~~~~~~~ 193 (568)
.+.||+++|++++||++|++.||++ |+++|++|||++++.+.+.++..+ +.+..++. |+.
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~-------------glp 73 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSD-------------GLP 73 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCC-------------CCC
Confidence 4579999999999999999999999 569999999999988776655432 33333221 111
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCC---
Q 008369 194 PSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPH--- 270 (568)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~--- 270 (568)
+............+.+.....+.. .++..+||+||+|.+..|+..+|+.+|||.+.+++.+++....+.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~ 146 (456)
T PLN02210 74 KDDPRAPETLLKSLNKVGAKNLSK-------IIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYM 146 (456)
T ss_pred CCcccCHHHHHHHHHHhhhHHHHH-------HHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhh
Confidence 111111111111111111111111 1112268999999999999999999999999998776542111110
Q ss_pred ---Cccc-------CCCccchhhHHHHHHHHHHHH----HHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC---
Q 008369 271 ---PLSR-------VKQPVAYRLSYQIVDALIWLG----IRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS--- 333 (568)
Q Consensus 271 ---p~~~-------~~~~~~~~~~~~~~~~~~~~~----~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s--- 333 (568)
+... ...|.-..+...-....++.. +......+.+ .. .. ....++++
T Consensus 147 ~~~~~~~~~~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~-~~--~~-------------~~~vlvNTf~e 210 (456)
T PLN02210 147 KTNSFPDLEDLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFAD-CL--RY-------------VKWVLVNSFYE 210 (456)
T ss_pred ccCCCCcccccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHH-hc--cc-------------CCEEEEeCHHH
Confidence 0000 000100000100000000000 0011111111 00 00 00111111
Q ss_pred --CCCCCCCCCCCCCceEecceecc----CCC----------CCCCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHH
Q 008369 334 --PHLVPKPKDWGPKIDVVGFCFLD----LAS----------TYEPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTE 395 (568)
Q Consensus 334 --p~l~p~p~~~~~~v~~vGpl~~~----~~~----------~~~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~ 395 (568)
+..+..-++. +++..|||+... ... .+..+.++.+||++++ ++|||+|||......+++.
T Consensus 211 LE~~~~~~l~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~- 288 (456)
T PLN02210 211 LESEIIESMADL-KPVIPIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVE- 288 (456)
T ss_pred HhHHHHHHHhhc-CCEEEEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHH-
Confidence 0000000111 368999998631 100 0233456899999864 5999999999876655554
Q ss_pred HHHHHHHHcCceEEEEcCCCC----CCCCCC-C-CceEEEcCCCChhhhhcccc--EEEEeCChhHHHHHHHhCCCEEee
Q 008369 396 IIVKALEITGHRGIINKGWGG----LGNLAE-S-KDFVYLLDNCPHDWLFSRCL--AVVHHGGAGTTAAGLKAACPTTIV 467 (568)
Q Consensus 396 ~i~~al~~~~~~~Iv~~g~~~----~~~l~~-~-~~nv~~~~~vP~~~ll~~~~--~~I~HGG~gT~~EaL~~GvP~viv 467 (568)
.++.+|+.++++|||+.+... ...+++ . +++..+++|+||.++|++++ +|||||||||++|++++|||+|++
T Consensus 289 e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~ 368 (456)
T PLN02210 289 TIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAY 368 (456)
T ss_pred HHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEec
Confidence 459999999999999765321 111111 1 36677889999999997765 999999999999999999999999
Q ss_pred cCCCChhHHHHHHHH-cCCCCCCCCC----CCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhc---CCc-HHHHHH
Q 008369 468 PFFGDQPFWGERVHA-RGLGPAPIPV----EEFSLDKLVDAIRFML-DP---KVKEHAVELAKAMEN---EDG-VTGAVK 534 (568)
Q Consensus 468 P~~~DQ~~na~~v~~-~G~G~~~i~~----~~lt~e~L~~aI~~lL-d~---~~r~~a~~la~~~~~---~~g-~~~av~ 534 (568)
|+++||+.||+++++ +|+|+ .+.. ..++.++|+++|+++| ++ ++|+||+++++..++ ++| ..+..+
T Consensus 369 P~~~DQ~~na~~~~~~~g~G~-~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~ 447 (456)
T PLN02210 369 PSWTDQPIDARLLVDVFGIGV-RMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLD 447 (456)
T ss_pred ccccccHHHHHHHHHHhCeEE-EEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999999987 99998 6653 2589999999999999 65 499999999876654 566 467777
Q ss_pred HHHHhCC
Q 008369 535 AFYKHFP 541 (568)
Q Consensus 535 ~i~~~l~ 541 (568)
.|.+.+.
T Consensus 448 ~~v~~~~ 454 (456)
T PLN02210 448 LFISDIT 454 (456)
T ss_pred HHHHHHh
Confidence 7766553
No 11
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.7e-41 Score=360.15 Aligned_cols=385 Identities=15% Similarity=0.197 Sum_probs=243.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch-hhHh-cCCceeeccCCChHHHHHHHhhcCCCCCCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK-DFVL-GAGLEFFPLGGDPKILAGYMVKNKGFLPSGPS 198 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~-~~v~-~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~ 198 (568)
++.||+++|++++||++|++.||+.|+.+|+.|||++++... .... ..++.|..++. |+.+....
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~-------------glp~~~~~ 72 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPE-------------SLPESDFK 72 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCC-------------CCCccccc
Confidence 567999999999999999999999999999999999876432 1111 12577777652 11110000
Q ss_pred --ChhHHHH----HHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCC----
Q 008369 199 --EIPIQRN----QLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEF---- 268 (568)
Q Consensus 199 --~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~---- 268 (568)
....... .+..-++.++..... . ..-++++||+|.+..|+..+|+.+|||.+.+++++....+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~---~--~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~ 147 (451)
T PLN02410 73 NLGPIEFLHKLNKECQVSFKDCLGQLVL---Q--QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFD 147 (451)
T ss_pred ccCHHHHHHHHHHHhHHHHHHHHHHHHh---c--cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHH
Confidence 0001111 111112222221110 0 012579999999999999999999999999998774321110
Q ss_pred ---------CCCcc--c--CCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC-C
Q 008369 269 ---------PHPLS--R--VKQPVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS-P 334 (568)
Q Consensus 269 ---------p~p~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s-p 334 (568)
|.... . ...|.-..+...-.....+.........++. ....... + ...+++ .
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~-~~~~~~~-----------~--~vlvNTf~ 213 (451)
T PLN02410 148 KLYANNVLAPLKEPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRN-TVDKRTA-----------S--SVIINTAS 213 (451)
T ss_pred HHHhccCCCCccccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHH-HhhcccC-----------C--EEEEeChH
Confidence 10000 0 0000000000000000000000011111111 0000000 0 011111 1
Q ss_pred CCCC----C-CCCCCCCceEecceeccCC--CC-CCCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHHHHHHHHHHc
Q 008369 335 HLVP----K-PKDWGPKIDVVGFCFLDLA--ST-YEPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTEIIVKALEIT 404 (568)
Q Consensus 335 ~l~p----~-p~~~~~~v~~vGpl~~~~~--~~-~~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~~i~~al~~~ 404 (568)
++.+ . ....++++..|||+..... .. .....++.+||++++ .+|||||||......+++.++ +.+|+.+
T Consensus 214 eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~el-a~gLe~s 292 (451)
T PLN02410 214 CLESSSLSRLQQQLQIPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMET-ASGLDSS 292 (451)
T ss_pred HhhHHHHHHHHhccCCCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHH-HHHHHhc
Confidence 1111 0 1123457899999975321 11 122345789999875 399999999998888888885 9999999
Q ss_pred CceEEEEcCCCC---CC---CC-----CCCCceEEEcCCCChhhhhcc--ccEEEEeCChhHHHHHHHhCCCEEeecCCC
Q 008369 405 GHRGIINKGWGG---LG---NL-----AESKDFVYLLDNCPHDWLFSR--CLAVVHHGGAGTTAAGLKAACPTTIVPFFG 471 (568)
Q Consensus 405 ~~~~Iv~~g~~~---~~---~l-----~~~~~nv~~~~~vP~~~ll~~--~~~~I~HGG~gT~~EaL~~GvP~vivP~~~ 471 (568)
+.+|+|+..... .+ .+ +..++|+++++|+||.++|++ +++|||||||||++||+++|||+|++|+++
T Consensus 293 ~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~ 372 (451)
T PLN02410 293 NQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSS 372 (451)
T ss_pred CCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccc
Confidence 999999764221 00 11 235688999999999999955 888999999999999999999999999999
Q ss_pred ChhHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHHHHhc-CH---HHHHHHHHHHHHhhc---CCc-HHHHHHHHHHhC
Q 008369 472 DQPFWGERVHAR-GLGPAPIPVEEFSLDKLVDAIRFML-DP---KVKEHAVELAKAMEN---EDG-VTGAVKAFYKHF 540 (568)
Q Consensus 472 DQ~~na~~v~~~-G~G~~~i~~~~lt~e~L~~aI~~lL-d~---~~r~~a~~la~~~~~---~~g-~~~av~~i~~~l 540 (568)
||+.||+++++. |+|+ .+. ..++.++|+++|+++| ++ ++|++|+++++++++ ++| ..+.++.|.+.+
T Consensus 373 DQ~~na~~~~~~~~~G~-~~~-~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~ 448 (451)
T PLN02410 373 DQKVNARYLECVWKIGI-QVE-GDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFM 448 (451)
T ss_pred cCHHHHHHHHHHhCeeE-EeC-CcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 999999999754 9998 665 6889999999999999 64 799999999988875 555 466666666554
No 12
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-40 Score=357.56 Aligned_cols=390 Identities=19% Similarity=0.191 Sum_probs=243.6
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC-----CceeeccCCChHHHHHHHhhcCCCCC
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA-----GLEFFPLGGDPKILAGYMVKNKGFLP 194 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~-----Gl~f~~i~~~~~~l~~~~~~~~~~~~ 194 (568)
..++||+++|++++||++||+.||+.|+.+|+.|||++++.....++.. ++.+..++. |.. .+ +|
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~-P~~--------~~-lP 76 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPF-PSH--------PS-IP 76 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCC-CCc--------CC-CC
Confidence 4568999999999999999999999999999999999987765554432 355555442 100 01 11
Q ss_pred CCCC---Chh-----HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCC
Q 008369 195 SGPS---EIP-----IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTS 266 (568)
Q Consensus 195 ~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~ 266 (568)
.+.. .+. ............+.+.+.+. ..+|++||+|.+..|+..+|+.+|||++.+++++....+
T Consensus 77 dG~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~------~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~ 150 (477)
T PLN02863 77 SGVENVKDLPPSGFPLMIHALGELYAPLLSWFRSH------PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALS 150 (477)
T ss_pred CCCcChhhcchhhHHHHHHHHHHhHHHHHHHHHhC------CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHH
Confidence 1110 110 01111111111121111111 125799999999999999999999999999988754322
Q ss_pred CC-------CCCc---c--------cCCCccchhhH---HHHHHHHHHH-HHHHHHHHHHHhhcCCCCcccccCCCCCCC
Q 008369 267 EF-------PHPL---S--------RVKQPVAYRLS---YQIVDALIWL-GIRDMINDFRKKRLNLRRVTYLSGSYSSPL 324 (568)
Q Consensus 267 ~~-------p~p~---~--------~~~~~~~~~~~---~~~~~~~~~~-~~~~~in~~r~~~l~l~~~~~~~~~~~~~~ 324 (568)
.+ |+.. . .++.-...+.. ..+....... ....+.+.++. . ...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~-~---~~~----------- 215 (477)
T PLN02863 151 IMYSLWREMPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRA-N---IAS----------- 215 (477)
T ss_pred HHHHHhhcccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhh-h---ccC-----------
Confidence 11 1100 0 01100000000 0000000000 00011111111 0 000
Q ss_pred CCCeeeecC-CCCC----C-CCCCCC-CCceEecceeccCC-C---------CCCCChhhHHhhhcCC--CcEEEeCCCC
Q 008369 325 DVPYAYIWS-PHLV----P-KPKDWG-PKIDVVGFCFLDLA-S---------TYEPPDSLVKWLEDGE--KPIYIGFGSL 385 (568)
Q Consensus 325 ~~~~~~~~s-p~l~----p-~p~~~~-~~v~~vGpl~~~~~-~---------~~~~~~~l~~~L~~~~--p~VyVsfGS~ 385 (568)
+ ...+++ ..+. . ....++ +++..|||+..... . ....++++.+||+.++ ++|||+|||+
T Consensus 216 ~--~vlvNTf~eLE~~~~~~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~ 293 (477)
T PLN02863 216 W--GLVVNSFTELEGIYLEHLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQ 293 (477)
T ss_pred C--EEEEecHHHHHHHHHHHHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeece
Confidence 0 001111 0110 0 011233 46888999864221 0 0112357999999875 5999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCceEEEEcCCCCC--CCCCCC---------CceEEEcCCCChhhhhcc--ccEEEEeCChh
Q 008369 386 PVEEPEKMTEIIVKALEITGHRGIINKGWGGL--GNLAES---------KDFVYLLDNCPHDWLFSR--CLAVVHHGGAG 452 (568)
Q Consensus 386 ~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~--~~l~~~---------~~nv~~~~~vP~~~ll~~--~~~~I~HGG~g 452 (568)
.....+++.+ ++.+|+.++++|||+.+.... .....+ +.++++.+|+||.++|++ +++||||||||
T Consensus 294 ~~~~~~~~~e-la~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~n 372 (477)
T PLN02863 294 VVLTKEQMEA-LASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWN 372 (477)
T ss_pred ecCCHHHHHH-HHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCch
Confidence 8877777655 599999999999998763211 011112 235788899999999965 99999999999
Q ss_pred HHHHHHHhCCCEEeecCCCChhHHHHHH-HHcCCCCCCCCC---CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHHhhc-
Q 008369 453 TTAAGLKAACPTTIVPFFGDQPFWGERV-HARGLGPAPIPV---EEFSLDKLVDAIRFML--DPKVKEHAVELAKAMEN- 525 (568)
Q Consensus 453 T~~EaL~~GvP~vivP~~~DQ~~na~~v-~~~G~G~~~i~~---~~lt~e~L~~aI~~lL--d~~~r~~a~~la~~~~~- 525 (568)
|++||+++|||+|++|+++||+.||+++ +++|+|+ .+.. ...+.+++.++|++++ +++||+||++++++.++
T Consensus 373 S~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~-~~~~~~~~~~~~~~v~~~v~~~m~~~~~~r~~a~~l~e~a~~A 451 (477)
T PLN02863 373 SVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAV-RVCEGADTVPDSDELARVFMESVSENQVERERAKELRRAALDA 451 (477)
T ss_pred HHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeE-EeccCCCCCcCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 5689998 5632 2468999999999987 68999999999987543
Q ss_pred --CCc-HHHHHHHHHHhCCCCC
Q 008369 526 --EDG-VTGAVKAFYKHFPGKK 544 (568)
Q Consensus 526 --~~g-~~~av~~i~~~l~~~~ 544 (568)
++| ..+.++.|.+.+....
T Consensus 452 v~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 452 IKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred hccCCcHHHHHHHHHHHHHHhc
Confidence 344 5677777777665443
No 13
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=6.9e-41 Score=356.51 Aligned_cols=385 Identities=18% Similarity=0.195 Sum_probs=236.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC-----CceeeccCCChHHHHHHHhhcCCCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA-----GLEFFPLGGDPKILAGYMVKNKGFLPSG 196 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~-----Gl~f~~i~~~~~~l~~~~~~~~~~~~~~ 196 (568)
+.||+++|++++||++|++.||+.|+++|++|||++++.+...++.. ++.|..++... ..|+ |.+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~---------~dGL-P~g 73 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPP---------VDGL-PFG 73 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCC---------cCCC-CCc
Confidence 47999999999999999999999999999999999988776666432 35554332100 0111 111
Q ss_pred CC---Chh-HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCc
Q 008369 197 PS---EIP-IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPL 272 (568)
Q Consensus 197 ~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~ 272 (568)
.. ++. .....+......+..... +.++...||+||+|. ..|+..+|+.+|||++.+++++....+.+.++.
T Consensus 74 ~e~~~~l~~~~~~~~~~a~~~l~~~l~----~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~ 148 (446)
T PLN00414 74 AETASDLPNSTKKPIFDAMDLLRDQIE----AKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR 148 (446)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHH----HHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH
Confidence 00 010 000011111111111111 111223689999995 789999999999999999987643221111110
Q ss_pred -------ccCCCcc-chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC-CCC----CC-
Q 008369 273 -------SRVKQPV-AYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS-PHL----VP- 338 (568)
Q Consensus 273 -------~~~~~~~-~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s-p~l----~p- 338 (568)
..++... ..+....-...+.......+...++. + .... ...+++ .++ +.
T Consensus 149 ~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~-------------~vlvNTf~eLE~~~~~~ 211 (446)
T PLN00414 149 AELGFPPPDYPLSKVALRGHDANVCSLFANSHELFGLITKG--L--KNCD-------------VVSIRTCVELEGNLCDF 211 (446)
T ss_pred hhcCCCCCCCCCCcCcCchhhcccchhhcccHHHHHHHHHh--h--ccCC-------------EEEEechHHHHHHHHHH
Confidence 0011000 00000000000000000000001110 0 0000 011111 011 00
Q ss_pred CCCCCCCCceEecceeccCCC--CCCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCC
Q 008369 339 KPKDWGPKIDVVGFCFLDLAS--TYEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGW 414 (568)
Q Consensus 339 ~p~~~~~~v~~vGpl~~~~~~--~~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~ 414 (568)
....+++++..|||+...... ......++.+||+++++ +|||||||......+++.++ +.+|+..+.+|+|+...
T Consensus 212 ~~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~-a~gL~~s~~~Flwvvr~ 290 (446)
T PLN00414 212 IERQCQRKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEF-CLGMELTGLPFLIAVMP 290 (446)
T ss_pred HHHhcCCCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHH-HHHHHHcCCCeEEEEec
Confidence 011233568899999643211 11113468899998875 99999999998888999987 88899999999887632
Q ss_pred C----CC-CCC-----CCCCc-eEEEcCCCChhhhhcc--ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHH
Q 008369 415 G----GL-GNL-----AESKD-FVYLLDNCPHDWLFSR--CLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVH 481 (568)
Q Consensus 415 ~----~~-~~l-----~~~~~-nv~~~~~vP~~~ll~~--~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~ 481 (568)
. +. +.+ +...+ +..+.+|+||.++|++ +++|||||||||++||+++|||+|++|+++||+.||++++
T Consensus 291 ~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~ 370 (446)
T PLN00414 291 PKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLT 370 (446)
T ss_pred CCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHH
Confidence 1 10 111 11222 3445599999999955 5889999999999999999999999999999999999995
Q ss_pred -HcCCCCCCCCCC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 482 -ARGLGPAPIPVE---EFSLDKLVDAIRFML-DP-----KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 482 -~~G~G~~~i~~~---~lt~e~L~~aI~~lL-d~-----~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
.+|+|+ .+..+ .++.++|+++++++| ++ ++|++|+++++.+.+++|....++.|.+.+
T Consensus 371 ~~~g~g~-~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~ss~l~~~v~~~ 438 (446)
T PLN00414 371 EELEVSV-KVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLLSGYADKFVEAL 438 (446)
T ss_pred HHhCeEE-EeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 799998 67532 489999999999999 63 389999999999988888333344444443
No 14
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.1e-39 Score=352.59 Aligned_cols=389 Identities=17% Similarity=0.165 Sum_probs=237.8
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCcee-------------eccCCChHHHHHHH
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEF-------------FPLGGDPKILAGYM 186 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f-------------~~i~~~~~~l~~~~ 186 (568)
.+++||++++++++||++|++.||+.|+++||+|||++++.+...++..+-.| ++++...
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~------- 75 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVE------- 75 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCc-------
Confidence 35689999999999999999999999999999999999988877666544332 2222100
Q ss_pred hhcCCCCCCCCC-----------ChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEE
Q 008369 187 VKNKGFLPSGPS-----------EIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLH 255 (568)
Q Consensus 187 ~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v 255 (568)
.+ +|.+.. ........+......+... +.+.++..+||+||+|.+..|+..+|+.+|||.+
T Consensus 76 ---~g-lP~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v 147 (482)
T PLN03007 76 ---LG-LPEGCENVDFITSNNNDDSGDLFLKFLFSTKYFKDQ----LEKLLETTRPDCLVADMFFPWATEAAEKFGVPRL 147 (482)
T ss_pred ---CC-CCCCcccccccccccccchHHHHHHHHHHHHHHHHH----HHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeE
Confidence 01 111100 0000011111111111111 1111223368999999999999999999999999
Q ss_pred EEeccCCCCCC-----CCCCCccc---------CCC-ccchhhHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCcccccCC
Q 008369 256 IIFTMPWTPTS-----EFPHPLSR---------VKQ-PVAYRLSYQIVDAL-IWLGIRDMINDFRKKRLNLRRVTYLSGS 319 (568)
Q Consensus 256 ~~~t~p~~~~~-----~~p~p~~~---------~~~-~~~~~~~~~~~~~~-~~~~~~~~in~~r~~~l~l~~~~~~~~~ 319 (568)
.+++++.+..+ .++.+... .+. +....+........ -...+...+...+.. +.
T Consensus 148 ~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------- 216 (482)
T PLN03007 148 VFHGTGYFSLCASYCIRVHKPQKKVASSSEPFVIPDLPGDIVITEEQINDADEESPMGKFMKEVRES---EV-------- 216 (482)
T ss_pred EeecccHHHHHHHHHHHhcccccccCCCCceeeCCCCCCccccCHHhcCCCCCchhHHHHHHHHHhh---cc--------
Confidence 99886642210 00111000 000 00000000000000 000001111111110 00
Q ss_pred CCCCCCCCeeeecC-----CCCCCCC-CCCCCCceEecceeccCCC----------CCCCChhhHHhhhcCCC--cEEEe
Q 008369 320 YSSPLDVPYAYIWS-----PHLVPKP-KDWGPKIDVVGFCFLDLAS----------TYEPPDSLVKWLEDGEK--PIYIG 381 (568)
Q Consensus 320 ~~~~~~~~~~~~~s-----p~l~p~p-~~~~~~v~~vGpl~~~~~~----------~~~~~~~l~~~L~~~~p--~VyVs 381 (568)
+.....+++ +...+.. ......+..|||+...... ....+.++.+||+++++ +||||
T Consensus 217 -----~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvs 291 (482)
T PLN03007 217 -----KSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLS 291 (482)
T ss_pred -----cCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEe
Confidence 000111111 1111111 1122468899997542110 01124678999998754 99999
Q ss_pred CCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCC-----CCCCCC------CCceEEEcCCCChhhhhcc--ccEEEEe
Q 008369 382 FGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGG-----LGNLAE------SKDFVYLLDNCPHDWLFSR--CLAVVHH 448 (568)
Q Consensus 382 fGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~-----~~~l~~------~~~nv~~~~~vP~~~ll~~--~~~~I~H 448 (568)
|||+.....+++.++ +.+|+.++++|||+.+... .+.+++ .+.|+++.+|+||.++|++ +++||||
T Consensus 292 fGS~~~~~~~~~~~~-~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH 370 (482)
T PLN03007 292 FGSVASFKNEQLFEI-AAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTH 370 (482)
T ss_pred ecCCcCCCHHHHHHH-HHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeec
Confidence 999987777777776 7999999999999765321 111221 2568899999999999966 4679999
Q ss_pred CChhHHHHHHHhCCCEEeecCCCChhHHHHHHH---HcCCCCCC-----CCCCCCCHHHHHHHHHHhc-CH---HHHHHH
Q 008369 449 GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVH---ARGLGPAP-----IPVEEFSLDKLVDAIRFML-DP---KVKEHA 516 (568)
Q Consensus 449 GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~---~~G~G~~~-----i~~~~lt~e~L~~aI~~lL-d~---~~r~~a 516 (568)
|||||++||+++|||+|++|+++||+.||++++ +.|+|+.. ++...++.++|+++|+++| ++ ++|++|
T Consensus 371 ~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a 450 (482)
T PLN03007 371 CGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRA 450 (482)
T ss_pred CcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999999999999999999999999999885 34554410 1345689999999999999 76 899999
Q ss_pred HHHHHHhhc---CCc-HHHHHHHHHHhC
Q 008369 517 VELAKAMEN---EDG-VTGAVKAFYKHF 540 (568)
Q Consensus 517 ~~la~~~~~---~~g-~~~av~~i~~~l 540 (568)
+++++.+++ ++| ..+..+.|.+.+
T Consensus 451 ~~~~~~a~~a~~~gGsS~~~l~~~v~~~ 478 (482)
T PLN03007 451 KKLAEMAKAAVEEGGSSFNDLNKFMEEL 478 (482)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999887765 455 466666666554
No 15
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.9e-40 Score=358.07 Aligned_cols=394 Identities=17% Similarity=0.223 Sum_probs=242.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCchh-h------Hh------cCCceeeccCCChHHHHHHH
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDG--HRVRLATHANFKD-F------VL------GAGLEFFPLGGDPKILAGYM 186 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rG--H~V~~~t~~~~~~-~------v~------~~Gl~f~~i~~~~~~l~~~~ 186 (568)
++||+++|++++||++|++.||+.|+.+| ..|||++++.... . +. ..++.|..++....
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~------ 75 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQ------ 75 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCC------
Confidence 58999999999999999999999999998 8899997764321 1 11 12477777753210
Q ss_pred hhcCCCCCCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCC-cEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCC
Q 008369 187 VKNKGFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKP-DAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPT 265 (568)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-DlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~ 265 (568)
+ +.....+......+...++..+......... ....| ++||+|.+..|+..+|+.+|||++.+++++....
T Consensus 76 ---~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~ 147 (481)
T PLN02554 76 ---P---TTEDPTFQSYIDNQKPKVRDAVAKLVDDSST--PSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFL 147 (481)
T ss_pred ---C---cccchHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHH
Confidence 0 0000011111112222222222221110000 01123 8999999999999999999999999998875421
Q ss_pred CCCCC----------C---ccc----CCCcc-chhhHHHHHHHHHH--HHHHHHHHHHHHhhcCCCCcccc-cCCC-CCC
Q 008369 266 SEFPH----------P---LSR----VKQPV-AYRLSYQIVDALIW--LGIRDMINDFRKKRLNLRRVTYL-SGSY-SSP 323 (568)
Q Consensus 266 ~~~p~----------p---~~~----~~~~~-~~~~~~~~~~~~~~--~~~~~~in~~r~~~l~l~~~~~~-~~~~-~~~ 323 (568)
+.+.| + ... +..|. ...+...-+....+ .........++. +.....+ .... ...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~~~~~~~~~~~~----~~~~~gvlvNt~~eLe 223 (481)
T PLN02554 148 GLQLHVQMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKEWLPLFLAQARR----FREMKGILVNTVAELE 223 (481)
T ss_pred HHHHhhhhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHHHHHHHHHHHHh----cccCCEEEEechHHHh
Confidence 11100 0 000 00000 00000000000000 001111111111 1000000 0000 000
Q ss_pred CCCCeeeecCCCCCCCCCCCCCCceEecceec-cCC-C--CCCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHHHH
Q 008369 324 LDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFL-DLA-S--TYEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTEII 397 (568)
Q Consensus 324 ~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~-~~~-~--~~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~~i 397 (568)
.+....+..+ . ...+++..|||+.. ... . ....++++.+||+++++ +|||||||+.....+++.+ +
T Consensus 224 ~~~~~~l~~~------~-~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~-l 295 (481)
T PLN02554 224 PQALKFFSGS------S-GDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQARE-I 295 (481)
T ss_pred HHHHHHHHhc------c-cCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHH-H
Confidence 0000000000 0 02256899999942 221 1 11244679999998754 8999999997767776555 4
Q ss_pred HHHHHHcCceEEEEcCCCC-------------C-CCCC-----CCCceEEEcCCCChhhhh--ccccEEEEeCChhHHHH
Q 008369 398 VKALEITGHRGIINKGWGG-------------L-GNLA-----ESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAA 456 (568)
Q Consensus 398 ~~al~~~~~~~Iv~~g~~~-------------~-~~l~-----~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~E 456 (568)
+.+|+.++++|||+..+.. . +.+. ..++|+++++|+||.++| +++++|||||||||++|
T Consensus 296 a~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~E 375 (481)
T PLN02554 296 AIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILE 375 (481)
T ss_pred HHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHH
Confidence 9999999999999865411 0 0011 145678889999999999 89999999999999999
Q ss_pred HHHhCCCEEeecCCCChhHHH-HHHHHcCCCCCCCCC-----------CCCCHHHHHHHHHHhc--CHHHHHHHHHHHHH
Q 008369 457 GLKAACPTTIVPFFGDQPFWG-ERVHARGLGPAPIPV-----------EEFSLDKLVDAIRFML--DPKVKEHAVELAKA 522 (568)
Q Consensus 457 aL~~GvP~vivP~~~DQ~~na-~~v~~~G~G~~~i~~-----------~~lt~e~L~~aI~~lL--d~~~r~~a~~la~~ 522 (568)
|+++|||+|++|+++||+.|| .+++++|+|+ .++. ..++.++|+++|+++| |++||++|++++++
T Consensus 376 a~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv-~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~ 454 (481)
T PLN02554 376 SLWFGVPMAAWPLYAEQKFNAFEMVEELGLAV-EIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEK 454 (481)
T ss_pred HHHcCCCEEecCccccchhhHHHHHHHhCceE-EeeccccccccccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999 4578999998 6642 3689999999999999 58999999999998
Q ss_pred hh---cCCcH-HHHHHHHHHhCCC
Q 008369 523 ME---NEDGV-TGAVKAFYKHFPG 542 (568)
Q Consensus 523 ~~---~~~g~-~~av~~i~~~l~~ 542 (568)
++ .++|. .++++.|.+.+..
T Consensus 455 ~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 455 CHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred HHHHhcCCChHHHHHHHHHHHHHh
Confidence 87 45664 6677777666543
No 16
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=2.5e-40 Score=350.34 Aligned_cols=386 Identities=19% Similarity=0.224 Sum_probs=239.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC-----C--ceeeccCCChHHHHHHHhhcCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA-----G--LEFFPLGGDPKILAGYMVKNKGFL 193 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~-----G--l~f~~i~~~~~~l~~~~~~~~~~~ 193 (568)
+++||+++|++++||++|++.||+.|+.+|+.|||++++.....+... + +.+.+++.. .|+
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~-----------~gl- 71 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHV-----------DGL- 71 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCc-----------CCC-
Confidence 568999999999999999999999999999999999987755444321 2 445555421 121
Q ss_pred CCCCC---Chh-HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCC-
Q 008369 194 PSGPS---EIP-IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEF- 268 (568)
Q Consensus 194 ~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~- 268 (568)
|.+.. .+. .....+......+ ...+.+.++..+||+||+|. ..|+..+|+.+|||.+.+++++....+.+
T Consensus 72 p~g~e~~~~~~~~~~~~~~~a~~~~----~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~ 146 (453)
T PLN02764 72 PVGTETVSEIPVTSADLLMSAMDLT----RDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASML 146 (453)
T ss_pred CCcccccccCChhHHHHHHHHHHHh----HHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHh
Confidence 11100 001 0000111111100 01111111112579999995 78999999999999999998765421111
Q ss_pred -CC-----CcccCCCcc-chhhHH--HHHH--H-HHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC-CC
Q 008369 269 -PH-----PLSRVKQPV-AYRLSY--QIVD--A-LIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS-PH 335 (568)
Q Consensus 269 -p~-----p~~~~~~~~-~~~~~~--~~~~--~-~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s-p~ 335 (568)
+. +....+... ..+... ...+ . ............+.+ .+.... ...+++ .+
T Consensus 147 ~~~~~~~~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~-------------~vlvNTf~e 210 (453)
T PLN02764 147 VPGGELGVPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTT---SLMNSD-------------VIAIRTARE 210 (453)
T ss_pred cccccCCCCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHH---hhccCC-------------EEEEeccHH
Confidence 10 000011000 000000 0000 0 000000111111111 000000 001111 01
Q ss_pred CCC----C-CCCCCCCceEecceeccCCCCCCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHHHHHHHHHHcCceE
Q 008369 336 LVP----K-PKDWGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTEIIVKALEITGHRG 408 (568)
Q Consensus 336 l~p----~-p~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~ 408 (568)
+.+ . ...+++++..|||+..........+.++.+||+++++ +|||||||+.....+++.++ +.+|+..+.+|
T Consensus 211 LE~~~~~~~~~~~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~el-a~gL~~s~~pf 289 (453)
T PLN02764 211 IEGNFCDYIEKHCRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQEL-CLGMELTGSPF 289 (453)
T ss_pred hhHHHHHHHHhhcCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHH-HHHHHhCCCCe
Confidence 100 0 0112357899999865321111124579999998765 99999999988888999887 89999999999
Q ss_pred EEEcCCC----C-CCCCC-----CC-CceEEEcCCCChhhhhc--cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhH
Q 008369 409 IINKGWG----G-LGNLA-----ES-KDFVYLLDNCPHDWLFS--RCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPF 475 (568)
Q Consensus 409 Iv~~g~~----~-~~~l~-----~~-~~nv~~~~~vP~~~ll~--~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~ 475 (568)
+|+.... + .+.++ .. ..++.+.+|+||.++|+ ++++|||||||||++||+++|||+|++|+++||+.
T Consensus 290 lwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 290 LVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred EEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 9876421 1 01111 11 23456669999999994 58889999999999999999999999999999999
Q ss_pred HHHHHH-HcCCCCCCCCCC---CCCHHHHHHHHHHhc-CH-----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 476 WGERVH-ARGLGPAPIPVE---EFSLDKLVDAIRFML-DP-----KVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 476 na~~v~-~~G~G~~~i~~~---~lt~e~L~~aI~~lL-d~-----~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
||++++ .+|+|+ .+..+ .++.++|+++|+++| ++ ++|++++++++++++.++..+.++.|.+.+.
T Consensus 370 na~~l~~~~g~gv-~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~GSS~~~l~~lv~~~~ 444 (453)
T PLN02764 370 NTRLLSDELKVSV-EVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPGLLTGYVDNFIESLQ 444 (453)
T ss_pred HHHHHHHHhceEE-EeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999995 589998 55432 589999999999999 63 3999999999999877666777776666553
No 17
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.7e-39 Score=344.73 Aligned_cols=384 Identities=15% Similarity=0.200 Sum_probs=242.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCch-----hhHh-----cCCceeeccCCChHHHHHHHhh
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDG--HRVRLATHANFK-----DFVL-----GAGLEFFPLGGDPKILAGYMVK 188 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rG--H~V~~~t~~~~~-----~~v~-----~~Gl~f~~i~~~~~~l~~~~~~ 188 (568)
++.||+++|++++||++|++.||+.|+.+| ..|||++++... ..+. ..++.|..++..+. . .
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~-~-----~ 75 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEE-K-----P 75 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCC-C-----C
Confidence 346999999999999999999999999998 999999766432 1222 12578888772110 0 0
Q ss_pred cCCCCCCCCCChh-HHHH---HH----HHHHHHHhhhcCCCCCCCCCCCC-CcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 189 NKGFLPSGPSEIP-IQRN---QL----KEIIYSLLPACKDPDPDTMVPFK-PDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~-pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
..+ ...+.. .... .+ ...+..++.... .... +++||+|.+..|+..+|+.+|||.+.+++
T Consensus 76 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~ 144 (468)
T PLN02207 76 TLG----GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLA-------LDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLT 144 (468)
T ss_pred ccc----cccCHHHHHHHHHHhcchhHHHHHHHHHHHhc-------cCCCCeEEEEECCcchHHHHHHHHhCCCEEEEEC
Confidence 000 001111 1111 11 112222221110 0112 48999999999999999999999999999
Q ss_pred cCCCCCCC---CCC---Cccc---------CCCccc-hhhHHHHHHHHHH--HHHHHHHHHHHHhhcCCCCcccccCCCC
Q 008369 260 MPWTPTSE---FPH---PLSR---------VKQPVA-YRLSYQIVDALIW--LGIRDMINDFRKKRLNLRRVTYLSGSYS 321 (568)
Q Consensus 260 ~p~~~~~~---~p~---p~~~---------~~~~~~-~~~~~~~~~~~~~--~~~~~~in~~r~~~l~l~~~~~~~~~~~ 321 (568)
++....+. +++ +... +..|.- ..+...-+....+ .....+...++. .
T Consensus 145 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~----~----------- 209 (468)
T PLN02207 145 TNSGFLAMMQYLADRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVEDGYDAYVKLAIL----F----------- 209 (468)
T ss_pred ccHHHHHHHHHhhhccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCccHHHHHHHHHh----c-----------
Confidence 87432111 000 0000 000000 0111111000000 001111111110 0
Q ss_pred CCCCCCeeeecCCCCCCCC-------CCCCCCceEecceeccCCCC-----CCCChhhHHhhhcCC--CcEEEeCCCCCC
Q 008369 322 SPLDVPYAYIWSPHLVPKP-------KDWGPKIDVVGFCFLDLAST-----YEPPDSLVKWLEDGE--KPIYIGFGSLPV 387 (568)
Q Consensus 322 ~~~~~~~~~~~sp~l~p~p-------~~~~~~v~~vGpl~~~~~~~-----~~~~~~l~~~L~~~~--p~VyVsfGS~~~ 387 (568)
.+....++++-.-+..+ +...+++..|||+....... ...++++.+||++++ .+|||||||...
T Consensus 210 --~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~ 287 (468)
T PLN02207 210 --TKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR 287 (468)
T ss_pred --ccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC
Confidence 01112233332222222 22346799999997532110 012257999999875 499999999987
Q ss_pred CChHHHHHHHHHHHHHcCceEEEEcCCCCC---CCC-----CCCCceEEEcCCCChhhhh--ccccEEEEeCChhHHHHH
Q 008369 388 EEPEKMTEIIVKALEITGHRGIINKGWGGL---GNL-----AESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAG 457 (568)
Q Consensus 388 ~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~---~~l-----~~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~Ea 457 (568)
...+++.+ ++.+|+.++++|||....... +.+ +..++|+.+.+|+||.++| +++++|||||||||++||
T Consensus 288 ~~~~q~~e-la~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Ea 366 (468)
T PLN02207 288 LRGPLVKE-IAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVES 366 (468)
T ss_pred CCHHHHHH-HHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHH
Confidence 66665555 599999999999997653211 111 2356788899999999998 558889999999999999
Q ss_pred HHhCCCEEeecCCCChhHHHHHHHH-cCCCCCCCC------C-CCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHhh--
Q 008369 458 LKAACPTTIVPFFGDQPFWGERVHA-RGLGPAPIP------V-EEFSLDKLVDAIRFMLD---PKVKEHAVELAKAME-- 524 (568)
Q Consensus 458 L~~GvP~vivP~~~DQ~~na~~v~~-~G~G~~~i~------~-~~lt~e~L~~aI~~lLd---~~~r~~a~~la~~~~-- 524 (568)
+++|||+|++|+++||+.||+++++ +|+|+ .+. . ..++.++|+++|+++|+ ++||+||++++++++
T Consensus 367 i~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv-~~~~~~~~~~~~~v~~e~i~~av~~vm~~~~~~~r~~a~~l~~~a~~A 445 (468)
T PLN02207 367 LWFGVPIVTWPMYAEQQLNAFLMVKELKLAV-ELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQMIQRA 445 (468)
T ss_pred HHcCCCEEecCccccchhhHHHHHHHhCceE-EEecccccccCCcccHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998765 99997 442 1 24599999999999993 789999999998887
Q ss_pred -cCCcH-HHHHHHHHHhC
Q 008369 525 -NEDGV-TGAVKAFYKHF 540 (568)
Q Consensus 525 -~~~g~-~~av~~i~~~l 540 (568)
.++|. ...++.|.+.+
T Consensus 446 ~~~GGSS~~~l~~~v~~~ 463 (468)
T PLN02207 446 TKNGGSSFAAIEKFIHDV 463 (468)
T ss_pred hcCCCcHHHHHHHHHHHH
Confidence 46664 56666666554
No 18
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=8.6e-40 Score=349.98 Aligned_cols=383 Identities=20% Similarity=0.296 Sum_probs=240.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc-----------CC---ceeeccCCChHHHHHHHh
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG-----------AG---LEFFPLGGDPKILAGYMV 187 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~-----------~G---l~f~~i~~~~~~l~~~~~ 187 (568)
+.||+++|++++||++|++.||+.|+.+|..|||++++.....+.. .+ +.|..++.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pd---------- 76 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFED---------- 76 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCC----------
Confidence 3699999999999999999999999999999999998865544331 11 22322221
Q ss_pred hcCCCCCCC--CCChhHHHH----HHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccC
Q 008369 188 KNKGFLPSG--PSEIPIQRN----QLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMP 261 (568)
Q Consensus 188 ~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p 261 (568)
|+.+.. ...+..... ....-++.++...... .-.+++||+|.+..|+..+|+.+|||.+.+++++
T Consensus 77 ---glp~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~------~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~ 147 (480)
T PLN02555 77 ---GWAEDDPRRQDLDLYLPQLELVGKREIPNLVKRYAEQ------GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQS 147 (480)
T ss_pred ---CCCCCcccccCHHHHHHHHHHhhhHHHHHHHHHHhcc------CCCceEEEECCcchHHHHHHHHcCCCeEEeeccc
Confidence 111000 001111111 1122222222211100 1134999999999999999999999999999887
Q ss_pred CCCCCCC--------CCCcc---c--CCCccchhhHHHHHHHHHH------HHHHHHHHHHHHhhcCCCCcccccCCCCC
Q 008369 262 WTPTSEF--------PHPLS---R--VKQPVAYRLSYQIVDALIW------LGIRDMINDFRKKRLNLRRVTYLSGSYSS 322 (568)
Q Consensus 262 ~~~~~~~--------p~p~~---~--~~~~~~~~~~~~~~~~~~~------~~~~~~in~~r~~~l~l~~~~~~~~~~~~ 322 (568)
.+..+.+ +.+.. . +..|.-..+...-+..+.+ ..+..+.+.++. .....
T Consensus 148 a~~~~~~~~~~~~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~a~-------- 215 (480)
T PLN02555 148 CACFSAYYHYYHGLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKN----LDKPF-------- 215 (480)
T ss_pred HHHHHHHHHHhhcCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHh----cccCC--------
Confidence 5432211 10100 0 0000000000000000000 001111111111 00000
Q ss_pred CCCCCeeeecC-CCCCC----CCCCCCCCceEecceeccCC---CC-----CCCChhhHHhhhcCCC--cEEEeCCCCCC
Q 008369 323 PLDVPYAYIWS-PHLVP----KPKDWGPKIDVVGFCFLDLA---ST-----YEPPDSLVKWLEDGEK--PIYIGFGSLPV 387 (568)
Q Consensus 323 ~~~~~~~~~~s-p~l~p----~p~~~~~~v~~vGpl~~~~~---~~-----~~~~~~l~~~L~~~~p--~VyVsfGS~~~ 387 (568)
...+++ .++.+ .-....+ +..|||+..... .. +..++++.+||+++++ +|||+|||+..
T Consensus 216 -----~vlvNTf~eLE~~~~~~l~~~~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~ 289 (480)
T PLN02555 216 -----CILIDTFQELEKEIIDYMSKLCP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVY 289 (480)
T ss_pred -----EEEEEchHHHhHHHHHHHhhCCC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccC
Confidence 011111 11110 0111123 888999864211 10 2334679999998864 89999999987
Q ss_pred CChHHHHHHHHHHHHHcCceEEEEcCCC----CC-------CCCCCCCceEEEcCCCChhhhh--ccccEEEEeCChhHH
Q 008369 388 EEPEKMTEIIVKALEITGHRGIINKGWG----GL-------GNLAESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTT 454 (568)
Q Consensus 388 ~~~~~l~~~i~~al~~~~~~~Iv~~g~~----~~-------~~l~~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~ 454 (568)
...+++.++ +.+++..+++|||..... +. +.++..++|+++++|+||.++| +++++|||||||||+
T Consensus 290 ~~~~q~~el-a~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~ 368 (480)
T PLN02555 290 LKQEQIDEI-AYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNST 368 (480)
T ss_pred CCHHHHHHH-HHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchH
Confidence 788777776 889999999999875321 01 1122356789999999999998 889999999999999
Q ss_pred HHHHHhCCCEEeecCCCChhHHHHHHHH-cCCCCCCCC-----CCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhh
Q 008369 455 AAGLKAACPTTIVPFFGDQPFWGERVHA-RGLGPAPIP-----VEEFSLDKLVDAIRFML-D---PKVKEHAVELAKAME 524 (568)
Q Consensus 455 ~EaL~~GvP~vivP~~~DQ~~na~~v~~-~G~G~~~i~-----~~~lt~e~L~~aI~~lL-d---~~~r~~a~~la~~~~ 524 (568)
+||+++|||+|++|+++||+.||+++++ +|+|+ .+. ...++.++|.++|+++| + .++|+||++++++.+
T Consensus 369 ~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv-~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~ 447 (480)
T PLN02555 369 MEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGV-RLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAE 447 (480)
T ss_pred HHHHHcCCCEEeCCCccccHHHHHHHHHHhCceE-EccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999966 59998 662 34689999999999999 5 469999999988765
Q ss_pred c---CCc-HHHHHHHHHHhCCCC
Q 008369 525 N---EDG-VTGAVKAFYKHFPGK 543 (568)
Q Consensus 525 ~---~~g-~~~av~~i~~~l~~~ 543 (568)
+ ++| ..+.++.|.+.+..+
T Consensus 448 ~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 448 AAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHhcCCCcHHHHHHHHHHHHHhc
Confidence 3 455 467777777766544
No 19
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.2e-38 Score=340.52 Aligned_cols=381 Identities=16% Similarity=0.201 Sum_probs=238.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCchhhH-----hcCCceeeccCCChHHHHHHHhhcCCCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQ-EDGHRVRLATHANFKDFV-----LGAGLEFFPLGGDPKILAGYMVKNKGFLP 194 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~-~rGH~V~~~t~~~~~~~v-----~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~ 194 (568)
.+.||+++|++++||++|++.||+.|+ ++|++|||++++.....+ ...++.++.++. +.. .++.+
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~-p~~--------~glp~ 74 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPS-PDI--------SGLVD 74 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCC-ccc--------cCCCC
Confidence 346999999999999999999999998 789999999887654333 223577777763 110 12211
Q ss_pred CCCCChhHH---HHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCC---CC
Q 008369 195 SGPSEIPIQ---RNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTS---EF 268 (568)
Q Consensus 195 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~---~~ 268 (568)
......... ...+..-++.++... .-+|++||+|.+..|+..+|+.+|||++.+++++....+ .+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 145 (481)
T PLN02992 75 PSAHVVTKIGVIMREAVPTLRSKIAEM---------HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYY 145 (481)
T ss_pred CCccHHHHHHHHHHHhHHHHHHHHHhc---------CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhh
Confidence 111111111 111112222222111 115899999999999999999999999999987653211 01
Q ss_pred CC---Ccc--------cCCCccchhhHHHHHH-HHHHH---HHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC
Q 008369 269 PH---PLS--------RVKQPVAYRLSYQIVD-ALIWL---GIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS 333 (568)
Q Consensus 269 p~---p~~--------~~~~~~~~~~~~~~~~-~~~~~---~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s 333 (568)
|. +.. ....|.-..+...-.. .+... ....+....+. ..... ...+++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~----~~~a~-------------gvlvNT 208 (481)
T PLN02992 146 PTLDKDIKEEHTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLA----YPKAD-------------GILVNT 208 (481)
T ss_pred hhhccccccccccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHh----cccCC-------------EEEEec
Confidence 10 000 0000000001100000 00000 01111111111 00000 011111
Q ss_pred -CCCCC-----------CCCCCCCCceEecceeccCCCCCCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHHHHHH
Q 008369 334 -PHLVP-----------KPKDWGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTEIIVK 399 (568)
Q Consensus 334 -p~l~p-----------~p~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~~i~~ 399 (568)
.++.+ ...-..+++..|||+....... ..++++.+||+++++ +|||||||......+++.++ +.
T Consensus 209 f~eLE~~~l~~l~~~~~~~~~~~~~v~~VGPl~~~~~~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el-a~ 286 (481)
T PLN02992 209 WEEMEPKSLKSLQDPKLLGRVARVPVYPIGPLCRPIQSS-KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTEL-AW 286 (481)
T ss_pred hHHHhHHHHHHHhhccccccccCCceEEecCccCCcCCC-cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHH-HH
Confidence 01100 0000124688999997532111 234569999998754 99999999987777777665 99
Q ss_pred HHHHcCceEEEEcCCC--C--------------CCC-CCCCCc---------eEEEcCCCChhhhhcc--ccEEEEeCCh
Q 008369 400 ALEITGHRGIINKGWG--G--------------LGN-LAESKD---------FVYLLDNCPHDWLFSR--CLAVVHHGGA 451 (568)
Q Consensus 400 al~~~~~~~Iv~~g~~--~--------------~~~-l~~~~~---------nv~~~~~vP~~~ll~~--~~~~I~HGG~ 451 (568)
+|+.++++|||+.... + .+. ...+|+ ++++.+|+||.++|++ +.+|||||||
T Consensus 287 gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~ 366 (481)
T PLN02992 287 GLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGW 366 (481)
T ss_pred HHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCch
Confidence 9999999999987321 0 000 112344 4888899999999955 6679999999
Q ss_pred hHHHHHHHhCCCEEeecCCCChhHHHHHH-HHcCCCCCCCCC--CCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhh
Q 008369 452 GTTAAGLKAACPTTIVPFFGDQPFWGERV-HARGLGPAPIPV--EEFSLDKLVDAIRFML-D---PKVKEHAVELAKAME 524 (568)
Q Consensus 452 gT~~EaL~~GvP~vivP~~~DQ~~na~~v-~~~G~G~~~i~~--~~lt~e~L~~aI~~lL-d---~~~r~~a~~la~~~~ 524 (568)
||++||+++|||+|++|+++||+.||+++ +++|+|+ .++. ..++.++|+++|++++ + .+++++|++++++.+
T Consensus 367 nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv-~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 367 SSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAV-RSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAE 445 (481)
T ss_pred hHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeE-EecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5999998 6765 3589999999999999 5 478999999987665
Q ss_pred c-----CCcH-HHHHHHHHHh
Q 008369 525 N-----EDGV-TGAVKAFYKH 539 (568)
Q Consensus 525 ~-----~~g~-~~av~~i~~~ 539 (568)
+ ++|. .+.++.|.+.
T Consensus 446 ~Av~~~~GGSS~~~l~~~v~~ 466 (481)
T PLN02992 446 MSLSIDGGGVAHESLCRVTKE 466 (481)
T ss_pred HHhcCCCCCchHHHHHHHHHH
Confidence 2 2553 4455554443
No 20
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=7.3e-39 Score=340.12 Aligned_cols=378 Identities=15% Similarity=0.202 Sum_probs=234.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHh---cCCceeeccCCChHHHHHHHhhcCCCCCCC-
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVL---GAGLEFFPLGGDPKILAGYMVKNKGFLPSG- 196 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~---~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~- 196 (568)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.....+. ..++.|..++. |+.+..
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipd-------------glp~~~~ 70 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISD-------------GYDQGGF 70 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCC-------------CCCCccc
Confidence 3469999999999999999999999999999999998875433332 12477777752 111100
Q ss_pred --CCChhHHHH----HHHHHHHHHhhhcCCCCCCCCCCCCC-cEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCC
Q 008369 197 --PSEIPIQRN----QLKEIIYSLLPACKDPDPDTMVPFKP-DAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFP 269 (568)
Q Consensus 197 --~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p-DlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p 269 (568)
......... ....-++.++..... ..+| ++||+|.+..|+..+|+.+|||.+.+++++.+....+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~ 143 (449)
T PLN02173 71 SSAGSVPEYLQNFKTFGSKTVADIIRKHQS-------TDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINY 143 (449)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHhhc-------cCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHH
Confidence 011111111 112222222222110 1245 99999999999999999999999999986533211110
Q ss_pred C----------CcccCCCccchhhHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC-CCCC
Q 008369 270 H----------PLSRVKQPVAYRLSYQIVDA-LIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS-PHLV 337 (568)
Q Consensus 270 ~----------p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s-p~l~ 337 (568)
+ +...++......+...+.+. ........+.+.++. +.... ...+++ .++.
T Consensus 144 ~~~~~~~~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~vlvNTf~eLE 206 (449)
T PLN02173 144 LSYINNGSLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTN----FDKAD-------------FVLVNSFHDLD 206 (449)
T ss_pred hHHhccCCccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhh----hccCC-------------EEEEeCHHHhh
Confidence 0 00000000000000000000 000000111111111 00000 011111 1111
Q ss_pred C----CCCCCCCCceEecceecc--------CCCC-----C--CCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHHH
Q 008369 338 P----KPKDWGPKIDVVGFCFLD--------LAST-----Y--EPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTEI 396 (568)
Q Consensus 338 p----~p~~~~~~v~~vGpl~~~--------~~~~-----~--~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~~ 396 (568)
+ .-+.. .++..|||+... .... + ...+++.+||+++++ +|||||||+.....+++.++
T Consensus 207 ~~~~~~~~~~-~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~el 285 (449)
T PLN02173 207 LHENELLSKV-CPVLTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEI 285 (449)
T ss_pred HHHHHHHHhc-CCeeEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHH
Confidence 0 00111 257889998631 0000 0 123458999998763 99999999987777776665
Q ss_pred HHHHHHHcCceEEEEcCCCCCC-----CCCCC-CceEEEcCCCChhhhhcc--ccEEEEeCChhHHHHHHHhCCCEEeec
Q 008369 397 IVKALEITGHRGIINKGWGGLG-----NLAES-KDFVYLLDNCPHDWLFSR--CLAVVHHGGAGTTAAGLKAACPTTIVP 468 (568)
Q Consensus 397 i~~al~~~~~~~Iv~~g~~~~~-----~l~~~-~~nv~~~~~vP~~~ll~~--~~~~I~HGG~gT~~EaL~~GvP~vivP 468 (568)
+.+| .+.+|+|+......+ .++.. ++|+++.+|+||.++|++ +.+|||||||||++|++++|||+|++|
T Consensus 286 -a~gL--s~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 286 -ASAI--SNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred -HHHh--cCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC
Confidence 8888 678888876422111 11223 578999999999999955 669999999999999999999999999
Q ss_pred CCCChhHHHHHHHH-cCCCCCCCCCC----CCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhc---CCc-HHHHHHH
Q 008369 469 FFGDQPFWGERVHA-RGLGPAPIPVE----EFSLDKLVDAIRFML-D---PKVKEHAVELAKAMEN---EDG-VTGAVKA 535 (568)
Q Consensus 469 ~~~DQ~~na~~v~~-~G~G~~~i~~~----~lt~e~L~~aI~~lL-d---~~~r~~a~~la~~~~~---~~g-~~~av~~ 535 (568)
+++||+.||+++++ +|+|+ .+..+ .++.++|+++|+++| + .++|++|++++++.++ ++| ..+.++.
T Consensus 363 ~~~DQ~~Na~~v~~~~g~Gv-~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~ 441 (449)
T PLN02173 363 QWTDQPMNAKYIQDVWKVGV-RVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININT 441 (449)
T ss_pred chhcchHHHHHHHHHhCceE-EEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999999999975 48887 56432 268999999999999 5 4689999999887773 556 4677777
Q ss_pred HHHhC
Q 008369 536 FYKHF 540 (568)
Q Consensus 536 i~~~l 540 (568)
|.+.+
T Consensus 442 ~v~~~ 446 (449)
T PLN02173 442 FVSKI 446 (449)
T ss_pred HHHHh
Confidence 76655
No 21
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.8e-38 Score=337.64 Aligned_cols=382 Identities=16% Similarity=0.240 Sum_probs=231.5
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCc--hhhHhc----CCceeeccCCChHHHHHHHhhcCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQE-DGHRVRLATHANF--KDFVLG----AGLEFFPLGGDPKILAGYMVKNKGFLP 194 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~-rGH~V~~~t~~~~--~~~v~~----~Gl~f~~i~~~~~~l~~~~~~~~~~~~ 194 (568)
+.||+++|++++||++|++.||+.|+. +|+.|||++++.. +..+.. .++.|..++. |+ |
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~d-------------gl-p 68 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSD-------------GF-D 68 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCC-------------CC-C
Confidence 359999999999999999999999996 7999999988742 222221 1467777642 11 1
Q ss_pred CC----CCChhHHH----HHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCC
Q 008369 195 SG----PSEIPIQR----NQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTS 266 (568)
Q Consensus 195 ~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~ 266 (568)
.+ ........ ..+..-+..++...... .-.+++||+|.+..|+..+|+.+|||.+.+++++....+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~------~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~ 142 (455)
T PLN02152 69 DGVISNTDDVQNRLVNFERNGDKALSDFIEANLNG------DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFD 142 (455)
T ss_pred CccccccccHHHHHHHHHHhccHHHHHHHHHhhcc------CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHH
Confidence 11 01111111 11122222222211100 113599999999999999999999999999998764321
Q ss_pred CCCCC------cccCCCccchhhHH---HHH----HHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecC
Q 008369 267 EFPHP------LSRVKQPVAYRLSY---QIV----DALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWS 333 (568)
Q Consensus 267 ~~p~p------~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~s 333 (568)
.+.+. ...++.....+... .+. +......+.+....+++.. -. ..+...+ .++ .
T Consensus 143 ~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~vlvNTf---~eL------E 209 (455)
T PLN02152 143 IYYNYSTGNNSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEES--NP--KILVNTF---DSL------E 209 (455)
T ss_pred HHHHhhccCCCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhcc--CC--EEEEeCh---HHh------h
Confidence 11000 00011000000000 000 0000011111112111100 00 0000000 000 0
Q ss_pred CCCCCCCCCCCCCceEecceeccC---CC---C----CCCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHHHHHHHH
Q 008369 334 PHLVPKPKDWGPKIDVVGFCFLDL---AS---T----YEPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTEIIVKAL 401 (568)
Q Consensus 334 p~l~p~p~~~~~~v~~vGpl~~~~---~~---~----~~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~~i~~al 401 (568)
+..+..-.. ..+..|||+.... .. . ++.+.++.+||++++ .+|||||||+.....+++.++ +.+|
T Consensus 210 ~~~~~~l~~--~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el-a~gL 286 (455)
T PLN02152 210 PEFLTAIPN--IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEEL-ARAL 286 (455)
T ss_pred HHHHHhhhc--CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHH-HHHH
Confidence 000000011 1488899986421 00 0 122347999999875 599999999987777766665 9999
Q ss_pred HHcCceEEEEcCCCC--------C---------CCCCCCCceEEEcCCCChhhhh--ccccEEEEeCChhHHHHHHHhCC
Q 008369 402 EITGHRGIINKGWGG--------L---------GNLAESKDFVYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAGLKAAC 462 (568)
Q Consensus 402 ~~~~~~~Iv~~g~~~--------~---------~~l~~~~~nv~~~~~vP~~~ll--~~~~~~I~HGG~gT~~EaL~~Gv 462 (568)
+.++.+|||...... . +..+..++|+++.+|+||.++| +++.+||||||+||++||+++||
T Consensus 287 ~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~Gv 366 (455)
T PLN02152 287 IEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGV 366 (455)
T ss_pred HHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCC
Confidence 999999999764310 0 0011256788999999999998 55669999999999999999999
Q ss_pred CEEeecCCCChhHHHHHHHH-cCCCCCCCC--CC-CCCHHHHHHHHHHhc-CH--HHHHHHHHHHHHhhc---CCcH-HH
Q 008369 463 PTTIVPFFGDQPFWGERVHA-RGLGPAPIP--VE-EFSLDKLVDAIRFML-DP--KVKEHAVELAKAMEN---EDGV-TG 531 (568)
Q Consensus 463 P~vivP~~~DQ~~na~~v~~-~G~G~~~i~--~~-~lt~e~L~~aI~~lL-d~--~~r~~a~~la~~~~~---~~g~-~~ 531 (568)
|+|++|+++||+.||+++++ +|+|+ .+. .+ .++.++|+++|+++| |+ ++|++|++++++.++ ++|. .+
T Consensus 367 P~l~~P~~~DQ~~na~~~~~~~~~G~-~~~~~~~~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~a~~~ggsS~~ 445 (455)
T PLN02152 367 PVVAFPMWSDQPANAKLLEEIWKTGV-RVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIEAGGEGGSSDK 445 (455)
T ss_pred CEEeccccccchHHHHHHHHHhCceE-EeecCcCCcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999976 46665 332 22 469999999999999 64 489999777665554 5554 56
Q ss_pred HHHHHHHhC
Q 008369 532 AVKAFYKHF 540 (568)
Q Consensus 532 av~~i~~~l 540 (568)
.++.|.+.+
T Consensus 446 nl~~li~~i 454 (455)
T PLN02152 446 NVEAFVKTL 454 (455)
T ss_pred HHHHHHHHh
Confidence 666665543
No 22
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.9e-38 Score=341.59 Aligned_cols=391 Identities=17% Similarity=0.196 Sum_probs=236.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCC----CeEEEEeCCCc--------hhhHh---cC--CceeeccCCChHHHH
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDG----HRVRLATHANF--------KDFVL---GA--GLEFFPLGGDPKILA 183 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rG----H~V~~~t~~~~--------~~~v~---~~--Gl~f~~i~~~~~~l~ 183 (568)
++.||+++|++++||++|++.||+.|+.+| +.|||++.+.. ...+. .. ++.|..++...
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~---- 77 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE---- 77 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC----
Confidence 456999999999999999999999999986 78999986532 11111 11 47777776321
Q ss_pred HHHhhcCCCCCCCCCChhHHHH----HHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 184 GYMVKNKGFLPSGPSEIPIQRN----QLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
.|.+......... .+..-++.++... .-.+++||+|.+..|+..+|+.+|||.+.+++
T Consensus 78 ---------~p~~~e~~~~~~~~~~~~~~~~l~~~L~~l---------~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t 139 (480)
T PLN00164 78 ---------PPTDAAGVEEFISRYIQLHAPHVRAAIAGL---------SCPVAALVVDFFCTPLLDVARELAVPAYVYFT 139 (480)
T ss_pred ---------CCCccccHHHHHHHHHHhhhHHHHHHHHhc---------CCCceEEEECCcchhHHHHHHHhCCCEEEEEC
Confidence 1111111111111 1111222221111 11469999999999999999999999999998
Q ss_pred cCCCCCCCCCCC----------cccC----CCccchhhHHHHHHHHH-------HHHHHHHHHHHHHh-hcCCCCccccc
Q 008369 260 MPWTPTSEFPHP----------LSRV----KQPVAYRLSYQIVDALI-------WLGIRDMINDFRKK-RLNLRRVTYLS 317 (568)
Q Consensus 260 ~p~~~~~~~p~p----------~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~in~~r~~-~l~l~~~~~~~ 317 (568)
++....+.+.+. .... ..|.-..+...-+.... ...+....+..++. .+-.+....+.
T Consensus 140 ~sA~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE 219 (480)
T PLN00164 140 STAAMLALMLRLPALDEEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELE 219 (480)
T ss_pred ccHHHHHHHhhhhhhcccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhh
Confidence 875431111110 0000 00000000000000000 00000011111110 00000000000
Q ss_pred CCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccC--CCCCCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHH
Q 008369 318 GSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDL--ASTYEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKM 393 (568)
Q Consensus 318 ~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~--~~~~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l 393 (568)
. +. ..++...... +..-.+++..|||+.... ......++++.+||+++++ +|||+|||......+++
T Consensus 220 ~------~~-~~~~~~~~~~--~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~ 290 (480)
T PLN00164 220 P------GV-LAAIADGRCT--PGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQV 290 (480)
T ss_pred H------HH-HHHHHhcccc--ccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHH
Confidence 0 00 0000000000 000014688999997421 1111234579999998754 89999999977777775
Q ss_pred HHHHHHHHHHcCceEEEEcCCCCC--------CCC-CCCCce---------EEEcCCCChhhhhcc--ccEEEEeCChhH
Q 008369 394 TEIIVKALEITGHRGIINKGWGGL--------GNL-AESKDF---------VYLLDNCPHDWLFSR--CLAVVHHGGAGT 453 (568)
Q Consensus 394 ~~~i~~al~~~~~~~Iv~~g~~~~--------~~l-~~~~~n---------v~~~~~vP~~~ll~~--~~~~I~HGG~gT 453 (568)
.+ ++.+|+..+++|||+...... ... ..+|+| +++.+|+||.++|++ +.+|||||||||
T Consensus 291 ~e-la~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS 369 (480)
T PLN00164 291 RE-IAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNS 369 (480)
T ss_pred HH-HHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccch
Confidence 55 599999999999987543210 011 113333 667799999999965 559999999999
Q ss_pred HHHHHHhCCCEEeecCCCChhHHHHHH-HHcCCCCCCCCC-----CCCCHHHHHHHHHHhc-CH-----HHHHHHHHHHH
Q 008369 454 TAAGLKAACPTTIVPFFGDQPFWGERV-HARGLGPAPIPV-----EEFSLDKLVDAIRFML-DP-----KVKEHAVELAK 521 (568)
Q Consensus 454 ~~EaL~~GvP~vivP~~~DQ~~na~~v-~~~G~G~~~i~~-----~~lt~e~L~~aI~~lL-d~-----~~r~~a~~la~ 521 (568)
++|++++|||+|++|+++||+.||+++ +.+|+|+ .+.. +.++.++|+++|+++| ++ ++|++|+++++
T Consensus 370 ~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~-~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~ 448 (480)
T PLN00164 370 VLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAV-AMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKA 448 (480)
T ss_pred HHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEE-EeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 999999999999999999999999887 5689998 5642 2379999999999999 63 37999999988
Q ss_pred Hhhc---CCc-HHHHHHHHHHhCCCCC
Q 008369 522 AMEN---EDG-VTGAVKAFYKHFPGKK 544 (568)
Q Consensus 522 ~~~~---~~g-~~~av~~i~~~l~~~~ 544 (568)
++++ ++| ..+.++.|.+.+...+
T Consensus 449 ~~~~a~~~gGSS~~~l~~~v~~~~~~~ 475 (480)
T PLN00164 449 ACRKAVEEGGSSYAALQRLAREIRHGA 475 (480)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 7765 455 4677788777765443
No 23
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.8e-38 Score=337.29 Aligned_cols=397 Identities=15% Similarity=0.193 Sum_probs=234.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCC---eEEEEeCCC-----chhhHhc-----CCceeeccCCChHHHHHHHhh
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGH---RVRLATHAN-----FKDFVLG-----AGLEFFPLGGDPKILAGYMVK 188 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH---~V~~~t~~~-----~~~~v~~-----~Gl~f~~i~~~~~~l~~~~~~ 188 (568)
+.||+++|++++||++|++.||+.|+.+|. .||+++... ....+.. .++.|..++... .
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~------- 74 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQ-D------- 74 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCC-C-------
Confidence 459999999999999999999999999984 456665321 1222322 257888776321 0
Q ss_pred cCCC--CCCCC-CChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCC
Q 008369 189 NKGF--LPSGP-SEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPT 265 (568)
Q Consensus 189 ~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~ 265 (568)
.++. ..... ..+....+.+..-++..+.......... ..-.+++||+|.+..|+..+|+.+|||.+.+++++....
T Consensus 75 p~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 75 PPPMELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDES-DSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred CccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 0000 00000 0011111122222222222211100000 011359999999999999999999999999999874321
Q ss_pred CC----------CC-C-Cccc----CCCccc-hhhHHHHHHHHHH--HHHHHHHHHHHHhhcCCCCcccccCCCCCCCCC
Q 008369 266 SE----------FP-H-PLSR----VKQPVA-YRLSYQIVDALIW--LGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDV 326 (568)
Q Consensus 266 ~~----------~p-~-p~~~----~~~~~~-~~~~~~~~~~~~~--~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~ 326 (568)
+. .+ . +... ...|.- ..+....+....+ .........++. ......+. +
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~~~~~~~~~~~~----~~~a~~vl--------v 221 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKESYEAWVEIAER----FPEAKGIL--------V 221 (475)
T ss_pred HHHHHHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcchHHHHHHHHHh----hcccCEee--------e
Confidence 11 00 0 0000 000000 0011100000000 000001111111 00000000 0
Q ss_pred CeeeecCCCCCCC----CCCCCCCceEecceeccCCC---C--CCCChhhHHhhhcCCC--cEEEeCCCCCCCChHHHHH
Q 008369 327 PYAYIWSPHLVPK----PKDWGPKIDVVGFCFLDLAS---T--YEPPDSLVKWLEDGEK--PIYIGFGSLPVEEPEKMTE 395 (568)
Q Consensus 327 ~~~~~~sp~l~p~----p~~~~~~v~~vGpl~~~~~~---~--~~~~~~l~~~L~~~~p--~VyVsfGS~~~~~~~~l~~ 395 (568)
...+...+..+.. ...+ +++..|||+...... . .....++.+||+++++ +|||+|||+.....+++.+
T Consensus 222 NTf~eLE~~~~~~l~~~~~~~-p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e 300 (475)
T PLN02167 222 NSFTELEPNAFDYFSRLPENY-PPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKE 300 (475)
T ss_pred ccHHHHHHHHHHHHHhhcccC-CeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHH
Confidence 0000000000000 0112 468999998753211 0 0122579999998764 9999999997777777666
Q ss_pred HHHHHHHHcCceEEEEcCCCCCC---CCCCCC--------ceEEEcCCCChhhhhcc--ccEEEEeCChhHHHHHHHhCC
Q 008369 396 IIVKALEITGHRGIINKGWGGLG---NLAESK--------DFVYLLDNCPHDWLFSR--CLAVVHHGGAGTTAAGLKAAC 462 (568)
Q Consensus 396 ~i~~al~~~~~~~Iv~~g~~~~~---~l~~~~--------~nv~~~~~vP~~~ll~~--~~~~I~HGG~gT~~EaL~~Gv 462 (568)
+ +.+|+.++++|||+.+..... ....+| +++++++|+||.++|++ +++|||||||||++||+++||
T Consensus 301 l-a~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~Gv 379 (475)
T PLN02167 301 I-AQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGV 379 (475)
T ss_pred H-HHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCC
Confidence 5 999999999999986532110 011233 33578899999999955 889999999999999999999
Q ss_pred CEEeecCCCChhHHHHH-HHHcCCCCCCCCC-------CCCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHhhc---CCc-
Q 008369 463 PTTIVPFFGDQPFWGER-VHARGLGPAPIPV-------EEFSLDKLVDAIRFML-DP-KVKEHAVELAKAMEN---EDG- 528 (568)
Q Consensus 463 P~vivP~~~DQ~~na~~-v~~~G~G~~~i~~-------~~lt~e~L~~aI~~lL-d~-~~r~~a~~la~~~~~---~~g- 528 (568)
|+|++|+++||+.||++ ++.+|+|+ .+.. ..++.++|+++|+++| ++ ++|++|++++++++. ++|
T Consensus 380 P~l~~P~~~DQ~~na~~~~~~~g~g~-~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~r~~a~~~~~~~~~av~~gGs 458 (475)
T PLN02167 380 PIATWPMYAEQQLNAFTMVKELGLAV-ELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMDGGS 458 (475)
T ss_pred CEEeccccccchhhHHHHHHHhCeeE-EeecccccccCCcccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999976 68999998 5643 2479999999999999 54 799999999887664 555
Q ss_pred HHHHHHHHHHhCCC
Q 008369 529 VTGAVKAFYKHFPG 542 (568)
Q Consensus 529 ~~~av~~i~~~l~~ 542 (568)
..+.++.|.+.+..
T Consensus 459 S~~~l~~~v~~i~~ 472 (475)
T PLN02167 459 SFVAVKRFIDDLLG 472 (475)
T ss_pred HHHHHHHHHHHHHh
Confidence 46777777766543
No 24
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.9e-38 Score=334.75 Aligned_cols=373 Identities=14% Similarity=0.115 Sum_probs=225.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCC--CeEEEE--eCCCchhh----Hhc-----CCceeeccCCChHHHHHHHhh
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDG--HRVRLA--THANFKDF----VLG-----AGLEFFPLGGDPKILAGYMVK 188 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rG--H~V~~~--t~~~~~~~----v~~-----~Gl~f~~i~~~~~~l~~~~~~ 188 (568)
.-||+++|++++||++||+.||+.|+.+| +.|++. ++...... +.. .++.|..++... ..
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-~~------ 75 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVT-PY------ 75 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCC-CC------
Confidence 46899999999999999999999999998 566664 33322111 111 257777765320 00
Q ss_pred cCCCCCCCCCChh-HH---HHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCC
Q 008369 189 NKGFLPSGPSEIP-IQ---RNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 189 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
++..+. ..... .. ......-++.++.... ..-.+++||+|.+..|+..+|+.+|||.+.+++++...
T Consensus 76 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~-------~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~ 146 (451)
T PLN03004 76 -SSSSTS-RHHHESLLLEILCFSNPSVHRTLFSLS-------RNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAAC 146 (451)
T ss_pred -CCcccc-ccCHHHHHHHHHHhhhHHHHHHHHhcC-------CCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHH
Confidence 000000 00111 01 1112222233322221 01135999999999999999999999999999887543
Q ss_pred CCCCCCC--------ccc------CCCccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeee
Q 008369 265 TSEFPHP--------LSR------VKQPVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAY 330 (568)
Q Consensus 265 ~~~~p~p--------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~ 330 (568)
.+.+.|. ... +..|.-..+...-+....+..-......+.+....+..... ..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~-------------vl 213 (451)
T PLN03004 147 LAFSFYLPTIDETTPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSG-------------II 213 (451)
T ss_pred HHHHHHHHhccccccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCe-------------ee
Confidence 2111110 000 00000000000000000000000000111110000000000 01
Q ss_pred ecC-CCCCC----C-CCCC-CCCceEecceeccCC-C-CC-CCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHHHHH
Q 008369 331 IWS-PHLVP----K-PKDW-GPKIDVVGFCFLDLA-S-TY-EPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTEIIV 398 (568)
Q Consensus 331 ~~s-p~l~p----~-p~~~-~~~v~~vGpl~~~~~-~-~~-~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~~i~ 398 (568)
+++ .++.+ . ...+ .+++..|||+..... . .. ..+.++.+||++++ .+|||||||......+++.++ +
T Consensus 214 ~NTf~eLE~~~l~~l~~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~el-a 292 (451)
T PLN03004 214 INTFDALENRAIKAITEELCFRNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEI-A 292 (451)
T ss_pred eeeHHHhHHHHHHHHHhcCCCCCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHH-H
Confidence 111 01100 0 0112 246899999975321 1 11 11246899999875 399999999977777776665 9
Q ss_pred HHHHHcCceEEEEcCCC-CCC----CCCC-CC---------ceEEEcCCCChhhhhcccc--EEEEeCChhHHHHHHHhC
Q 008369 399 KALEITGHRGIINKGWG-GLG----NLAE-SK---------DFVYLLDNCPHDWLFSRCL--AVVHHGGAGTTAAGLKAA 461 (568)
Q Consensus 399 ~al~~~~~~~Iv~~g~~-~~~----~l~~-~~---------~nv~~~~~vP~~~ll~~~~--~~I~HGG~gT~~EaL~~G 461 (568)
.+|+.++.+|||..... ..+ .... +| .|+.+.+|+||.++|++++ +|||||||||++||+++|
T Consensus 293 ~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~G 372 (451)
T PLN03004 293 VGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAG 372 (451)
T ss_pred HHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcC
Confidence 99999999999987532 100 1111 23 5888899999999996655 599999999999999999
Q ss_pred CCEEeecCCCChhHHHHHHH-HcCCCCCCCCCC---CCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc
Q 008369 462 CPTTIVPFFGDQPFWGERVH-ARGLGPAPIPVE---EFSLDKLVDAIRFML-DPKVKEHAVELAKAMEN 525 (568)
Q Consensus 462 vP~vivP~~~DQ~~na~~v~-~~G~G~~~i~~~---~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~ 525 (568)
||+|++|+++||+.||++++ ++|+|+ .++.+ .++.++|+++|+++| |++||++|++++++.+.
T Consensus 373 VP~v~~P~~~DQ~~na~~~~~~~g~g~-~l~~~~~~~~~~e~l~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 373 VPMVAWPLYAEQRFNRVMIVDEIKIAI-SMNESETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred CCEEeccccccchhhHHHHHHHhCceE-EecCCcCCccCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999996 579998 67643 479999999999999 99999999999876654
No 25
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=5.1e-37 Score=329.10 Aligned_cols=386 Identities=18% Similarity=0.205 Sum_probs=241.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc---------CCceeeccCCChHHHHHHHhhcCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG---------AGLEFFPLGGDPKILAGYMVKNKG 191 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~---------~Gl~f~~i~~~~~~l~~~~~~~~~ 191 (568)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.....+.. ..+.|..++.... ..|
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~--------~dg 78 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCK--------EVG 78 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCc--------cCC
Confidence 34799999999999999999999999999999999988765443322 1367777762110 012
Q ss_pred CCCCCC--CChh--HHHHH-------HHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEecc
Q 008369 192 FLPSGP--SEIP--IQRNQ-------LKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTM 260 (568)
Q Consensus 192 ~~~~~~--~~~~--~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~ 260 (568)
+.+... ..+. ..... +..-++.++.. . .-+|++||+|.+..|+..+|+.+|||.+.++++
T Consensus 79 lp~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~-------~--~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~ 149 (491)
T PLN02534 79 LPIGCENLDTLPSRDLLRKFYDAVDKLQQPLERFLEQ-------A--KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGM 149 (491)
T ss_pred CCCCccccccCCcHHHHHHHHHHHHHhHHHHHHHHHh-------c--CCCCcEEEECCccHHHHHHHHHhCCCeEEEecc
Confidence 111100 0000 01111 11122222111 0 125799999999999999999999999999987
Q ss_pred CCCCCCC-------CCCC-c-c-----cCCC-ccchhhHHHHHHH-HHH-HHHHHHHHHHHHhhcCCCCcccccCCCCCC
Q 008369 261 PWTPTSE-------FPHP-L-S-----RVKQ-PVAYRLSYQIVDA-LIW-LGIRDMINDFRKKRLNLRRVTYLSGSYSSP 323 (568)
Q Consensus 261 p~~~~~~-------~p~p-~-~-----~~~~-~~~~~~~~~~~~~-~~~-~~~~~~in~~r~~~l~l~~~~~~~~~~~~~ 323 (568)
+.+..+. .++. . . .++. +....+...-+.. +.+ .....+.+.++. ....
T Consensus 150 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~~~~~~~~~~~~--~~~~------------ 215 (491)
T PLN02534 150 CCFSLLSSHNIRLHNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLPDLDDVRNKMRE--AEST------------ 215 (491)
T ss_pred hHHHHHHHHHHHHhcccccCCCCCceeecCCCCccccccHHHCChhhcCcccHHHHHHHHHh--hccc------------
Confidence 6543211 0000 0 0 0000 0000011100000 000 001111222221 0000
Q ss_pred CCCCeeeecC-CCCCC-----CCCCCCCCceEecceeccCCC---------CCC-CChhhHHhhhcCC--CcEEEeCCCC
Q 008369 324 LDVPYAYIWS-PHLVP-----KPKDWGPKIDVVGFCFLDLAS---------TYE-PPDSLVKWLEDGE--KPIYIGFGSL 385 (568)
Q Consensus 324 ~~~~~~~~~s-p~l~p-----~p~~~~~~v~~vGpl~~~~~~---------~~~-~~~~l~~~L~~~~--p~VyVsfGS~ 385 (568)
.....+++ .++.+ ....+++++..|||+...... ... ...++.+||++++ .+|||+|||.
T Consensus 216 --a~~vlvNTf~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~ 293 (491)
T PLN02534 216 --AFGVVVNSFNELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSL 293 (491)
T ss_pred --CCEEEEecHHHhhHHHHHHHHhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEeccc
Confidence 00011111 11111 012244578999998642110 001 2346899999875 4999999999
Q ss_pred CCCChHHHHHHHHHHHHHcCceEEEEcCCCC----C------CCCC-C-CCceEEEcCCCChhhhhcc--ccEEEEeCCh
Q 008369 386 PVEEPEKMTEIIVKALEITGHRGIINKGWGG----L------GNLA-E-SKDFVYLLDNCPHDWLFSR--CLAVVHHGGA 451 (568)
Q Consensus 386 ~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~----~------~~l~-~-~~~nv~~~~~vP~~~ll~~--~~~~I~HGG~ 451 (568)
....++++.++ +.+|+.++.+|||+..... . +.+. . .+.++++.+|+||..+|++ +.+|||||||
T Consensus 294 ~~~~~~q~~e~-a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ 372 (491)
T PLN02534 294 CRLVPSQLIEL-GLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGW 372 (491)
T ss_pred ccCCHHHHHHH-HHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCcc
Confidence 98899998887 6999999999999875210 0 1111 2 2467788899999999965 5569999999
Q ss_pred hHHHHHHHhCCCEEeecCCCChhHHHHHH-HHcCCCCCCCCC------------C-CCCHHHHHHHHHHhcC------HH
Q 008369 452 GTTAAGLKAACPTTIVPFFGDQPFWGERV-HARGLGPAPIPV------------E-EFSLDKLVDAIRFMLD------PK 511 (568)
Q Consensus 452 gT~~EaL~~GvP~vivP~~~DQ~~na~~v-~~~G~G~~~i~~------------~-~lt~e~L~~aI~~lLd------~~ 511 (568)
||++||+++|||+|++|+++||+.||+++ +.+|+|+ .+.. . ..+.++++++|+++|+ .+
T Consensus 373 ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv-~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~ 451 (491)
T PLN02534 373 NSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGV-RVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGER 451 (491)
T ss_pred HHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceE-EecccccccccccccccCccCHHHHHHHHHHHhccccccHHH
Confidence 99999999999999999999999999999 5788887 4421 1 3799999999999993 47
Q ss_pred HHHHHHHHHHHhhc---CCc-HHHHHHHHHHhCC
Q 008369 512 VKEHAVELAKAMEN---EDG-VTGAVKAFYKHFP 541 (568)
Q Consensus 512 ~r~~a~~la~~~~~---~~g-~~~av~~i~~~l~ 541 (568)
+|+||+++++++++ ++| ..+.++.|.+.+.
T Consensus 452 ~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 452 RRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 99999999877664 555 4666677666553
No 26
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.1e-36 Score=321.47 Aligned_cols=386 Identities=13% Similarity=0.145 Sum_probs=233.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCchhh------HhcC----CceeeccCCChHHHHHHHhhcCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED-GHRVRLATHANFKDF------VLGA----GLEFFPLGGDPKILAGYMVKNKG 191 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r-GH~V~~~t~~~~~~~------v~~~----Gl~f~~i~~~~~~l~~~~~~~~~ 191 (568)
.||+++|++++||++|++.||+.|+.+ |..|||+++...... +... ++.+..++.. . ..+
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~-~--------~~~ 74 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSV-D--------VDN 74 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCC-c--------ccc
Confidence 489999999999999999999999977 999999976542221 2211 4777777631 1 011
Q ss_pred CCCCCCCChhHHHH---HHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCE-EEEeccCCCCCC-
Q 008369 192 FLPSGPSEIPIQRN---QLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPL-HIIFTMPWTPTS- 266 (568)
Q Consensus 192 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~-v~~~t~p~~~~~- 266 (568)
+.+.+......... .+..-++.++.... -+|++||+|.+..|+..+|+.+|||+ +.+++++.+..+
T Consensus 75 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~ 145 (470)
T PLN03015 75 LVEPDATIFTKMVVKMRAMKPAVRDAVKSMK---------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAV 145 (470)
T ss_pred CCCCCccHHHHHHHHHHhchHHHHHHHHhcC---------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHH
Confidence 10111111101111 11122222221110 15799999999999999999999995 666555432110
Q ss_pred --CC--------------CCCcccCCCccchhhHH---HHHHHHHHHHHHHHHHHHHHhhcCCCCccc-ccCCCCCCCCC
Q 008369 267 --EF--------------PHPLSRVKQPVAYRLSY---QIVDALIWLGIRDMINDFRKKRLNLRRVTY-LSGSYSSPLDV 326 (568)
Q Consensus 267 --~~--------------p~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~in~~r~~~l~l~~~~~-~~~~~~~~~~~ 326 (568)
.+ +.++ .++.-...+... .+.+.. ......+++.++. ...... +.+.+ .++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~~~~-~vPg~p~l~~~dlp~~~~~~~-~~~~~~~~~~~~~----~~~a~gvlvNTf---~eL 216 (470)
T PLN03015 146 MVYLPVLDTVVEGEYVDIKEPL-KIPGCKPVGPKELMETMLDRS-DQQYKECVRSGLE----VPMSDGVLVNTW---EEL 216 (470)
T ss_pred HHhhhhhhcccccccCCCCCee-eCCCCCCCChHHCCHhhcCCC-cHHHHHHHHHHHh----cccCCEEEEech---HHH
Confidence 00 0000 001000000000 000000 0001111111111 000000 00000 000
Q ss_pred CeeeecCCCCCCC---CCCCCCCceEecceeccCCCCCCCChhhHHhhhcCC--CcEEEeCCCCCCCChHHHHHHHHHHH
Q 008369 327 PYAYIWSPHLVPK---PKDWGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGE--KPIYIGFGSLPVEEPEKMTEIIVKAL 401 (568)
Q Consensus 327 ~~~~~~sp~l~p~---p~~~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~--p~VyVsfGS~~~~~~~~l~~~i~~al 401 (568)
...++ ..+... .+...+++..|||+...... ...++++.+||++++ .+|||+|||......+++.++ +.+|
T Consensus 217 E~~~~--~~l~~~~~~~~~~~~~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~el-a~gl 292 (470)
T PLN03015 217 QGNTL--AALREDMELNRVMKVPVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVEL-AWGL 292 (470)
T ss_pred hHHHH--HHHHhhcccccccCCceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHH-HHHH
Confidence 00000 000000 00012458999999743211 122347999999875 499999999988888877775 9999
Q ss_pred HHcCceEEEEcCCCC---------CCCCC-CCCce---------EEEcCCCChhhhh--ccccEEEEeCChhHHHHHHHh
Q 008369 402 EITGHRGIINKGWGG---------LGNLA-ESKDF---------VYLLDNCPHDWLF--SRCLAVVHHGGAGTTAAGLKA 460 (568)
Q Consensus 402 ~~~~~~~Iv~~g~~~---------~~~l~-~~~~n---------v~~~~~vP~~~ll--~~~~~~I~HGG~gT~~EaL~~ 460 (568)
+.++++|||+..... .+... .+|+| +.+.+|+||.++| +++.+|||||||||++|++++
T Consensus 293 ~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~ 372 (470)
T PLN03015 293 ELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTK 372 (470)
T ss_pred HhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHc
Confidence 999999999863210 01111 24445 5677999999998 568899999999999999999
Q ss_pred CCCEEeecCCCChhHHHHHH-HHcCCCCCCCC----CCCCCHHHHHHHHHHhcC------HHHHHHHHHHHHHhhc---C
Q 008369 461 ACPTTIVPFFGDQPFWGERV-HARGLGPAPIP----VEEFSLDKLVDAIRFMLD------PKVKEHAVELAKAMEN---E 526 (568)
Q Consensus 461 GvP~vivP~~~DQ~~na~~v-~~~G~G~~~i~----~~~lt~e~L~~aI~~lLd------~~~r~~a~~la~~~~~---~ 526 (568)
|||+|++|+++||+.||+++ +.+|+|+ .+. ...++.++++++|+++|+ .++|+||++++++.++ +
T Consensus 373 GvP~v~~P~~~DQ~~na~~~~~~~gvg~-~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~e 451 (470)
T PLN03015 373 GVPIVAWPLYAEQWMNATLLTEEIGVAV-RTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSH 451 (470)
T ss_pred CCCEEecccccchHHHHHHHHHHhCeeE-EecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999 7899998 563 235899999999999993 4789999999887664 4
Q ss_pred Cc-HHHHHHHHHHhC
Q 008369 527 DG-VTGAVKAFYKHF 540 (568)
Q Consensus 527 ~g-~~~av~~i~~~l 540 (568)
+| ..+.++.+.+.+
T Consensus 452 GGSS~~nl~~~~~~~ 466 (470)
T PLN03015 452 GGSSYNSLFEWAKRC 466 (470)
T ss_pred CCcHHHHHHHHHHhc
Confidence 55 466777776654
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1e-32 Score=301.69 Aligned_cols=412 Identities=20% Similarity=0.223 Sum_probs=243.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc-CCcee-eccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG-AGLEF-FPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~-~Gl~f-~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
..++++++.+++||++|+..+|+.|+++||+||+++.......... ..... ..+...... +.... ...+.....
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFE---FLTIP-DGLPEGWED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHH---hhhhh-hhhccchHH
Confidence 4567788888999999999999999999999999987654333222 11100 001111000 00000 111111110
Q ss_pred hh-HHHHHHHHHHHHHhhhcCCCCCC--CCCCCCCcEEEeCCCcccHHHHHHHcC-CCEEEEeccCCCC-CC-------C
Q 008369 200 IP-IQRNQLKEIIYSLLPACKDPDPD--TMVPFKPDAIIANPPAYGHTHVAESLK-VPLHIIFTMPWTP-TS-------E 267 (568)
Q Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pDlVI~d~~~~~~~~~A~~lg-IP~v~~~t~p~~~-~~-------~ 267 (568)
.. ........+...+.....+.... .....++|++|+|.+..+...+|...+ ||...+.+.++.. .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~~ 160 (496)
T KOG1192|consen 81 DDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLSY 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCcccc
Confidence 00 00000112222222111111100 111223999999997655555665554 8877776655432 11 2
Q ss_pred CCCCcccCC-Cccch--hhHHHHHHHHHHHHHHH-----HHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCC
Q 008369 268 FPHPLSRVK-QPVAY--RLSYQIVDALIWLGIRD-----MINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPK 339 (568)
Q Consensus 268 ~p~p~~~~~-~~~~~--~~~~~~~~~~~~~~~~~-----~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~ 339 (568)
.|.+..... ..+.. +..+ +........... ..+.... ..................+..+.++.+..+...
T Consensus 161 ~p~~~~~~~~~~~~~~~~~~n-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 161 VPSPFSLSSGDDMSFPERVPN-LIKKDLPSFLFSLSDDRKQDKISK-ELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cCcccCccccccCcHHHHHHH-HHHHHHHHHHHHHhhhHHHHHHHH-HhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 222222111 11221 1111 111111111111 1112221 122111111111111122334556666666555
Q ss_pred -CCCCCCCceEecceeccCCCCCC-CChhhHHhhhcC-CCcEEEeCCCCCC--CChHHHHHHHHHHHHHc-CceEEEEcC
Q 008369 340 -PKDWGPKIDVVGFCFLDLASTYE-PPDSLVKWLEDG-EKPIYIGFGSLPV--EEPEKMTEIIVKALEIT-GHRGIINKG 413 (568)
Q Consensus 340 -p~~~~~~v~~vGpl~~~~~~~~~-~~~~l~~~L~~~-~p~VyVsfGS~~~--~~~~~l~~~i~~al~~~-~~~~Iv~~g 413 (568)
++.+.+++..+||+......... .+.++.++++.. ..+|||||||++. ..+++....++.+++.. ++.|+|...
T Consensus 239 ~~~~~~~~v~~IG~l~~~~~~~~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~ 318 (496)
T KOG1192|consen 239 EPRPLLPKVIPIGPLHVKDSKQKSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYR 318 (496)
T ss_pred CCCCCCCCceEECcEEecCccccccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEec
Confidence 55568999999999887433222 344555555553 4699999999974 45666667679999999 888888764
Q ss_pred CCCC----CCCCC-CCceEEEcCCCChhhhh---ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCC
Q 008369 414 WGGL----GNLAE-SKDFVYLLDNCPHDWLF---SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGL 485 (568)
Q Consensus 414 ~~~~----~~l~~-~~~nv~~~~~vP~~~ll---~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~ 485 (568)
.... ..+.+ .++||...+|+||.++| +++++||||||+|||+|++++|||+|++|+|+||+.||+++++.|.
T Consensus 319 ~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~ 398 (496)
T KOG1192|consen 319 PDDSIYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGG 398 (496)
T ss_pred CCcchhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCC
Confidence 3321 22222 25689999999999963 7799999999999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcH-HHHHHHHHHhC
Q 008369 486 GPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENEDGV-TGAVKAFYKHF 540 (568)
Q Consensus 486 G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~-~~av~~i~~~l 540 (568)
|. .+...+++.+++.+++.+++ +++|.++++++++.++++... +.++.++|-..
T Consensus 399 ~~-v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~l~~~~~~~p~~~~~~~~~~e~~~ 454 (496)
T KOG1192|consen 399 GG-VLDKRDLVSEELLEAIKEILENEEYKEAAKRLSEILRDQPISPELAVKWVEFVA 454 (496)
T ss_pred EE-EEehhhcCcHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 87 56666677767999999999 999999999999999876433 66665555333
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=2.6e-28 Score=254.23 Aligned_cols=336 Identities=14% Similarity=0.138 Sum_probs=215.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--chhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN--FKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~--~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
|.||+|...|+.||++|.+++|++|.++||+|.|++... ..+.+...|++++.++.. + +.. ...
T Consensus 1 ~~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~------------~-l~~-~~~ 66 (352)
T PRK12446 1 MKKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSG------------K-LRR-YFD 66 (352)
T ss_pred CCeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEecc------------C-cCC-Cch
Confidence 347888899999999999999999999999999998654 335566778888877531 1 110 001
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeC--CCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCC
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIAN--PPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQ 277 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d--~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~ 277 (568)
+. .......++...+.... .+++++||+||+. ..++....+|..+++|+++.-... ++
T Consensus 67 ~~-~~~~~~~~~~~~~~~~~-----i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~--------~~------ 126 (352)
T PRK12446 67 LK-NIKDPFLVMKGVMDAYV-----RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM--------TP------ 126 (352)
T ss_pred HH-HHHHHHHHHHHHHHHHH-----HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------Cc------
Confidence 11 11222222333332221 4567899999985 344457899999999998743311 00
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCC-CCceEecceecc
Q 008369 278 PVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWG-PKIDVVGFCFLD 356 (568)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~-~~v~~vGpl~~~ 356 (568)
...|++-.+-. ..+ ...|.+. ...++ .++.++|+..++
T Consensus 127 --------------------g~~nr~~~~~a---------------~~v--~~~f~~~----~~~~~~~k~~~tG~Pvr~ 165 (352)
T PRK12446 127 --------------------GLANKIALRFA---------------SKI--FVTFEEA----AKHLPKEKVIYTGSPVRE 165 (352)
T ss_pred --------------------cHHHHHHHHhh---------------CEE--EEEccch----hhhCCCCCeEEECCcCCc
Confidence 01111111000 000 0111110 00111 468899987654
Q ss_pred CCCCCCCChhhH-Hh-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCC-
Q 008369 357 LASTYEPPDSLV-KW-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNC- 433 (568)
Q Consensus 357 ~~~~~~~~~~l~-~~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~v- 433 (568)
.... ...+... .+ ++.++++|+|..||......+++...++..+.. ++++++.+|..+.+.......++.+.+|+
T Consensus 166 ~~~~-~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~ 243 (352)
T PRK12446 166 EVLK-GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGNLDDSLQNKEGYRQFEYVH 243 (352)
T ss_pred cccc-ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCchHHHHHhhcCCcEEecchh
Confidence 3211 1111211 11 344567999999999865555554444444432 58888888865432211111355667887
Q ss_pred C-hhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCC-----CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 008369 434 P-HDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFF-----GDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFM 507 (568)
Q Consensus 434 P-~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~-----~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~l 507 (568)
+ ..+++..||++|||||++|++|++++|+|+|++|+. +||..||+.+++.|+|+ .+..++++++.|.++|.++
T Consensus 244 ~~m~~~~~~adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~-~l~~~~~~~~~l~~~l~~l 322 (352)
T PRK12446 244 GELPDILAITDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYAS-VLYEEDVTVNSLIKHVEEL 322 (352)
T ss_pred hhHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEE-EcchhcCCHHHHHHHHHHH
Confidence 4 556789999999999999999999999999999985 58999999999999998 7888899999999999999
Q ss_pred c-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 508 L-DPKVKEHAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 508 L-d~~~r~~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
+ |++.++ +..+.+...+++++.++.+++
T Consensus 323 l~~~~~~~---~~~~~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 323 SHNNEKYK---TALKKYNGKEAIQTIIDHISE 351 (352)
T ss_pred HcCHHHHH---HHHHHcCCCCHHHHHHHHHHh
Confidence 9 764432 233445566777777777653
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.2e-24 Score=224.75 Aligned_cols=341 Identities=21% Similarity=0.185 Sum_probs=223.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCC-eEEEEeCCC-c-hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGH-RVRLATHAN-F-KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH-~V~~~t~~~-~-~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
|+|++...|+.||++|.++|+++|.++|+ +|.++.+.. . ...+...++++..++... ..... .
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~-------------~~~~~-~ 66 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGG-------------LRRKG-S 66 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEeccc-------------ccccC-c
Confidence 57889999999999999999999999999 587775443 2 234555678887775421 11110 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe--CCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCC
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA--NPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQ 277 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~--d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~ 277 (568)
.. ..+.....+.....+. ..+++++||+||. .+.+.....+|..+|||+++--+.. .|+
T Consensus 67 ~~-~~~~~~~~~~~~~~a~-----~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~------~~G------- 127 (357)
T COG0707 67 LK-LLKAPFKLLKGVLQAR-----KILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNA------VPG------- 127 (357)
T ss_pred HH-HHHHHHHHHHHHHHHH-----HHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCC------Ccc-------
Confidence 11 1111112222221111 1455779999999 4566678899999999998854321 010
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccC
Q 008369 278 PVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDL 357 (568)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~ 357 (568)
..|++..+.. ..+...+.-.....+ ..+++++|-..++.
T Consensus 128 ---------------------~ank~~~~~a---------------~~V~~~f~~~~~~~~-----~~~~~~tG~Pvr~~ 166 (357)
T COG0707 128 ---------------------LANKILSKFA---------------KKVASAFPKLEAGVK-----PENVVVTGIPVRPE 166 (357)
T ss_pred ---------------------hhHHHhHHhh---------------ceeeeccccccccCC-----CCceEEecCcccHH
Confidence 1111111000 000000000011111 13578888544322
Q ss_pred CCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCC-C-Cce-EEEcCCCC
Q 008369 358 ASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAE-S-KDF-VYLLDNCP 434 (568)
Q Consensus 358 ~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~-~-~~n-v~~~~~vP 434 (568)
-.. .+..........++++|+|..||.....-++++..++..+.+ ++.+++.+|......... . ..+ +.+.+|..
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~ 244 (357)
T COG0707 167 FEE-LPAAEVRKDGRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKNDLEELKSAYNELGVVRVLPFID 244 (357)
T ss_pred hhc-cchhhhhhhccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHh
Confidence 211 122222211112577999999998765544444444444444 578888887665322211 1 112 88888887
Q ss_pred h-hhhhccccEEEEeCChhHHHHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 008369 435 H-DWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFF----GDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML- 508 (568)
Q Consensus 435 ~-~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~----~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL- 508 (568)
+ ..++..+|++||++|++|+.|++++|+|+|++|+. +||..||+.+++.|+|. .++..++|+++|.+.|.+++
T Consensus 245 dm~~~~~~ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~-~i~~~~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 245 DMAALLAAADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAAL-VIRQSELTPEKLAELILRLLS 323 (357)
T ss_pred hHHHHHHhccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEE-EeccccCCHHHHHHHHHHHhc
Confidence 5 45689999999999999999999999999999976 38999999999999999 89999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 509 DPKVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 509 d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+++-.+++++.++.+...+..++.++.+++..
T Consensus 324 ~~~~l~~m~~~a~~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 324 NPEKLKAMAENAKKLGKPDAAERIADLLLALA 355 (357)
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 88888888888999989999999988887754
No 30
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=4.5e-25 Score=227.41 Aligned_cols=311 Identities=17% Similarity=0.216 Sum_probs=192.1
Q ss_pred eEEEEEecC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChh
Q 008369 123 LHIVMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIP 201 (568)
Q Consensus 123 m~Ili~~~g-s~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (568)
|||+|.+.+ +.||+.++++||++| +||+|+|++.....++++.. +....+++.... .. .+.+ +..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~-~~~~-----~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKPR-FPVREIPGLGPI-----QE-NGRL-----DRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhccc-cCEEEccCceEe-----cc-CCcc-----chH
Confidence 899999888 889999999999999 59999999988777777665 566666432100 00 0000 000
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCCccch
Q 008369 202 IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPVAY 281 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~~~~~ 281 (568)
........+.... ......+.+.++.++||+||+|...+ +..+|+..|||++.+....+........+..
T Consensus 67 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~pDlVIsD~~~~-~~~aa~~~giP~i~i~~~~~~~~~~~~~~~~-------- 136 (318)
T PF13528_consen 67 KTVRNNIRWLARL-ARRIRREIRWLREFRPDLVISDFYPL-AALAARRAGIPVIVISNQYWFLHPNFWLPWD-------- 136 (318)
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHhcCCCEEEEcChHH-HHHHHHhcCCCEEEEEehHHcccccCCcchh--------
Confidence 0000000000000 00000111234567899999996555 4688999999999887766543211100000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccCCCCC
Q 008369 282 RLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDLASTY 361 (568)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~~~~~ 361 (568)
......+.++.... -..+. +..+...+. .+..-..++.++||+..+.....
T Consensus 137 ------------~~~~~~~~~~~~~~-~~~~~-----------~~~l~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~ 187 (318)
T PF13528_consen 137 ------------QDFGRLIERYIDRY-HFPPA-----------DRRLALSFY-----PPLPPFFRVPFVGPIIRPEIREL 187 (318)
T ss_pred ------------hhHHHHHHHhhhhc-cCCcc-----------cceecCCcc-----ccccccccccccCchhccccccc
Confidence 00111112222111 00000 000000000 01111234667888765332111
Q ss_pred CCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcC-ceEEEEcCCCCCCCCCCCCceEEEcCCC--Chhhh
Q 008369 362 EPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITG-HRGIINKGWGGLGNLAESKDFVYLLDNC--PHDWL 438 (568)
Q Consensus 362 ~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~-~~~Iv~~g~~~~~~l~~~~~nv~~~~~v--P~~~l 438 (568)
. ...++.|+|++|+.... .++++++..+ +++++. |... .+..++|+.+.++. ...++
T Consensus 188 ~---------~~~~~~iLv~~gg~~~~-------~~~~~l~~~~~~~~~v~-g~~~---~~~~~~ni~~~~~~~~~~~~~ 247 (318)
T PF13528_consen 188 P---------PEDEPKILVYFGGGGPG-------DLIEALKALPDYQFIVF-GPNA---ADPRPGNIHVRPFSTPDFAEL 247 (318)
T ss_pred C---------CCCCCEEEEEeCCCcHH-------HHHHHHHhCCCCeEEEE-cCCc---ccccCCCEEEeecChHHHHHH
Confidence 1 12456789999886532 3467777766 677666 4442 12237899999986 45667
Q ss_pred hccccEEEEeCChhHHHHHHHhCCCEEeecC--CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 008369 439 FSRCLAVVHHGGAGTTAAGLKAACPTTIVPF--FGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFM 507 (568)
Q Consensus 439 l~~~~~~I~HGG~gT~~EaL~~GvP~vivP~--~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~l 507 (568)
|..||++|+|||+||++|++++|+|+|++|. +.||..||+.+++.|+|. .++.++++++.|+++|+++
T Consensus 248 m~~ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~-~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 248 MAAADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGI-VLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHhCCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeE-EcccccCCHHHHHHHHhcC
Confidence 8999999999999999999999999999999 789999999999999999 7888999999999999864
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.91 E-value=1.2e-22 Score=209.87 Aligned_cols=302 Identities=20% Similarity=0.269 Sum_probs=176.2
Q ss_pred EEEEEecCCC-CChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCce-eeccCCChHHHHHHHhhcCCCCCCCCCChh
Q 008369 124 HIVMLIVGTR-GDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLE-FFPLGGDPKILAGYMVKNKGFLPSGPSEIP 201 (568)
Q Consensus 124 ~Ili~~~gs~-GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~-f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (568)
||++.+.|.. ||+.|.++||++|++ ||+|+|++......++...|++ +..+++.. +. .+++..+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~-----~~~~~~~~- 67 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISKYGFKVFETFPGIK------LK-----GEDGKVNI- 67 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhhhcCcceeccCCce------Ee-----ecCCcCcH-
Confidence 6899888866 999999999999999 9999999988877888888876 43333211 00 00000000
Q ss_pred HHHHHHH---HH-HHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCC
Q 008369 202 IQRNQLK---EI-IYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQ 277 (568)
Q Consensus 202 ~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~ 277 (568)
.+.+. .+ ...+.. ..+.++.++||+||+| ..+.+..+|+.+|||++.+..+... .+|...
T Consensus 68 --~~~l~~~~~~~~~~~~~-----~~~~l~~~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~---~~~~~~----- 131 (321)
T TIGR00661 68 --VKTLRNKEYSPKKAIRR-----EINIIREYNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT---RYPLKT----- 131 (321)
T ss_pred --HHHHHhhccccHHHHHH-----HHHHHHhcCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh---cCCccc-----
Confidence 11111 01 001110 1124456799999999 5565688999999999977653211 111110
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHH--hhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCce-Eeccee
Q 008369 278 PVAYRLSYQIVDALIWLGIRDMINDFRK--KRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKID-VVGFCF 354 (568)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~in~~r~--~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~-~vGpl~ 354 (568)
....|. .......+-. +.++.+.. ..+ . ...| +.+. ..+|..
T Consensus 132 -----------~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------~~~--~----~~~p------~~~~~~~~~~~ 176 (321)
T TIGR00661 132 -----------DLIVYP-TMAALRIFNERCERFIVPDY-----------PFP--Y----TICP------KIIKNMEGPLI 176 (321)
T ss_pred -----------chhHHH-HHHHHHHhccccceEeeecC-----------CCC--C----CCCc------cccccCCCccc
Confidence 000110 0011111110 00000000 000 0 0000 0000 001111
Q ss_pred ccCCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCc-eEEEEcCCCCCCCCCCCCceEEEcCCC
Q 008369 355 LDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGH-RGIINKGWGGLGNLAESKDFVYLLDNC 433 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~-~~Iv~~g~~~~~~l~~~~~nv~~~~~v 433 (568)
..+..++.....+.|+|.+||.. . +.++++++..+. .+++. +.... ....++|+.+.+|.
T Consensus 177 ---------~~~~~~~~~~~~~~iLv~~g~~~---~----~~l~~~l~~~~~~~~i~~-~~~~~--~~~~~~~v~~~~~~ 237 (321)
T TIGR00661 177 ---------RYDVDDVDNYGEDYILVYIGFEY---R----YKILELLGKIANVKFVCY-SYEVA--KNSYNENVEIRRIT 237 (321)
T ss_pred ---------chhhhccccCCCCcEEEECCcCC---H----HHHHHHHHhCCCeEEEEe-CCCCC--ccccCCCEEEEECC
Confidence 11122233334567888888843 2 234677776654 44443 22211 12346899999999
Q ss_pred C--hhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCC--ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-
Q 008369 434 P--HDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFG--DQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML- 508 (568)
Q Consensus 434 P--~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~--DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL- 508 (568)
| ..++|+.||+||||||++|++|++++|+|++++|..+ ||..||+.+++.|+|+ .++..++ ++.+++..++
T Consensus 238 ~~~~~~~l~~ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~-~l~~~~~---~~~~~~~~~~~ 313 (321)
T TIGR00661 238 TDNFKELIKNAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGI-ALEYKEL---RLLEAILDIRN 313 (321)
T ss_pred hHHHHHHHHhCCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEE-EcChhhH---HHHHHHHhccc
Confidence 7 4456799999999999999999999999999999965 8999999999999998 6776655 5566666666
Q ss_pred CHHH
Q 008369 509 DPKV 512 (568)
Q Consensus 509 d~~~ 512 (568)
|+.|
T Consensus 314 ~~~~ 317 (321)
T TIGR00661 314 MKRY 317 (321)
T ss_pred cccc
Confidence 5554
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.88 E-value=1.4e-20 Score=197.20 Aligned_cols=340 Identities=20% Similarity=0.209 Sum_probs=210.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF--KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
||||+|.+.|..||...++.|+++|.++||+|++++.... ...++..|++++.++... . ... ..
T Consensus 1 ~~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~------------~-~~~-~~ 66 (357)
T PRK00726 1 MKKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGG------------L-RRK-GS 66 (357)
T ss_pred CcEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccC------------c-CCC-Ch
Confidence 6999999999999999999999999999999999987552 334445687777664210 0 000 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCC--CcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCC
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANP--PAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQ 277 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~--~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~ 277 (568)
.... .....++....... +.++..+||+|++.. ..+.+..+++..++|++.... .+. +
T Consensus 67 ~~~l-~~~~~~~~~~~~~~-----~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~-----~-------- 126 (357)
T PRK00726 67 LANL-KAPFKLLKGVLQAR-----KILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQ-NAV-----P-------- 126 (357)
T ss_pred HHHH-HHHHHHHHHHHHHH-----HHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcC-CCC-----c--------
Confidence 1100 01111111111111 123455899999974 244466778889999985321 100 0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccC
Q 008369 278 PVAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDL 357 (568)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~ 357 (568)
+ ..+.+..... . .+ +.... .. + .. .-+.+++++|......
T Consensus 127 --~------~~~r~~~~~~-------d--~i----i~~~~-------~~---~-~~--------~~~~~i~vi~n~v~~~ 166 (357)
T PRK00726 127 --G------LANKLLARFA-------K--KV----ATAFP-------GA---F-PE--------FFKPKAVVTGNPVREE 166 (357)
T ss_pred --c------HHHHHHHHHh-------c--hh----eECch-------hh---h-hc--------cCCCCEEEECCCCChH
Confidence 0 0000000000 0 00 00000 00 0 00 1125577777543321
Q ss_pred CCCCCCChhhHHh-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCc--eEEEEcCCCCCCCCC---CCCceEEEcC
Q 008369 358 ASTYEPPDSLVKW-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGH--RGIINKGWGGLGNLA---ESKDFVYLLD 431 (568)
Q Consensus 358 ~~~~~~~~~l~~~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~--~~Iv~~g~~~~~~l~---~~~~nv~~~~ 431 (568)
. +..+..-..+ +..+.++|++..|+... +.+...+.+|+..... .+++..|.+..+.+. ...-++.+.+
T Consensus 167 ~--~~~~~~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g 241 (357)
T PRK00726 167 I--LALAAPPARLAGREGKPTLLVVGGSQGA---RVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYAAGINAEVVP 241 (357)
T ss_pred h--hcccchhhhccCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhhcCCcEEEee
Confidence 1 1111110111 11234566666666422 2233443466554432 445556655322211 1222488899
Q ss_pred CC-ChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecC----CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHH
Q 008369 432 NC-PHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPF----FGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRF 506 (568)
Q Consensus 432 ~v-P~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~----~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~ 506 (568)
|+ +..++++.+|++|+|+|.+|++|++++|+|+|++|. .++|..|+..+.+.|.|. .++.++++++.|+++|.+
T Consensus 242 ~~~~~~~~~~~~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~-~~~~~~~~~~~l~~~i~~ 320 (357)
T PRK00726 242 FIDDMAAAYAAADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAAL-LIPQSDLTPEKLAEKLLE 320 (357)
T ss_pred hHhhHHHHHHhCCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEE-EEEcccCCHHHHHHHHHH
Confidence 98 456789999999999999999999999999999997 478999999999999998 788888899999999999
Q ss_pred hc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 507 ML-DPKVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 507 lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
++ |++.++++.+.++++..+.+.+++++.+++++.
T Consensus 321 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 321 LLSDPERLEAMAEAARALGKPDAAERLADLIEELAR 356 (357)
T ss_pred HHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhh
Confidence 99 899999999999998888999999999988764
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.83 E-value=9e-19 Score=182.65 Aligned_cols=331 Identities=19% Similarity=0.188 Sum_probs=194.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChh
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF--KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIP 201 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (568)
+|+|...++.||+...+.|+++|.++||+|++++.... .......|++++.++... . . ....+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-~-~~~~~~ 66 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGG------------L-R-RKGSLK 66 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecC------------c-C-CCChHH
Confidence 58999999999999999999999999999999986532 222333466666554210 0 0 000011
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCC--CcccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCCcc
Q 008369 202 IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANP--PAYGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQPV 279 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~--~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~~~ 279 (568)
... ....++....... ..+++++||+|++.. ..+.+..+|...|+|++......+ +
T Consensus 67 ~~~-~~~~~~~~~~~~~-----~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~------~---------- 124 (350)
T cd03785 67 KLK-APFKLLKGVLQAR-----KILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV------P---------- 124 (350)
T ss_pred HHH-HHHHHHHHHHHHH-----HHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC------c----------
Confidence 010 1111111110000 122345899999864 344567788999999975321100 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccCCC
Q 008369 280 AYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDLAS 359 (568)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~~~ 359 (568)
+ ..+.+-.... + ...+.++..... -.+.++.++|.......
T Consensus 125 ~------------------~~~~~~~~~~--~----------------~vi~~s~~~~~~--~~~~~~~~i~n~v~~~~- 165 (350)
T cd03785 125 G------------------LANRLLARFA--D----------------RVALSFPETAKY--FPKDKAVVTGNPVREEI- 165 (350)
T ss_pred c------------------HHHHHHHHhh--C----------------EEEEcchhhhhc--CCCCcEEEECCCCchHH-
Confidence 0 0001100000 0 000111111000 01245666665332110
Q ss_pred CCCCChhhHHh-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHH---cCceEEEEcCCCCCCCC----CCCCceEEEcC
Q 008369 360 TYEPPDSLVKW-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEI---TGHRGIINKGWGGLGNL----AESKDFVYLLD 431 (568)
Q Consensus 360 ~~~~~~~l~~~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~---~~~~~Iv~~g~~~~~~l----~~~~~nv~~~~ 431 (568)
+........+ ++.++++|++..|+... ..+.+.+.++++. .+..+++..|.+..+.+ .+..+|+.+.+
T Consensus 166 -~~~~~~~~~~~~~~~~~~i~~~~g~~~~---~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g 241 (350)
T cd03785 166 -LALDRERARLGLRPGKPTLLVFGGSQGA---RAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFP 241 (350)
T ss_pred -hhhhhhHHhcCCCCCCeEEEEECCcHhH---HHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEee
Confidence 1111111122 22234456666666532 2233333344433 34555555555432222 12246899999
Q ss_pred CC-ChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecC----CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHH
Q 008369 432 NC-PHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPF----FGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRF 506 (568)
Q Consensus 432 ~v-P~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~----~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~ 506 (568)
++ ....+|..||++|+++|.+|+.||+++|+|+|++|. .++|..|+..+.+.|.|. .++..+.+.++|.++|.+
T Consensus 242 ~~~~~~~~l~~ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~-~v~~~~~~~~~l~~~i~~ 320 (350)
T cd03785 242 FIDDMAAAYAAADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAV-LIPQEELTPERLAAALLE 320 (350)
T ss_pred hhhhHHHHHHhcCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEE-EEecCCCCHHHHHHHHHH
Confidence 98 456678999999999999999999999999999986 367999999999999998 677666789999999999
Q ss_pred hc-CHHHHHHHHHHHHHhhcCCcHHHHHH
Q 008369 507 ML-DPKVKEHAVELAKAMENEDGVTGAVK 534 (568)
Q Consensus 507 lL-d~~~r~~a~~la~~~~~~~g~~~av~ 534 (568)
++ |++.++++.+-++.....++.++.++
T Consensus 321 ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 321 LLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 99 88888888888877777677777665
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.81 E-value=3.6e-18 Score=178.01 Aligned_cols=329 Identities=21% Similarity=0.244 Sum_probs=185.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCCh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF--KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEI 200 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (568)
|||+|++.+..||+...+.|+++|.++||+|++++.+.. .++.+..|+++..++... .. .. ..
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~-------------~~-~~-~~ 65 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGG-------------LR-RK-GS 65 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccC-------------cC-CC-Ch
Confidence 699999999999999888999999999999999987442 133344677776664321 00 00 01
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCc--ccHHHHHHHcCCCEEEEeccCCCCCCCCCCCcccCCCc
Q 008369 201 PIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPA--YGHTHVAESLKVPLHIIFTMPWTPTSEFPHPLSRVKQP 278 (568)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~--~~~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~~~~~~ 278 (568)
..........+...+... +.+++++||+|++.... +.+..++..+++|++.... .+. +
T Consensus 66 ~~~l~~~~~~~~~~~~l~-----~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~-~~~-----~--------- 125 (348)
T TIGR01133 66 FRLIKTPLKLLKAVFQAR-----RILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQ-NAV-----P--------- 125 (348)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEEECC-CCC-----c---------
Confidence 001111111111111110 12345689999997432 3355678889999974211 110 0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccCC
Q 008369 279 VAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDLA 358 (568)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~~ 358 (568)
. ..+ +|-.+... . .+..++..... . ...++|.......
T Consensus 126 --~-----~~~------------~~~~~~~d--~----------------ii~~~~~~~~~---~--~~~~i~n~v~~~~ 163 (348)
T TIGR01133 126 --G-----LTN------------KLLSRFAK--K----------------VLISFPGAKDH---F--EAVLVGNPVRQEI 163 (348)
T ss_pred --c-----HHH------------HHHHHHhC--e----------------eEECchhHhhc---C--CceEEcCCcCHHH
Confidence 0 000 11100000 0 00001100000 0 1123332211000
Q ss_pred CCCCCChhhHHh-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHH---HHcCceEEEEcCCCCCCCCC----CCC-ceE-E
Q 008369 359 STYEPPDSLVKW-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKAL---EITGHRGIINKGWGGLGNLA----ESK-DFV-Y 428 (568)
Q Consensus 359 ~~~~~~~~l~~~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al---~~~~~~~Iv~~g~~~~~~l~----~~~-~nv-~ 428 (568)
+.++..-..+ +..++++|.+..|+... +.+.+.+.+++ ...+.++++..|+...+.+. +.+ .++ .
T Consensus 164 --~~~~~~~~~~~~~~~~~~i~~~gg~~~~---~~~~~~l~~a~~~l~~~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~ 238 (348)
T TIGR01133 164 --RSLPVPRERFGLREGKPTILVLGGSQGA---KILNELVPKALAKLAEKGIQIVHQTGKNDLEKVKNVYQELGIEAIVT 238 (348)
T ss_pred --hcccchhhhcCCCCCCeEEEEECCchhH---HHHHHHHHHHHHHHhhcCcEEEEECCcchHHHHHHHHhhCCceEEec
Confidence 0000000111 12233445444455432 22233333444 33356666655554332221 111 122 2
Q ss_pred EcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCC---CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHH
Q 008369 429 LLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFF---GDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIR 505 (568)
Q Consensus 429 ~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~---~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~ 505 (568)
+. +-....+++.||++|+++|.+|+.||+++|+|+|++|.. ++|..|+..+.+.|.|. .++.++.+++.|+++|+
T Consensus 239 ~~-~~~~~~~l~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~-~~~~~~~~~~~l~~~i~ 316 (348)
T TIGR01133 239 FI-DENMAAAYAAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGL-VIRQKELLPEKLLEALL 316 (348)
T ss_pred Cc-ccCHHHHHHhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEE-EEecccCCHHHHHHHHH
Confidence 22 224566789999999999988999999999999999874 57888999999999998 78777788999999999
Q ss_pred Hhc-CHHHHHHHHHHHHHhhcCCcHHHHHHH
Q 008369 506 FML-DPKVKEHAVELAKAMENEDGVTGAVKA 535 (568)
Q Consensus 506 ~lL-d~~~r~~a~~la~~~~~~~g~~~av~~ 535 (568)
+++ |++.++++.+.++.+..++..+++++.
T Consensus 317 ~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 347 (348)
T TIGR01133 317 KLLLDPANLEAMAEAARKLAKPDAAKRIAEL 347 (348)
T ss_pred HHHcCHHHHHHHHHHHHhcCCccHHHHHHhh
Confidence 999 999888888888777777777777664
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.77 E-value=1.2e-17 Score=176.60 Aligned_cols=338 Identities=17% Similarity=0.144 Sum_probs=188.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChhH
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPI 202 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (568)
.||+|...++.||+.|. +|+++|+++|++|.|++... +.+++.|++- ..+...+.- .|+ ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg--~~m~~~g~~~---~~~~~~l~v-----~G~--------~~ 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG--PRMAAEGCEV---LYSMEELSV-----MGL--------RE 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc--HHHHhCcCcc---ccChHHhhh-----ccH--------HH
Confidence 57999999999999999 99999999999999997542 2455556432 111111100 010 00
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe-CCCcccHHH--HHHHcCCCEEEEec-cCCCCCCCCCCCcccCCCc
Q 008369 203 QRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA-NPPAYGHTH--VAESLKVPLHIIFT-MPWTPTSEFPHPLSRVKQP 278 (568)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~-d~~~~~~~~--~A~~lgIP~v~~~t-~p~~~~~~~p~p~~~~~~~ 278 (568)
..+.+..++....... +.+++++||+||. |..++.... +|+.+|||++...+ .-|.
T Consensus 67 ~l~~~~~~~~~~~~~~-----~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P~~wa--------------- 126 (385)
T TIGR00215 67 VLGRLGRLLKIRKEVV-----QLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISPQVWA--------------- 126 (385)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCCcHhh---------------
Confidence 1112222222221111 1345679999987 655554334 78999999986431 1111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCCceEecceeccCC
Q 008369 279 VAYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPKIDVVGFCFLDLA 358 (568)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~v~~vGpl~~~~~ 358 (568)
|..- ....+.+ ... .+ ++..|.-...-...+.++.++|....+..
T Consensus 127 --------------w~~~--~~r~l~~-~~d---------------~v---~~~~~~e~~~~~~~g~~~~~vGnPv~~~~ 171 (385)
T TIGR00215 127 --------------WRKW--RAKKIEK-ATD---------------FL---LAILPFEKAFYQKKNVPCRFVGHPLLDAI 171 (385)
T ss_pred --------------cCcc--hHHHHHH-HHh---------------Hh---hccCCCcHHHHHhcCCCEEEECCchhhhc
Confidence 1000 0000110 000 00 00000000000012234567775443322
Q ss_pred CCC-CCChhhHH-h-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCCCC-CCCCC----C--C
Q 008369 359 STY-EPPDSLVK-W-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGWGG-LGNLA----E--S 423 (568)
Q Consensus 359 ~~~-~~~~~l~~-~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~-~~~l~----~--~ 423 (568)
... ....+..+ + ++.+.++|.+..||.... .+.+...++++++.. +.++++..+... ...++ . .
T Consensus 172 ~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~ae-i~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~ 250 (385)
T TIGR00215 172 PLYKPDRKSAREKLGIDHNGETLALLPGSRGSE-VEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGP 250 (385)
T ss_pred cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHH-HHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCC
Confidence 111 11122222 2 334456788888886432 234555556555443 345555433321 11111 1 1
Q ss_pred CceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEee----cCCC---------ChhHHHHHHHHcCCCCCCC
Q 008369 424 KDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIV----PFFG---------DQPFWGERVHARGLGPAPI 490 (568)
Q Consensus 424 ~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~viv----P~~~---------DQ~~na~~v~~~G~G~~~i 490 (568)
...+.+..+ ....++..+|++|+.+|..|+ |++++|+|+|++ |+.. .|..|++.++..++.+ .+
T Consensus 251 ~~~v~~~~~-~~~~~l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~p-el 327 (385)
T TIGR00215 251 DLQLHLIDG-DARKAMFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVP-EL 327 (385)
T ss_pred CCcEEEECc-hHHHHHHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccch-hh
Confidence 234544433 334578999999999999887 999999999999 7642 3888999999999999 67
Q ss_pred CCCCCCHHHHHHHHHHhc-CH----HHHHHH----HHHHHHhhcCCcHHHHHHHHHH
Q 008369 491 PVEEFSLDKLVDAIRFML-DP----KVKEHA----VELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 491 ~~~~lt~e~L~~aI~~lL-d~----~~r~~a----~~la~~~~~~~g~~~av~~i~~ 538 (568)
-.+++|++.|++++.++| |+ +++++. .++.+.+...+..+++++.+.+
T Consensus 328 ~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 328 LQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred cCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 778999999999999999 88 555444 4444444433445788877654
No 36
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.71 E-value=4.4e-16 Score=164.54 Aligned_cols=163 Identities=18% Similarity=0.069 Sum_probs=99.8
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCCCC-CCCC----CCC-CceEEEcCCCChhhhhcccc
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGWGG-LGNL----AES-KDFVYLLDNCPHDWLFSRCL 443 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~-~~~l----~~~-~~nv~~~~~vP~~~ll~~~~ 443 (568)
.++|.+..||.... .+.....++++++.. +.++++..+... .+.+ ... .-++.+... ....++..+|
T Consensus 186 ~~~il~~~gsr~~~-~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~aD 263 (380)
T PRK00025 186 ARVLALLPGSRGQE-IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAMAAAD 263 (380)
T ss_pred CCEEEEECCCCHHH-HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHHHhCC
Confidence 34566666764321 223344445555432 356777654222 1111 111 223444331 2345679999
Q ss_pred EEEEeCChhHHHHHHHhCCCEEeecCCCC--------hhHH-----HHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 008369 444 AVVHHGGAGTTAAGLKAACPTTIVPFFGD--------QPFW-----GERVHARGLGPAPIPVEEFSLDKLVDAIRFML-D 509 (568)
Q Consensus 444 ~~I~HGG~gT~~EaL~~GvP~vivP~~~D--------Q~~n-----a~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d 509 (568)
++|+.+|.+++ |++++|+|+|+.|-.+. |..| ++.+++.+++. .+..+..++++|+++|.+++ |
T Consensus 264 l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 264 AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVP-ELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcch-hhcCCCCCHHHHHHHHHHHhcC
Confidence 99999998887 99999999999954321 2112 23444445555 45567889999999999999 8
Q ss_pred HHHHHHHHHHH----HHhhcCCcHHHHHHHHHHhCCC
Q 008369 510 PKVKEHAVELA----KAMENEDGVTGAVKAFYKHFPG 542 (568)
Q Consensus 510 ~~~r~~a~~la----~~~~~~~g~~~av~~i~~~l~~ 542 (568)
++.++++.+-+ +.+ ..+++++.++.+.+.+..
T Consensus 342 ~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 342 GARRQALLEGFTELHQQL-RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhhh
Confidence 87776555543 444 556678899988887643
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.71 E-value=7.1e-16 Score=163.04 Aligned_cols=160 Identities=14% Similarity=0.109 Sum_probs=120.2
Q ss_pred CCCcEEEeCCCCCCCChHHHHHHHHHHHHHc-CceEEEEcCCCC-C-CCC----CCCCceEEEcCCCChh-hhhccccEE
Q 008369 374 GEKPIYIGFGSLPVEEPEKMTEIIVKALEIT-GHRGIINKGWGG-L-GNL----AESKDFVYLLDNCPHD-WLFSRCLAV 445 (568)
Q Consensus 374 ~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-~~~~Iv~~g~~~-~-~~l----~~~~~nv~~~~~vP~~-~ll~~~~~~ 445 (568)
++++|++..|+..... .+ ..+++++... +.++++..|.++ . +.+ ...++||.+.+|+++. .++..+|++
T Consensus 201 ~~~~il~~~G~~~~~k--~~-~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~~aD~~ 277 (380)
T PRK13609 201 NKKILLIMAGAHGVLG--NV-KELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFRVTSCM 277 (380)
T ss_pred CCcEEEEEcCCCCCCc--CH-HHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHHhccEE
Confidence 4456777778875321 12 3346666544 567777665432 1 111 1234689999999864 678999999
Q ss_pred EEeCChhHHHHHHHhCCCEEee-cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 008369 446 VHHGGAGTTAAGLKAACPTTIV-PFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAM 523 (568)
Q Consensus 446 I~HGG~gT~~EaL~~GvP~viv-P~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~ 523 (568)
|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++.|+|+ .. -+.++|+++|.+++ |++.++++.+-+..+
T Consensus 278 v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~-~~----~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~ 352 (380)
T PRK13609 278 ITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAV-VI----RDDEEVFAKTEALLQDDMKLLQMKEAMKSL 352 (380)
T ss_pred EeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEE-EE----CCHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 9999988999999999999985 77777889999999999987 32 36799999999999 888888887777777
Q ss_pred hcCCcHHHHHHHHHHhCC
Q 008369 524 ENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 524 ~~~~g~~~av~~i~~~l~ 541 (568)
......+..++.+++.+.
T Consensus 353 ~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 353 YLPEPADHIVDDILAENH 370 (380)
T ss_pred CCCchHHHHHHHHHHhhh
Confidence 777888889998887764
No 38
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=154.54 Aligned_cols=353 Identities=20% Similarity=0.243 Sum_probs=207.5
Q ss_pred CCCeEEEEEecC--CCCChHHHHHHHHHHHhC--CCeEEEEeCCC-chhhHhcCCceeeccCCChHHHHHHHhhcC-CCC
Q 008369 120 IPPLHIVMLIVG--TRGDVQPFVAIGKRLQED--GHRVRLATHAN-FKDFVLGAGLEFFPLGGDPKILAGYMVKNK-GFL 193 (568)
Q Consensus 120 ~~~m~Ili~~~g--s~GHv~P~laLA~~L~~r--GH~V~~~t~~~-~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~-~~~ 193 (568)
++++||+|.+.- +-||+.++..+|++|.+. |.+|+++|... ...|--..|+.|+.+|.-. ++. |..
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~--------k~~~G~~ 78 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLI--------KGDNGEY 78 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceE--------ecCCCce
Confidence 466899999987 568999999999999997 99999998654 4455556899999998631 111 211
Q ss_pred CCCCC--ChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHH-----HH--HHHcCCCEEEEeccCCCC
Q 008369 194 PSGPS--EIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHT-----HV--AESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 194 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~-----~~--A~~lgIP~v~~~t~p~~~ 264 (568)
..... .+....++-..++-+ +.+.|+||++|+|.+.++.. .+ -+..+-+++...+ .
T Consensus 79 ~~~d~~~~l~e~~~~Rs~lil~-----------t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr----~ 143 (400)
T COG4671 79 GLVDLDGDLEETKKLRSQLILS-----------TAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLR----S 143 (400)
T ss_pred eeeecCCCHHHHHHHHHHHHHH-----------HHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehH----h
Confidence 11111 111111222222222 23467999999997776610 01 1111211111100 0
Q ss_pred CCCCCCCcccCCCccchhhHHHHHHHHHHH--HHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCC
Q 008369 265 TSEFPHPLSRVKQPVAYRLSYQIVDALIWL--GIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKD 342 (568)
Q Consensus 265 ~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~ 342 (568)
....|+-. .--|. .....++++-..- +..+. ....+... -++.+..
T Consensus 144 i~D~p~~~-----------------~~~w~~~~~~~~I~r~yD~V-------~v~Gd-P~f~d~~~-------~~~~~~~ 191 (400)
T COG4671 144 IRDIPQEL-----------------EADWRRAETVRLINRFYDLV-------LVYGD-PDFYDPLT-------EFPFAPA 191 (400)
T ss_pred hhhchhhh-----------------ccchhhhHHHHHHHHhheEE-------EEecC-ccccChhh-------cCCccHh
Confidence 00000000 00011 1111222222100 00000 00001111 1233444
Q ss_pred CCCCceEecceeccCCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHH-cCce--EEEEcCCCCCCC
Q 008369 343 WGPKIDVVGFCFLDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEI-TGHR--GIINKGWGGLGN 419 (568)
Q Consensus 343 ~~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~-~~~~--~Iv~~g~~~~~~ 419 (568)
...++.++|++-.+.+....++.+ ...+.-|+|+-|.-. +..++.+.+++|-.. .+.+ .++.+|..-...
T Consensus 192 i~~k~~ytG~vq~~~~~~~~p~~~-----~pE~~~Ilvs~GGG~--dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~MP~~ 264 (400)
T COG4671 192 IRAKMRYTGFVQRSLPHLPLPPHE-----APEGFDILVSVGGGA--DGAELIETALAAAQLLAGLNHKWLIVTGPFMPEA 264 (400)
T ss_pred hhhheeEeEEeeccCcCCCCCCcC-----CCccceEEEecCCCh--hhHHHHHHHHHHhhhCCCCCcceEEEeCCCCCHH
Confidence 457899999984332111111111 012236888877743 667788887777765 3443 667777542111
Q ss_pred ----C-CCC--CceEEEcCCCCh-hhhhccccEEEEeCChhHHHHHHHhCCCEEeecCC---CChhHHHHHHHHcCCCCC
Q 008369 420 ----L-AES--KDFVYLLDNCPH-DWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFF---GDQPFWGERVHARGLGPA 488 (568)
Q Consensus 420 ----l-~~~--~~nv~~~~~vP~-~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~---~DQ~~na~~v~~~G~G~~ 488 (568)
+ ... -+++.+..|-.+ ..++..|+.+|+-||+||++|.|++|||.+++|+. -+|..-|.|++++|+--
T Consensus 265 ~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~d- 343 (400)
T COG4671 265 QRQKLLASAPKRPHISIFEFRNDFESLLAGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVD- 343 (400)
T ss_pred HHHHHHHhcccCCCeEEEEhhhhHHHHHHhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcce-
Confidence 1 112 378999999764 56679999999999999999999999999999987 47999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCCC
Q 008369 489 PIPVEEFSLDKLVDAIRFMLD-PKVKEHAVELAKAMENEDGVTGAVKAFYKHFPG 542 (568)
Q Consensus 489 ~i~~~~lt~e~L~~aI~~lLd-~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~~ 542 (568)
.+..+++|++.|+++|..+++ |+... .--+-+|.+...+.+.+.|..
T Consensus 344 vL~pe~lt~~~La~al~~~l~~P~~~~-------~~L~L~G~~~~a~~l~e~L~~ 391 (400)
T COG4671 344 VLLPENLTPQNLADALKAALARPSPSK-------PHLDLEGLEHIARILAELLST 391 (400)
T ss_pred eeCcccCChHHHHHHHHhcccCCCCCc-------cccCchhhHhHHHHHHHHhhh
Confidence 788899999999999999985 43221 223346776677766666543
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.68 E-value=9.2e-16 Score=154.96 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=76.6
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHc--CceEEEEcCCCCC--CCC---CCCCceEEEcCCCChh-hhhccccEEEE
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEIT--GHRGIINKGWGGL--GNL---AESKDFVYLLDNCPHD-WLFSRCLAVVH 447 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~--~~l---~~~~~nv~~~~~vP~~-~ll~~~~~~I~ 447 (568)
+.|+|+||.... ..++..+++++... +.++.++.|.... +.+ ....+|+.+.+++++. .+|..||++|+
T Consensus 171 ~~iLi~~GG~d~---~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 171 RRVLVSFGGADP---DNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIG 247 (279)
T ss_pred CeEEEEeCCcCC---cCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEE
Confidence 579999997643 23555567777654 4566667765431 111 1234689999999865 67899999999
Q ss_pred eCChhHHHHHHHhCCCEEeecCCCChhHHHHH
Q 008369 448 HGGAGTTAAGLKAACPTTIVPFFGDQPFWGER 479 (568)
Q Consensus 448 HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~ 479 (568)
+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 248 ~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 248 AAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 999 9999999999999999999999999875
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=7.6e-15 Score=155.74 Aligned_cols=160 Identities=13% Similarity=0.184 Sum_probs=121.6
Q ss_pred cCCCcEEEeCCCCCC-CChHHHHHHHHHHH-HH-cCceEEEEcCCCC-C-CCCC---CCCceEEEcCCCCh-hhhhcccc
Q 008369 373 DGEKPIYIGFGSLPV-EEPEKMTEIIVKAL-EI-TGHRGIINKGWGG-L-GNLA---ESKDFVYLLDNCPH-DWLFSRCL 443 (568)
Q Consensus 373 ~~~p~VyVsfGS~~~-~~~~~l~~~i~~al-~~-~~~~~Iv~~g~~~-~-~~l~---~~~~nv~~~~~vP~-~~ll~~~~ 443 (568)
.++++|++..|+... ..-+.+ ++++ +. .+.++++.+|.+. + +.+. ...+++.+.+|+.+ ..++..+|
T Consensus 200 ~~~~~ilv~~G~lg~~k~~~~l----i~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~~~aD 275 (391)
T PRK13608 200 PDKQTILMSAGAFGVSKGFDTM----ITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWMASSQ 275 (391)
T ss_pred CCCCEEEEECCCcccchhHHHH----HHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHHHhhh
Confidence 345678888898763 232333 3443 22 2467777766542 1 1121 12458999999964 35689999
Q ss_pred EEEEeCChhHHHHHHHhCCCEEee-cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 444 AVVHHGGAGTTAAGLKAACPTTIV-PFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 444 ~~I~HGG~gT~~EaL~~GvP~viv-P~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
++|+..|..|+.||+++|+|+|+. |..++|..|+..+++.|+|+ ... +.+++.++|.+++ |++.++++++-+.
T Consensus 276 l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~-~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~ 350 (391)
T PRK13608 276 LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGK-IAD----TPEEAIKIVASLTNGNEQLTNMISTME 350 (391)
T ss_pred EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEE-EeC----CHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999998889999999999999998 77777889999999999997 332 7899999999999 8888888888888
Q ss_pred HhhcCCcHHHHHHHHHHhCC
Q 008369 522 AMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 522 ~~~~~~g~~~av~~i~~~l~ 541 (568)
.+....+.+..++.+++.+.
T Consensus 351 ~~~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 351 QDKIKYATQTICRDLLDLIG 370 (391)
T ss_pred HhcCCCCHHHHHHHHHHHhh
Confidence 88888888999999988774
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.64 E-value=3.6e-17 Score=152.53 Aligned_cols=139 Identities=21% Similarity=0.277 Sum_probs=100.2
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHc--CceEEEEcCCCCCCC----CCCCCceEEEcCCCC-hhhhhccccEEEEeC
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEIT--GHRGIINKGWGGLGN----LAESKDFVYLLDNCP-HDWLFSRCLAVVHHG 449 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~----l~~~~~nv~~~~~vP-~~~ll~~~~~~I~HG 449 (568)
+|+|+.||.....-.+++..+++.+... ..++++.+|...... ....+.++.+.+|++ ...++..+|++||||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvIs~a 80 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVISHA 80 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEEeCC
Confidence 5899999875321112222223333332 477888888663221 122236899999999 788899999999999
Q ss_pred ChhHHHHHHHhCCCEEeecCCC----ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 450 GAGTTAAGLKAACPTTIVPFFG----DQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 450 G~gT~~EaL~~GvP~vivP~~~----DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
|+||++|++++|+|+|++|... +|..|+..+++.|+|. .+....++.++|.++|..++ ++..+..+
T Consensus 81 G~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~-~~~~~~~~~~~L~~~i~~l~~~~~~~~~~ 151 (167)
T PF04101_consen 81 GAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAI-MLDESELNPEELAEAIEELLSDPEKLKEM 151 (167)
T ss_dssp -CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCC-CSECCC-SCCCHHHHHHCHCCCHH-SHHH
T ss_pred CccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCcc-ccCcccCCHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999999999999998 9999999999999999 78888888999999999999 76654433
No 42
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.62 E-value=1.3e-15 Score=137.35 Aligned_cols=137 Identities=34% Similarity=0.436 Sum_probs=95.9
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCC-hHHHHHHHhhcCCCCCCCCCChhHH
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGD-PKILAGYMVKNKGFLPSGPSEIPIQ 203 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~-~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (568)
|+|++.|++||++|+++||++|+++||+|++++++.+.+.++..|++|.+++.+ .-.-.....++. ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~Gl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 73 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAAGLEFVPIPGDSRLPRSLEPLANL-------RRLARL 73 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHTT-EEEESSSCGGGGHHHHHHHHH-------HCHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecccccCceEEEecCCcCcCcccchhhhh-------hhHHHH
Confidence 789999999999999999999999999999999999999999999999999887 111000011100 011111
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCCCC
Q 008369 204 RNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTSEF 268 (568)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~~~ 268 (568)
...+....+.+.+...+..........+|+++++.....+..+||++|||++....+|+.+++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~~~~~~ 138 (139)
T PF03033_consen 74 IRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWFATRVF 138 (139)
T ss_dssp HHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGGSTCSC
T ss_pred hhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcCcCccc
Confidence 22333333333333333333344455789999999888899999999999999999998876643
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.55 E-value=1.3e-12 Score=138.27 Aligned_cols=163 Identities=16% Similarity=0.117 Sum_probs=119.3
Q ss_pred cCCCcEEEeCCCCCCCChHHHHHHHHHHHH-----HcCceEEEEcCCCC-C-CCCC--CCCceEEEcCCCCh-hhhhccc
Q 008369 373 DGEKPIYIGFGSLPVEEPEKMTEIIVKALE-----ITGHRGIINKGWGG-L-GNLA--ESKDFVYLLDNCPH-DWLFSRC 442 (568)
Q Consensus 373 ~~~p~VyVsfGS~~~~~~~~l~~~i~~al~-----~~~~~~Iv~~g~~~-~-~~l~--~~~~nv~~~~~vP~-~~ll~~~ 442 (568)
.+.++|++..|+........+.+.+.+.+. ..+.++++.+|.+. . ..+. ....++.+.+|+++ ..++..+
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~~aa 283 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWMGAC 283 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHHHhC
Confidence 345667666676655444555444332221 12355666666442 1 1121 12357899999985 4557999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEeecCCCChh-HHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C-HHHHHHHHHH
Q 008369 443 LAVVHHGGAGTTAAGLKAACPTTIVPFFGDQP-FWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-D-PKVKEHAVEL 519 (568)
Q Consensus 443 ~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~-~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d-~~~r~~a~~l 519 (568)
|++|+.+|.+|++||+++|+|+|+.+....|. .|+..+.+.|.|. .+ -++++|+++|.+++ | ++.++++++.
T Consensus 284 Dv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~-~~----~~~~~la~~i~~ll~~~~~~~~~m~~~ 358 (382)
T PLN02605 284 DCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGA-FS----ESPKEIARIVAEWFGDKSDELEAMSEN 358 (382)
T ss_pred CEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCcee-ec----CCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999998765665 7999999999997 33 47899999999999 7 8888888888
Q ss_pred HHHhhcCCcHHHHHHHHHHhC
Q 008369 520 AKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 520 a~~~~~~~g~~~av~~i~~~l 540 (568)
++.....+++++.++.+.+.+
T Consensus 359 ~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 359 ALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHhcCCchHHHHHHHHHHHh
Confidence 888888888888888887764
No 44
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.49 E-value=7.7e-13 Score=140.19 Aligned_cols=185 Identities=17% Similarity=0.104 Sum_probs=120.3
Q ss_pred CCceEecceeccCCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHc----CceEEEEc-CCCCCCC
Q 008369 345 PKIDVVGFCFLDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEIT----GHRGIINK-GWGGLGN 419 (568)
Q Consensus 345 ~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~----~~~~Iv~~-g~~~~~~ 419 (568)
-++.++|-...+.-..... . -++.+.+.|.+--||-..... .....++++++.. +..+++.+ +....+.
T Consensus 180 ~k~~~vGnPv~d~l~~~~~-~----~l~~~~~~lllLpGSR~ae~~-~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~ 253 (396)
T TIGR03492 180 VRASYLGNPMMDGLEPPER-K----PLLTGRFRIALLPGSRPPEAY-RNLKLLLRALEALPDSQPFVFLAAIVPSLSLEK 253 (396)
T ss_pred CeEEEeCcCHHhcCccccc-c----ccCCCCCEEEEECCCCHHHHH-ccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHH
Confidence 4788899555543221111 1 133455678888888643222 1233456666554 56777766 3222111
Q ss_pred C----C--CC--------------CceEEEcCCC-ChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHH
Q 008369 420 L----A--ES--------------KDFVYLLDNC-PHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGE 478 (568)
Q Consensus 420 l----~--~~--------------~~nv~~~~~v-P~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~ 478 (568)
+ . .. .+++.+..+. ....++..||++|+.+|..| .|++..|+|+|++|+-+.|. |+.
T Consensus 254 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~ 331 (396)
T TIGR03492 254 LQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYG 331 (396)
T ss_pred HHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHH
Confidence 1 1 11 1235555554 34567899999999999766 99999999999999887786 988
Q ss_pred HHHHc----CCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH-HHHHHhhcCCcHHHHHHHHHHhC
Q 008369 479 RVHAR----GLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAV-ELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 479 ~v~~~----G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~-~la~~~~~~~g~~~av~~i~~~l 540 (568)
..++. |.+. .+. +.+.+.|.+++..++ |++.++++. +..+.+...+..+++++.+.+++
T Consensus 332 ~~~~~~~l~g~~~-~l~--~~~~~~l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 332 FAEAQSRLLGGSV-FLA--SKNPEQAAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESILKQL 396 (396)
T ss_pred HHHhhHhhcCCEE-ecC--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 77764 6665 444 345699999999999 888777666 45566666677788888887653
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.48 E-value=1.5e-11 Score=127.42 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=110.8
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH-cCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhh---hccccEEEEeC
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI-TGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWL---FSRCLAVVHHG 449 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~-~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~l---l~~~~~~I~HG 449 (568)
++.+++..|++... ..+.+.+. ++.+.. .+.++++.........+....+||.+.++++++++ +..+|++|+.+
T Consensus 196 ~~~~i~~~G~~~~~k~~~~~i~~-~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s 274 (364)
T cd03814 196 DRPVLLYVGRLAPEKNLEALLDA-DLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAYASADVFVFPS 274 (364)
T ss_pred CCeEEEEEeccccccCHHHHHHH-HHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHHHhCCEEEECc
Confidence 34666777776432 33333333 333332 24566665433322222245679999999998775 69999999876
Q ss_pred C----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhh
Q 008369 450 G----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAME 524 (568)
Q Consensus 450 G----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~ 524 (568)
. .+++.||+++|+|+|+.+..+ +...+++.+.|. ..+ .-+.++++++|.+++ |++.++++.+-+....
T Consensus 275 ~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~-~~~--~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 347 (364)
T cd03814 275 RTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGL-LVE--PGDAEAFAAALAALLADPELRRRMAARARAEA 347 (364)
T ss_pred ccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceE-EcC--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 5 378999999999999987543 556677778887 444 446788999999999 8888888777777766
Q ss_pred cCCcHHHHHHHHHHhC
Q 008369 525 NEDGVTGAVKAFYKHF 540 (568)
Q Consensus 525 ~~~g~~~av~~i~~~l 540 (568)
....++..++.+.+.+
T Consensus 348 ~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 348 ERRSWEAFLDNLLEAY 363 (364)
T ss_pred hhcCHHHHHHHHHHhh
Confidence 6678888888887764
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.42 E-value=1.7e-11 Score=118.42 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=187.5
Q ss_pred eEEEEEecC----CCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc--CCceeeccCCChHHHHHHHhhcCCCCCCC
Q 008369 123 LHIVMLIVG----TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG--AGLEFFPLGGDPKILAGYMVKNKGFLPSG 196 (568)
Q Consensus 123 m~Ili~~~g----s~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~--~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~ 196 (568)
|||+|.+-+ +.|||.+++.||++|.++|..++|++..+..+++.+ .++.+...
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~~~~~~~~~f~~~~~--------------------- 59 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEAIIHKVYEGFKVLEG--------------------- 59 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhhhhhhhhhhccceee---------------------
Confidence 899999866 569999999999999999999999998765543221 00000000
Q ss_pred CCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCccc---HHHHHHHcCCCEEEEeccCCCCCCCCCCCcc
Q 008369 197 PSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG---HTHVAESLKVPLHIIFTMPWTPTSEFPHPLS 273 (568)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~---~~~~A~~lgIP~v~~~t~p~~~~~~~p~p~~ 273 (568)
. .-+.+++.++|++|.|.+... .-.+.+..+.+.+++-.....+
T Consensus 60 ----------------------~--~~n~ik~~k~d~lI~Dsygl~~dd~k~ik~e~~~k~l~fDd~~~~~--------- 106 (318)
T COG3980 60 ----------------------R--GNNLIKEEKFDLLIFDSYGLNADDFKLIKEEAGSKILIFDDENAKS--------- 106 (318)
T ss_pred ----------------------e--cccccccccCCEEEEeccCCCHHHHHHHHHHhCCcEEEecCCCccc---------
Confidence 0 000234558999999987664 5567888999999875532111
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCcccccCCCCCCCCCCeeeecCCCCCCCCCCCCCC-ceEe
Q 008369 274 RVKQPVAYRLSYQIVDALIWLGIRDMINDFRKK--RLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPKPKDWGPK-IDVV 350 (568)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~~r~~--~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~p~~~~~~-v~~v 350 (568)
+ . ...-.+|..+.. ..++ +| .+ -.+.
T Consensus 107 -------~--~----------d~d~ivN~~~~a~~~y~~--------------------------v~------~k~~~~l 135 (318)
T COG3980 107 -------F--K----------DNDLIVNAILNANDYYGL--------------------------VP------NKTRYYL 135 (318)
T ss_pred -------h--h----------hhHhhhhhhhcchhhccc--------------------------cC------cceEEEe
Confidence 0 0 011122322210 0000 01 11 1345
Q ss_pred cceeccCCCCCCCChhhH----HhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCC--CCCC---C
Q 008369 351 GFCFLDLASTYEPPDSLV----KWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGG--LGNL---A 421 (568)
Q Consensus 351 Gpl~~~~~~~~~~~~~l~----~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~--~~~l---~ 421 (568)
||=+.. ..+++. +.+.+...-|+|++|.. +|..++-.++..+...++.+-++.|..+ +..+ .
T Consensus 136 Gp~y~~------lr~eF~~~r~~~~~r~~r~ilI~lGGs---Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~ 206 (318)
T COG3980 136 GPGYAP------LRPEFYALREENTERPKRDILITLGGS---DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRA 206 (318)
T ss_pred cCCcee------ccHHHHHhHHHHhhcchheEEEEccCC---ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHH
Confidence 542221 112211 11222223699999984 7777888889999888877666666332 1111 1
Q ss_pred CCCceEEEcCCCC-hhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 008369 422 ESKDFVYLLDNCP-HDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKL 500 (568)
Q Consensus 422 ~~~~nv~~~~~vP-~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L 500 (568)
+..+|+.+..+.. +..|+..||+.|+.|| .|+.|++..|+|.+++|+...|---|...++.|+-. .+... ++.+.+
T Consensus 207 ~~~~~i~~~~~~~dma~LMke~d~aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~-~l~~~-l~~~~~ 283 (318)
T COG3980 207 EKYPNINLYIDTNDMAELMKEADLAISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEALGIIK-QLGYH-LKDLAK 283 (318)
T ss_pred hhCCCeeeEecchhHHHHHHhcchheeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchh-hccCC-CchHHH
Confidence 2356777776665 5668899999999999 599999999999999999999999999999999987 56544 677777
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhhcCCcH
Q 008369 501 VDAIRFML-DPKVKEHAVELAKAMENEDGV 529 (568)
Q Consensus 501 ~~aI~~lL-d~~~r~~a~~la~~~~~~~g~ 529 (568)
..-+..+. |...|.+....++.+-+..|.
T Consensus 284 ~~~~~~i~~d~~~rk~l~~~~~~i~dg~g~ 313 (318)
T COG3980 284 DYEILQIQKDYARRKNLSFGSKLIGDGRGF 313 (318)
T ss_pred HHHHHHhhhCHHHhhhhhhccceeeccccc
Confidence 77777777 887777766666555544443
No 47
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.37 E-value=5.2e-10 Score=121.60 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=101.4
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCCCC--CCceEEEcCCCChhhh---hccccEEEEeCC
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEIT-GHRGIINKGWGGLGNLAE--SKDFVYLLDNCPHDWL---FSRCLAVVHHGG 450 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l~~--~~~nv~~~~~vP~~~l---l~~~~~~I~HGG 450 (568)
++++..|++. +++-.+.++++++.. +.+++++..+...+.+.. ...+|.+.++++++++ +..+|++|.-..
T Consensus 264 ~~i~~vGrl~---~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~ 340 (465)
T PLN02871 264 PLIVYVGRLG---AEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSE 340 (465)
T ss_pred eEEEEeCCCc---hhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCc
Confidence 4556667764 344456667777765 567666543222222211 1357999999998775 699999997554
Q ss_pred ----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH---cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 008369 451 ----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHA---RGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKA 522 (568)
Q Consensus 451 ----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~---~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~ 522 (568)
..++.||+++|+|+|+.... .....+++ .+.|. .++. -+.++++++|.+++ |++.++++.+.++.
T Consensus 341 ~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~~~G~-lv~~--~d~~~la~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 341 SETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEGKTGF-LYTP--GDVDDCVEKLETLLADPELRERMGAAARE 413 (465)
T ss_pred ccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCCCceE-EeCC--CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 35789999999999987643 23445555 67787 5543 36899999999999 88877766666655
Q ss_pred hhcCCcHHHHHHHHHH
Q 008369 523 MENEDGVTGAVKAFYK 538 (568)
Q Consensus 523 ~~~~~g~~~av~~i~~ 538 (568)
..+.-.++..++.+.+
T Consensus 414 ~~~~fsw~~~a~~l~~ 429 (465)
T PLN02871 414 EVEKWDWRAATRKLRN 429 (465)
T ss_pred HHHhCCHHHHHHHHHH
Confidence 5444566555555543
No 48
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.31 E-value=1.3e-09 Score=111.96 Aligned_cols=320 Identities=20% Similarity=0.237 Sum_probs=179.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--chhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCCh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN--FKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEI 200 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~--~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (568)
|||.|-..... |+.-|-.+.++|.++||+|.+.+-+. ..+.++..|+++..++.....+ .
T Consensus 1 MkIwiDi~~p~-hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~-----------------~ 62 (335)
T PF04007_consen 1 MKIWIDITHPA-HVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSL-----------------Y 62 (335)
T ss_pred CeEEEECCCch-HHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCH-----------------H
Confidence 78887655444 99999999999999999999998643 4578889999999998642111 1
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEeccCCCCCC-CCCCCcccCCCcc
Q 008369 201 PIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTMPWTPTS-EFPHPLSRVKQPV 279 (568)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~p~~~~~-~~p~p~~~~~~~~ 279 (568)
.+.......... +.+ ..++++||++|+- .+..+.++|..+|+|++.+.-.+..... ..-.|++.
T Consensus 63 ~Kl~~~~~R~~~-l~~--------~~~~~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt~Pla~----- 127 (335)
T PF04007_consen 63 GKLLESIERQYK-LLK--------LIKKFKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQNRLTLPLAD----- 127 (335)
T ss_pred HHHHHHHHHHHH-HHH--------HHHhhCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccceeehhcCC-----
Confidence 111111111111 111 2335689999975 3455678999999999998654322100 00001100
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccCCCCCCCCCCeeeecCCCCCCC--CCCCCCC--ce-Eeccee
Q 008369 280 AYRLSYQIVDALIWLGIRDMINDFRKKRLNLRRVTYLSGSYSSPLDVPYAYIWSPHLVPK--PKDWGPK--ID-VVGFCF 354 (568)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~in~~r~~~l~l~~~~~~~~~~~~~~~~~~~~~~sp~l~p~--p~~~~~~--v~-~vGpl~ 354 (568)
.+..|..++. ..+++.+ +. |-|..=
T Consensus 128 --------------------------------------------------~i~~P~~~~~~~~~~~G~~~~i~~y~G~~E 157 (335)
T PF04007_consen 128 --------------------------------------------------VIITPEAIPKEFLKRFGAKNQIRTYNGYKE 157 (335)
T ss_pred --------------------------------------------------eeECCcccCHHHHHhcCCcCCEEEECCeee
Confidence 0111111110 0112221 32 333210
Q ss_pred ccCCCCCCCChhhHHhhh-cCCCcEEEeCCCCCC---CChHHHHHHHHHHHHHcCceEEEEcCCCCCCCC-CCCCceEEE
Q 008369 355 LDLASTYEPPDSLVKWLE-DGEKPIYIGFGSLPV---EEPEKMTEIIVKALEITGHRGIINKGWGGLGNL-AESKDFVYL 429 (568)
Q Consensus 355 ~~~~~~~~~~~~l~~~L~-~~~p~VyVsfGS~~~---~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l-~~~~~nv~~ 429 (568)
.---..+.++++..+-+. +..+.|+|=+-+... .....+...+++.+++.+..+|+.....+...+ +.. ++.+
T Consensus 158 ~ayl~~F~Pd~~vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~--~~~i 235 (335)
T PF04007_consen 158 LAYLHPFKPDPEVLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKY--GVII 235 (335)
T ss_pred EEeecCCCCChhHHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhcc--Cccc
Confidence 000011344444444443 234566666655321 123345556788888888765544332222211 111 2333
Q ss_pred c-CCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 430 L-DNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 430 ~-~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
. .-+....|+..||++|+-|| ....||...|+|+|-+ +.++-...-+.+.+.|.-. ..-+.+++.+.+...+
T Consensus 236 ~~~~vd~~~Ll~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~-----~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 236 PPEPVDGLDLLYYADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLY-----HSTDPDEIVEYVRKNL 308 (335)
T ss_pred cCCCCCHHHHHHhcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeE-----ecCCHHHHHHHHHHhh
Confidence 3 23444578999999999887 7889999999999986 3345334445677777633 2446777777665543
Q ss_pred CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 509 DPKVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 509 d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
..+.+... ...++-.+..++.+++.+
T Consensus 309 --~~~~~~~~----~~~~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 309 --GKRKKIRE----KKSEDPTDLIIEEIEEYI 334 (335)
T ss_pred --hcccchhh----hhccCHHHHHHHHHHHhh
Confidence 22222222 222677778888887765
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.29 E-value=9e-10 Score=114.46 Aligned_cols=154 Identities=18% Similarity=0.082 Sum_probs=98.5
Q ss_pred CCCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCC-----CCCCceEEEcCCCChhhh---hcccc
Q 008369 374 GEKPIYIGFGSLPVE-EPEKMTEIIVKALEIT-GHRGIINKGWGGLGNL-----AESKDFVYLLDNCPHDWL---FSRCL 443 (568)
Q Consensus 374 ~~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l-----~~~~~nv~~~~~vP~~~l---l~~~~ 443 (568)
..+.+++..|+.... ..+.+.+. ++.+... +.++++...+.....+ ....+|+.+.++++++.+ +..+|
T Consensus 218 ~~~~~i~~~G~~~~~k~~~~l~~~-~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d 296 (394)
T cd03794 218 DDKFVVLYAGNIGRAQGLDTLLEA-AALLKDRPDIRFLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAAD 296 (394)
T ss_pred CCcEEEEEecCcccccCHHHHHHH-HHHHhhcCCeEEEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhC
Confidence 345677777876543 33444443 3444333 5666655432221111 123478999999998775 69999
Q ss_pred EEEEeCC---------hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 008369 444 AVVHHGG---------AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVK 513 (568)
Q Consensus 444 ~~I~HGG---------~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r 513 (568)
++|.... .+++.||+++|+|+|+.+..+.+ ..+...+.|. .++. -+.++++++|..++ |++.+
T Consensus 297 i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~~~~g~-~~~~--~~~~~l~~~i~~~~~~~~~~ 369 (394)
T cd03794 297 VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEEAGAGL-VVPP--GDPEALAAAILELLDDPEER 369 (394)
T ss_pred eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhccCCcce-EeCC--CCHHHHHHHHHHHHhChHHH
Confidence 9996533 34579999999999998876654 3344446776 4443 37899999999999 88877
Q ss_pred HHHHHHHHHhhc-CCcHHHHHHH
Q 008369 514 EHAVELAKAMEN-EDGVTGAVKA 535 (568)
Q Consensus 514 ~~a~~la~~~~~-~~g~~~av~~ 535 (568)
+++.+.+..... .-..+..++.
T Consensus 370 ~~~~~~~~~~~~~~~s~~~~~~~ 392 (394)
T cd03794 370 AEMGENGRRYVEEKFSREKLAER 392 (394)
T ss_pred HHHHHHHHHHHHHhhcHHHHHHh
Confidence 776666555443 4555555544
No 50
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.26 E-value=2.1e-09 Score=110.30 Aligned_cols=158 Identities=18% Similarity=0.139 Sum_probs=104.6
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hccc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
.+.+++.+|+.... ..+.+.+. +..+... +.++++..+......+ ...+++|.+.++++++++ +..+
T Consensus 198 ~~~~i~~~g~~~~~k~~~~~i~~-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~ 276 (374)
T cd03801 198 DEPVILFVGRLVPRKGVDLLLEA-LAKLRKEYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAA 276 (374)
T ss_pred CCeEEEEecchhhhcCHHHHHHH-HHHHhhhcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhc
Confidence 34566777776432 23333333 3333332 3555555422211111 135679999999987765 6999
Q ss_pred cEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 008369 443 LAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAV 517 (568)
Q Consensus 443 ~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~ 517 (568)
|++|+- |..+++.||+++|+|+|+.+. ......+++.+.|. .++ ..+.++++++|..++ |++.++.+.
T Consensus 277 di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~-~~~--~~~~~~l~~~i~~~~~~~~~~~~~~ 349 (374)
T cd03801 277 DVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGL-LVP--PGDPEALAEAILRLLDDPELRRRLG 349 (374)
T ss_pred CEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceE-EeC--CCCHHHHHHHHHHHHcChHHHHHHH
Confidence 999953 456899999999999998764 44566676677776 444 445899999999999 887766665
Q ss_pred HHHH-HhhcCCcHHHHHHHHHHhC
Q 008369 518 ELAK-AMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 518 ~la~-~~~~~~g~~~av~~i~~~l 540 (568)
+-+. .+.+.-..+..++.+.+.+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 350 EAARERVAERFSWDRVAARTEEVY 373 (374)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhh
Confidence 5554 5666778888888777664
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.25 E-value=1.1e-09 Score=113.01 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=98.4
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCC---CCCceEEEcCCCChhhh---hccccEEEE
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEITGHRGIINKGWGGLGNLA---ESKDFVYLLDNCPHDWL---FSRCLAVVH 447 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~---~~~~nv~~~~~vP~~~l---l~~~~~~I~ 447 (568)
.+.+++..|++... ..+.+.+. +..+...++++++..+........ ...+++.+.++++++.+ +.++|++|+
T Consensus 190 ~~~~i~~~G~~~~~k~~~~li~~-~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ 268 (359)
T cd03823 190 GRLRFGFIGQLTPHKGVDLLLEA-FKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVV 268 (359)
T ss_pred CceEEEEEecCccccCHHHHHHH-HHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEE
Confidence 34666777876532 33333333 233322367776654332211111 23579999999987776 699999995
Q ss_pred e-----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 448 H-----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 448 H-----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
. |...++.||+++|+|+|+.+. ..+...+.+.+.|. .++. -+.++++++|..++ |++.++.+.+-+.
T Consensus 269 ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~~~g~-~~~~--~d~~~l~~~i~~l~~~~~~~~~~~~~~~ 341 (359)
T cd03823 269 PSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDGVNGL-LFPP--GDAEDLAAALERLIDDPDLLERLRAGIE 341 (359)
T ss_pred cCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCCCcEE-EECC--CCHHHHHHHHHHHHhChHHHHHHHHhHH
Confidence 3 234589999999999998653 44667777766776 4543 35899999999999 8877666655554
Q ss_pred HhhcCCcHHHHHHHHHHhC
Q 008369 522 AMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 522 ~~~~~~g~~~av~~i~~~l 540 (568)
..... +..++.+++.+
T Consensus 342 ~~~~~---~~~~~~~~~~~ 357 (359)
T cd03823 342 PPRSI---EDQAEEYLKLY 357 (359)
T ss_pred HhhhH---HHHHHHHHHHh
Confidence 43332 55555555543
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.24 E-value=4.4e-09 Score=107.91 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=99.1
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCCC-------CCCCceEEEcCCCC-hhhhhcccc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGNL-------AESKDFVYLLDNCP-HDWLFSRCL 443 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~l-------~~~~~nv~~~~~vP-~~~ll~~~~ 443 (568)
.+.+++..|++... ..+.+.+. ++.+.. .+.++++..+....... ....++|.+.++.. ...++.++|
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad 265 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEA-ARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELLAAAD 265 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHH-HHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHHHhcc
Confidence 45777888887543 33333433 344432 34666665433321111 12356899999843 234579999
Q ss_pred EEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 444 AVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 444 ~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
++|+.+. .+++.||+++|+|+|+-+..+ +...+.+.+.|. .++ .-+.++++++|.+++ |++.+++..+
T Consensus 266 i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~-~~~--~~~~~~~~~~i~~l~~~~~~~~~~~~ 338 (359)
T cd03808 266 VFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGF-LVP--PGDAEALADAIERLIEDPELRARMGQ 338 (359)
T ss_pred EEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceE-EEC--CCCHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9997654 589999999999999975443 345666667776 454 336899999999988 8877766665
Q ss_pred HHHHh-hcCCcHHHHHHHHH
Q 008369 519 LAKAM-ENEDGVTGAVKAFY 537 (568)
Q Consensus 519 la~~~-~~~~g~~~av~~i~ 537 (568)
-+... .+.-..+..++.++
T Consensus 339 ~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 339 AARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHhcCHHHHHHHhh
Confidence 55544 55566666665543
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.20 E-value=5.8e-09 Score=110.96 Aligned_cols=105 Identities=16% Similarity=0.099 Sum_probs=74.4
Q ss_pred CceEEEcCCCChhhh---hccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 008369 424 KDFVYLLDNCPHDWL---FSRCLAVVHHG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFS 496 (568)
Q Consensus 424 ~~nv~~~~~vP~~~l---l~~~~~~I~HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt 496 (568)
.++|.+.+++|++++ +..+|++|.-. | ..++.|||++|+|+|+.. .......+.....|. .++. -+
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~~~G~-lv~~--~d 352 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDGENGL-LVDF--FD 352 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccCCceE-EcCC--CC
Confidence 468999999998776 68999998532 2 248999999999999864 344556666666776 5543 36
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhhcC-CcHHHHHHH
Q 008369 497 LDKLVDAIRFML-DPKVKEHAVELAKAMENE-DGVTGAVKA 535 (568)
Q Consensus 497 ~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~-~g~~~av~~ 535 (568)
+++++++|.+++ |++.++++.+.+++...+ -..+..++.
T Consensus 353 ~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~ 393 (396)
T cd03818 353 PDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPR 393 (396)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 899999999999 887766665555443322 444444443
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.20 E-value=1.4e-08 Score=107.15 Aligned_cols=155 Identities=14% Similarity=0.037 Sum_probs=101.3
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCC--C----------CCCCCceEEEcCCCChhhh-
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLG--N----------LAESKDFVYLLDNCPHDWL- 438 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~--~----------l~~~~~nv~~~~~vP~~~l- 438 (568)
...+++..|++... ..+.+.+. +..+.. .+.++++..+..... . .....+|+.+.+++|+.++
T Consensus 219 ~~~~i~~~gr~~~~k~~~~ll~a-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 297 (398)
T cd03800 219 DKPRILAVGRLDPRKGIDTLIRA-YAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLP 297 (398)
T ss_pred CCcEEEEEcccccccCHHHHHHH-HHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHH
Confidence 34677777887532 33444443 333332 246776665433211 0 0123578999999998876
Q ss_pred --hccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 008369 439 --FSRCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPK 511 (568)
Q Consensus 439 --l~~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~ 511 (568)
+..+|++|+.+- ..++.||+++|+|+|+.+.. .....+++.+.|. .++. -+.++++++|..++ |++
T Consensus 298 ~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~~~g~-~~~~--~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 298 ALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDGVTGL-LVDP--RDPEALAAALRRLLTDPA 370 (398)
T ss_pred HHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCCCCeE-EeCC--CCHHHHHHHHHHHHhCHH
Confidence 699999996532 36899999999999987643 3556677777887 5543 36899999999999 887
Q ss_pred HHHHHHHHHHHhh-cCCcHHHHHHHHH
Q 008369 512 VKEHAVELAKAME-NEDGVTGAVKAFY 537 (568)
Q Consensus 512 ~r~~a~~la~~~~-~~~g~~~av~~i~ 537 (568)
.++++.+-+.+.. +.-..+..++.++
T Consensus 371 ~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 371 LRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 7666665554433 4455666555543
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.18 E-value=1.1e-08 Score=107.13 Aligned_cols=157 Identities=11% Similarity=0.043 Sum_probs=101.2
Q ss_pred CcEEEeCCCCCC-CChHHHHHHHHHHHH-HcCceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhccccEEE
Q 008369 376 KPIYIGFGSLPV-EEPEKMTEIIVKALE-ITGHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSRCLAVV 446 (568)
Q Consensus 376 p~VyVsfGS~~~-~~~~~l~~~i~~al~-~~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~~~~~I 446 (568)
+.+++.+|.+.. ...+.+.+. ++.+. ..+.++++...+.+...+ ....++|.+.++.++ ..++..+|++|
T Consensus 197 ~~~il~~g~l~~~K~~~~li~a-~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~~v 275 (371)
T cd04962 197 EKVLIHISNFRPVKRIDDVIRI-FAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELLSIADLFL 275 (371)
T ss_pred CeEEEEecccccccCHHHHHHH-HHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHHHhcCEEE
Confidence 456667777643 344444444 23332 235666665433221111 124578999998764 34579999999
Q ss_pred Ee----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 447 HH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 447 ~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
.- |...++.||+++|+|+|+... ......+++...|. .++. -+.++++++|..++ |++.+.++++-+.
T Consensus 276 ~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~~~G~-~~~~--~~~~~l~~~i~~l~~~~~~~~~~~~~~~ 348 (371)
T cd04962 276 LPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHGETGF-LVDV--GDVEAMAEYALSLLEDDELWQEFSRAAR 348 (371)
T ss_pred eCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCCCceE-EcCC--CCHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 54 334699999999999999643 34556666666776 4543 36899999999999 8877766666555
Q ss_pred Hh-hcCCcHHHHHHHHHHhC
Q 008369 522 AM-ENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 522 ~~-~~~~g~~~av~~i~~~l 540 (568)
.. .+.-..+..++.+.+.+
T Consensus 349 ~~~~~~fs~~~~~~~~~~~y 368 (371)
T cd04962 349 NRAAERFDSERIVPQYEALY 368 (371)
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 54 45566666666666554
No 56
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.18 E-value=5.5e-09 Score=108.79 Aligned_cols=111 Identities=20% Similarity=0.169 Sum_probs=77.6
Q ss_pred CCceEEEcCCCC-hhhh---hccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC
Q 008369 423 SKDFVYLLDNCP-HDWL---FSRCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEE 494 (568)
Q Consensus 423 ~~~nv~~~~~vP-~~~l---l~~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~ 494 (568)
...++.+.++++ ++.+ +..+|++|... ..+++.||+++|+|+|+....+ ....+.+.+.|. .++ .
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~-~~~--~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGY-LAK--P 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceE-EeC--C
Confidence 567899999998 5443 79999999854 3589999999999999875432 223444445665 443 3
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHhh-cCCcHHHHHHHHHHhC
Q 008369 495 FSLDKLVDAIRFML-DPKVKEHAVELAKAME-NEDGVTGAVKAFYKHF 540 (568)
Q Consensus 495 lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~-~~~g~~~av~~i~~~l 540 (568)
.+.++++++|.+++ |++.+.+..+-+.... ..-..+..++.+.+.+
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~y 362 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRVQAKRYLSLY 362 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 47899999999999 8875555555544433 3456666777666654
No 57
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.14 E-value=2.9e-08 Score=101.41 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=98.1
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCCC------CCCCceEEEcCCCC-hhhhhccccE
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGNL------AESKDFVYLLDNCP-HDWLFSRCLA 444 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP-~~~ll~~~~~ 444 (568)
.+.+++.+|++... ..+.+.+. ++.+.. .+.++++...+.....+ ....+++.+.++.. ...++.++|+
T Consensus 177 ~~~~i~~~g~~~~~K~~~~l~~~-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 255 (348)
T cd03820 177 KSKRILAVGRLVPQKGFDLLIEA-WAKIAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGFTKNIEEYYAKASI 255 (348)
T ss_pred CCcEEEEEEeeccccCHHHHHHH-HHHHHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHHHHHHhCCE
Confidence 34566667776432 33333333 333332 24566655432221111 13467899998833 2345799999
Q ss_pred EEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 445 VVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARG-LGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 445 ~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G-~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
+|.-.. .+++.||+++|+|+|+.+..+.+ ..+...| .|. .++ .-+.++++++|.+++ |++.++++.+
T Consensus 256 ~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~-~~~--~~~~~~~~~~i~~ll~~~~~~~~~~~ 328 (348)
T cd03820 256 FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGL-LVP--NGDVEALAEALLRLMEDEELRKRMGA 328 (348)
T ss_pred EEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceE-EeC--CCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 997753 47999999999999987655443 2333444 676 443 446799999999999 8988888777
Q ss_pred HHHHhhcCCcHHHHHHHHH
Q 008369 519 LAKAMENEDGVTGAVKAFY 537 (568)
Q Consensus 519 la~~~~~~~g~~~av~~i~ 537 (568)
.+..+.+.-..+..++.++
T Consensus 329 ~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 329 NARESAERFSIENIIKQWE 347 (348)
T ss_pred HHHHHHHHhCHHHHHHHhc
Confidence 7766666666776666553
No 58
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.14 E-value=3.6e-08 Score=105.40 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=93.9
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHc----CceEEEEcCCCCCCCCC-----CCCceEEEcCCCChhhh---hccc
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEIT----GHRGIINKGWGGLGNLA-----ESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~----~~~~Iv~~g~~~~~~l~-----~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
+.+++..|++... ..+.+ ++|++.. +.+++++..+...+.+. ...+||.+.+++|++.+ +..+
T Consensus 229 ~~~i~~~G~l~~~kg~~~l----i~a~~~l~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~a 304 (412)
T PRK10307 229 KKIVLYSGNIGEKQGLELV----IDAARRLRDRPDLIFVICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMA 304 (412)
T ss_pred CEEEEEcCccccccCHHHH----HHHHHHhccCCCeEEEEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhc
Confidence 4566677887532 33333 4444432 36666654322222111 11248999999998765 6889
Q ss_pred cEEEEe---CC-----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH
Q 008369 443 LAVVHH---GG-----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVK 513 (568)
Q Consensus 443 ~~~I~H---GG-----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r 513 (568)
|++|.. ++ -+.+.|++++|+|+|+....+.. ....+. +.|. .++. -+.++|+++|.+++ |++.+
T Consensus 305 Di~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~-~~~~--~d~~~la~~i~~l~~~~~~~ 377 (412)
T PRK10307 305 DCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGV-CVEP--ESVEALVAAIAALARQALLR 377 (412)
T ss_pred CEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcE-EeCC--CCHHHHHHHHHHHHhCHHHH
Confidence 987642 22 13478999999999998754421 123334 6787 5543 46899999999999 88777
Q ss_pred HHHHHHHHHhh-cCCcHHHHHHHHHHhC
Q 008369 514 EHAVELAKAME-NEDGVTGAVKAFYKHF 540 (568)
Q Consensus 514 ~~a~~la~~~~-~~~g~~~av~~i~~~l 540 (568)
+++.+.+.... +.-..+..++.+++.+
T Consensus 378 ~~~~~~a~~~~~~~fs~~~~~~~~~~~~ 405 (412)
T PRK10307 378 PKLGTVAREYAERTLDKENVLRQFIADI 405 (412)
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 66666665533 3345555555555443
No 59
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.13 E-value=2.9e-08 Score=106.37 Aligned_cols=139 Identities=11% Similarity=-0.038 Sum_probs=89.4
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--------cCceEEEEcCCCCCCCCC------CCCceEE-EcCCCChhhh
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--------TGHRGIINKGWGGLGNLA------ESKDFVY-LLDNCPHDWL 438 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--------~~~~~Iv~~g~~~~~~l~------~~~~nv~-~~~~vP~~~l 438 (568)
.+.++++.|.+... +.+.+.+. +..++. .+.++++..++.....+. .+ +|+. +.+|+|.+++
T Consensus 231 ~~~vi~~~grl~~~K~~~~li~A-~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l-~~~~~~~g~~~~~~~ 308 (415)
T cd03816 231 RPALLVSSTSWTPDEDFGILLDA-LVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKL-KKVTIRTPWLSAEDY 308 (415)
T ss_pred CceEEEEeccccCCCCHHHHHHH-HHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCC-CcEEEEcCcCCHHHH
Confidence 34566677876543 33444443 333332 135666654332211111 12 3555 4579998777
Q ss_pred ---hccccEEEEe-------CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 439 ---FSRCLAVVHH-------GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 439 ---l~~~~~~I~H-------GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
|..+|++|.. |--+++.||+++|+|+|+... ......+++.+.|. .++ +.++|+++|..++
T Consensus 309 ~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~~~G~-lv~----d~~~la~~i~~ll 379 (415)
T cd03816 309 PKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELVKHGENGL-VFG----DSEELAEQLIDLL 379 (415)
T ss_pred HHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCCCCEE-EEC----CHHHHHHHHHHHH
Confidence 6999999841 124589999999999999643 35667788888897 552 7899999999999
Q ss_pred -C---HHHHHHHHHHHHHhh
Q 008369 509 -D---PKVKEHAVELAKAME 524 (568)
Q Consensus 509 -d---~~~r~~a~~la~~~~ 524 (568)
| ++.++++.+-+++..
T Consensus 380 ~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 380 SNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred hcCCCHHHHHHHHHHHHHhh
Confidence 8 777776666665555
No 60
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.12 E-value=2.5e-08 Score=104.89 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=98.4
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCCCCC-C----CCCCCCceEEEcCCCChhhh---hccc
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGWGGL-G----NLAESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~~-~----~l~~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
+.|+++++.... ..+-.+.+++|+... +.++++..+.... . ......+++.+.+.+++.++ +..+
T Consensus 198 ~~vl~~~hr~~~--~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~a 275 (365)
T TIGR00236 198 RYILLTLHRREN--VGEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANS 275 (365)
T ss_pred CEEEEecCchhh--hhhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhC
Confidence 455555543211 112244456666553 4666665433210 0 00123468999988876544 5999
Q ss_pred cEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 443 LAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 443 ~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
+++|+-.|. .+.||+++|+|+|+.+..++++. +...|.+. .++ -++++|+++|.+++ |++.++++.+...
T Consensus 276 d~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~-lv~---~d~~~i~~ai~~ll~~~~~~~~~~~~~~ 346 (365)
T TIGR00236 276 HLILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNK-LVG---TDKENITKAAKRLLTDPDEYKKMSNASN 346 (365)
T ss_pred CEEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceE-EeC---CCHHHHHHHHHHHHhChHHHHHhhhcCC
Confidence 999998874 47999999999999976666552 33367665 342 37899999999999 8888777665554
Q ss_pred HhhcCCcHHHHHHHHHHh
Q 008369 522 AMENEDGVTGAVKAFYKH 539 (568)
Q Consensus 522 ~~~~~~g~~~av~~i~~~ 539 (568)
.+.+.+.+++.++.++++
T Consensus 347 ~~g~~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 347 PYGDGEASERIVEELLNH 364 (365)
T ss_pred CCcCchHHHHHHHHHHhh
Confidence 454444457888877764
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.08 E-value=4e-09 Score=110.58 Aligned_cols=133 Identities=14% Similarity=0.062 Sum_probs=86.0
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHHcC---ceEEEEcCCCCCCCCC----CC---CceEEEcCCCChhhh---hcc
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEITG---HRGIINKGWGGLGNLA----ES---KDFVYLLDNCPHDWL---FSR 441 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~---~~~Iv~~g~~~~~~l~----~~---~~nv~~~~~vP~~~l---l~~ 441 (568)
++.|++.+|+.....+.+-.+.++++++... ..+++.........+. .. .+++.+.+..++..+ +..
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 277 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKN 277 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHc
Confidence 4567788888654333444555577776653 3343322211111111 11 468988887765544 688
Q ss_pred ccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 442 CLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 442 ~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
||+||+.+| |.+.|+++.|+|+|+++.. |. +..+.+.|++. .+. -+.+++.++|..++ ++..+.++
T Consensus 278 ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~g~~~-~~~---~~~~~i~~~i~~ll~~~~~~~~~ 344 (363)
T cd03786 278 ADLVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVESGTNV-LVG---TDPEAILAAIEKLLSDEFAYSLM 344 (363)
T ss_pred CcEEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhheeeEE-ecC---CCHHHHHHHHHHHhcCchhhhcC
Confidence 999999999 8888999999999998633 22 34456677776 332 15899999999999 66555443
No 62
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.08 E-value=2.1e-08 Score=103.75 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=90.2
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hccc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
++.+++..|++... ..+.+.+. +..+.. .+.++++..+......+ ....+++.+.+++|++++ +.++
T Consensus 201 ~~~~i~~~G~~~~~k~~~~l~~~-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (374)
T cd03817 201 DEPVLLYVGRLAKEKNIDFLIRA-FARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAA 279 (374)
T ss_pred CCeEEEEEeeeecccCHHHHHHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHc
Confidence 34566677776533 34444544 333433 34666665432221111 134679999999998776 6899
Q ss_pred cEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 008369 443 LAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAV 517 (568)
Q Consensus 443 ~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~ 517 (568)
|++|..+. .+++.||+++|+|+|+.+ ....+..+++.+.|. .++..+ . +++++|..++ +++.++...
T Consensus 280 d~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~~~~g~-~~~~~~--~-~~~~~i~~l~~~~~~~~~~~ 351 (374)
T cd03817 280 DLFVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVADGENGF-LFPPGD--E-ALAEALLRLLQDPELRRRLS 351 (374)
T ss_pred CEEEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheecCceeE-EeCCCC--H-HHHHHHHHHHhChHHHHHHH
Confidence 99996543 478999999999999975 344566777777787 554332 2 8999999999 776554444
Q ss_pred HHHHHh
Q 008369 518 ELAKAM 523 (568)
Q Consensus 518 ~la~~~ 523 (568)
+-++..
T Consensus 352 ~~~~~~ 357 (374)
T cd03817 352 KNAEES 357 (374)
T ss_pred HHHHHH
Confidence 444433
No 63
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.06 E-value=5.2e-08 Score=103.80 Aligned_cols=158 Identities=15% Similarity=0.118 Sum_probs=101.5
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHc-C--ceEEEEcCCCCCC-----CC------CCCCceEEEcCCCChhhh--
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEIT-G--HRGIINKGWGGLG-----NL------AESKDFVYLLDNCPHDWL-- 438 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~-~--~~~Iv~~g~~~~~-----~l------~~~~~nv~~~~~vP~~~l-- 438 (568)
+.+++.+|++... ..+.+.+.+....+.. + .++++..+..+.+ .+ ..+.++|.+.++++++++
T Consensus 219 ~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~ 298 (405)
T TIGR03449 219 TKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVH 298 (405)
T ss_pred CcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHH
Confidence 4677788887543 3344444422222221 2 5556655322111 11 124578999999998765
Q ss_pred -hccccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 008369 439 -FSRCLAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKV 512 (568)
Q Consensus 439 -l~~~~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~ 512 (568)
+..+|++|.- |...++.||+++|+|+|+.... .....+.+.+.|. .++ .-+.++++++|.+++ |++.
T Consensus 299 ~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~~~g~-~~~--~~d~~~la~~i~~~l~~~~~ 371 (405)
T TIGR03449 299 VYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADGETGL-LVD--GHDPADWADALARLLDDPRT 371 (405)
T ss_pred HHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccCCceE-ECC--CCCHHHHHHHHHHHHhCHHH
Confidence 7999999853 3336899999999999997543 3445666666776 454 347899999999999 8877
Q ss_pred HHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 513 KEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 513 r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
++++.+-+....+.-.++..++.+++.+
T Consensus 372 ~~~~~~~~~~~~~~fsw~~~~~~~~~~y 399 (405)
T TIGR03449 372 RIRMGAAAVEHAAGFSWAATADGLLSSY 399 (405)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7666665555544456666666666544
No 64
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.02 E-value=1.6e-07 Score=97.48 Aligned_cols=140 Identities=18% Similarity=0.139 Sum_probs=88.4
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCCC----------CCCCceEEEcCCCCh-hhhhcc
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGNL----------AESKDFVYLLDNCPH-DWLFSR 441 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~l----------~~~~~nv~~~~~vP~-~~ll~~ 441 (568)
..+++..|++... ..+.+.+. +..+.. .+.++++.......... ....++|.+.++.+. ..++..
T Consensus 185 ~~~i~~~Gr~~~~Kg~~~li~~-~~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ 263 (355)
T cd03819 185 KPVILLPGRLTRWKGQEVFIEA-LARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYAL 263 (355)
T ss_pred ceEEEEeeccccccCHHHHHHH-HHHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHHh
Confidence 4566777776543 34444444 555554 35666665433322111 034578999999543 334799
Q ss_pred ccEEEEeC----C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHHH
Q 008369 442 CLAVVHHG----G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML--DPKVKE 514 (568)
Q Consensus 442 ~~~~I~HG----G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL--d~~~r~ 514 (568)
+|++|+-. | .+++.||+++|+|+|+... ..+...+.+.+.|. .++ .-+.++++++|..++ +++.+.
T Consensus 264 ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~~~g~-~~~--~~~~~~l~~~i~~~~~~~~~~~~ 336 (355)
T cd03819 264 ADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPGETGL-LVP--PGDAEALAQALDQILSLLPEGRA 336 (355)
T ss_pred CCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCCCceE-EeC--CCCHHHHHHHHHHHHhhCHHHHH
Confidence 99999744 2 3699999999999998643 33455666666776 454 347899999996554 677666
Q ss_pred HHHHHHHHh
Q 008369 515 HAVELAKAM 523 (568)
Q Consensus 515 ~a~~la~~~ 523 (568)
++.+-+++.
T Consensus 337 ~~~~~a~~~ 345 (355)
T cd03819 337 KMFAKARMC 345 (355)
T ss_pred HHHHHHHHH
Confidence 555554443
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.01 E-value=1.5e-07 Score=97.58 Aligned_cols=138 Identities=19% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHHcC-ceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hccccE
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEITG-HRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRCLA 444 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~-~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~~~ 444 (568)
.+.+++..|++... +-.+.++++++... .++++...+.....+ ....+||.+.+++|++++ +..||+
T Consensus 190 ~~~~i~~~G~~~~~---K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~ 266 (357)
T cd03795 190 GRPFFLFVGRLVYY---KGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDV 266 (357)
T ss_pred CCcEEEEecccccc---cCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCE
Confidence 44677778886432 22334566666665 776665433221111 134579999999998764 688999
Q ss_pred EEEe-----CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 445 VVHH-----GG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHA-RGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 445 ~I~H-----GG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~-~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
+|.- .| ..++.||+++|+|+|+....+.. ..+.. .+.|. .++ .-+.++++++|..++ |++.++++
T Consensus 267 ~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~~~g~-~~~--~~d~~~~~~~i~~l~~~~~~~~~~ 339 (357)
T cd03795 267 FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHGVTGL-VVP--PGDPAALAEAIRRLLEDPELRERL 339 (357)
T ss_pred EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCCCceE-EeC--CCCHHHHHHHHHHHHHCHHHHHHH
Confidence 9832 23 35799999999999997655444 34443 66776 343 347899999999999 88766655
Q ss_pred HHHHHH
Q 008369 517 VELAKA 522 (568)
Q Consensus 517 ~~la~~ 522 (568)
++.+..
T Consensus 340 ~~~~~~ 345 (357)
T cd03795 340 GEAARE 345 (357)
T ss_pred HHHHHH
Confidence 554443
No 66
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.00 E-value=1.2e-07 Score=97.67 Aligned_cols=157 Identities=15% Similarity=0.105 Sum_probs=96.7
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hccc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
.+.+++..|+.... ..+.+.+. ++.+... +.++++.........+ ....+||.+.++++++++ +.+|
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~-~~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~a 279 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEA-LARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAA 279 (377)
T ss_pred CceEEEEeccCccccCHHHHHHH-HHHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhc
Confidence 45677777876532 33444443 3444332 4555544322221111 124679999999998766 6899
Q ss_pred cEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 008369 443 LAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAV 517 (568)
Q Consensus 443 ~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~ 517 (568)
|++|.. |..+++.||+++|+|+|+-+.. .....+.+.+.|. .++ .-+.++++++|..++ +++. +...
T Consensus 280 d~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~~~g~-~~~--~~~~~~l~~~i~~~~~~~~~-~~~~ 351 (377)
T cd03798 280 DVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDGENGL-LVP--PGDPEALAEAILRLLADPWL-RLGR 351 (377)
T ss_pred CeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCCccee-EEC--CCCHHHHHHHHHHHhcCcHH-HHhH
Confidence 999843 4568999999999999986543 3456677777776 444 447899999999999 7664 3333
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhC
Q 008369 518 ELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 518 ~la~~~~~~~g~~~av~~i~~~l 540 (568)
+..+.+.+.-..+..++.+.+.+
T Consensus 352 ~~~~~~~~~~s~~~~~~~~~~~~ 374 (377)
T cd03798 352 AARRRVAERFSWENVAERLLELY 374 (377)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444445555554443
No 67
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.97 E-value=6.2e-07 Score=92.67 Aligned_cols=153 Identities=18% Similarity=0.105 Sum_probs=99.9
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCC--------CCCCCCceEEEcCCCChhhh---hc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLG--------NLAESKDFVYLLDNCPHDWL---FS 440 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~--------~l~~~~~nv~~~~~vP~~~l---l~ 440 (568)
++.+++..|+.... ..+.+.+. +..+.. .+.++++........ ......++|.+.++++++++ +.
T Consensus 202 ~~~~i~~~G~~~~~K~~~~li~a-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~ 280 (375)
T cd03821 202 DKRIILFLGRLHPKKGLDLLIEA-FAKLAERFPDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALA 280 (375)
T ss_pred CCcEEEEEeCcchhcCHHHHHHH-HHHhhhhcCCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHh
Confidence 34667777876432 33333333 333333 245665554322110 01134689999999997665 68
Q ss_pred cccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHH
Q 008369 441 RCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEH 515 (568)
Q Consensus 441 ~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~ 515 (568)
.+|++|.-.- .+++.||+++|+|+|+.+. ......+.. +.|. ..+. +.++++++|..++ +++.+++
T Consensus 281 ~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~-~~~~-~~~~---~~~~~~~~i~~l~~~~~~~~~ 351 (375)
T cd03821 281 DADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY-GCGW-VVDD---DVDALAAALRRALELPQRLKA 351 (375)
T ss_pred hCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc-CceE-EeCC---ChHHHHHHHHHHHhCHHHHHH
Confidence 9999987543 4789999999999999753 345555655 7786 4432 4599999999999 8877777
Q ss_pred HHHHHHHh-hcCCcHHHHHHHHH
Q 008369 516 AVELAKAM-ENEDGVTGAVKAFY 537 (568)
Q Consensus 516 a~~la~~~-~~~~g~~~av~~i~ 537 (568)
+.+.+.+. .+.-.++..++.++
T Consensus 352 ~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 352 MGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHhcCHHHHHHHhh
Confidence 77666665 56667777776654
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.97 E-value=4.5e-07 Score=95.85 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=94.0
Q ss_pred CCcEEEeCCCCCC-CChHHHHHHHHHHHHH----cCceEEEEcCCCCC--------CCC-------CCCCceEEEcCCCC
Q 008369 375 EKPIYIGFGSLPV-EEPEKMTEIIVKALEI----TGHRGIINKGWGGL--------GNL-------AESKDFVYLLDNCP 434 (568)
Q Consensus 375 ~p~VyVsfGS~~~-~~~~~l~~~i~~al~~----~~~~~Iv~~g~~~~--------~~l-------~~~~~nv~~~~~vP 434 (568)
..++++..|+... ...+.+.+.+.+.... .+.++++..++... +.+ ....++|.+.+++|
T Consensus 210 ~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~ 289 (392)
T cd03805 210 GKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSIS 289 (392)
T ss_pred CceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCC
Confidence 3467777788654 3455555553222223 25666665443211 011 13457999999999
Q ss_pred hhhh---hccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 008369 435 HDWL---FSRCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFM 507 (568)
Q Consensus 435 ~~~l---l~~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~l 507 (568)
...+ +..+|+++.... ..++.||+++|+|+|+.-..+ ....+.+.+.|. .++ .+.++++++|..+
T Consensus 290 ~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~-~~~---~~~~~~a~~i~~l 361 (392)
T cd03805 290 DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGF-LCE---PTPEEFAEAMLKL 361 (392)
T ss_pred hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceE-EeC---CCHHHHHHHHHHH
Confidence 8754 699999996432 268899999999999975433 335566666776 443 2789999999999
Q ss_pred c-CHHHHHHHHHHHHH-hhcCCcHHHH
Q 008369 508 L-DPKVKEHAVELAKA-MENEDGVTGA 532 (568)
Q Consensus 508 L-d~~~r~~a~~la~~-~~~~~g~~~a 532 (568)
+ +++.+++..+-+.+ +.+.-..+..
T Consensus 362 ~~~~~~~~~~~~~a~~~~~~~~s~~~~ 388 (392)
T cd03805 362 ANDPDLADRMGAAGRKRVKEKFSTEAF 388 (392)
T ss_pred HhChHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9 77766655554443 2333344433
No 69
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.95 E-value=4.2e-07 Score=94.18 Aligned_cols=157 Identities=21% Similarity=0.216 Sum_probs=103.3
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCC-C--------C--CCCCceEEEcCC-CChhhh-
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLG-N--------L--AESKDFVYLLDN-CPHDWL- 438 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~-~--------l--~~~~~nv~~~~~-vP~~~l- 438 (568)
.+.+++.+|++... ..+.+.+. +..+... +.++++..+..... . . ....++|.+.+. +|++++
T Consensus 184 ~~~~i~~~G~~~~~K~~~~ll~a-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~ 262 (366)
T cd03822 184 GRPVLLTFGLLRPYKGLELLLEA-LPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELP 262 (366)
T ss_pred CCeEEEEEeeccCCCCHHHHHHH-HHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHH
Confidence 34566777776543 34445554 3334332 45555554322111 0 1 124578888865 987665
Q ss_pred --hccccEEEEe------CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C
Q 008369 439 --FSRCLAVVHH------GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-D 509 (568)
Q Consensus 439 --l~~~~~~I~H------GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d 509 (568)
+..+|++|.- |..+++.||+++|+|+|+.+..+ ...+...+.|. .++. -+.++++++|..++ |
T Consensus 263 ~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~-~~~~--~d~~~~~~~l~~l~~~ 334 (366)
T cd03822 263 ELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGL-LVPP--GDPAALAEAIRRLLAD 334 (366)
T ss_pred HHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcE-EEcC--CCHHHHHHHHHHHHcC
Confidence 6999999943 44568999999999999976544 34455567776 4443 35899999999999 7
Q ss_pred HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 510 PKVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 510 ~~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
++.+.+..+-+.....+-.++..++.+.+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 365 (366)
T cd03822 335 PELAQALRARAREYARAMSWERVAERYLRLL 365 (366)
T ss_pred hHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 7777777777666666678888888887764
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.92 E-value=3.3e-07 Score=98.53 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=80.0
Q ss_pred eEEEcCCCC-hhhhhccccEEEEe-----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHH
Q 008369 426 FVYLLDNCP-HDWLFSRCLAVVHH-----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDK 499 (568)
Q Consensus 426 nv~~~~~vP-~~~ll~~~~~~I~H-----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~ 499 (568)
+|++.+... ...++..+|+++.. +|..++.||+++|+|+|+-|..+++......+.+.|+++ . .-++++
T Consensus 303 ~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~-~----~~d~~~ 377 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAI-Q----VEDAED 377 (425)
T ss_pred cEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeE-E----ECCHHH
Confidence 344444322 23346999985442 344569999999999999999888888888877778776 2 226899
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhh-cCCcH-HHHHHHHHHhCCC
Q 008369 500 LVDAIRFML-DPKVKEHAVELAKAME-NEDGV-TGAVKAFYKHFPG 542 (568)
Q Consensus 500 L~~aI~~lL-d~~~r~~a~~la~~~~-~~~g~-~~av~~i~~~l~~ 542 (568)
|+++|..++ |++.++++.+.+.... +..|+ ++.++.+.+.+..
T Consensus 378 La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 378 LAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEPYLPP 423 (425)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhccc
Confidence 999999999 8888777776665544 33444 7888888776654
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.90 E-value=3.8e-07 Score=97.11 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=90.8
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hccc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRC 442 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~ 442 (568)
.+.+++..|.+... ..+.+.+. +..+.+ .+.++++...+...+.+ ....++|.+.+++|++++ ++.+
T Consensus 192 ~~~~i~~~grl~~~Kg~~~li~a-~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~a 270 (398)
T cd03796 192 DKITIVVISRLVYRKGIDLLVGI-IPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQG 270 (398)
T ss_pred CceEEEEEeccchhcCHHHHHHH-HHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhC
Confidence 34677777877432 33444444 333332 24565555432211111 124578999999998776 6999
Q ss_pred cEEEEeC---Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHH----
Q 008369 443 LAVVHHG---GA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVK---- 513 (568)
Q Consensus 443 ~~~I~HG---G~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r---- 513 (568)
|++|.-. |. .++.||+++|+|+|+.+..+ ....+.+ |.+. ..+ -+.++++++|.+++ +....
T Consensus 271 d~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~-~~~~-~~~---~~~~~l~~~l~~~l~~~~~~~~~~ 341 (398)
T cd03796 271 HIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP-DMIL-LAE---PDVESIVRKLEEAISILRTGKHDP 341 (398)
T ss_pred CEEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC-Ccee-ecC---CCHHHHHHHHHHHHhChhhhhhHH
Confidence 9998643 33 49999999999999976543 2334443 3333 222 26899999999998 53222
Q ss_pred HHHH-HHHHHhhcCCcHHHHHHHHHHhCCC
Q 008369 514 EHAV-ELAKAMENEDGVTGAVKAFYKHFPG 542 (568)
Q Consensus 514 ~~a~-~la~~~~~~~g~~~av~~i~~~l~~ 542 (568)
++++ .+.+.+.-+..+++..+.+++.+..
T Consensus 342 ~~~~~~~~~~fs~~~~~~~~~~~y~~l~~~ 371 (398)
T cd03796 342 WSFHNRVKKMYSWEDVAKRTEKVYDRILQT 371 (398)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHhcC
Confidence 2222 1223333334445555555555543
No 72
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.89 E-value=2.6e-08 Score=103.06 Aligned_cols=180 Identities=16% Similarity=0.087 Sum_probs=111.4
Q ss_pred CCCceEecceeccCCCCCCCChhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcC---ceEEEEcCCCCCCCC
Q 008369 344 GPKIDVVGFCFLDLASTYEPPDSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITG---HRGIINKGWGGLGNL 420 (568)
Q Consensus 344 ~~~v~~vGpl~~~~~~~~~~~~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~---~~~Iv~~g~~~~~~l 420 (568)
+.++.+||-.+.+.... .+.. ++ ..++|.+--||-... ...+...++++.+... ..+++.. ..+.+.+
T Consensus 143 g~~~~~VGhPl~d~~~~--~~~~----~~-~~~~I~llPGSR~~E-i~~llP~~~~aa~~L~~~~~~~~i~~-a~~~~~i 213 (347)
T PRK14089 143 QSKATYVGHPLLDEIKE--FKKD----LD-KEGTIAFMPGSRKSE-IKRLMPIFKELAKKLEGKEKILVVPS-FFKGKDL 213 (347)
T ss_pred CCCCEEECCcHHHhhhh--hhhh----cC-CCCEEEEECCCCHHH-HHHHHHHHHHHHHHHhhcCcEEEEeC-CCcHHHH
Confidence 35677888444432110 0111 22 236888999996532 2245554456655442 3344432 2221111
Q ss_pred CC-C--CceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCC--CChhHHHHHHH---HcCCCCCCC--
Q 008369 421 AE-S--KDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFF--GDQPFWGERVH---ARGLGPAPI-- 490 (568)
Q Consensus 421 ~~-~--~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~--~DQ~~na~~v~---~~G~G~~~i-- 490 (568)
.+ . ...+.+.+ ...+++..||++|+.+|..|+ |++.+|+|+|+ ++- .-|++||+++. ..|+.- .+
T Consensus 214 ~~~~~~~~~~~~~~--~~~~~m~~aDlal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~igL~N-ii~~ 288 (347)
T PRK14089 214 KEIYGDISEFEISY--DTHKALLEAEFAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHIGLAN-IFFD 288 (347)
T ss_pred HHHHhcCCCcEEec--cHHHHHHhhhHHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCeeehHH-HhcC
Confidence 11 0 01333333 334578999999999999888 99999999999 443 45889999998 555543 23
Q ss_pred -----------CCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 491 -----------PVEEFSLDKLVDAIRFMLDPKVKEHAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 491 -----------~~~~lt~e~L~~aI~~lLd~~~r~~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
-.++.|++.|++++...-..+.++...++.+.+. .++.+++++.+.+
T Consensus 289 ~~~~~~vvPEllQ~~~t~~~la~~i~~~~~~~~~~~~~~l~~~l~-~~a~~~~A~~i~~ 346 (347)
T PRK14089 289 FLGKEPLHPELLQEFVTVENLLKAYKEMDREKFFKKSKELREYLK-HGSAKNVAKILKE 346 (347)
T ss_pred CCcccccCchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHhc
Confidence 3467999999999988324567777777777774 3677888887754
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.87 E-value=2.1e-07 Score=95.84 Aligned_cols=147 Identities=10% Similarity=0.012 Sum_probs=92.3
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCC----CC---CCceEEEcCCCChhhh---hccccEEE
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNL----AE---SKDFVYLLDNCPHDWL---FSRCLAVV 446 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l----~~---~~~nv~~~~~vP~~~l---l~~~~~~I 446 (568)
.+.+..|...... -.+.++++++..+.++++.......... .. ..++|.+.++++++++ ++.+|++|
T Consensus 172 ~~i~~~Gr~~~~K---g~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v 248 (335)
T cd03802 172 DYLLFLGRISPEK---GPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALL 248 (335)
T ss_pred CEEEEEEeecccc---CHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEE
Confidence 3445556663322 2233577788888888776543321111 11 3579999999998765 68999998
Q ss_pred Ee----CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH
Q 008369 447 HH----GG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELA 520 (568)
Q Consensus 447 ~H----GG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la 520 (568)
.- -| ..++.||+++|+|+|+.... .+...+.+...|. .++. .++++++|..++ .+ ++++++.
T Consensus 249 ~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~~~g~-l~~~----~~~l~~~l~~l~~~~--~~~~~~~- 316 (335)
T cd03802 249 FPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDGVTGF-LVDS----VEELAAAVARADRLD--RAACRRR- 316 (335)
T ss_pred eCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCCCcEE-EeCC----HHHHHHHHHHHhccH--HHHHHHH-
Confidence 53 23 35899999999999987543 3334555545676 4432 899999999987 33 2333332
Q ss_pred HHhhcCCcHHHHHHHHHHhC
Q 008369 521 KAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 521 ~~~~~~~g~~~av~~i~~~l 540 (568)
..+.-..+..++.+++.+
T Consensus 317 --~~~~~s~~~~~~~~~~~y 334 (335)
T cd03802 317 --AERRFSAARMVDDYLALY 334 (335)
T ss_pred --HHHhCCHHHHHHHHHHHh
Confidence 234455666666666543
No 74
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.87 E-value=1.2e-06 Score=91.04 Aligned_cols=150 Identities=13% Similarity=0.129 Sum_probs=93.2
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHc--CceEEEEcCCCCCCC-------CCCCCceEEEcCCCChhhh---hccccE
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEIT--GHRGIINKGWGGLGN-------LAESKDFVYLLDNCPHDWL---FSRCLA 444 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~-------l~~~~~nv~~~~~vP~~~l---l~~~~~ 444 (568)
..++..|++..... .+.+++|++.. +.++++..+...... .....++|.+.++++++++ +..+|+
T Consensus 194 ~~i~~~G~~~~~Kg---~~~li~a~~~l~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 270 (363)
T cd04955 194 RYYLLVGRIVPENN---IDDLIEAFSKSNSGKKLVIVGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAAL 270 (363)
T ss_pred cEEEEEecccccCC---HHHHHHHHHhhccCceEEEEcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCE
Confidence 34456787753221 23345666554 467666654322111 1134679999999998765 588888
Q ss_pred EEEeCCh-----hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 445 VVHHGGA-----GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 445 ~I~HGG~-----gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
++.+.-. +++.|||++|+|+|+....+. ...++..|... +.. +.++++|..++ |++.+.+..+
T Consensus 271 ~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~~g~~~---~~~----~~l~~~i~~l~~~~~~~~~~~~ 339 (363)
T cd04955 271 FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGDKAIYF---KVG----DDLASLLEELEADPEEVSAMAK 339 (363)
T ss_pred EEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecCCeeEe---cCc----hHHHHHHHHHHhCHHHHHHHHH
Confidence 8876544 589999999999999754432 22233333332 211 22999999999 8776666555
Q ss_pred HHHHh-hcCCcHHHHHHHHHHhC
Q 008369 519 LAKAM-ENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 519 la~~~-~~~~g~~~av~~i~~~l 540 (568)
.+... .+.-.++..++.+++.+
T Consensus 340 ~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 340 AARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 55543 33467788888777654
No 75
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.85 E-value=3.5e-07 Score=94.79 Aligned_cols=153 Identities=19% Similarity=0.200 Sum_probs=98.8
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHcC--ceEEEEcCCCCCCC-C------CCCCceEEEcCCCChhhh---hcc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEITG--HRGIINKGWGGLGN-L------AESKDFVYLLDNCPHDWL---FSR 441 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~~--~~~Iv~~g~~~~~~-l------~~~~~nv~~~~~vP~~~l---l~~ 441 (568)
.+.+.+..|+.... ..+.+.+. +..+...+ .++++......... . ....++|.+.+++|+.++ +..
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~-~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ 272 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEA-FARLPAKGPDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRG 272 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHH-HHHHHHhcCCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhh
Confidence 34566677877543 34444444 34444332 56665543322111 1 235689999999998766 689
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 442 CLAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 442 ~~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
+|++|.- |..+++.||+++|+|+|+....+ ....+.+.|.. ++ .-+.++++++|..++ |++.+.++
T Consensus 273 ~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~~~~~---~~--~~~~~~~~~~i~~l~~~~~~~~~~ 343 (365)
T cd03809 273 ARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGDAALY---FD--PLDPEALAAAIERLLEDPALREEL 343 (365)
T ss_pred hhhhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecCceee---eC--CCCHHHHHHHHHHHhcCHHHHHHH
Confidence 9998754 33468999999999999865422 12223333333 22 337899999999988 89988888
Q ss_pred HHHHHHhhcCCcHHHHHHHHH
Q 008369 517 VELAKAMENEDGVTGAVKAFY 537 (568)
Q Consensus 517 ~~la~~~~~~~g~~~av~~i~ 537 (568)
.+.+......-.++..++.+.
T Consensus 344 ~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 344 RERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHHhCCHHHHHHHHh
Confidence 877776666677777766553
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.85 E-value=5.8e-07 Score=93.31 Aligned_cols=156 Identities=13% Similarity=0.080 Sum_probs=99.3
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhccccE
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSRCLA 444 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~~~~ 444 (568)
.+.+++..|++... ..+.+++. +..+... +.++++..++.....+ ....+|+.+.++..+ ..++..+|+
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a-~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~ 265 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKA-FAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYYNAADL 265 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHH-HHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHHHhhce
Confidence 34677777876432 33334443 2222222 4677665433221111 124578999998754 345799999
Q ss_pred EEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHHHHHHHHH
Q 008369 445 VVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML--DPKVKEHAVE 518 (568)
Q Consensus 445 ~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL--d~~~r~~a~~ 518 (568)
+|.-.. .+++.||+++|+|+|+. |...+...+++.|... + .-+.++++++|.+++ +++.++.+.+
T Consensus 266 ~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~g~~~---~--~~~~~~~~~~i~~ll~~~~~~~~~~~~ 336 (360)
T cd04951 266 FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDSGLIV---P--ISDPEALANKIDEILKMSGEERDIIGA 336 (360)
T ss_pred EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCCceEe---C--CCCHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 987643 57899999999999985 3445556666645443 2 347899999999997 5666665555
Q ss_pred HHHHhhcCCcHHHHHHHHHHhC
Q 008369 519 LAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 519 la~~~~~~~g~~~av~~i~~~l 540 (568)
..+.+.+.-..+..++.+++.+
T Consensus 337 ~~~~~~~~~s~~~~~~~~~~~y 358 (360)
T cd04951 337 RRERIVKKFSINSIVQQWLTLY 358 (360)
T ss_pred HHHHHHHhcCHHHHHHHHHHHh
Confidence 5555666677777877777665
No 77
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.81 E-value=1.3e-05 Score=86.49 Aligned_cols=111 Identities=11% Similarity=-0.022 Sum_probs=82.4
Q ss_pred CCceEEEcCCCChhhh---hccc----cEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRC----LAVVHHG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIP 491 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~----~~~I~HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~ 491 (568)
+.++|.+.++++++++ +..+ |+||... | ..+++||+++|+|+|+.... .+...+.+...|. .++
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~~~G~-lv~ 389 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANCRNGL-LVD 389 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCCCcEE-EeC
Confidence 4678999999988776 5554 8998754 3 36999999999999997543 3456666666776 555
Q ss_pred CCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhC
Q 008369 492 VEEFSLDKLVDAIRFML-DPKVKEHAVELAKA-MENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 492 ~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~-~~~~~g~~~av~~i~~~l 540 (568)
. -++++|+++|.+++ |++.+++..+-+.. +.+.-.++..++.+++++
T Consensus 390 ~--~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 V--LDLEAIASALEDALSDSSQWQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred C--CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3 36899999999999 88776666555543 445568888888888765
No 78
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.81 E-value=1.7e-06 Score=92.74 Aligned_cols=152 Identities=14% Similarity=-0.032 Sum_probs=95.2
Q ss_pred EEEeCCCCCCCChHHHHHHHHHHHHH-----cCceEEEEcCCCCCCCCC----CCC-ceEEEcCCCChhhhhccccEEEE
Q 008369 378 IYIGFGSLPVEEPEKMTEIIVKALEI-----TGHRGIINKGWGGLGNLA----ESK-DFVYLLDNCPHDWLFSRCLAVVH 447 (568)
Q Consensus 378 VyVsfGS~~~~~~~~l~~~i~~al~~-----~~~~~Iv~~g~~~~~~l~----~~~-~nv~~~~~vP~~~ll~~~~~~I~ 447 (568)
+.+..|.+.... -.+.+++|++. .+.+++++..+...+.++ +.+ ...++.++...+.++..+|+||.
T Consensus 230 ~~l~vGRL~~eK---~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~~DvFv~ 306 (462)
T PLN02846 230 GAYYIGKMVWSK---GYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHDYKVFLN 306 (462)
T ss_pred EEEEEecCcccC---CHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHhCCEEEE
Confidence 455667765432 23333455442 245566554333322221 111 12346777777778999999998
Q ss_pred eCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 008369 448 HGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKA 522 (568)
Q Consensus 448 HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~ 522 (568)
-+- .++++|||++|+|+|+....+ + ..+.+.+.|. .. -+.++++++|..+| ++.... +..
T Consensus 307 pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~-~~----~~~~~~a~ai~~~l~~~~~~~-----~~~ 371 (462)
T PLN02846 307 PSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCR-TY----DDGKGFVRATLKALAEEPAPL-----TDA 371 (462)
T ss_pred CCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceE-ec----CCHHHHHHHHHHHHccCchhH-----HHH
Confidence 854 489999999999999985443 2 4555556665 33 26889999999998 432111 111
Q ss_pred hhcCCcHHHHHHHHHHhCCCCCCCC
Q 008369 523 MENEDGVTGAVKAFYKHFPGKKSES 547 (568)
Q Consensus 523 ~~~~~g~~~av~~i~~~l~~~~~~~ 547 (568)
.+..-.++.+++.+.+++..++...
T Consensus 372 a~~~~SWe~~~~~l~~~~~~~~~~~ 396 (462)
T PLN02846 372 QRHELSWEAATERFLRVADLDLPSS 396 (462)
T ss_pred HHHhCCHHHHHHHHHHHhccCCcCc
Confidence 2236788999999999998876643
No 79
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.81 E-value=4.3e-07 Score=94.06 Aligned_cols=138 Identities=20% Similarity=0.138 Sum_probs=87.8
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hcccc
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRCL 443 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~~ 443 (568)
+.+++.+|+.... ..+.+.+. ++.+... +.++++..++.....+ ...++||.+.+++|++++ +.++|
T Consensus 179 ~~~i~~~g~~~~~k~~~~l~~~-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad 257 (355)
T cd03799 179 PLRILSVGRLVEKKGLDYLLEA-LALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAAD 257 (355)
T ss_pred CeEEEEEeeeccccCHHHHHHH-HHHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCC
Confidence 4566677776432 33444443 3444332 4555554432221111 124689999999997766 58999
Q ss_pred EEEE----------eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHH
Q 008369 444 AVVH----------HGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKV 512 (568)
Q Consensus 444 ~~I~----------HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~ 512 (568)
++|. -|.-+++.||+++|+|+|+.+..+ ....+++...|. .++ .-+.++++++|..++ |++.
T Consensus 258 i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~-~~~--~~~~~~l~~~i~~~~~~~~~ 330 (355)
T cd03799 258 LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL-LVP--PGDPEALADAIERLLDDPEL 330 (355)
T ss_pred EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE-EeC--CCCHHHHHHHHHHHHhCHHH
Confidence 9988 344579999999999999876432 234555555776 443 337899999999999 8776
Q ss_pred HHHHHHHHH
Q 008369 513 KEHAVELAK 521 (568)
Q Consensus 513 r~~a~~la~ 521 (568)
+.++.+.+.
T Consensus 331 ~~~~~~~a~ 339 (355)
T cd03799 331 RREMGEAGR 339 (355)
T ss_pred HHHHHHHHH
Confidence 555554443
No 80
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.80 E-value=7.5e-06 Score=86.26 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=98.0
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCC--------CC---CCCCceEEEcCCC--Chhhh-
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLG--------NL---AESKDFVYLLDNC--PHDWL- 438 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~--------~l---~~~~~nv~~~~~v--P~~~l- 438 (568)
..+++..|.+... ..+.+++. +..+.. .+.++++..++...+ .+ ....+++.+.++. +...+
T Consensus 190 ~~~i~~vgrl~~~Kg~~~ll~a-~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 190 RPYITQVSRFDPWKDPFGVIDA-YRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred CcEEEEEeccccccCcHHHHHH-HHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 3667777887543 34444444 333322 256666655432210 10 1245678888886 55443
Q ss_pred --hccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 008369 439 --FSRCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPK 511 (568)
Q Consensus 439 --l~~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~ 511 (568)
+..+|+||.-.. ..++.||+++|+|+|+....+ ....+.+.+.|. .++ +.+.++++|..++ |++
T Consensus 269 ~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~-~~~----~~~~~a~~i~~ll~~~~ 339 (372)
T cd03792 269 ALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGF-LVD----TVEEAAVRILYLLRDPE 339 (372)
T ss_pred HHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceE-EeC----CcHHHHHHHHHHHcCHH
Confidence 699999997543 359999999999999875433 334555566676 443 4578889999999 888
Q ss_pred HHHHHHHHHHHh-hcCCcHHHHHHHHHHhC
Q 008369 512 VKEHAVELAKAM-ENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 512 ~r~~a~~la~~~-~~~~g~~~av~~i~~~l 540 (568)
.++.+.+-+... .+.-.++..++.+.+.+
T Consensus 340 ~~~~~~~~a~~~~~~~~s~~~~~~~~~~~~ 369 (372)
T cd03792 340 LRRKMGANAREHVRENFLITRHLKDYLYLI 369 (372)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 777766666554 44567777777766654
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.78 E-value=2.9e-06 Score=87.21 Aligned_cols=155 Identities=17% Similarity=0.120 Sum_probs=95.4
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHH--cCceEEEEcCCCCCCC-------CCCCCceEEEcCCCCh-hhhhccccE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEI--TGHRGIINKGWGGLGN-------LAESKDFVYLLDNCPH-DWLFSRCLA 444 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~-------l~~~~~nv~~~~~vP~-~~ll~~~~~ 444 (568)
+.+++.+|+.... ..+.+.+. +..+.. .+.++++......... .....+++.+.+.... ..++..+|+
T Consensus 193 ~~~i~~~G~~~~~K~~~~li~a-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 271 (365)
T cd03807 193 TFLIGIVARLHPQKDHATLLRA-AALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALLNALDV 271 (365)
T ss_pred CeEEEEecccchhcCHHHHHHH-HHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHHHhCCE
Confidence 4566777876532 33334433 222222 2466666543222111 1134578888886543 345799999
Q ss_pred EEEeCCh----hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 008369 445 VVHHGGA----GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVEL 519 (568)
Q Consensus 445 ~I~HGG~----gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~l 519 (568)
+|..+.. +++.||+++|+|+|+.. ...+...+.+ .|. .++ .-+.++++++|..++ |++.+....+.
T Consensus 272 ~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~--~g~-~~~--~~~~~~l~~~i~~l~~~~~~~~~~~~~ 342 (365)
T cd03807 272 FVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD--TGF-LVP--PGDPEALAEAIEALLADPALRQALGEA 342 (365)
T ss_pred EEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc--CCE-EeC--CCCHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9976554 89999999999999854 3345555555 444 333 336899999999999 77655544444
Q ss_pred HH-HhhcCCcHHHHHHHHHHhC
Q 008369 520 AK-AMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 520 a~-~~~~~~g~~~av~~i~~~l 540 (568)
+. .+.+.-..+..++.+.+.+
T Consensus 343 ~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 343 ARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 43 3445567777777777654
No 82
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=6.5e-07 Score=93.55 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=79.6
Q ss_pred CCceEEEcCCCChhhh---hccccEEEEeC----------ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRCLAVVHHG----------GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAP 489 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~~~~I~HG----------G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~ 489 (568)
..++|.+.+++|++++ +..+|++|..+ -.+++.||+++|+|+|+-+..+ +...+.+.+.|. .
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~-~ 317 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGL-L 317 (367)
T ss_pred CCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeE-E
Confidence 4688999999998776 69999998633 3579999999999999876543 566677777887 5
Q ss_pred CCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHH
Q 008369 490 IPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKA-MENEDGVTGAVKAFY 537 (568)
Q Consensus 490 i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~-~~~~~g~~~av~~i~ 537 (568)
++ .-+.++++++|.+++ |++.++++.+-+.. +.+.-.++..++.++
T Consensus 318 ~~--~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 318 VP--EGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred EC--CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 54 347899999999999 88766655554443 334455666665554
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.76 E-value=2.7e-06 Score=86.82 Aligned_cols=137 Identities=17% Similarity=0.101 Sum_probs=84.6
Q ss_pred CCCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhcccc
Q 008369 374 GEKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSRCL 443 (568)
Q Consensus 374 ~~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~~~ 443 (568)
..+.+++..|+.... ..+.+.+. ++.+... +.++++..+....... ....+++.+.++.+. ..++..+|
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~-~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d 265 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRA-FALLRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQSNPYPYLKAAD 265 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHH-HHHhhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHHHhCC
Confidence 345677777886532 23333332 3333332 4666665432221111 124578999999764 34579999
Q ss_pred EEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH---HHHHHHhc-CHHHHHH
Q 008369 444 AVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKL---VDAIRFML-DPKVKEH 515 (568)
Q Consensus 444 ~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L---~~aI~~lL-d~~~r~~ 515 (568)
++|.- |..+++.||+++|+|+|+... ......+.+.+.|. .++ .-+.+.+ .++|..++ +++.+.+
T Consensus 266 ~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~~~~g~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 338 (353)
T cd03811 266 LFVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILEDGENGL-LVP--VGDEAALAAAALALLDLLLDPELRER 338 (353)
T ss_pred EEEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcCCCceE-EEC--CCCHHHHHHHHHHHHhccCChHHHHH
Confidence 99954 335789999999999998643 35567778888887 454 3356777 66666666 6666555
Q ss_pred HHH
Q 008369 516 AVE 518 (568)
Q Consensus 516 a~~ 518 (568)
+++
T Consensus 339 ~~~ 341 (353)
T cd03811 339 LAA 341 (353)
T ss_pred HHH
Confidence 554
No 84
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.73 E-value=3e-06 Score=88.09 Aligned_cols=136 Identities=10% Similarity=-0.013 Sum_probs=84.1
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhccccE
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSRCLA 444 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~~~~ 444 (568)
.+++.+..|++... ..+.+.+. +..+... +.++++.........+ ....++|.+.++..+ ..++..||+
T Consensus 191 ~~~~i~~vGr~~~~Kg~~~li~a-~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi 269 (358)
T cd03812 191 DKFVIGHVGRFSEQKNHEFLIEI-FAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELLQAMDV 269 (358)
T ss_pred CCEEEEEEeccccccChHHHHHH-HHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHHHhcCE
Confidence 34666777776532 23333333 3333332 4566655422211111 134678999998433 345799999
Q ss_pred EEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHH
Q 008369 445 VVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVEL 519 (568)
Q Consensus 445 ~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~l 519 (568)
+|+- |-.++++|||++|+|+|+....+ ....+.+ +.|. ... .-++++++++|.+++ |++.+++....
T Consensus 270 ~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~-~~~~-~~~--~~~~~~~a~~i~~l~~~~~~~~~~~~~ 341 (358)
T cd03812 270 FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD-LVKF-LSL--DESPEIWAEEILKLKSEDRRERSSESI 341 (358)
T ss_pred EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc-CccE-EeC--CCCHHHHHHHHHHHHhCcchhhhhhhh
Confidence 9975 34589999999999999875544 3344555 5554 222 335799999999999 88766655443
No 85
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.73 E-value=3e-07 Score=96.52 Aligned_cols=157 Identities=9% Similarity=0.050 Sum_probs=97.7
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh--hhh---hccc
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH--DWL---FSRC 442 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~--~~l---l~~~ 442 (568)
+.+++..|.+.....+.+ ..+++++... +.++++...+...+.+ ..++++|.+.+++++ +.+ +..+
T Consensus 180 ~~~i~~~Grl~~~~~k~~-~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~ 258 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNV-KELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNV 258 (359)
T ss_pred CcEEEEEEEEecccCcCH-HHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcC
Confidence 456667777532111222 2235565544 4566665433321111 134679999999854 443 5678
Q ss_pred cEEEEeCC----hhHHHHHHHhCCCEEeec-CCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHH--HHH
Q 008369 443 LAVVHHGG----AGTTAAGLKAACPTTIVP-FFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPK--VKE 514 (568)
Q Consensus 443 ~~~I~HGG----~gT~~EaL~~GvP~vivP-~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~--~r~ 514 (568)
|++|...- ..++.||+++|+|+|+.. ..+ ....+++...|. .++ .-+.++++++|..++ |++ ...
T Consensus 259 d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~-lv~--~~d~~~la~~i~~l~~~~~~~~~~ 331 (359)
T PRK09922 259 SALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGE-LYT--PGNIDEFVGKLNKVISGEVKYQHD 331 (359)
T ss_pred cEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceE-EEC--CCCHHHHHHHHHHHHhCcccCCHH
Confidence 99997533 589999999999999875 332 334566666676 454 348899999999999 776 345
Q ss_pred HHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 515 HAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 515 ~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+..+..+.+..+.-..+.++.+++.+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 332 AIPNSIERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 55555555655555566666665543
No 86
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.70 E-value=1.7e-05 Score=83.65 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=96.0
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC--------CCC---CceEEE-cCCCChhhh---
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL--------AES---KDFVYL-LDNCPHDWL--- 438 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l--------~~~---~~nv~~-~~~vP~~~l--- 438 (568)
.++++..|..... +-.+.+++|++.. +.++++..+..+.... ... ..++.+ .++++++++
T Consensus 201 ~~~i~~~Grl~~~---Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 277 (388)
T TIGR02149 201 RPYILFVGRITRQ---KGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVEL 277 (388)
T ss_pred ceEEEEEcccccc---cCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHH
Confidence 3566677876542 2233345555543 4566655443321111 011 234554 468887766
Q ss_pred hccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC----HHHHHHHHHHhc-C
Q 008369 439 FSRCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFS----LDKLVDAIRFML-D 509 (568)
Q Consensus 439 l~~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt----~e~L~~aI~~lL-d 509 (568)
+..+|++|+-. ...++.||+++|+|+|+... ......++..+.|. .++..+.+ .+.++++|.+++ |
T Consensus 278 ~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~~~G~-~~~~~~~~~~~~~~~l~~~i~~l~~~ 352 (388)
T TIGR02149 278 LSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDGETGF-LVPPDNSDADGFQAELAKAINILLAD 352 (388)
T ss_pred HHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCCCceE-EcCCCCCcccchHHHHHHHHHHHHhC
Confidence 69999999742 23678999999999999754 34556677777787 56544332 288999999998 8
Q ss_pred HHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhC
Q 008369 510 PKVKEHAVELAKA-MENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 510 ~~~r~~a~~la~~-~~~~~g~~~av~~i~~~l 540 (568)
++.++++.+-+.+ ..+.-.++..++.+.+.+
T Consensus 353 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~y 384 (388)
T TIGR02149 353 PELAKKMGIAGRKRAEEEFSWGSIAKKTVEMY 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 8776665555444 334456666666655543
No 87
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.69 E-value=3.6e-05 Score=80.95 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=96.6
Q ss_pred CCcEEEeCCCCCCC-ChHHHHHHHHHHHHHc-----CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhcc
Q 008369 375 EKPIYIGFGSLPVE-EPEKMTEIIVKALEIT-----GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSR 441 (568)
Q Consensus 375 ~p~VyVsfGS~~~~-~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~ 441 (568)
.+.+.+..|.+... ....+.+.+.+.++.. +.++++...+...+.+ ....+++.+.++..+ ..++..
T Consensus 193 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 272 (374)
T TIGR03088 193 ESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALMQA 272 (374)
T ss_pred CCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHHHh
Confidence 35677788887543 3444444422222222 3566655432221111 124567888886543 345799
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 442 CLAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 442 ~~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
+|++|.- |-.+++.||+++|+|+|+-... .+...+++...|. .++ .-+.++++++|..++ |++.+...
T Consensus 273 adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~~~g~-~~~--~~d~~~la~~i~~l~~~~~~~~~~ 345 (374)
T TIGR03088 273 LDLFVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHGVTGA-LVP--PGDAVALARALQPYVSDPAARRAH 345 (374)
T ss_pred cCEEEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCCCceE-EeC--CCCHHHHHHHHHHHHhCHHHHHHH
Confidence 9999943 3457999999999999997643 3455666666676 454 346899999999999 87766555
Q ss_pred HHHHHH-hhcCCcHHHHHHHHHHhC
Q 008369 517 VELAKA-MENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 517 ~~la~~-~~~~~g~~~av~~i~~~l 540 (568)
.+-++. +.+.-.++..++.+++..
T Consensus 346 ~~~a~~~~~~~fs~~~~~~~~~~~y 370 (374)
T TIGR03088 346 GAAGRARAEQQFSINAMVAAYAGLY 370 (374)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444433 334456666666655543
No 88
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.60 E-value=3.9e-05 Score=88.73 Aligned_cols=164 Identities=10% Similarity=0.048 Sum_probs=102.0
Q ss_pred hhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcC-----ceEEEEcCCCC-CCC-----------C------CC
Q 008369 366 SLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITG-----HRGIINKGWGG-LGN-----------L------AE 422 (568)
Q Consensus 366 ~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~-----~~~Iv~~g~~~-~~~-----------l------~~ 422 (568)
++..|+.....++++..|.+... +-...+++|+..+. ..+.+..|..+ ... + ..
T Consensus 469 ~l~r~~~~pdkpvIL~VGRL~p~---KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lg 545 (1050)
T TIGR02468 469 EIMRFFTNPRKPMILALARPDPK---KNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYD 545 (1050)
T ss_pred HHHhhcccCCCcEEEEEcCCccc---cCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHHHhC
Confidence 45666655555677777887532 22333456654431 12322233321 110 0 12
Q ss_pred CCceEEEcCCCChhhh---hccc----cEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRC----LAVVHHG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIP 491 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~----~~~I~HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~ 491 (568)
+.++|.+.+++++.++ +..+ |+||.-. | ..++.||+++|+|+|+-...+ ....++....|. .++
T Consensus 546 L~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGl-LVd 620 (1050)
T TIGR02468 546 LYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGL-LVD 620 (1050)
T ss_pred CCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEE-EEC
Confidence 4578999999998776 5555 6888753 2 379999999999999986433 334555555676 555
Q ss_pred CCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 008369 492 VEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENEDGVTGAVKAFYKH 539 (568)
Q Consensus 492 ~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~~ 539 (568)
.-+++.|+++|..++ |++.++++.+-+.+....-.++..++.+.+.
T Consensus 621 --P~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl~~ 667 (1050)
T TIGR02468 621 --PHDQQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYLSR 667 (1050)
T ss_pred --CCCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 347899999999999 8887776666655444445665555555444
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.59 E-value=6.2e-06 Score=86.99 Aligned_cols=75 Identities=16% Similarity=0.062 Sum_probs=56.9
Q ss_pred ceEEEcC-CCChhhh---hccccEEEEe------CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC
Q 008369 425 DFVYLLD-NCPHDWL---FSRCLAVVHH------GG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVE 493 (568)
Q Consensus 425 ~nv~~~~-~vP~~~l---l~~~~~~I~H------GG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~ 493 (568)
+|+.+.+ |+|++++ +..+|++|.. -| -+++.||+++|+|+|+... ..+...+++.+.|. .++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g~~G~-lv~-- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDGKNGL-LFS-- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCCCCeE-EEC--
Confidence 4566654 7998877 7999999841 12 3689999999999999753 23667777888898 554
Q ss_pred CCCHHHHHHHHHHhc
Q 008369 494 EFSLDKLVDAIRFML 508 (568)
Q Consensus 494 ~lt~e~L~~aI~~lL 508 (568)
++++|+++|.++|
T Consensus 359 --~~~~la~~i~~l~ 371 (371)
T PLN02275 359 --SSSELADQLLELL 371 (371)
T ss_pred --CHHHHHHHHHHhC
Confidence 4899999998875
No 90
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.48 E-value=1.9e-05 Score=83.02 Aligned_cols=130 Identities=18% Similarity=0.224 Sum_probs=78.9
Q ss_pred CCcEEEeCCCCC--CCChHHHHHHHHHHHHHcCceEEEEcCCCCCCC------CCC-C--CceEEEcCCCChhhh---hc
Q 008369 375 EKPIYIGFGSLP--VEEPEKMTEIIVKALEITGHRGIINKGWGGLGN------LAE-S--KDFVYLLDNCPHDWL---FS 440 (568)
Q Consensus 375 ~p~VyVsfGS~~--~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~------l~~-~--~~nv~~~~~vP~~~l---l~ 440 (568)
++.|+|.+=... ...+.+....+++++...+.++++.....+.+. +.. . .+|+.+.+.+++.++ +.
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~ 280 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLK 280 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHH
Confidence 466667765432 334344455568999887654443321111110 111 1 468999998887665 59
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHHHHH
Q 008369 441 RCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKVKEH 515 (568)
Q Consensus 441 ~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~r~~ 515 (568)
+|+++|+-++.+. .||.+.|+|+|.+- +-+ .-+ +.|..+..+ ..+++++.+++..+++++.+++
T Consensus 281 ~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~~g~nvl~v---g~~~~~I~~a~~~~~~~~~~~~ 344 (365)
T TIGR03568 281 NADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-LRADSVIDV---DPDKEEIVKAIEKLLDPAFKKS 344 (365)
T ss_pred hCCEEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-hhcCeEEEe---CCCHHHHHHHHHHHhChHHHHH
Confidence 9999999886555 99999999999873 211 112 223222012 4478999999999667654443
No 91
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.42 E-value=3.3e-05 Score=82.21 Aligned_cols=155 Identities=10% Similarity=0.026 Sum_probs=99.1
Q ss_pred cEEEeCCCCCCC-ChHHHHHH---HHHHHHH--cCceEEEEcCCCCCCCCC--CCCceEEEcCCCChh-hhhccccEEEE
Q 008369 377 PIYIGFGSLPVE-EPEKMTEI---IVKALEI--TGHRGIINKGWGGLGNLA--ESKDFVYLLDNCPHD-WLFSRCLAVVH 447 (568)
Q Consensus 377 ~VyVsfGS~~~~-~~~~l~~~---i~~al~~--~~~~~Iv~~g~~~~~~l~--~~~~nv~~~~~vP~~-~ll~~~~~~I~ 447 (568)
.+++..|++... ..+.+... ++..+.. .+.+++++.++.. ..+. ...++|.+.++++.. .++..+|++|.
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~~~~~~~~~adv~v~ 303 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVADVRPYLAHAAVAVA 303 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecCCHHHHHHhCCEEEe
Confidence 455666776533 33333322 1222322 2567766643221 1111 124689999999853 34699999984
Q ss_pred e----CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 448 H----GGA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 448 H----GG~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
- .|. +.+.|||++|+|+|+.+...+. ..+..|.|. .++ -++++++++|.+++ |++.++++.+-++
T Consensus 304 Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~~~~g~-lv~---~~~~~la~ai~~ll~~~~~~~~~~~~ar 374 (397)
T TIGR03087 304 PLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDALPGAEL-LVA---ADPADFAAAILALLANPAEREELGQAAR 374 (397)
T ss_pred cccccCCcccHHHHHHHcCCCEEecCccccc-----ccccCCcce-EeC---CCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 2 344 4799999999999998753321 112346676 443 47899999999999 8887777666665
Q ss_pred Hh-hcCCcHHHHHHHHHHhCC
Q 008369 522 AM-ENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 522 ~~-~~~~g~~~av~~i~~~l~ 541 (568)
+. .+.-.++..++.+++++.
T Consensus 375 ~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 375 RRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHhCCHHHHHHHHHHHhc
Confidence 54 456788889998988874
No 92
>PLN00142 sucrose synthase
Probab=98.40 E-value=8.5e-05 Score=84.18 Aligned_cols=162 Identities=12% Similarity=-0.059 Sum_probs=99.7
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCC-CCC-----CC------C------CCCCceEEEcC
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGW-GGL-----GN------L------AESKDFVYLLD 431 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~-~~~-----~~------l------~~~~~nv~~~~ 431 (568)
.++++++.|.+.... -...+++|+... +.+++++.|. .+. +. + ..+.++|.+.+
T Consensus 572 ~kpvIl~VGRL~~~K---Gid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~flG 648 (815)
T PLN00142 572 KKPIIFSMARLDRVK---NLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFRWIA 648 (815)
T ss_pred CCcEEEEEecCcccC---CHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEEEcC
Confidence 345777778875432 122335555432 4667766553 110 00 0 12457788876
Q ss_pred C----CChhhhhc----cccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHH
Q 008369 432 N----CPHDWLFS----RCLAVVHH---GGA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDK 499 (568)
Q Consensus 432 ~----vP~~~ll~----~~~~~I~H---GG~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~ 499 (568)
. .+..+++. .+|+||.- -|. .++.||+++|+|+|+... ......|++...|. .++.. ++++
T Consensus 649 ~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG~tG~-LV~P~--D~ea 721 (815)
T PLN00142 649 AQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDGVSGF-HIDPY--HGDE 721 (815)
T ss_pred CcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCCCcEE-EeCCC--CHHH
Confidence 4 33455543 46888864 333 599999999999998654 33556666666787 56543 6788
Q ss_pred HHHHHHH----hc-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhCCCCCCC
Q 008369 500 LVDAIRF----ML-DPKVKEHAVELAKA-MENEDGVTGAVKAFYKHFPGKKSE 546 (568)
Q Consensus 500 L~~aI~~----lL-d~~~r~~a~~la~~-~~~~~g~~~av~~i~~~l~~~~~~ 546 (568)
++++|.. ++ |++.+++..+-+.+ +.+.-.++..++.++++......-
T Consensus 722 LA~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~L~~~~~~~ 774 (815)
T PLN00142 722 AANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLTLGGVYGFW 774 (815)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcchh
Confidence 8888764 45 88888777766543 345567777888777776554443
No 93
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=9.8e-05 Score=76.58 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=79.4
Q ss_pred ceEEEcCCCChhh-hhccccE------EEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCH
Q 008369 425 DFVYLLDNCPHDW-LFSRCLA------VVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSL 497 (568)
Q Consensus 425 ~nv~~~~~vP~~~-ll~~~~~------~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~ 497 (568)
.+|.+.+-.--.- ++.-+|+ ++-+||+| ..|.++.|+|+|.=|+...|..-++++.+.|+|+ .++ ++
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~-~v~----~~ 373 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGL-QVE----DA 373 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeE-EEC----CH
Confidence 3677766554333 3455555 34588887 7899999999999999999999999999999998 554 37
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHHhhc-CCcH-HHHHHHHHH
Q 008369 498 DKLVDAIRFML-DPKVKEHAVELAKAMEN-EDGV-TGAVKAFYK 538 (568)
Q Consensus 498 e~L~~aI~~lL-d~~~r~~a~~la~~~~~-~~g~-~~av~~i~~ 538 (568)
+.|.+++..++ |++.+++..+-+..+-. ..|+ ++..+.+..
T Consensus 374 ~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l~~ 417 (419)
T COG1519 374 DLLAKAVELLLADEDKREAYGRAGLEFLAQNRGALARTLEALKP 417 (419)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Confidence 88899999888 78888877666665543 3443 555555544
No 94
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.39 E-value=2.2e-05 Score=86.41 Aligned_cols=107 Identities=9% Similarity=-0.048 Sum_probs=75.4
Q ss_pred eEEEcCCCChh-hhhccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 008369 426 FVYLLDNCPHD-WLFSRCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKL 500 (568)
Q Consensus 426 nv~~~~~vP~~-~ll~~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L 500 (568)
++.+.++.++. .++..+|+||.-+- .++++|||++|+|+|+....+... +...+.|. + . -+.+++
T Consensus 602 ~V~FLG~~dd~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGl--l-~--~D~Eaf 671 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCL--T-Y--KTSEDF 671 (794)
T ss_pred EEEecCCCCCHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeE--e-c--CCHHHH
Confidence 58888888765 47899999997543 379999999999999987655331 22223333 2 1 368999
Q ss_pred HHHHHHhc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCCCCCCCC
Q 008369 501 VDAIRFML-DPKVKEHAVELAKAMENEDGVTGAVKAFYKHFPGKKSES 547 (568)
Q Consensus 501 ~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~~~~~~~ 547 (568)
+++|.++| |+..+..+.+ ...-.++.+++.++++-..++...
T Consensus 672 AeAI~~LLsd~~~rl~~~a-----~~~~SWeAaadrLle~~~~~~~~~ 714 (794)
T PLN02501 672 VAKVKEALANEPQPLTPEQ-----RYNLSWEAATQRFMEYSDLDKVLN 714 (794)
T ss_pred HHHHHHHHhCchhhhHHHH-----HhhCCHHHHHHHHHHhhccccccc
Confidence 99999999 6654332221 336678899999988876665444
No 95
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.38 E-value=5.3e-05 Score=82.64 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=92.0
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHcCceEEEEcCCCC-C-CCC----CCCCceEEEcCCCChhh---hhccccEE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEITGHRGIINKGWGG-L-GNL----AESKDFVYLLDNCPHDW---LFSRCLAV 445 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~~~~~Iv~~g~~~-~-~~l----~~~~~nv~~~~~vP~~~---ll~~~~~~ 445 (568)
.++++..|.+... ..+.+.+. ++.+.+.+.++++...+.. . ..+ ...+.++.+....+.+. ++..+|++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a-~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 369 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAA-LPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYAGADFI 369 (473)
T ss_pred CCEEEEEecCccccChHHHHHH-HHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHHhCCEE
Confidence 4677777887643 23333333 3334344677776643321 1 111 12456777776666654 46999999
Q ss_pred EEeC---Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-----CH
Q 008369 446 VHHG---GA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHAR------GLGPAPIPVEEFSLDKLVDAIRFML-----DP 510 (568)
Q Consensus 446 I~HG---G~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~------G~G~~~i~~~~lt~e~L~~aI~~lL-----d~ 510 (568)
|.-. |. .+.+||+++|+|.|+-...+ ....+.+. +.|. .++ .-++++|+++|.+++ |+
T Consensus 370 l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~-l~~--~~d~~~la~~i~~~l~~~~~~~ 442 (473)
T TIGR02095 370 LMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGF-LFE--EYDPGALLAALSRALRLYRQDP 442 (473)
T ss_pred EeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceE-EeC--CCCHHHHHHHHHHHHHHHhcCH
Confidence 9753 33 48899999999999865432 22333333 6776 444 457899999999876 34
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 511 KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 511 ~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+.++++.+-+ +.+.-++++.++.+++..
T Consensus 443 ~~~~~~~~~~--~~~~fsw~~~a~~~~~~Y 470 (473)
T TIGR02095 443 SLWEALQKNA--MSQDFSWDKSAKQYVELY 470 (473)
T ss_pred HHHHHHHHHH--hccCCCcHHHHHHHHHHH
Confidence 4333333222 234567777777776654
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.36 E-value=1.7e-05 Score=82.78 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=104.3
Q ss_pred CCCCceEecceeccCCCCCCCChhhHHh-hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCCCC
Q 008369 343 WGPKIDVVGFCFLDLASTYEPPDSLVKW-LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGWGG 416 (568)
Q Consensus 343 ~~~~v~~vGpl~~~~~~~~~~~~~l~~~-L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~ 416 (568)
++-++.|||=.+.+............+. ++.++++|.+--||-.. .-..+...++++.+.. +.++++......
T Consensus 151 ~g~~~~~VGHPl~d~~~~~~~~~~~~~~~l~~~~~iIaLLPGSR~~-EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~ 229 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKPEPDRAEAREKLLDPDKPIIALLPGSRKS-EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV 229 (373)
T ss_pred cCCCeEEECCcchhhhccCCCHHHHHHhcCCCCCcEEEEeCCCCHH-HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH
Confidence 4567899994344433222233333333 56778899999999542 2334555556665432 567776654332
Q ss_pred CCC-----CCCCCc--eEEEcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeec-CCCChhHHHHHHHH------
Q 008369 417 LGN-----LAESKD--FVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVP-FFGDQPFWGERVHA------ 482 (568)
Q Consensus 417 ~~~-----l~~~~~--nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP-~~~DQ~~na~~v~~------ 482 (568)
... +...+. .+.+... .-.+++..||+.+.-.| ..|+|+...|+|+|++= ...=-++.|+++.+
T Consensus 230 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~~m~~ad~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL 307 (373)
T PF02684_consen 230 HEELIEEILAEYPPDVSIVIIEG-ESYDAMAAADAALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISL 307 (373)
T ss_pred HHHHHHHHHHhhCCCCeEEEcCC-chHHHHHhCcchhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeec
Confidence 111 111122 2333322 23446789999998888 58899999999999972 11123445555533
Q ss_pred ------cCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhc
Q 008369 483 ------RGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMEN 525 (568)
Q Consensus 483 ------~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~ 525 (568)
..+-+ .+=.++.|++.|++++..+| |++.++......+.+.+
T Consensus 308 ~Niia~~~v~P-EliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~~~~~~~~ 356 (373)
T PF02684_consen 308 PNIIAGREVVP-ELIQEDATPENIAAELLELLENPEKRKKQKELFREIRQ 356 (373)
T ss_pred hhhhcCCCcch-hhhcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22222 22346889999999999999 87665555555444443
No 97
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.35 E-value=5.3e-05 Score=80.01 Aligned_cols=150 Identities=12% Similarity=0.047 Sum_probs=89.3
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHH-cCceEEEEcCCCCCCCCCC--CCceEEEcCCCChhhh---hccccEEEEe
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEI-TGHRGIINKGWGGLGNLAE--SKDFVYLLDNCPHDWL---FSRCLAVVHH 448 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~-~~~~~Iv~~g~~~~~~l~~--~~~nv~~~~~vP~~~l---l~~~~~~I~H 448 (568)
.+++.+.+|++..... .+.+.+..+. .+.++++............ ..+||.+.+++|++++ +..+|++|.-
T Consensus 204 ~~~~i~y~G~l~~~~d---~~ll~~la~~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P 280 (373)
T cd04950 204 PRPVIGYYGAIAEWLD---LELLEALAKARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILP 280 (373)
T ss_pred CCCEEEEEeccccccC---HHHHHHHHHHCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecC
Confidence 3456666788764221 2222222222 3577776654312111111 2379999999998887 5889998752
Q ss_pred --------CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHHH
Q 008369 449 --------GGA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DP-KVKEHAV 517 (568)
Q Consensus 449 --------GG~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~-~~r~~a~ 517 (568)
++. +.+.|+|++|+|+|..++ ...++..+.+. .++ -+.++++++|.+++ ++ ..+.+
T Consensus 281 ~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~~~~~-~~~---~d~~~~~~ai~~~l~~~~~~~~~-- 347 (373)
T cd04950 281 FRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYEDEVV-LIA---DDPEEFVAAIEKALLEDGPARER-- 347 (373)
T ss_pred CccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhcCcEE-EeC---CCHHHHHHHHHHHHhcCCchHHH--
Confidence 222 469999999999998753 23333334232 222 27999999999976 32 22211
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 518 ELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 518 ~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
+..+ +.++..++..++.+++.+.
T Consensus 348 ~~~~-~~~~~sW~~~a~~~~~~l~ 370 (373)
T cd04950 348 RRLR-LAAQNSWDARAAEMLEALQ 370 (373)
T ss_pred HHHH-HHHHCCHHHHHHHHHHHHH
Confidence 1112 5667888888887775543
No 98
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.34 E-value=0.00053 Score=77.80 Aligned_cols=117 Identities=10% Similarity=-0.104 Sum_probs=79.8
Q ss_pred CCceEEEcCCC-Chh---hhhc----cccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCC
Q 008369 423 SKDFVYLLDNC-PHD---WLFS----RCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPI 490 (568)
Q Consensus 423 ~~~nv~~~~~v-P~~---~ll~----~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i 490 (568)
+.++|.+.++. +.. .++. .+|+||.-. -..|+.||+++|+|+|+-.. ......|++...|. .+
T Consensus 617 L~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg~tGf-LV 691 (784)
T TIGR02470 617 LHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDGVSGF-HI 691 (784)
T ss_pred CCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCCCcEE-Ee
Confidence 45789999875 432 3443 346888643 23699999999999998643 34566777777787 56
Q ss_pred CCCCCCHHHHHHHHHHh----c-CHHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhCCCCCCC
Q 008369 491 PVEEFSLDKLVDAIRFM----L-DPKVKEHAVELAKA-MENEDGVTGAVKAFYKHFPGKKSE 546 (568)
Q Consensus 491 ~~~~lt~e~L~~aI~~l----L-d~~~r~~a~~la~~-~~~~~g~~~av~~i~~~l~~~~~~ 546 (568)
+. -++++++++|.++ + |++.+++..+-+.+ +.+.-+++..++.+.++.....+-
T Consensus 692 dp--~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~l~~~~~~~ 751 (784)
T TIGR02470 692 DP--YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLTLAGIYGFW 751 (784)
T ss_pred CC--CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhhHh
Confidence 53 3678899998865 4 78777776666543 345567788888887776544443
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.31 E-value=0.00023 Score=80.33 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=96.6
Q ss_pred cEEEeCCCCCCC-ChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCC------CCCCceEEEcCCCChh-hhhccccEEEE
Q 008369 377 PIYIGFGSLPVE-EPEKMTEIIVKALEIT-GHRGIINKGWGGLGNL------AESKDFVYLLDNCPHD-WLFSRCLAVVH 447 (568)
Q Consensus 377 ~VyVsfGS~~~~-~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~-~ll~~~~~~I~ 447 (568)
.+++..|.+... ....+++.+.+.++.. +.+++++.++...+.+ ..+.++|.+.+|.++. .++..+|+||.
T Consensus 518 ~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~Vl 597 (694)
T PRK15179 518 FTVGTVMRVDDNKRPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLL 597 (694)
T ss_pred eEEEEEEeCCccCCHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEe
Confidence 455566776432 3333444422222222 4676666543322212 1246889999998753 34799999987
Q ss_pred ---eCC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-----CHHHHHHHHH
Q 008369 448 ---HGG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-----DPKVKEHAVE 518 (568)
Q Consensus 448 ---HGG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-----d~~~r~~a~~ 518 (568)
+.| .+++.||+++|+|+|+.... .....+.+...|. .++..+.+.++++++|.+++ ++++++++++
T Consensus 598 pS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg~~Gl-Lv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~ 672 (694)
T PRK15179 598 LSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEGVTGL-TLPADTVTAPDVAEALARIHDMCAADPGIARKAAD 672 (694)
T ss_pred ccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCCCCEE-EeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHH
Confidence 444 48999999999999997643 3455666666787 67777777777777776654 4566665544
Q ss_pred HHHHhhcCCcHHHHHHHHHHhC
Q 008369 519 LAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 519 la~~~~~~~g~~~av~~i~~~l 540 (568)
.. .+.-..+..++.+++.+
T Consensus 673 ~a---~~~FS~~~~~~~~~~lY 691 (694)
T PRK15179 673 WA---SARFSLNQMIASTVRCY 691 (694)
T ss_pred HH---HHhCCHHHHHHHHHHHh
Confidence 43 33455666666666654
No 100
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.30 E-value=0.00011 Score=80.39 Aligned_cols=173 Identities=14% Similarity=0.097 Sum_probs=96.9
Q ss_pred CCCCceEecceeccCCCCCCCChhhHHhh--hcCCCcEEEeCCCCCCCChHHHHHHHHHHHH--Hc--CceEEEEcCCCC
Q 008369 343 WGPKIDVVGFCFLDLASTYEPPDSLVKWL--EDGEKPIYIGFGSLPVEEPEKMTEIIVKALE--IT--GHRGIINKGWGG 416 (568)
Q Consensus 343 ~~~~v~~vGpl~~~~~~~~~~~~~l~~~L--~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~--~~--~~~~Iv~~g~~~ 416 (568)
.+-++.+||=.+.+..+.....++..+-+ +++.++|-+--||-.. +-+.+...++++.+ .. +.++++......
T Consensus 379 ~gv~v~yVGHPL~d~i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~-EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~ 457 (608)
T PRK01021 379 SPLRTVYLGHPLVETISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRG-DILRNLTIQVQAFLASSLASTHQLLVSSANPK 457 (608)
T ss_pred cCCCeEEECCcHHhhcccCCCHHHHHHHcCCCCCCCEEEEECCCCHH-HHHHHHHHHHHHHHHHHhccCeEEEEecCchh
Confidence 45678889933333322222223333322 3355788899999542 34456666677776 32 456766533221
Q ss_pred C-CCCC----CCC-ceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeec-CCCChhHHHHHHHH-------
Q 008369 417 L-GNLA----ESK-DFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVP-FFGDQPFWGERVHA------- 482 (568)
Q Consensus 417 ~-~~l~----~~~-~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP-~~~DQ~~na~~v~~------- 482 (568)
. +.+. ..+ -++.++.--...+++..||+.+.-+| ..|+|+..+|+|+|++= ...=-+..|+++.+
T Consensus 458 ~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIs 536 (608)
T PRK01021 458 YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDCALAKCG-TIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYS 536 (608)
T ss_pred hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCeeeecCC-HHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeee
Confidence 0 1111 111 12233321012467899999999999 57899999999999962 11112345555554
Q ss_pred -------cCCCCCCCC-CCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 483 -------RGLGPAPIP-VEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 483 -------~G~G~~~i~-~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
..+=+..+. .++.|+++|++++ ++| |++.+++..+
T Consensus 537 LpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~ 580 (608)
T PRK01021 537 LPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKD 580 (608)
T ss_pred hhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHH
Confidence 233332232 4678999999997 666 7754444333
No 101
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.23 E-value=0.00011 Score=79.91 Aligned_cols=154 Identities=14% Similarity=0.130 Sum_probs=87.3
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHcCceEEEEcCCCC-C-CCC----CCCCceEE-EcCCCChh---hhhccccE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEITGHRGIINKGWGG-L-GNL----AESKDFVY-LLDNCPHD---WLFSRCLA 444 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~~~~~Iv~~g~~~-~-~~l----~~~~~nv~-~~~~vP~~---~ll~~~~~ 444 (568)
.++++..|.+... ..+.+.+. ++.+...+.++++..++.. . ..+ ...+.++. +.++ +.+ .++..+|+
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a-~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~~~aDv 359 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEA-LPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIYAGADM 359 (466)
T ss_pred CcEEEEeeccccccChHHHHHH-HHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHHhhCCE
Confidence 4677777887543 33333333 2223333778777643221 0 111 12345654 4566 433 34799999
Q ss_pred EEEeC---Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHHHHhc----CH
Q 008369 445 VVHHG---GA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHA------RGLGPAPIPVEEFSLDKLVDAIRFML----DP 510 (568)
Q Consensus 445 ~I~HG---G~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~------~G~G~~~i~~~~lt~e~L~~aI~~lL----d~ 510 (568)
+|.-. |. .+.+||+++|+|.|+....+ ....+.. .+.|. .++ .-++++|+++|.+++ ++
T Consensus 360 ~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~-lv~--~~d~~~la~~i~~~l~~~~~~ 432 (466)
T PRK00654 360 FLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGF-VFD--DFNAEDLLRALRRALELYRQP 432 (466)
T ss_pred EEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceE-EeC--CCCHHHHHHHHHHHHHHhcCH
Confidence 99742 33 58999999999999864332 1222322 26776 554 347899999999876 33
Q ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 511 KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 511 ~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+.+.++.+-+ +.+.-++++.++.+++..
T Consensus 433 ~~~~~~~~~~--~~~~fsw~~~a~~~~~lY 460 (466)
T PRK00654 433 PLWRALQRQA--MAQDFSWDKSAEEYLELY 460 (466)
T ss_pred HHHHHHHHHH--hccCCChHHHHHHHHHHH
Confidence 3333322211 234456777777766554
No 102
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.20 E-value=7.7e-06 Score=72.14 Aligned_cols=112 Identities=18% Similarity=0.161 Sum_probs=77.7
Q ss_pred CcEEEeCCCCCCCCh--HHHHHHHHHHHHHcCc-eEEEEcCCCCCCCC---CC--CCce--EEEcCCCCh-hhhhccccE
Q 008369 376 KPIYIGFGSLPVEEP--EKMTEIIVKALEITGH-RGIINKGWGGLGNL---AE--SKDF--VYLLDNCPH-DWLFSRCLA 444 (568)
Q Consensus 376 p~VyVsfGS~~~~~~--~~l~~~i~~al~~~~~-~~Iv~~g~~~~~~l---~~--~~~n--v~~~~~vP~-~~ll~~~~~ 444 (568)
..+||+-||...++- .-+.+...+.+.+.|+ +.|+..|.+..... .. -.+. |...+|-|- .+..+.+|+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Adl 83 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSADL 83 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhccE
Confidence 479999999763221 1223344666777776 55667666531111 00 1222 344456775 555788999
Q ss_pred EEEeCChhHHHHHHHhCCCEEeecCC----CChhHHHHHHHHcCCCC
Q 008369 445 VVHHGGAGTTAAGLKAACPTTIVPFF----GDQPFWGERVHARGLGP 487 (568)
Q Consensus 445 ~I~HGG~gT~~EaL~~GvP~vivP~~----~DQ~~na~~v~~~G~G~ 487 (568)
||+|+|+||++|.|..|+|.|+++-- ..|..-|..+++.|.=.
T Consensus 84 VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~ 130 (170)
T KOG3349|consen 84 VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLY 130 (170)
T ss_pred EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEE
Confidence 99999999999999999999999832 57999999999998765
No 103
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.15 E-value=0.00046 Score=75.27 Aligned_cols=157 Identities=15% Similarity=0.127 Sum_probs=88.6
Q ss_pred CcEEEeCCCCCCCC-hHHHHHHHHHHHHHcCceEEEEcCCCC-C-CCC----CCCCceEEEcCCCChhh---hhccccEE
Q 008369 376 KPIYIGFGSLPVEE-PEKMTEIIVKALEITGHRGIINKGWGG-L-GNL----AESKDFVYLLDNCPHDW---LFSRCLAV 445 (568)
Q Consensus 376 p~VyVsfGS~~~~~-~~~l~~~i~~al~~~~~~~Iv~~g~~~-~-~~l----~~~~~nv~~~~~vP~~~---ll~~~~~~ 445 (568)
.++++..|.+.... .+.+.+. ++.+...+.++++...+.. . ..+ ...++|+.+....+++. ++..+|++
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a-~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~aDv~ 374 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEA-LPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIYAGADFF 374 (476)
T ss_pred CCEEEEEeeccccccHHHHHHH-HHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHhCCEE
Confidence 46777778876432 3333333 3334444677776543221 0 111 12256777655445443 46899999
Q ss_pred EEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHH------HcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHH
Q 008369 446 VHHG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVH------ARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKE 514 (568)
Q Consensus 446 I~HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~------~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~ 514 (568)
+.-. | ..+.+||+++|+|+|+....+ ....+. ..|.|. .++ .-++++|+++|..++ ...-++
T Consensus 375 l~pS~~E~~gl~~lEAma~G~pvI~~~~gg----~~e~v~~~~~~~~~~~G~-~~~--~~~~~~l~~~i~~~l~~~~~~~ 447 (476)
T cd03791 375 LMPSRFEPCGLTQMYAMRYGTVPIVRATGG----LADTVIDYNEDTGEGTGF-VFE--GYNADALLAALRRALALYRDPE 447 (476)
T ss_pred ECCCCCCCCcHHHHHHhhCCCCCEECcCCC----ccceEeCCcCCCCCCCeE-EeC--CCCHHHHHHHHHHHHHHHcCHH
Confidence 9642 2 257899999999999865432 112222 234776 454 346899999999876 221123
Q ss_pred HHHHHHHHh-hcCCcHHHHHHHHHHhC
Q 008369 515 HAVELAKAM-ENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 515 ~a~~la~~~-~~~~g~~~av~~i~~~l 540 (568)
...++++.. ...-.++..++.+++.+
T Consensus 448 ~~~~~~~~~~~~~fsw~~~a~~~~~~y 474 (476)
T cd03791 448 AWRKLQRNAMAQDFSWDRSAKEYLELY 474 (476)
T ss_pred HHHHHHHHHhccCCChHHHHHHHHHHH
Confidence 333333332 23346777777776654
No 104
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.12 E-value=0.00095 Score=71.67 Aligned_cols=80 Identities=18% Similarity=0.044 Sum_probs=58.4
Q ss_pred CCceEEEcCCCChhhh---hccccEEEEeC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHH---HcCCCCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRCLAVVHHG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVH---ARGLGPAPIPV 492 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~~~~I~HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~---~~G~G~~~i~~ 492 (568)
+.++|.+.+++|++++ |..+|++|+-. | ..++.|||++|+|+|+.-..+. ....++ ....|. ..
T Consensus 303 l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g~~G~-l~-- 376 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGGPTGF-LA-- 376 (419)
T ss_pred CCCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCCCceE-Ee--
Confidence 4679999999998876 69999988632 2 2588999999999998654332 112233 455776 32
Q ss_pred CCCCHHHHHHHHHHhc-CH
Q 008369 493 EEFSLDKLVDAIRFML-DP 510 (568)
Q Consensus 493 ~~lt~e~L~~aI~~lL-d~ 510 (568)
. ++++++++|.+++ ++
T Consensus 377 -~-d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 -S-TAEEYAEAIEKILSLS 393 (419)
T ss_pred -C-CHHHHHHHHHHHHhCC
Confidence 2 7999999999999 54
No 105
>PLN02949 transferase, transferring glycosyl groups
Probab=98.09 E-value=0.0038 Score=67.74 Aligned_cols=108 Identities=15% Similarity=0.015 Sum_probs=67.5
Q ss_pred CCceEEEcCCCChhhh---hccccEEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHH--cC-CCCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRCLAVVHH---GGA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHA--RG-LGPAPIPV 492 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~~~~I~H---GG~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~--~G-~G~~~i~~ 492 (568)
+.++|.+.+++|++++ |.+++++|+- -|. .++.||+++|+|+|+....|-- ...+.. .| .|. ..
T Consensus 333 L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~-l~-- 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGF-LA-- 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccc-cC--
Confidence 4688999999998776 6899999952 233 4899999999999998654310 011111 12 354 22
Q ss_pred CCCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 493 EEFSLDKLVDAIRFML-D-PKVKEHAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 493 ~~lt~e~L~~aI~~lL-d-~~~r~~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
. +.++++++|.+++ + ++.++++.+.+++..+.-..+..++.+++
T Consensus 407 -~-~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~FS~e~~~~~~~~ 452 (463)
T PLN02949 407 -T-TVEEYADAILEVLRMRETERLEIAAAARKRANRFSEQRFNEDFKD 452 (463)
T ss_pred -C-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 2 7899999999998 4 55444433333332233344444444443
No 106
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.08 E-value=0.00011 Score=77.90 Aligned_cols=113 Identities=17% Similarity=0.133 Sum_probs=79.9
Q ss_pred CCceEEEcCCCChhhh---hccccEEEEeCC-----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---FSRCLAVVHHGG-----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEE 494 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l~~~~~~I~HGG-----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~ 494 (568)
...++.+.+++|++++ +..+|++|.... ..++.||+++|+|+|+.... .+...+++...|. .+. ..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~~~G~-~l~-~~ 328 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEGITGY-HLA-EP 328 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccCCceE-EEe-CC
Confidence 4568999999997766 699999997443 26889999999999997643 3445566666675 231 24
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 495 FSLDKLVDAIRFML-DPKVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 495 lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
.++++++++|..++ |++.++.+++..+...+.-.++..++.+++.+.
T Consensus 329 ~d~~~la~~I~~ll~d~~~~~~~~~ar~~~~~~fsw~~~a~~~~~~l~ 376 (380)
T PRK15484 329 MTSDSIISDINRTLADPELTQIAEQAKDFVFSKYSWEGVTQRFEEQIH 376 (380)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 47899999999999 887544333333344455677777777777653
No 107
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.02 E-value=7.1e-05 Score=79.97 Aligned_cols=157 Identities=15% Similarity=0.041 Sum_probs=98.9
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hcccc
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEIT--GHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSRCL 443 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~~~ 443 (568)
+..+++.|..... ..+.+.+. +..+.+. +.++++..++...+.+ ..+.++|.+.+|+|++++ +..+|
T Consensus 222 ~~~il~vGrl~~~Kg~~~ll~a-~~~l~~~~~~~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aD 300 (406)
T PRK15427 222 PLEIISVARLTEKKGLHVAIEA-CRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDAD 300 (406)
T ss_pred CeEEEEEeCcchhcCHHHHHHH-HHHHHhhCCCEEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCC
Confidence 4455666776532 33333433 3333332 3555555432221111 124678999999998876 69999
Q ss_pred EEEEeC---------Ch-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc--CHH
Q 008369 444 AVVHHG---------GA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML--DPK 511 (568)
Q Consensus 444 ~~I~HG---------G~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL--d~~ 511 (568)
++|.-. |. ++++||+++|+|+|+....+ ....+++...|. .++. -+.++++++|..++ |++
T Consensus 301 v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~-lv~~--~d~~~la~ai~~l~~~d~~ 373 (406)
T PRK15427 301 VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGW-LVPE--NDAQALAQRLAAFSQLDTD 373 (406)
T ss_pred EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceE-EeCC--CCHHHHHHHHHHHHhCCHH
Confidence 999742 33 67999999999999975433 445666666786 5553 47899999999987 676
Q ss_pred HHHHHHHHHHH-hhcCCcHHHHHHHHHHhC
Q 008369 512 VKEHAVELAKA-MENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 512 ~r~~a~~la~~-~~~~~g~~~av~~i~~~l 540 (568)
.+++..+-++. ..+.-..+..++.+.+.+
T Consensus 374 ~~~~~~~~ar~~v~~~f~~~~~~~~l~~~~ 403 (406)
T PRK15427 374 ELAPVVKRAREKVETDFNQQVINRELASLL 403 (406)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555554443 344456666666666554
No 108
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.01 E-value=0.00037 Score=66.67 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=39.7
Q ss_pred CCceEEEcCCCChhhh---h-ccccEEEEeCC----hhHHHHHHHhCCCEEeecCCCC
Q 008369 423 SKDFVYLLDNCPHDWL---F-SRCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGD 472 (568)
Q Consensus 423 ~~~nv~~~~~vP~~~l---l-~~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~D 472 (568)
..+|+.+.++++.... + ..||++|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 4578999999743332 3 55999999887 6999999999999999876543
No 109
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.97 E-value=3.4e-05 Score=71.55 Aligned_cols=141 Identities=21% Similarity=0.205 Sum_probs=93.2
Q ss_pred CCCcEEEeCCCCCC-CChHHHHHHHHHHHH--HcCceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhh---hcc
Q 008369 374 GEKPIYIGFGSLPV-EEPEKMTEIIVKALE--ITGHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWL---FSR 441 (568)
Q Consensus 374 ~~p~VyVsfGS~~~-~~~~~l~~~i~~al~--~~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~l---l~~ 441 (568)
..+.+++..|+... .....+++.+..... ...+.+++.........+ ....+++.+.++.+++++ +..
T Consensus 13 ~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~ 92 (172)
T PF00534_consen 13 DKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELYKS 92 (172)
T ss_dssp TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH
T ss_pred CCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccccc
Confidence 34577777888754 345555555333332 234555544311110000 135678999999985554 699
Q ss_pred ccEEEEe----CChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHH
Q 008369 442 CLAVVHH----GGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHA 516 (568)
Q Consensus 442 ~~~~I~H----GG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a 516 (568)
++++|+. |..+++.||+++|+|+|+. +...+...+...+.|. .++.. +.++++++|..++ +++.++.+
T Consensus 93 ~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~~~g~-~~~~~--~~~~l~~~i~~~l~~~~~~~~l 165 (172)
T PF00534_consen 93 SDIFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDGVNGF-LFDPN--DIEELADAIEKLLNDPELRQKL 165 (172)
T ss_dssp TSEEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTTTSEE-EESTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeccccccccccccccccccccccceeec----cccCCceeeccccceE-EeCCC--CHHHHHHHHHHHHCCHHHHHHH
Confidence 9999998 5668999999999999985 4666677777777787 56543 8999999999999 78777766
Q ss_pred HHHHH
Q 008369 517 VELAK 521 (568)
Q Consensus 517 ~~la~ 521 (568)
.+-++
T Consensus 166 ~~~~~ 170 (172)
T PF00534_consen 166 GKNAR 170 (172)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
No 110
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=0.00064 Score=69.88 Aligned_cols=193 Identities=17% Similarity=0.133 Sum_probs=112.4
Q ss_pred CCceEecceeccCCCCCCCChhhHHh--hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHc-----CceEEEEcCCCCC
Q 008369 345 PKIDVVGFCFLDLASTYEPPDSLVKW--LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEIT-----GHRGIINKGWGGL 417 (568)
Q Consensus 345 ~~v~~vGpl~~~~~~~~~~~~~l~~~--L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-----~~~~Iv~~g~~~~ 417 (568)
-..+|||=.+.+.-+.....+.+.+- ++.+++++.+--||-.. +-..+...+.++...+ +.++++-......
T Consensus 156 ~~~~yVGHpl~d~i~~~~~r~~ar~~l~~~~~~~~lalLPGSR~s-EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~ 234 (381)
T COG0763 156 LPCTYVGHPLADEIPLLPDREAAREKLGIDADEKTLALLPGSRRS-EIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY 234 (381)
T ss_pred CCeEEeCChhhhhccccccHHHHHHHhCCCCCCCeEEEecCCcHH-HHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH
Confidence 34788883333332222233333333 34566799999999643 3445555566666544 4777776543321
Q ss_pred CC-----CCC--CCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHH-------
Q 008369 418 GN-----LAE--SKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFG-DQPFWGERVHA------- 482 (568)
Q Consensus 418 ~~-----l~~--~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~-DQ~~na~~v~~------- 482 (568)
.. +.. ...++++.+.- -...|..||+.+.-+| .-+.|+..+|+|||+.=-.. =-++.+++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~al~aSG-T~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLp 312 (381)
T COG0763 235 RRIIEEALKWEVAGLSLILIDGE-KRKAFAAADAALAASG-TATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLP 312 (381)
T ss_pred HHHHHHHhhccccCceEEecCch-HHHHHHHhhHHHHhcc-HHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccch
Confidence 11 000 01233333321 1235788999998888 46889999999999852110 01233333332
Q ss_pred -----cCCCCCCCCCCCCCHHHHHHHHHHhc-CH----HHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 483 -----RGLGPAPIPVEEFSLDKLVDAIRFML-DP----KVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 483 -----~G~G~~~i~~~~lt~e~L~~aI~~lL-d~----~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
..+.+. +=.++.+++.|++++..++ |+ ++++...++.+.++.....+.+++.+.+++.
T Consensus 313 NIi~~~~ivPE-liq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 313 NILAGREIVPE-LIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLREDPASEIAAQAVLELLL 380 (381)
T ss_pred HHhcCCccchH-HHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhc
Confidence 222221 1136789999999999999 76 4566666677777665466888888877653
No 111
>PLN02316 synthase/transferase
Probab=97.91 E-value=0.0044 Score=72.33 Aligned_cols=155 Identities=10% Similarity=0.021 Sum_probs=91.7
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHH---cCceEEEEcCCCCC---CC---C-C----CCCceEEEcCCCChh---hh
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEI---TGHRGIINKGWGGL---GN---L-A----ESKDFVYLLDNCPHD---WL 438 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~---~~~~~Iv~~g~~~~---~~---l-~----~~~~nv~~~~~vP~~---~l 438 (568)
.+++...|.+..... ...+++|+.. .+.++++..++.+. .. + . ..+++|.+....+.. .+
T Consensus 840 ~plVg~VGRL~~qKG---vdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~i 916 (1036)
T PLN02316 840 LPLVGIITRLTHQKG---IHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLI 916 (1036)
T ss_pred CeEEEEEeccccccC---HHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHH
Confidence 356666777654322 2333444433 47787775433221 01 1 1 135678777665554 46
Q ss_pred hccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHH-------------cCCCCCCCCCCCCCHHHHH
Q 008369 439 FSRCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHA-------------RGLGPAPIPVEEFSLDKLV 501 (568)
Q Consensus 439 l~~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~-------------~G~G~~~i~~~~lt~e~L~ 501 (568)
+..+|+|+.-. =..+.+|||++|+|.|+-...| ....|.+ .+.|. .++ ..+++.|+
T Consensus 917 yaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~~~tGf-lf~--~~d~~aLa 989 (1036)
T PLN02316 917 YAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGLEPNGF-SFD--GADAAGVD 989 (1036)
T ss_pred HHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhccccccccccccccccCCceE-EeC--CCCHHHHH
Confidence 79999999643 2369999999999999864432 1122211 24565 443 55789999
Q ss_pred HHHHHhc-C-HHHHHHHHHHHHH-hhcCCcHHHHHHHHHHhC
Q 008369 502 DAIRFML-D-PKVKEHAVELAKA-MENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 502 ~aI~~lL-d-~~~r~~a~~la~~-~~~~~g~~~av~~i~~~l 540 (568)
.+|.+++ + .+.+....++++. +...-++++.++..+++.
T Consensus 990 ~AL~raL~~~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 990 YALNRAISAWYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 9999988 4 3444443444443 445567777777776654
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.91 E-value=0.0017 Score=67.02 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=104.1
Q ss_pred hhcCCCcEEEeCCCCCCCC--hHHHHHHHHHHHHHc-CceEEEEcCCCC-CCC--CCC--CCceEEEcCC---CChhhhh
Q 008369 371 LEDGEKPIYIGFGSLPVEE--PEKMTEIIVKALEIT-GHRGIINKGWGG-LGN--LAE--SKDFVYLLDN---CPHDWLF 439 (568)
Q Consensus 371 L~~~~p~VyVsfGS~~~~~--~~~l~~~i~~al~~~-~~~~Iv~~g~~~-~~~--l~~--~~~nv~~~~~---vP~~~ll 439 (568)
.+++++.++|++=...+.+ -+++.+.+.+.++.. ++.+|...-... ... ... ..+++++.+- .+...++
T Consensus 200 ~~~~~~~iLvT~HRreN~~~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~ 279 (383)
T COG0381 200 DDKDKKYILVTAHRRENVGEPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLM 279 (383)
T ss_pred ccccCcEEEEEcchhhcccccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHH
Confidence 3345568888876554433 223333333344444 445554332221 000 011 2346777654 4566677
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 440 SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
.+|-+++|-.| |-.-||-..|+|++++=..-+++. . .++|.-. .+ ..+.+.+.+++..++ +++..++++.
T Consensus 280 ~~a~~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~-v~agt~~-lv---g~~~~~i~~~~~~ll~~~~~~~~m~~ 350 (383)
T COG0381 280 KNAFLILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---G-VEAGTNI-LV---GTDEENILDAATELLEDEEFYERMSN 350 (383)
T ss_pred HhceEEEecCC-chhhhHHhcCCcEEeeccCCCCcc---c-eecCceE-Ee---CccHHHHHHHHHHHhhChHHHHHHhc
Confidence 99999999999 678899999999999988888875 2 2233333 22 446799999999999 8898888777
Q ss_pred HHHHhhcCCcHHHHHHHHHHhCCC
Q 008369 519 LAKAMENEDGVTGAVKAFYKHFPG 542 (568)
Q Consensus 519 la~~~~~~~g~~~av~~i~~~l~~ 542 (568)
...-..+....++.++.+......
T Consensus 351 ~~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 351 AKNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred ccCCCcCcchHHHHHHHHHHHhhh
Confidence 666655555567888888776543
No 113
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.87 E-value=0.0042 Score=66.39 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=75.6
Q ss_pred HHHHHHHHHcC--ceEEEEcCCCCCCCCCCCCceEEEcCCCC-hhhh---hccccEEEEeCC----hhHHHHHHHhCCCE
Q 008369 395 EIIVKALEITG--HRGIINKGWGGLGNLAESKDFVYLLDNCP-HDWL---FSRCLAVVHHGG----AGTTAAGLKAACPT 464 (568)
Q Consensus 395 ~~i~~al~~~~--~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP-~~~l---l~~~~~~I~HGG----~gT~~EaL~~GvP~ 464 (568)
..+++|+...+ .++++. |.+.. ...+++...++.. +.++ +..+|+||.-.- .++++||+++|+|+
T Consensus 259 ~~li~A~~~l~~~~~L~iv-G~g~~----~~~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PV 333 (405)
T PRK10125 259 QQLVREMMALGDKIELHTF-GKFSP----FTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPV 333 (405)
T ss_pred HHHHHHHHhCCCCeEEEEE-cCCCc----ccccceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCE
Confidence 33577777654 344444 33221 1235688788764 3333 688999997543 37999999999999
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHh
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENEDGVTGAVKAFYKH 539 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~~ 539 (568)
|+....+ ....+.. +.|. .++.. ++++|++++...+ +..+........+...+.-+.+..++..+++
T Consensus 334 Vat~~gG----~~Eiv~~-~~G~-lv~~~--d~~~La~~~~~~~~~~~~~~~~~~~r~~~~~~fs~~~~~~~y~~l 401 (405)
T PRK10125 334 IATHSDA----AREVLQK-SGGK-TVSEE--EVLQLAQLSKPEIAQAVFGTTLAEFSQRSRAAYSGQQMLEEYVNF 401 (405)
T ss_pred EEeCCCC----hHHhEeC-CcEE-EECCC--CHHHHHhccCHHHHHHhhhhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9987654 2333433 4687 56644 6778887543222 2211111122233334445555566555554
No 114
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.86 E-value=3.4e-05 Score=80.39 Aligned_cols=135 Identities=16% Similarity=0.134 Sum_probs=90.1
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCC-CCCceEEEcCCCChhhh---hccccEEEEe--CC
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLA-ESKDFVYLLDNCPHDWL---FSRCLAVVHH--GG 450 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~-~~~~nv~~~~~vP~~~l---l~~~~~~I~H--GG 450 (568)
..++..|++... +-.+.+++|++..+.++++..++...+.+. ...+||.+.+++|++++ +..+|++|.- -|
T Consensus 196 ~~il~~G~~~~~---K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~e~ 272 (351)
T cd03804 196 DYYLSVGRLVPY---KRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFLFPAEED 272 (351)
T ss_pred CEEEEEEcCccc---cChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEEECCcCC
Confidence 345566776432 224445788888888877765433211111 34689999999998765 6899999963 22
Q ss_pred -hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CH-HHHHHHHHHHH
Q 008369 451 -AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DP-KVKEHAVELAK 521 (568)
Q Consensus 451 -~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~-~~r~~a~~la~ 521 (568)
..++.||+++|+|+|+....+ ....+.+.+.|. .++. -+.++++++|..++ |+ ..++++++.++
T Consensus 273 ~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~-~~~~--~~~~~la~~i~~l~~~~~~~~~~~~~~~~ 339 (351)
T cd03804 273 FGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGI-LFEE--QTVESLAAAVERFEKNEDFDPQAIRAHAE 339 (351)
T ss_pred CCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEE-EeCC--CCHHHHHHHHHHHHhCcccCHHHHHHHHH
Confidence 256789999999999986433 334566666786 4543 36889999999999 77 45555544443
No 115
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.82 E-value=0.006 Score=60.83 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=73.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC--CchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCCh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA--NFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEI 200 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~--~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (568)
|||.|=.. -.-|+.-|-.+.++|.++||+|.+.+-+ ...+.++..|+++.+++... ...+
T Consensus 1 mkVwiDI~-n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g-----------------~~tl 62 (346)
T COG1817 1 MKVWIDIG-NPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHG-----------------GVTL 62 (346)
T ss_pred CeEEEEcC-CcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccC-----------------CccH
Confidence 45555433 3458999999999999999999988743 45688899999999997531 0111
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEecc
Q 008369 201 PIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFTM 260 (568)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t~ 260 (568)
. ..+.+..+.... +.++..+|+||+.|. -.+.-..++|-.+|+|.+++.-.
T Consensus 63 ~---~Kl~~~~eR~~~-----L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ 113 (346)
T COG1817 63 K---EKLLESAERVYK-----LSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDN 113 (346)
T ss_pred H---HHHHHHHHHHHH-----HHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCC
Confidence 1 011111111111 011445779999998 34555678999999999987543
No 116
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.55 E-value=0.003 Score=69.00 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=99.4
Q ss_pred CcEEEeCCCCCC-CChHHHHHHHHHHHHH--cCceEEEEcCCCCCCC----C------CCCCceEEEcCCCChhhhhccc
Q 008369 376 KPIYIGFGSLPV-EEPEKMTEIIVKALEI--TGHRGIINKGWGGLGN----L------AESKDFVYLLDNCPHDWLFSRC 442 (568)
Q Consensus 376 p~VyVsfGS~~~-~~~~~l~~~i~~al~~--~~~~~Iv~~g~~~~~~----l------~~~~~nv~~~~~vP~~~ll~~~ 442 (568)
+++.+..|.+.. .+.+.+.+. +..+.+ .+.++++..+...... + ..+.++|.+.+......+++.+
T Consensus 293 ~~~i~~vGrl~~~Kg~~~li~a-~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l~~a 371 (475)
T cd03813 293 PPVVGLIGRVVPIKDIKTFIRA-AAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYLPKL 371 (475)
T ss_pred CcEEEEEeccccccCHHHHHHH-HHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHHHhC
Confidence 456677788753 244444444 233332 2466665543211111 0 1246899999966666778999
Q ss_pred cEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHc------CCCCCCCCCCCCCHHHHHHHHHHhc-CHH
Q 008369 443 LAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHAR------GLGPAPIPVEEFSLDKLVDAIRFML-DPK 511 (568)
Q Consensus 443 ~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~------G~G~~~i~~~~lt~e~L~~aI~~lL-d~~ 511 (568)
|++|.-. -.+++.||+++|+|+|+- |.......+++. ..|. .++ ..+.++++++|.+++ |++
T Consensus 372 Dv~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~~~~~~~g~~G~-lv~--~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 372 DVLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEGADDEALGPAGE-VVP--PADPEALARAILRLLKDPE 444 (475)
T ss_pred CEEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcCCcccccCCceE-EEC--CCCHHHHHHHHHHHhcCHH
Confidence 9998664 347999999999999984 444455566552 2565 444 447899999999999 888
Q ss_pred HHHHHHHHHHH-hhcCCcHHHHHHHHHHh
Q 008369 512 VKEHAVELAKA-MENEDGVTGAVKAFYKH 539 (568)
Q Consensus 512 ~r~~a~~la~~-~~~~~g~~~av~~i~~~ 539 (568)
.++++.+.+.. +.+.-..+..++.+.++
T Consensus 445 ~~~~~~~~a~~~v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 445 LRRAMGEAGRKRVERYYTLERMIDSYRRL 473 (475)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 77777666654 33344556666666654
No 117
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.54 E-value=0.0012 Score=70.69 Aligned_cols=94 Identities=12% Similarity=0.060 Sum_probs=69.5
Q ss_pred CceEEEcCCCChhhh---hc--cccEEEEeCC----hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCC
Q 008369 424 KDFVYLLDNCPHDWL---FS--RCLAVVHHGG----AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEE 494 (568)
Q Consensus 424 ~~nv~~~~~vP~~~l---l~--~~~~~I~HGG----~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~ 494 (568)
.++|.+.+++++.++ +. .+++||...- .++++||+++|+|+|+-. .......+.+.+.|. .++. .
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~~~~G~-l~~~-~ 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDNGGNGL-LLSK-D 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcCCCcEE-EeCC-C
Confidence 468999999998765 33 4788887654 478999999999999854 334556776666886 4432 3
Q ss_pred CCHHHHHHHHHHhc-CHHHHHHHHHHHHHh
Q 008369 495 FSLDKLVDAIRFML-DPKVKEHAVELAKAM 523 (568)
Q Consensus 495 lt~e~L~~aI~~lL-d~~~r~~a~~la~~~ 523 (568)
-+.++++++|.+++ |++.++++.+-+.+.
T Consensus 362 ~~~~~la~~I~~ll~~~~~~~~m~~~ar~~ 391 (407)
T cd04946 362 PTPNELVSSLSKFIDNEEEYQTMREKAREK 391 (407)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 47899999999999 887776665555443
No 118
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.49 E-value=0.0012 Score=72.22 Aligned_cols=161 Identities=13% Similarity=0.033 Sum_probs=98.3
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHH-cCceEEEEcCCCCCCCC------CCCCceEEEcCCCChhhhhccccEEEE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEI-TGHRGIINKGWGGLGNL------AESKDFVYLLDNCPHDWLFSRCLAVVH 447 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~-~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~~ll~~~~~~I~ 447 (568)
+.+.+..|.+... ....+++++....+. .+.++++...+...+.+ ..+.++|.+.++.+...++..++++|.
T Consensus 319 ~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~~~adv~v~ 398 (500)
T TIGR02918 319 PFSIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVYKDYELYLS 398 (500)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHHHhCCEEEE
Confidence 4566677887532 233333332222222 24555555332221111 124578999999988888999999997
Q ss_pred eC---C-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC--CCC----HHHHHHHHHHhcCHHHHHHHH
Q 008369 448 HG---G-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVE--EFS----LDKLVDAIRFMLDPKVKEHAV 517 (568)
Q Consensus 448 HG---G-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~--~lt----~e~L~~aI~~lLd~~~r~~a~ 517 (568)
-. | ..+++||+++|+|+|+....+ .....+++...|. .++.. .-+ .+.|+++|..+++++.++++.
T Consensus 399 pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~-lv~~~~~~~d~~~~~~~la~~I~~ll~~~~~~~~~ 474 (500)
T TIGR02918 399 ASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGY-LIPIDEEEDDEDQIITALAEKIVEYFNSNDIDAFH 474 (500)
T ss_pred cCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEE-EEeCCccccchhHHHHHHHHHHHHHhChHHHHHHH
Confidence 43 3 479999999999999975431 2345566666776 55532 122 788999999999544455555
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhC
Q 008369 518 ELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 518 ~la~~~~~~~g~~~av~~i~~~l 540 (568)
+-+.+..+.-..+..++.+++++
T Consensus 475 ~~a~~~a~~fs~~~v~~~w~~ll 497 (500)
T TIGR02918 475 EYSYQIAEGFLTANIIEKWKKLV 497 (500)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555556666666666554
No 119
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=0.00098 Score=58.01 Aligned_cols=105 Identities=16% Similarity=0.146 Sum_probs=70.9
Q ss_pred EEEeCCCCCCCChHHHHHH--HHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCC---hhhhhccccEEEEeCChh
Q 008369 378 IYIGFGSLPVEEPEKMTEI--IVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCP---HDWLFSRCLAVVHHGGAG 452 (568)
Q Consensus 378 VyVsfGS~~~~~~~~l~~~--i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP---~~~ll~~~~~~I~HGG~g 452 (568)
+||+-||.... -..+... +.+-.+....++|+..|.++... .. ...+.+|.- .+.+...++.+|+|+|.|
T Consensus 2 ifVTvGstf~~-f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kp---va-gl~v~~F~~~~kiQsli~darIVISHaG~G 76 (161)
T COG5017 2 IFVTVGSTFYP-FNRLVLKIEVLELTELIQEELIVQYGNGDIKP---VA-GLRVYGFDKEEKIQSLIHDARIVISHAGEG 76 (161)
T ss_pred eEEEecCccch-HHHHHhhHHHHHHHHHhhhheeeeecCCCccc---cc-ccEEEeechHHHHHHHhhcceEEEeccCcc
Confidence 68999998432 1112111 12223333557788887654221 11 246666653 334458889999999999
Q ss_pred HHHHHHHhCCCEEeecCCC--------ChhHHHHHHHHcCCCC
Q 008369 453 TTAAGLKAACPTTIVPFFG--------DQPFWGERVHARGLGP 487 (568)
Q Consensus 453 T~~EaL~~GvP~vivP~~~--------DQ~~na~~v~~~G~G~ 487 (568)
|++.++..++|.|++|--. .|-..|..+++.+.=+
T Consensus 77 SIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv 119 (161)
T COG5017 77 SILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVV 119 (161)
T ss_pred hHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceE
Confidence 9999999999999999643 4788899998888776
No 120
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.33 E-value=0.0036 Score=65.58 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=87.5
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHH-cCceEEEEcCCCCCCCC------CCCCceEEEcCCCChh-hhhccccEEE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEI-TGHRGIINKGWGGLGNL------AESKDFVYLLDNCPHD-WLFSRCLAVV 446 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~-~~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~~-~ll~~~~~~I 446 (568)
+..++..|.+... ....+.+.+...... .+.++++...+.....+ ...+++|.+.++.++. .++..+|++|
T Consensus 204 ~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 283 (372)
T cd04949 204 PHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVYQKAQLSL 283 (372)
T ss_pred CCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHHhhhhEEE
Confidence 4455666776432 334444442222222 24566655432221111 1346789999876543 4579999988
Q ss_pred EeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 008369 447 HHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAK 521 (568)
Q Consensus 447 ~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~ 521 (568)
.-+ ...+++||+++|+|+|+..... .....+.....|. .++ .-+.++++++|..++ |++.++.+.+.+.
T Consensus 284 ~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~-lv~--~~d~~~la~~i~~ll~~~~~~~~~~~~a~ 357 (372)
T cd04949 284 LTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGY-LVP--KGDIEALAEAIIELLNDPKLLQKFSEAAY 357 (372)
T ss_pred ecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCce-EeC--CCcHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 643 3469999999999999975331 2345566667887 554 347899999999999 8766655555554
Q ss_pred Hhh
Q 008369 522 AME 524 (568)
Q Consensus 522 ~~~ 524 (568)
+..
T Consensus 358 ~~~ 360 (372)
T cd04949 358 ENA 360 (372)
T ss_pred HHH
Confidence 443
No 121
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.21 E-value=0.0043 Score=64.40 Aligned_cols=123 Identities=17% Similarity=0.139 Sum_probs=86.5
Q ss_pred cCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhh---hccccEEEEeC--------Ch------hHHHHHHHhCCCEEe
Q 008369 404 TGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWL---FSRCLAVVHHG--------GA------GTTAAGLKAACPTTI 466 (568)
Q Consensus 404 ~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~l---l~~~~~~I~HG--------G~------gT~~EaL~~GvP~vi 466 (568)
.+.++++.. .+.... ...+||.+.+|+|++++ +...-++|.-+ .+ +-+.+.|++|+|+|+
T Consensus 189 ~~~~l~i~G-~g~~~~--~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~ 265 (333)
T PRK09814 189 QGIKLTVFG-PNPEDL--ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIV 265 (333)
T ss_pred CCCeEEEEC-CCcccc--ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEE
Confidence 356665543 332211 34579999999999887 34422233221 11 337788999999998
Q ss_pred ecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC---HHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 467 VPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLD---PKVKEHAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 467 vP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd---~~~r~~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
. ++...+..|++.++|. .++ +.+++.+++..+.+ .+++++++++++++++..=...|++.++.
T Consensus 266 ~----~~~~~~~~V~~~~~G~-~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g~~~~~~~~~~~~ 331 (333)
T PRK09814 266 W----SKAAIADFIVENGLGF-VVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNGYFTKKALVDAIK 331 (333)
T ss_pred C----CCccHHHHHHhCCceE-EeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHh
Confidence 5 4677889999999998 554 56889999998663 35788999999999886666777766654
No 122
>PHA01630 putative group 1 glycosyl transferase
Probab=97.10 E-value=0.015 Score=60.36 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=72.5
Q ss_pred cCCCChhhh---hccccEEEE---eCC-hhHHHHHHHhCCCEEeecCCC--Chh---HHHHHHHH-----------cCCC
Q 008369 430 LDNCPHDWL---FSRCLAVVH---HGG-AGTTAAGLKAACPTTIVPFFG--DQP---FWGERVHA-----------RGLG 486 (568)
Q Consensus 430 ~~~vP~~~l---l~~~~~~I~---HGG-~gT~~EaL~~GvP~vivP~~~--DQ~---~na~~v~~-----------~G~G 486 (568)
.+++|++++ +..+|++|. ..| ..++.|||++|+|+|+....+ |.- .|+-.+.. .++|
T Consensus 195 ~~~v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 195 KTPLPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred eccCCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCcccc
Confidence 344887776 699999984 232 468999999999999976443 211 12211110 2456
Q ss_pred CCCCCCCCCCHHHHHHHHHHhc-C---HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 487 PAPIPVEEFSLDKLVDAIRFML-D---PKVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 487 ~~~i~~~~lt~e~L~~aI~~lL-d---~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
. .++ .+.+++.+++.+++ | ++.++....-+....+.-..+..++.+++.+.
T Consensus 275 ~-~v~---~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 275 Y-FLD---PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWEKILE 329 (331)
T ss_pred c-ccC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5 333 25788888888888 6 46666666666667777888888888888764
No 123
>PHA01633 putative glycosyl transferase group 1
Probab=96.89 E-value=0.011 Score=61.08 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=57.5
Q ss_pred CCceEEEc---CCCChhhh---hccccEEEEeC---C-hhHHHHHHHhCCCEEeecC------CCCh------hHHHHHH
Q 008369 423 SKDFVYLL---DNCPHDWL---FSRCLAVVHHG---G-AGTTAAGLKAACPTTIVPF------FGDQ------PFWGERV 480 (568)
Q Consensus 423 ~~~nv~~~---~~vP~~~l---l~~~~~~I~HG---G-~gT~~EaL~~GvP~vivP~------~~DQ------~~na~~v 480 (568)
.+++|.+. ++++++++ +..+|+||.-. | ..+++||+++|+|+|+--. .+|+ ..+..-.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 56789888 55666544 69999999753 3 3789999999999998633 2343 2222222
Q ss_pred H--HcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 481 H--ARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 481 ~--~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
. ..|.|. .+ ...++++++++|..++
T Consensus 279 ~~~~~g~g~-~~--~~~d~~~la~ai~~~~ 305 (335)
T PHA01633 279 YDKEHGQKW-KI--HKFQIEDMANAIILAF 305 (335)
T ss_pred cCcccCcee-ee--cCCCHHHHHHHHHHHH
Confidence 2 346666 34 3678999999999885
No 124
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.59 E-value=0.03 Score=60.10 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=84.1
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCC--C-------CCCCceEEEcCCCChhhh---hcccc
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGN--L-------AESKDFVYLLDNCPHDWL---FSRCL 443 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~--l-------~~~~~nv~~~~~vP~~~l---l~~~~ 443 (568)
.++|.+|.+....+|+ ..+.-.+.|+..+.-.+|......... + .-.++++.+.+..+..+- +..+|
T Consensus 285 ~vvF~~fn~~~KI~p~-~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~D 363 (468)
T PF13844_consen 285 AVVFGSFNNLFKISPE-TLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLAD 363 (468)
T ss_dssp SEEEEE-S-GGG--HH-HHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-S
T ss_pred ceEEEecCccccCCHH-HHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCC
Confidence 4899999888766665 455557777777665555443222110 0 112578999998886654 47799
Q ss_pred EEEE---eCChhHHHHHHHhCCCEEeecCCC-ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 444 AVVH---HGGAGTTAAGLKAACPTTIVPFFG-DQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 444 ~~I~---HGG~gT~~EaL~~GvP~vivP~~~-DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
+++- .+|.+|++|||++|||+|.+|--. -...-+..+...|+.- .+- -+.++..+.-.++- |++++++.++
T Consensus 364 I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~E-lIA---~s~~eYv~~Av~La~D~~~l~~lR~ 439 (468)
T PF13844_consen 364 ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPE-LIA---DSEEEYVEIAVRLATDPERLRALRA 439 (468)
T ss_dssp EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GG-GB----SSHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCch-hcC---CCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9864 578899999999999999998321 1234455668888886 442 24555544444444 8877765554
Q ss_pred HH-HHhhcC--CcHHHHHHHHHHhC
Q 008369 519 LA-KAMENE--DGVTGAVKAFYKHF 540 (568)
Q Consensus 519 la-~~~~~~--~g~~~av~~i~~~l 540 (568)
-- +++... -..++.++.+|+.+
T Consensus 440 ~Lr~~~~~SpLfd~~~~ar~lE~a~ 464 (468)
T PF13844_consen 440 KLRDRRSKSPLFDPKRFARNLEAAY 464 (468)
T ss_dssp HHHHHHHHSGGG-HHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 33 233221 23356666666543
No 125
>PRK14098 glycogen synthase; Provisional
Probab=96.55 E-value=0.022 Score=62.41 Aligned_cols=159 Identities=13% Similarity=0.051 Sum_probs=93.6
Q ss_pred CcEEEeCCCCCCC-ChHHHHHHHHHHHHHcCceEEEEcCCCC--CCCC----CCCCceEEEcCCCChhh---hhccccEE
Q 008369 376 KPIYIGFGSLPVE-EPEKMTEIIVKALEITGHRGIINKGWGG--LGNL----AESKDFVYLLDNCPHDW---LFSRCLAV 445 (568)
Q Consensus 376 p~VyVsfGS~~~~-~~~~l~~~i~~al~~~~~~~Iv~~g~~~--~~~l----~~~~~nv~~~~~vP~~~---ll~~~~~~ 445 (568)
.++++..|.+... ..+.+.+. +..+...+.++++...+.. ...+ ...+++|.+.+.++... +++.+|+|
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a-~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~aDi~ 385 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAES-LEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAGLDML 385 (489)
T ss_pred CCEEEEeccccccCcHHHHHHH-HHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHhCCEE
Confidence 3677777877543 23333343 3333344777776643221 0111 12467899999888764 47999999
Q ss_pred EEeCCh----hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc----CHHHHHHHH
Q 008369 446 VHHGGA----GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML----DPKVKEHAV 517 (568)
Q Consensus 446 I~HGG~----gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL----d~~~r~~a~ 517 (568)
+.-.=. .+.+||+++|+|.|+....+-...-....++.+.|. .++ .-+++.|+++|.+++ |++.+++..
T Consensus 386 l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~-l~~--~~d~~~la~ai~~~l~~~~~~~~~~~~~ 462 (489)
T PRK14098 386 LMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGF-IFH--DYTPEALVAKLGEALALYHDEERWEELV 462 (489)
T ss_pred EeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCcee-EeC--CCCHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 975432 578899999999888764332110000111246676 444 457899999998754 554433332
Q ss_pred HHHHHhhcCCcHHHHHHHHHHhC
Q 008369 518 ELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 518 ~la~~~~~~~g~~~av~~i~~~l 540 (568)
+ +.+.+.-+++..++.++++.
T Consensus 463 ~--~~~~~~fsw~~~a~~y~~lY 483 (489)
T PRK14098 463 L--EAMERDFSWKNSAEEYAQLY 483 (489)
T ss_pred H--HHhcCCCChHHHHHHHHHHH
Confidence 2 22344557777777776654
No 126
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.52 E-value=0.0038 Score=65.12 Aligned_cols=153 Identities=17% Similarity=0.164 Sum_probs=83.4
Q ss_pred cCCCcEEEeCCCCCCCC-h---HHHHHHHHHHHHHc-CceEEEEcCCCCC------CCCCCCCceEEEcCCCChhhh---
Q 008369 373 DGEKPIYIGFGSLPVEE-P---EKMTEIIVKALEIT-GHRGIINKGWGGL------GNLAESKDFVYLLDNCPHDWL--- 438 (568)
Q Consensus 373 ~~~p~VyVsfGS~~~~~-~---~~l~~~i~~al~~~-~~~~Iv~~g~~~~------~~l~~~~~nv~~~~~vP~~~l--- 438 (568)
..++.+++++=.....+ + .++.+ +++++... ++++|+.....+. +.+... +|+.+...+++...
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~-~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l~l 255 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILE-ALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYLSL 255 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHH-HHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHH-HHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHHHH
Confidence 34568888885555544 3 23333 36666665 6777776542221 112334 49999998887655
Q ss_pred hccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHH
Q 008369 439 FSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAV 517 (568)
Q Consensus 439 l~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~ 517 (568)
+.+|+++|+-.| |-.-||.+.|+|+|.+=..++.+ .....|..+ + . ..+.+++.++|++++ +++...++.
T Consensus 256 l~~a~~vvgdSs-GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nv--l-v-~~~~~~I~~ai~~~l~~~~~~~~~~ 326 (346)
T PF02350_consen 256 LKNADLVVGDSS-GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNV--L-V-GTDPEAIIQAIEKALSDKDFYRKLK 326 (346)
T ss_dssp HHHESEEEESSH-HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEE--E-E-TSSHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HhcceEEEEcCc-cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceE--E-e-CCCHHHHHHHHHHHHhChHHHHhhc
Confidence 599999999999 54449999999999983333321 122344443 2 2 368999999999999 645555443
Q ss_pred HHHHHhhcCCcHHHHHHHH
Q 008369 518 ELAKAMENEDGVTGAVKAF 536 (568)
Q Consensus 518 ~la~~~~~~~g~~~av~~i 536 (568)
....-+.+.+..++.++.+
T Consensus 327 ~~~npYgdG~as~rI~~~L 345 (346)
T PF02350_consen 327 NRPNPYGDGNASERIVEIL 345 (346)
T ss_dssp CS--TT-SS-HHHHHHHHH
T ss_pred cCCCCCCCCcHHHHHHHhh
Confidence 3233333333345555554
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.50 E-value=0.0025 Score=56.42 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=65.4
Q ss_pred EEEeCCCCCC-CChHHHHHHHHHHHHHc--CceEEEEcCCCCCCCCCCC-CceEEEcCCCCh-hhhhccccEEEEeC---
Q 008369 378 IYIGFGSLPV-EEPEKMTEIIVKALEIT--GHRGIINKGWGGLGNLAES-KDFVYLLDNCPH-DWLFSRCLAVVHHG--- 449 (568)
Q Consensus 378 VyVsfGS~~~-~~~~~l~~~i~~al~~~--~~~~Iv~~g~~~~~~l~~~-~~nv~~~~~vP~-~~ll~~~~~~I~HG--- 449 (568)
+++++|+... .+.+.+.+.+++.+.+. +..+++..+..+ .+.+. .+||.+.++++. ..++.+||++|.-.
T Consensus 4 ~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~~~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~ 81 (135)
T PF13692_consen 4 YIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRLRRPNVRFHGFVEELPEILAAADVGLIPSRFN 81 (135)
T ss_dssp EEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCHHHCTEEEE-S-HHHHHHHHC-SEEEE-BSS-
T ss_pred cccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHhcCCCEEEcCCHHHHHHHHHhCCEEEEEeeCC
Confidence 4456666543 34455555234555433 456655443222 23333 569999999952 12368899988732
Q ss_pred --ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 450 --GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 450 --G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
-.+++.|++++|+|+|+.+. .....++..+.|. .+ .-++++++++|.+++
T Consensus 82 ~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~-~~---~~~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 82 EGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGV-LV---ANDPEELAEAIERLL 133 (135)
T ss_dssp SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEE-E----TT-HHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeE-EE---CCCHHHHHHHHHHHh
Confidence 24899999999999999764 2233445566775 34 338999999999987
No 128
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.47 E-value=0.95 Score=47.30 Aligned_cols=49 Identities=10% Similarity=0.149 Sum_probs=43.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G 169 (568)
.++||||+-...-||+.=..++.++|+++ +.+|++++.+.+.+.++...
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P 54 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENP 54 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCC
Confidence 56899999999999999999999999986 89999999998888877653
No 129
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.39 E-value=0.38 Score=48.37 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=40.9
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G 169 (568)
|||++-..+.||+.-+.++.++|+++ +-+|++++.+...++++...
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p 48 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMP 48 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCC
Confidence 68999999999999999999999987 48999999998888887653
No 130
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.37 E-value=0.15 Score=53.25 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=42.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G 169 (568)
|||||+-..+-||+.-..++.++|+++ +.+|++++.+.+.+.++...
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P 49 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMP 49 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCC
Confidence 799999999999999999999999885 89999999998888887654
No 131
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=96.24 E-value=0.11 Score=53.60 Aligned_cols=47 Identities=13% Similarity=0.174 Sum_probs=41.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G 169 (568)
|||||+-.++-||+.-..++.+.|++. +.+|++++.+.+.+.++...
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~~~p 49 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPSWHP 49 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHhcCC
Confidence 799999999999999999999999886 99999999988887776543
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.23 E-value=0.042 Score=48.79 Aligned_cols=101 Identities=20% Similarity=0.222 Sum_probs=63.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc-hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChhH
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF-KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPI 202 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~-~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~ 202 (568)
||++++.....| ...+++.|.++||+|.+++..+. .......|+.++.++... . ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~----------------k-~~~-- 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR----------------K-SPL-- 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC----------------C-ccH--
Confidence 577777666555 45779999999999999998654 344557888888875310 0 001
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCc---ccHHHHHHHcC-CCEEEEe
Q 008369 203 QRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPA---YGHTHVAESLK-VPLHIIF 258 (568)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~---~~~~~~A~~lg-IP~v~~~ 258 (568)
..+. +. .+.+ .++..+||+|.+.... +.+..++...| +|++...
T Consensus 59 --~~~~-~~-~l~k--------~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 59 --NYIK-YF-RLRK--------IIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred --HHHH-HH-HHHH--------HhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 1111 11 2222 2335589999886433 33556778888 9988643
No 133
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.01 E-value=0.067 Score=58.62 Aligned_cols=158 Identities=10% Similarity=0.042 Sum_probs=89.6
Q ss_pred cEEEeCCCCC-CCChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCC------CCCCceEEEcCCCCh-hhhhccccEEEE
Q 008369 377 PIYIGFGSLP-VEEPEKMTEIIVKALEIT-GHRGIINKGWGGLGNL------AESKDFVYLLDNCPH-DWLFSRCLAVVH 447 (568)
Q Consensus 377 ~VyVsfGS~~-~~~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l------~~~~~nv~~~~~vP~-~~ll~~~~~~I~ 447 (568)
++..+.|.+. ...+..+++.+.+.++.. +++++++..+...+.+ ..+.++|.+.++... ..+|..+|+||.
T Consensus 399 ~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVl 478 (578)
T PRK15490 399 TTIGGVFRFVGDKNPFAWIDFAARYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFIL 478 (578)
T ss_pred cEEEEEEEEehhcCHHHHHHHHHHHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEE
Confidence 4445556543 335555666544444443 5666665432221112 124588999999643 334799999997
Q ss_pred e---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHH---hc-CHHHHHHHHHH
Q 008369 448 H---GG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRF---ML-DPKVKEHAVEL 519 (568)
Q Consensus 448 H---GG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~---lL-d~~~r~~a~~l 519 (568)
. -| .+++.||+++|+|+|+... ..+...+.+...|. .++.. +.+.+++++.. ++ +.+.+....+.
T Consensus 479 PS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG~nG~-LVp~~--D~~aLa~ai~lA~aL~~ll~~~~~mg~~ 551 (578)
T PRK15490 479 FSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEGVSGF-ILDDA--QTVNLDQACRYAEKLVNLWRSRTGICQQ 551 (578)
T ss_pred cccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccCCcEE-EECCC--ChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 34 4799999999999998754 34567777777887 56543 44556555532 22 22212111122
Q ss_pred HH-HhhcCCcHHHHHHHHHHhCC
Q 008369 520 AK-AMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 520 a~-~~~~~~g~~~av~~i~~~l~ 541 (568)
++ .+.+.-..+..++..++.+.
T Consensus 552 ARe~V~e~FS~e~Mv~~y~ki~~ 574 (578)
T PRK15490 552 TQSFLQERFTVEHMVGTFVKTIA 574 (578)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH
Confidence 22 23344455666666665543
No 134
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.73 E-value=0.11 Score=57.12 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=77.0
Q ss_pred ceEEEcCCCChhhh---hccccEEEEeC---ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHH
Q 008369 425 DFVYLLDNCPHDWL---FSRCLAVVHHG---GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLD 498 (568)
Q Consensus 425 ~nv~~~~~vP~~~l---l~~~~~~I~HG---G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e 498 (568)
..|.+.++....+| +..+.++|.-+ |.+|.+||+.+|+|+| .......|+...-|. .+ -+..
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~-li----~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGY-II----DDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcE-Ee----CCHH
Confidence 68899998885454 79999999877 6689999999999999 344456677777887 55 3678
Q ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 499 KLVDAIRFML-DPKVKEHAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 499 ~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
+|++||..+| +++-...+..-+-+..++-..+..++...+
T Consensus 477 ~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~~ 517 (519)
T TIGR03713 477 ELLKALDYYLDNLKNWNYSLAYSIKLIDDYSSENIIERLNE 517 (519)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999 887777766666655555555555555444
No 135
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.61 E-value=1 Score=46.15 Aligned_cols=53 Identities=17% Similarity=0.275 Sum_probs=44.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC-c-eeeccC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG-L-EFFPLG 176 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G-l-~f~~i~ 176 (568)
||||+-...-||+.-..++.++|+++ +.+|++++.+.+.++++... + +++.++
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~~~~p~vd~v~~~~ 57 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIVRLHPAVDEVIPVA 57 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhhhcCCCccEEEEec
Confidence 68899889999999999999999987 99999999999988887654 3 344443
No 136
>PLN02939 transferase, transferring glycosyl groups
Probab=95.60 E-value=0.14 Score=59.28 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=90.8
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHH---HcCceEEEEcCCCCC---CCCC------CCCceEEEcCCCChh---hhhcc
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALE---ITGHRGIINKGWGGL---GNLA------ESKDFVYLLDNCPHD---WLFSR 441 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~---~~~~~~Iv~~g~~~~---~~l~------~~~~nv~~~~~vP~~---~ll~~ 441 (568)
+++...|.+..... ...+++|+. ..+.++++...+... ..+. ...++|.+.++.+.. .++..
T Consensus 780 pLIg~VGRL~~QKG---iDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah~IYAa 856 (977)
T PLN02939 780 PLVGCITRLVPQKG---VHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSHSIYAA 856 (977)
T ss_pred eEEEEeecCCcccC---hHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHHHHHHh
Confidence 56667777754322 223344443 346777766432111 1111 235689999988865 35799
Q ss_pred ccEEEEeC----ChhHHHHHHHhCCCEEeecCCC--ChhH--HHHHH-HHcCCCCCCCCCCCCCHHHHHHHHHHhc----
Q 008369 442 CLAVVHHG----GAGTTAAGLKAACPTTIVPFFG--DQPF--WGERV-HARGLGPAPIPVEEFSLDKLVDAIRFML---- 508 (568)
Q Consensus 442 ~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~--DQ~~--na~~v-~~~G~G~~~i~~~~lt~e~L~~aI~~lL---- 508 (568)
+|+||.-. -..+.+||+++|+|.|+....| |--. +...+ +..+.|. .++ .-+++.|+++|.+++
T Consensus 857 ADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGf-Lf~--~~D~eaLa~AL~rAL~~~~ 933 (977)
T PLN02939 857 SDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGF-TFL--TPDEQGLNSALERAFNYYK 933 (977)
T ss_pred CCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceE-Eec--CCCHHHHHHHHHHHHHHhc
Confidence 99999753 1368999999999999876544 2111 11111 1234565 343 347888988888764
Q ss_pred -CHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 509 -DPKVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 509 -d~~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
|++.+.++.+ +.+...-.++..++.++++.
T Consensus 934 ~dpe~~~~L~~--~am~~dFSWe~~A~qYeeLY 964 (977)
T PLN02939 934 RKPEVWKQLVQ--KDMNIDFSWDSSASQYEELY 964 (977)
T ss_pred cCHHHHHHHHH--HHHHhcCCHHHHHHHHHHHH
Confidence 4666555543 22444456666666665543
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.22 Score=53.84 Aligned_cols=130 Identities=17% Similarity=0.193 Sum_probs=90.6
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCC----------CC-CCceEEEcCCCChhhh---hcc
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNL----------AE-SKDFVYLLDNCPHDWL---FSR 441 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l----------~~-~~~nv~~~~~vP~~~l---l~~ 441 (568)
-+||++|+......|+-+... .+-++..+--++|.++.++.+.. .. -++++++.+-.|.... +.-
T Consensus 430 avVf~c~~n~~K~~pev~~~w-mqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~i 508 (620)
T COG3914 430 AVVFCCFNNYFKITPEVFALW-MQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGI 508 (620)
T ss_pred eEEEEecCCcccCCHHHHHHH-HHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhch
Confidence 389999999887777644443 77788888888887766432211 11 2578899998887755 477
Q ss_pred ccEEEE---eCChhHHHHHHHhCCCEEeecCCCChhH--HH-HHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 008369 442 CLAVVH---HGGAGTTAAGLKAACPTTIVPFFGDQPF--WG-ERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPK 511 (568)
Q Consensus 442 ~~~~I~---HGG~gT~~EaL~~GvP~vivP~~~DQ~~--na-~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~ 511 (568)
+|+|.- -||+.|+.|+|..|||+|..+ |+||. |+ ..+..+|+-- .+- .-.++=++.|+..-.|..
T Consensus 509 ADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e-~vA--~s~~dYV~~av~~g~dra 579 (620)
T COG3914 509 ADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPE-LVA--DSRADYVEKAVAFGSDRA 579 (620)
T ss_pred hheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCch-hhc--CCHHHHHHHHHHhcccHH
Confidence 999986 599999999999999999975 88874 33 3345666654 232 334566888887655543
No 138
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=95.43 E-value=1.8 Score=44.45 Aligned_cols=96 Identities=14% Similarity=0.190 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHcCceEEEEcCCCCCCC----C---CCCCceEEEcCCC---ChhhhhccccEEEEeCCh-hHHHHHHHh
Q 008369 392 KMTEIIVKALEITGHRGIINKGWGGLGN----L---AESKDFVYLLDNC---PHDWLFSRCLAVVHHGGA-GTTAAGLKA 460 (568)
Q Consensus 392 ~l~~~i~~al~~~~~~~Iv~~g~~~~~~----l---~~~~~nv~~~~~v---P~~~ll~~~~~~I~HGG~-gT~~EaL~~ 460 (568)
++.+.+.+.++..+..+.+.+...-... + -...+.+.+.+-- |+..+|..||.||.-+-. +-+.||++.
T Consensus 169 ~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~DSvSMvsEA~~t 248 (311)
T PF06258_consen 169 RLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTEDSVSMVSEAAAT 248 (311)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCccHHHHHHHHHc
Confidence 5666656666666767776654332111 1 1123455333433 556668999988777775 778999999
Q ss_pred CCCEEeecCCCChhHHH---HHHHHcCCCC
Q 008369 461 ACPTTIVPFFGDQPFWG---ERVHARGLGP 487 (568)
Q Consensus 461 GvP~vivP~~~DQ~~na---~~v~~~G~G~ 487 (568)
|+|+.++|..+-..... +.+++.|+-.
T Consensus 249 G~pV~v~~l~~~~~r~~r~~~~L~~~g~~r 278 (311)
T PF06258_consen 249 GKPVYVLPLPGRSGRFRRFHQSLEERGAVR 278 (311)
T ss_pred CCCEEEecCCCcchHHHHHHHHHHHCCCEE
Confidence 99999999887222222 3335556554
No 139
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.22 E-value=0.46 Score=47.48 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=86.2
Q ss_pred cEEEeCCCCCC-CChHHHHHHHHHHHHHcC--ceEEEEcCCCCC-CC----CC--CCCceEEEcCCCChhh---hhcccc
Q 008369 377 PIYIGFGSLPV-EEPEKMTEIIVKALEITG--HRGIINKGWGGL-GN----LA--ESKDFVYLLDNCPHDW---LFSRCL 443 (568)
Q Consensus 377 ~VyVsfGS~~~-~~~~~l~~~i~~al~~~~--~~~Iv~~g~~~~-~~----l~--~~~~nv~~~~~vP~~~---ll~~~~ 443 (568)
.+++..|.... .....+.+. +..+.... ..+++...+... +. .. ...+++.+.++++.+. ++..++
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~ 278 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEA-AAKLKKRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASAD 278 (381)
T ss_pred eEEEEeeccChhcCHHHHHHH-HHHhhhhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCC
Confidence 56667777543 233333333 33333322 345544333221 00 11 1246788899999333 357789
Q ss_pred EEEEe---CCh-hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHH
Q 008369 444 AVVHH---GGA-GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVE 518 (568)
Q Consensus 444 ~~I~H---GG~-gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~ 518 (568)
++++- .|. .++.|++++|+|+|... .......+.+.+.|. ..... +.+++.+++..++ +++.++...+
T Consensus 279 ~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~~~~g~-~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 279 VFVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVEDGETGL-LVPPG--DVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred EEEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcCCCceE-ecCCC--CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99888 354 44699999999998764 333344444443443 23222 6899999999998 6654554444
Q ss_pred -HHHHhhcCCcHHHHHHHHHH
Q 008369 519 -LAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 519 -la~~~~~~~g~~~av~~i~~ 538 (568)
..+.....-.++...+.+.+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~ 372 (381)
T COG0438 352 AARERVEEEFSWERIAEQLLE 372 (381)
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 33333344555555554443
No 140
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.19 E-value=2.6 Score=43.60 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=40.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G 169 (568)
||||+-..+-||+.-..++.++|++. +.+|++++.+.+.++++...
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p 48 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMP 48 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCc
Confidence 68999999999999999999999886 89999999988888877643
No 141
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.01 E-value=2.3 Score=44.10 Aligned_cols=105 Identities=10% Similarity=0.154 Sum_probs=68.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCC-c-eeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAG-L-EFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~G-l-~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
||||+-..+-||+.-..++.++|+++ +.+|++++.+.+.+.++... + +++.++.... ..
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~----------------~~- 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA----------------KA- 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh----------------cc-
Confidence 68999999999999999999999886 89999999998888887653 3 2344431100 00
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
. ...+..++. ++. .++..++|++|.-....-+..++...|+|.-+-
T Consensus 64 -~--~~~~~~~~~-l~~--------~lr~~~yD~vidl~~~~~s~ll~~l~~a~~riG 109 (344)
T TIGR02201 64 -G--ERKLANQFH-LIK--------VLRANRYDLVVNLTDQWMVAILVKLLNARVKIG 109 (344)
T ss_pred -h--HHHHHHHHH-HHH--------HHHhCCCCEEEECCcchHHHHHHHhcCCCeEEe
Confidence 0 001111111 111 122347999987544455567888999997653
No 142
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=94.99 E-value=0.011 Score=49.37 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=50.1
Q ss_pred CCCChhhHHhhhc--CCCcEEEeCCCCCCC--Ch--HHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEE
Q 008369 361 YEPPDSLVKWLED--GEKPIYIGFGSLPVE--EP--EKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVY 428 (568)
Q Consensus 361 ~~~~~~l~~~L~~--~~p~VyVsfGS~~~~--~~--~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~ 428 (568)
|+.+..+..|+.. +.|.|+|++|+.... .. ...+..+++++..+++.+|+..+....+.+.++|+||+
T Consensus 24 yNG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 24 YNGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp --SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 3455667788875 446899999998643 12 23666679999999999999988777777788899985
No 143
>PRK14099 glycogen synthase; Provisional
Probab=94.74 E-value=0.24 Score=54.26 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=83.7
Q ss_pred cEEEeCCCCCCC-ChHHHHHHHHHHHHHcCceEEEEcCCCC--CCCC----CCCCceE-EEcCCCChh-hhh-ccccEEE
Q 008369 377 PIYIGFGSLPVE-EPEKMTEIIVKALEITGHRGIINKGWGG--LGNL----AESKDFV-YLLDNCPHD-WLF-SRCLAVV 446 (568)
Q Consensus 377 ~VyVsfGS~~~~-~~~~l~~~i~~al~~~~~~~Iv~~g~~~--~~~l----~~~~~nv-~~~~~vP~~-~ll-~~~~~~I 446 (568)
+++...|..... ..+.+.+. +..+...+.++++...+.. ...+ ...++++ .+.++-... .++ ..+|+||
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A-~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~a~aDifv 374 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEA-LPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQAGADALL 374 (485)
T ss_pred cEEEEEecCCccccHHHHHHH-HHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHhcCCEEE
Confidence 454556776533 22233333 2223334677776643221 1111 1234555 677873221 224 5799999
Q ss_pred Ee---CC-hhHHHHHHHhCCCEEeecCCC--ChhHHHH-HHHH--cCCCCCCCCCCCCCHHHHHHHHHH---hc-CHHHH
Q 008369 447 HH---GG-AGTTAAGLKAACPTTIVPFFG--DQPFWGE-RVHA--RGLGPAPIPVEEFSLDKLVDAIRF---ML-DPKVK 513 (568)
Q Consensus 447 ~H---GG-~gT~~EaL~~GvP~vivP~~~--DQ~~na~-~v~~--~G~G~~~i~~~~lt~e~L~~aI~~---lL-d~~~r 513 (568)
.- =| ..+.+||+++|+|.|+....+ |--..+. ..+. .+.|. .++ .-++++|+++|.+ ++ |++.+
T Consensus 375 ~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~-l~~--~~d~~~La~ai~~a~~l~~d~~~~ 451 (485)
T PRK14099 375 VPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGV-QFS--PVTADALAAALRKTAALFADPVAW 451 (485)
T ss_pred ECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceE-EeC--CCCHHHHHHHHHHHHHHhcCHHHH
Confidence 63 33 357889999998777754322 2111110 0011 14676 454 3478999999986 56 77766
Q ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 514 EHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 514 ~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
++..+-+. .+.-.+++.++..+++.
T Consensus 452 ~~l~~~~~--~~~fSw~~~a~~y~~lY 476 (485)
T PRK14099 452 RRLQRNGM--TTDVSWRNPAQHYAALY 476 (485)
T ss_pred HHHHHHhh--hhcCChHHHHHHHHHHH
Confidence 65555432 34456666666665543
No 144
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.61 E-value=1.6 Score=43.66 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHc-CceEEEEcCCCC---------CCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh
Q 008369 391 EKMTEIIVKALEIT-GHRGIINKGWGG---------LGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA 460 (568)
Q Consensus 391 ~~l~~~i~~al~~~-~~~~Iv~~g~~~---------~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~ 460 (568)
..+.+++.++.+.. +.++++ +-... ..........+.+...++-.+|+.+|++|||-.+ ++-.||+.+
T Consensus 140 ~~~~~~l~~~~~~~p~~~lvv-K~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~ 217 (269)
T PF05159_consen 140 ADFLDMLESFAKENPDAKLVV-KPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLH 217 (269)
T ss_pred hHHHHHHHHHHHHCCCCEEEE-EECchhhCCCChhHhhhhhcCCCeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHc
Confidence 44556655555555 556554 32221 1111123455667778898999999999999887 588999999
Q ss_pred CCCEEeec
Q 008369 461 ACPTTIVP 468 (568)
Q Consensus 461 GvP~vivP 468 (568)
|+|++++.
T Consensus 218 gkpVi~~G 225 (269)
T PF05159_consen 218 GKPVIVFG 225 (269)
T ss_pred CCceEEec
Confidence 99999973
No 145
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=94.42 E-value=0.063 Score=48.04 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCchhh--HhcCCceeeccCC
Q 008369 137 QPFVAIGKRLQEDGHRVRLATHANFKDF--VLGAGLEFFPLGG 177 (568)
Q Consensus 137 ~P~laLA~~L~~rGH~V~~~t~~~~~~~--v~~~Gl~f~~i~~ 177 (568)
.-+..|+++|+++||+|++++....... ....|+++..++.
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 47 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPL 47 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccC
Confidence 3467899999999999999986543332 4456788777653
No 146
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.77 E-value=0.31 Score=39.95 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=54.2
Q ss_pred eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHH-HHhhc
Q 008369 448 HGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELA-KAMEN 525 (568)
Q Consensus 448 HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la-~~~~~ 525 (568)
+|-...+.|++++|+|+|.-+- ......+...--++ -.+ +.+++.++|..++ |++.+++.++-+ +.+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~~~~~~---~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFEDGEHII---TYN--DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCCCCeEE---EEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4556789999999999998642 23333322211232 222 8999999999999 887777666655 45555
Q ss_pred CCcHHHHHHHHH
Q 008369 526 EDGVTGAVKAFY 537 (568)
Q Consensus 526 ~~g~~~av~~i~ 537 (568)
....+..++.|.
T Consensus 80 ~~t~~~~~~~il 91 (92)
T PF13524_consen 80 RHTWEHRAEQIL 91 (92)
T ss_pred hCCHHHHHHHHH
Confidence 777776666654
No 147
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=93.60 E-value=2.5 Score=43.91 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=42.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~ 168 (568)
+|||+++-..+-||+.=.+++-+.|+++ +.++++++...+.+.++..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~ 49 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN 49 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC
Confidence 6899999999999999999999999987 5999999999888887664
No 148
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=93.51 E-value=1.1 Score=48.72 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=64.4
Q ss_pred EEEcCCCChhhh---hccccEEEEe---CCh-hHHHHHHHhCCC----EEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 008369 427 VYLLDNCPHDWL---FSRCLAVVHH---GGA-GTTAAGLKAACP----TTIVPFFGDQPFWGERVHARGLGPAPIPVEEF 495 (568)
Q Consensus 427 v~~~~~vP~~~l---l~~~~~~I~H---GG~-gT~~EaL~~GvP----~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~l 495 (568)
+++.++++++++ +..+|+||.- -|. .++.||+++|+| +|+--+.|--.. ...|. .++ .-
T Consensus 343 ~~~~g~v~~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~-lv~--p~ 412 (460)
T cd03788 343 RYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGAL-LVN--PY 412 (460)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCE-EEC--CC
Confidence 345578898877 6999999953 343 578999999999 544433221111 23354 444 34
Q ss_pred CHHHHHHHHHHhc-CH-HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 496 SLDKLVDAIRFML-DP-KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 496 t~e~L~~aI~~lL-d~-~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+.++++++|.+++ ++ +.++...+.+.+.......+.-++.+...|
T Consensus 413 d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 413 DIDEVADAIHRALTMPLEERRERHRKLREYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 6899999999998 43 444443333333334566666666665443
No 149
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=93.46 E-value=3.3 Score=44.48 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=64.9
Q ss_pred hhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-C-HHHHH
Q 008369 437 WLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-D-PKVKE 514 (568)
Q Consensus 437 ~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d-~~~r~ 514 (568)
.++.+||++|..= .-++.-|+..|+|++.+++ | +-....+++.|.....++.++++.++|.+.+.+++ | +++++
T Consensus 323 ~iIs~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~ 398 (426)
T PRK10017 323 KILGACELTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNA 398 (426)
T ss_pred HHHhhCCEEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHHHH
Confidence 4579999999643 3567789999999999987 3 55555668899886347788999999999999999 6 45666
Q ss_pred HHHHHHHHhhc
Q 008369 515 HAVELAKAMEN 525 (568)
Q Consensus 515 ~a~~la~~~~~ 525 (568)
..++..++++.
T Consensus 399 ~l~~~v~~~r~ 409 (426)
T PRK10017 399 RLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHH
Confidence 65555555554
No 150
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.26 E-value=0.62 Score=44.41 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=29.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
||||+.--.+. +---+.+|+++|++.||+|+++.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~ 39 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQ 39 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSST
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 78888765444 5556889999998889999999987654
No 151
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.29 E-value=1.4 Score=47.84 Aligned_cols=103 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred EEEcCCCChhhh---hccccEEEEeC---Ch-hHHHHHHHhCCC----EEeecCCCChhHHHHHHHHcCCCCCCCCCCCC
Q 008369 427 VYLLDNCPHDWL---FSRCLAVVHHG---GA-GTTAAGLKAACP----TTIVPFFGDQPFWGERVHARGLGPAPIPVEEF 495 (568)
Q Consensus 427 v~~~~~vP~~~l---l~~~~~~I~HG---G~-gT~~EaL~~GvP----~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~l 495 (568)
+++.+.++++++ +..+|++|.-. |. .+..|++++|+| +|+--+.|-.. .+ +-|. .++ ..
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~----~l---~~gl-lVn--P~ 407 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQ----EL---NGAL-LVN--PY 407 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChH----Hh---CCcE-EEC--CC
Confidence 445567788776 69999999743 54 588899999999 77766555332 22 2455 454 44
Q ss_pred CHHHHHHHHHHhc-C-H-HHHHHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 496 SLDKLVDAIRFML-D-P-KVKEHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 496 t~e~L~~aI~~lL-d-~-~~r~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
+.+.+++||.++| + + +.+++.+++.+.+.. ..+..-++.+...|
T Consensus 408 d~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~-~~~~~W~~~~l~~l 454 (456)
T TIGR02400 408 DIDGMADAIARALTMPLEEREERHRAMMDKLRK-NDVQRWREDFLSDL 454 (456)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHh
Confidence 7899999999988 3 3 455556666666554 66666666665544
No 152
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=92.20 E-value=8.2 Score=41.10 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=38.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~ 168 (568)
.++||++...|+. ...-...+.++|.+.|++|.++.+++...++...
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~~ 51 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTPL 51 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhHH
Confidence 4578999888876 4457789999999999999999988888777643
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=91.73 E-value=1 Score=41.90 Aligned_cols=110 Identities=18% Similarity=0.213 Sum_probs=60.7
Q ss_pred EEecCCCCChHHHHHHHHHH--HhCCCeEEEEeCCCch--hhHh---cC-C--ceeeccCCChHHHHHHHhhcCCCCCCC
Q 008369 127 MLIVGTRGDVQPFVAIGKRL--QEDGHRVRLATHANFK--DFVL---GA-G--LEFFPLGGDPKILAGYMVKNKGFLPSG 196 (568)
Q Consensus 127 i~~~gs~GHv~P~laLA~~L--~~rGH~V~~~t~~~~~--~~v~---~~-G--l~f~~i~~~~~~l~~~~~~~~~~~~~~ 196 (568)
++..|++||..=|+.|.+.+ ....++..+++..+.. ..++ +. + ..++.++..- . . .
T Consensus 2 l~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r-~--------v-----~ 67 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAR-E--------V-----G 67 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEE-E--------e-----c
Confidence 46678999999999999999 3346777777755432 2111 11 1 0233332110 0 0 0
Q ss_pred CCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcc--cHHHHHHHc------CCCEEEEec
Q 008369 197 PSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAY--GHTHVAESL------KVPLHIIFT 259 (568)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~--~~~~~A~~l------gIP~v~~~t 259 (568)
..........+..++..+. .+...+||+||++-+.. ....+|..+ |.++|.+-+
T Consensus 68 q~~~~~~~~~l~~~~~~~~---------il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES 129 (170)
T PF08660_consen 68 QSYLTSIFTTLRAFLQSLR---------ILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIES 129 (170)
T ss_pred hhhHhhHHHHHHHHHHHHH---------HHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEe
Confidence 0011112233333333222 12234799999986544 466778999 999987654
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.07 E-value=2 Score=38.75 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=23.9
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 008369 132 TRGDVQPFVAIGKRLQEDGHRVRLATHANF 161 (568)
Q Consensus 132 s~GHv~P~laLA~~L~~rGH~V~~~t~~~~ 161 (568)
.+|--.-...|+++|+++||+|++++....
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 556667789999999999999999987643
No 155
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.32 E-value=1.3 Score=44.42 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=61.9
Q ss_pred CCCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHH---HHcCCCCCCCCCCCCCHHHHHHHHHHh
Q 008369 431 DNCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERV---HARGLGPAPIPVEEFSLDKLVDAIRFM 507 (568)
Q Consensus 431 ~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v---~~~G~G~~~i~~~~lt~e~L~~aI~~l 507 (568)
.|-...++|.++|+.|-..| ..+-.++-.|+|+|.+|-.+-|+.-+-.. .-.|+.+..+. -.++.-..+.+++
T Consensus 301 sqqsfadiLH~adaalgmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~---~~aq~a~~~~q~l 376 (412)
T COG4370 301 SQQSFADILHAADAALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR---PEAQAAAQAVQEL 376 (412)
T ss_pred eHHHHHHHHHHHHHHHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC---CchhhHHHHHHHH
Confidence 44445555666666665544 23445677999999999999997655444 23577763222 1233334444558
Q ss_pred c-CHHHHHHHHHHHH-HhhcCCcHHHHHHHHH
Q 008369 508 L-DPKVKEHAVELAK-AMENEDGVTGAVKAFY 537 (568)
Q Consensus 508 L-d~~~r~~a~~la~-~~~~~~g~~~av~~i~ 537 (568)
| |+++..+.+.-.+ ++-+.+.+.+.++.+-
T Consensus 377 l~dp~r~~air~nGqrRiGqaGaa~rIAe~l~ 408 (412)
T COG4370 377 LGDPQRLTAIRHNGQRRIGQAGAARRIAEELG 408 (412)
T ss_pred hcChHHHHHHHhcchhhccCcchHHHHHHHHH
Confidence 8 9999988886544 4444443345555443
No 156
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=88.14 E-value=3.9 Score=40.73 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=57.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc-hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF-KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIP 201 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~-~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (568)
|||+++... |. -..|+++|.++||+|+..+.... .+.+...|..-+..+.. .
T Consensus 1 m~ILvlGGT--~e---gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g~~~v~~g~l----------------------~ 53 (256)
T TIGR00715 1 MTVLLMGGT--VD---SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQALTVHTGAL----------------------D 53 (256)
T ss_pred CeEEEEech--HH---HHHHHHHHHhCCCeEEEEEccCCccccccccCCceEEECCC----------------------C
Confidence 577665443 32 57899999999999998875543 33444443222222210 0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCccc------HHHHHHHcCCCEEEEeccCC
Q 008369 202 IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG------HTHVAESLKVPLHIIFTMPW 262 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~------~~~~A~~lgIP~v~~~t~p~ 262 (568)
...+..++. ..++|+||--.+.|+ +..+|+.+|||++.+---+|
T Consensus 54 --~~~l~~~l~---------------~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~ 103 (256)
T TIGR00715 54 --PQELREFLK---------------RHSIDILVDATHPFAAQITTNATAVCKELGIPYVRFERPPL 103 (256)
T ss_pred --HHHHHHHHH---------------hcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCC
Confidence 122333333 236888886444443 56789999999999876444
No 157
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=88.08 E-value=3.1 Score=38.64 Aligned_cols=33 Identities=30% Similarity=0.425 Sum_probs=27.2
Q ss_pred CCCCcEEEeCCCcccHHHHHHHc-CCCEEEEecc
Q 008369 228 PFKPDAIIANPPAYGHTHVAESL-KVPLHIIFTM 260 (568)
Q Consensus 228 ~~~pDlVI~d~~~~~~~~~A~~l-gIP~v~~~t~ 260 (568)
.|.||+||+.+-.-.++.+-+.+ ++|++.++-.
T Consensus 64 Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 64 GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 67899999997666678888888 9999987654
No 158
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.73 E-value=7.4 Score=42.89 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=83.1
Q ss_pred CcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCC---------CCCCCceEEEcCCCChhhhh---ccc-
Q 008369 376 KPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGN---------LAESKDFVYLLDNCPHDWLF---SRC- 442 (568)
Q Consensus 376 p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~---------l~~~~~nv~~~~~vP~~~ll---~~~- 442 (568)
.+||.+|--....+|+-+ ++-++-|++.+..++|.......++ +.-.|++|.+.+-++-.+-. .-+
T Consensus 759 ~vvf~~FNqLyKidP~~l-~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaD 837 (966)
T KOG4626|consen 759 AVVFCNFNQLYKIDPSTL-QMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLAD 837 (966)
T ss_pred eEEEeechhhhcCCHHHH-HHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhhhh
Confidence 488888888777788744 4447888888887777654332111 11246788887766644332 222
Q ss_pred ---cEEEEeCChhHHHHHHHhCCCEEeecCCCCh-hHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHHHHhcCHHHHHHHH
Q 008369 443 ---LAVVHHGGAGTTAAGLKAACPTTIVPFFGDQ-PFWGERVHARGLGPAPIPVEEFSLDKL-VDAIRFMLDPKVKEHAV 517 (568)
Q Consensus 443 ---~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ-~~na~~v~~~G~G~~~i~~~~lt~e~L-~~aI~~lLd~~~r~~a~ 517 (568)
|-+.+. |..|.++.|++|+|+|.+|.-.-- .--+..+...|+|- .|-. +.++- .-+|+-.+|.++.++.+
T Consensus 838 v~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~h-liak---~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 838 VCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGH-LIAK---NREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHH-HHhh---hHHHHHHHHHHhhcCHHHHHHHH
Confidence 334443 668999999999999999954222 22233346688886 4432 34443 34444444776665544
Q ss_pred H
Q 008369 518 E 518 (568)
Q Consensus 518 ~ 518 (568)
.
T Consensus 913 ~ 913 (966)
T KOG4626|consen 913 A 913 (966)
T ss_pred H
Confidence 4
No 159
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.62 E-value=0.88 Score=40.14 Aligned_cols=46 Identities=22% Similarity=0.347 Sum_probs=38.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAG 169 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~G 169 (568)
|||++...|+.+-.. ...+.++|.++|++|+++.++...+++...+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~~ 46 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPEG 46 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHHG
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhhc
Confidence 689999999877777 9999999999999999998888777776655
No 160
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.36 E-value=37 Score=33.73 Aligned_cols=37 Identities=8% Similarity=0.089 Sum_probs=31.5
Q ss_pred CCCChhhhhccccEEEEeCCh-hHHHHHHHhCCCEEee
Q 008369 431 DNCPHDWLFSRCLAVVHHGGA-GTTAAGLKAACPTTIV 467 (568)
Q Consensus 431 ~~vP~~~ll~~~~~~I~HGG~-gT~~EaL~~GvP~viv 467 (568)
++-|+-++|..+|.+|.-.-. |-..||++.|+|+.+.
T Consensus 234 g~NPY~~~La~Adyii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADYIISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcceEEEecchhhhhHHHhccCCCeEEE
Confidence 445899999999999887765 7778999999999886
No 161
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=83.93 E-value=13 Score=36.66 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=20.0
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 134 GDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 134 GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
|=-.-.-+|+++|++.||+|+++++..
T Consensus 17 GLgdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhcCCeEEEEEccc
Confidence 333456789999999999999998743
No 162
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=83.86 E-value=5.2 Score=44.32 Aligned_cols=103 Identities=10% Similarity=0.025 Sum_probs=57.1
Q ss_pred ChhhhhccccEEEEe---CC-hhHHHHHHHhCCCEEeecCCCChhHHHHHHH-Hc-CCCCCCCCCC----CCCHHHHHHH
Q 008369 434 PHDWLFSRCLAVVHH---GG-AGTTAAGLKAACPTTIVPFFGDQPFWGERVH-AR-GLGPAPIPVE----EFSLDKLVDA 503 (568)
Q Consensus 434 P~~~ll~~~~~~I~H---GG-~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~-~~-G~G~~~i~~~----~lt~e~L~~a 503 (568)
+..+++..||++|.- -| .-+.+||+++|+|+|+....+=- .+..-+. .. ..|+..++.. ..+.++|+++
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~~ 545 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLTQY 545 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHHHH
Confidence 345567899999983 34 36999999999999997643210 1222221 11 2455223222 1246788888
Q ss_pred HHHhcCHHHHHHHHHH--HHHhhcCCcHHHHHHHHH
Q 008369 504 IRFMLDPKVKEHAVEL--AKAMENEDGVTGAVKAFY 537 (568)
Q Consensus 504 I~~lLd~~~r~~a~~l--a~~~~~~~g~~~av~~i~ 537 (568)
|..+++.+.+++.... +++.++.-.++..+....
T Consensus 546 m~~~~~~~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~ 581 (590)
T cd03793 546 MYEFCQLSRRQRIIQRNRTERLSDLLDWRNLGRYYR 581 (590)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8887743333333332 224444444544444433
No 163
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=82.98 E-value=13 Score=38.33 Aligned_cols=106 Identities=22% Similarity=0.167 Sum_probs=67.7
Q ss_pred ChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCCC------CCCceEEEcCCCChhhh---hccccEEEEeCCh----hHH
Q 008369 389 EPEKMTEIIVKALEIT-GHRGIINKGWGGLGNLA------ESKDFVYLLDNCPHDWL---FSRCLAVVHHGGA----GTT 454 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l~------~~~~nv~~~~~vP~~~l---l~~~~~~I~HGG~----gT~ 454 (568)
..+-+.+++-+.+... .+||++...+.....++ .+.++|.+++-+||+.+ |.+-+.|++-.=. .++
T Consensus 209 GiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~i 288 (426)
T KOG1111|consen 209 GIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVI 288 (426)
T ss_pred chHHHHHHHHHHHhcCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHH
Confidence 4445566544555533 67887764333222221 35789999999999987 7889999976542 578
Q ss_pred HHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC-----CCCHHHHHHHHHHhc
Q 008369 455 AAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVE-----EFSLDKLVDAIRFML 508 (568)
Q Consensus 455 ~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~-----~lt~e~L~~aI~~lL 508 (568)
.||+.+|.|+|..- .|-.+..+|.+ +.+.+++.+++.+++
T Consensus 289 vEAaScGL~VVsTr--------------VGGIpeVLP~d~i~~~~~~~~dl~~~v~~ai 333 (426)
T KOG1111|consen 289 VEAASCGLPVVSTR--------------VGGIPEVLPEDMITLGEPGPDDLVGAVEKAI 333 (426)
T ss_pred HHHHhCCCEEEEee--------------cCCccccCCccceeccCCChHHHHHHHHHHH
Confidence 89999999999742 22233234433 334666777776665
No 164
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.95 E-value=1.9 Score=37.46 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.4
Q ss_pred eEEEEEecCCCC---ChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 008369 123 LHIVMLIVGTRG---DVQPFVAIGKRLQEDGHRVRLATHANF 161 (568)
Q Consensus 123 m~Ili~~~gs~G---Hv~P~laLA~~L~~rGH~V~~~t~~~~ 161 (568)
|||+|+.-+-.+ .-.-.++|+.+-++|||+|.+++..++
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 789988776433 445689999999999999999987654
No 165
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=82.61 E-value=13 Score=36.88 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=27.5
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
.+||||+.--.+. |---..+|+++|.+.| +|+++.+...+
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~ 43 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPH 43 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCC
Confidence 4589887543221 3345788999998888 79999876543
No 166
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=21 Score=36.75 Aligned_cols=118 Identities=16% Similarity=0.207 Sum_probs=78.3
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC---CchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCC
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA---NFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSG 196 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~---~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~ 196 (568)
.++-|+.+++.|--||--+|--=|.-|++.|++|.+++-- ...+.++...+.++.++..+ . ....
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~-~-----------~~~~ 77 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP-F-----------LQGG 77 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCc-c-----------cCCC
Confidence 3567899999999999999999999999999999999632 35667777889998887643 1 1111
Q ss_pred CCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe-CCCcccHHHHHHHc----CCCEEEE
Q 008369 197 PSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA-NPPAYGHTHVAESL----KVPLHII 257 (568)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~-d~~~~~~~~~A~~l----gIP~v~~ 257 (568)
+.-+....+-+...+.-+|.... ...+|.++. ||++.....+|..+ |..+++=
T Consensus 78 p~~~~l~lKvf~Qfl~Ll~aL~~--------~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiID 135 (444)
T KOG2941|consen 78 PRVLFLPLKVFWQFLSLLWALFV--------LRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIID 135 (444)
T ss_pred chhhhhHHHHHHHHHHHHHHHHh--------ccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEE
Confidence 22122223444444444444332 236788865 88888777777665 4555553
No 167
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=81.49 E-value=17 Score=35.98 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=27.1
Q ss_pred eEEEEEecCCCC-ChHHHHHHHHHHHhCCCeEEEEeCCCchhh
Q 008369 123 LHIVMLIVGTRG-DVQPFVAIGKRLQEDGHRVRLATHANFKDF 164 (568)
Q Consensus 123 m~Ili~~~gs~G-Hv~P~laLA~~L~~rGH~V~~~t~~~~~~~ 164 (568)
||||+.= --| |---..+|+++|++.| +|+++.+...+.-
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 6777643 233 3344788999999988 8999988765433
No 168
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=80.76 E-value=13 Score=36.82 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=57.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChh
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIP 201 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 201 (568)
+++|+++...+-| ..||+.|.++|++|.+.+...+.. ....+.+...-+- .
T Consensus 2 ~~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat~~g~-~~~~~~~v~~G~l--------------------~--- 52 (248)
T PRK08057 2 MPRILLLGGTSEA-----RALARALAAAGVDIVLSLAGRTGG-PADLPGPVRVGGF--------------------G--- 52 (248)
T ss_pred CceEEEEechHHH-----HHHHHHHHhCCCeEEEEEccCCCC-cccCCceEEECCC--------------------C---
Confidence 5778887766555 478999999999988776544443 2222332221111 0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe--CCCcc----cHHHHHHHcCCCEEEEeccCC
Q 008369 202 IQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA--NPPAY----GHTHVAESLKVPLHIIFTMPW 262 (568)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~--d~~~~----~~~~~A~~lgIP~v~~~t~p~ 262 (568)
....+.+++. +.++++||= .|++. -+..+|+.+|||++.+-.-.|
T Consensus 53 -~~~~l~~~l~---------------~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~ 103 (248)
T PRK08057 53 -GAEGLAAYLR---------------EEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSW 103 (248)
T ss_pred -CHHHHHHHHH---------------HCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCc
Confidence 0233344443 226788774 34332 156789999999999876544
No 169
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=80.05 E-value=16 Score=37.60 Aligned_cols=94 Identities=23% Similarity=0.265 Sum_probs=56.6
Q ss_pred EEEEEecCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC----CceeeccCCChHHHHHHHhhcCCCCC
Q 008369 124 HIVMLIVGTRG-----DVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA----GLEFFPLGGDPKILAGYMVKNKGFLP 194 (568)
Q Consensus 124 ~Ili~~~gs~G-----Hv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~----Gl~f~~i~~~~~~l~~~~~~~~~~~~ 194 (568)
-|+|.+..+.| ...-+..|++.|.++|.+|.+++.++..+..+.- +-..+.+.+
T Consensus 176 ~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g----------------- 238 (334)
T TIGR02195 176 IIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAG----------------- 238 (334)
T ss_pred EEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCC-----------------
Confidence 46666655433 2336899999999889999988776544333211 000000100
Q ss_pred CCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 195 SGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
.. ....+..++. +.|++|++- .+.+|+|.++|+|++.++.
T Consensus 239 --~~----sL~el~ali~-----------------~a~l~I~~D--SGp~HlAaA~~~P~i~lfG 278 (334)
T TIGR02195 239 --ET----SLDEAVDLIA-----------------LAKAVVTND--SGLMHVAAALNRPLVALYG 278 (334)
T ss_pred --CC----CHHHHHHHHH-----------------hCCEEEeeC--CHHHHHHHHcCCCEEEEEC
Confidence 00 1233444444 459999974 3457899999999998765
No 170
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=80.03 E-value=8.3 Score=44.97 Aligned_cols=101 Identities=9% Similarity=0.117 Sum_probs=62.0
Q ss_pred cCCCChhhh---hccccEEEEeC---Chh-HHHHHHHhCCC---EEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCCHH
Q 008369 430 LDNCPHDWL---FSRCLAVVHHG---GAG-TTAAGLKAACP---TTIVPFFGDQPFWGERVHARG-LGPAPIPVEEFSLD 498 (568)
Q Consensus 430 ~~~vP~~~l---l~~~~~~I~HG---G~g-T~~EaL~~GvP---~vivP~~~DQ~~na~~v~~~G-~G~~~i~~~~lt~e 498 (568)
.+.+|.+++ +..+|+||.-. |.| +..|++++|+| ++++.-++- .+.. .| .|+ .++ ..+.+
T Consensus 361 ~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G---~~~~---l~~~al-lVn--P~D~~ 431 (797)
T PLN03063 361 DCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG---AGQS---LGAGAL-LVN--PWNIT 431 (797)
T ss_pred cCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC---chhh---hcCCeE-EEC--CCCHH
Confidence 346676665 69999999664 664 77799999999 555553321 1111 24 344 444 45789
Q ss_pred HHHHHHHHhc--CHHHH-HHHHHHHHHhhcCCcHHHHHHHHHHhC
Q 008369 499 KLVDAIRFML--DPKVK-EHAVELAKAMENEDGVTGAVKAFYKHF 540 (568)
Q Consensus 499 ~L~~aI~~lL--d~~~r-~~a~~la~~~~~~~g~~~av~~i~~~l 540 (568)
.+++||.++| +++.+ ++.+++.+.+.. ..+..-++.|.+.|
T Consensus 432 ~lA~AI~~aL~m~~~er~~r~~~~~~~v~~-~~~~~Wa~~fl~~l 475 (797)
T PLN03063 432 EVSSAIKEALNMSDEERETRHRHNFQYVKT-HSAQKWADDFMSEL 475 (797)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhh-CCHHHHHHHHHHHH
Confidence 9999999988 44444 444445544444 44555555544443
No 171
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=79.15 E-value=14 Score=42.60 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=66.1
Q ss_pred eEEEcCCCChhhh---hccccEEEEeC---C-hhHHHHHHHhCCC---EEeecCC-CChhHHHHHHHHcCCCCCCCCCCC
Q 008369 426 FVYLLDNCPHDWL---FSRCLAVVHHG---G-AGTTAAGLKAACP---TTIVPFF-GDQPFWGERVHARGLGPAPIPVEE 494 (568)
Q Consensus 426 nv~~~~~vP~~~l---l~~~~~~I~HG---G-~gT~~EaL~~GvP---~vivP~~-~DQ~~na~~v~~~G~G~~~i~~~~ 494 (568)
-+++.++++++++ +..+|+|+.-. | -.+..|++++|+| .+++.-+ |.-. +..-|+ .++.
T Consensus 343 v~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~-------~l~~~l-lv~P-- 412 (726)
T PRK14501 343 IHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA-------ELAEAL-LVNP-- 412 (726)
T ss_pred EEEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH-------HhCcCe-EECC--
Confidence 3456788998876 59999999753 4 3688999999775 3333322 3211 111255 4543
Q ss_pred CCHHHHHHHHHHhc-C--HHHHHHHHHHHHHhhcCCcHHHHHHHHHHhCC
Q 008369 495 FSLDKLVDAIRFML-D--PKVKEHAVELAKAMENEDGVTGAVKAFYKHFP 541 (568)
Q Consensus 495 lt~e~L~~aI~~lL-d--~~~r~~a~~la~~~~~~~g~~~av~~i~~~l~ 541 (568)
.+.++++++|.++| + ++.+++.+++.+.+. ...++.-++.+.+.+.
T Consensus 413 ~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~-~~~~~~w~~~~l~~l~ 461 (726)
T PRK14501 413 NDIEGIAAAIKRALEMPEEEQRERMQAMQERLR-RYDVHKWASDFLDELR 461 (726)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 46899999999988 4 344555555555543 4556666666655554
No 172
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=78.68 E-value=13 Score=37.68 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=62.1
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCE
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPT 464 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~ 464 (568)
...+..+.+++.++..++.+++...... .... .+ ....+...+-..+|++|+-||=||+++++.. ++|+
T Consensus 18 ~~~e~~~~i~~~L~~~g~~v~v~~~~~~--~~~~--~~---~~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pi 90 (291)
T PRK02155 18 GIAEPLESLAAFLAKRGFEVVFEADTAR--NIGL--TG---YPALTPEEIGARADLAVVLGGDGTMLGIGRQLAPYGVPL 90 (291)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhh--hcCc--cc---ccccChhHhccCCCEEEEECCcHHHHHHHHHhcCCCCCE
Confidence 3445566667788888888776432111 0000 00 0001223333578999999999999999874 6788
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
+.+-. -.+|. ..+.+.+++.++|..+++.+|
T Consensus 91 lGIn~-------------G~lGF----L~~~~~~~~~~~l~~~~~g~~ 121 (291)
T PRK02155 91 IGINH-------------GRLGF----ITDIPLDDMQETLPPMLAGNY 121 (291)
T ss_pred EEEcC-------------CCccc----cccCCHHHHHHHHHHHHcCCc
Confidence 87741 12344 236678999999999885444
No 173
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=78.23 E-value=20 Score=37.16 Aligned_cols=102 Identities=22% Similarity=0.210 Sum_probs=55.8
Q ss_pred EEEEEecCCCC---C--hHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCC
Q 008369 124 HIVMLIVGTRG---D--VQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPS 198 (568)
Q Consensus 124 ~Ili~~~gs~G---H--v~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~ 198 (568)
-|+|.|..+.| + ..-+..|++.|.++|++|.+++.+.-.+..+.- ....+-+.... ...+. +..
T Consensus 182 ~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i-~~~~~~~~~~~--------~~~l~--g~~ 250 (348)
T PRK10916 182 IIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEI-LAALNTEQQAW--------CRNLA--GET 250 (348)
T ss_pred EEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHH-HHhcccccccc--------eeecc--CCC
Confidence 36666643323 2 234899999999889999988776544332220 00000000000 00000 000
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 199 EIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
....+..++. +.|++|++- .+.+|+|.++|+|++.+|.
T Consensus 251 ----sL~el~ali~-----------------~a~l~I~nD--TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 251 ----QLEQAVILIA-----------------ACKAIVTND--SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred ----CHHHHHHHHH-----------------hCCEEEecC--ChHHHHHHHhCCCEEEEEC
Confidence 1234444444 459999874 3457899999999998875
No 174
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.05 E-value=17 Score=31.27 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=40.0
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
||++.+.++-.|.....-++..|++.|++|..+... ++.+.+.+....++-+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS 57 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLS 57 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 588999999999999999999999999999887543 23344445555554443
No 175
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=77.96 E-value=15 Score=38.06 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=59.5
Q ss_pred CeEEEEEecCCCC-----ChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC--Cceeec-cCCChHHHHHHHhhcCCCC
Q 008369 122 PLHIVMLIVGTRG-----DVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA--GLEFFP-LGGDPKILAGYMVKNKGFL 193 (568)
Q Consensus 122 ~m~Ili~~~gs~G-----Hv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~--Gl~f~~-i~~~~~~l~~~~~~~~~~~ 193 (568)
+..|+|.+..++| -.--+..|++.|.++|.+|.++.++.-.+..+.. ++.... +.+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~---------------- 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAG---------------- 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCC----------------
Confidence 3567777774553 3446899999999999999998877433333221 111000 110
Q ss_pred CCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 194 PSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
... ..++..++. ..|++|++-. +..|+|.++|+|+|.++.
T Consensus 239 ---k~s----L~e~~~li~-----------------~a~l~I~~DS--g~~HlAaA~~~P~I~iyg 278 (334)
T COG0859 239 ---KTS----LEELAALIA-----------------GADLVIGNDS--GPMHLAAALGTPTIALYG 278 (334)
T ss_pred ---CCC----HHHHHHHHh-----------------cCCEEEccCC--hHHHHHHHcCCCEEEEEC
Confidence 111 233344443 5699998743 456899999999998874
No 176
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=76.85 E-value=2.1 Score=46.22 Aligned_cols=66 Identities=15% Similarity=0.036 Sum_probs=48.0
Q ss_pred hHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 008369 452 GTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKA 522 (568)
Q Consensus 452 gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~ 522 (568)
-++.||+++|+|+++.- +-.-+..++..-.|. .++...-....+++++.++. |++++.++.+-+.+
T Consensus 380 iv~IEAMa~glPvvAt~----~GGP~EiV~~~~tG~-l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~ 446 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATN----NGGPAEIVVHGVTGL-LIDPGQEAVAELADALLKLRRDPELWARMGKNGLK 446 (495)
T ss_pred ceeHHHHhcCCCEEEec----CCCceEEEEcCCcce-eeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 48999999999999973 333445556666676 56553222337999999999 99998888776644
No 177
>PRK14098 glycogen synthase; Provisional
Probab=76.73 E-value=3.9 Score=44.87 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=31.4
Q ss_pred CCCCeEEEEEecC------CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 119 GIPPLHIVMLIVG------TRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 119 ~~~~m~Ili~~~g------s~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
+.+||||++++.- +.|=-.-.-+|.++|+++||+|+++.+.
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3577999998741 3444445678899999999999999873
No 178
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=75.92 E-value=29 Score=34.63 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
||||+.--.+. |---+.+|+++|.+.| +|+++.+...+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eq 38 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPK 38 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCC
Confidence 67766543222 4456889999998887 79999876544
No 179
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.23 E-value=17 Score=37.18 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCC-CCC-CCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCC
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGG-LGN-LAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACP 463 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~-~~~-l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP 463 (568)
..++.+.+.+.|+..+..+++...... ... ....+..+-+..+.+...+...+|++|+=||=||++.+... ++|
T Consensus 19 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~aar~~~~~~~P 98 (306)
T PRK03372 19 ATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGDGTILRAAELARAADVP 98 (306)
T ss_pred HHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCCHHHHHHHHHhccCCCc
Confidence 345566667778888888776432111 000 00000000000011112333578999999999999999774 889
Q ss_pred EEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 464 TTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 464 ~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
++.+.. -.+|. ..+...+++.++|+++++.+|
T Consensus 99 ilGIN~-------------G~lGF----L~~~~~~~~~~~l~~i~~g~y 130 (306)
T PRK03372 99 VLGVNL-------------GHVGF----LAEAEAEDLDEAVERVVDRDY 130 (306)
T ss_pred EEEEec-------------CCCce----eccCCHHHHHHHHHHHHcCCc
Confidence 998864 22454 235678999999999985444
No 180
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=74.64 E-value=92 Score=34.15 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=64.1
Q ss_pred ceEEEcCCCChhhh---hccccEEEEe---CChhHHH-HHHHhCC----CEEeecCCCChhHHHHHHHHcCCCCCCCCCC
Q 008369 425 DFVYLLDNCPHDWL---FSRCLAVVHH---GGAGTTA-AGLKAAC----PTTIVPFFGDQPFWGERVHARGLGPAPIPVE 493 (568)
Q Consensus 425 ~nv~~~~~vP~~~l---l~~~~~~I~H---GG~gT~~-EaL~~Gv----P~vivP~~~DQ~~na~~v~~~G~G~~~i~~~ 493 (568)
+-+++.+.+|++++ +..+|+++.- -|+|.++ |.++++. |+|+--|.|=- +...-++ .++
T Consensus 362 pv~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa-------~~l~~Al-lVN-- 431 (487)
T TIGR02398 362 PLQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAA-------VELKGAL-LTN-- 431 (487)
T ss_pred cEEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccch-------hhcCCCE-EEC--
Confidence 44677889998886 5899998864 4888555 9999987 55554333221 3333344 343
Q ss_pred CCCHHHHHHHHHHhc-C--HHHHHHHHHHHHHhhcCCcH
Q 008369 494 EFSLDKLVDAIRFML-D--PKVKEHAVELAKAMENEDGV 529 (568)
Q Consensus 494 ~lt~e~L~~aI~~lL-d--~~~r~~a~~la~~~~~~~g~ 529 (568)
-.+.+++++||..+| . .+-++|.+++.+.+...+-.
T Consensus 432 P~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~d~~ 470 (487)
T TIGR02398 432 PYDPVRMDETIYVALAMPKAEQQARMREMFDAVNYYDVQ 470 (487)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhCCHH
Confidence 557899999999998 3 45566777777776665443
No 181
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=74.55 E-value=18 Score=39.02 Aligned_cols=130 Identities=14% Similarity=0.099 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHc-CceEEEEcCCC---CCCCCCCCCceEEEc-CCCC--hhhhhccccEE--EEeCC--hhHHHHHHH
Q 008369 391 EKMTEIIVKALEIT-GHRGIINKGWG---GLGNLAESKDFVYLL-DNCP--HDWLFSRCLAV--VHHGG--AGTTAAGLK 459 (568)
Q Consensus 391 ~~l~~~i~~al~~~-~~~~Iv~~g~~---~~~~l~~~~~nv~~~-~~vP--~~~ll~~~~~~--I~HGG--~gT~~EaL~ 459 (568)
...++.+....+.. ++.+=+..+.. .+..+... +|+.+. ++.+ .+.++..|++. |+||. ..++.||+.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L~~y-~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSLDKY-DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHHHhc-CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 34455544444444 34444422211 12223234 565555 5566 24567888886 45655 589999999
Q ss_pred hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc-CHHHHHHHHHHHHHhhcCCcHH
Q 008369 460 AACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML-DPKVKEHAVELAKAMENEDGVT 530 (568)
Q Consensus 460 ~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL-d~~~r~~a~~la~~~~~~~g~~ 530 (568)
+|+|++..=.... +...+.. |- .++ .-+.++++++|.++| |++..+.+...++..+..-.++
T Consensus 370 ~G~pI~afd~t~~---~~~~i~~---g~-l~~--~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~~ 432 (438)
T TIGR02919 370 YNLLILGFEETAH---NRDFIAS---EN-IFE--HNEVDQLISKLKDLLNDPNQFRELLEQQREHANDISKE 432 (438)
T ss_pred cCCcEEEEecccC---CcccccC---Cc-eec--CCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCHH
Confidence 9999998743321 1122222 43 333 336799999999999 8876665555555555444443
No 182
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=74.52 E-value=4 Score=38.46 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=39.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCchhhHhcC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQE-DGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~-rGH~V~~~t~~~~~~~v~~~ 168 (568)
|+||++...|+-| ..=...+.++|.+ .||+|+++.+++...++...
T Consensus 1 ~k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~~ 47 (185)
T PRK06029 1 MKRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAHE 47 (185)
T ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHHH
Confidence 5789999988877 6669999999999 59999999998888888643
No 183
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=74.19 E-value=3.8 Score=38.56 Aligned_cols=45 Identities=13% Similarity=0.237 Sum_probs=37.6
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
++||++...|+-|=+. ...+.+.|+++|++|+++.+++...++..
T Consensus 1 ~k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~~ 45 (182)
T PRK07313 1 MKNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFITP 45 (182)
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcCH
Confidence 4689999888776655 79999999999999999988887777753
No 184
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=74.17 E-value=31 Score=34.26 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
||||+.--.+. |---..+|+++|++ +|+|+++.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~q 38 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKER 38 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCC
Confidence 67777543222 33447888999975 6899999876544
No 185
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=72.44 E-value=38 Score=33.59 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=25.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKD 163 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~ 163 (568)
||||+.=--+. |---..+|+++|++ +|+|+++.+...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 67777542211 22237889999975 68999998876543
No 186
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=72.36 E-value=41 Score=34.92 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.6
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
..|++|++- .+.+|+|.++|+|++.++.
T Consensus 262 ~a~l~v~nD--SGp~HlAaA~g~P~v~lfG 289 (352)
T PRK10422 262 HAQLFIGVD--SAPAHIAAAVNTPLICLFG 289 (352)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 459999974 3457899999999998874
No 187
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=72.01 E-value=5.7 Score=37.76 Aligned_cols=46 Identities=11% Similarity=0.066 Sum_probs=36.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
.+||++...|+-|=+.-...++++|.++||+|+++.++...+++..
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~~~~ 50 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTTDTR 50 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHHhhh
Confidence 4689888888665544479999999999999999988876666543
No 188
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=71.83 E-value=6.8 Score=34.98 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=45.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
++.+|++.+.++-+|-.-..-++..|+++|++|+++... ++.+.+.+.+..++-+.
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS 61 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVS 61 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 568899999999999999999999999999999999753 34455555666665554
No 189
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=70.54 E-value=12 Score=35.40 Aligned_cols=52 Identities=15% Similarity=0.199 Sum_probs=32.2
Q ss_pred eEEEEEecCCCCChHH------------HHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccC
Q 008369 123 LHIVMLIVGTRGDVQP------------FVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P------------~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~ 176 (568)
.||+|...|++=.+.| -.+||+++..+||+|++++.+...+ ...+++.+.+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~--~p~~~~~i~v~ 67 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP--PPPGVKVIRVE 67 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS------TTEEEEE-S
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc--ccccceEEEec
Confidence 5677777766655555 4789999999999999998774211 24566666654
No 190
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.26 E-value=27 Score=35.55 Aligned_cols=99 Identities=18% Similarity=0.157 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCE
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPT 464 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~ 464 (568)
...+..+.+.+.+++.+..+.+...... .+. ..+. ..++...+-..+|++|+=||=||+++++.. ++|+
T Consensus 17 ~a~e~~~~i~~~L~~~giev~v~~~~~~--~~~--~~~~---~~~~~~~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pv 89 (295)
T PRK01231 17 SVVETLRRLKDFLLDRGLEVILDEETAE--VLP--GHGL---QTVSRKLLGEVCDLVIVVGGDGSLLGAARALARHNVPV 89 (295)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhh--hcC--cccc---cccchhhcccCCCEEEEEeCcHHHHHHHHHhcCCCCCE
Confidence 4445666667778888888766432111 010 0111 122223333568999999999999999763 7798
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPK 511 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~ 511 (568)
+.+.. -.+|. ....+.+++.++|+.+++.+
T Consensus 90 lgin~-------------G~lGF----l~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 90 LGINR-------------GRLGF----LTDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred EEEeC-------------Ccccc----cccCCHHHHHHHHHHHHcCC
Confidence 88864 13454 23667899999999998543
No 191
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=70.12 E-value=21 Score=37.31 Aligned_cols=108 Identities=14% Similarity=0.108 Sum_probs=64.4
Q ss_pred CCceEEEcC-CCChhhhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCC-----CCCC
Q 008369 423 SKDFVYLLD-NCPHDWLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPV-----EEFS 496 (568)
Q Consensus 423 ~~~nv~~~~-~vP~~~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~-----~~lt 496 (568)
..+++..+. ..+-.++|..+|++||--. +.+.|.+..++|+|....-.|.+.. ..|.-. .... .--+
T Consensus 250 ~~~~i~~~~~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~~~Y~~-----~rg~~~-~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 250 DNSNIIFVSDNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDLEEYEK-----ERGFYF-DYEEDLPGPIVYN 322 (369)
T ss_dssp -TTTEEE-TT-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTTTTTTT-----TSSBSS--TTTSSSS-EESS
T ss_pred cCCcEEECCCCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccHHHHhh-----ccCCCC-chHhhCCCceeCC
Confidence 456777765 4457788999999999885 6899999999999987655554421 123322 1100 1246
Q ss_pred HHHHHHHHHHhc-CH-HHHHHHHHHHHHhh-cCCc--HHHHHHHHH
Q 008369 497 LDKLVDAIRFML-DP-KVKEHAVELAKAME-NEDG--VTGAVKAFY 537 (568)
Q Consensus 497 ~e~L~~aI~~lL-d~-~~r~~a~~la~~~~-~~~g--~~~av~~i~ 537 (568)
.++|.++|+.++ ++ .++++.++..+++- -.+| .+++++.|.
T Consensus 323 ~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 799999999988 44 34555566666653 3444 477777765
No 192
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=70.11 E-value=5.9 Score=38.74 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=31.9
Q ss_pred hhHHhhhc-CCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEc
Q 008369 366 SLVKWLED-GEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINK 412 (568)
Q Consensus 366 ~l~~~L~~-~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~ 412 (568)
++...+.+ .+..+.|+|.-....+.+++.+...+.+.+-+..+|+.-
T Consensus 140 ~il~~~~~~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN 187 (229)
T PRK06732 140 KVISYVKKWNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILAN 187 (229)
T ss_pred HHHHHHHhhCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 33334443 233678998876655566788887888888888888754
No 193
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.90 E-value=28 Score=35.59 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCC---CChhhhhccccEEEEeCChhHHHHHHHh----CC
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDN---CPHDWLFSRCLAVVHHGGAGTTAAGLKA----AC 462 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~---vP~~~ll~~~~~~I~HGG~gT~~EaL~~----Gv 462 (568)
..++.+.+.+.+++.+..+++............ +.+.....- .+...+-..+|++|+=||=||++.+... ++
T Consensus 15 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDGTlL~aar~~~~~~i 93 (305)
T PRK02649 15 AVRTAEELQDKLEAAGWEVVRASSSGGILGYAN-PDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDGTVLSAARQLAPCGI 93 (305)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhcCccc-cccccccccccccChhhcccCcCEEEEEeCcHHHHHHHHHhcCCCC
Confidence 344566667778888888766431111000000 000000000 1112333579999999999999999874 78
Q ss_pred CEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 463 PTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 463 P~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
|++.+-. -.+|. ..+.+.+++.++|+.+++.+|
T Consensus 94 PilGIN~-------------G~lGF----Lt~~~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 94 PLLTINT-------------GHLGF----LTEAYLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cEEEEeC-------------CCCcc----cccCCHHHHHHHHHHHHcCCc
Confidence 9998843 23454 235678999999999985443
No 194
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=69.89 E-value=17 Score=30.48 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=19.6
Q ss_pred CCcEEEeCCCc---ccHHHHHHHcCCCEEE
Q 008369 230 KPDAIIANPPA---YGHTHVAESLKVPLHI 256 (568)
Q Consensus 230 ~pDlVI~d~~~---~~~~~~A~~lgIP~v~ 256 (568)
++|+||..|-. -+-....+..|||++.
T Consensus 62 ~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 62 KIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred CCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 68999997643 3566778889999864
No 195
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=69.65 E-value=8.5 Score=39.44 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=37.0
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeec
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~ 174 (568)
..+|||+|+-.|+-| ..+|..|++.||+|++++... .+.+...|+....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDS 51 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEe
Confidence 355899999777655 356788999999999998765 4567777876654
No 196
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=68.87 E-value=26 Score=37.99 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
..++|+++-.|..| +-++|+.|+++|++|+..
T Consensus 6 ~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~ 37 (461)
T PRK00421 6 RIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGS 37 (461)
T ss_pred CCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEE
Confidence 34678888888655 444899999999999875
No 197
>PRK14099 glycogen synthase; Provisional
Probab=68.73 E-value=7.4 Score=42.63 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=30.2
Q ss_pred CCeEEEEEec---C---CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 121 PPLHIVMLIV---G---TRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 121 ~~m~Ili~~~---g---s~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
++|||++++. | +.|=-.-.-+|.++|+++||+|+++.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5699999874 1 3444455678889999999999999873
No 198
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.64 E-value=29 Score=35.36 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCCCC-CCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHH----hCCCE
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGGLG-NLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLK----AACPT 464 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~~~-~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~----~GvP~ 464 (568)
..++.+.+.+.|++.+..+++-......+ .......+. ...+...+-..+|++|+=||=||++.+.. .++|+
T Consensus 19 ~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~Pi 95 (296)
T PRK04539 19 IQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGC---HIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPI 95 (296)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecccccccchhccccccc---cccchhhcCcCCCEEEEECCcHHHHHHHHHhcccCCCE
Confidence 34556666777888888877632110000 000000011 11122333357999999999999999975 37899
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
+.+-.. .+|. ..+++.+++.++|+.+++.+|
T Consensus 96 lGIN~G-------------~lGF----L~~~~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 96 IGINQG-------------HLGF----LTQIPREYMTDKLLPVLEGKY 126 (296)
T ss_pred EEEecC-------------CCeE----eeccCHHHHHHHHHHHHcCCc
Confidence 988531 2554 135678999999999885444
No 199
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=68.43 E-value=38 Score=36.10 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=47.4
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeeccC
Q 008369 119 GIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFPLG 176 (568)
Q Consensus 119 ~~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~i~ 176 (568)
..++-.|+++-.-+.|-..-.-.||+.|.++|+.|.+++.+.++ ...+..|++||+.+
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~ 162 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSG 162 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCC
Confidence 34567788887778899999999999999999999999877665 23455789998874
No 200
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=68.40 E-value=27 Score=33.96 Aligned_cols=97 Identities=26% Similarity=0.342 Sum_probs=51.4
Q ss_pred CCeEEEEEecCCCC--C--hHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhc--CCce--eeccCCChHHHHHHHhhcC
Q 008369 121 PPLHIVMLIVGTRG--D--VQPFVAIGKRLQEDGHRVRLATHANF--KDFVLG--AGLE--FFPLGGDPKILAGYMVKNK 190 (568)
Q Consensus 121 ~~m~Ili~~~gs~G--H--v~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~--~Gl~--f~~i~~~~~~l~~~~~~~~ 190 (568)
..-.|+|.+..+.. . ..-+..|++.|.++|.+|.++.++.. .+.++. .++. ++.+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAG------------- 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETT-------------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecC-------------
Confidence 34557777665442 1 22379999999999988888877654 222211 1111 122211
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 191 GFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
.. ...++..++. ..|++|+.-. +..|+|.++|+|++.++.
T Consensus 171 ------~~----~l~e~~ali~-----------------~a~~~I~~Dt--g~~HlA~a~~~p~v~lfg 210 (247)
T PF01075_consen 171 ------KT----SLRELAALIS-----------------RADLVIGNDT--GPMHLAAALGTPTVALFG 210 (247)
T ss_dssp ------TS-----HHHHHHHHH-----------------TSSEEEEESS--HHHHHHHHTT--EEEEES
T ss_pred ------CC----CHHHHHHHHh-----------------cCCEEEecCC--hHHHHHHHHhCCEEEEec
Confidence 00 1233344444 4699998643 457899999999998874
No 201
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.08 E-value=29 Score=35.15 Aligned_cols=96 Identities=17% Similarity=0.087 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHH----hCCCE
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLK----AACPT 464 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~----~GvP~ 464 (568)
...++.+.+.+.+++.+..+++-..... .+. .+ ++ +...+...+|++|+-||=||++.++. .++|+
T Consensus 22 ~~~~~~~~i~~~l~~~g~~~~~~~~~~~--~~~-~~------~~-~~~~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~Pi 91 (287)
T PRK14077 22 SLDKEILKLQKILSIYKVEILLEKESAE--ILD-LP------GY-GLDELFKISDFLISLGGDGTLISLCRKAAEYDKFV 91 (287)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhh--hhc-cc------cc-chhhcccCCCEEEEECCCHHHHHHHHHhcCCCCcE
Confidence 3445566667777777887776421111 010 00 11 12333457999999999999998876 37898
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPK 511 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~ 511 (568)
+.+-. -.+|. ..+.+.+++.++++.+++.+
T Consensus 92 lGIN~-------------G~lGF----Lt~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 92 LGIHA-------------GHLGF----LTDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred EEEeC-------------CCccc----CCcCCHHHHHHHHHHHHcCC
Confidence 88742 12454 23567899999999988433
No 202
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=67.94 E-value=36 Score=33.68 Aligned_cols=96 Identities=26% Similarity=0.383 Sum_probs=55.3
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC---CceeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA---GLEFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~---Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
|||+++...+-| ..|++.|.++|+ |.+-+..++...+... +.+. ..++ + .
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~g~~~~~~~~~~~~v-~~G~---------------l----g- 53 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSYGGELLKPELPGLEV-RVGR---------------L----G- 53 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhhhHhhhccccCCceE-EECC---------------C----C-
Confidence 788888776655 479999999998 6555443343333321 1121 1221 0 0
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe--CCCcc----cHHHHHHHcCCCEEEEeccCCC
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA--NPPAY----GHTHVAESLKVPLHIIFTMPWT 263 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~--d~~~~----~~~~~A~~lgIP~v~~~t~p~~ 263 (568)
....+.+++. +.++|+||= .|++. -+..+|+.+|||++.+--..|.
T Consensus 54 ---~~~~l~~~l~---------------~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~ 105 (249)
T PF02571_consen 54 ---DEEGLAEFLR---------------ENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQ 105 (249)
T ss_pred ---CHHHHHHHHH---------------hCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcc
Confidence 0233344443 226788874 33332 2667899999999998765543
No 203
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=67.75 E-value=12 Score=29.77 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=32.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
+.-++++..|...|...+-.+|+.|.+.|..|...=
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 466888889999999999999999999999998763
No 204
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=67.47 E-value=24 Score=28.71 Aligned_cols=32 Identities=38% Similarity=0.530 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCchhhHhcCCcee
Q 008369 139 FVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEF 172 (568)
Q Consensus 139 ~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f 172 (568)
++.+++.|.+.|+++ ++|.. -.+++++.|++.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~g-Ta~~L~~~Gi~~ 33 (90)
T smart00851 2 LVELAKRLAELGFEL-VATGG-TAKFLREAGLPV 33 (90)
T ss_pred HHHHHHHHHHCCCEE-EEccH-HHHHHHHCCCcc
Confidence 468999999999998 46654 467888899875
No 205
>PRK05920 aromatic acid decarboxylase; Validated
Probab=67.23 E-value=8 Score=37.05 Aligned_cols=45 Identities=20% Similarity=0.141 Sum_probs=37.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
++||++...|+-+= .=.+.+.+.|.+.||+|+++.+++...++..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 47899888886655 6889999999999999999998888777753
No 206
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=66.43 E-value=51 Score=32.82 Aligned_cols=100 Identities=22% Similarity=0.369 Sum_probs=55.8
Q ss_pred eEEEEEecCCCC----ChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCC
Q 008369 123 LHIVMLIVGTRG----DVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPS 198 (568)
Q Consensus 123 m~Ili~~~gs~G----Hv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~ 198 (568)
..|+|.+.++.. ...-+..|++.|.++|++|.+++.++..+..+... +.. +... . .. .. +..
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~-~~~--~~~~-~--------~~-~~-~~~ 187 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIA-AAL--GGPR-V--------VN-LA-GKT 187 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHH-Hhc--CCCc-c--------cc-Cc-CCC
Confidence 345555544322 23458999999999899999887765443332210 000 0000 0 00 00 000
Q ss_pred ChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 199 EIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
. ..++..++. +.|++|+.-. +..|+|..+|+|++.++.
T Consensus 188 ~----l~e~~~li~-----------------~~~l~I~~Ds--g~~HlA~a~~~p~i~l~g 225 (279)
T cd03789 188 S----LRELAALLA-----------------RADLVVTNDS--GPMHLAAALGTPTVALFG 225 (279)
T ss_pred C----HHHHHHHHH-----------------hCCEEEeeCC--HHHHHHHHcCCCEEEEEC
Confidence 1 233344443 4599998643 557899999999998875
No 207
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=66.38 E-value=17 Score=33.43 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHh-CCCeEEEEe
Q 008369 135 DVQPFVAIGKRLQE-DGHRVRLAT 157 (568)
Q Consensus 135 Hv~P~laLA~~L~~-rGH~V~~~t 157 (568)
|.+..-+|+++|.+ +|+++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888999999987 565555443
No 208
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=66.10 E-value=58 Score=32.29 Aligned_cols=38 Identities=13% Similarity=0.116 Sum_probs=26.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
||||+.---+. |---+.+|+++|++. |+|+++.+...+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~q 38 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRER 38 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCC
Confidence 67776533221 344478899999988 799999886644
No 209
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=65.82 E-value=84 Score=29.76 Aligned_cols=56 Identities=14% Similarity=0.246 Sum_probs=41.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe----C--CCchhhHhc-CCceeeccCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT----H--ANFKDFVLG-AGLEFFPLGG 177 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t----~--~~~~~~v~~-~Gl~f~~i~~ 177 (568)
.=.|.++...+.|-....+.+|-+...+|++|.++- . ......++. .++++...+.
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~ 84 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGT 84 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCC
Confidence 346788888899999999999999999999999982 2 122334444 3688877764
No 210
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=65.40 E-value=78 Score=32.22 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=34.8
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
.+...|.|.-.|+-|--.-.=+|+++|.++||+|-++.-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAV 87 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAV 87 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEE
Confidence 455788999999999999999999999999999999963
No 211
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=64.99 E-value=70 Score=33.00 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.8
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
+.|++|++- .+.+|+|.++|+|++.++.
T Consensus 260 ~a~l~Vs~D--SGp~HlAaA~g~p~v~Lfg 287 (344)
T TIGR02201 260 HARLFIGVD--SVPMHMAAALGTPLVALFG 287 (344)
T ss_pred hCCEEEecC--CHHHHHHHHcCCCEEEEEC
Confidence 469999973 4567899999999998874
No 212
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=64.32 E-value=34 Score=33.82 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDF 164 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~ 164 (568)
||||+.---+ =|---..+|+++|+ .+++|+++.++..++-
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 6777643222 25555788899999 8999999998765543
No 213
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=64.18 E-value=65 Score=31.84 Aligned_cols=97 Identities=20% Similarity=0.319 Sum_probs=56.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc-hhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCCh
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF-KDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEI 200 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~-~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 200 (568)
+|+|+++...+- ..+|++.|...++.+++.+...+ .+..+..+- ...++ .. .
T Consensus 2 ~~~ilvlGGT~D-----ar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~--~~~~G--------------~l-----~- 54 (257)
T COG2099 2 MMRILLLGGTSD-----ARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP--VRVGG--------------FL-----G- 54 (257)
T ss_pred CceEEEEeccHH-----HHHHHHHhhccCccEEEEEcccccccchhccCC--eeecC--------------cC-----C-
Confidence 467776544332 47899999999988888765433 222322222 11111 00 0
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCccc------HHHHHHHcCCCEEEEeccCCC
Q 008369 201 PIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG------HTHVAESLKVPLHIIFTMPWT 263 (568)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~------~~~~A~~lgIP~v~~~t~p~~ 263 (568)
...+..+++. .+.|+||=-.+.|+ +..+|+..|||++.+---+|.
T Consensus 55 ---~e~l~~~l~e---------------~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~ 105 (257)
T COG2099 55 ---AEGLAAFLRE---------------EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLERPPWA 105 (257)
T ss_pred ---HHHHHHHHHH---------------cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccc
Confidence 2233444432 26788885333332 677899999999998765554
No 214
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=63.36 E-value=1.2e+02 Score=30.98 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=55.3
Q ss_pred ceEEEc-CCCChhh---hhccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 008369 425 DFVYLL-DNCPHDW---LFSRCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFS 496 (568)
Q Consensus 425 ~nv~~~-~~vP~~~---ll~~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt 496 (568)
+++.++ ++.|.++ +|.+||+.|... |.||++-.+..|+|+++-- +=++|.. +.+.|+-+ ....+.++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~gv~V-lf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQGLPV-LFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhCCCeE-EecCCccc
Confidence 676654 5777554 579999977654 7899999999999999853 4455555 55566665 34677888
Q ss_pred HHHHHHHHHHh
Q 008369 497 LDKLVDAIRFM 507 (568)
Q Consensus 497 ~e~L~~aI~~l 507 (568)
...+.++=+.+
T Consensus 281 ~~~v~e~~rql 291 (322)
T PRK02797 281 EDIVREAQRQL 291 (322)
T ss_pred HHHHHHHHHHH
Confidence 87777764443
No 215
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=63.30 E-value=24 Score=37.91 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
++||||++-.|++=| +|++.|++.++-+.+++.
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~ 35 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVF 35 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEE
Confidence 459999998887765 799999998865555543
No 216
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=62.49 E-value=52 Score=33.64 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=22.8
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
..|++|++- .+.+|+|.++|+|.+.+|.
T Consensus 253 ~a~l~I~nD--SGp~HlA~A~g~p~valfG 280 (322)
T PRK10964 253 GAKAVVSVD--TGLSHLTAALDRPNITLYG 280 (322)
T ss_pred hCCEEEecC--CcHHHHHHHhCCCEEEEEC
Confidence 469999974 3457899999999998875
No 217
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=62.32 E-value=50 Score=31.51 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=35.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEE-eCCC---chhhHhcCCceeeccC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLA-THAN---FKDFVLGAGLEFFPLG 176 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~-t~~~---~~~~v~~~Gl~f~~i~ 176 (568)
||||+++..|..+= +.++.+++++. +++|.++ +... ..++.++.|++++.++
T Consensus 1 m~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~~~~~~~~~~a~~~gIp~~~~~ 58 (200)
T PRK05647 1 MKRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISDRPDAYGLERAEAAGIPTFVLD 58 (200)
T ss_pred CceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEecCccchHHHHHHHcCCCEEEEC
Confidence 69999999877433 34666677665 3777765 4322 4466778899887764
No 218
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.97 E-value=62 Score=33.36 Aligned_cols=39 Identities=26% Similarity=0.311 Sum_probs=31.4
Q ss_pred CeEEEEEec-CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIVMLIV-GTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Ili~~~-gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
++||++++. |+-|--.-.-++|-.|++.|.+|.+++.+.
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 478887765 567888888899999999999988886544
No 219
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=61.01 E-value=12 Score=35.39 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=35.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHh
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVL 166 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~ 166 (568)
.||++...|+.|=+.-.+.+.++|.+.|++|+++.++....+..
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~~~~ 44 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQTTDT 44 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHHHHH
Confidence 37888888887777777799999999999999998776555443
No 220
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=61.01 E-value=12 Score=36.75 Aligned_cols=47 Identities=21% Similarity=0.107 Sum_probs=38.7
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcCCc
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGAGL 170 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~Gl 170 (568)
||++...|+.+=+.-.+.|.+.|.+. ||+|+++-+++...++...++
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~~~~ 49 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRMYGL 49 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhhhhh
Confidence 57777777766667899999999999 999999999888888876643
No 221
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=60.94 E-value=1.1e+02 Score=28.58 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=37.1
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEE---eCC---CchhhHhcCCceeeccCC
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA---THA---NFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~---t~~---~~~~~v~~~Gl~f~~i~~ 177 (568)
|.+++..+.|-..-.+.+|-+.+.+|++|.++ -.. .....++..+++|...+.
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~ 66 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGT 66 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCC
Confidence 55566678888888888888889999999766 211 223344555788877764
No 222
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=60.67 E-value=26 Score=32.26 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=46.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~ 177 (568)
.+|||++.-.|+-|--.-...++..|.+.|+.|-=+-.++.++-=...||+.+.+..
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~t 60 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLAT 60 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccC
Confidence 469999999999999999999999999999999766555555555566888888863
No 223
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=60.64 E-value=8.4 Score=37.64 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=52.7
Q ss_pred cCCCcEEEeCCCCCC--CChHHHHHHHHHHHHHcCceEEEEcCCCCC-CC----C-CCCC-ceEEEcCCCChhhh---hc
Q 008369 373 DGEKPIYIGFGSLPV--EEPEKMTEIIVKALEITGHRGIINKGWGGL-GN----L-AESK-DFVYLLDNCPHDWL---FS 440 (568)
Q Consensus 373 ~~~p~VyVsfGS~~~--~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~-~~----l-~~~~-~nv~~~~~vP~~~l---l~ 440 (568)
.+++.|.|..|+... .-+.+....+++.+.+.++++++..+..+. .. + ...+ ..+.+.+-..-.++ +.
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 345667777776532 223344444588887777776665443331 01 1 1111 24666666665443 69
Q ss_pred cccEEEEeCChhHHHHHHHhCCCEEee
Q 008369 441 RCLAVVHHGGAGTTAAGLKAACPTTIV 467 (568)
Q Consensus 441 ~~~~~I~HGG~gT~~EaL~~GvP~viv 467 (568)
+|+++|+.-. |.++=|.+.|+|+|++
T Consensus 183 ~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 183 RADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp TSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred cCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 9999999776 8999999999999998
No 224
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=59.66 E-value=12 Score=37.94 Aligned_cols=47 Identities=23% Similarity=0.319 Sum_probs=34.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeec
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~ 174 (568)
|||+|+-.|+-| ..+|..|++.||+|++++.+...+.+.+.|+....
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~ 47 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRS 47 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEe
Confidence 688888777665 46788899999999999874444556666765543
No 225
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=59.20 E-value=38 Score=34.90 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=48.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeec--cCCChH
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFP--LGGDPK 180 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~--i~~~~~ 180 (568)
++.=|+|+-+.+.|-....-.||+.|.+.|++|.++..+.|+ .+.++.|++++. .+.||.
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA 207 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA 207 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH
Confidence 456677888889999999999999999999999999998876 345567887776 344443
No 226
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.88 E-value=16 Score=36.50 Aligned_cols=56 Identities=14% Similarity=0.062 Sum_probs=42.1
Q ss_pred ccccEEEEeCChhHHHHHHH------hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 440 SRCLAVVHHGGAGTTAAGLK------AACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL~------~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
..+|++|+-||=||++.++. .++|++.+.. -.+|. ..+.+.+++.++++++++.+|
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~-------------G~lGF----L~~~~~~~~~~~l~~i~~g~y 95 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT-------------GHLGF----YTDWRPFEVDKLVIALAKDPG 95 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC-------------CCcee----cccCCHHHHHHHHHHHHcCCc
Confidence 35799999999999999986 4789888752 23444 235678889999999885444
No 227
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=58.63 E-value=11 Score=38.87 Aligned_cols=49 Identities=29% Similarity=0.358 Sum_probs=35.6
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
+|||.|+..|.-| ..+|..|+++||+|+++......+.+...|+.+...
T Consensus 2 ~mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~ 50 (341)
T PRK08229 2 MARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDY 50 (341)
T ss_pred CceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecC
Confidence 5889988777665 467888999999999998654445556667665433
No 228
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=58.45 E-value=48 Score=27.99 Aligned_cols=84 Identities=25% Similarity=0.352 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHH
Q 008369 134 GDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPIQRNQLKEIIYS 213 (568)
Q Consensus 134 GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (568)
.+-.-++.+++.|.+.|+++ ++|. ....++++.|+....+.... .. ...+.+++.
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l-~aT~-gT~~~l~~~gi~~~~v~~~~---------------~~-------~~~i~~~i~- 64 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL-VATE-GTAKYLQEAGIPVEVVNKVS---------------EG-------RPNIVDLIK- 64 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE-EEch-HHHHHHHHcCCeEEEEeecC---------------CC-------chhHHHHHH-
Confidence 35667899999999999998 3554 46678888898865553210 00 012223332
Q ss_pred HhhhcCCCCCCCCCCCCCcEEEeCCC-------cccHHHHHHHcCCCEEE
Q 008369 214 LLPACKDPDPDTMVPFKPDAIIANPP-------AYGHTHVAESLKVPLHI 256 (568)
Q Consensus 214 ~~~~~~~~~~~~~~~~~pDlVI~d~~-------~~~~~~~A~~lgIP~v~ 256 (568)
.-++|+||..+. .+.-...|-..|||+++
T Consensus 65 --------------~~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 65 --------------NGEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred --------------cCCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 226788887432 24456678899999986
No 229
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=58.16 E-value=15 Score=34.23 Aligned_cols=44 Identities=23% Similarity=0.219 Sum_probs=34.6
Q ss_pred EEEEEecCCCCChHH-HHHHHHHHH-hCCCeEEEEeCCCchhhHhcC
Q 008369 124 HIVMLIVGTRGDVQP-FVAIGKRLQ-EDGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P-~laLA~~L~-~rGH~V~~~t~~~~~~~v~~~ 168 (568)
||++...|+ ||... .+.+.++|+ ++||+|.++.+++..++++..
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~~~ 46 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVKWY 46 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHHHH
Confidence 577777776 77755 889999997 469999999988877766543
No 230
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=58.13 E-value=11 Score=38.13 Aligned_cols=45 Identities=29% Similarity=0.447 Sum_probs=31.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC-CCchhhHhcCCcee
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH-ANFKDFVLGAGLEF 172 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~-~~~~~~v~~~Gl~f 172 (568)
|||+|+-.|+-| ..+|..|++.||+|+++.. +...+.+...|+..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~ 46 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARRGAHLDALNENGLRL 46 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcc
Confidence 678777666555 5678889999999999986 33344455556543
No 231
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=58.04 E-value=21 Score=38.87 Aligned_cols=55 Identities=15% Similarity=0.163 Sum_probs=41.9
Q ss_pred CCCeEEEEEecCCCCChHHH------------HHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccC
Q 008369 120 IPPLHIVMLIVGTRGDVQPF------------VAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~------------laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~ 176 (568)
-..+||+|...|++=.+.|. .+||+++..+|++|++++.+.... ...|++++++.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~--~p~~v~~i~V~ 320 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA--DPQGVKVIHVE 320 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC--CCCCceEEEec
Confidence 35689999999999888874 899999999999999998654211 33556666554
No 232
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.69 E-value=76 Score=32.26 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHH----hCCCEE
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLK----AACPTT 465 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~----~GvP~v 465 (568)
..++.+.+.+.|++.+..+++-..... .+ .. .+ ....+...+...+|++|+=||=||++.++. .++|++
T Consensus 19 ~~~~~~~i~~~l~~~g~~v~~~~~~~~--~~-~~-~~---~~~~~~~~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pil 91 (292)
T PRK03378 19 ALTTHEMLYHWLTSKGYEVIVEQQIAH--EL-QL-KN---VKTGTLAEIGQQADLAIVVGGDGNMLGAARVLARYDIKVI 91 (292)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhh--hc-Cc-cc---ccccchhhcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEE
Confidence 344556666667777887765321110 00 00 00 011122333457999999999999999985 367888
Q ss_pred eecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 466 IVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 466 ivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
.+-.. .+|. ..+++++++.++++++++.+|
T Consensus 92 gin~G-------------~lGF----l~~~~~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 92 GINRG-------------NLGF----LTDLDPDNALQQLSDVLEGHY 121 (292)
T ss_pred EEECC-------------CCCc----ccccCHHHHHHHHHHHHcCCc
Confidence 77531 1354 235678999999999985444
No 233
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=57.61 E-value=1.4e+02 Score=31.07 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=58.3
Q ss_pred ceEEE-cCCCChhh---hhccccEEEEeC----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCC
Q 008369 425 DFVYL-LDNCPHDW---LFSRCLAVVHHG----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFS 496 (568)
Q Consensus 425 ~nv~~-~~~vP~~~---ll~~~~~~I~HG----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt 496 (568)
+++.+ .++.|.++ +|.+||+.|..- |.|+++-.|..|+|+++-- +=++| +.+.+.|+-+ .-..++++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~-~~l~~~~ipV-lf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFW-QDLKEQGIPV-LFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHH-HHHHhCCCeE-EeccccCC
Confidence 57765 46888665 469999988764 7899999999999999852 33444 4445557665 45557899
Q ss_pred HHHHHHHHHHhc
Q 008369 497 LDKLVDAIRFML 508 (568)
Q Consensus 497 ~e~L~~aI~~lL 508 (568)
...+++|=+.+.
T Consensus 320 ~~~v~ea~rql~ 331 (360)
T PF07429_consen 320 EALVREAQRQLA 331 (360)
T ss_pred HHHHHHHHHHHh
Confidence 999998888765
No 234
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=57.51 E-value=12 Score=35.08 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=34.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
||++...|+-|-+. ...+.+.|.++|++|+++.+++...++..
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~A~~fv~~ 43 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDWAKETIKY 43 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 56777777655544 48899999999999999999988888753
No 235
>PLN02939 transferase, transferring glycosyl groups
Probab=57.28 E-value=19 Score=42.40 Aligned_cols=41 Identities=29% Similarity=0.388 Sum_probs=31.3
Q ss_pred CCCCeEEEEEec---C---CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 119 GIPPLHIVMLIV---G---TRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 119 ~~~~m~Ili~~~---g---s~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
..++|||++++. | ++|=-.-.-+|.++|++.||+|+++++.
T Consensus 478 ~~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 478 TSSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 357799999863 1 3344445678899999999999999874
No 236
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=57.23 E-value=69 Score=29.13 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=58.4
Q ss_pred EEEEEecCCCCChHH----HHHHHHHHHhC-CCeEEEEeCCC---chhh----HhcCCc-eeeccCCChHHHHHHHhhcC
Q 008369 124 HIVMLIVGTRGDVQP----FVAIGKRLQED-GHRVRLATHAN---FKDF----VLGAGL-EFFPLGGDPKILAGYMVKNK 190 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P----~laLA~~L~~r-GH~V~~~t~~~---~~~~----v~~~Gl-~f~~i~~~~~~l~~~~~~~~ 190 (568)
+|+++.--..|.++| .+..|++|++. |.+|+.++-.+ ..+. +...|. +.+.+..+..
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~G~d~v~~~~~~~~---------- 70 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKYGADKVYHIDDPAL---------- 70 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHSTTESEEEEEE-GGG----------
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhcCCcEEEEecCccc----------
Confidence 566666656777777 58889999774 88988885432 3333 444776 4555542210
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCccc---HHHHHHHcCCCEEEEe
Q 008369 191 GFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG---HTHVAESLKVPLHIIF 258 (568)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~---~~~~A~~lgIP~v~~~ 258 (568)
. . .........+.++++. .+||+|+......+ +..+|.+||.|++.-.
T Consensus 71 --~--~-~~~~~~a~~l~~~~~~---------------~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 71 --A--E-YDPEAYADALAELIKE---------------EGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp --T--T-C-HHHHHHHHHHHHHH---------------HT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred --c--c-cCHHHHHHHHHHHHHh---------------cCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 0 0 0011112233333332 16899998665543 5678999999998644
No 237
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.07 E-value=55 Score=35.49 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=24.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
..||+|+-.|..| +++|+.|.++|++|++.-
T Consensus 14 ~~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~D 44 (458)
T PRK01710 14 NKKVAVVGIGVSN-----IPLIKFLVKLGAKVTAFD 44 (458)
T ss_pred CCeEEEEcccHHH-----HHHHHHHHHCCCEEEEEC
Confidence 3578888777655 499999999999998864
No 238
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=56.75 E-value=64 Score=34.84 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
.+||+++-.|-.| +++++.|.++|++|++.-...
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~ 40 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRP 40 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCC
Confidence 6899999999877 999999999999999985433
No 239
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=56.38 E-value=29 Score=30.75 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=44.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC----CCchhhHhcCCceeeccCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH----ANFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~----~~~~~~v~~~Gl~f~~i~~ 177 (568)
+.||++...+.-+|-..---++..|+..|++|.-... +.+.+.+.+.+..++-+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 5799999999999999999999999999999998854 3344555566777776654
No 240
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=56.02 E-value=51 Score=38.66 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=24.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
+.+|+|+-.|..| +-+||+.|.++|++|+..
T Consensus 4 ~~~i~viG~G~sG----~salA~~L~~~G~~V~~s 34 (809)
T PRK14573 4 SLFYHFIGIGGIG----MSALAHILLDRGYSVSGS 34 (809)
T ss_pred cceEEEEEecHHh----HHHHHHHHHHCCCeEEEE
Confidence 4468888877655 667899999999999875
No 241
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=55.18 E-value=27 Score=29.79 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
.|+++...+..-|-.-...++..|+++||+|.++-.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 378889999999999999999999999999999844
No 242
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=55.18 E-value=69 Score=27.32 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=32.3
Q ss_pred EEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 127 MLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 127 i~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
+++.+.. +=.-++.+++.|.+.|.+| ++| +...+++.+.|++...+
T Consensus 4 lisv~~~-dk~~~~~~a~~l~~~G~~i-~aT-~gTa~~L~~~gi~~~~v 49 (116)
T cd01423 4 LISIGSY-SKPELLPTAQKLSKLGYKL-YAT-EGTADFLLENGIPVTPV 49 (116)
T ss_pred EEecCcc-cchhHHHHHHHHHHCCCEE-EEc-cHHHHHHHHcCCCceEe
Confidence 3344433 5566889999999999988 344 45566777888876554
No 243
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=55.17 E-value=52 Score=35.54 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=21.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
|-|+..|+-| |-+||+.|+++|++|+..
T Consensus 2 ~hfigigG~g----m~~la~~l~~~G~~V~~~ 29 (448)
T TIGR01081 2 IHILGICGTF----MGGLAMIAKQLGHEVTGS 29 (448)
T ss_pred EEEEEECHHh----HHHHHHHHHhCCCEEEEE
Confidence 4455555443 889999999999999875
No 244
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=54.91 E-value=8.6 Score=35.98 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=34.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
||++...|+.| ..-...+.++|+++|++|+++.+++...++..
T Consensus 2 ~I~lgvtGs~~-a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~~ 44 (177)
T TIGR02113 2 KILLAVTGSIA-AYKAADLTSQLTKLGYDVTVLMTQAATQFITP 44 (177)
T ss_pred EEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEEChHHHhhccH
Confidence 68887777654 44566999999999999999988887777753
No 245
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=54.61 E-value=57 Score=32.63 Aligned_cols=57 Identities=21% Similarity=0.318 Sum_probs=41.6
Q ss_pred ccccEEEEeCChhHHHHHHHh-----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 440 SRCLAVVHHGGAGTTAAGLKA-----ACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL~~-----GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
..+|++|+=||=||++.++.. .+|++.+...| .+|. ..+.+.+++.+++..+++.+|
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGF----L~~~~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGF----YCDFHIDDLDKMIQAITKEEI 99 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeE----cccCCHHHHHHHHHHHHcCCc
Confidence 347999999999999999874 56777765311 3454 236678999999999884433
No 246
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=53.51 E-value=73 Score=33.59 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=63.2
Q ss_pred ceEEEcCCCCh-h---hhhccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 008369 425 DFVYLLDNCPH-D---WLFSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKL 500 (568)
Q Consensus 425 ~nv~~~~~vP~-~---~ll~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L 500 (568)
.++.+... ++ + .++.+|+++|. .=+-++..|++.|+|.+++- =|+.....+++.|.--..++...++.+.+
T Consensus 266 ~~i~~~~d-~~~~~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~---Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l 340 (385)
T COG2327 266 AEILVSSD-EYAEELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIA---YDPKVRGLMQDLGLPGFAIDIDPLDAEIL 340 (385)
T ss_pred cceEeecc-hHHHHHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEe---ecHHHHHHHHHcCCCcccccCCCCchHHH
Confidence 56665543 33 2 23689999884 34678999999999999984 35666677888888533677889999999
Q ss_pred HHHHHHhc--CHHHHHH
Q 008369 501 VDAIRFML--DPKVKEH 515 (568)
Q Consensus 501 ~~aI~~lL--d~~~r~~ 515 (568)
.+++.+.+ .++.+++
T Consensus 341 ~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 341 SAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHhccHHHHhh
Confidence 99998776 5666555
No 247
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=52.84 E-value=14 Score=40.94 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=49.4
Q ss_pred ChhhhhccccEEEEeC-----ChhHHHHHHHhCCCEEeecCCCChhHHHHHHH-----HcCCCCCCCCCCCCCHHHHHHH
Q 008369 434 PHDWLFSRCLAVVHHG-----GAGTTAAGLKAACPTTIVPFFGDQPFWGERVH-----ARGLGPAPIPVEEFSLDKLVDA 503 (568)
Q Consensus 434 P~~~ll~~~~~~I~HG-----G~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~-----~~G~G~~~i~~~~lt~e~L~~a 503 (568)
++.+++..|++-|.-. | -|-+||.+.|+|+|.--+.| -+..+. ..--|+..++...-+.++.++.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWG-YTPlE~~a~gVPsITTnLsG----FG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v~~ 536 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWG-YTPLECTAFGVPSITTNLSG----FGCWMQEHIEDPEEYGVYVVDRRDKNYDESVNQ 536 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS--HHHHHHHHTT--EEEETTBH----HHHHHHTTS-HHGGGTEEEE-SSSS-HHHHHHH
T ss_pred CHHHHhccCceeeecccccccc-CChHHHhhcCCceeeccchh----HHHHHHHhhccCcCCcEEEEeCCCCCHHHHHHH
Confidence 5677788899988877 4 48999999999999975432 222221 1223554577778888777777
Q ss_pred HHHhc-C-----H----HHHHHHHHHHHHh
Q 008369 504 IRFML-D-----P----KVKEHAVELAKAM 523 (568)
Q Consensus 504 I~~lL-d-----~----~~r~~a~~la~~~ 523 (568)
|...| + . ..|.++.++++.+
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 76554 3 2 3455566555443
No 248
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=52.69 E-value=54 Score=34.71 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=32.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCC-CeEEEEeCC-CchhhHhcC---CceeeccC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDG-HRVRLATHA-NFKDFVLGA---GLEFFPLG 176 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rG-H~V~~~t~~-~~~~~v~~~---Gl~f~~i~ 176 (568)
||||+++-.|.-|+ .+|+-|+++| ++|++++-. +....+... .+++..++
T Consensus 1 m~~ilviGaG~Vg~-----~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD 55 (389)
T COG1748 1 MMKILVIGAGGVGS-----VVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVD 55 (389)
T ss_pred CCcEEEECCchhHH-----HHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEec
Confidence 68888876655443 5789999999 999999754 233333333 35555553
No 249
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.40 E-value=71 Score=31.43 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHhCC-CeEEEEeCCC------chhhHhcCCceeeccCC
Q 008369 135 DVQPFVAIGKRLQEDG-HRVRLATHAN------FKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 135 Hv~P~laLA~~L~~rG-H~V~~~t~~~------~~~~v~~~Gl~f~~i~~ 177 (568)
=++|..++.++|+..| .+|.++|+.. ..+++++.|++...+.+
T Consensus 104 ~tt~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~ 153 (239)
T TIGR02990 104 VVTPSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTC 153 (239)
T ss_pred eeCHHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeec
Confidence 4578999999999988 7788888743 55788899999887753
No 250
>PRK10867 signal recognition particle protein; Provisional
Probab=51.53 E-value=69 Score=34.50 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=42.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCchhh--------HhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQED-GHRVRLATHANFKDF--------VLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~r-GH~V~~~t~~~~~~~--------v~~~Gl~f~~i~ 176 (568)
++.-|+++..++.|=-.-...||..|+++ |++|.+++.+.++.. .+..|++++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~ 163 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSG 163 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecC
Confidence 34455566666889999999999999998 999999988766532 355677776653
No 251
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.51 E-value=29 Score=35.30 Aligned_cols=104 Identities=16% Similarity=0.102 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCC-CCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCE
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGG-LGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPT 464 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~-~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~ 464 (568)
..++.+.+.+.+++.+..+++-..... ........++. ....+...+...+|++|+=||=||++.++.. ++|+
T Consensus 14 ~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~Pi 91 (292)
T PRK01911 14 ASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSY--DTFSDNEELDGSADMVISIGGDGTFLRTATYVGNSNIPI 91 (292)
T ss_pred HHHHHHHHHHHHHHCCCEEEEecchhhhhcccccccccc--ccccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCE
Confidence 345566667778888888776321111 00000000000 0010223333578999999999999999883 7899
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
+.+-.. .+|. ..+.+.+++.++++.+++.+|
T Consensus 92 lGIN~G-------------~lGF----Lt~~~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 92 LGINTG-------------RLGF----LATVSKEEIEETIDELLNGDY 122 (292)
T ss_pred EEEecC-------------CCCc----ccccCHHHHHHHHHHHHcCCc
Confidence 987531 2454 235678999999999985444
No 252
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=51.25 E-value=1.5e+02 Score=29.59 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=24.3
Q ss_pred eEEEEEecCCCC-ChHHHHHHHHHHHhC---CCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRG-DVQPFVAIGKRLQED---GHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~G-Hv~P~laLA~~L~~r---GH~V~~~t~~~~~ 162 (568)
||||+.= --| |---+.+|+++|.+. |++|+++.+...+
T Consensus 1 M~ILlTN--DDGI~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eq 42 (261)
T PRK13931 1 MRILITN--DDGINAPGLEVLEQIATELAGPDGEVWTVAPAFEQ 42 (261)
T ss_pred CeEEEEc--CCCCCCHhHHHHHHHHHHhccCCCeEEEEeCCCCC
Confidence 5666643 223 334467788888763 4799999876544
No 253
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=51.06 E-value=82 Score=32.01 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=22.5
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
..|++|++-. +.+|+|..+|+|++.++.
T Consensus 254 ~a~l~I~~DS--gp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 254 GADAVVGVDT--GLTHLAAALDKPTVTLYG 281 (319)
T ss_pred cCCEEEeCCC--hHHHHHHHcCCCEEEEEC
Confidence 4699999743 457899999999998874
No 254
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=51.05 E-value=62 Score=34.92 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=21.9
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
+|.|+-.|..| +-++|+.|+++|++|+..
T Consensus 1 ~~~~iGiggsG----m~~la~~L~~~G~~v~~~ 29 (448)
T TIGR01082 1 KIHFVGIGGIG----MSGIAEILLNRGYQVSGS 29 (448)
T ss_pred CEEEEEECHHH----HHHHHHHHHHCCCeEEEE
Confidence 35666666544 556999999999999875
No 255
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=50.81 E-value=1.7e+02 Score=27.76 Aligned_cols=55 Identities=9% Similarity=-0.121 Sum_probs=44.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
.-+|++.+.++-.|-....-++..|..+|++|+++... ++.+.++..+..++-+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 35899999999999999999999999999999999653 35556666666666654
No 256
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=50.70 E-value=1.3e+02 Score=32.32 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=21.4
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+||++|.++. +..+|+++|||++.+.
T Consensus 350 ~pDl~Ig~s~---~~~~a~~~giP~~r~~ 375 (416)
T cd01980 350 RPDLAIGTTP---LVQYAKEKGIPALYYT 375 (416)
T ss_pred CCCEEEeCCh---hhHHHHHhCCCEEEec
Confidence 7999999843 4679999999998753
No 257
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.70 E-value=85 Score=34.41 Aligned_cols=30 Identities=27% Similarity=0.509 Sum_probs=24.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
.+|+|+-.|..| +++|+.|+++|++|+..=
T Consensus 8 ~~i~v~G~G~sG-----~s~a~~L~~~G~~v~~~D 37 (498)
T PRK02006 8 PMVLVLGLGESG-----LAMARWCARHGARLRVAD 37 (498)
T ss_pred CEEEEEeecHhH-----HHHHHHHHHCCCEEEEEc
Confidence 478888887766 459999999999998753
No 258
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=50.62 E-value=9.8 Score=34.65 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=25.5
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
||.++..|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 566666665554 89999999999999998864
No 259
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.50 E-value=77 Score=33.37 Aligned_cols=51 Identities=18% Similarity=0.300 Sum_probs=40.8
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch----h----hHhcCCceeecc
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK----D----FVLGAGLEFFPL 175 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~----~----~v~~~Gl~f~~i 175 (568)
|+|+-.-+.|-...+-.+|..++++|+.|.+++.+.|+ + .....+++||--
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygs 162 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGS 162 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEec
Confidence 55556668889999999999999999999999988765 2 234567888764
No 260
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=49.92 E-value=50 Score=31.08 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=43.9
Q ss_pred cCCCCChHHHHHHHHHHHhC--CCeEEEEeC-CCchhhHhcC---CceeeccCCChHHHHHHHhhcCCCCCCCCCChhHH
Q 008369 130 VGTRGDVQPFVAIGKRLQED--GHRVRLATH-ANFKDFVLGA---GLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPIQ 203 (568)
Q Consensus 130 ~gs~GHv~P~laLA~~L~~r--GH~V~~~t~-~~~~~~v~~~---Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 203 (568)
..|-|-++-...|+++|.++ |++|.+-|. +...+.+++. .+....+|.| .
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D---------------------~--- 83 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD---------------------F--- 83 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S---------------------S---
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc---------------------C---
Confidence 44789999999999999887 898888865 3333333222 2222223222 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCccc--HHHHHHHcCCCEEEEec
Q 008369 204 RNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPAYG--HTHVAESLKVPLHIIFT 259 (568)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~~~--~~~~A~~lgIP~v~~~t 259 (568)
...+..++... +||++|.--.-+| -+..|+..|||++++..
T Consensus 84 ~~~~~rfl~~~---------------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 PWAVRRFLDHW---------------RPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp HHHHHHHHHHH-----------------SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred HHHHHHHHHHh---------------CCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 12233444432 6899876433343 55668888999988653
No 261
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=49.64 E-value=1.8e+02 Score=31.46 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=27.0
Q ss_pred EEEEEecC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~g-s~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+|+|.... .-|=-.-..+|++.|+++|++|..+-.
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 45555443 457778889999999999999998854
No 262
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=49.60 E-value=1.1e+02 Score=30.93 Aligned_cols=55 Identities=7% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHh--CCCeEEEE-e-CCCchhhHhcCCceeeccC
Q 008369 119 GIPPLHIVMLIVGTRGDVQPFVAIGKRLQE--DGHRVRLA-T-HANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 119 ~~~~m~Ili~~~gs~GHv~P~laLA~~L~~--rGH~V~~~-t-~~~~~~~v~~~Gl~f~~i~ 176 (568)
..++|||+++..|+ |+- +.+|.++.+. .+++|.++ + +++.....++.|++++.++
T Consensus 86 ~~~~~ri~vl~Sg~-g~n--l~al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 86 PAARPKVLIMVSKF-DHC--LNDLLYRWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred cccCceEEEEEcCC-ccc--HHHHHHHHHcCCCCcEEEEEEECCccHHHHHHHhCCCEEEeC
Confidence 44678999999985 332 3344444433 36888886 4 4567777888999988775
No 263
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=49.39 E-value=88 Score=32.42 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=27.1
Q ss_pred hccccEEEEeCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCC
Q 008369 439 FSRCLAVVHHGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGL 485 (568)
Q Consensus 439 l~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~ 485 (568)
++.-+..++|||+..... +.-|-.++|+ +-.+.+++.|.
T Consensus 266 l~~~~~~~~HgGYD~~~a---n~D~N~v~Pl-----D~LreL~~EG~ 304 (349)
T PF07355_consen 266 LSSDDYMTIHGGYDPAYA---NEDPNRVFPL-----DRLRELEKEGV 304 (349)
T ss_pred CCccceEeeccccChhHh---ccCCCeeeeH-----HHHHHHHHcCC
Confidence 566788999999977653 4778888883 34455655554
No 264
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=49.23 E-value=1.3e+02 Score=28.86 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=34.1
Q ss_pred EEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch---hhHhcCCceeeccC
Q 008369 127 MLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK---DFVLGAGLEFFPLG 176 (568)
Q Consensus 127 i~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~---~~v~~~Gl~f~~i~ 176 (568)
|+..|+.|.+- ..+++.|.+.||+|+.++.+.-. +.++..|.+.+...
T Consensus 1 I~V~GatG~~G--~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d 51 (233)
T PF05368_consen 1 ILVTGATGNQG--RSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEAD 51 (233)
T ss_dssp EEEETTTSHHH--HHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-
T ss_pred CEEECCccHHH--HHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecc
Confidence 34566666654 56788888899999999987633 34566888887554
No 265
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.81 E-value=93 Score=33.44 Aligned_cols=32 Identities=25% Similarity=0.424 Sum_probs=22.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
.+|+|+ |+ |. .- +++|+.|+++|++|++....
T Consensus 6 k~v~ii--G~-g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVV--GA-GV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEE--CC-CH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 456554 33 33 33 49999999999999988654
No 266
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=48.64 E-value=96 Score=34.02 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=25.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~ 158 (568)
||||++..|++.| +|+++|++. |++|..+-.
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999988887766 688888876 999988844
No 267
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=48.52 E-value=74 Score=34.77 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=41.1
Q ss_pred ccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 008369 440 SRCLAVVHHGGAGTTAAGLKA----ACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPK 511 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL~~----GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~ 511 (568)
..+|++|+=||=||++-+... ++|++.+- --.+|. ..+++.+++.++|..+++.+
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN-------------~G~LGF----Lt~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFS-------------MGSLGF----MTPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe-------------CCCcce----ecccCHHHHHHHHHHHHcCC
Confidence 579999999999999999874 56877662 112454 13567899999999998443
No 268
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.19 E-value=28 Score=35.12 Aligned_cols=98 Identities=17% Similarity=0.103 Sum_probs=60.0
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhh-hccccEEEEeCChhHHHHHHH---hCCCE
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWL-FSRCLAVVHHGGAGTTAAGLK---AACPT 464 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~l-l~~~~~~I~HGG~gT~~EaL~---~GvP~ 464 (568)
...++.+.+.+.|++.+..+.+...... ...... ..+...+ -..+|++|.-||=||+.+++. .++|+
T Consensus 13 ~~~~~~~~I~~~L~~~g~~v~v~~~~~~--~~~~~~-------~~~~~~~~~~~~d~vi~iGGDGTlL~a~~~~~~~~pi 83 (277)
T PRK03708 13 EALKLAYRVYDFLKVSGYEVVVDSETYE--HLPEFS-------EEDVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIPI 83 (277)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEecchhh--hcCccc-------ccccccccccCCCEEEEEeCcHHHHHHHHhcCCCCeE
Confidence 3445677777788888888776421110 000000 0000011 136899999999999999985 35688
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
+.+|... +|. + ..++.+++.+++..+++.+|
T Consensus 84 ~gIn~G~-------------lGF--l--~~~~~~~~~~~l~~i~~g~~ 114 (277)
T PRK03708 84 LGINMGT-------------LGF--L--TEVEPEETFFALSRLLEGDY 114 (277)
T ss_pred EEEeCCC-------------CCc--c--ccCCHHHHHHHHHHHHcCCc
Confidence 8887421 243 2 25668889999999885444
No 269
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=48.09 E-value=80 Score=34.10 Aligned_cols=42 Identities=14% Similarity=0.366 Sum_probs=35.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
++-.|+|+..++.|=..-...||..|.+.|++|.+++.+.++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 445677777778899999999999999999999999887654
No 270
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=47.43 E-value=66 Score=27.81 Aligned_cols=54 Identities=15% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~~ 177 (568)
||++.+.++-.|..-..-++.-|+..|++|...... .+.+.+.+.+-.++-+..
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 688999999999999999999999999999999753 344555556666666543
No 271
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=46.72 E-value=25 Score=33.03 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=24.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
|||.|+ ++.|++- -.|.++..+|||+||-++...
T Consensus 1 mKIaiI--gAsG~~G--s~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAII--GASGKAG--SRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEE--ecCchhH--HHHHHHHHhCCCeeEEEEeCh
Confidence 677764 3444443 257889999999999998654
No 272
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=46.68 E-value=33 Score=35.11 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=31.9
Q ss_pred eEEEEEec-CCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIV-GTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~-gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
||++|+.. |+-|--.-..++|-.++++|++|.+++.+...
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 67777765 67789999999999999999999999876544
No 273
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=46.50 E-value=2.6e+02 Score=27.25 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=60.4
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCC-chhhHhcC-----CceeeccCCChHHHHHHHhhcCCCCCCCCCChhHHHH
Q 008369 132 TRGDVQPFVAIGKRLQEDGHRVRLATHAN-FKDFVLGA-----GLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPIQRN 205 (568)
Q Consensus 132 s~GHv~P~laLA~~L~~rGH~V~~~t~~~-~~~~v~~~-----Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 205 (568)
+..|+...+.+...++.+|-.+.|+++.+ +.+.|+.+ |+....-. -.|++..
T Consensus 90 T~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~gy~~~~~w------------~~G~lTN---------- 147 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAGGYSHNRKW------------LGGLLTN---------- 147 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhcCceeeeee------------ccceeec----------
Confidence 56788899999999999999999997654 55555543 22111100 0111111
Q ss_pred HHHHHHHHHhh--hcCCCCCCCCCCCCCcEEEe-CCCc-ccHHHHHHHcCCCEEEEeccCCCC
Q 008369 206 QLKEIIYSLLP--ACKDPDPDTMVPFKPDAIIA-NPPA-YGHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 206 ~~~~~~~~~~~--~~~~~~~~~~~~~~pDlVI~-d~~~-~~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
...+.....+ .+.....-.+....+|+||. |+.. ..++.=|.+++||.|.+.-..+.|
T Consensus 148 -~~~l~g~~~~~~~~~pd~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~P 209 (251)
T KOG0832|consen 148 -ARELFGALVRKFLSLPDALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCNP 209 (251)
T ss_pred -chhhcccccccccCCCcceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecCCCCc
Confidence 0111111100 01111111233446799876 6543 356777999999999876555443
No 274
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.17 E-value=31 Score=30.70 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=42.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
.+|++.+.++-+|-.----++..|.+.|++|..+... .+.+.+.+.+..++-+.
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS 59 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIETKADAILVS 59 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 5899999999999999999999999999999999653 34455555666666554
No 275
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=45.85 E-value=2.2e+02 Score=28.56 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=25.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
..||.|+-.|..| .++|..|+++||+|+++...
T Consensus 3 ~~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 3 IKNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ccEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 3578887666656 45788899999999999643
No 276
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=45.85 E-value=1.2e+02 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=25.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+||||++..|++.| +|++.|++.|++|..+-.
T Consensus 2 ~~kVLvlG~G~re~-----al~~~l~~~g~~v~~~~~ 33 (435)
T PRK06395 2 TMKVMLVGSGGRED-----AIARAIKRSGAILFSVIG 33 (435)
T ss_pred ceEEEEECCcHHHH-----HHHHHHHhCCCeEEEEEC
Confidence 58999987777665 688999998988877743
No 277
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=45.82 E-value=28 Score=35.61 Aligned_cols=50 Identities=30% Similarity=0.480 Sum_probs=41.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~ 177 (568)
|||+|+-.|+-|= -+|-.|++.||+|+++.-+...+.+.+.|+......+
T Consensus 1 mkI~IlGaGAvG~-----l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~ 50 (307)
T COG1893 1 MKILILGAGAIGS-----LLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGG 50 (307)
T ss_pred CeEEEECCcHHHH-----HHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCC
Confidence 7899988887764 4688899999999999988777888888998887764
No 278
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.25 E-value=40 Score=33.86 Aligned_cols=55 Identities=25% Similarity=0.406 Sum_probs=42.3
Q ss_pred cccEEEEeCChhHHHHHHH-hCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 441 RCLAVVHHGGAGTTAAGLK-AACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 441 ~~~~~I~HGG~gT~~EaL~-~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
.+|++|+=||=||++.++. ...|++.+-. -.+|. + .+.+.+++.++|+++++.+|
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~-------------G~lGF--L--~~~~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINM-------------GGLGF--L--TEIEIDEVGSAIKKLIRGEY 107 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEEC-------------CCCcc--C--cccCHHHHHHHHHHHHcCCc
Confidence 6899999999999999988 4678887743 23454 2 36778999999999984443
No 279
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=45.14 E-value=1.2e+02 Score=32.24 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=25.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
|||+|+-.|.. -.+|++++++-|+.++++..+...
T Consensus 1 ~kiliiG~G~~-----~~~l~~~~~~~~~~~~~~~~~~~~ 35 (423)
T TIGR00877 1 MKVLVIGNGGR-----EHALAWKLAQSPLVKYVYVAPGNA 35 (423)
T ss_pred CEEEEECCChH-----HHHHHHHHHhCCCccEEEEECCCH
Confidence 68888877766 457888888888887777655443
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=45.13 E-value=25 Score=34.93 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=39.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
...+++|...++.|=..=..|+|.+|.++|++|+|++.+++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 55788998888888888899999999999999999998776555543
No 281
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.01 E-value=1.8e+02 Score=29.18 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=56.2
Q ss_pred HHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCEEeecCCCC
Q 008369 397 IVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPTTIVPFFGD 472 (568)
Q Consensus 397 i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~vivP~~~D 472 (568)
+.+.+++.+..+.+...... .+ ..+. ..+.+...+...+|++|+=||=||++.++.. ++|++.+-.
T Consensus 5 l~~~l~~~g~~v~~~~~~~~--~~-~~~~----~~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~--- 74 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAE--QL-NLPE----NHLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR--- 74 (272)
T ss_pred HHHHHHHCCCEEEEecchhh--hc-Cccc----cccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC---
Confidence 45667777887766421110 00 0000 1122334444678999999999999988663 689888742
Q ss_pred hhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcC-HHH
Q 008369 473 QPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLD-PKV 512 (568)
Q Consensus 473 Q~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd-~~~ 512 (568)
-.+|. . .+.+++++.+++..+++ .+|
T Consensus 75 ----------G~lGF-L---~~~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 75 ----------GNLGF-L---TDIDPKNAYEQLEACLERGEF 101 (272)
T ss_pred ----------CCCcc-c---ccCCHHHHHHHHHHHHhcCCc
Confidence 12554 2 25677888888888774 444
No 282
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=44.97 E-value=1.4e+02 Score=32.16 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.0
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+||++|.+... ..+|+++|||++.+
T Consensus 373 ~~dliig~s~~---k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 373 GADLLITNSHG---RALAQRLALPLVRA 397 (432)
T ss_pred CCCEEEECcch---HHHHHHcCCCEEEe
Confidence 79999998643 67999999999864
No 283
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=44.66 E-value=27 Score=37.11 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=38.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~ 168 (568)
.+||++...|+.|= .-...+.+.|.+.|++|+++.+++...++...
T Consensus 3 ~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~~ 48 (390)
T TIGR00521 3 NKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITPL 48 (390)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHHH
Confidence 46899988887655 55899999999999999999988888887654
No 284
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=44.65 E-value=1.5e+02 Score=31.84 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~i 175 (568)
+--|+++..++-|=-.-...||..|+++|++|.+++.+.++ ...+..+++|+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~ 161 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGS 161 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEee
Confidence 34456666678899999999999999999999999887765 2233456666654
No 285
>PRK09620 hypothetical protein; Provisional
Probab=44.26 E-value=31 Score=33.73 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=31.8
Q ss_pred hhHHhhhc-CCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEc
Q 008369 366 SLVKWLED-GEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINK 412 (568)
Q Consensus 366 ~l~~~L~~-~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~ 412 (568)
++...+.+ .+..+.|+|--......+++.+...+.|++-+..+|+.-
T Consensus 134 dIl~~l~~~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN 181 (229)
T PRK09620 134 KVLKQIKQWDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIAN 181 (229)
T ss_pred HHHHHHHhhCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 34444443 234688888877655566777877788888888888753
No 286
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=44.09 E-value=1.9e+02 Score=31.39 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=20.3
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.+||++|.+... ..+|+++|||++.+
T Consensus 394 ~~pDl~ig~~~~---~~~a~k~giP~i~~ 419 (456)
T TIGR01283 394 YKADLLIAGGKE---RYTALKLGIPFCDI 419 (456)
T ss_pred cCCCEEEEccch---HHHHHhcCCCEEEc
Confidence 379999987432 56889999999875
No 287
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=44.07 E-value=51 Score=30.16 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=32.8
Q ss_pred EEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccC
Q 008369 127 MLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 127 i~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~ 176 (568)
|+..|+.|++-- .++++|.++||+|+.++....+..- ..+++.+...
T Consensus 1 I~V~GatG~vG~--~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d 47 (183)
T PF13460_consen 1 ILVFGATGFVGR--ALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGD 47 (183)
T ss_dssp EEEETTTSHHHH--HHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESC
T ss_pred eEEECCCChHHH--HHHHHHHHCCCEEEEEecCchhccc-ccccccceee
Confidence 345677777754 4899999999999999865432111 6677776654
No 288
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.99 E-value=3.3e+02 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=25.5
Q ss_pred CCcEEEe-CCCcc-cHHHHHHHcCCCEEEEeccCCCC
Q 008369 230 KPDAIIA-NPPAY-GHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 230 ~pDlVI~-d~~~~-~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
-||+++. ||..- -++.=|.++|||+|.+.-+.+.|
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~dp 192 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCDP 192 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCCC
Confidence 4999865 66543 35666999999999887665544
No 289
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.84 E-value=48 Score=32.96 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHH-hCCCEEee
Q 008369 389 EPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLK-AACPTTIV 467 (568)
Q Consensus 389 ~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~-~GvP~viv 467 (568)
+..+..+.+.+.+.+.+..+.+... . . + --..+|++|+=||=||++.++. .++|++.+
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~--~-----~-----------~---~~~~~d~vi~iGGDGT~L~a~~~~~~Pilgi 68 (256)
T PRK14075 10 EKEKEAKFLKEKISKEHEVVEFCEA--S-----A-----------S---GKVTADLIIVVGGDGTVLKAAKKVGTPLVGF 68 (256)
T ss_pred cHHHHHHHHHHHHHHcCCeeEeecc--c-----c-----------c---ccCCCCEEEEECCcHHHHHHHHHcCCCEEEE
Confidence 4455666666677766665443211 0 0 0 0146799999999999999987 68888877
Q ss_pred cCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 468 PFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 468 P~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
-.. .+|. . .+.+.+++.++++.+++.+|
T Consensus 69 n~G-------------~lGf-l---~~~~~~~~~~~l~~~~~g~~ 96 (256)
T PRK14075 69 KAG-------------RLGF-L---SSYTLEEIDRFLEDLKNWNF 96 (256)
T ss_pred eCC-------------CCcc-c---cccCHHHHHHHHHHHHcCCc
Confidence 521 1554 2 25678889999998875443
No 290
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.06 E-value=85 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.279 Sum_probs=24.5
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
+.||+|+-.|..| .++|+.|.++|++|++.-
T Consensus 15 ~~~v~v~G~G~sG-----~a~a~~L~~~G~~V~~~D 45 (473)
T PRK00141 15 SGRVLVAGAGVSG-----RGIAAMLSELGCDVVVAD 45 (473)
T ss_pred CCeEEEEccCHHH-----HHHHHHHHHCCCEEEEEC
Confidence 3578887777655 399999999999888864
No 291
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=42.41 E-value=58 Score=31.14 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe---CCCchhhHhcCCceeecc
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT---HANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t---~~~~~~~v~~~Gl~f~~i 175 (568)
-++||.+-..++-|-...|+.=|++|+++|-+|.+.. |..-...-.-.|++.+|-
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vethgR~et~~l~~gLe~iP~ 61 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVETHGRPETEALLEGLEVIPR 61 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---TT-HHHHHHHCTS-B---
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHcCCCcCCC
Confidence 3589999999999999999999999999999999874 433232333456766554
No 292
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=42.41 E-value=1e+02 Score=32.74 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=22.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
||||++-.|++-| +||+.|++.+---.++
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~ 29 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVY 29 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEE
Confidence 8999999999988 6899998866443333
No 293
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=42.40 E-value=71 Score=34.11 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=22.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC-CCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED-GHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r-GH~V~~~t~ 158 (568)
|||+|+..|++.| +|+++|.+. |+.+.++.+
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~~ 32 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVAP 32 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEeC
Confidence 7999988887666 699999876 544444444
No 294
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=41.34 E-value=77 Score=33.89 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=28.7
Q ss_pred EEEEEecC-CCCChHHHHHHHHHHHhCCCeEEEE-eCCCc
Q 008369 124 HIVMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLA-THANF 161 (568)
Q Consensus 124 ~Ili~~~g-s~GHv~P~laLA~~L~~rGH~V~~~-t~~~~ 161 (568)
+|+|.... +.|-..-.+.|.++|+++|++|.-+ +.+++
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 45665433 5688899999999999999999876 44443
No 295
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.84 E-value=72 Score=32.49 Aligned_cols=49 Identities=18% Similarity=0.301 Sum_probs=30.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-chhhHhcCCceeecc
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN-FKDFVLGAGLEFFPL 175 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~-~~~~v~~~Gl~f~~i 175 (568)
|||++ .|+.|.+-. .|+++|.++||+|+.++... -.......|++++..
T Consensus 1 MkIlV--tGatG~iG~--~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~ 50 (317)
T CHL00194 1 MSLLV--IGATGTLGR--QIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYG 50 (317)
T ss_pred CEEEE--ECCCcHHHH--HHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEEC
Confidence 56665 466665543 47788999999999997532 122333456666554
No 296
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=40.82 E-value=3.3e+02 Score=28.44 Aligned_cols=98 Identities=14% Similarity=0.062 Sum_probs=55.0
Q ss_pred CCCceEEEcCCCChhhh---hccccEEEE-----eCChhHHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCC
Q 008369 422 ESKDFVYLLDNCPHDWL---FSRCLAVVH-----HGGAGTTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVE 493 (568)
Q Consensus 422 ~~~~nv~~~~~vP~~~l---l~~~~~~I~-----HGG~gT~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~ 493 (568)
.++.+|.+.-++|.+.+ |..|..-|| |=|. ++.|.+++|.=.|+=--.|--.+...--+-.-.|. -
T Consensus 334 ~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEHFGI-sVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGF-----l 407 (465)
T KOG1387|consen 334 KIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEHFGI-SVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGF-----L 407 (465)
T ss_pred CCccceEEEecCCHHHHHHHhccceeehhhhhhhhcch-hHHHHHhcCceEEEeCCCCCceeeeeccCCcccee-----e
Confidence 36788999999999887 466666554 3343 78899999975554211110000000000001222 1
Q ss_pred CCCHHHHHHHHHHhc--CHH----HHHHHHHHHHHhhc
Q 008369 494 EFSLDKLVDAIRFML--DPK----VKEHAVELAKAMEN 525 (568)
Q Consensus 494 ~lt~e~L~~aI~~lL--d~~----~r~~a~~la~~~~~ 525 (568)
..|.++-+++|-+++ |++ +|++|+.-..++.+
T Consensus 408 a~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE 445 (465)
T KOG1387|consen 408 APTDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGE 445 (465)
T ss_pred cCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhH
Confidence 357788999998877 554 44444444444433
No 297
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=40.36 E-value=1.9e+02 Score=30.38 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=26.0
Q ss_pred CCeEEEEEe-cCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 121 PPLHIVMLI-VGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 121 ~~m~Ili~~-~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
.+++|+|+- .|..|. .+|+.|.++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 447888875 565553 5788999999999999753
No 298
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=40.14 E-value=1.4e+02 Score=28.09 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=21.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQED 149 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~r 149 (568)
++++ ++..|++||..=|+.|-+.|.++
T Consensus 38 s~~~-lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 38 SLST-LVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred cceE-EEEEcCCCcHHHHHHHHHHHHhh
Confidence 3454 45678999999999999999775
No 299
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=39.94 E-value=3e+02 Score=25.22 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.0
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEE---eCC---CchhhHhcC-CceeeccCC
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA---THA---NFKDFVLGA-GLEFFPLGG 177 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~---t~~---~~~~~v~~~-Gl~f~~i~~ 177 (568)
|.+.+..+.|-....+++|-+.+.+|++|.++ -.. .-...++.. +++++..+.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~ 64 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGR 64 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCC
Confidence 45566678888888888888888899999995 221 112233332 677777654
No 300
>PLN02929 NADH kinase
Probab=39.78 E-value=41 Score=34.27 Aligned_cols=96 Identities=14% Similarity=-0.003 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHH---hCCCEEee
Q 008369 391 EKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLK---AACPTTIV 467 (568)
Q Consensus 391 ~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~---~GvP~viv 467 (568)
+...+.+.+.|++.+..+..... .++ ......+|++|+-||=||++-+.. .++|++.+
T Consensus 33 ~~~~~~~~~~L~~~gi~~~~v~r-~~~------------------~~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGI 93 (301)
T PLN02929 33 KDTVNFCKDILQQKSVDWECVLR-NEL------------------SQPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGV 93 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEEeec-ccc------------------ccccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEE
Confidence 44566667788888877633221 110 112256799999999999999865 47899998
Q ss_pred cCCC------ChhHHHHHH-HHcCCCCCCCCCCCCCHHHHHHHHHHhcCHH
Q 008369 468 PFFG------DQPFWGERV-HARGLGPAPIPVEEFSLDKLVDAIRFMLDPK 511 (568)
Q Consensus 468 P~~~------DQ~~na~~v-~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~ 511 (568)
-.-. .++.|. . +..-.|. . -..+.+++.++|+.+++.+
T Consensus 94 N~Gp~~~~~~~~~~~~--~~~~r~lGf-L---~~~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 94 NSDPTQKDEVEEYSDE--FDARRSTGH-L---CAATAEDFEQVLDDVLFGR 138 (301)
T ss_pred ECCCcccccccccccc--cccccCccc-c---ccCCHHHHHHHHHHHHcCC
Confidence 5531 122222 2 2234775 2 2567899999999998443
No 301
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=39.30 E-value=2.5e+02 Score=30.66 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=20.2
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHI 256 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~ 256 (568)
.+||++|.+. ....+|+++|||++-
T Consensus 392 ~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEecC---chhhhhhhcCCCEEE
Confidence 3799999983 335799999999984
No 302
>PRK06849 hypothetical protein; Provisional
Probab=39.13 E-value=48 Score=35.02 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=28.1
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
.+|+|||...+ ..-.+.+++.|.+.||+|.++....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46888887433 2368999999999999999997653
No 303
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=38.94 E-value=2e+02 Score=30.86 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=22.2
Q ss_pred CCCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 228 PFKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 228 ~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+.+||++|.++. ...+|+++|||++.+.
T Consensus 353 ~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 353 EFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred hCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 348999999854 3458999999998754
No 304
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=38.81 E-value=1.9e+02 Score=29.31 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCCCCeEEEEEecCCCCChHHHHHHHHHHHh--CCCeEEEEeC--CCchhhHhcCCceeeccCC
Q 008369 118 HGIPPLHIVMLIVGTRGDVQPFVAIGKRLQE--DGHRVRLATH--ANFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 118 ~~~~~m~Ili~~~gs~GHv~P~laLA~~L~~--rGH~V~~~t~--~~~~~~v~~~Gl~f~~i~~ 177 (568)
...+++||+++..|....++ +|.++..+ -+++|.++.+ +......++.|++++.++.
T Consensus 85 ~~~~~~ri~vl~Sg~gsnl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~gIp~~~~~~ 145 (286)
T PRK06027 85 DSAERKRVVILVSKEDHCLG---DLLWRWRSGELPVEIAAVISNHDDLRSLVERFGIPFHHVPV 145 (286)
T ss_pred ccccCcEEEEEEcCCCCCHH---HHHHHHHcCCCCcEEEEEEEcChhHHHHHHHhCCCEEEecc
Confidence 34577999999998854444 44444444 2688877743 3466778888999887753
No 305
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=38.79 E-value=45 Score=29.95 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
..+.||++.+.|.-||=...--+++.|++.|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 467899999999999999999999999999999988754
No 306
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=38.62 E-value=47 Score=31.90 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=25.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
||+|+|.-.|-.| -+||..|.+.||+|.+.+...
T Consensus 1 m~~~~i~GtGniG-----~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 1 MMIIAIIGTGNIG-----SALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred CcEEEEeccChHH-----HHHHHHHHhCCCeEEEecCCC
Confidence 5677766554333 578999999999999997654
No 307
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.59 E-value=1.3e+02 Score=32.50 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
.||+|+-.|..| .++|+.|.++|++|+..
T Consensus 10 ~~i~viG~G~~G-----~~~a~~l~~~G~~v~~~ 38 (460)
T PRK01390 10 KTVAVFGLGGSG-----LATARALVAGGAEVIAW 38 (460)
T ss_pred CEEEEEeecHhH-----HHHHHHHHHCCCEEEEE
Confidence 478888777666 23599999999998775
No 308
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.46 E-value=1e+02 Score=31.74 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=37.6
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--chhhHhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN--FKDFVLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~--~~~~v~~~Gl~f~~i~ 176 (568)
|.++|.|.-.|+.||+-- .+|+++ |++|+.+.+.+ -++.++..|.+.+-..
T Consensus 181 pG~~vgI~GlGGLGh~aV--q~AKAM---G~rV~vis~~~~kkeea~~~LGAd~fv~~ 233 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAV--QYAKAM---GMRVTVISTSSKKKEEAIKSLGADVFVDS 233 (360)
T ss_pred CCcEEEEecCcccchHHH--HHHHHh---CcEEEEEeCCchhHHHHHHhcCcceeEEe
Confidence 668999998888999753 444443 99999998764 5567777887755543
No 309
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.09 E-value=27 Score=38.01 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=38.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~ 168 (568)
...||++...|+-+ ..-...|.+.|+++||+|+++.++....|+...
T Consensus 69 ~~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p~ 115 (475)
T PRK13982 69 ASKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTPL 115 (475)
T ss_pred CCCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhHH
Confidence 45789888877543 347889999999999999999998888888754
No 310
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=37.76 E-value=48 Score=31.53 Aligned_cols=55 Identities=15% Similarity=0.044 Sum_probs=43.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
.-||++.+.++-.|-....-++..|+..|++|+.+... ++.+.+.+.+..++-+.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 46899999999999999999999999999999988643 34455555666655554
No 311
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=37.62 E-value=53 Score=33.49 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=34.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC---chhhHhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN---FKDFVLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~---~~~~v~~~Gl~f~~i~ 176 (568)
..|||.|+-.|..| .++|+.|.+.||+|+++.... ..+.++...+-++.++
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~~~~~~~~~~~~advvi~~vp 56 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRRSGLSLAAVLADADVIVSAVS 56 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCCCCCCHHHHHhcCCEEEEECC
Confidence 45899998777655 478999999999999996543 2333444444444444
No 312
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=37.60 E-value=2.6e+02 Score=31.29 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhh---ccccEEEE
Q 008369 371 LEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLF---SRCLAVVH 447 (568)
Q Consensus 371 L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll---~~~~~~I~ 447 (568)
+.+++.++.++||++.. ....+++.|.+.|..+-++ |.+++.-++.+-+. .+-+.+||
T Consensus 498 ~~~G~~vail~~G~~~~-----~al~vae~L~~~Gi~~TVv--------------d~rfvkPlD~~ll~~La~~h~~~vt 558 (627)
T COG1154 498 LKEGEKVAILAFGTMLP-----EALKVAEKLNAYGISVTVV--------------DPRFVKPLDEALLLELAKSHDLVVT 558 (627)
T ss_pred EecCCcEEEEecchhhH-----HHHHHHHHHHhcCCCcEEE--------------cCeecCCCCHHHHHHHHhhcCeEEE
Q ss_pred ------eCChhH-HHHHHH-hC--CCEEeecCC---CChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 448 ------HGGAGT-TAAGLK-AA--CPTTIVPFF---GDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 448 ------HGG~gT-~~EaL~-~G--vP~vivP~~---~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
+||.|| ++|.|. +| +|++-+-+. .||-.-.....+.|+-. +.+++.|...+
T Consensus 559 lEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~gLd~----------~~i~~~i~~~l 622 (627)
T COG1154 559 LEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAELGLDA----------EGIARRILEWL 622 (627)
T ss_pred EecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHcCCCH----------HHHHHHHHHHH
No 313
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=37.41 E-value=32 Score=34.42 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 141 AIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 141 aLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
.+|..|++.||+|++++.....+.++..|+.+...
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~ 39 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSL 39 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEec
Confidence 47889999999999998765556677788876544
No 314
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=37.32 E-value=2.4e+02 Score=31.16 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
.+||+||.+.. ..++|+++|||++.+.
T Consensus 361 ~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 361 AAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred cCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 37999998863 3679999999997654
No 315
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=37.16 E-value=1.9e+02 Score=30.92 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=20.7
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+||+||.+... .++|+++|||++.+
T Consensus 358 ~pdliig~s~~---~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRV---GELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCcc---chhhhhcCCCEEec
Confidence 69999998654 36999999999875
No 316
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=36.71 E-value=42 Score=30.88 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=36.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--chhhHhcCCceeeccC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN--FKDFVLGAGLEFFPLG 176 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~--~~~~v~~~Gl~f~~i~ 176 (568)
..+|.++-+|++||. -|.-|++.|++|++.-.+. ..+..++.|++..++.
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 367999999999885 5788999999999986554 4567788999877653
No 317
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=36.58 E-value=42 Score=34.54 Aligned_cols=33 Identities=33% Similarity=0.528 Sum_probs=29.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
+|||.++-.|+.| .+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 5788888888877 68999999999999999865
No 318
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=36.35 E-value=1.4e+02 Score=32.06 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=39.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHH-hCCCeEEEEeCCCchhh--------HhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQ-EDGHRVRLATHANFKDF--------VLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~-~rGH~V~~~t~~~~~~~--------v~~~Gl~f~~i 175 (568)
+--|+++..++.|=-.-...||..|. ++|++|.+++.+.++.. .+..|++++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~ 161 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFAL 161 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEec
Confidence 34455556668899999999999997 68999999988876542 23456665554
No 319
>PRK05693 short chain dehydrogenase; Provisional
Probab=36.34 E-value=1.5e+02 Score=29.06 Aligned_cols=33 Identities=12% Similarity=0.264 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
||.++++.++ |-+- .++++.|.++|++|++++.
T Consensus 1 mk~vlItGas-ggiG--~~la~~l~~~G~~V~~~~r 33 (274)
T PRK05693 1 MPVVLITGCS-SGIG--RALADAFKAAGYEVWATAR 33 (274)
T ss_pred CCEEEEecCC-ChHH--HHHHHHHHHCCCEEEEEeC
Confidence 4555555443 3333 4778889999999988764
No 320
>PRK04148 hypothetical protein; Provisional
Probab=36.10 E-value=78 Score=28.13 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe-CCCchhhHhcCCceeecc
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT-HANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t-~~~~~~~v~~~Gl~f~~i 175 (568)
+.++|+.+..|+. ..+|..|++.||+|+.+= .+...+..+..++.++.-
T Consensus 16 ~~~kileIG~GfG------~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~d 65 (134)
T PRK04148 16 KNKKIVELGIGFY------FKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVD 65 (134)
T ss_pred cCCEEEEEEecCC------HHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEEC
Confidence 3478988888743 346888889999999883 444445555556555443
No 321
>PRK12743 oxidoreductase; Provisional
Probab=35.95 E-value=2e+02 Score=27.93 Aligned_cols=33 Identities=12% Similarity=0.262 Sum_probs=23.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+|.++++.++. .+- .++++.|.++||+|.++..
T Consensus 2 ~k~vlItGas~-giG--~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDS-GIG--KACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCCc-hHH--HHHHHHHHHCCCEEEEEeC
Confidence 45555555543 333 6789999999999988754
No 322
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=35.92 E-value=3.4e+02 Score=28.84 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=20.8
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.+||++|.+... ..+|+++|||++..
T Consensus 355 ~~pDl~ig~s~~---~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGKE---RYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCcc---hhhHHhcCCCEEEc
Confidence 379999999544 46899999999854
No 323
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.68 E-value=63 Score=36.23 Aligned_cols=98 Identities=18% Similarity=0.175 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCC-CCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCE
Q 008369 390 PEKMTEIIVKALEITGHRGIINKGWGGLGNLAE-SKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPT 464 (568)
Q Consensus 390 ~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~-~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~ 464 (568)
..++...+.+.|++.+..+.+-..... .+.. .+.. +-.... +..+|++|+-||=||++.+... ++|+
T Consensus 304 ~~~~~~~i~~~l~~~~~~v~~~~~~~~--~~~~~~~~~-----~~~~~~-~~~~dlvi~lGGDGT~L~aa~~~~~~~~Pi 375 (569)
T PRK14076 304 AINLALKIIKYLDSKGIPYELESFLYN--KLKNRLNEE-----CNLIDD-IEEISHIISIGGDGTVLRASKLVNGEEIPI 375 (569)
T ss_pred HHHHHHHHHHHHHHCCCEEEEechhhh--hhccccccc-----cccccc-ccCCCEEEEECCcHHHHHHHHHhcCCCCCE
Confidence 344566667777777877665321110 0100 0000 000011 2368999999999999999874 7899
Q ss_pred EeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 465 TIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 465 vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
+.+-.. .+|. ..+.+.+++.++|+.+++.+|
T Consensus 376 lGin~G-------------~lGF----L~~~~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 376 ICINMG-------------TVGF----LTEFSKEEIFKAIDSIISGEY 406 (569)
T ss_pred EEEcCC-------------CCCc----CcccCHHHHHHHHHHHHcCCc
Confidence 987531 2454 135678999999999985444
No 324
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=35.00 E-value=49 Score=33.63 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=40.4
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc--hhhHhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF--KDFVLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~--~~~v~~~Gl~f~~i~ 176 (568)
+..+|+|+-+|++||.+ |.-|++.|.+|++...+.- .+..++.|++.+.+.
T Consensus 17 kgK~iaIIGYGsQG~ah-----alNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ 69 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQ-----ALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVE 69 (338)
T ss_pred cCCeEEEEecChHHHHH-----HhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHH
Confidence 34599999999999976 5678999999999875543 356677899987764
No 325
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.97 E-value=1.5e+02 Score=30.37 Aligned_cols=68 Identities=18% Similarity=0.067 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhHHHHHHHh----CCCEEe
Q 008369 391 EKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGTTAAGLKA----ACPTTI 466 (568)
Q Consensus 391 ~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT~~EaL~~----GvP~vi 466 (568)
.+..+.+.+.|++.+..+.+...... .. .. . .+ . ...-..+|++|.-||=||+.+++.. ++|++.
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~--~~-~~--~----~~-~-~~~~~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~g 86 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPK--DN-PY--P----VF-L-ASASELIDLAIVLGGDGTVLAAARHLAPHDIPILS 86 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchh--hc-cc--c----ch-h-hccccCcCEEEEECCcHHHHHHHHHhccCCCCEEE
Confidence 34566667778888888766432111 00 00 0 01 1 2222568999999999999999874 789998
Q ss_pred ecC
Q 008369 467 VPF 469 (568)
Q Consensus 467 vP~ 469 (568)
+..
T Consensus 87 in~ 89 (305)
T PRK02645 87 VNV 89 (305)
T ss_pred Eec
Confidence 864
No 326
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=34.67 E-value=61 Score=33.20 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=30.8
Q ss_pred eEEEEEecC--C-CCChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 008369 123 LHIVMLIVG--T-RGDVQPFVAIGKRLQEDGHRVRLATHANF 161 (568)
Q Consensus 123 m~Ili~~~g--s-~GHv~P~laLA~~L~~rGH~V~~~t~~~~ 161 (568)
|||+|+.-+ + .-+..-..+|.++.++|||+|.++.+...
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 688887654 2 23556788999999999999999998764
No 327
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=34.30 E-value=58 Score=33.01 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=32.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|||++.-=|+-|=-.-.+.||.+|+++|++|.++=-
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~ 36 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGC 36 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEec
Confidence 788888878888999999999999999999999843
No 328
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=34.07 E-value=67 Score=28.23 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=25.3
Q ss_pred eEEEEEecC-CCC--ChHHHHHHHHHHHhCCCeE-EEEeCC
Q 008369 123 LHIVMLIVG-TRG--DVQPFVAIGKRLQEDGHRV-RLATHA 159 (568)
Q Consensus 123 m~Ili~~~g-s~G--Hv~P~laLA~~L~~rGH~V-~~~t~~ 159 (568)
|||+|+... -+| ...-.+.+|+.+.+.||+| +++--.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 677776543 233 3456788999999999994 665443
No 329
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=33.92 E-value=3.2e+02 Score=27.25 Aligned_cols=35 Identities=23% Similarity=0.300 Sum_probs=27.5
Q ss_pred CeEEEEEecC--CCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 122 PLHIVMLIVG--TRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 122 ~m~Ili~~~g--s~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
..|++.++.+ +-|=-.-...||.+|++.|.+|-++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlli 92 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLL 92 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 4666666554 4566677889999999999999999
No 330
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.55 E-value=3.3e+02 Score=26.67 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=54.7
Q ss_pred hhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEE
Q 008369 366 SLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAV 445 (568)
Q Consensus 366 ~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~ 445 (568)
.+.+|+..+++++||-.-|.. .+.+...+.+.++++.+|..+...... ++ ..+.+..+|++
T Consensus 23 ~~~~~~~~~~~v~fIPtAs~~-~~~~~y~~~~~~af~~lG~~v~~l~~~----------~d--------~~~~l~~ad~I 83 (233)
T PRK05282 23 LIAELLAGRRKAVFIPYAGVT-QSWDDYTAKVAEALAPLGIEVTGIHRV----------AD--------PVAAIENAEAI 83 (233)
T ss_pred HHHHHHcCCCeEEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEeccc----------hh--------hHHHHhcCCEE
Confidence 345566555669999887765 455666777799999999885543211 00 12446788888
Q ss_pred EEeCChh--------------HHHHHHHhCCCEEee
Q 008369 446 VHHGGAG--------------TTAAGLKAACPTTIV 467 (568)
Q Consensus 446 I~HGG~g--------------T~~EaL~~GvP~viv 467 (568)
+--||-. .+.+++..|+|.+..
T Consensus 84 ~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~ 119 (233)
T PRK05282 84 FVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGW 119 (233)
T ss_pred EECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEE
Confidence 8777732 244677789888765
No 331
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=33.24 E-value=3.5e+02 Score=24.07 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=41.0
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE-eC-CCchhhHhcCCceeeccCCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA-TH-ANFKDFVLGAGLEFFPLGGD 178 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~-t~-~~~~~~v~~~Gl~f~~i~~~ 178 (568)
..||+||.--|+-.-++-++ ++|.++|.+-.+- +. .....-++..|+.....+.+
T Consensus 15 ~~MrFLIThnPtnaTln~fi---eELkKygvttvVRVCe~TYdt~~lek~GI~Vldw~f~ 71 (173)
T KOG2836|consen 15 KNMRFLITHNPTNATLNKFI---EELKKYGVTTVVRVCEPTYDTTPLEKEGITVLDWPFD 71 (173)
T ss_pred cceEEEEecCCCchhHHHHH---HHHHhcCCeEEEEecccccCCchhhhcCceEeecccc
Confidence 56999999888887777664 7999999764433 22 33456788999999988764
No 332
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=33.13 E-value=38 Score=36.85 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=25.0
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|||+|+-.|-.| ++-|.+|+++||+||++-.
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea 31 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADAGYDVTLYEA 31 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhCCCceEEEec
Confidence 678887666443 7889999999999999943
No 333
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=32.93 E-value=32 Score=30.69 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccC
Q 008369 140 VAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 140 laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~ 176 (568)
.-+|..|++.||+|++++.....+.+++.|+.+....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~ 47 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPD 47 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETT
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecc
Confidence 3478899999999999998774556777888776654
No 334
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=32.91 E-value=3.4e+02 Score=29.27 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.0
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+||++|.+... ..+|+++|||++.+
T Consensus 387 ~pdllig~s~~---~~~A~~lgip~~~~ 411 (443)
T TIGR01862 387 KPDIIFSGIKE---KFVAQKLGVPYRQM 411 (443)
T ss_pred CCCEEEEcCcc---hhhhhhcCCCeEec
Confidence 79999998643 57999999999864
No 335
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=32.76 E-value=1.4e+02 Score=31.08 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=20.9
Q ss_pred CCcEEEe--CCC-cccHHHHHHHcCCCEEEEec
Q 008369 230 KPDAIIA--NPP-AYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 230 ~pDlVI~--d~~-~~~~~~~A~~lgIP~v~~~t 259 (568)
+||+||+ |.. ++++..+|..++||++-+..
T Consensus 67 ~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 67 KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-
T ss_pred CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecC
Confidence 7999987 543 45778999999999876543
No 336
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=32.54 E-value=41 Score=30.68 Aligned_cols=45 Identities=22% Similarity=0.339 Sum_probs=29.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC-CchhhHhcCCce
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA-NFKDFVLGAGLE 171 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~-~~~~~v~~~Gl~ 171 (568)
||||.|+-.|..| .++|+.|.+.||+|+++-.. .-.+.+...|..
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~ 46 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDRSPEKAEALAEAGAE 46 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEE
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeeccchhhhhhhHHhhhh
Confidence 6889998887665 47899999999999988532 222334444543
No 337
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=32.45 E-value=5.1e+02 Score=28.00 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=25.9
Q ss_pred EEEEecC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 125 IVMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 125 Ili~~~g-s~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+|.... .-|=-.-..+|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 356778899999999999999998843
No 338
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=32.41 E-value=2e+02 Score=29.99 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=24.4
Q ss_pred ccccEEEEeCChhH---HHHHHHhCCCEEee
Q 008369 440 SRCLAVVHHGGAGT---TAAGLKAACPTTIV 467 (568)
Q Consensus 440 ~~~~~~I~HGG~gT---~~EaL~~GvP~viv 467 (568)
-+-|++|++||+-| ...|...|+|+++.
T Consensus 90 ~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 90 LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred cCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 35789999999986 89999999999884
No 339
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=32.34 E-value=3.5e+02 Score=29.12 Aligned_cols=27 Identities=22% Similarity=0.168 Sum_probs=21.8
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
.+||++|.+.. ...+|+++|||++.+.
T Consensus 376 ~~pDliiG~s~---~~~~a~~~gip~v~~~ 402 (435)
T cd01974 376 EPVDLLIGNTY---GKYIARDTDIPLVRFG 402 (435)
T ss_pred cCCCEEEECcc---HHHHHHHhCCCEEEee
Confidence 37999999864 3679999999997653
No 340
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=31.99 E-value=3.7e+02 Score=32.18 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.1
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+||++|++... ..+|+++|||++-..
T Consensus 389 ~pDLlig~~~~---~~~a~k~giP~~~~~ 414 (917)
T PRK14477 389 MPDLIVAGGKT---KFLALKTRTPFLDIN 414 (917)
T ss_pred CCCEEEecCch---hhHHHHcCCCeEEcc
Confidence 79999997644 468999999998644
No 341
>PRK08303 short chain dehydrogenase; Provisional
Probab=31.86 E-value=2.1e+02 Score=29.05 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=24.9
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++.| --.++|++|.+.|++|.++..
T Consensus 9 k~~lITGgs~G---IG~aia~~la~~G~~Vv~~~r 40 (305)
T PRK08303 9 KVALVAGATRG---AGRGIAVELGAAGATVYVTGR 40 (305)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 57777777665 338899999999999988754
No 342
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=31.81 E-value=2.3e+02 Score=30.30 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=22.0
Q ss_pred CCCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 228 PFKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 228 ~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+.+||+||.+... ..+|+++|+|++.+
T Consensus 369 ~~~pdliig~~~~---~~~a~~~~ip~i~~ 395 (428)
T cd01965 369 EEPVDLLIGNSHG---RYLARDLGIPLVRV 395 (428)
T ss_pred ccCCCEEEECchh---HHHHHhcCCCEEEe
Confidence 4479999999754 57899999999764
No 343
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=31.73 E-value=66 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=22.6
Q ss_pred CCCCCcEEEeCCCccc---HHHHHHHcCCCEEE
Q 008369 227 VPFKPDAIIANPPAYG---HTHVAESLKVPLHI 256 (568)
Q Consensus 227 ~~~~pDlVI~d~~~~~---~~~~A~~lgIP~v~ 256 (568)
+...+|+|+-|-..|. --.+++.+|+|++.
T Consensus 175 ~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 175 AEQGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 4557899999976664 33568889999987
No 344
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=31.60 E-value=4.7e+02 Score=28.68 Aligned_cols=126 Identities=15% Similarity=0.163 Sum_probs=76.0
Q ss_pred cEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCC-CCCC----C-CCCCceEEEcCCCChh---hhhccccEEEE
Q 008369 377 PIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWG-GLGN----L-AESKDFVYLLDNCPHD---WLFSRCLAVVH 447 (568)
Q Consensus 377 ~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~-~~~~----l-~~~~~nv~~~~~vP~~---~ll~~~~~~I~ 447 (568)
+++..-|.++.+..-.+...++.-+-+.+.++++...+. ..+. + ...+.++.+.-+.... .++..+|+++-
T Consensus 295 pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~agaD~~lm 374 (487)
T COG0297 295 PLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAGADVILM 374 (487)
T ss_pred cEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhcCCEEEe
Confidence 666666666655443344434554545567766543221 1111 1 1346677777665533 23588999886
Q ss_pred e-----CChhHHHHHHHhCCCEEeecCCC------ChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 448 H-----GGAGTTAAGLKAACPTTIVPFFG------DQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 448 H-----GG~gT~~EaL~~GvP~vivP~~~------DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
- ||. |=++||++|.+-|+.+..| |-..|. ....|.|. .. ...+++.|+.+|++.+
T Consensus 375 PSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~--~~~~gtGf-~f--~~~~~~~l~~al~rA~ 440 (487)
T COG0297 375 PSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWL--IQGVGTGF-LF--LQTNPDHLANALRRAL 440 (487)
T ss_pred CCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchh--ccCceeEE-EE--ecCCHHHHHHHHHHHH
Confidence 4 564 7889999999888887653 222222 45566676 33 3449999999998765
No 345
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=31.42 E-value=2.2e+02 Score=30.35 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
||+|+-.|..| + ++|+.|+++|++|+..=
T Consensus 1 ~~~~iG~G~~G----~-a~a~~l~~~G~~V~~sD 29 (433)
T TIGR01087 1 KILILGLGKTG----R-AVARFLHKKGAEVTVTD 29 (433)
T ss_pred CEEEEEeCHhH----H-HHHHHHHHCCCEEEEEe
Confidence 35565555433 4 99999999999998763
No 346
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.31 E-value=2.7e+02 Score=29.99 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=27.7
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCc---h---hhHhcCCceee
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANF---K---DFVLGAGLEFF 173 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~---~---~~v~~~Gl~f~ 173 (568)
||+|+-.|..| +..|+.|.++||+|++.=.... . +.+++.|++++
T Consensus 2 ~v~viG~G~sG-----~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~ 52 (459)
T PRK02705 2 IAHVIGLGRSG-----IAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVK 52 (459)
T ss_pred eEEEEccCHHH-----HHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEE
Confidence 56666665544 2358999999999988743222 1 23455566654
No 347
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=31.24 E-value=2.9e+02 Score=29.64 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=21.6
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.+||++|.++.. ..+|+++|||++.+
T Consensus 371 ~~~dliiG~s~~---~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNSYG---RRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECchh---HHHHHHcCCCEEEe
Confidence 379999999753 57999999999865
No 348
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=31.17 E-value=2.8e+02 Score=25.90 Aligned_cols=115 Identities=14% Similarity=0.070 Sum_probs=57.8
Q ss_pred hhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCC--CCCCCCCCCceEEEcCCCC-hhhh-hc
Q 008369 365 DSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWG--GLGNLAESKDFVYLLDNCP-HDWL-FS 440 (568)
Q Consensus 365 ~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~--~~~~l~~~~~nv~~~~~vP-~~~l-l~ 440 (568)
.++-.+|.+. ....|+.|+.. -+...+.++..+.+-+++=..... ..+...+..+..+.+.... -..+ ..
T Consensus 22 ~~lG~~la~~-g~~lV~GGg~~-----GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~~ 95 (178)
T TIGR00730 22 AELGAYLAGQ-GWGLVYGGGRV-----GLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMAE 95 (178)
T ss_pred HHHHHHHHHC-CCEEEECCChH-----hHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHHH
Confidence 3455666543 34455555411 144455777766666654222110 0011111112333444433 2233 37
Q ss_pred cccEEEE-eCChhHHHHHHH---------hCCCEEeec---CCCChhHHHHHHHHcCC
Q 008369 441 RCLAVVH-HGGAGTTAAGLK---------AACPTTIVP---FFGDQPFWGERVHARGL 485 (568)
Q Consensus 441 ~~~~~I~-HGG~gT~~EaL~---------~GvP~vivP---~~~DQ~~na~~v~~~G~ 485 (568)
.+|+||. -||.||+-|.+. +.+|++++- ++.+-..+-+.+.+.|.
T Consensus 96 ~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 96 LADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred hCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 7777665 567899988754 399999974 23222334455555554
No 349
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=31.03 E-value=5.3e+02 Score=25.45 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCCh-hhhhcc------ccEEEEeCChhHHHHHHHhCCC
Q 008369 391 EKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPH-DWLFSR------CLAVVHHGGAGTTAAGLKAACP 463 (568)
Q Consensus 391 ~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~-~~ll~~------~~~~I~HGG~gT~~EaL~~GvP 463 (568)
.++.+.+.+-+++.+++-|++.++.+.... +-.++|+.+..-+. ..-|+. -...|.--+..-+.||+..|+|
T Consensus 93 ~e~s~~v~~w~~~~~v~~ii~~~g~~~~~~-~e~~~v~~va~~~~~~~~l~~~~~~~~~~G~I~G~~g~ll~e~~~r~i~ 171 (244)
T COG1938 93 YEISNAVVEWAEENGVEEVISLGGMPARLR-EEKPSVYGVATSEEKLEKLKDLGAEPLEEGTIVGPSGALLNECLKRGIP 171 (244)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcccc-cCCCceEEEecchhhhhHHhhcCCCccccceeecccHHHHHHHHHcCCC
Confidence 456666677777778887777654332222 12345665554332 111211 1226666667889999999999
Q ss_pred EEee--cCCCChh
Q 008369 464 TTIV--PFFGDQP 474 (568)
Q Consensus 464 ~viv--P~~~DQ~ 474 (568)
-+++ +-++|-+
T Consensus 172 a~~ll~et~~~~P 184 (244)
T COG1938 172 ALVLLAETFGDRP 184 (244)
T ss_pred eEEEeccccCCCC
Confidence 9886 4455544
No 350
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=31.01 E-value=1.2e+02 Score=28.21 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCe
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHR 152 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~ 152 (568)
|||+|+..|+. .-+..+.++|.+.+|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 89999987765 5566778899999998
No 351
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=30.75 E-value=2.9e+02 Score=29.74 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=20.6
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
|+|+-.|..| .++|+.|.++||+|+..=
T Consensus 9 ~~v~G~G~sG-----~s~a~~L~~~G~~v~~~D 36 (448)
T PRK03803 9 HIVVGLGKTG-----LSVVRFLARQGIPFAVMD 36 (448)
T ss_pred EEEEeecHhH-----HHHHHHHHhCCCeEEEEe
Confidence 5565555544 359999999999998763
No 352
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=30.50 E-value=65 Score=32.60 Aligned_cols=47 Identities=19% Similarity=0.364 Sum_probs=33.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--chhhHhcCCceeec
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN--FKDFVLGAGLEFFP 174 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~--~~~~v~~~Gl~f~~ 174 (568)
+||.|+-.|..| .++|+.|.++||+|++..... ..+.+...|.....
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~ 49 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAA 49 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccC
Confidence 467777777665 478999999999999996432 24556666666544
No 353
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.30 E-value=2e+02 Score=29.82 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=22.0
Q ss_pred CCCcEEEeC---CCcccHHHHHHHcCCCEEEEeccC
Q 008369 229 FKPDAIIAN---PPAYGHTHVAESLKVPLHIIFTMP 261 (568)
Q Consensus 229 ~~pDlVI~d---~~~~~~~~~A~~lgIP~v~~~t~p 261 (568)
+++|+||+= ...=.+-.+|..+++|++.+-|++
T Consensus 76 ~~~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTTa 111 (351)
T cd08170 76 NGADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTIA 111 (351)
T ss_pred cCCCEEEEecCchhhHHHHHHHHHcCCCEEEeCCcc
Confidence 478999972 222234556667799998876654
No 354
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=30.25 E-value=71 Score=31.62 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=30.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|.|.+..=|+-|--.-...||..|+++|++|.++=-
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 667777556778889999999999999999999843
No 355
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=30.16 E-value=1.3e+02 Score=27.01 Aligned_cols=51 Identities=22% Similarity=0.231 Sum_probs=38.3
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCchhhHhcC-Cceeecc
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATHANFKDFVLGA-GLEFFPL 175 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~~~~~~~v~~~-Gl~f~~i 175 (568)
++|+|++... ..+=.-++.+++.|++. ||++ ++| +...+++++. |++...+
T Consensus 3 ~~~~v~lsv~--d~dK~~l~~~a~~l~~ll~Gf~l-~AT-~gTa~~L~~~~Gi~v~~v 56 (142)
T PRK05234 3 ARKRIALIAH--DHKKDDLVAWVKAHKDLLEQHEL-YAT-GTTGGLIQEATGLDVTRL 56 (142)
T ss_pred cCcEEEEEEe--ccchHHHHHHHHHHHHHhcCCEE-EEe-ChHHHHHHhccCCeeEEE
Confidence 5688888774 44567789999999999 9995 444 4567788888 9876554
No 356
>PRK07206 hypothetical protein; Provisional
Probab=30.08 E-value=2.2e+02 Score=30.13 Aligned_cols=34 Identities=9% Similarity=0.041 Sum_probs=23.1
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|||-+++..+. ..-..++++++++|++|.+++..
T Consensus 1 ~~k~~liv~~~----~~~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 1 MMKKVVIVDPF----SSGKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CCCeEEEEcCC----chHHHHHHHHHHcCCeEEEEEcC
Confidence 45544444443 22356899999999999988754
No 357
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.97 E-value=91 Score=30.34 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=31.2
Q ss_pred CeEEEEEecC--CCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVG--TRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~g--s~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|-+|.+++.| +-|-..-..+|+.+|+++|+.|.++-.+
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 3467777766 6678899999999999999999999543
No 358
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=29.93 E-value=1.8e+02 Score=27.69 Aligned_cols=35 Identities=14% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCcEEEe-CCCc-ccHHHHHHHcCCCEEEEeccCCCC
Q 008369 230 KPDAIIA-NPPA-YGHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 230 ~pDlVI~-d~~~-~~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
.||+||. ||.. .-++.-|.++|||++.+.-+...+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~dp 144 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDNPL 144 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCCCC
Confidence 5899865 6644 346777999999999887655443
No 359
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=29.55 E-value=54 Score=31.92 Aligned_cols=47 Identities=13% Similarity=0.166 Sum_probs=32.2
Q ss_pred hhHHhhhcC-CCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEc
Q 008369 366 SLVKWLEDG-EKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINK 412 (568)
Q Consensus 366 ~l~~~L~~~-~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~ 412 (568)
++.+.+.+. +..+.|+|.-....+.+++.+...+.+.+-+..+|+.-
T Consensus 139 ~il~~~~~~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN 186 (227)
T TIGR02114 139 KVISLVKEWNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILAN 186 (227)
T ss_pred HHHHHHHhhCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 444445432 34688998876654556787877788888888888764
No 360
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=29.49 E-value=4.4e+02 Score=27.10 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=39.7
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~i 175 (568)
+--|+++..++-|=-.-...||..|+.+|++|.+++.+.++ .+.+..|++++..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~ 175 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ 175 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe
Confidence 34455666668899999999999999999999999876643 2344556666554
No 361
>PLN00016 RNA-binding protein; Provisional
Probab=29.45 E-value=65 Score=33.77 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=26.5
Q ss_pred CCCeEEEEEec--CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 120 IPPLHIVMLIV--GTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 120 ~~~m~Ili~~~--gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
..++||+|+.. |+.|.+- ..|+++|.++||+|+.++...
T Consensus 50 ~~~~~VLVt~~~~GatG~iG--~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIG--FYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEh--HHHHHHHHHCCCEEEEEecCC
Confidence 34577877632 3444443 456789999999999998543
No 362
>PF15603 Imm45: Immunity protein 45
Probab=29.37 E-value=79 Score=25.53 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=40.8
Q ss_pred ccCCceeE-----EEEEEEEeecccccCCCCCccccccchhHHHHHHhhhhhccccCCceEEEEec
Q 008369 26 AFGDSISL-----TMSVVYTISLGTIRSCYNDSQATNTTMLIVVQLKWLNRLATVKDDGTVQFEVP 86 (568)
Q Consensus 26 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (568)
+.|+|+.. ..-|+|-.||+.--.+..+ ..++..++++.++....--.+.++.|+|+
T Consensus 22 ~~GE~l~~~~~~~~~Fvvy~~si~~We~P~e~-----~~it~~e~q~II~aI~~~~~~~~~~v~fE 82 (82)
T PF15603_consen 22 AQGEMLLTGNDNDGDFVVYKDSIKNWEPPHEN-----EPITIAERQKIIEAIEKYFSERGMTVDFE 82 (82)
T ss_pred EeeeEEEeccCCCcCEEEEccccccccCCCCC-----cccCHHHHHHHHHHHHHHHhcCceEEEeC
Confidence 36888888 6678888887654432222 25667888999998888888888888774
No 363
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=28.79 E-value=83 Score=30.26 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=35.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCc
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGL 170 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl 170 (568)
...||++...|+- -..-...|.+.|+ +||+|+++.++...+|+....+
T Consensus 18 ~~k~IllgVtGSI-AAyk~~~lvr~L~-~g~~V~VvmT~~A~~FI~p~~l 65 (209)
T PLN02496 18 RKPRILLAASGSV-AAIKFGNLCHCFS-EWAEVRAVVTKASLHFIDRASL 65 (209)
T ss_pred CCCEEEEEEeCHH-HHHHHHHHHHHhc-CCCeEEEEEChhHhhhcCHHHc
Confidence 4568888887754 3445566889998 4999999998888888865443
No 364
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=28.62 E-value=64 Score=34.31 Aligned_cols=52 Identities=15% Similarity=0.241 Sum_probs=41.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
.+|++.+.|+- -....+.+++.|.++|++|+++-++....++....+++..-
T Consensus 5 k~ill~v~gsi-aayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~~~~~~s~ 56 (392)
T COG0452 5 KRILLGVTGSI-AAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSG 56 (392)
T ss_pred ceEEEEecCch-hhhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcccHHHhhC
Confidence 38888777654 34566999999999999999999888888887766655443
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.49 E-value=3.1e+02 Score=27.55 Aligned_cols=39 Identities=18% Similarity=0.336 Sum_probs=30.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhC-C-CeEEEEeCCCch
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQED-G-HRVRLATHANFK 162 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~r-G-H~V~~~t~~~~~ 162 (568)
.|+|+...+-|=-.-...||..+..+ | ++|.+++.+.++
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 34455445778888899999999876 5 999999987654
No 366
>PRK09739 hypothetical protein; Provisional
Probab=28.45 E-value=1.3e+02 Score=28.46 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCeEEEEEecCCCCC-hH--HHHHHHHHHHhCCCeEEEEe
Q 008369 121 PPLHIVMLIVGTRGD-VQ--PFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 121 ~~m~Ili~~~gs~GH-v~--P~laLA~~L~~rGH~V~~~t 157 (568)
.||||+++....+.+ .+ -.-.++++|.+.||+|+++-
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 479999886543332 22 24455667778899999874
No 367
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.30 E-value=6.1e+02 Score=25.32 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=32.4
Q ss_pred CeEEEEEecCCC-CChH---HHHHHHHHHHhCCCeEEEEeCC-CchhhHhcCCc
Q 008369 122 PLHIVMLIVGTR-GDVQ---PFVAIGKRLQEDGHRVRLATHA-NFKDFVLGAGL 170 (568)
Q Consensus 122 ~m~Ili~~~gs~-GHv~---P~laLA~~L~~rGH~V~~~t~~-~~~~~v~~~Gl 170 (568)
++||+++..|.. =|-. -...+.++|.++||+|.++... ...+.+...++
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~~~~~~~~~~~~~ 57 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDIAAQLKELGF 57 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecCcchHHHhccCCC
Confidence 358888775522 2333 6689999999999999999543 33444444443
No 368
>PLN02727 NAD kinase
Probab=28.27 E-value=2.8e+02 Score=32.77 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=44.1
Q ss_pred hhhccccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhcCHHH
Q 008369 437 WLFSRCLAVVHHGGAGTTAAGLKA----ACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFMLDPKV 512 (568)
Q Consensus 437 ~ll~~~~~~I~HGG~gT~~EaL~~----GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lLd~~~ 512 (568)
++...+|++|+=||=||++.+... ++|++.+-+. .+|. .-+.+.+++.++|..+++.+|
T Consensus 739 el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGF----LTdi~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 739 DLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGF----LTSHYFEDFRQDLRQVIHGNN 801 (986)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Cccc----cccCCHHHHHHHHHHHHcCCc
Confidence 334679999999999999999774 6888887432 3454 235678999999999885444
No 369
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=28.22 E-value=1.6e+02 Score=24.99 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeec
Q 008369 132 TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFP 174 (568)
Q Consensus 132 s~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~ 174 (568)
..|.-..++.+.+.++++|..|..+|........+.....+.-
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~ 104 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYI 104 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEE
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEe
Confidence 6788899999999999999999999987766666666554443
No 370
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=27.91 E-value=83 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=28.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
|+|.+..=|+-|=-.-.+.||..|+++|++|.++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 5677774456677788999999999999999998
No 371
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=27.78 E-value=4.4e+02 Score=28.18 Aligned_cols=26 Identities=23% Similarity=0.530 Sum_probs=21.0
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+||++|.++.. ..+|+.+|+|++.+.
T Consensus 370 ~pdliig~~~~---~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQME---RHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecchh---hHHHHHcCCCEEEEe
Confidence 79999999733 457999999998754
No 372
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.74 E-value=2.2e+02 Score=27.76 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=22.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|.++++.++.| --.+++++|.++|++|.++..
T Consensus 7 k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 45555555442 456788999999999988864
No 373
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=27.67 E-value=3.2e+02 Score=26.15 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=22.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|||.++++.++ |-+- ..+++.|.++|++|.++..
T Consensus 1 m~k~ilItGas-~giG--~~la~~l~~~g~~v~~~~~ 34 (248)
T PRK06947 1 MRKVVLITGAS-RGIG--RATAVLAAARGWSVGINYA 34 (248)
T ss_pred CCcEEEEeCCC-CcHH--HHHHHHHHHCCCEEEEEeC
Confidence 45555555544 3332 5688999999999977643
No 374
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=27.62 E-value=3.2e+02 Score=29.65 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=20.9
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+||++|.+... ..+|+++|||++.+
T Consensus 371 ~~dliig~s~~---~~~a~~~gip~~~~ 395 (455)
T PRK14476 371 GADLLITNSHG---RQAAERLGIPLLRV 395 (455)
T ss_pred CCCEEEECchh---HHHHHHcCCCEEEe
Confidence 58999999754 57999999999864
No 375
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=27.58 E-value=4.8e+02 Score=23.90 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=26.2
Q ss_pred EEEecCCCCChHHH-HHHHHHHHhCCCeEEEEeCCC
Q 008369 126 VMLIVGTRGDVQPF-VAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 126 li~~~gs~GHv~P~-laLA~~L~~rGH~V~~~t~~~ 160 (568)
..+.+...+.+..+ -.+|.+|+++|++|.=+...+
T Consensus 2 aav~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~ 37 (159)
T PF10649_consen 2 AAVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRN 37 (159)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 34555666777765 568999999999998887554
No 376
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=27.54 E-value=1e+02 Score=29.19 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=29.6
Q ss_pred CeEEEEEecCCCCChHHHHH-HHHHHHh-CCCeEEEEeC
Q 008369 122 PLHIVMLIVGTRGDVQPFVA-IGKRLQE-DGHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~la-LA~~L~~-rGH~V~~~t~ 158 (568)
||||+++-....||..-+.. +++.+.+ .|++|.++.-
T Consensus 1 M~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 1 MAKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 57999888877899988765 5666776 8999998864
No 377
>PLN02256 arogenate dehydrogenase
Probab=27.44 E-value=83 Score=32.14 Aligned_cols=49 Identities=20% Similarity=0.380 Sum_probs=32.1
Q ss_pred cCCCCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCc
Q 008369 117 VHGIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGL 170 (568)
Q Consensus 117 ~~~~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl 170 (568)
.....+|+|+|+-.|..|- .+|+.|.+.|++|+.+............|+
T Consensus 31 ~~~~~~~kI~IIG~G~mG~-----slA~~L~~~G~~V~~~d~~~~~~~a~~~gv 79 (304)
T PLN02256 31 LEKSRKLKIGIVGFGNFGQ-----FLAKTFVKQGHTVLATSRSDYSDIAAELGV 79 (304)
T ss_pred hccCCCCEEEEEeeCHHHH-----HHHHHHHhCCCEEEEEECccHHHHHHHcCC
Confidence 3455779999987654442 578888889999998876543333333444
No 378
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.34 E-value=1.8e+02 Score=32.22 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=22.2
Q ss_pred CCCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 228 PFKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 228 ~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+.+||+||.++. ..++|+.+|||++.++
T Consensus 372 ~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 372 RVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred hcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 347999999863 3678999999997654
No 379
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.27 E-value=5.1e+02 Score=27.72 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
.+|+|+-.|. --+++|+.|+++|++|++.-
T Consensus 6 ~~~~v~G~g~-----~G~~~a~~l~~~g~~v~~~d 35 (445)
T PRK04308 6 KKILVAGLGG-----TGISMIAYLRKNGAEVAAYD 35 (445)
T ss_pred CEEEEECCCH-----HHHHHHHHHHHCCCEEEEEe
Confidence 4676665542 33456999999999998874
No 380
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.27 E-value=2.8e+02 Score=26.83 Aligned_cols=32 Identities=6% Similarity=-0.009 Sum_probs=22.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++. . =-.++|++|.++|++|.++..
T Consensus 9 k~~lItGas~-g--IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 9 KVAIITGCNT-G--LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CEEEEeCCCc-h--HHHHHHHHHHHCCCEEEEecC
Confidence 5556555543 2 346788999999999988754
No 381
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=27.15 E-value=62 Score=32.96 Aligned_cols=33 Identities=30% Similarity=0.448 Sum_probs=25.9
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
||||.|+-.|..| ..+|..|++.||+|+++...
T Consensus 1 mmkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 1 MMKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 5899888766555 46788889999999998753
No 382
>PRK06179 short chain dehydrogenase; Provisional
Probab=26.93 E-value=3.4e+02 Score=26.42 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=22.3
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
.++++. +.|-+ -.+++++|.++|++|+.++..
T Consensus 6 ~vlVtG-asg~i--G~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 6 VALVTG-ASSGI--GRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred EEEEec-CCCHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 444444 44544 358889999999999988754
No 383
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=26.82 E-value=2.3e+02 Score=29.65 Aligned_cols=33 Identities=27% Similarity=0.245 Sum_probs=21.6
Q ss_pred CCCcEEEeC---CCcccHHHHHHHcCCCEEEEeccC
Q 008369 229 FKPDAIIAN---PPAYGHTHVAESLKVPLHIIFTMP 261 (568)
Q Consensus 229 ~~pDlVI~d---~~~~~~~~~A~~lgIP~v~~~t~p 261 (568)
+++|+||+= ...=.+-.+|..+++|++.+-|++
T Consensus 83 ~~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPTta 118 (366)
T PRK09423 83 NGCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPTIA 118 (366)
T ss_pred cCCCEEEEecChHHHHHHHHHHHHcCCCEEEeCCcc
Confidence 478999972 111234556677799998876653
No 384
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=26.78 E-value=1.2e+02 Score=24.35 Aligned_cols=56 Identities=16% Similarity=0.145 Sum_probs=38.7
Q ss_pred CeEEEEEecCCC--CChHHHHHHHHHHHhCCCeEEEEeC-CCch---hhHhcCCceeeccCC
Q 008369 122 PLHIVMLIVGTR--GDVQPFVAIGKRLQEDGHRVRLATH-ANFK---DFVLGAGLEFFPLGG 177 (568)
Q Consensus 122 ~m~Ili~~~gs~--GHv~P~laLA~~L~~rGH~V~~~t~-~~~~---~~v~~~Gl~f~~i~~ 177 (568)
|-+|+|+|.+.. .+..-...++..|++.|.+|.+-.. .... ......|++|.-+=|
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG 62 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVG 62 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEEC
Confidence 357888887643 4566788999999999999988542 2333 334557888766644
No 385
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=26.76 E-value=7.3e+02 Score=25.67 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=25.2
Q ss_pred CCcEEEe-CCCc-ccHHHHHHHcCCCEEEEeccCCCC
Q 008369 230 KPDAIIA-NPPA-YGHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 230 ~pDlVI~-d~~~-~~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
.||+||. |+.. ..++.=|..+|||+|.+.-+...+
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~dp 188 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCDP 188 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCCc
Confidence 6999866 6543 346677999999999887655443
No 386
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=26.75 E-value=67 Score=30.97 Aligned_cols=37 Identities=16% Similarity=0.096 Sum_probs=31.2
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
=|++...|+.|-..-.-.||++|++++|+|..++.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 3555567899999999999999999999998887654
No 387
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.75 E-value=1.5e+02 Score=29.31 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred ccccEEEEe--CChh----HHHHHHHhCCCEEee
Q 008369 440 SRCLAVVHH--GGAG----TTAAGLKAACPTTIV 467 (568)
Q Consensus 440 ~~~~~~I~H--GG~g----T~~EaL~~GvP~viv 467 (568)
-++|++||- ||.| =+..|...|+|+|++
T Consensus 195 ~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 195 YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 689999995 5543 356688899999998
No 388
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=26.71 E-value=2.5e+02 Score=30.16 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=25.4
Q ss_pred hhccccEEEEeCChh-----------HHHHHHHhCCCEEeecCC
Q 008369 438 LFSRCLAVVHHGGAG-----------TTAAGLKAACPTTIVPFF 470 (568)
Q Consensus 438 ll~~~~~~I~HGG~g-----------T~~EaL~~GvP~vivP~~ 470 (568)
.+.++|++|.-||.. -+..|...|+|+++++..
T Consensus 114 ~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 114 LLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 368999999988742 134667899999999754
No 389
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=26.69 E-value=42 Score=28.68 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCceEEEEcCCCCCCCC-CCCCceEEEcC-------CCChhhhh---ccccEEEEeCChhHHHHH
Q 008369 394 TEIIVKALEITGHRGIINKGWGGLGNL-AESKDFVYLLD-------NCPHDWLF---SRCLAVVHHGGAGTTAAG 457 (568)
Q Consensus 394 ~~~i~~al~~~~~~~Iv~~g~~~~~~l-~~~~~nv~~~~-------~vP~~~ll---~~~~~~I~HGG~gT~~Ea 457 (568)
.-.++.++++.|++.+......+.... ....+.+++.+ |+..+.++ .+..+...|+|+|-+.|.
T Consensus 14 a~r~~ra~r~~Gi~tv~v~s~~d~~s~~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse~ 88 (110)
T PF00289_consen 14 AVRIIRALRELGIETVAVNSNPDTVSTHVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSEN 88 (110)
T ss_dssp HHHHHHHHHHTTSEEEEEEEGGGTTGHHHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTTH
T ss_pred HHHHHHHHHHhCCcceeccCchhcccccccccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHHH
Confidence 444699999999998876543322111 12345555554 66666664 555788889999866554
No 390
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=26.66 E-value=2.6e+02 Score=33.38 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=57.4
Q ss_pred EEcCCCChhhh---hccccEEEEeC---ChhH-HHHHHHhCC---CEEeecCCCChhHHHHHHHHcC-CCCCCCCCCCCC
Q 008369 428 YLLDNCPHDWL---FSRCLAVVHHG---GAGT-TAAGLKAAC---PTTIVPFFGDQPFWGERVHARG-LGPAPIPVEEFS 496 (568)
Q Consensus 428 ~~~~~vP~~~l---l~~~~~~I~HG---G~gT-~~EaL~~Gv---P~vivP~~~DQ~~na~~v~~~G-~G~~~i~~~~lt 496 (568)
++...+|+.++ +..+|+++.-. |+|. ..|.++++. -+++++-|.-. +.. +| -|+ .+ .-.+
T Consensus 443 ~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGa---a~~---L~~~Al-lV--NP~D 513 (934)
T PLN03064 443 HLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGA---AQS---LGAGAI-LV--NPWN 513 (934)
T ss_pred EeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCch---HHH---hCCceE-EE--CCCC
Confidence 34455787766 58999998754 7764 459999955 23333433221 122 23 233 33 3567
Q ss_pred HHHHHHHHHHhc--CHHHHH-HHHHHHHHhhcCCcHHHHHHHHHH
Q 008369 497 LDKLVDAIRFML--DPKVKE-HAVELAKAMENEDGVTGAVKAFYK 538 (568)
Q Consensus 497 ~e~L~~aI~~lL--d~~~r~-~a~~la~~~~~~~g~~~av~~i~~ 538 (568)
.+++++||.++| +++.++ +.+++.+.+.. ..+..=++.|.+
T Consensus 514 ~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~~-~d~~~Wa~~fl~ 557 (934)
T PLN03064 514 ITEVAASIAQALNMPEEEREKRHRHNFMHVTT-HTAQEWAETFVS 557 (934)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhccc-CCHHHHHHHHHH
Confidence 899999999977 454444 44444444443 444444444333
No 391
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=26.52 E-value=47 Score=29.50 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcC
Q 008369 136 VQPFVAIGKRLQEDGHRVRLATHANFKDFVLGA 168 (568)
Q Consensus 136 v~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~ 168 (568)
+--++-++..|+++||+|++++.+.....++.+
T Consensus 13 ~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 13 TPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 344688899999999999999998877777654
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.50 E-value=1.5e+02 Score=28.02 Aligned_cols=52 Identities=17% Similarity=0.349 Sum_probs=38.5
Q ss_pred EEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeeccC
Q 008369 125 IVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFPLG 176 (568)
Q Consensus 125 Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~i~ 176 (568)
|+|+-..+-|=-.-...||..++.+|.+|.++|.+.++ .+.+..|++++...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 44444557799999999999999889999999987764 44555678877654
No 393
>PRK06182 short chain dehydrogenase; Validated
Probab=26.50 E-value=3.6e+02 Score=26.31 Aligned_cols=20 Identities=30% Similarity=0.210 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 008369 139 FVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 139 ~laLA~~L~~rGH~V~~~t~ 158 (568)
-.+++++|.++||+|..+..
T Consensus 16 G~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 16 GKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 45688999999999988764
No 394
>PRK06756 flavodoxin; Provisional
Probab=26.41 E-value=1.2e+02 Score=26.97 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=29.3
Q ss_pred CeEEEEEecCCCCChHHH-HHHHHHHHhCCCeEEEEe
Q 008369 122 PLHIVMLIVGTRGDVQPF-VAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~-laLA~~L~~rGH~V~~~t 157 (568)
||||+|+-....||..-+ -.+++.|.+.|++|.+..
T Consensus 1 mmkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 1 MSKLVMIFASMSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred CceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 589988877788998764 667899999999998764
No 395
>PRK03202 6-phosphofructokinase; Provisional
Probab=26.33 E-value=3.6e+02 Score=27.80 Aligned_cols=117 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred CeEEEEEecC--CCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCC
Q 008369 122 PLHIVMLIVG--TRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSE 199 (568)
Q Consensus 122 ~m~Ili~~~g--s~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~ 199 (568)
|+||+|+..| +.|==.-..++.+.+.++|++|.-+-+. +..+++. ++..+ +...+..+.......+-.....
T Consensus 1 mk~i~Il~sGG~apG~Na~i~~~~~~~~~~g~~v~g~~~G-~~GL~~~---~~~~l--~~~~v~~~~~~gGs~LgtsR~~ 74 (320)
T PRK03202 1 MKRIGVLTSGGDAPGMNAAIRAVVRTAISEGLEVYGIYDG-YAGLLEG---DIVKL--DLKSVSDIINRGGTILGSARFP 74 (320)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHHHCCCeEEEEecC-hhhhcCC---CEEEC--CHHHHhhHHhCCCcccccCCCC
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEe---CCCcccHHHHHHHcCCCEEEE
Q 008369 200 IPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIA---NPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~---d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.......+..+++ .++..+.|.+|. |-....+..+++. +||++.+
T Consensus 75 ~~~~~~~~~~~~~------------~l~~~~Id~Li~IGGd~s~~~a~~L~e~-~i~vigi 122 (320)
T PRK03202 75 EFKDEEGRAKAIE------------NLKKLGIDALVVIGGDGSYMGAKRLTEH-GIPVIGL 122 (320)
T ss_pred CcCCHHHHHHHHH------------HHHHcCCCEEEEeCChHHHHHHHHHHhc-CCcEEEe
No 396
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=26.13 E-value=4.3e+02 Score=24.86 Aligned_cols=51 Identities=27% Similarity=0.311 Sum_probs=32.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCC--eEEEE-eCC-Cc--hhhHhcCCceeeccC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGH--RVRLA-THA-NF--KDFVLGAGLEFFPLG 176 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH--~V~~~-t~~-~~--~~~v~~~Gl~f~~i~ 176 (568)
|||+|+..|...= +.++.+.+++.++ +|.++ +.. +. .++.++.|++++.+.
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~ 57 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLS 57 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEEC
Confidence 6888888866543 4466777777665 66654 332 23 356778899887653
No 397
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.10 E-value=88 Score=27.58 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=40.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
+|++.+.++-+|-.----++..|...|++|.-+... .+.+.+.+.+..++-+.
T Consensus 1 ~vvigtv~gD~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS 57 (128)
T cd02072 1 TIVLGVIGSDCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVS 57 (128)
T ss_pred CEEEEEeCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 578889999999998888899999999999988643 34444555566655554
No 398
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=26.08 E-value=2.9e+02 Score=30.00 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=21.0
Q ss_pred CCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
+||++|++... ..+|+++|||++-+
T Consensus 395 ~pDllig~~~~---~~~a~k~gip~~~~ 419 (457)
T TIGR01284 395 KPDIILTGIRE---GELAKKLGVPYINI 419 (457)
T ss_pred CCCEEEecCCc---chhhhhcCCCEEEc
Confidence 79999998654 56999999999875
No 399
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.01 E-value=3.6e+02 Score=26.01 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=24.0
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++.| --.++|+.|.++|++|.++..
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 46666666554 457888999999999998864
No 400
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=25.89 E-value=7.4e+02 Score=25.48 Aligned_cols=33 Identities=18% Similarity=0.024 Sum_probs=24.5
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
..||.++-.|..| ..+|..|+.+||+|+++-..
T Consensus 7 i~~VaVIGaG~MG-----~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIGSGVIG-----SGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 3568887666554 36788888999999999653
No 401
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=25.84 E-value=2.3e+02 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=25.3
Q ss_pred CCcEEEe-CCCcc-cHHHHHHHcCCCEEEEeccCCCC
Q 008369 230 KPDAIIA-NPPAY-GHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 230 ~pDlVI~-d~~~~-~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
.||+||. |+..- -++.=|.++|||++.+.-+...+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~dp 150 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDNLT 150 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCCCc
Confidence 6899865 65432 46677999999999987655443
No 402
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.84 E-value=3.6e+02 Score=27.64 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=13.8
Q ss_pred cHHHHHHHcCCCEEEEec
Q 008369 242 GHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 242 ~~~~~A~~lgIP~v~~~t 259 (568)
....+|+.+++|++....
T Consensus 213 ~~A~~Ak~~~vPv~V~a~ 230 (310)
T PRK08535 213 QIALAAHEARVPFMVAAE 230 (310)
T ss_pred HHHHHHHHhCCCEEEecc
Confidence 345789999999987654
No 403
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=25.83 E-value=5.4e+02 Score=26.31 Aligned_cols=70 Identities=9% Similarity=-0.073 Sum_probs=42.1
Q ss_pred CCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhH
Q 008369 374 GEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGT 453 (568)
Q Consensus 374 ~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT 453 (568)
++.+..|++|++.. .+++-++..|.+++.+..... ..+.-..+......+++++.+|.++.|.-.+.
T Consensus 136 g~tvgIvG~G~IG~--------~vA~~l~afG~~V~~~~~~~~-----~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~ 202 (312)
T PRK15469 136 DFTIGILGAGVLGS--------KVAQSLQTWGFPLRCWSRSRK-----SWPGVQSFAGREELSAFLSQTRVLINLLPNTP 202 (312)
T ss_pred CCEEEEECCCHHHH--------HHHHHHHHCCCEEEEEeCCCC-----CCCCceeecccccHHHHHhcCCEEEECCCCCH
Confidence 45578899999752 246666678998776542111 01110112233345677899999999998654
Q ss_pred HHH
Q 008369 454 TAA 456 (568)
Q Consensus 454 ~~E 456 (568)
-.+
T Consensus 203 ~T~ 205 (312)
T PRK15469 203 ETV 205 (312)
T ss_pred HHH
Confidence 433
No 404
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=25.81 E-value=1e+02 Score=28.71 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=34.2
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLG 167 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~ 167 (568)
..+++|...++.|=-.=..++|+++.++|+.|.|++..+..+.++.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~ 92 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQ 92 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHC
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccc
Confidence 4678888888888777799999999999999999987665555543
No 405
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=25.67 E-value=78 Score=32.71 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=42.9
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccC
Q 008369 119 GIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 119 ~~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~ 176 (568)
..+.++|.|+.+|-.|.+ +|+.|.++||.|....-+++.+..++.|..++...
T Consensus 49 ~k~tl~IaIIGfGnmGqf-----lAetli~aGh~li~hsRsdyssaa~~yg~~~ft~l 101 (480)
T KOG2380|consen 49 WKATLVIAIIGFGNMGQF-----LAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLL 101 (480)
T ss_pred cccceEEEEEecCcHHHH-----HHHHHHhcCceeEecCcchhHHHHHHhcccccccH
Confidence 346689999988877754 68999999999998887778888888887777654
No 406
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=25.63 E-value=2.5e+02 Score=26.57 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=20.2
Q ss_pred cCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 130 VGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 130 ~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
.|+.|.+ -..+++.|.++||+|.++...
T Consensus 4 tG~~g~i--G~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 4 TGASRGI--GRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred ECCCcHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4444433 567889999999999888643
No 407
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=25.61 E-value=60 Score=34.31 Aligned_cols=42 Identities=24% Similarity=0.291 Sum_probs=32.4
Q ss_pred eEEEEEecCCC--CChHHHHHHHHHHHhCCCeEEEEeC-CCchhhHhcCCc
Q 008369 123 LHIVMLIVGTR--GDVQPFVAIGKRLQEDGHRVRLATH-ANFKDFVLGAGL 170 (568)
Q Consensus 123 m~Ili~~~gs~--GHv~P~laLA~~L~~rGH~V~~~t~-~~~~~~v~~~Gl 170 (568)
|||+++-.|.. || ++..|.+.|++|+++.- +...+.+.+.|+
T Consensus 1 mki~~~GaGa~gr~~------~~~~l~~~g~~V~~vd~~~~~v~aL~~qgl 45 (381)
T PRK02318 1 MKAVHFGAGNIGRGF------IGKLLADNGFEVTFVDVNQELIDALNKRKS 45 (381)
T ss_pred CceEEECCchhhHHH------HHHHHHhCCCeEEEEECCHHHHHHHhcCCC
Confidence 78998888754 46 78888889999999974 346677777775
No 408
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=25.45 E-value=4.3e+02 Score=25.26 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=58.8
Q ss_pred CCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCCCChhhhhccccEEEEeCChhH-
Q 008369 375 EKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDNCPHDWLFSRCLAVVHHGGAGT- 453 (568)
Q Consensus 375 ~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~~~ll~~~~~~I~HGG~gT- 453 (568)
...|-|-+|-+......+++.. +......+.++++.+...+.. -.++.++||.|..-
T Consensus 26 ~G~i~vI~gPMfSGKTt~LLrr-~r~~~~~grrv~liK~~kDTR---------------------y~~~si~Thdg~~~~ 83 (234)
T KOG3125|consen 26 RGTIHVILGPMFSGKTTELLRR-IRREIIAGRRVLLIKYAKDTR---------------------YESSSIVTHDGIEMP 83 (234)
T ss_pred CceEEEEeccccCcchHHHHHH-HHHHHhcCceEEEEEecCCcc---------------------cchheeEeccCCccc
Confidence 3467777888877766667766 555566799998887544311 11245666666522
Q ss_pred -------------HHHHHHhCCCEEeec---CCCChhHHHHHHHH-cCCCC
Q 008369 454 -------------TAAGLKAACPTTIVP---FFGDQPFWGERVHA-RGLGP 487 (568)
Q Consensus 454 -------------~~EaL~~GvP~vivP---~~~DQ~~na~~v~~-~G~G~ 487 (568)
..+++...+-+|.+- ||+||....+.+++ .|--+
T Consensus 84 c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~V 134 (234)
T KOG3125|consen 84 CWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTV 134 (234)
T ss_pred ccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEE
Confidence 233444457777774 78899999888877 67554
No 409
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.42 E-value=77 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.4
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
+|||.|+-.|..| .++|..|.+.||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5899998777665 56889999999999999764
No 410
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.39 E-value=2.7e+02 Score=30.46 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=21.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
.+|+|+-.|..| ++.++.|+++|++|++.
T Consensus 13 ~~v~V~G~G~sG-----~aa~~~L~~~G~~v~~~ 41 (488)
T PRK03369 13 APVLVAGAGVTG-----RAVLAALTRFGARPTVC 41 (488)
T ss_pred CeEEEEcCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 577777666444 55667899999999884
No 411
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=25.30 E-value=1.1e+02 Score=29.58 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=44.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC----CchhhHhcCCceeeccC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA----NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~----~~~~~v~~~Gl~f~~i~ 176 (568)
..-||++.+.++-.|-....-++-.|..+|++|..+... .+.+.+.+.+..++-+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~~~~~V~lS 146 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLS 146 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEc
Confidence 446899999999999999999999999999999999643 35555666666666554
No 412
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed
Probab=25.11 E-value=3.2e+02 Score=28.52 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.5
Q ss_pred ccHHHHHHHcCCCEEEEec
Q 008369 241 YGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 241 ~~~~~~A~~lgIP~v~~~t 259 (568)
+....+|+.+|||++....
T Consensus 249 ~~lAl~Ak~~~vPfyV~a~ 267 (344)
T PRK05720 249 YQLAIAAKYHGVPFYVAAP 267 (344)
T ss_pred HHHHHHHHHhCCCEEEecc
Confidence 3455789999999987654
No 413
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=24.99 E-value=63 Score=32.02 Aligned_cols=36 Identities=28% Similarity=0.287 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCeEEEEeCC------CchhhHhcCCceeeccC
Q 008369 141 AIGKRLQEDGHRVRLATHA------NFKDFVLGAGLEFFPLG 176 (568)
Q Consensus 141 aLA~~L~~rGH~V~~~t~~------~~~~~v~~~Gl~f~~i~ 176 (568)
++|-++++.||+|.++-+. +.-+.++++|++...-+
T Consensus 35 ~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD 76 (340)
T COG4007 35 RMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDD 76 (340)
T ss_pred HHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCc
Confidence 5788999999999998542 23577899999987643
No 414
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.83 E-value=3.3e+02 Score=26.06 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=22.5
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|.++++.++ |.+ -.++|++|.++|++|.++...
T Consensus 6 k~vlItGas-~gI--G~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 6 KVALVTGAN-TGL--GQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CEEEEECCC-chH--HHHHHHHHHHCCCEEEEEcCc
Confidence 334444443 333 578899999999999888753
No 415
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=24.78 E-value=3.9e+02 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=14.0
Q ss_pred cHHHHHHHcCCCEEEEec
Q 008369 242 GHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 242 ~~~~~A~~lgIP~v~~~t 259 (568)
....+|+.+|||++...+
T Consensus 271 ~lA~~Ak~~~vPfyV~ap 288 (363)
T PRK05772 271 KEAVIAHELGIPFYALAP 288 (363)
T ss_pred HHHHHHHHhCCCEEEEcc
Confidence 345789999999988653
No 416
>PRK10481 hypothetical protein; Provisional
Probab=24.66 E-value=1.4e+02 Score=29.06 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCCcEEEeCCCccc---HHHHHHHcCCCEEE
Q 008369 228 PFKPDAIIANPPAYG---HTHVAESLKVPLHI 256 (568)
Q Consensus 228 ~~~pDlVI~d~~~~~---~~~~A~~lgIP~v~ 256 (568)
...+|+|+-+-..+. ...+.+.+|+|++.
T Consensus 180 ~~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~ 211 (224)
T PRK10481 180 DQGADVIVLDCLGYHQRHRDLLQKALDVPVLL 211 (224)
T ss_pred cCCCCEEEEeCCCcCHHHHHHHHHHHCcCEEc
Confidence 347899998755554 34567889999987
No 417
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.65 E-value=6.8e+02 Score=24.67 Aligned_cols=77 Identities=19% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCCCChhHHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 008369 150 GHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGPSEIPIQRNQLKEIIYSLLPACKDPDPDTMVPF 229 (568)
Q Consensus 150 GH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (568)
..+..+.+|+.|.-+.+..|++...+.. .+..|+ .+.+.++.+.+ ++.
T Consensus 169 ~~~~~v~~H~af~Y~~~~ygl~~~~~~~------------~~~eps--------~~~l~~l~~~i------------k~~ 216 (266)
T cd01018 169 KQRAFMVYHPAWGYFARDYGLTQIPIEE------------EGKEPS--------PADLKRLIDLA------------KEK 216 (266)
T ss_pred CCCeEEEECchhHHHHHHcCCEEEecCC------------CCCCCC--------HHHHHHHHHHH------------HHc
Confidence 3456677899999999999999876421 011111 23333433322 123
Q ss_pred CCcEEEeCCCcc--cHHHHHHHcCCCEEEEe
Q 008369 230 KPDAIIANPPAY--GHTHVAESLKVPLHIIF 258 (568)
Q Consensus 230 ~pDlVI~d~~~~--~~~~~A~~lgIP~v~~~ 258 (568)
+..+|+.++... ..-.+|+..|+|++.+.
T Consensus 217 ~v~~if~e~~~~~~~~~~la~~~g~~v~~ld 247 (266)
T cd01018 217 GVRVVFVQPQFSTKSAEAIAREIGAKVVTID 247 (266)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeC
Confidence 678999986543 35578999999987754
No 418
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=24.54 E-value=1.5e+02 Score=27.31 Aligned_cols=39 Identities=21% Similarity=0.332 Sum_probs=30.8
Q ss_pred CeEEE-EEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIV-MLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Il-i~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
||+|+ |+.+-..|=..=.-.|.+.|.++|++|..+-|..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~h 40 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAH 40 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecC
Confidence 56665 4444567888889999999999999999996543
No 419
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=24.49 E-value=5.4e+02 Score=23.40 Aligned_cols=97 Identities=16% Similarity=0.027 Sum_probs=51.6
Q ss_pred hhhHHhhhcCCCcEEEeCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCCCCCCCceEEEcCC-CChhhhh-ccc
Q 008369 365 DSLVKWLEDGEKPIYIGFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGNLAESKDFVYLLDN-CPHDWLF-SRC 442 (568)
Q Consensus 365 ~~l~~~L~~~~p~VyVsfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~l~~~~~nv~~~~~-vP~~~ll-~~~ 442 (568)
.++-++|.+.. ...++.|... +...+.++..+.+-+++=+.... +.......+.....++ .+-..++ ..+
T Consensus 21 ~~lg~~La~~g-~~lv~Gg~~G------lM~a~a~ga~~~gg~viGVlp~~-l~~~~~~~~~~i~~~~~~~Rk~~m~~~s 92 (159)
T TIGR00725 21 YRLGKELAKKG-HILINGGRTG------VMEAVSKGAREAGGLVVGILPDE-DFAGNPYLTIKVKTGMNFARNFILVRSA 92 (159)
T ss_pred HHHHHHHHHCC-CEEEcCCchh------HHHHHHHHHHHCCCeEEEECChh-hccCCCCceEEEECCCcchHHHHHHHHC
Confidence 45666775543 4555544332 34445666666666665333221 1111111122233444 4445554 667
Q ss_pred cEEEE-eCChhHHHH---HHHhCCCEEeecC
Q 008369 443 LAVVH-HGGAGTTAA---GLKAACPTTIVPF 469 (568)
Q Consensus 443 ~~~I~-HGG~gT~~E---aL~~GvP~vivP~ 469 (568)
|+||- -||.||+.| ++.+++|+++++.
T Consensus 93 da~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 93 DVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 77654 566777654 6789999999974
No 420
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.48 E-value=3.3e+02 Score=27.77 Aligned_cols=17 Identities=12% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHcCCCEEEEec
Q 008369 243 HTHVAESLKVPLHIIFT 259 (568)
Q Consensus 243 ~~~~A~~lgIP~v~~~t 259 (568)
...+|+.+|+|++....
T Consensus 223 lA~~Ak~~~vPv~V~a~ 239 (303)
T TIGR00524 223 LAVLAKEFRIPFFVAAP 239 (303)
T ss_pred HHHHHHHhCCCEEEecc
Confidence 45789999999988654
No 421
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=24.40 E-value=2.5e+02 Score=27.33 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|.++++.++.| + -.++++.|.++|++|.++..
T Consensus 6 k~vlItGas~g-I--G~~ia~~l~~~G~~V~~~~r 37 (262)
T TIGR03325 6 EVVLVTGGASG-L--GRAIVDRFVAEGARVAVLDK 37 (262)
T ss_pred cEEEEECCCCh-H--HHHHHHHHHHCCCEEEEEeC
Confidence 45555555543 2 36788999999999988753
No 422
>PRK05246 glutathione synthetase; Provisional
Probab=24.37 E-value=1.2e+02 Score=31.06 Aligned_cols=40 Identities=10% Similarity=0.093 Sum_probs=30.8
Q ss_pred CeEEEEEecC--C-CCChHHHHHHHHHHHhCCCeEEEEeCCCc
Q 008369 122 PLHIVMLIVG--T-RGDVQPFVAIGKRLQEDGHRVRLATHANF 161 (568)
Q Consensus 122 ~m~Ili~~~g--s-~GHv~P~laLA~~L~~rGH~V~~~t~~~~ 161 (568)
.|||+|+.-+ + .-......+|+++-+++||+|.++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl 43 (316)
T PRK05246 1 MMKVAFQMDPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDL 43 (316)
T ss_pred CceEEEEeCCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhc
Confidence 3788888754 2 23445678899999999999999998654
No 423
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=24.33 E-value=1.1e+02 Score=31.47 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=21.1
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
|||+|+..+. -.+...++|.++||+|..+.
T Consensus 1 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vv 30 (313)
T TIGR00460 1 LRIVFFGTPT-----FSLPVLEELREDNFEVVGVV 30 (313)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCcEEEEE
Confidence 7888875443 23666788888999987553
No 424
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=24.10 E-value=2.6e+02 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=38.1
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch--------hhHhcCCceeecc
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK--------DFVLGAGLEFFPL 175 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~--------~~v~~~Gl~f~~i 175 (568)
-|+|+..++-|=-.-...||..|++.|++|.+++.+.++ .+.+..|++++..
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~ 133 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQ 133 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeC
Confidence 344555557788899999999999999999999877542 2345566666544
No 425
>PRK07856 short chain dehydrogenase; Provisional
Probab=24.01 E-value=3.1e+02 Score=26.38 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=22.3
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|.++++.++.| + -.++++.|+++|++|.++...
T Consensus 7 k~~lItGas~g-I--G~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRG-I--GAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCch-H--HHHHHHHHHHCCCEEEEEeCC
Confidence 44455554433 2 357788999999999888654
No 426
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=23.95 E-value=77 Score=30.78 Aligned_cols=32 Identities=28% Similarity=0.589 Sum_probs=24.4
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|+|+|+-.|--| ..+|+.|.+.||+|+++-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcC
Confidence 567776655433 57899999999999999544
No 427
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=23.73 E-value=1.4e+02 Score=28.11 Aligned_cols=36 Identities=11% Similarity=0.220 Sum_probs=27.4
Q ss_pred eEEEEEecC--CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVG--TRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~g--s~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+|++.++.+ +-|=-.-...||..|+++|++|.++=-
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 676655543 456667789999999999999998843
No 428
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=23.71 E-value=1.6e+02 Score=27.59 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|||.++-. ||+- +.+|-.|++.||+|+.+-..
T Consensus 1 M~I~ViGl---GyvG--l~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGL---GYVG--LPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECC---Ccch--HHHHHHHHhCCCEEEEEeCC
Confidence 77777744 4443 67888999999999988543
No 429
>PRK12828 short chain dehydrogenase; Provisional
Probab=23.54 E-value=4.7e+02 Score=24.56 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=20.4
Q ss_pred cCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 130 VGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 130 ~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
.|+.|.+- ..+++.|.++|++|++++.
T Consensus 13 tGatg~iG--~~la~~l~~~G~~v~~~~r 39 (239)
T PRK12828 13 TGGFGGLG--RATAAWLAARGARVALIGR 39 (239)
T ss_pred ECCCCcHh--HHHHHHHHHCCCeEEEEeC
Confidence 44556553 6778999999999988875
No 430
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.44 E-value=3.2e+02 Score=26.05 Aligned_cols=29 Identities=28% Similarity=0.352 Sum_probs=21.5
Q ss_pred ecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 129 IVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 129 ~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
..|+.|.+ -..+++.|.++|++|++++..
T Consensus 11 ItGasg~i--G~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 11 VTGAARGI--GRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred EcCCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 35555665 467888899999999888653
No 431
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.43 E-value=1.5e+02 Score=31.88 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
.+||++|.+.. ...+|+++|||+..+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 38999999876 3579999999997653
No 432
>PRK06484 short chain dehydrogenase; Validated
Probab=23.42 E-value=2.4e+02 Score=30.90 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=23.5
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++.| =-.++|+.|.++|++|.++..
T Consensus 6 k~~lITGas~g---IG~aia~~l~~~G~~V~~~~r 37 (520)
T PRK06484 6 RVVLVTGAAGG---IGRAACQRFARAGDQVVVADR 37 (520)
T ss_pred eEEEEECCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 56666666554 346789999999999988753
No 433
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=23.34 E-value=1.6e+02 Score=32.35 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=35.6
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
+++++|...- =.-++.+|+.|.+.|.++. ++....+++++.|+++..+
T Consensus 4 ~~~aLISVsD----K~~iv~lAk~L~~lGfeI~--AT~GTak~L~e~GI~v~~V 51 (513)
T PRK00881 4 IKRALISVSD----KTGIVEFAKALVELGVEIL--STGGTAKLLAEAGIPVTEV 51 (513)
T ss_pred cCEEEEEEeC----cccHHHHHHHHHHCCCEEE--EcchHHHHHHHCCCeeEEe
Confidence 3456665553 4558899999999999983 4456788999999977555
No 434
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=23.22 E-value=2.8e+02 Score=24.41 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=41.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCC-eEEEEeC----CCchhhHhcCCc-eeeccCCChHH
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGH-RVRLATH----ANFKDFVLGAGL-EFFPLGGDPKI 181 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH-~V~~~t~----~~~~~~v~~~Gl-~f~~i~~~~~~ 181 (568)
...|+.++.-..+|..-+-.+.++|+++|. ++.++.. ..-.+..++.|+ .|+.-+.+..+
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~ 118 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPE 118 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHH
Confidence 466777777777899999999999999987 5655543 222345667887 45555554443
No 435
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=23.04 E-value=4.5e+02 Score=26.32 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=23.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
++-++++..|.|= -.++|+.|+++||+|.++.-.
T Consensus 6 ~~~~lITGASsGI---G~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 6 GKTALITGASSGI---GAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CcEEEEECCCchH---HHHHHHHHHHCCCEEEEEeCc
Confidence 4444455444431 367899999999999999754
No 436
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=22.97 E-value=1.2e+02 Score=30.95 Aligned_cols=47 Identities=23% Similarity=0.270 Sum_probs=33.0
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-chhhHh-cCCceee
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN-FKDFVL-GAGLEFF 173 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~-~~~~v~-~~Gl~f~ 173 (568)
.|||+|+-.|+-|=+ +|-.|++.||+|+++.... ..+.+. +.|+...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~ 50 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRDRQRLAAYQQAGGLTLV 50 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEe
Confidence 489999988877643 4566888999999998753 334444 4566544
No 437
>PRK03673 hypothetical protein; Provisional
Probab=22.94 E-value=6.9e+02 Score=26.61 Aligned_cols=36 Identities=17% Similarity=0.223 Sum_probs=26.8
Q ss_pred CeEEEEEecCC---CCChH--HHHHHHHHHHhCCCeEEEEe
Q 008369 122 PLHIVMLIVGT---RGDVQ--PFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 122 ~m~Ili~~~gs---~GHv~--P~laLA~~L~~rGH~V~~~t 157 (568)
|||+.|++.|. .|++. -..-|++.|.+.|++|...+
T Consensus 1 ~~~v~Iis~GdEll~G~i~dtN~~~la~~L~~~G~~v~~~~ 41 (396)
T PRK03673 1 MLRVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRN 41 (396)
T ss_pred CCEEEEEEecccCCCCeEEEhHHHHHHHHHHHCCCEEEEEE
Confidence 58888888884 47652 35667888999998887665
No 438
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=22.89 E-value=98 Score=30.60 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=36.7
Q ss_pred cccEEEEeCChhHHHHHHHh----CCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 441 RCLAVVHHGGAGTTAAGLKA----ACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 441 ~~~~~I~HGG~gT~~EaL~~----GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
.+|++|+-||=||++.++.. ++|++.+-.. .+|. .. +....+++.+++..+.
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G-------------~lGF-L~--~~~~~~e~~~~l~~~~ 80 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG-------------SVGF-LM--NEYSEDDLLERIAAAE 80 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC-------------CCCc-cc--CCCCHHHHHHHHHHhh
Confidence 47999999999999988764 6888887531 2454 22 1245677888877766
No 439
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=22.86 E-value=4.2e+02 Score=26.97 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=14.0
Q ss_pred cHHHHHHHcCCCEEEEec
Q 008369 242 GHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 242 ~~~~~A~~lgIP~v~~~t 259 (568)
....+|+.+++|++....
T Consensus 208 ~lA~~Ak~~~vPv~V~a~ 225 (301)
T TIGR00511 208 QLALAAREARVPFMVAAE 225 (301)
T ss_pred HHHHHHHHhCCCEEEEcc
Confidence 345789999999988654
No 440
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.81 E-value=4.2e+02 Score=26.87 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=57.0
Q ss_pred eEecceeccCCCCCCCChhhHHhhhcCC-CcEEE-eCCCCCCCChHHHHHHHHHHHHHcCceEEEEcCCCCCCC-CCCCC
Q 008369 348 DVVGFCFLDLASTYEPPDSLVKWLEDGE-KPIYI-GFGSLPVEEPEKMTEIIVKALEITGHRGIINKGWGGLGN-LAESK 424 (568)
Q Consensus 348 ~~vGpl~~~~~~~~~~~~~l~~~L~~~~-p~VyV-sfGS~~~~~~~~l~~~i~~al~~~~~~~Iv~~g~~~~~~-l~~~~ 424 (568)
.|+|+...++......-.+++....+.. .-+-+ ........+...+.. +.++++++|+.+++-+|...... ....
T Consensus 99 rf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~p-i~~~a~~~gvpv~ihtG~~~~~~~~~~~- 176 (293)
T COG2159 99 RFVGFARVDPRDPEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYP-IYEAAEELGVPVVIHTGAGPGGAGLEKG- 176 (293)
T ss_pred ceeeeeeeCCCchHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHH-HHHHHHHcCCCEEEEeCCCCCCcccccC-
Confidence 3455544443321112235555555432 22333 222222334443444 59999999999999877554211 1110
Q ss_pred ceEEEcCCCC--hhhh---hccccEEEEeCC--hhHHHHH--HHhCCCEEee
Q 008369 425 DFVYLLDNCP--HDWL---FSRCLAVVHHGG--AGTTAAG--LKAACPTTIV 467 (568)
Q Consensus 425 ~nv~~~~~vP--~~~l---l~~~~~~I~HGG--~gT~~Ea--L~~GvP~viv 467 (568)
...| -+.+ ||+...++.|+| ..=..|+ ++.-.|.+-+
T Consensus 177 ------~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a~~~a~~~~nvy~ 222 (293)
T COG2159 177 ------HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEAIELAYAHPNVYL 222 (293)
T ss_pred ------CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHHHHHHHhCCCcee
Confidence 1112 2333 599999999999 5444444 3344454443
No 441
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=22.80 E-value=1.1e+02 Score=30.67 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=23.1
Q ss_pred EecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 128 LIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 128 ~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
+..|+.|.+- ..|+++|.++||+|+.+...
T Consensus 4 LVtG~tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 4 LVTGGAGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred EEEcCcccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 3344456665 78999999999999999853
No 442
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=22.79 E-value=3.4e+02 Score=26.14 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=16.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 008369 139 FVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 139 ~laLA~~L~~rGH~V~~~t~~ 159 (568)
-.++++.|.++|++|.+....
T Consensus 23 G~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 23 GYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred HHHHHHHHHHcCCEEEEEeCC
Confidence 467889999999999877543
No 443
>PRK07023 short chain dehydrogenase; Provisional
Probab=22.79 E-value=1.9e+02 Score=27.70 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=22.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
||+|+|. |+.|-+ -.++++.|.++|++|.+++...
T Consensus 1 ~~~vlIt--Gasggi--G~~ia~~l~~~G~~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVT--GHSRGL--GAALAEQLLQPGIAVLGVARSR 35 (243)
T ss_pred CceEEEe--cCCcch--HHHHHHHHHhCCCEEEEEecCc
Confidence 4565543 333322 3567888999999998886543
No 444
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=22.76 E-value=1.8e+02 Score=28.67 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=38.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCC-CeEEEEeCCCchhhHhcCCcee
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDG-HRVRLATHANFKDFVLGAGLEF 172 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rG-H~V~~~t~~~~~~~v~~~Gl~f 172 (568)
|||+|+-=|+.|--.-...|+++|.++| ++|..+=.+.....-...|++.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL~~~LGve~ 51 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNLPEALGVEE 51 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCChHHhcCCCC
Confidence 7888888888888777767688887775 9999996555666677778765
No 445
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.74 E-value=3e+02 Score=26.82 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=22.1
Q ss_pred EEEEEecC--CCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 124 HIVMLIVG--TRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 124 ~Ili~~~g--s~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
|+++++.+ +.| =-.++|+.|+++|++|.+..
T Consensus 8 k~~lItGa~~s~G---IG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 8 KRILVTGVITDSS---IAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CEEEEeCCCCcch---HHHHHHHHHHHCCCEEEEec
Confidence 45556555 444 34578999999999998875
No 446
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=22.72 E-value=5.8e+02 Score=24.49 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=21.8
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|+++++.++ |.+- .++|+.|.++|++|.++...
T Consensus 8 k~~lItGas-~gIG--~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 8 KVALITGGT-RGIG--RAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred CEEEEeCCC-ChHH--HHHHHHHHHCCCEEEEEeCC
Confidence 344444443 3333 56899999999999887543
No 447
>PRK06988 putative formyltransferase; Provisional
Probab=22.64 E-value=1.5e+02 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.043 Sum_probs=22.3
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
||||+|+..+. -.+...++|.++||+|..+.+
T Consensus 2 ~mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt 33 (312)
T PRK06988 2 KPRAVVFAYHN-----VGVRCLQVLLARGVDVALVVT 33 (312)
T ss_pred CcEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEc
Confidence 58999985543 335566777788999876643
No 448
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=22.64 E-value=3.1e+02 Score=31.24 Aligned_cols=32 Identities=16% Similarity=0.090 Sum_probs=20.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEE-EEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVR-LATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~-~~t~~ 159 (568)
|||+|+..+.. ....-++|.+.||+|. ++|.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~~~~i~~V~t~p 33 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAAGYEIAAVFTHT 33 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHCCCcEEEEEeCC
Confidence 78888743321 2344478888999998 56654
No 449
>PRK07806 short chain dehydrogenase; Provisional
Probab=22.52 E-value=5.6e+02 Score=24.33 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHhCCCeEEEEeC
Q 008369 140 VAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 140 laLA~~L~~rGH~V~~~t~ 158 (568)
.++++.|.++||+|++++.
T Consensus 20 ~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 20 ADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 5678889999999988754
No 450
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=22.51 E-value=4.5e+02 Score=29.53 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=32.3
Q ss_pred ccccEEE------EeCChhHHHHHHHhCCC--E--EeecC-CCChhHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHhc
Q 008369 440 SRCLAVV------HHGGAGTTAAGLKAACP--T--TIVPF-FGDQPFWGERVHARGLGPAPIPVEEFSLDKLVDAIRFML 508 (568)
Q Consensus 440 ~~~~~~I------~HGG~gT~~EaL~~GvP--~--vivP~-~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L~~aI~~lL 508 (568)
+....+| .+||+|+.........+ + +.+|- |++.-......+..| +|++.+.+.|++++
T Consensus 511 ~~~~~vvtvEe~~~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~G----------l~~~~I~~~i~~~l 580 (581)
T PRK12315 511 EDHELVVTLEDGILDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRNH----------LTPEQIVEDILSVL 580 (581)
T ss_pred hhCCEEEEEcCCCcCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHHC----------cCHHHHHHHHHHHh
Confidence 5555655 46999887666654433 3 33443 444333333333333 36678888877654
No 451
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.40 E-value=4.5e+02 Score=26.65 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=36.1
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEe--CCCchhhHhcCCceeeccCC
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLAT--HANFKDFVLGAGLEFFPLGG 177 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t--~~~~~~~v~~~Gl~f~~i~~ 177 (568)
..+|||+++..|. ||- +-+|.++.++. ..+|.++. +++..+..++.|++++.++.
T Consensus 91 ~~~~kiavl~Sg~-g~n--l~al~~~~~~~~l~~~i~~visn~~~~~~~A~~~gIp~~~~~~ 149 (289)
T PRK13010 91 GQRPKVVIMVSKF-DHC--LNDLLYRWRMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV 149 (289)
T ss_pred CCCeEEEEEEeCC-Ccc--HHHHHHHHHCCCCCcEEEEEEECChhHHHHHHHcCCCEEEeCC
Confidence 3568999998876 443 34455555443 35666653 34467788889999988754
No 452
>PRK05867 short chain dehydrogenase; Provisional
Probab=22.40 E-value=4.1e+02 Score=25.52 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=21.9
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++. .+ -.++++.|.++|++|.++..
T Consensus 10 k~vlVtGas~-gI--G~~ia~~l~~~G~~V~~~~r 41 (253)
T PRK05867 10 KRALITGAST-GI--GKRVALAYVEAGAQVAIAAR 41 (253)
T ss_pred CEEEEECCCc-hH--HHHHHHHHHHCCCEEEEEcC
Confidence 3455554443 22 46788999999999988754
No 453
>PRK11519 tyrosine kinase; Provisional
Probab=22.39 E-value=9.5e+02 Score=27.77 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=29.2
Q ss_pred CeEEEEEec--CCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 122 PLHIVMLIV--GTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~--gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+-|+++++. |+-|--.-...||..|+..|++|.++-.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~ 563 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDC 563 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 456666654 4667778889999999999999999943
No 454
>PRK06194 hypothetical protein; Provisional
Probab=22.39 E-value=3.1e+02 Score=26.97 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=21.0
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
+.++++.++ |-+ -.+++++|.++|++|+++..
T Consensus 7 k~vlVtGas-ggI--G~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 7 KVAVITGAA-SGF--GLAFARIGAALGMKLVLADV 38 (287)
T ss_pred CEEEEeCCc-cHH--HHHHHHHHHHCCCEEEEEeC
Confidence 334444433 333 35688899999999988754
No 455
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=22.34 E-value=87 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=21.2
Q ss_pred ccccEEEEeCChhHHHHHH---H--------------------hCCCEEeecCC
Q 008369 440 SRCLAVVHHGGAGTTAAGL---K--------------------AACPTTIVPFF 470 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL---~--------------------~GvP~vivP~~ 470 (568)
..+|++|-=|| ||++.+. + .++|.|.+|-.
T Consensus 85 ~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 85 EKVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred cCCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 56899998888 4444432 1 26899999974
No 456
>PLN02712 arogenate dehydrogenase
Probab=22.27 E-value=1.4e+02 Score=34.18 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=30.4
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCc
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGL 170 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl 170 (568)
..+|||+|+-.|.-|. .+|+.|++.||+|.++......+.....|+
T Consensus 367 ~~~~kIgIIGlG~mG~-----slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv 412 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQ-----FLAKTMVKQGHTVLAYSRSDYSDEAQKLGV 412 (667)
T ss_pred CCCCEEEEEecCHHHH-----HHHHHHHHCcCEEEEEECChHHHHHHHcCC
Confidence 4679999986554332 678889999999998765433233333444
No 457
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=22.27 E-value=2.2e+02 Score=24.49 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=29.9
Q ss_pred CeEEEEEecCCCCChHHHH---HHHHHHHhCCCeEEEEeCCC
Q 008369 122 PLHIVMLIVGTRGDVQPFV---AIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~l---aLA~~L~~rGH~V~~~t~~~ 160 (568)
+|||++++....|-...++ +|.++-+++||++.+=+...
T Consensus 2 ~mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~qg~ 43 (114)
T PRK10427 2 MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIETQGA 43 (114)
T ss_pred CceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4899998888778776665 56666678899999887654
No 458
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=22.26 E-value=97 Score=23.69 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCeEEEEe
Q 008369 140 VAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 140 laLA~~L~~rGH~V~~~t 157 (568)
+..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 678999999999999994
No 459
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=22.22 E-value=1.4e+02 Score=27.10 Aligned_cols=37 Identities=16% Similarity=0.107 Sum_probs=25.9
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCch
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFK 162 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~ 162 (568)
...+|+++-.|.- ....++.|.+.||+|+++++....
T Consensus 12 ~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~~~~ 48 (157)
T PRK06719 12 HNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPEICK 48 (157)
T ss_pred CCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCccCH
Confidence 3466777655432 367889999999999999754333
No 460
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=22.20 E-value=1.2e+02 Score=30.17 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=26.3
Q ss_pred eEEEEEecC---CCCChHHHHHHHHHHHhCCCeEEEEe
Q 008369 123 LHIVMLIVG---TRGDVQPFVAIGKRLQEDGHRVRLAT 157 (568)
Q Consensus 123 m~Ili~~~g---s~GHv~P~laLA~~L~~rGH~V~~~t 157 (568)
||+.|++.| +.|-=.-.-.||+-|+.+|++|+..-
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K 38 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIK 38 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEE
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeee
Confidence 578888877 55666778899999999999999994
No 461
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=22.19 E-value=6.2e+02 Score=24.08 Aligned_cols=85 Identities=13% Similarity=-0.003 Sum_probs=53.5
Q ss_pred ChhhHHhhhcC----CCcEEEeCCCCCCCChHHHHHHHHHHHHHc-CceEEEEcCCCCCCCCCCCCceEEEcCCCCh-hh
Q 008369 364 PDSLVKWLEDG----EKPIYIGFGSLPVEEPEKMTEIIVKALEIT-GHRGIINKGWGGLGNLAESKDFVYLLDNCPH-DW 437 (568)
Q Consensus 364 ~~~l~~~L~~~----~p~VyVsfGS~~~~~~~~l~~~i~~al~~~-~~~~Iv~~g~~~~~~l~~~~~nv~~~~~vP~-~~ 437 (568)
.+.+.+++.+. +.++||...|. +.++....+.++++.. +..+....-.. -+. .+
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~---~~~~~~~~~~~a~~~l~G~~~~~~~~~~-----------------~~~~~~ 76 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG---DRDEYTARFYAAFESLRGVEVSHLHLFD-----------------TEDPLD 76 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC---CHHHHHHHHHHHHhhccCcEEEEEeccC-----------------cccHHH
Confidence 34566665542 34899988876 4556777789999999 88766432110 122 33
Q ss_pred hhccccEEEEeCCh--------------hHHHHHHHhCCCEEeec
Q 008369 438 LFSRCLAVVHHGGA--------------GTTAAGLKAACPTTIVP 468 (568)
Q Consensus 438 ll~~~~~~I~HGG~--------------gT~~EaL~~GvP~vivP 468 (568)
.+..+|+++--||. ..+.+.+..|+|++.+-
T Consensus 77 ~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 77 ALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred HHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 45778888877772 22344455799988764
No 462
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.18 E-value=3e+02 Score=28.52 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=22.1
Q ss_pred CCCCcEEEeC-C--CcccHHHHHHHcCCCEEEEeccC
Q 008369 228 PFKPDAIIAN-P--PAYGHTHVAESLKVPLHIIFTMP 261 (568)
Q Consensus 228 ~~~pDlVI~d-~--~~~~~~~~A~~lgIP~v~~~t~p 261 (568)
..++|+||+= - ..=.+-.+|..+++|++.+-|++
T Consensus 76 ~~~~d~iiavGGGs~~D~aK~ia~~~~~p~i~VPTt~ 112 (345)
T cd08171 76 VQEADMIFAVGGGKAIDTVKVLADKLGKPVFTFPTIA 112 (345)
T ss_pred hcCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEecCcc
Confidence 3478999972 1 11134556677799999876654
No 463
>PRK05993 short chain dehydrogenase; Provisional
Probab=22.07 E-value=2.1e+02 Score=28.29 Aligned_cols=51 Identities=22% Similarity=0.239 Sum_probs=29.6
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-chhhHhcCCceeecc
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN-FKDFVLGAGLEFFPL 175 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~-~~~~v~~~Gl~f~~i 175 (568)
+++.++++.++ |-+- .++|++|.++|++|.++.... ..+.+...+++++..
T Consensus 3 ~~k~vlItGas-ggiG--~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~~~~~~ 54 (277)
T PRK05993 3 MKRSILITGCS-SGIG--AYCARALQSDGWRVFATCRKEEDVAALEAEGLEAFQL 54 (277)
T ss_pred CCCEEEEeCCC-cHHH--HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCceEEEc
Confidence 34555555443 3222 567899999999998886432 122333445555544
No 464
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=22.05 E-value=83 Score=32.27 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=25.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|||.|+-.|+.| .++|..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 678777777654 47889999999999999863
No 465
>PLN02712 arogenate dehydrogenase
Probab=22.00 E-value=1.4e+02 Score=34.18 Aligned_cols=47 Identities=21% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCce
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLE 171 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~ 171 (568)
.++|+|+|+-.|--| - .+|+.|.+.||+|+.+............|+.
T Consensus 50 ~~~~kIgIIG~G~mG---~--slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~ 96 (667)
T PLN02712 50 TTQLKIAIIGFGNYG---Q--FLAKTLISQGHTVLAHSRSDHSLAARSLGVS 96 (667)
T ss_pred CCCCEEEEEccCHHH---H--HHHHHHHHCCCEEEEEeCCHHHHHHHHcCCE
Confidence 456899998654333 2 5788899999999887654333333344443
No 466
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=21.97 E-value=4e+02 Score=27.64 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=14.5
Q ss_pred ccHHHHHHHcCCCEEEEec
Q 008369 241 YGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 241 ~~~~~~A~~lgIP~v~~~t 259 (568)
+....+|+.+|||++....
T Consensus 249 ~~lA~~Ak~~~vPfyV~a~ 267 (331)
T TIGR00512 249 YQLAVLAKHHGVPFYVAAP 267 (331)
T ss_pred HHHHHHHHHhCCCEEEecc
Confidence 3455789999999987654
No 467
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=21.90 E-value=1.1e+02 Score=30.03 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=29.4
Q ss_pred EEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 008369 127 MLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHAN 160 (568)
Q Consensus 127 i~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~ 160 (568)
|...|+.|--.-+..||++|.++|.+|.+-|+-.
T Consensus 2 i~~vG~gGKTtl~~~l~~~~~~~g~~v~~TTTT~ 35 (232)
T TIGR03172 2 IAFVGAGGKTSTMFWLAAEYRKEGYRVLVTTTTR 35 (232)
T ss_pred EEEEcCCcHHHHHHHHHHHHHHCCCeEEEECCcc
Confidence 4556778999999999999999999999997654
No 468
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=21.88 E-value=2.7e+02 Score=27.79 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=13.2
Q ss_pred cccHHHHHHHcCCCEEEEec
Q 008369 240 AYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 240 ~~~~~~~A~~lgIP~v~~~t 259 (568)
+.....+|+.+++|++.+..
T Consensus 199 t~~~a~~Ak~~~vPv~v~~~ 218 (282)
T PF01008_consen 199 TLQLALAAKEFNVPVYVLAE 218 (282)
T ss_dssp HHHHHHHHHHTT-EEEEE--
T ss_pred HHHHHHHHHhhCCCEEEEcc
Confidence 34455789999999988754
No 469
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=21.78 E-value=4.2e+02 Score=27.40 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=14.3
Q ss_pred cHHHHHHHcCCCEEEEec
Q 008369 242 GHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 242 ~~~~~A~~lgIP~v~~~t 259 (568)
....+|+.+|||++...+
T Consensus 240 ~lAl~Ak~~~VPfyV~a~ 257 (329)
T PRK06371 240 EKAVLAKVNGIPFYVAAP 257 (329)
T ss_pred HHHHHHHHcCCCEEEecc
Confidence 345789999999988754
No 470
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=21.71 E-value=2.7e+02 Score=23.13 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=30.2
Q ss_pred eEEEEEec--CCCCC-hHHHHHHHHHHHhCC---CeEEEEeCCCchhhHhc
Q 008369 123 LHIVMLIV--GTRGD-VQPFVAIGKRLQEDG---HRVRLATHANFKDFVLG 167 (568)
Q Consensus 123 m~Ili~~~--gs~GH-v~P~laLA~~L~~rG---H~V~~~t~~~~~~~v~~ 167 (568)
|+|+++.. +.... ..-.+.++..+...| |+|.++........+.+
T Consensus 1 k~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~~~~ 51 (122)
T PF02635_consen 1 KKVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKLALK 51 (122)
T ss_dssp EEEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGGGBT
T ss_pred CEEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHHHHh
Confidence 56766654 22223 567788888888999 99999987765555544
No 471
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=21.70 E-value=66 Score=26.39 Aligned_cols=35 Identities=26% Similarity=0.411 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeecc
Q 008369 139 FVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPL 175 (568)
Q Consensus 139 ~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i 175 (568)
++.+|+.|.+.|+++ ++++.-.++++++|++...+
T Consensus 2 ~~~~a~~l~~lG~~i--~AT~gTa~~L~~~Gi~~~~v 36 (95)
T PF02142_consen 2 IVPLAKRLAELGFEI--YATEGTAKFLKEHGIEVTEV 36 (95)
T ss_dssp HHHHHHHHHHTTSEE--EEEHHHHHHHHHTT--EEEC
T ss_pred HHHHHHHHHHCCCEE--EEChHHHHHHHHcCCCceee
Confidence 578999999999764 44445567889999995554
No 472
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=21.54 E-value=2.9e+02 Score=26.36 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=25.8
Q ss_pred CeEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeC
Q 008369 122 PLHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATH 158 (568)
Q Consensus 122 ~m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~ 158 (568)
.-+++++..|+ =+.|++++++++.+. +++|+++-.
T Consensus 102 ~~~~lliagG~--Gitp~~s~~~~~~~~~~~~~v~l~~~ 138 (231)
T cd06191 102 PGRYLLVAAGS--GITPLMAMIRATLQTAPESDFTLIHS 138 (231)
T ss_pred CCcEEEEecCc--cHhHHHHHHHHHHhcCCCCCEEEEEe
Confidence 35777777655 377999999999765 678877743
No 473
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=21.50 E-value=5.8e+02 Score=24.50 Aligned_cols=117 Identities=16% Similarity=0.167 Sum_probs=55.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCCCC---
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPSGP--- 197 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~~~--- 197 (568)
.++.+.|.|... |. -.+++..+++||+|.+--+=.-... ...|-.....+-+.+++...+.......|...
T Consensus 21 ~pvT~ai~P~~~--~~---~~~a~~a~~~G~EvllhlPMep~~~-~~~gp~~L~~~~~~~~i~~~l~~al~~vp~a~Gvn 94 (213)
T PF04748_consen 21 FPVTFAILPYAP--YS---REWAERARAAGHEVLLHLPMEPKGY-KDPGPGALLTGMSEEEIRKRLEAALARVPGAVGVN 94 (213)
T ss_dssp TTCEEEEETTST--TH---HHHHHHHHHCT-EEEEEEEE--TTT-T---TT-B-TTS-HHHHHHHHHHHHCCSTT-SEEE
T ss_pred CCeEEEECCCCC--Ch---HHHHHHHHHcCCEEEEeCCCCCCCC-CCcccccccCCCCHHHHHHHHHHHHHHCCCcEEEe
Confidence 345566655543 33 4566666889999999876222222 35555555555566666554444433344221
Q ss_pred ----CChhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCcEEEeCCCc---ccHHHHHHHcCCCEEEE
Q 008369 198 ----SEIPIQRNQLKEIIYSLLPACKDPDPDTMVPFKPDAIIANPPA---YGHTHVAESLKVPLHII 257 (568)
Q Consensus 198 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlVI~d~~~---~~~~~~A~~lgIP~v~~ 257 (568)
+.+......+..+++.+. +-.+.+.|... ..+..+|+.+|+|+..-
T Consensus 95 NhmGS~~T~~~~~m~~vl~~l~--------------~~gl~FvDS~T~~~s~a~~~A~~~gvp~~~r 147 (213)
T PF04748_consen 95 NHMGSRFTSDREAMRWVLEVLK--------------ERGLFFVDSRTTPRSVAPQVAKELGVPAARR 147 (213)
T ss_dssp EEE-CCHHC-HHHHHHHHHHHH--------------HTT-EEEE-S--TT-SHHHHHHHCT--EEE-
T ss_pred cCCCccccCCHHHHHHHHHHHH--------------HcCCEEEeCCCCcccHHHHHHHHcCCCEEee
Confidence 222222334444444332 12566776443 23678999999999764
No 474
>PRK07478 short chain dehydrogenase; Provisional
Probab=21.47 E-value=4.7e+02 Score=25.13 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|.++++.++ |.+- .+++++|.++|++|.++..
T Consensus 7 k~~lItGas-~giG--~~ia~~l~~~G~~v~~~~r 38 (254)
T PRK07478 7 KVAIITGAS-SGIG--RAAAKLFAREGAKVVVGAR 38 (254)
T ss_pred CEEEEeCCC-ChHH--HHHHHHHHHCCCEEEEEeC
Confidence 445555444 4333 4578899999999988864
No 475
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=21.46 E-value=4.3e+02 Score=27.68 Aligned_cols=17 Identities=12% Similarity=0.217 Sum_probs=13.8
Q ss_pred cHHHHHHHcCCCEEEEe
Q 008369 242 GHTHVAESLKVPLHIIF 258 (568)
Q Consensus 242 ~~~~~A~~lgIP~v~~~ 258 (568)
....+|+.+|||++...
T Consensus 263 ~lA~~Ak~~~vPfyV~A 279 (356)
T PRK08334 263 TLAVLAKEHGIPFFTVA 279 (356)
T ss_pred HHHHHHHHhCCCEEEEc
Confidence 34578999999998865
No 476
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=21.41 E-value=4.4e+02 Score=25.74 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=22.4
Q ss_pred EEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|+++++.++.| --.+++++|.++|++|.++..
T Consensus 11 k~vlVtGas~g---iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 11 KVAVITGGGGV---LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 45555555442 237888999999999988764
No 477
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.33 E-value=1.5e+02 Score=31.00 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=33.5
Q ss_pred eEEEcCCCChh---hhhccccEEEEeCChhHHHHHHHhCCCEEe
Q 008369 426 FVYLLDNCPHD---WLFSRCLAVVHHGGAGTTAAGLKAACPTTI 466 (568)
Q Consensus 426 nv~~~~~vP~~---~ll~~~~~~I~HGG~gT~~EaL~~GvP~vi 466 (568)
.+.++++++|+ .||-.||+=+-.|= -|..-|..+|+|.|=
T Consensus 243 ~~~~LPf~~Q~~yD~LLW~cD~NfVRGE-DSFVRAqWAgkPfvW 285 (371)
T TIGR03837 243 TVAVLPFVPQDDYDRLLWACDLNFVRGE-DSFVRAQWAGKPFVW 285 (371)
T ss_pred EEEEcCCCChhhHHHHHHhChhcEeech-hHHHHHHHcCCCcee
Confidence 47788999874 56899999777766 799999999999984
No 478
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=21.28 E-value=99 Score=30.09 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=19.8
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 135 DVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 135 Hv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|+.-|-..|.+|+++||+|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 6778999999999999999999765
No 479
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=21.28 E-value=2.3e+02 Score=27.07 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC---CCeEEEEe
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED---GHRVRLAT 157 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r---GH~V~~~t 157 (568)
-++++++.|+ -+.|++++.+++.+. +.+|+++-
T Consensus 105 ~~~vliagGt--GiaP~~~~l~~~~~~~~~~~~i~l~~ 140 (234)
T cd06183 105 KHIGMIAGGT--GITPMLQLIRAILKDPEDKTKISLLY 140 (234)
T ss_pred cEEEEEcCCc--chhHHHHHHHHHHhCcCcCcEEEEEE
Confidence 4677766553 588999999999875 56777774
No 480
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=21.20 E-value=1.1e+02 Score=32.76 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|||.|+-.|.-| .++|..|+++||+|+++..
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 678887666555 6788899999999998854
No 481
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=21.16 E-value=5.9e+02 Score=26.68 Aligned_cols=89 Identities=13% Similarity=0.059 Sum_probs=61.6
Q ss_pred eEEEcCCCChhhhh-ccccEEEEeC---Chh-HHHHHHHhCCCEEeecCCCChhHHHHHHHHcCCCCCCCCCCCCCHHHH
Q 008369 426 FVYLLDNCPHDWLF-SRCLAVVHHG---GAG-TTAAGLKAACPTTIVPFFGDQPFWGERVHARGLGPAPIPVEEFSLDKL 500 (568)
Q Consensus 426 nv~~~~~vP~~~ll-~~~~~~I~HG---G~g-T~~EaL~~GvP~vivP~~~DQ~~na~~v~~~G~G~~~i~~~~lt~e~L 500 (568)
...+.+-.+..+.| .++|+||+|= |.| ...|+|+.|=|.| .|+..+.+ +|- - +.+.+..+=
T Consensus 254 kasfegR~~~p~fla~~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GY-Y--Y~~fD~~~G 319 (364)
T PF10933_consen 254 KASFEGRFDFPDFLAQHTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGY-Y--YPDFDAFEG 319 (364)
T ss_pred eeEEeeecChHHHHHhCCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCc-C--CCCccHHHH
Confidence 34556666665555 8899999995 333 5689999999998 46777765 665 2 346666666
Q ss_pred HHHHHHhc---C---HHHHHHHHHHHHHhhcCCc
Q 008369 501 VDAIRFML---D---PKVKEHAVELAKAMENEDG 528 (568)
Q Consensus 501 ~~aI~~lL---d---~~~r~~a~~la~~~~~~~g 528 (568)
++++.+++ | ++|+++|+++-..+.-.+-
T Consensus 320 ~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~n~ 353 (364)
T PF10933_consen 320 ARQLLRAIREHDADLDAYRARARRLLDRLSPENP 353 (364)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhhCCCCH
Confidence 66666555 2 6799999988777665443
No 482
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=21.16 E-value=1e+02 Score=33.78 Aligned_cols=36 Identities=25% Similarity=0.291 Sum_probs=26.2
Q ss_pred eEEEEEec------CCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIV------GTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~------gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
|||++++. -+.|=-.-+-+|.++|+++||+|+++.+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP 42 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLP 42 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcC
Confidence 56665432 2445555678899999999999999965
No 483
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=21.11 E-value=97 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=25.8
Q ss_pred EEEEE-ecCCCCChHHHHHHHHHHHhC-CCeEEE
Q 008369 124 HIVML-IVGTRGDVQPFVAIGKRLQED-GHRVRL 155 (568)
Q Consensus 124 ~Ili~-~~gs~GHv~P~laLA~~L~~r-GH~V~~ 155 (568)
||+|+ +..+.-|..-.++||..|++. |.+|.+
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 45443 556778999999999999999 999884
No 484
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=21.05 E-value=2e+02 Score=27.11 Aligned_cols=34 Identities=24% Similarity=0.426 Sum_probs=25.8
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhC--CCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQED--GHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~r--GH~V~~~t~ 158 (568)
-+++++..|+ -+.|++++++.+.+. +.+|+++-.
T Consensus 98 ~~~v~ia~G~--Giap~~~~l~~~~~~~~~~~v~l~~~ 133 (223)
T cd00322 98 GPVVLIAGGI--GITPFRSMLRHLAADKPGGEITLLYG 133 (223)
T ss_pred CcEEEEecCC--chhHHHHHHHHHHhhCCCCcEEEEEe
Confidence 4677777655 589999999999876 677877743
No 485
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=20.92 E-value=2.9e+02 Score=26.82 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCcEEEe-CCCc-ccHHHHHHHcCCCEEEEeccCCCC
Q 008369 230 KPDAIIA-NPPA-YGHTHVAESLKVPLHIIFTMPWTP 264 (568)
Q Consensus 230 ~pDlVI~-d~~~-~~~~~~A~~lgIP~v~~~t~p~~~ 264 (568)
.||+||. |+.. ..++.=|..+|||++.+.-+...+
T Consensus 155 ~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~~p 191 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNCDP 191 (225)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCCCC
Confidence 6899866 6543 345677999999999887655443
No 486
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.90 E-value=3.2e+02 Score=30.13 Aligned_cols=29 Identities=21% Similarity=0.486 Sum_probs=22.8
Q ss_pred CCCCCcEEEeCCCcccHHHHHHHcCCCEEEEe
Q 008369 227 VPFKPDAIIANPPAYGHTHVAESLKVPLHIIF 258 (568)
Q Consensus 227 ~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~ 258 (568)
+..+||+||.+.. ..++|+++|||++.+.
T Consensus 361 ~~~~pdliiG~~~---er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 361 AALEPELVLGTQM---ERHSAKRLDIPCGVIS 389 (511)
T ss_pred HhcCCCEEEEChH---HHHHHHHcCCCEEEec
Confidence 3457999999863 4678999999997654
No 487
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=20.86 E-value=2e+02 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=28.4
Q ss_pred EEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 126 VMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 126 li~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
+++..|..|+-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 5677787778888999999999999999888443
No 488
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=20.85 E-value=1e+03 Score=27.29 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=27.4
Q ss_pred EEEEEecC-CCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 124 HIVMLIVG-TRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 124 ~Ili~~~g-s~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
.|.|.+.+ .-|=-.-.+.|++.|+++|.+|.++=+
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 35555444 457778899999999999999999864
No 489
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=20.84 E-value=2e+02 Score=28.83 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=27.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
-+++++..|+ =+.|++.++++|.++|++|+++-.
T Consensus 99 ~~~llIaGGi--GiaPl~~l~~~l~~~~~~v~l~~g 132 (281)
T PRK06222 99 GTVVCVGGGV--GIAPVYPIAKALKEAGNKVITIIG 132 (281)
T ss_pred CeEEEEeCcC--cHHHHHHHHHHHHHCCCeEEEEEe
Confidence 3677777655 489999999999999999988743
No 490
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=20.82 E-value=6.5e+02 Score=23.01 Aligned_cols=28 Identities=39% Similarity=0.470 Sum_probs=21.7
Q ss_pred CCcEEEeCCCccc---HHHHHHHcCCCEEEE
Q 008369 230 KPDAIIANPPAYG---HTHVAESLKVPLHII 257 (568)
Q Consensus 230 ~pDlVI~d~~~~~---~~~~A~~lgIP~v~~ 257 (568)
+||+|+......+ +..+|.+||.|++.-
T Consensus 91 ~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsd 121 (181)
T cd01985 91 KPDLILAGATSIGKQLAPRVAALLGVPQISD 121 (181)
T ss_pred CCCEEEECCcccccCHHHHHHHHhCCCccee
Confidence 6899998654443 678899999999764
No 491
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=20.79 E-value=87 Score=31.91 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|+|||.|+-.|..| .++|..|+++||+|+++...
T Consensus 1 ~~~~V~VIG~G~mG-----~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 1 PMGSVAIIGAGLIG-----RAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred CCcEEEEECccHHH-----HHHHHHHHHCCCeeEEEeCC
Confidence 34688877655433 46888999999999999654
No 492
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=20.77 E-value=5.3e+02 Score=27.00 Aligned_cols=26 Identities=38% Similarity=0.604 Sum_probs=20.5
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.+||++|.+... ...|+++|||++.+
T Consensus 347 ~~pdl~ig~~~~---~~~~~~~~ip~~~~ 372 (399)
T cd00316 347 LKPDLIIGGSKG---RYIAKKLGIPLVRI 372 (399)
T ss_pred cCCCEEEECCcH---HHHHHHhCCCEEEc
Confidence 379999998643 56889999999753
No 493
>PRK10490 sensor protein KdpD; Provisional
Probab=20.72 E-value=1.6e+02 Score=35.11 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=34.1
Q ss_pred CCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 120 IPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 120 ~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
.-++||.+-..++-|-.+-|+.-|++|+++|++|.+-
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g 58 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVG 58 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEE
Confidence 4569999999999999999999999999999999876
No 494
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=20.68 E-value=5.1e+02 Score=27.84 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=30.4
Q ss_pred EEEEEecCCCCChHHHHHHHHHHH--hCCCeEEEEeCCCch
Q 008369 124 HIVMLIVGTRGDVQPFVAIGKRLQ--EDGHRVRLATHANFK 162 (568)
Q Consensus 124 ~Ili~~~gs~GHv~P~laLA~~L~--~rGH~V~~~t~~~~~ 162 (568)
.|+|+..++-|=-.-...||.+++ ..|++|.+++.+.++
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 455555557788888889999887 568999999987754
No 495
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=20.64 E-value=8e+02 Score=27.12 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCCcEEEeCCCcccHHHHHHHcCCCEEEE
Q 008369 229 FKPDAIIANPPAYGHTHVAESLKVPLHII 257 (568)
Q Consensus 229 ~~pDlVI~d~~~~~~~~~A~~lgIP~v~~ 257 (568)
.+||++|++... ..+|+++|||++-.
T Consensus 397 ~~~Dllig~s~~---~~~A~k~gIP~ld~ 422 (513)
T TIGR01861 397 LKPDIILTGKRP---GEVSKKMRVPYLNA 422 (513)
T ss_pred cCCCEEEecCcc---chhHhhcCCCEEEc
Confidence 379999998654 36899999999764
No 496
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=20.59 E-value=89 Score=30.01 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 008369 123 LHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATHA 159 (568)
Q Consensus 123 m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~~ 159 (568)
|||.|+- +.|.+- .++|+.|.+.||+|+++...
T Consensus 1 MkI~IIG--G~G~mG--~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLG--GTGDQG--KGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEc--CCCHHH--HHHHHHHHhCCCEEEEEEcC
Confidence 6777753 223322 37888999999999988643
No 497
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.54 E-value=4.6e+02 Score=24.11 Aligned_cols=122 Identities=14% Similarity=0.139 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHH-HhCCCeEEEEeCCCchhhHhcCCceeeccCCChHHHHHHHhhcCCCCCC-----CCCChhHHHHHH
Q 008369 134 GDVQPFVAIGKRL-QEDGHRVRLATHANFKDFVLGAGLEFFPLGGDPKILAGYMVKNKGFLPS-----GPSEIPIQRNQL 207 (568)
Q Consensus 134 GHv~P~laLA~~L-~~rGH~V~~~t~~~~~~~v~~~Gl~f~~i~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~ 207 (568)
+.+.-.+..|+.| .+.|.+|.+.......-.-+..+++.+.++....++...+.+-....+. ....+ .....+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~-~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGGTAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNII-PGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHHHHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-S-CCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCHHHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEeccccc-HHHHHH
Confidence 5677789999999 8899999888765443333344788888876655554433322111000 00000 001222
Q ss_pred HHHHHHHhhhc-CCCCC------CCCCCCCCcEEEeCCCcccHHHHHHHcCCCEEEEec
Q 008369 208 KEIIYSLLPAC-KDPDP------DTMVPFKPDAIIANPPAYGHTHVAESLKVPLHIIFT 259 (568)
Q Consensus 208 ~~~~~~~~~~~-~~~~~------~~~~~~~pDlVI~d~~~~~~~~~A~~lgIP~v~~~t 259 (568)
.+++..-.... ..... ...+....|+||.+... ..+|+.+|+|++.+.+
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~~G~~viVGg~~~---~~~A~~~gl~~v~i~s 151 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKAEGVDVIVGGGVV---CRLARKLGLPGVLIES 151 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHHTT--EEEESHHH---HHHHHHTTSEEEESS-
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHHcCCcEEECCHHH---HHHHHHcCCcEEEEEe
Confidence 22221100000 00000 00112368999998643 5789999999988543
No 498
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=20.38 E-value=2.2e+02 Score=27.67 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=24.1
Q ss_pred CCCCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 008369 119 GIPPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLATH 158 (568)
Q Consensus 119 ~~~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~t~ 158 (568)
...+|+|+|+ |+.|. --..+++.|.++||+|+.++.
T Consensus 14 ~~~~~~ilIt--GasG~--iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 14 NVKTKTVFVA--GATGR--TGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred cccCCeEEEE--CCCcH--HHHHHHHHHHhCCCEEEEEec
Confidence 3456777664 33332 235678888889999988764
No 499
>PRK13604 luxD acyl transferase; Provisional
Probab=20.31 E-value=1.9e+02 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=29.8
Q ss_pred CCeEEEEEecCCCCChHHHHHHHHHHHhCCCeEEEE
Q 008369 121 PPLHIVMLIVGTRGDVQPFVAIGKRLQEDGHRVRLA 156 (568)
Q Consensus 121 ~~m~Ili~~~gs~GHv~P~laLA~~L~~rGH~V~~~ 156 (568)
.+-+.+|+..|..++-.-+..+|+.|.++|..|.-+
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 345677888888887767999999999999998776
No 500
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=20.31 E-value=45 Score=30.96 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=20.7
Q ss_pred ccccEEEEeCChhHHHHHHHhCCCEEeecCCC
Q 008369 440 SRCLAVVHHGGAGTTAAGLKAACPTTIVPFFG 471 (568)
Q Consensus 440 ~~~~~~I~HGG~gT~~EaL~~GvP~vivP~~~ 471 (568)
..+|++|++||...+..... ++|+|-+|..+
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 67899999999877777766 89999888653
Done!