BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008371
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AZP|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZP|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
pdb|3AZQ|A Chain A, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
pdb|3AZQ|B Chain B, Crystal Structure Of Puromycin Hydrolase S511a Mutant
Complexed With Pgg
Length = 662
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 326 VLGKFETVDAYYRHSSSANFVRNVSVPLLCISTLDDPVCTRE 367
++G FE YR + V VP L + L+DPVC E
Sbjct: 558 LIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3AZO|A Chain A, Crystal Structure Of Puromycin Hydrolase
pdb|3AZO|B Chain B, Crystal Structure Of Puromycin Hydrolase
Length = 662
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 326 VLGKFETVDAYYRHSSSANFVRNVSVPLLCISTLDDPVCTRE 367
++G FE YR + V VP L + L+DPVC E
Sbjct: 558 LIGSFEEFPERYRDRAPLTRADRVRVPFLLLQGLEDPVCPPE 599
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 363 VCTREAIP-WDECRANEKIILATTRHGGHLAFYEGITAKSLWWVRAVNVFLDALNTSPYV 421
+C R P DE + +L+T+ GG + + L+W D + ++
Sbjct: 44 LCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHF----LYWGEVSRSLEDCVECKMHI 99
Query: 422 NRSTKVQESSSTAPIESSVDQGPYINVAEDGMVAAVGTMASDKVVEDTPSEPVTQIKKDE 481
T+ + + P S+ Q PYI A AA +++K++ + + ++
Sbjct: 100 VEQTEFIDDQTFQPHRSTALQ-PYIKRA-----AATKLASAEKLMYFCTDQLGLEQDFEQ 153
Query: 482 DTNLDTDSMTEETLPGIDGTQSSNQNVDDLIVPIRRRMDQLSRHSR-ISIWLLVC 535
D + + L GID ++ N+N DD + + +QL++ + I + L C
Sbjct: 154 KQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKC 208
>pdb|2WPN|A Chain A, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 317
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 231 AVGTSIGANILVKYLGENGVNTPLV 255
A G+ GA + K+LG+NG+ TP+V
Sbjct: 164 AEGSETGATAVSKFLGDNGIKTPVV 188
>pdb|1HKH|A Chain A, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HKH|B Chain B, Unligated Gamma Lactamase From An Aureobacterium Species
pdb|1HL7|A Chain A, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
pdb|1HL7|B Chain B, Gamma Lactamase From An Aureobacterium Species In Complex
With 3a,4,7,7a-Tetrahydro-Benzo [1,3] Dioxol-2-One
Length = 279
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 178 KMAGHGWNVVVSNHRGLGGISLTSDCFYNGGWTEDLRRVIDYLHCQYPEVPLYAVGTSIG 237
++ G+ V+ + RG GG S + + + DL V++ L + +V L VG S+G
Sbjct: 45 ELLAQGYRVITYDRRGFGGSSKVNTGYDYDTFAADLHTVLETLDLR--DVVL--VGFSMG 100
Query: 238 ANILVKYLGENG 249
L +Y+ G
Sbjct: 101 TGELARYVARYG 112
>pdb|3AI7|A Chain A, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|B Chain B, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|C Chain C, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|D Chain D, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|E Chain E, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|F Chain F, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|G Chain G, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
pdb|3AI7|H Chain H, Crystal Structure Of Bifidobacterium Longum
Phosphoketolase
Length = 831
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 172 IKHLAFKMAGHGWNVVVSNHRGLGGISLTSDCFYNGGWTEDLRRV 216
I H+ +A HG N V+ G GG + TS + +G +TE ++
Sbjct: 75 IGHINRFIADHGQNTVIIMGPGHGGPAGTSQSYLDGTYTETFPKI 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,212,355
Number of Sequences: 62578
Number of extensions: 665888
Number of successful extensions: 1293
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1289
Number of HSP's gapped (non-prelim): 7
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)