Query 008375
Match_columns 568
No_of_seqs 140 out of 167
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 23:02:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2498 IK cytokine down-regul 100.0 6E-117 1E-121 924.3 19.8 450 3-556 65-539 (544)
2 PF07808 RED_N: RED-like prote 100.0 2.1E-62 4.5E-67 483.4 11.2 217 4-222 1-238 (238)
3 PF07807 RED_C: RED-like prote 100.0 2.1E-58 4.5E-63 410.0 8.7 107 446-553 1-110 (118)
4 KOG2498 IK cytokine down-regul 99.9 2.3E-23 4.9E-28 220.6 7.8 302 18-338 13-319 (544)
5 COG4712 Uncharacterized protei 36.8 16 0.00035 37.2 1.0 32 482-513 81-113 (234)
6 KOG0573 Asparagine synthase [A 16.7 52 0.0011 37.3 0.4 65 442-515 433-501 (520)
7 PF12907 zf-met2: Zinc-binding 13.9 1.1E+02 0.0024 23.8 1.4 23 427-453 18-40 (40)
8 PF08653 DASH_Dam1: DASH compl 11.7 78 0.0017 26.4 0.0 12 504-515 37-48 (58)
9 PF05422 SIN1: Stress-activate 9.6 1E+02 0.0022 35.3 0.0 11 444-454 60-70 (523)
10 PF15145 DUF4577: Domain of un 8.5 1.6E+02 0.0036 27.8 0.9 34 508-544 86-120 (128)
No 1
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-117 Score=924.35 Aligned_cols=450 Identities=47% Similarity=0.733 Sum_probs=386.9
Q ss_pred ccchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccc---cccccCCCCCcchHHHHHhhhhhhhhhhcC
Q 008375 3 SGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELG---SFHAVAPPGNVDLRLADAQKLSIEKSKYLG 79 (568)
Q Consensus 3 ~~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~---~~~a~~~~~~~d~~~~e~~~~~ieesk~~g 79 (568)
.++|+||+++++++.+++.| .+.+|||||+|||+|+|.||..+++. +|.+|.+....+...++.|+|+|++|+|||
T Consensus 65 e~~kal~~~~k~~h~~k~de-a~lkyRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I~eSKfLG 143 (544)
T KOG2498|consen 65 EKKKALYGKLKKQHIEKEDE-AALKYRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLIQESKFLG 143 (544)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHHHHhhhcC
Confidence 47899999999999999666 46779999999999999999987643 599999988888888999999999999999
Q ss_pred CCccccccccchhHHHHHHHhhhhccCCCCCCCCCCCc-----cccccchhhhHhHH-----------HHHHHHHHHhcc
Q 008375 80 GDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKS-----RTSKEDQQLSFRTA-----------MAKSVYQWIVKP 143 (568)
Q Consensus 80 gd~~~t~lvkGLD~~Ll~~~r~~~~~~~~~ede~~~~~-----~~~k~d~~~~F~t~-----------~gr~V~~~l~K~ 143 (568)
|||+||||||||||+||++||.+|.....++++..+.. ........+.+.++ |+++||..||++
T Consensus 144 GDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~~~~~r~~~~~l~~n 223 (544)
T KOG2498|consen 144 GDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLKKKLGRNVYRVLFKN 223 (544)
T ss_pred CccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhhhhhcchhhhHhhhc
Confidence 99999999999999999999999998877665442221 11112234556555 899999999998
Q ss_pred cccccccccCCCCceEEEEeC-CCC-CCccchhhhhcccCCCC-CccccccccchhHHHHHHHHHHHHhcCCCcch-hhh
Q 008375 144 QTVMKTNEMFLPGRMSFIFNT-GGY-SNDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKV-LKK 219 (568)
Q Consensus 144 k~~~k~nelFlPGRMaYvfdL-d~~-~~DIPTTL~RSKaDcp~-~ee~~t~~~~~~Vi~Kl~kImSylR~G~~gK~-~KK 219 (568)
+ ...+|++|+||||+||++| ++. ..+|||||.||++|||. +++..++++|++||.+|.+|+||||.|.+.|+ ++|
T Consensus 224 ~-~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~~~k 302 (544)
T KOG2498|consen 224 K-EDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKPLKK 302 (544)
T ss_pred c-ccccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCcccc
Confidence 6 4789999999999999999 554 69999999999999999 78889999999999999999999999997776 666
Q ss_pred hhhhhccccCCcccccccccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCcccccccCCCcCCCCCCCcccCCCcc
Q 008375 220 KKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTD 299 (568)
Q Consensus 220 kkkErd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~~~~~~~~l~p~~~~p~~~~~~~~~k~~~~~~~~~dddIF~d~G~D 299 (568)
|.+.+ ..+ .+ +...+.+||.+.| |
T Consensus 303 rDk~k-~~~------------------------------------~~------------------P~~~~~~iy~~~g-~ 326 (544)
T KOG2498|consen 303 RDKPK-LYF------------------------------------DK------------------PVEGEKVIYEDEG-D 326 (544)
T ss_pred ccccc-ccc------------------------------------cC------------------ccccccccccccc-c
Confidence 65553 110 00 1245889998777 9
Q ss_pred ccCCCCCCCCCCCccccccCcccccccCCCCcCCCCCCCCCCCCccccccCcchHHHHHHhhcCCcccchhhhhHhhhcc
Q 008375 300 YTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAY 379 (568)
Q Consensus 300 Y~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p~~~p~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 379 (568)
| ||....+ .+.|+... |++++.+++..++..+|+.|+++ |
T Consensus 327 Y-~P~~~s~----------------------------------~~~~~~ks-~~a~qdrg~d~~~d~e~~~~rd~----~ 366 (544)
T KOG2498|consen 327 Y-VPSTPSA----------------------------------GSRDQGKS-YGAMQDRGRDRGRDRERQRYRDA----N 366 (544)
T ss_pred c-cCCCCCC----------------------------------Cccccccc-cchhhhcccCCCCcchhhhhhhh----h
Confidence 9 8853111 12344433 78888889999999999999986 6
Q ss_pred ccccccchhhhhhhhhcCCCCCCCccccHHHHhhccCCcccchHHHHHHHHHhhhhcCCCCCCCCccccccCChhhhhhc
Q 008375 380 PEQYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNRE 459 (568)
Q Consensus 380 ~~q~~~~~~~~~~~~~~~~~~~~p~~~~q~~~~~gl~~~f~rdd~~~~~~re~~~rekdp~f~~esYaECYPG~~e~~~~ 459 (568)
.++|+++++.+|....- ..+|..|+++++++|++++|.+++|+ |+++-.++++||-|+|+||+|||||++|||++
T Consensus 367 r~r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ECYPgl~em~he 441 (544)
T KOG2498|consen 367 RDRYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYAECYPGLQEMNHE 441 (544)
T ss_pred hhhhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchhhhccchhhhccc
Confidence 67889888888876542 46799999999999999999999988 88999999999999999999999999999999
Q ss_pred ccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccc--hhhHhHHHHHHHH
Q 008375 460 IVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNELHKIN 537 (568)
Q Consensus 460 i~DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRk~n--~d~kLdre~~KI~ 537 (568)
|||||||+||||||||| ||||||||||||||||++||++||||||||||||||||||||||||+ .+|+|||||||||
T Consensus 442 i~~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~~~~Ldre~~~In 520 (544)
T KOG2498|consen 442 IVDSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRNDKAELDRELHKIN 520 (544)
T ss_pred ccccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccchHHHHHHHHHHHH
Confidence 99999999999999999 79999999999999999999999999999999999999999999984 7899999999999
Q ss_pred HHHHhhhcccCCCCCCCCc
Q 008375 538 KILARKKMEKDTNGEGGHY 556 (568)
Q Consensus 538 ~Il~krK~~~~~~~~~~~~ 556 (568)
+||.|||++++||++|+.|
T Consensus 521 kIi~krK~~~~ggggg~e~ 539 (544)
T KOG2498|consen 521 KIITKRKMEKDGGGGGAEY 539 (544)
T ss_pred HHHHHhhccccCCCCcccc
Confidence 9999999999999888433
No 2
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=100.00 E-value=2.1e-62 Score=483.44 Aligned_cols=217 Identities=46% Similarity=0.806 Sum_probs=191.5
Q ss_pred cchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCcc
Q 008375 4 GKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVE 83 (568)
Q Consensus 4 ~kk~~~~kl~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~ 83 (568)
|||+|++++++++..+..+ ++++|||||+|||+|.++||..+++.+|+++.+...++..+++.++++|++|+|||||++
T Consensus 1 Kkk~~~~~~~~~~~~~~~~-~~~~YrDRA~eRR~~~~~d~~~~~~~~~~a~~~~~~~~~~~~e~~~~~i~esk~lGGD~~ 79 (238)
T PF07808_consen 1 KKKKKYKKLKKQEEPKGKK-LAPGYRDRAKERREGENDDYEEAELSALRALEPDVKLDQETAERRRQLIEESKYLGGDLE 79 (238)
T ss_pred CCchhhhhHHhhhcccccc-cccchhhHHHHHHcccCcchhhhHHHHHHHhhhhcccchhhHHHHHHHHHHHhhccCCcc
Confidence 7899999999999998887 699999999999999999999988888999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhhhccCCCCCCCCCCC---c--------------cccccchhhhHhHHHHHHHHHHH--hccc
Q 008375 84 HTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK---S--------------RTSKEDQQLSFRTAMAKSVYQWI--VKPQ 144 (568)
Q Consensus 84 ~t~lvkGLD~~Ll~~~r~~~~~~~~~ede~~~~---~--------------~~~k~d~~~~F~t~~gr~V~~~l--~K~k 144 (568)
||||||||||+||+|||++|.....++++..+. + ........+.|.|.++++||+++ ++++
T Consensus 80 ~THLVKGLD~~LL~kvR~ei~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~I~~~~~~~~~~ 159 (238)
T PF07808_consen 80 HTHLVKGLDFALLEKVRAEIAKKEKEEEEEEEKVEEEEEQELDEEEEELEEKEKESEEEIEFKTKLARNIFKTLFQFKSK 159 (238)
T ss_pred ccchhhhhcHHHHHHHHHHHhcccccchhHHHhhhhhhhhhcchhhhhhhhhhcccccchhHhhHHHHHHHHHHHhcccc
Confidence 999999999999999999998876654431100 0 01123456999999999999999 4554
Q ss_pred ccccccccCCCCceEEEEeC-CCC-CCccchhhhhcccCCCCCccccccccchhHHHHHHHHHHHHhcCCCcchhhhhhh
Q 008375 145 TVMKTNEMFLPGRMSFIFNT-GGY-SNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 222 (568)
Q Consensus 145 ~~~k~nelFlPGRMaYvfdL-d~~-~~DIPTTL~RSKaDcp~~ee~~t~~~~~~Vi~Kl~kImSylR~G~~gK~~KKkkk 222 (568)
. ..+|++|+|||||||||| +++ .+||||||+|||+|||.+++++++++|++||+||+|||||||+|+++|++|||++
T Consensus 160 ~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsylr~g~~~kk~KKk~k 238 (238)
T PF07808_consen 160 K-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSYLRQGSRHKKNKKKKK 238 (238)
T ss_pred c-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHHHhcccchhhhhccCC
Confidence 4 567999999999999999 776 7999999999999999999999999999999999999999999999998888754
No 3
>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].
Probab=100.00 E-value=2.1e-58 Score=409.98 Aligned_cols=107 Identities=68% Similarity=1.103 Sum_probs=101.5
Q ss_pred cccccCChhhhhhcccCCCcccccccccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhccccccccccccc--
Q 008375 446 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ-- 523 (568)
Q Consensus 446 YaECYPG~~e~~~~i~DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRk~-- 523 (568)
|||||||++|||++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+
T Consensus 1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~ 79 (118)
T PF07807_consen 1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE 79 (118)
T ss_pred CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence 9999999999999999999999999999999 5999999999999999999999999999999999999999999996
Q ss_pred -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 008375 524 -NKDQKLTNELHKINKILARKKMEKDTNGEG 553 (568)
Q Consensus 524 -n~d~kLdre~~KI~~Il~krK~~~~~~~~~ 553 (568)
+++++|||||++|++||++||++++++..+
T Consensus 80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~ 110 (118)
T PF07807_consen 80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG 110 (118)
T ss_pred hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence 467889999999999999999888766544
No 4
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-23 Score=220.62 Aligned_cols=302 Identities=25% Similarity=0.250 Sum_probs=244.9
Q ss_pred CCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCccccccccchhHHHHH
Q 008375 18 EKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLN 97 (568)
Q Consensus 18 ~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~~t~lvkGLD~~Ll~ 97 (568)
+++.+..-.+|+++++++|. .+++|+....++++..++.+-.+......+ +++.+++|+|++.|+|+|| ||+++|.
T Consensus 13 ~kL~ndDFRKLL~tpra~~p-a~~~~a~p~~ss~~~~~p~~~~~~~~~~Ar--~~e~~kal~~~~k~~h~~k-~dea~lk 88 (544)
T KOG2498|consen 13 SKLTNDDFRKLLATPRAARP-ANPTSAPPSKSSFHHEMPREYKEDEDKAAR--SREKKKALYGKLKKQHIEK-EDEAALK 88 (544)
T ss_pred hhcccchhHHHhcCcccCCC-CCcccCCcccCcccccCChhhhccccchhh--hhhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555556899999999998 689999988889999998877766554444 6788999999999999999 9999998
Q ss_pred HHhhhhccCCCCCCCCCCCccccccchhhhHhHHHHHHHHHHHhcccccccccccCCCCceEEEEeC-CCCCCccchhhh
Q 008375 98 KVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNT-GGYSNDIPTTLH 176 (568)
Q Consensus 98 ~~r~~~~~~~~~ede~~~~~~~~k~d~~~~F~t~~gr~V~~~l~K~k~~~k~nelFlPGRMaYvfdL-d~~~~DIPTTL~ 176 (568)
+|.++.......+...+....+.+.+.+.|.+.+.+.+++++.+.+.+ ..+ +||+|+|.++..+ .-....|++++.
T Consensus 89 -yRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I-~eS-KfLGGDm~hTHLVkGLD~~LL~KVRs 165 (544)
T KOG2498|consen 89 -YRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLI-QES-KFLGGDMEHTHLVKGLDYALLQKVRS 165 (544)
T ss_pred -HHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHH-HHh-hhcCCccceeeeecchhHHHHHHHHH
Confidence 777776665533322223334467788999999999999999988753 334 9999999999999 555699999999
Q ss_pred hcccCCCCCccccccccch--hHHHHHHHHHHHHhcCCCcchhhhhhhhhccccCCcccccccccccccCCCCCCCCCCC
Q 008375 177 RSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKVTGKTSTVVNEYDEEDKPSKANSGIPN 254 (568)
Q Consensus 177 RSKaDcp~~ee~~t~~~~~--~Vi~Kl~kImSylR~G~~gK~~KKkkkErd~~~~Gr~~~~~~d~~~~~k~~k~~g~~~~ 254 (568)
++.+.|+..++.+...+++ ++.+.+.+|+++||+|..++.++ ++..++. ..+++-++++++..-......+..
T Consensus 166 e~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~-~~~~r~~----~~~l~~n~~~~~n~Lf~~GrmaYV 240 (544)
T KOG2498|consen 166 EIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLK-KKLGRNV----YRVLFKNKEDERNELFAPGRMAYV 240 (544)
T ss_pred HhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhh-hhhcchh----hhHhhhccccccccccCCCCccee
Confidence 9999999999989999999 99999999999999999999999 5667653 356677888888877777778888
Q ss_pred CCcccccCCCCCC-CCCCCCcc-cccccCCCcCCCCCCCcccCCCccccCCCCCCCCCCCccccccCcccccccCCCCcC
Q 008375 255 GKTEKEILPPPPP-PPKKNHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSES 332 (568)
Q Consensus 255 ~~~~~~~l~p~~~-~p~~~~~~-~~~k~~~~~~~~~dddIF~d~G~DY~vP~~~~~~s~~sed~~~s~~~~~r~sYF~~p 332 (568)
...+.++++|+.| ++.-+..+ .+..+.+++....|+.||...+++|.++..+..+++ .+.|++.+ +||..|
T Consensus 241 viLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P 313 (544)
T KOG2498|consen 241 VILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKP 313 (544)
T ss_pred eeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCc
Confidence 9999999998888 45556667 887888888999999999999999989988777764 34555666 888887
Q ss_pred CCCCCC
Q 008375 333 VYGPVP 338 (568)
Q Consensus 333 ~~~p~p 338 (568)
+++--.
T Consensus 314 ~~~~~~ 319 (544)
T KOG2498|consen 314 VEGEKV 319 (544)
T ss_pred cccccc
Confidence 666443
No 5
>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.80 E-value=16 Score=37.16 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=25.8
Q ss_pred cccccCcCHHHHHHhhHhh-hhchhhHHhhccc
Q 008375 482 LHRWDFETEEEWATYNEQK-EAMPKAAFQFGVK 513 (568)
Q Consensus 482 ~~RWDFdTeEEy~~Ym~~k-EAlPKAAfQyGVK 513 (568)
|+|||.-++-+-+.|..+= -+|-.|||||||=
T Consensus 81 VTk~D~ge~~~~ea~Kg~aSdsmKRaavqfGIG 113 (234)
T COG4712 81 VTKQDVGEESNTEAEKGQASDSMKRAAVQFGIG 113 (234)
T ss_pred eeeccccccchhHHHhcccchHHHHHHhhhccc
Confidence 4789988888877777653 5789999999995
No 6
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=16.72 E-value=52 Score=37.33 Aligned_cols=65 Identities=32% Similarity=0.296 Sum_probs=40.4
Q ss_pred CCCccccc-cCChhhhhhcccCCCcccccccccCCCCCCC-CcccccCcCHHHHHHhhHhhhhc--hhhHHhhccccc
Q 008375 442 ISESYSEC-YPGYQEYNREIVDSDDEDDLSKMDMGGRAKG-RLHRWDFETEEEWATYNEQKEAM--PKAAFQFGVKMQ 515 (568)
Q Consensus 442 ~~esYaEC-YPG~~e~~~~i~DSDDE~DysKMD~G~~~KG-~~~RWDFdTeEEy~~Ym~~kEAl--PKAAfQyGVKm~ 515 (568)
++++=-|| ||=+.|+. +.=|-...=+.||++|-+. | ++ ---|+..|..-.-+- ||-|.|||-||+
T Consensus 433 iad~Gke~R~PFLde~v--V~~~~~l~~~~k~~l~l~G-G~Kl------llRe~~~~lGl~~~s~~pKrAmQFGSr~A 501 (520)
T KOG0573|consen 433 IADSGKEVRSPFLDENV--VKLSNALPVSVKMMLGLRG-GEKL------LLREAGRRLGLPSASTEPKRAMQFGSRMA 501 (520)
T ss_pred hhccCceEeccchHHHH--HHHHHhcchhHHhhhcccc-hhhH------HHHHHHHHhCCCcccccchHHHHhhhhhh
Confidence 56777777 56554321 1122333345699988642 3 11 124677777766654 999999999998
No 7
>PF12907 zf-met2: Zinc-binding
Probab=13.86 E-value=1.1e+02 Score=23.78 Aligned_cols=23 Identities=35% Similarity=0.858 Sum_probs=13.9
Q ss_pred HHHHHhhhhcCCCCCCCCccccccCCh
Q 008375 427 LQLREKDAREKDPNFISESYSECYPGY 453 (568)
Q Consensus 427 ~~~re~~~rekdp~f~~esYaECYPG~ 453 (568)
.+|+++.+. |-|- ..++||+|++
T Consensus 18 ~~L~eH~en-KHpK---~~~~~CFP~l 40 (40)
T PF12907_consen 18 PQLKEHAEN-KHPK---NTFEECFPNL 40 (40)
T ss_pred HHHHHHHHc-cCCC---CCHHHcCCCC
Confidence 345665542 2332 5699999985
No 8
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=11.72 E-value=78 Score=26.35 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.2
Q ss_pred hhhHHhhccccc
Q 008375 504 PKAAFQFGVKMQ 515 (568)
Q Consensus 504 PKAAfQyGVKm~ 515 (568)
.-|+|.||.+|+
T Consensus 37 SFasfLYGl~mn 48 (58)
T PF08653_consen 37 SFASFLYGLNMN 48 (58)
T ss_pred HHHHHHHHHHHH
Confidence 467888888875
No 9
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=9.63 E-value=1e+02 Score=35.32 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=0.0
Q ss_pred CccccccCChh
Q 008375 444 ESYSECYPGYQ 454 (568)
Q Consensus 444 esYaECYPG~~ 454 (568)
..++|||||+-
T Consensus 60 ~~~~~~~~~~d 70 (523)
T PF05422_consen 60 RVEFECYPSSD 70 (523)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 47899999983
No 10
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=8.53 E-value=1.6e+02 Score=27.81 Aligned_cols=34 Identities=38% Similarity=0.633 Sum_probs=22.2
Q ss_pred Hhhcccccc-cccccccchhhHhHHHHHHHHHHHHhhh
Q 008375 508 FQFGVKMQD-GRKTRKQNKDQKLTNELHKINKILARKK 544 (568)
Q Consensus 508 fQyGVKm~D-GRKTRk~n~d~kLdre~~KI~~Il~krK 544 (568)
+|-|-||-| -|+-.-..+| =.||+|||.||-||=
T Consensus 86 iQTgnkMddvSrRL~aEgKd---IdeLKKiN~mIvkrL 120 (128)
T PF15145_consen 86 IQTGNKMDDVSRRLTAEGKD---IDELKKINSMIVKRL 120 (128)
T ss_pred eeccchHHHHHHHHHhccCC---HHHHHHHHHHHHHHH
Confidence 478889987 2322222222 238999999998873
Done!