Query 008373
Match_columns 568
No_of_seqs 166 out of 255
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 00:41:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 52.3 23 0.00078 28.0 5.0 37 19-56 5-41 (54)
2 2knc_A Integrin alpha-IIB; tra 50.0 24 0.00081 27.8 4.8 37 19-56 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 41.6 36 0.0012 25.5 4.4 36 19-55 6-41 (42)
4 3uon_A Human M2 muscarinic ace 17.4 2.3E+02 0.0078 27.8 6.7 24 160-183 58-81 (467)
5 2uwj_E Type III export protein 11.4 73 0.0025 26.3 0.9 33 40-72 8-40 (70)
6 2knc_B Integrin beta-3; transm 11.2 4.7E+02 0.016 21.5 5.8 17 186-202 41-57 (79)
7 1x4o_A Splicing factor 4; stru 11.2 1.1E+02 0.0036 25.2 1.8 53 328-393 15-70 (78)
8 1zke_A Hypothetical protein HP 10.6 38 0.0013 28.6 -1.0 18 57-74 65-82 (83)
9 1rh4_A Right-handed coiled coi 10.4 97 0.0033 22.0 1.1 15 56-70 19-33 (35)
10 4h62_K Mediator of RNA polymer 9.6 1.4E+02 0.0048 21.7 1.8 22 54-75 7-28 (40)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=52.31 E-value=23 Score=27.96 Aligned_cols=37 Identities=5% Similarity=0.293 Sum_probs=21.8
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCC
Q 008373 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNR 56 (568)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~k 56 (568)
+..|.|.+.+-...-+++-.++=-++-++| +|||+++
T Consensus 5 ~~vp~WiIi~svl~GLLLL~Lii~~LwK~G-FFKR~~~ 41 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLLLMLLILALWKIG-FFKRPLK 41 (54)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHHHHHHHHHH-HTTSCCS
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCc
Confidence 468999654433333333344456777887 7777665
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=50.03 E-value=24 Score=27.81 Aligned_cols=37 Identities=11% Similarity=0.241 Sum_probs=23.8
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcCC
Q 008373 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTNR 56 (568)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~k 56 (568)
+..|.|.+.+-...-+++-.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 468999755444444444445556788887 7777765
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=41.64 E-value=36 Score=25.47 Aligned_cols=36 Identities=11% Similarity=0.256 Sum_probs=21.9
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhcC
Q 008373 19 ALTPTWSVATVLTVFVVVSLIVERSIHHLSNWLRKTN 55 (568)
Q Consensus 19 e~TPTWaVA~Vc~v~V~iSl~~Er~LH~Lgk~Lkkk~ 55 (568)
+..|.|.+.+-...-+++-.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 468999755444444444445556777877 666654
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=17.38 E-value=2.3e+02 Score=27.78 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 008373 160 LHRFIFVMAVTHISYSCLTMLLAI 183 (568)
Q Consensus 160 LHIFIFVLAV~HV~ys~lTm~Lg~ 183 (568)
.++||..||+..++++++++.+..
T Consensus 58 ~~~~l~~La~aDll~~~~~~p~~~ 81 (467)
T 3uon_A 58 NNYFLFSLACADLIIGVFSMNLYT 81 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999888776543
No 5
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=11.42 E-value=73 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=21.1
Q ss_pred HHHHHHHHhhHhhhcCCchHHHHHHHHHHHHHH
Q 008373 40 VERSIHHLSNWLRKTNRKPLLAAVEKMKEEMML 72 (568)
Q Consensus 40 ~Er~LH~Lgk~Lkkk~kkaL~eALeKiKeELML 72 (568)
+|..|+-.+.-..++=+--|+.||.++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444333333344599999999999986
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.19 E-value=4.7e+02 Score=21.54 Aligned_cols=17 Identities=24% Similarity=0.341 Sum_probs=12.9
Q ss_pred hhcHHHHHHHHhhcccc
Q 008373 186 IHSWRVWEEEAHMDRHD 202 (568)
Q Consensus 186 ir~Wk~WE~e~~~~~~~ 202 (568)
-|.++++|+|-++...+
T Consensus 41 rrE~~kFEkE~~~~~w~ 57 (79)
T 2knc_B 41 RKEFAKFEEERARAKWD 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccc
Confidence 67899999997665443
No 7
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=11.17 E-value=1.1e+02 Score=25.17 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHhHhhccccccccccc--CcCCCcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHhhh
Q 008373 328 SKLQHVIATLALENAGITGYFAGAKL--KPRDELFWFNKPELMLSLIHFILF-QNAFELASFFWFWWQF 393 (568)
Q Consensus 328 tKLq~IIt~LAlei~e~~~~~~g~~v--kPsD~lFWF~rP~llL~LIHfiLF-QNAFElAfF~W~~~~f 393 (568)
.++..||.++|.=|++.....+-.+. +.+|.-|+| || .+.=.-+|+-|-+++|
T Consensus 15 ~~~~~iIdktA~fVaknG~~fE~~l~~~~~~Np~F~F-------------L~d~~~~~h~YYr~kl~e~ 70 (78)
T 1x4o_A 15 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSF-------------LYDPNSQGYRYYRQKLDEF 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTT-------------TTCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHhcCCCCCCee-------------cCCCCCCCcHHHHHHHHHH
Confidence 47889999999999885544433221 357888999 55 4555667888888776
No 8
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=10.62 E-value=38 Score=28.60 Aligned_cols=18 Identities=33% Similarity=0.733 Sum_probs=14.6
Q ss_pred chHHHHHHHHHHHHHHHH
Q 008373 57 KPLLAAVEKMKEEMMLLG 74 (568)
Q Consensus 57 kaL~eALeKiKeELMLLG 74 (568)
|+..+||.|+|.|+...|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 568899999999986544
No 9
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=10.38 E-value=97 Score=21.97 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=11.8
Q ss_pred CchHHHHHHHHHHHH
Q 008373 56 RKPLLAAVEKMKEEM 70 (568)
Q Consensus 56 kkaL~eALeKiKeEL 70 (568)
|-..+.||.|||.|+
T Consensus 19 kaeilaalkkikqei 33 (35)
T 1rh4_A 19 KAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 456888999999885
No 10
>4h62_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=9.57 E-value=1.4e+02 Score=21.69 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=18.1
Q ss_pred cCCchHHHHHHHHHHHHHHHHH
Q 008373 54 TNRKPLLAAVEKMKEEMMLLGF 75 (568)
Q Consensus 54 k~kkaL~eALeKiKeELMLLGF 75 (568)
-+||+|-.--||+.|.|=||.-
T Consensus 7 vnkkalgqdtekmeeqldllsa 28 (40)
T 4h62_K 7 VNKKALGQDTEKMEEQLDLLSA 28 (40)
T ss_pred ccHHhhcccHHHHHHHHHHHHH
Confidence 3678999999999999887643
Done!