Query 008375
Match_columns 568
No_of_seqs 140 out of 167
Neff 3.7
Searched_HMMs 13730
Date Tue Mar 26 00:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008375.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008375hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6da3 d.56.1.2 (A:146-214,A: 14.5 21 0.0015 28.7 0.6 19 75-93 55-73 (105)
2 d2ifxa1 d.58.4.19 (A:1-108) Hy 8.8 72 0.0052 25.7 2.0 36 472-511 56-91 (108)
3 d1a6db3 d.56.1.2 (B:145-215,B: 7.7 46 0.0034 26.5 0.3 17 75-91 57-73 (107)
4 d2pcsa1 d.129.3.10 (A:1-147) H 6.7 27 0.002 27.1 -1.6 14 443-456 23-36 (147)
5 d1q3qa3 d.56.1.2 (A:146-216,A: 6.4 55 0.004 25.9 0.2 19 75-93 58-76 (107)
6 d1iyca_ g.31.1.2 (A:) Antifung 5.4 76 0.0055 21.1 0.4 14 173-186 9-22 (36)
7 d2bi6h1 g.3.12.1 (H:8-31) Brom 5.1 1E+02 0.0074 19.2 0.8 9 444-453 2-10 (26)
8 d1dp3a_ a.55.1.2 (A:) DNA-bind 4.5 1.5E+02 0.011 21.6 1.6 19 532-550 11-29 (55)
9 d1e5ka_ c.68.1.8 (A:) Molybden 4.4 1.2E+02 0.0091 24.1 1.2 12 485-496 176-187 (188)
10 d2b0ca1 c.108.1.2 (A:8-204) Pu 3.8 1.5E+02 0.011 22.5 1.2 10 158-167 1-10 (197)
No 1
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]}
Probab=14.46 E-value=21 Score=28.65 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.7
Q ss_pred hhhcCCCccccccccchhH
Q 008375 75 SKYLGGDVEHTHLVKGLDY 93 (568)
Q Consensus 75 sk~~ggd~~~t~lvkGLD~ 93 (568)
.+..||.++.|.||+||=+
T Consensus 55 ~k~~Ggs~~dS~lv~G~vl 73 (105)
T d1a6da3 55 DKKNGGSVNDTQFISAVSI 73 (105)
T ss_dssp EECCCSCSTTCEEESCEEE
T ss_pred hhccCCChhheeeeeccce
Confidence 5789999999999999943
No 2
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503 {Ralstonia eutropha [TaxId: 106590]}
Probab=8.78 E-value=72 Score=25.70 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=26.5
Q ss_pred ccCCCCCCCCcccccCcCHHHHHHhhHhhhhchhhHHhhc
Q 008375 472 MDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFG 511 (568)
Q Consensus 472 MD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyG 511 (568)
.|.|. --.||--=|.+++.|..||++-- -||=|.-|
T Consensus 56 ~dig~--vdaigecwf~~e~~y~~ym~sdi--rkawfehg 91 (108)
T d2ifxa1 56 FDIGH--VDAIGECWFKDDAAYATYMASDI--RKAWFEHG 91 (108)
T ss_dssp CCCCC--CCEEEEEEESSHHHHHHHHHCHH--HHHHHHHH
T ss_pred ccccc--cchhhhhhhccHHHHHHHHHHHH--HHHHHHhc
Confidence 46664 24455555999999999999864 78888766
No 3
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]}
Probab=7.66 E-value=46 Score=26.52 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=15.1
Q ss_pred hhhcCCCccccccccch
Q 008375 75 SKYLGGDVEHTHLVKGL 91 (568)
Q Consensus 75 sk~~ggd~~~t~lvkGL 91 (568)
-|..||.++-|.||+|+
T Consensus 57 ~k~~Ggs~~dS~li~G~ 73 (107)
T d1a6db3 57 VKKQGGAIDDTQLINKA 73 (107)
T ss_dssp EEEESSCGGGCEEESSC
T ss_pred EeecCCChhhcEEEecc
Confidence 46789999999999995
No 4
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=6.68 E-value=27 Score=27.14 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=12.0
Q ss_pred CCccccccCChhhh
Q 008375 443 SESYSECYPGYQEY 456 (568)
Q Consensus 443 ~esYaECYPG~~e~ 456 (568)
++.|++|.||.+.+
T Consensus 23 ~~~~~~~~Pg~~~~ 36 (147)
T d2pcsa1 23 PSILSKCIMGCKSL 36 (147)
T ss_dssp HHHHHHHSTTEEEE
T ss_pred HHHHHhhCcchhhc
Confidence 68999999999744
No 5
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]}
Probab=6.35 E-value=55 Score=25.91 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=16.8
Q ss_pred hhhcCCCccccccccchhH
Q 008375 75 SKYLGGDVEHTHLVKGLDY 93 (568)
Q Consensus 75 sk~~ggd~~~t~lvkGLD~ 93 (568)
-|..||.++-|-||+||=|
T Consensus 58 ~K~~Ggsv~dS~lv~G~vl 76 (107)
T d1q3qa3 58 EKKAGEGVEESELVKAVTI 76 (107)
T ss_dssp EEEEBSCGGGCEEESSEEE
T ss_pred EEecCCChhhCEEEccEEE
Confidence 5778999999999999955
No 6
>d1iyca_ g.31.1.2 (A:) Antifungal peptide scarabaecin {Beetle (Oryctes rhinoceros) [TaxId: 72550]}
Probab=5.38 E-value=76 Score=21.11 Aligned_cols=14 Identities=36% Similarity=0.741 Sum_probs=11.1
Q ss_pred hhhhhcccCCCCCc
Q 008375 173 TTLHRSKADCPVPD 186 (568)
Q Consensus 173 TTL~RSKaDcp~~e 186 (568)
..|+||+..||.-.
T Consensus 9 kvlirsrsncpkgk 22 (36)
T d1iyca_ 9 KVLIRSRSNCPKGK 22 (36)
T ss_dssp SCCCTTTSCCCSSC
T ss_pred eEEEeeccCCCCcc
Confidence 45899999999753
No 7
>d2bi6h1 g.3.12.1 (H:8-31) Bromelain inhibitor VI (cysteine protease inhibitor) {Pineapple (Ananas comosus) [TaxId: 4615]}
Probab=5.11 E-value=1e+02 Score=19.24 Aligned_cols=9 Identities=56% Similarity=1.763 Sum_probs=6.8
Q ss_pred CccccccCCh
Q 008375 444 ESYSECYPGY 453 (568)
Q Consensus 444 esYaECYPG~ 453 (568)
+.|+.| ||+
T Consensus 2 dtysdc-pgf 10 (26)
T d2bi6h1 2 DTYSDC-PGF 10 (26)
T ss_dssp CCCSSC-CTT
T ss_pred CccccC-chH
Confidence 678887 777
No 8
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM protein {Escherichia coli [TaxId: 562]}
Probab=4.48 E-value=1.5e+02 Score=21.62 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhcccCCC
Q 008375 532 ELHKINKILARKKMEKDTN 550 (568)
Q Consensus 532 e~~KI~~Il~krK~~~~~~ 550 (568)
=..|||.|+++|+.++...
T Consensus 11 v~ekIn~ive~rr~eGa~~ 29 (55)
T d1dp3a_ 11 IVYKINKIVERRRAEGAKS 29 (55)
T ss_dssp HHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 4579999999999876643
No 9
>d1e5ka_ c.68.1.8 (A:) Molybdenum cofactor biosynthesis protein MobA {Escherichia coli [TaxId: 562]}
Probab=4.44 E-value=1.2e+02 Score=24.09 Aligned_cols=12 Identities=33% Similarity=0.429 Sum_probs=10.8
Q ss_pred ccCcCHHHHHHh
Q 008375 485 WDFETEEEWATY 496 (568)
Q Consensus 485 WDFdTeEEy~~Y 496 (568)
+|.+|.|+|++|
T Consensus 176 ~ninTpeDl~r~ 187 (188)
T d1e5ka_ 176 VNVNTPEELARW 187 (188)
T ss_dssp CCCCSHHHHHTT
T ss_pred cCCCCHHHHHhh
Confidence 599999999987
No 10
>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}
Probab=3.84 E-value=1.5e+02 Score=22.52 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=7.8
Q ss_pred eEEEEeCCCC
Q 008375 158 MSFIFNTGGY 167 (568)
Q Consensus 158 MaYvfdLd~~ 167 (568)
|-|+|||+..
T Consensus 1 ~l~iFDlDgt 10 (197)
T d2b0ca1 1 MLYIFDLGNV 10 (197)
T ss_dssp CEEEECCBTT
T ss_pred CEEEEeCCCC
Confidence 7899999543
Done!