Query 008373
Match_columns 568
No_of_seqs 166 out of 255
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 00:41:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ug0a_ a.217.1.1 (A:) Splicin 28.2 14 0.001 29.2 2.3 53 328-393 25-80 (88)
2 d1vf6c_ a.194.1.1 (C:) Maguk p 22.9 17 0.0013 26.2 1.7 18 366-383 29-46 (51)
3 d1x4oa1 a.217.1.1 (A:8-72) Spl 21.4 19 0.0014 26.7 1.8 53 328-393 8-63 (65)
4 d1xrda1 f.3.1.1 (A:1-52) Light 9.4 65 0.0047 23.4 1.8 13 158-170 15-27 (52)
5 d1iwga8 f.35.1.1 (A:513-566,A: 9.0 2E+02 0.015 24.8 5.6 56 26-81 111-178 (222)
6 d1zkea1 a.30.6.1 (A:1-79) Hypo 8.3 50 0.0037 25.7 0.8 15 57-71 63-77 (79)
7 d2dt6a1 a.217.1.1 (A:48-110) S 8.3 96 0.007 22.6 2.4 51 330-393 2-54 (63)
8 d1ep3a_ c.1.4.1 (A:) Dihydroor 7.0 1.6E+02 0.012 26.0 4.0 31 38-68 278-308 (311)
9 d1yu8x1 a.14.1.1 (X:42-76) Vil 6.9 42 0.0031 22.5 -0.2 12 281-292 3-14 (35)
10 d3b60a2 f.37.1.1 (A:10-328) Mu 6.9 2.2E+02 0.016 23.6 4.6 23 24-46 156-178 (319)
No 1
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.23 E-value=14 Score=29.20 Aligned_cols=53 Identities=19% Similarity=0.053 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHhHhhcccccccccc--cCcCCCcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHhhh
Q 008373 328 SKLQHVIATLALENAGITGYFAGAK--LKPRDELFWFNKPELMLSLIHFILF-QNAFELASFFWFWWQF 393 (568)
Q Consensus 328 tKLq~IIt~LAlei~e~~~~~~g~~--vkPsD~lFWF~rP~llL~LIHfiLF-QNAFElAfF~W~~~~f 393 (568)
.++..||.++|.=|++.....+-.+ =+.+|..||| |+ ++.=.-+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~F-------------L~d~~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTF-------------LHDKNSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHH-------------HHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCcee-------------eCCCCCCCcHHHHHHHHHH
Confidence 3788999999999987543333322 1578889999 66 5666668888888876
No 2
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.95 E-value=17 Score=26.18 Aligned_cols=18 Identities=44% Similarity=0.683 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHhhhhhhH
Q 008373 366 ELMLSLIHFILFQNAFEL 383 (568)
Q Consensus 366 ~llL~LIHfiLFQNAFEl 383 (568)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 3
>d1x4oa1 a.217.1.1 (A:8-72) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.36 E-value=19 Score=26.68 Aligned_cols=53 Identities=17% Similarity=0.104 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhHhhccccccccccc--CcCCCcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHhhh
Q 008373 328 SKLQHVIATLALENAGITGYFAGAKL--KPRDELFWFNKPELMLSLIHFILF-QNAFELASFFWFWWQF 393 (568)
Q Consensus 328 tKLq~IIt~LAlei~e~~~~~~g~~v--kPsD~lFWF~rP~llL~LIHfiLF-QNAFElAfF~W~~~~f 393 (568)
.++..||.++|.-|++.+...+-.+. +-+|--||| || .+.-.-.|+-|-+++|
T Consensus 8 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~F-------------L~~~~~~~~~YYr~kl~~~ 63 (65)
T d1x4oa1 8 EEAKNLAEKLARFIADGGPEVETIALQNNRENQAFSF-------------LYDPNSQGYRYYRQKLDEF 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHCSSTTT-------------TTCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHhccCCCCcee-------------ecCCCCCCcHHHHHHHHHH
Confidence 36789999999999875544433221 457778999 76 3666778888887775
No 4
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.35 E-value=65 Score=23.42 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHH
Q 008373 158 EQLHRFIFVMAVT 170 (568)
Q Consensus 158 HQLHIFIFVLAV~ 170 (568)
--+|.|+|+||+.
T Consensus 15 va~~~fL~~LAl~ 27 (52)
T d1xrda1 15 VGLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4578999999963
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=9.03 E-value=2e+02 Score=24.82 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhh--hcCCchHHHHHHHHHHHH----------HHHHHHHHHHH
Q 008373 26 VATVLTVFVVVSLIVERSIHHLSNWLR--KTNRKPLLAAVEKMKEEM----------MLLGFISLFLT 81 (568)
Q Consensus 26 VA~Vc~v~V~iSl~~Er~LH~Lgk~Lk--kk~kkaL~eALeKiKeEL----------MLLGFISLLLt 81 (568)
+.+....++++.+.+..++|.+..+.+ +++.+...+|..+.-+|- +.+||++|.+.
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 445566777899999999999998865 333355566665554443 36888888774
No 6
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=8.32 E-value=50 Score=25.66 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.7
Q ss_pred chHHHHHHHHHHHHH
Q 008373 57 KPLLAAVEKMKEEMM 71 (568)
Q Consensus 57 kaL~eALeKiKeELM 71 (568)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 568999999999974
No 7
>d2dt6a1 a.217.1.1 (A:48-110) Splicing factor 3 subunit 1, SF3A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.25 E-value=96 Score=22.59 Aligned_cols=51 Identities=18% Similarity=0.060 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHhhcccccccccc--cCcCCCcccccchhHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 008373 330 LQHVIATLALENAGITGYFAGAK--LKPRDELFWFNKPELMLSLIHFILFQNAFELASFFWFWWQF 393 (568)
Q Consensus 330 Lq~IIt~LAlei~e~~~~~~g~~--vkPsD~lFWF~rP~llL~LIHfiLFQNAFElAfF~W~~~~f 393 (568)
+..||.++|.=|+......+..+ =+.+|.-|.|=+| +.=.-+||-|-+.+|
T Consensus 2 i~~iI~~tA~fVak~G~~fE~~l~~~e~~np~F~FL~~-------------~~~~h~YY~~~l~~~ 54 (63)
T d2dt6a1 2 VRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNP-------------NDPYHAYYRHKVSEF 54 (63)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHSTTCGGGGGGST-------------TSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHhccCCCcCcCCCC-------------CCCCcHHHHHHHHHH
Confidence 67899999999987543333322 2457778888443 332346777777665
No 8
>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}
Probab=7.00 E-value=1.6e+02 Score=25.97 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhHhhhcCCchHHHHHHHHHH
Q 008373 38 LIVERSIHHLSNWLRKTNRKPLLAAVEKMKE 68 (568)
Q Consensus 38 l~~Er~LH~Lgk~Lkkk~kkaL~eALeKiKe 68 (568)
.++++++..|.+|+++++-+.+-|...|+|+
T Consensus 278 ~i~~~I~~~L~~~m~~~g~~si~e~~g~~k~ 308 (311)
T d1ep3a_ 278 FVCPKIIDKLPELMDQYRIESLESLIQEVKE 308 (311)
T ss_dssp THHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 4678999999999999988899999999986
No 9
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=6.92 E-value=42 Score=22.51 Aligned_cols=12 Identities=25% Similarity=0.800 Sum_probs=8.4
Q ss_pred HHhcccccccch
Q 008373 281 EEEFQRIVGVSG 292 (568)
Q Consensus 281 EdDFk~VVGIS~ 292 (568)
++||+.|.|+|.
T Consensus 3 d~dF~~vfgmsr 14 (35)
T d1yu8x1 3 DEDFKAVFGMTR 14 (35)
T ss_dssp HHHHHHHHSSCH
T ss_pred HHHHHHHHCCCH
Confidence 567777777764
No 10
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=6.88 E-value=2.2e+02 Score=23.63 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 008373 24 WSVATVLTVFVVVSLIVERSIHH 46 (568)
Q Consensus 24 WaVA~Vc~v~V~iSl~~Er~LH~ 46 (568)
|.++.++.+++.+.+++-....+
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~ 178 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSK 178 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhh
Confidence 56667777766666665544443
Done!