Query 008373
Match_columns 568
No_of_seqs 166 out of 255
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 23:00:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008373.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008373hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 3E-182 7E-187 1438.8 36.1 437 14-466 1-443 (478)
2 PRK11677 hypothetical protein; 57.7 17 0.00036 34.6 4.6 44 23-70 2-45 (134)
3 TIGR02976 phageshock_pspB phag 49.9 50 0.0011 28.6 5.8 28 23-50 3-30 (75)
4 COG1033 Predicted exporters of 47.7 37 0.0008 40.3 6.2 56 27-82 251-317 (727)
5 PF06305 DUF1049: Protein of u 47.0 53 0.0011 26.4 5.3 47 24-70 18-64 (68)
6 PF07219 HemY_N: HemY protein 46.4 30 0.00065 30.8 4.2 46 20-65 13-65 (108)
7 PF01578 Cytochrom_C_asm: Cyto 37.4 1.1E+02 0.0023 29.9 6.8 29 58-86 116-144 (214)
8 PF15468 DUF4636: Domain of un 31.3 24 0.00053 36.3 1.3 29 273-304 25-53 (243)
9 PF11044 TMEMspv1-c74-12: Plec 29.1 93 0.002 24.9 3.8 28 22-49 2-34 (49)
10 PF12801 Fer4_5: 4Fe-4S bindin 27.7 1.1E+02 0.0024 23.1 4.1 24 23-46 2-25 (48)
11 PF12129 Phtf-FEM1B_bdg: Male 26.7 1.5E+02 0.0032 29.3 5.6 20 316-335 129-148 (159)
12 COG3114 CcmD Heme exporter pro 26.0 1.3E+02 0.0029 25.8 4.5 38 303-340 9-55 (67)
13 TIGR00540 hemY_coli hemY prote 25.2 87 0.0019 33.6 4.2 38 19-56 37-81 (409)
14 PHA03105 EEV glycoprotein; Pro 25.2 83 0.0018 31.2 3.6 33 26-58 9-41 (188)
15 PF12273 RCR: Chitin synthesis 24.2 62 0.0013 29.8 2.5 27 24-59 5-31 (130)
16 KOG1899 LAR transmembrane tyro 23.6 1.4E+02 0.0031 35.2 5.6 97 428-536 281-377 (861)
17 PRK10747 putative protoheme IX 23.1 93 0.002 33.3 4.0 38 19-56 37-81 (398)
18 PF15050 SCIMP: SCIMP protein 20.4 1.5E+02 0.0033 28.2 4.2 33 23-57 8-40 (133)
19 PF05879 RHD3: Root hair defec 20.3 1.2E+02 0.0025 36.2 4.3 34 292-329 649-686 (742)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=3.1e-182 Score=1438.80 Aligned_cols=437 Identities=53% Similarity=0.973 Sum_probs=414.8
Q ss_pred cccCccCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 008373 14 EMRSLALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEMMLLGFISLFLTATSSSISNICIP 93 (568)
Q Consensus 14 ~~rsLe~TPTWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp 93 (568)
|+|+||+||||+||+||+|||++|+++||+||+|||||+|++||+|++||||||||||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCccccCCCCccchhhhcCcccchhhhcccCCccchhhhcc---cccccCC-CCcccccccccchhhHHHHHHHHH
Q 008373 94 SKFYDSTFAPCTRSEIDEEMENNSSEGRKLMGLLFPHRYRRVLNE---LNKNTCK-EGYEPFVSYEGLEQLHRFIFVMAV 169 (568)
Q Consensus 94 ~s~~~~~mlPC~~~~~~~~~~~~~~~~~~~~~s~~~~~~RR~La~---~~~~~C~-~GkvPlvS~egLHQLHIFIFVLAV 169 (568)
++ ++++|+||+..+..++.++ ....||+|+. ++.++|+ ||||||+|+|||||||||||||||
T Consensus 81 ~~-~~~~~lPC~~~~~~~~~~~-------------~~~~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVLAV 146 (478)
T PF03094_consen 81 SS-YASTMLPCKPPEESSKEGS-------------SHNRRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVLAV 146 (478)
T ss_pred hh-HHhcccCCCCccccccccc-------------chhhhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHHHH
Confidence 99 5779999985443221110 1256777762 4677996 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHhhccccccccccceeeeecccccccccccCCCCCChhHHHHHHHHHhhccccc
Q 008373 170 THISYSCLTMLLAIVKIHSWRVWEEEAHMDRHDSLTEITRELTIRRQTTFVRYHTSNPLSRNKLLIWVTCFFRQFGRSVV 249 (568)
Q Consensus 170 ~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~~~~~r~~~~rqttFvr~h~~~~ws~~~~l~Wi~cFfrQF~~SV~ 249 (568)
+||+|||+||+||++|||+||+||+|+++++|+ ..+||+|++++||++|+|+|+ ++|++++++.|++|||||||+||+
T Consensus 147 ~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~-~~~d~~r~~~~~qt~F~r~h~-~~w~~~~~~~wi~~FfrQF~~SV~ 224 (478)
T PF03094_consen 147 VHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQ-FSNDPRRFRLTRQTTFVRRHT-SFWSKSPVLSWIVCFFRQFYGSVT 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cccCcceeeeecccHHHHhhc-CCcccChhHHhHHHHHHHhhcccc
Confidence 999999999999999999999999999999888 456799999999999999999 789999999999999999999999
Q ss_pred hhhHHHHHHhhhhhcCCC-CCCChHHHHHHHHHHhcccccccchhHHHHHHHHHHhccCCcchhHHHhhhhHHHHHHhhh
Q 008373 250 RADYLTLRKGFIMNHNLS-PKYDFHSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLFNVKGSNLYFWIAIIPVTLVLLVGS 328 (568)
Q Consensus 250 ksDYltLR~GFI~~H~~~-~kFDFhkYi~RsLEdDFk~VVGIS~~LW~fvviFlLlNv~Gw~~yfWlsfiPlillLlVGt 328 (568)
|+||+|||+|||++|+++ ++|||||||+|+||||||+||||||+||+|||+|+|+|++|||+|||++|||++++|+|||
T Consensus 225 k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~VGt 304 (478)
T PF03094_consen 225 KSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLVGT 304 (478)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHHHH
Confidence 999999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhHhhccccccccc-ccCcCCCcccccchhHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCcccccccceee
Q 008373 329 KLQHVIATLALENAGITGYFAGA-KLKPRDELFWFNKPELMLSLIHFILFQNAFELASFFWFWWQFGYNSCFIHNHLLVY 407 (568)
Q Consensus 329 KLq~IIt~LAlei~e~~~~~~g~-~vkPsD~lFWF~rP~llL~LIHfiLFQNAFElAfF~W~~~~fG~~SCf~~~~~~ii 407 (568)
|||+||++||+|++|++++++|. +|||+|++|||+||+|||+||||||||||||||||+|+||+||++||||++.++++
T Consensus 305 KLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~~i 384 (478)
T PF03094_consen 305 KLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEYII 384 (478)
T ss_pred HHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCcccee
Confidence 99999999999999999999995 79999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeecccccccccccchhhHHHHhhcccccccccchhHHHHHHhHHHHHhhhhccCC
Q 008373 408 LRLILGFAGQFLCSYSTLPLYALVTQMGTNYKAALIPRRIRETIHGWGKAARRKRRLGH 466 (568)
Q Consensus 408 ~Rl~~Gv~vQ~lCSY~TLPLYALVTQMGS~~K~~if~e~v~~~l~~W~~~akkk~~~~~ 466 (568)
+|+++|+++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+++++
T Consensus 385 ~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~ 443 (478)
T PF03094_consen 385 IRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKK 443 (478)
T ss_pred eehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999987765
No 2
>PRK11677 hypothetical protein; Provisional
Probab=57.66 E-value=17 Score=34.58 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=28.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCchHHHHHHHHHHHH
Q 008373 23 TWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEM 70 (568)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeEL 70 (568)
+|..|++++|+. +++=.++.+++..= .++++.|.+-||+.|.||
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~-~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRK-LRQQQALQYELEKNKAEL 45 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccch-hhHHHHHHHHHHHHHHHH
Confidence 488888666543 33444455544311 135678999999999998
No 3
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=49.93 E-value=50 Score=28.58 Aligned_cols=28 Identities=21% Similarity=0.200 Sum_probs=23.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhH
Q 008373 23 TWSVATVLTVFVVVSLIVERSIHHLSNW 50 (568)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~LH~Lgk~ 50 (568)
.|.+++-..+|+++-..++-.+||..||
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~ 30 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKR 30 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4677888888888888999999999883
No 4
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=47.68 E-value=37 Score=40.28 Aligned_cols=56 Identities=13% Similarity=0.342 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhcCC-----chHHHHHHHHHHHHH------HHHHHHHHHHh
Q 008373 27 ATVLTVFVVVSLIVERSIHHLSNWLRKTNR-----KPLLAAVEKMKEEMM------LLGFISLFLTA 82 (568)
Q Consensus 27 A~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~k-----kaL~eALeKiKeELM------LLGFISLLLtv 82 (568)
.....+.++|.+.+++++|..-++.+.+++ .|+.+|+.|...=++ -+||+||+.+-
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 345567788999999999999999887766 377777777766555 37999998753
No 5
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=46.99 E-value=53 Score=26.41 Aligned_cols=47 Identities=9% Similarity=0.179 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCchHHHHHHHHHHHH
Q 008373 24 WSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPLLAAVEKMKEEM 70 (568)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeEL 70 (568)
+-++++..+..++.+++=-.+.....+=.|++.+.+-..+++++.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666555666677888899888886
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=46.45 E-value=30 Score=30.82 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=35.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHH-------HhhHhhhcCCchHHHHHHH
Q 008373 20 LTPTWSVATVLTVFVVVSLIVERSIHH-------LSNWLRKTNRKPLLAAVEK 65 (568)
Q Consensus 20 ~TPTWaVA~Vc~v~V~iSl~~Er~LH~-------Lgk~Lkkk~kkaL~eALeK 65 (568)
||.-|...+++.+++++..++.+.+-. +.+|+++++++.-++||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888765 5678888887777777665
No 7
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=37.42 E-value=1.1e+02 Score=29.88 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008373 58 PLLAAVEKMKEEMMLLGFISLFLTATSSS 86 (568)
Q Consensus 58 aL~eALeKiKeELMLLGFISLLLtv~q~~ 86 (568)
+-.+.||++-.-++..||+-|.++..-+.
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~ 144 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGA 144 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44578899999999999999999887664
No 8
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=31.30 E-value=24 Score=36.27 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHh
Q 008373 273 HSYMIRSMEEEFQRIVGVSGPLWGFVVAFMLF 304 (568)
Q Consensus 273 hkYi~RsLEdDFk~VVGIS~~LW~fvviFlLl 304 (568)
+.|=-| +||+-.++| +..||-||+|++|.
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm 53 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLM 53 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHH
Confidence 445444 899988888 78999999887654
No 9
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=29.14 E-value=93 Score=24.94 Aligned_cols=28 Identities=25% Similarity=0.617 Sum_probs=14.4
Q ss_pred Cchhh-----HHHHHHHHHHHHHHHHHHHHHhh
Q 008373 22 PTWSV-----ATVLTVFVVVSLIVERSIHHLSN 49 (568)
Q Consensus 22 PTWaV-----A~Vc~v~V~iSl~~Er~LH~Lgk 49 (568)
|||.- ..+..+|.-+.+.+=.-+..+..
T Consensus 2 p~wlt~iFsvvIil~If~~iGl~IyQkikqIrg 34 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGIFAWIGLSIYQKIKQIRG 34 (49)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77753 33333444455555555555544
No 10
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=27.72 E-value=1.1e+02 Score=23.12 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 008373 23 TWSVATVLTVFVVVSLIVERSIHH 46 (568)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~LH~ 46 (568)
.|...+...++++++++..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 2 AWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHh
Confidence 455556666888899999986544
No 11
>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].
Probab=26.67 E-value=1.5e+02 Score=29.33 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=14.5
Q ss_pred hhhhHHHHHHhhhhHHHHHH
Q 008373 316 AIIPVTLVLLVGSKLQHVIA 335 (568)
Q Consensus 316 sfiPlillLlVGtKLq~IIt 335 (568)
-++|+.|+|++||-=-+|++
T Consensus 129 v~~Pi~LmLlLg~VH~QIVS 148 (159)
T PF12129_consen 129 VFGPICLMLLLGTVHCQIVS 148 (159)
T ss_pred HHHHHHHHHHHHHhhheeee
Confidence 36999999999994334433
No 12
>COG3114 CcmD Heme exporter protein D [Intracellular trafficking and secretion]
Probab=25.99 E-value=1.3e+02 Score=25.75 Aligned_cols=38 Identities=26% Similarity=0.606 Sum_probs=22.0
Q ss_pred HhccCCcchhHHHhh----hhHHHHHHhhh-----hHHHHHHHHHhH
Q 008373 303 LFNVKGSNLYFWIAI----IPVTLVLLVGS-----KLQHVIATLALE 340 (568)
Q Consensus 303 LlNv~Gw~~yfWlsf----iPlillLlVGt-----KLq~IIt~LAle 340 (568)
++|..|...|-|+++ +|++++.+.-- -|+.|..++|-|
T Consensus 9 FfaMGgyafyVWlA~~~tll~l~~l~v~sv~qrr~iL~~v~r~~aRe 55 (67)
T COG3114 9 FFAMGGYAFYVWLAVGMTLLPLAVLVVHSVLQRRAILRGVARQRARE 55 (67)
T ss_pred HHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888889865 66665444332 234444444444
No 13
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.16 E-value=87 Score=33.58 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=26.6
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHH-------HHhhHhhhcCC
Q 008373 19 ALTPTWSVATVLTVFVVVSLIVERSIH-------HLSNWLRKTNR 56 (568)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~LH-------~Lgk~Lkkk~k 56 (568)
=+|+-|...++..+++++.+++++++. .+.+|+.++++
T Consensus 37 ie~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 37 IEMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 356777777777777777778899995 44568777554
No 14
>PHA03105 EEV glycoprotein; Provisional
Probab=25.15 E-value=83 Score=31.22 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCch
Q 008373 26 VATVLTVFVVVSLIVERSIHHLSNWLRKTNRKP 58 (568)
Q Consensus 26 VA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kka 58 (568)
+.++|+.++++..++=-.-|...|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 346788889999999889999999999888865
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=24.18 E-value=62 Score=29.75 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCchH
Q 008373 24 WSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRKPL 59 (568)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kkaL 59 (568)
|+|.++++++++++++.=+ +|++||.+
T Consensus 5 ~~iii~~i~l~~~~~~~~~---------rRR~r~G~ 31 (130)
T PF12273_consen 5 FAIIIVAILLFLFLFYCHN---------RRRRRRGL 31 (130)
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHhhcCC
No 16
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=23.59 E-value=1.4e+02 Score=35.23 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=56.6
Q ss_pred hHHHHhhcccccccccchhHHHHHHhHHHHHhhhhccCCCCCCCceeeccccccccccccccccccCCCccccCCCCCCc
Q 008373 428 YALVTQMGTNYKAALIPRRIRETIHGWGKAARRKRRLGHFTDDSTIHTVTDASTVASLEEYDHQLIDIPETAIGAGNSTG 507 (568)
Q Consensus 428 YALVTQMGS~~K~~if~e~v~~~l~~W~~~akkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (568)
.|+-++|-++=.|.=|-|..+.-+.+..+.+.-.+=....+.++.-+. +.-.+.+++++++.-- |+ ..
T Consensus 281 ~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~~~~s~~--e~~p~s~~S~~n~~~g--p~--------~~ 348 (861)
T KOG1899|consen 281 NALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPSDSMSHS--ESFPVSSSSTTNNGKG--PR--------ST 348 (861)
T ss_pred HHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCccccccc--ccccccccccccccCC--cc--------cc
Confidence 577899999888888888888888887766554432222233333332 3344455555543322 11 11
Q ss_pred ceeeeecccCCCCCCCCCCCCCCccCccc
Q 008373 508 AEVELQPRNISNSPASVPNETSSRVGTPL 536 (568)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 536 (568)
.+-+-.|.+++|.+.|-+|-+|++.|++=
T Consensus 349 ~~~s~~p~~ssp~v~P~~~~~S~slg~lr 377 (861)
T KOG1899|consen 349 VQSSSSPNMSSPAVSPQHNWSSASLGTLR 377 (861)
T ss_pred ccCCCCCcCCCCCCCCccccccccccchh
Confidence 11122345567777787788888877753
No 17
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.10 E-value=93 Score=33.32 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=29.1
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHH-------hhHhhhcCC
Q 008373 19 ALTPTWSVATVLTVFVVVSLIVERSIHHL-------SNWLRKTNR 56 (568)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~LH~L-------gk~Lkkk~k 56 (568)
=+|+-|..++++.+++++.+++++++..+ ..|+.++|+
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 46788888888888888888899988544 567777554
No 18
>PF15050 SCIMP: SCIMP protein
Probab=20.43 E-value=1.5e+02 Score=28.20 Aligned_cols=33 Identities=18% Similarity=0.498 Sum_probs=24.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCCc
Q 008373 23 TWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNRK 57 (568)
Q Consensus 23 TWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~kk 57 (568)
.|++.+|. ||+||+.+--+|.-+..|+-|+.||
T Consensus 8 FWiiLAVa--II~vS~~lglIlyCvcR~~lRqGkk 40 (133)
T PF15050_consen 8 FWIILAVA--IILVSVVLGLILYCVCRWQLRQGKK 40 (133)
T ss_pred hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 47777776 6667777777888888888887764
No 19
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=20.27 E-value=1.2e+02 Score=36.17 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHhccCCcchhHHHhh----hhHHHHHHhhhh
Q 008373 292 GPLWGFVVAFMLFNVKGSNLYFWIAI----IPVTLVLLVGSK 329 (568)
Q Consensus 292 ~~LW~fvviFlLlNv~Gw~~yfWlsf----iPlillLlVGtK 329 (568)
+|+|+++++.+| ||+=+.++-. +.+++++++|++
T Consensus 649 iP~w~~~ll~vL----GwNE~m~vLrnPl~~~l~li~~~~~~ 686 (742)
T PF05879_consen 649 IPPWMYLLLLVL----GWNEFMAVLRNPLYFTLLLILGGGFY 686 (742)
T ss_pred CCHHHHHHHHHH----hHHHHHHHHHChHHHHHHHHHHHHHH
Confidence 678888777665 8998887744 444445555544
Done!