BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 008373
         (568 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L0D|A Chain A, Solution Nmr Structure Of Putative Cell Surface Protein
           Ma_4588 (272- 376 Domain) From Methanosarcina
           Acetivorans, Northeast Structural Genomics Consortium
           Target Mvr254a
          Length = 114

 Score = 32.3 bits (72), Expect = 0.76,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%)

Query: 476 VTDASTVASLEEYDHQLIDIPETAIGAGNSTGAEVELQPRNISNSPASVPNETSSRVGT 534
           V D  TV SLE  +   +D   T  G  NS    V + P N  N      N  ++ VGT
Sbjct: 48  VVDTQTVTSLESENSTNVDFHWTLDGTANSYTLTVNVDPENAVNEGNESNNTLTALVGT 106


>pdb|3AW8|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
           Ribonucleotide Synthetase From Thermus Thermophilus Hb8
 pdb|3AW8|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
           Ribonucleotide Synthetase From Thermus Thermophilus Hb8
          Length = 369

 Score = 28.9 bits (63), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 11/81 (13%)

Query: 390 WWQFGYNSCFIHNHLLVYLRLILGFAGQFLCSYSTLP--LYALVTQMGTNYKAALIPRRI 447
           W   G  +    NHL   L L LG         ST P    A+V  +G     A + +  
Sbjct: 269 WTIEGAETSQFENHLRAVLGLPLG---------STAPRGQSAMVNLIGEKPPFAEVLKVE 319

Query: 448 RETIHGWGKAARRKRRLGHFT 468
              +H +GKA R  R++GH T
Sbjct: 320 GAHLHWYGKAVRPGRKVGHIT 340


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.135    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,767,068
Number of Sequences: 62578
Number of extensions: 612326
Number of successful extensions: 1334
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1333
Number of HSP's gapped (non-prelim): 2
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)