BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008377
(568 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 512
Score = 498 bits (1281), Expect = e-141, Method: Compositional matrix adjust.
Identities = 255/512 (49%), Positives = 368/512 (71%), Gaps = 5/512 (0%)
Query: 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNEL 75
EG KH SGL+EAV +NI ACK+L+ TRT+ GPNGMNKMVINHL+KLFVTNDAATI+ EL
Sbjct: 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILREL 60
Query: 76 EVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
EVQHPAAK++V+A Q++E+GDG N + FAG +L+ AEEL+R+GL SE+I GY A
Sbjct: 61 EVQHPAAKMIVMASHMQEQEVGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIAC 120
Query: 136 NKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKN 195
K ++N+ R+ +EV + +V SKQ+G E L LIA AC+ + P +
Sbjct: 121 KKAHEILPDLVCCSAKNL--RDVDEVSSLLHTSVMSKQYGNEVFLAKLIAQACVSIFP-D 177
Query: 196 PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255
+FNVDN+RV K+LG G+H+S+++ GMV K + G + +++ AK+AV++ D TET
Sbjct: 178 SGHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237
Query: 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL 315
KGTVLI +AE+L N++K EE ++ +KA+A++GA V+V+G V +MALH+ +Y +M++
Sbjct: 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLV 297
Query: 316 KISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS 375
+++SK++LRR C+T GA A+ +L P +++G+ DSV + E+G +V + ++E ++S
Sbjct: 298 RLNSKWDLRRLCKTVGATALPRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAIS 357
Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGL 435
T+VLRGSTD+++DD+ERAVDDGVNT+K + RD R+VPG ATEIELA+++ + GL
Sbjct: 358 TIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGL 417
Query: 436 DQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCA--DIS 493
+QYAI KFAE+FE +P+ LAEN+G+ A E+IS LYA H G VG+D+E V A D+
Sbjct: 418 EQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477
Query: 494 TMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
V D Y+ K++A+K A +AA TVLRVDQ++
Sbjct: 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQII 509
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|P Chain P, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|HH Chain h, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|PP Chain p, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|H Chain H, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|P Chain P, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|HH Chain h, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|PP Chain p, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 568
Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust.
Identities = 230/536 (42%), Positives = 348/536 (64%), Gaps = 26/536 (4%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+ K+G+ S D ++K+I A ++L + TS+GP G NK+++NHL K+ +TNDAAT++
Sbjct: 13 LFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATML 72
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
EL++ HPA K+LV+A + Q+ ++GDG NL + AGE+L +E+LI MGL EII GY
Sbjct: 73 RELDIVHPAVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYN 132
Query: 133 KAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVC 192
A T+ E D + E++ +K ++SK++G E+IL L+++A V
Sbjct: 133 MARKFTLKELDEMVV--GEITDKNDKNELLKMIKPVISSKKYGSEDILSELVSEAVSHVL 190
Query: 193 P-----KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNM---EKAKVAVF 244
P FNVD++RV K++GG L NST+++GMV + G +K++ +K KVAVF
Sbjct: 191 PVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKSLSEDKKHKVAVF 250
Query: 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMAL 304
+D + TETKGTVL+HNA+++ +++K EE +++ ++K +A+ G E IV+GA VGE+AL
Sbjct: 251 TCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELAL 310
Query: 305 HFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTI 364
H+ RY ++VLK+ SKFELRR CR GA + +L P P++LG V++V EIGG RVT+
Sbjct: 311 HYLNRYGILVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTV 370
Query: 365 VRNEGGGNS-VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS--RIVPGAAATEIEL 421
+ E G S ST++LRG+T + LDD+ERA+DDGV K + + S +++PGA ATEIEL
Sbjct: 371 FKQEQGEISRTSTIILRGATQNNLDDIERAIDDGVAAVKGLMKPSGGKLLPGAGATEIEL 430
Query: 422 ARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEH---ASGKT 478
R+ ++ + GL Q AI +FA +FE+VP+TLAE AGL+ E++ +LYA H G
Sbjct: 431 ISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNLYAAHNVTEPGAV 490
Query: 479 KV-----GIDL----ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
K G+D+ + GV DI N++D+ TK FA+ A +AA TVL +DQ++
Sbjct: 491 KTDHLYKGVDIDGESDEGV-KDIREENIYDMLATKKFAINVATEAATTVLSIDQII 545
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 176/536 (32%), Positives = 301/536 (56%), Gaps = 30/536 (5%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP I L EG + G D L NI A + ++ RT+LGP GM+KM+++ L +
Sbjct: 4 LSGQPVVI---LPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSLGDI 59
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND ATI++++++QHPAAK++V K Q +E GDG + AGE+L+ AEEL+ +
Sbjct: 60 VVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNI 119
Query: 123 HPSEIISGYTKAINKTIXXXXXXXXXGSENMD---VR---NTEEVIYRMKAAVASKQFGQ 176
HPS II GY A K E +D +R + EE + ++ A + + +
Sbjct: 120 HPSIIIKGYALAAEK-----------AQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168
Query: 177 --EEILCPLIADACIQVCPKNPANF--NVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS 232
+E+L L +A QV K + ++DN++ K G G+ S +VRG+V+ + V
Sbjct: 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 233 --IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA 290
K +E AK+A+ ++ TET + I + +QL ++ + EE ++ ++ +A++GA
Sbjct: 229 RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA 288
Query: 291 EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVD 350
V+ + ++A H+ +Y +M ++ K ++ + + TGA + + P+DLGY +
Sbjct: 289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAE 348
Query: 351 SVSVEEIGGARVTIVRNEGGGNSVS-TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409
V ++ G + V EG N + T+++RG T+ ++D++ERA++D V K + D
Sbjct: 349 VVEERKLAGENMIFV--EGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGA 406
Query: 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 469
++P A EIELA RL E++ + G + AI FA++ +++PKTLAENAGL+ +E++ +
Sbjct: 407 VLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKV 466
Query: 470 YAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
+EH + +GID+ G AD+ + + K A+K A++AA +LR+D V+
Sbjct: 467 ISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 288 bits (736), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 175/536 (32%), Positives = 300/536 (55%), Gaps = 30/536 (5%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP I L EG + G D L NI A + ++ RT+LGP GM+KM+++ L +
Sbjct: 4 LSGQPVVI---LPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSLGDI 59
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND ATI++++++QHPAAK++V K Q +E GDG + AGE+L+ AEEL+ +
Sbjct: 60 VVTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNI 119
Query: 123 HPSEIISGYTKAINKTIXXXXXXXXXGSENMD---VR---NTEEVIYRMKAAVASKQFGQ 176
HPS I GY A K E +D +R + EE + ++ A + + +
Sbjct: 120 HPSIITKGYALAAEK-----------AQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168
Query: 177 --EEILCPLIADACIQVCPKNPANF--NVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS 232
+E+L L +A QV K + ++DN++ K G G+ S +VRG+V+ + V
Sbjct: 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 233 --IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA 290
K +E AK+A+ ++ TET + I + +QL ++ + EE ++ ++ +A++GA
Sbjct: 229 RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA 288
Query: 291 EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVD 350
V+ + ++A H+ +Y +M ++ K ++ + + TGA + + P+DLGY +
Sbjct: 289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAE 348
Query: 351 SVSVEEIGGARVTIVRNEGGGNSVS-TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409
V ++ G + V EG N + T+++RG T+ ++D++ERA++D V K + D
Sbjct: 349 VVEERKLAGENMIFV--EGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGA 406
Query: 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 469
++P A EIELA RL E++ + G + AI FA++ +++PKTLAENAGL+ +E++ +
Sbjct: 407 VLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKV 466
Query: 470 YAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
+EH + +GID+ G AD+ + + K A+K A++AA +LR+D V+
Sbjct: 467 ISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 287 bits (734), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/536 (32%), Positives = 300/536 (55%), Gaps = 30/536 (5%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP I L EG + G D L NI A + ++ RT+LGP GM+KM+++ L +
Sbjct: 4 LSGQPVVI---LPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSLGDI 59
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND ATI++++++QHPAAK++V K Q +E GDG + AGE+L+ AEEL+ +
Sbjct: 60 VVTNDCATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNI 119
Query: 123 HPSEIISGYTKAINKTIXXXXXXXXXGSENMD---VR---NTEEVIYRMKAAVASKQFGQ 176
HPS I GY A K E +D +R + EE + ++ A + + +
Sbjct: 120 HPSIITKGYALAAEK-----------AQEILDEIAIRVDPDDEETLLKIAATSITGKNAE 168
Query: 177 --EEILCPLIADACIQVCPKNPANF--NVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS 232
+E+L L +A QV K + ++DN++ K G G+ S +VRG+V+ + V
Sbjct: 169 SHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHP 228
Query: 233 --IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA 290
K +E AK+A+ ++ TET + I + +QL ++ + EE ++ ++ +A++GA
Sbjct: 229 RMPKRVENAKIALINEALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGA 288
Query: 291 EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVD 350
V+ + ++A H+ +Y +M ++ K ++ + + TGA + + P+DLGY +
Sbjct: 289 NVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAE 348
Query: 351 SVSVEEIGGARVTIVRNEGGGNSVS-TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409
V ++ G + V EG N + T+++RG T+ ++D++ERA++D V K + D
Sbjct: 349 VVEERKLAGENMIFV--EGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGA 406
Query: 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 469
++P A EIELA RL E++ + G + AI FA++ +++PKTLAENAGL+ +E++ +
Sbjct: 407 VLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKV 466
Query: 470 YAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
+EH + +GID+ G AD+ + + K A+K A++AA +LR+D V+
Sbjct: 467 ISEHKNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 253 bits (645), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 156/523 (29%), Positives = 281/523 (53%), Gaps = 23/523 (4%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+LKEG + G + A NI+A K ++ RT+LGP GM+KM+++ + + ++ND ATI+
Sbjct: 10 VLKEGTQREQGKN-AQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATIL 68
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E++V+HP AK++V KAQ +GDG + +GE+L+ AE L+ G+HP+ I +GY
Sbjct: 69 KEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYR 128
Query: 133 KAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKA--AVASKQFG-QEEILCPLIADACI 189
A+N+ + + ++T++ R A A++ K G + L L+ A
Sbjct: 129 LAVNEARKII--------DEIAEKSTDDATLRKIALTALSGKNTGLSNDFLADLVVKAVN 180
Query: 190 QVCPKNPANFNVD--NVRVAKLLGGGLHNSTIVRGMVLKSDAVGS-----IKNMEKAKVA 242
V VD N++V K GG ++++ + G+V+ + V S +KN AK+A
Sbjct: 181 AVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKN---AKIA 237
Query: 243 VFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEM 302
+ ++ TE + V I + +++++ E + +++ + +SGA V++ + ++
Sbjct: 238 LIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDV 297
Query: 303 ALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARV 362
A H+ + + ++ K ++ + + TGA + L P LG ++V +IG R+
Sbjct: 298 AQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRM 357
Query: 363 TIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELA 422
T V +VS +++RG TD ++ ++ERA++D + D + + G A E ELA
Sbjct: 358 TFVMGCKNPKAVS-ILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELA 416
Query: 423 RRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 482
RL +++ G +Q AI FA++ E++P+TLAENAG++ + + L A+ G+ VG+
Sbjct: 417 MRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGV 476
Query: 483 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
DL+N D+ V D K AL+ A + A +LR+D V+
Sbjct: 477 DLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVI 519
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 249 bits (635), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 155/527 (29%), Positives = 286/527 (54%), Gaps = 15/527 (2%)
Query: 7 PYGIQSM-LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVT 65
P GI + LKEG G EAV NI A K + +++ GP GM+KM+++ L + +T
Sbjct: 11 PEGIPVIILKEGSSRTYG-KEAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITIT 69
Query: 66 NDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPS 125
ND ATI++++++QHPAAKLLV K Q EE DG + F+GE+++ AE+L+ +HP+
Sbjct: 70 NDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPT 129
Query: 126 EIISGYTKAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLI 184
IISGY KA + ++ + + +T+ + +++SK G E + ++
Sbjct: 130 IIISGYKKAEEVALQTIQEL----AQTVSINDTDLLRKIAMTSLSSKAVAGAREYIADIV 185
Query: 185 ADACIQVCPKNPANF--NVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAK 240
A QV + ++DN+++ K GG ++++ +V G+V+ + V G K +E AK
Sbjct: 186 VKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAK 245
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVG 300
+A+ ++ E + I++ Q++ + EE ++ + + +GA VI+ +
Sbjct: 246 IALIDASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGID 305
Query: 301 EMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA 360
E+A + + ++ ++ + K +L + R TG + + + + DLGY + ++G
Sbjct: 306 EVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGED 365
Query: 361 RVTIVRNEGGGNSVS-TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 419
++ V EG N S ++++RG + ++D+ ERA+ D + T + +D R + G A EI
Sbjct: 366 KMVFV--EGAKNPKSISILIRGGLERLVDETERALRDALGTVADVIKDGRAIAGGGAVEI 423
Query: 420 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479
E+A++L++++ + G +Q A+ +A + E + L ENAG + ++++ L + H + K
Sbjct: 424 EIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNK 483
Query: 480 -VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
GIDL G D+ V + + K A+K A +AA VLR+D V+
Sbjct: 484 WYGIDLYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVV 530
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 241 bits (616), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 151/507 (29%), Positives = 268/507 (52%), Gaps = 19/507 (3%)
Query: 31 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90
NI A K ++ RTSLGP GM+KM+ + + +TND ATI+ +++V HPAA++LV K
Sbjct: 16 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSK 75
Query: 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXXXXXXGS 150
AQ E GDG + AG +L +L++ G+HP+ I + KA+ K I S
Sbjct: 76 AQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM----S 131
Query: 151 ENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVC-PKNPANFNVDNVRVAK 208
+++ + E ++ ++ SK Q +L P+ DA ++V P + ++ ++++ K
Sbjct: 132 RPVELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVK 191
Query: 209 LLGGGLHNSTIVRGMVLKSDAVGS-IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQL 267
LGG + + +V G+VL S I +EKAK+ + + T+ +++ + Q+
Sbjct: 192 KLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDMDNQIVVSDYVQM 251
Query: 268 ENYAKTEEAKVEGLIKAVAESGAEVI-----VSGAAVGEMALHFCERYKLMVLKISSKFE 322
+ + E A + L+K + ++G V+ + A+ ++ALHF + K+MV+K + +
Sbjct: 252 DRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIERED 311
Query: 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIG----GARVTIVRNEGGGNSVSTVV 378
+ C+T G + + Q D LG + EE+ G + I G +V T+V
Sbjct: 312 IEFICKTIGTKPVAHVDQFTADMLGSAELA--EEVSLNGSGKLIKITGCASPGKTV-TIV 368
Query: 379 LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQY 438
+RGS ++++ ER++ D + + + + ++ G A EIELA RL E+S +G++ Y
Sbjct: 369 VRGSNKLVIEEAERSIHDALCVIRCLVKKRALIAGGGAPEIELALRLTEYSRTLSGMESY 428
Query: 439 AIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVW 498
I FA++ E++P TLAENAGLN + ++ L HA G+ GI++ G ++I V
Sbjct: 429 CIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGISNILEELVV 488
Query: 499 DLYVTKFFALKYAADAACTVLRVDQVL 525
+ AL A + ++L++D V+
Sbjct: 489 QPLLVSVSALTLATETVRSILKIDDVV 515
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 238 bits (608), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 152/527 (28%), Positives = 279/527 (52%), Gaps = 15/527 (2%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP +L E K G D A NI A + ++ R++LGP GM+KM+++ L +
Sbjct: 1 MSQQP----GVLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND TI+ E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +
Sbjct: 56 VVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNV 115
Query: 123 HPSEIISGYTKAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181
HP+ ++ GY A K G+++ ++ M + +E L
Sbjct: 116 HPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLA 171
Query: 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKA 239
+I +A V + + D +++ K G + ++ +++G+++ + V + K + A
Sbjct: 172 EIIVEAVSAVVD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDA 230
Query: 240 KVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV 299
K+A+ ++ TET + I + +L + + EE ++ ++ + SGA V+ +
Sbjct: 231 KIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI 290
Query: 300 GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG 359
++A H+ + ++ + K ++ + + TGA + + + DLG V +I G
Sbjct: 291 DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISG 350
Query: 360 ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 419
+ V +V T+++RG+T+ +++++ RAVDD V D RIV G +TE+
Sbjct: 351 DSMIFVEECKHPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 409
Query: 420 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479
EL+ +L+E++ +G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K
Sbjct: 410 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK 469
Query: 480 -VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
G+++ G D+ V + K A++ AA++ +LR+D V+
Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 516
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 152/527 (28%), Positives = 279/527 (52%), Gaps = 15/527 (2%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP +L E K G D A NI A + ++ R++LGP GM+KM+++ L +
Sbjct: 1 MSQQP----GVLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND TI+ E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +
Sbjct: 56 VVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNV 115
Query: 123 HPSEIISGYTKAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181
HP+ ++ GY A K G+++ ++ M + +E L
Sbjct: 116 HPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLA 171
Query: 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKA 239
+I +A V + + D +++ K G + ++ +++G+++ + V + K + A
Sbjct: 172 EIIVEAVSAVVD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDA 230
Query: 240 KVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV 299
K+A+ ++ TET + I + +L + + EE ++ ++ + SGA V+ +
Sbjct: 231 KIALLNCAIEIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGI 290
Query: 300 GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG 359
++A H+ + ++ + K ++ + + TGA + + + DLG V +I G
Sbjct: 291 DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISG 350
Query: 360 ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 419
+ V +V T+++RG+T+ +++++ RAVDD V D RIV G +TE+
Sbjct: 351 DSMIFVEECKHPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 409
Query: 420 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479
EL+ +L+E++ +G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K
Sbjct: 410 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK 469
Query: 480 -VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
G+++ G D+ V + K A++ AA++ +LR+D V+
Sbjct: 470 CAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 516
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 236 bits (603), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/517 (28%), Positives = 276/517 (53%), Gaps = 11/517 (2%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+L E K G D A NI A + ++ R++LGP GM+KM+++ L + VTND TI+
Sbjct: 1 VLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTIL 59
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +HP+ ++ GY
Sbjct: 60 REMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQ 119
Query: 133 KAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 191
A K G+++ ++ M + +E L +I +A V
Sbjct: 120 AAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLAEIIVEAVSAV 175
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVD 249
+ + D +++ K G + ++ +++G+++ + V + K + AK+A+ ++
Sbjct: 176 VD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE 234
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
TET + I + +L + + EE ++ ++ + SGA V+ + ++A H+ +
Sbjct: 235 IKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 294
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG 369
++ + K ++ + + TGA + + + DLG V +I G + V
Sbjct: 295 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 354
Query: 370 GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429
+V T+++RG+T+ +++++ RAVDD V D RIV G +TE+EL+ +L+E++
Sbjct: 355 HPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
Query: 430 FKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-VGIDLENGV 488
+G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K G+++ G
Sbjct: 414 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 473
Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ V + K A++ AA++ +LR+D V+
Sbjct: 474 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/517 (28%), Positives = 276/517 (53%), Gaps = 11/517 (2%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+L E K G D A NI A + ++ R++LGP GM+KM+++ L + VTND TI+
Sbjct: 1 VLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTIL 59
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +HP+ ++ GY
Sbjct: 60 REMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQ 119
Query: 133 KAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 191
A K G+++ ++ M + +E L +I +A V
Sbjct: 120 AAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLAEIIVEAVSAV 175
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVD 249
+ + D +++ K G + ++ +++G+++ + V + K + AK+A+ ++
Sbjct: 176 VD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE 234
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
TET + I + +L + + EE ++ ++ + SGA V+ + ++A H+ +
Sbjct: 235 IKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 294
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG 369
++ + K ++ + + TGA + + + DLG V +I G + V
Sbjct: 295 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECK 354
Query: 370 GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429
+V T+++RG+T+ +++++ RAVDD V D RIV G +TE+EL+ +L+E++
Sbjct: 355 HPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 413
Query: 430 FKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-VGIDLENGV 488
+G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K G+++ G
Sbjct: 414 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 473
Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ V + K A++ AA++ +LR+D V+
Sbjct: 474 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 510
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 221 bits (564), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 150/520 (28%), Positives = 269/520 (51%), Gaps = 15/520 (2%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+LKEG K SG D A+ +NI+A +S R+SLGP GM+KM+++ L + +TND TI+
Sbjct: 9 ILKEGTKRESGKD-AMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTIL 67
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E++V+HPAAK++V K Q +GDG + AG +LQ A+ LI +HP+ I GY
Sbjct: 68 KEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYR 127
Query: 133 KA---INKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACI 189
A + I + + ++ + + A+VA + L + +A
Sbjct: 128 MASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKSASVAKDK------LAEISYEAVK 181
Query: 190 QVCPKNPANFNV--DNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245
V + V DN++V K GG + ++ ++ G+++ + V G ++ AK+A+
Sbjct: 182 SVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLD 241
Query: 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALH 305
++ E + I + ++ + EE + ++ + GA V+++ + +MA H
Sbjct: 242 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQH 301
Query: 306 FCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIV 365
+ R + ++ K ++ + + TGA + + + + DLG + V ++G +T V
Sbjct: 302 YLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFV 361
Query: 366 RNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRL 425
+VS +++RG T+ ++D++ER++ D ++ + D G AT E+A RL
Sbjct: 362 TGCKNPKAVS-ILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRL 420
Query: 426 KEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485
+ ++ K G Q AI KFA++ E +P+ LAENAGL+ ++I+ L AEHA G GI++
Sbjct: 421 RSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVF 480
Query: 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
G D+ V + A++ A +AA +LR+D V+
Sbjct: 481 TGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVI 520
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/527 (27%), Positives = 271/527 (51%), Gaps = 37/527 (7%)
Query: 3 FSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKL 62
S QP +L E K G D A NI A + ++ R++LGP GM+KM+++ L +
Sbjct: 1 MSQQP----GVLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDV 55
Query: 63 FVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGL 122
VTND TI+ E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +
Sbjct: 56 VVTNDGVTILREMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNV 115
Query: 123 HPSEIISGYTKAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181
HP+ ++ GY A K G+++ ++ M + +E L
Sbjct: 116 HPTIVVKGYQAAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLA 171
Query: 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKA 239
+I +A V + + D +++ K G + ++ +++G+++ + V + K + A
Sbjct: 172 EIIVEAVSAVVD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDA 230
Query: 240 KVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV 299
K+A+ ++ +A+E ++ ++ + SGA V+ +
Sbjct: 231 KIALLNCAIEETASEM----------------------LKDMVAEIKASGANVLFCQKGI 268
Query: 300 GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG 359
++A H+ + ++ + K ++ + + TGA + + + DLG V +I G
Sbjct: 269 DDLAQHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISG 328
Query: 360 ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 419
+ V +V T+++RG+T+ +++++ RAVDD V D RIV G +TE+
Sbjct: 329 DSMIFVEECKHPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEV 387
Query: 420 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479
EL+ +L+E++ +G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K
Sbjct: 388 ELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNK 447
Query: 480 -VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
G+++ G D+ V + K A++ AA++ +LR+D V+
Sbjct: 448 CAGLNVFTGAVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 494
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 218 bits (555), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 144/517 (27%), Positives = 268/517 (51%), Gaps = 33/517 (6%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+L E K G D A NI A + ++ R++LGP GM+KM+++ L + VTND TI+
Sbjct: 1 VLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTIL 59
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +HP+ ++ GY
Sbjct: 60 REMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQ 119
Query: 133 KAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 191
A K G+++ ++ M + +E L +I +A V
Sbjct: 120 AAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLAEIIVEAVSAV 175
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVD 249
+ + D +++ K G + ++ +++G+++ + V + K + AK+A+ ++
Sbjct: 176 VD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE 234
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
+A+E ++ ++ + SGA V+ + ++A H+ +
Sbjct: 235 ETASEM----------------------LKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG 369
++ + K ++ + + TGA + + + DLG V +I G + V
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECK 332
Query: 370 GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429
+V T+++RG+T+ +++++ RAVDD V D RIV G +TE+EL+ +L+E++
Sbjct: 333 HPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 430 FKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-VGIDLENGV 488
+G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K G+++ G
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ V + K A++ AA++ +LR+D V+
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 218 bits (555), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 144/517 (27%), Positives = 268/517 (51%), Gaps = 33/517 (6%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+L E K G D A NI A + ++ R++LGP GM+KM+++ L + VTND TI+
Sbjct: 1 VLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTIL 59
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +HP+ ++ GY
Sbjct: 60 REMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQ 119
Query: 133 KAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 191
A K G+++ ++ M + +E L +I +A V
Sbjct: 120 AAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLAEIIVEAVSAV 175
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVD 249
+ + D +++ K G + ++ +++G+++ + V + K + AK+A+ ++
Sbjct: 176 VD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE 234
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
+A+E ++ ++ + SGA V+ + ++A H+ +
Sbjct: 235 ETASEM----------------------LKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG 369
++ + K ++ + + TGA + + + DLG V +I G + V
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECK 332
Query: 370 GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429
+V T+++RG+T+ +++++ RAVDD V D RIV G +TE+EL+ +L+E++
Sbjct: 333 HPKAV-TMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 430 FKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-VGIDLENGV 488
+G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K G+++ G
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ V + K A++ AA++ +LR+D V+
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|L Chain L, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|DD Chain d, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|LL Chain l, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|D Chain D, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|L Chain L, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|DD Chain d, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|LL Chain l, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 528
Score = 215 bits (547), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 136/513 (26%), Positives = 266/513 (51%), Gaps = 31/513 (6%)
Query: 31 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90
NI A + ++ RTSLGP GM+KM+ ++ ++ND TI+ ++ + HP A++LV
Sbjct: 24 NIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSA 83
Query: 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXXXXXXGS 150
AQ E GDG + G +L AE L+ G+HP+ I + A +++
Sbjct: 84 AQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEM----C 139
Query: 151 ENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKNPANFNVDNVRVAKL 209
+ + + E+++ +++SK Q L PL D+ +++ +N N +++++R+ K
Sbjct: 140 HKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKK 199
Query: 210 LGGGLHNSTIVRGMVLKSDAV---GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQ 266
+GG + ++ ++ G+VL A+ G EKAK+ + + +T+ +++++ Q
Sbjct: 200 VGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPKPDTENNIIVNDYRQ 259
Query: 267 LENYAKTEEAKVEGLIKAVAESGAEVI-----VSGAAVGEMALHFCERYKLMVLKISSKF 321
++ K E A + + K + ++ V+ + AV ++ALHF + +MV+K +
Sbjct: 260 MDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIERE 319
Query: 322 ELRRFCRTTGAVAMLKLCQPNPD-DLGYVDSVS----VEEIGG-----ARVTIVRNEGGG 371
E+ + G C+P D +L D + VEEI RVT +RN
Sbjct: 320 EIEFLSKGLG-------CKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNAR 372
Query: 372 NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFK 431
+VS VV+RG+ + I+D+ ER++ D + + + ++ ++ G A EIE++RRL + +
Sbjct: 373 PTVS-VVIRGANNMIIDETERSLHDALCVIRCLVKERGLIAGGGAPEIEISRRLSKEARS 431
Query: 432 ETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCAD 491
G+ + +FA + E++P TLAENAGLN++++++ L ++H +G+ GI + +
Sbjct: 432 MEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGISVRRSGTTN 491
Query: 492 ISTMNVWDLYVTKFFALKYAADAACTVLRVDQV 524
++ + A+ A++ ++LR+D +
Sbjct: 492 TYEEHILQPVLVSTSAITLASECVKSILRIDDI 524
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 143/517 (27%), Positives = 267/517 (51%), Gaps = 33/517 (6%)
Query: 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIV 72
+L E K G D A NI A + ++ R++LGP GM+KM+++ L + VTND TI+
Sbjct: 1 VLPENMKRYMGRD-AQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTIL 59
Query: 73 NELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYT 132
E+ V+HPAAK+L+ K Q++E+GDG + AGE+L+ AEEL+ +HP+ ++ GY
Sbjct: 60 REMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQ 119
Query: 133 KAINKTIXXXXXXX-XXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 191
A K G+++ ++ M + +E L +I +A V
Sbjct: 120 AAAQKAQELLKTIACEVGAQDKEILTK----IAMTSITGKGAEKAKEKLAEIIVEAVSAV 175
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVD 249
+ + D +++ K G + ++ +++G+++ + V + K + AK+A+ ++
Sbjct: 176 VD-DEGKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAIE 234
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
+A+E ++ ++ + SGA V+ + ++A H+ +
Sbjct: 235 ETASEM----------------------LKDMVAEIKASGANVLFCQKGIDDLAQHYLAK 272
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG 369
++ + K ++ + + TGA + + + DLG V +I G + V
Sbjct: 273 EGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKISGDSMIFVEECK 332
Query: 370 GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFS 429
+V T+++RG+T+ +++++ RAVD V D RIV G +TE+EL+ +L+E++
Sbjct: 333 HPKAV-TMLIRGTTEHVIEEVARAVDAAVGVVGCTIEDGRIVSGGGSTEVELSMKLREYA 391
Query: 430 FKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-VGIDLENGV 488
+G +Q A+ FA++ E++P+TLAENAGL+A+EI+ + A HAS K G+++ G
Sbjct: 392 EGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTGA 451
Query: 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ V + K A++ AA++ +LR+D V+
Sbjct: 452 VEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVI 488
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/520 (26%), Positives = 260/520 (50%), Gaps = 26/520 (5%)
Query: 17 GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELE 76
G K SG NI+A K ++ I RT LGP M KM+++ + + +TND I+ E++
Sbjct: 7 GRKVQSG-------NINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQ 59
Query: 77 VQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 136
VQHPAAK ++ + Q EE+GDG I AGE+L AE + +HP+ +IS Y KA++
Sbjct: 60 VQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALD 119
Query: 137 KTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL-CPLIADACIQVCPKN 195
I S +D N + ++ + +++ +K + L C + DA V +
Sbjct: 120 DMISTLKKI----SIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQFEE 175
Query: 196 PANFNVD---NVRVAKLLGGGLHNSTIVRGMVLKSDAVGS-----IKNMEKAKVAVFAGG 247
+D RV K+ GG + +S ++RG+++ D IKN ++ +
Sbjct: 176 NGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKN---PRIVLLDSS 232
Query: 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFC 307
++ E++ + I E + EE ++ L + + + +V+++ + ++A H+
Sbjct: 233 LEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYL 292
Query: 308 ERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVR 366
R + ++ K + R R GA + + + +D+G + +++IG T +
Sbjct: 293 MRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFI- 351
Query: 367 NEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLK 426
E T++LRG++ IL ++ER + D + + + D ++VPG A+E+ +A L
Sbjct: 352 TECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALT 411
Query: 427 EFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV-GIDLE 485
E S TG++Q+ A++ E++P+TL +N G + + +++SL A+H + G++ E
Sbjct: 412 EKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGE 471
Query: 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
G D+ + +W+ K K A + A +LR+D ++
Sbjct: 472 TGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIV 511
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 213 bits (542), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/483 (29%), Positives = 248/483 (51%), Gaps = 21/483 (4%)
Query: 54 MVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQG 113
M+++ + + +TND ATI+ E+++QHPAAK++V K Q E+GDG +GE+L
Sbjct: 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSK 60
Query: 114 AEELIRMGLHPSEIISGYTKAINKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQ 173
AEELI G+H + I GY A K S + +E A A
Sbjct: 61 AEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPD------DEAALIKIAGTAITG 114
Query: 174 FGQE---EILCPLIADACIQVCPKNPANFNV---DNVRVAKLLGGGLHNSTIVRGMVLKS 227
G E E L L A + + V +N+++ K GG + +S ++ G+V+
Sbjct: 115 KGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVI-- 172
Query: 228 DAVGSIKNM----EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIK 283
D S NM E AK+ + + V+ TE + I + Q++ + EE + + +
Sbjct: 173 DKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAE 232
Query: 284 AVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNP 343
V SGA V+ + +MA ++ E+ + ++ K +L+R + TGA + L Q
Sbjct: 233 KVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITT 292
Query: 344 DDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS-TVVLRGSTDSILDDLERAVDDGVNTYK 402
+D+G V +E+ G ++T V G NS + TV+L G T+ ++D L+ A++D ++
Sbjct: 293 EDVGTAGLVEEKEVRGGKMTYVT--GCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVG 350
Query: 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNA 462
+ D ++V G ++E+EL+ RL E++ G +Q A++KFAE+ E++P LAENAGL+
Sbjct: 351 VVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEALEVIPVALAENAGLDP 410
Query: 463 MEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVD 522
++I+ L ++H G G+++ G D+ +V + K A+ A +A +LR+D
Sbjct: 411 IDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRID 470
Query: 523 QVL 525
V+
Sbjct: 471 DVV 473
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 213 bits (541), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 151/527 (28%), Positives = 267/527 (50%), Gaps = 44/527 (8%)
Query: 30 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89
+N+ A ++ I ++SLGP G++KM+++ + + +TND ATI+ LEV+HPAAK+L
Sbjct: 14 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELA 73
Query: 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXXXXXXG 149
Q +E+GDG + A E+L+ A+EL++ +HP+ +ISGY A + +
Sbjct: 74 DLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI------- 126
Query: 150 SENMDVRNTEE-----VIYRMKAAVASKQFG-QEEILCPLIADACIQV-------CPKNP 196
SEN+ + NT+E +I K +++SK G + L+ DA + + P+ P
Sbjct: 127 SENL-IINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAIKYTDIRGQPRYP 185
Query: 197 ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGS---IKNMEKAKVAVFAGGVDTSAT 253
N ++ V K G S ++ G L VGS K + AK+A + +
Sbjct: 186 VN----SINVLKAHGRSQMESMLINGYALNC-VVGSQGMPKRIVNAKIACLDFSLQKTKM 240
Query: 254 ETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLM 313
+ V+I + E+L+ + E + I+ + +GA VI++ + +M L + M
Sbjct: 241 KLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAM 300
Query: 314 VLKISSKFELRRFCRTTGAVAMLKLCQPNPDD------LGYVDSVSVEEIGGARVTIVRN 367
++ K +L+R + +GA + L ++ LG + V E I + +++N
Sbjct: 301 AVRRVLKRDLKRIAKASGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKN 360
Query: 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKE 427
S S V+LRG+ D + D++ER++ D + K + +VPG A E L+ L+
Sbjct: 361 TKARTSAS-VILRGANDFMCDEMERSLHDALCVVKRVLESKSVVPGGGAVEAALSIYLEN 419
Query: 428 FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK-------- 479
++ +Q AIA+FA S ++P TLA NA ++ ++++ L A H +
Sbjct: 420 YATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKW 479
Query: 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLK 526
+G+DL NG D V++ + K +LK+A +AA T+LR+D ++K
Sbjct: 480 IGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 526
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 156/547 (28%), Positives = 270/547 (49%), Gaps = 55/547 (10%)
Query: 17 GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELE 76
G + +SG D+ +N+ A ++ + ++SLGP G++KM+++ + VTND ATI++ L+
Sbjct: 16 GGEKISG-DDIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLD 74
Query: 77 VQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 136
VQHPA K+LV + Q EIGDG + A E+L+ A EL++ +HP+ II+G+ A+
Sbjct: 75 VQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALR 134
Query: 137 KTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADACIQVCPKN 195
+ I S ++D E +I K +++SK G + + ++ DA + V +N
Sbjct: 135 EAIRFINEVL---STSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAVKTQN 191
Query: 196 PA---NFNVDNVRVAKLLGGGLHNSTIVRGMVL----------KSDAVGSIK------NM 236
+ V V V K G S +V G L K A G++K N+
Sbjct: 192 SKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAGGNVKIACLDLNL 251
Query: 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSG 296
+KA++A+ GV + I + EQLE K E V +K + ++GA+V+++
Sbjct: 252 QKARMAM---GVQIN---------IDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTT 299
Query: 297 AAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDD------LGYVD 350
+ ++ L K+M ++ K +LRR R TGA + + ++ LG D
Sbjct: 300 KGIDDLCLKEFVEAKIMGVRRCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCD 359
Query: 351 SVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410
V + +++ +S S+++LRG+ D LD++ER++ D ++ K +
Sbjct: 360 EVVQAKFSDDECILIKGT-SKHSSSSIILRGANDYSLDEMERSLHDSLSVVKRTLESGNV 418
Query: 411 VPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLY 470
VPG E L L F+ +Q AIA+FA + ++PKTLA NA ++ E+++ L
Sbjct: 419 VPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLR 478
Query: 471 AEHASGKT------------KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTV 518
+ HA+ + G+DL G D V + ++K +LK A +A +
Sbjct: 479 SYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAI 538
Query: 519 LRVDQVL 525
LR+D ++
Sbjct: 539 LRIDTMI 545
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/506 (26%), Positives = 253/506 (50%), Gaps = 7/506 (1%)
Query: 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLL 85
EA+ +I A K ++ +TSLGPNG++KM+++ + VTND ATI++ ++V H AKL+
Sbjct: 10 EALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLM 69
Query: 86 VLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXXX 145
V K+Q +EIGDG + AG +L+ AE+L+ G+HP I GY +A I
Sbjct: 70 VELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR--IAIEHLD 127
Query: 146 XXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKNPANFNVDNV 204
S +D++NTE +I K + SK + + +A + V + + + +
Sbjct: 128 KISDSVLVDMKNTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTVADMQRRDVDFELI 187
Query: 205 RVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVDTSATETKGTVLIH 262
+V +GG L ++ +++G+++ D K +E AK+A+ + +TK + +
Sbjct: 188 KVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKLDVT 247
Query: 263 NAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE 322
+ E + K E+ K E +I+ + E+GA + V + A H + L ++ E
Sbjct: 248 SVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPE 307
Query: 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVS-TVVLRG 381
+ TG + + + + LG+ V G + ++ E NS + T+ +RG
Sbjct: 308 IELIAIATGGRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAVTIFIRG 367
Query: 382 STDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 441
I+++ +R++ D + + + RD+R+V G A EI A + + + K L+QYA+
Sbjct: 368 GNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMR 427
Query: 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDLENGVCADISTMNVWDL 500
FA++ E++P LAEN+G+N ++ ++ + A +GID + D+ +V +
Sbjct: 428 AFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDMKHQHVIET 487
Query: 501 YVTKFFALKYAADAACTVLRVDQVLK 526
+ K + A +L++D + K
Sbjct: 488 LIGKKQQISLATQMVRMILKIDDIRK 513
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 196 bits (497), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 136/520 (26%), Positives = 247/520 (47%), Gaps = 14/520 (2%)
Query: 15 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNE 74
KEG G+ + V NI AC+ ++ RT+LGP GM+K++++ K ++ND ATI+
Sbjct: 1 KEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKL 59
Query: 75 LEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 134
L+V HPAAK LV K+Q E+GDG A E L+ + + GLHP II + A
Sbjct: 60 LDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 119
Query: 135 INKTIXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEE-ILCPLIADACIQVCP 193
+ + V + + A++SK Q++ ++ DA + +
Sbjct: 120 TQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMML-- 177
Query: 194 KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK-----VAVFAGGV 248
+ + + K+ GG L S +V G+ K + M+ K +A+ +
Sbjct: 178 --DDLLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVEL 235
Query: 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMAL-HFC 307
+ A + + +H E + E + ++ + SGA+V++S +G++A +F
Sbjct: 236 ELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFA 295
Query: 308 ERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRN 367
+R ++ + +L+R G + + D LG +IGG R
Sbjct: 296 DRDMFCAGRVPEE-DLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTG 354
Query: 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKE 427
+ T++LRG + +++ ER++ D + + ++ +V G A E+EL++ L++
Sbjct: 355 CPKAKTC-TIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRD 413
Query: 428 FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 487
+S G Q I +A++ E++P+ L +NAG +A I++ L A HA G G+D+
Sbjct: 414 YSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDINTE 473
Query: 488 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527
AD VW+ + + AL A++AAC ++ VD+ +K+
Sbjct: 474 DIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKN 513
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 139/519 (26%), Positives = 263/519 (50%), Gaps = 14/519 (2%)
Query: 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQ 78
K GL EA +I A + +++I +TSLGP G++K++I+ ++ +TND ATI++++E+
Sbjct: 39 KRQHGL-EAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELD 97
Query: 79 HPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKT 138
+ AKLLV K+Q +EIGDG + A +L A ELI+ G+HP +I +G+ +A
Sbjct: 98 NEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLA 157
Query: 139 IXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADACIQVCPKNPA 197
I S + D + ++ K ++ SK ++ + + +A I V K+
Sbjct: 158 ISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSKDHDRFAEMAVEAVINVMDKDRK 217
Query: 198 NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSD--------AVGSIKNMEKAKVAVFAGGVD 249
+ + D +++ +GG + +S ++ G++L D V + + K+A+ +
Sbjct: 218 DVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFE 277
Query: 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER 309
+TK + I + E+ + E+ K + +I V ++GA+V++ + A H +
Sbjct: 278 PPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQ 337
Query: 310 YKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGA--RVTIVRN 367
L ++ EL +T + + + D LG + +E G R+ I+
Sbjct: 338 NDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQ 397
Query: 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKE 427
+V T +RGS I+D+ ERA+ D + + + +DSR+V G A E+ ++ + E
Sbjct: 398 SKETKTV-TCFVRGSNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAEVTMSLAVSE 456
Query: 428 FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGIDLEN 486
+ K+ G+DQYA FA++ + +P TLAEN+GL+ + +S+L ++ K + +G+D
Sbjct: 457 EADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLG 516
Query: 487 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVL 525
D+ + V D ++ K + A +L++D V+
Sbjct: 517 YGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVI 555
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 135/535 (25%), Positives = 246/535 (45%), Gaps = 17/535 (3%)
Query: 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 60
M F Q I +LKEG G + ++ NI+AC + + +LGP G + +++
Sbjct: 1 MNFGSQTPTI-VVLKEGTDASQGKGQ-IISNINACVAVQEALKPTLGPLGSDILIVTSNQ 58
Query: 61 KLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRM 120
K ++ND ATI+ L+V HPAAK LV +AQ E+GDG AGE+++ A+ +
Sbjct: 59 KTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEE 118
Query: 121 GLHPSEIISGYTKAINKTIXXXXXXXX-XGSENMDVRNTEEVIYR-MKAAVASKQF-GQE 177
G+ I+ GY KA++ + SE R E++ R + A++SK
Sbjct: 119 GISSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGR---ELLERCARTAMSSKLIHNNA 175
Query: 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLK-----SDAVGS 232
+ + DA + + + + + + + K+ GG + S + G+ K +
Sbjct: 176 DFFVKMCVDAVLSL---DRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQ 232
Query: 233 IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEV 292
K K+ ++ A + V + + E + E + ++ V E+GA +
Sbjct: 233 PKKFNNPKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANI 292
Query: 293 IVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSV 352
++S +G++A F + S ++ R + G P+ LG
Sbjct: 293 VLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALF 352
Query: 353 SVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVP 412
+IG R + + + T++LRG + ++ ++ER++ D + K ++ IV
Sbjct: 353 EEMQIGSERYNLFQGCPQAKTC-TLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVA 411
Query: 413 GAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAE 472
G ATE+E+++ L+++S G Q I FA++ E++P+ L ENAG +A+EI++ L
Sbjct: 412 GGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLA 471
Query: 473 HASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527
H+ G+ G+ E D VW+ + K AL A +A +L VD+ + +
Sbjct: 472 HSKGEKWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITN 526
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 132/494 (26%), Positives = 246/494 (49%), Gaps = 17/494 (3%)
Query: 41 ITRTSLGPNGMNKMVIN--HLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98
+ +++LGP GM+K++++ L VTND ATI+ + V +PAAK+LV + Q +E+GD
Sbjct: 25 LVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGD 84
Query: 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGY---TKAINKTIXXXXXXXXXGSENMDV 155
G A E+L+ AE LI +HP II+G+ TKA + + GS+ +
Sbjct: 85 GTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDH--GSDEVKF 142
Query: 156 RNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL 214
R ++++ ++SK ++ L +A +++ + N++ + V K LGG L
Sbjct: 143 R--QDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRL----KGSGNLEAIHVIKKLGGSL 196
Query: 215 HNSTIVRGMVL-KSDAVGSIKNMEKAKVAVFAGGVDTSATETKGT-VLIHNAEQLENYAK 272
+S + G +L K V K +E AK+ + G+DT + G+ V + + ++
Sbjct: 197 ADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTDKIKIFGSRVRVDSTAKVAEIEH 256
Query: 273 TEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332
E+ K++ ++ + + G ++ + +M ++ + + R TG
Sbjct: 257 AEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGG 316
Query: 333 VAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLER 392
P LG + IG ++ G + T+VLRG+T ILD+ ER
Sbjct: 317 EIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVALGEAC-TIVLRGATQQILDEAER 375
Query: 393 AVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPK 452
++ D + +DSR V G +E+ +A + + + + G + A+ +A++ M+P
Sbjct: 376 SLHDALCVLAQTVKDSRTVYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPT 435
Query: 453 TLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAA 512
+A+NAG ++ ++++ L A H+ GKT G+D++ G D+S + + + + K L AA
Sbjct: 436 IIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIGDMSVLGITESFQVKRQVLLSAA 495
Query: 513 DAACTVLRVDQVLK 526
+AA +LRVD ++K
Sbjct: 496 EAAEVILRVDNIIK 509
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 169 bits (428), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 244/493 (49%), Gaps = 15/493 (3%)
Query: 41 ITRTSLGPNGMNKMVIN-HLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99
+ +++LGP GM+K++ + + VTND ATI+ + + +PAAK+LV K Q +E+GDG
Sbjct: 32 LVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISKVQDDEVGDG 91
Query: 100 ANLTISFAGEILQGAEELI-RMGLHPSEIISGYTKAINKTIXXXXXXXXXGSENMDVRNT 158
+ E+L+ AE+LI + +HP II GY A + S + +
Sbjct: 92 TTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDNSHDKTMFR- 150
Query: 159 EEVIYRMKAAVASKQFGQE-EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS 217
E++I+ K ++SK Q+ + L +A +++ + N++++++ K+LGG L +S
Sbjct: 151 EDLIHIAKTTLSSKILSQDKDHFAELATNAILRL----KGSTNLEHIQIIKILGGKLSDS 206
Query: 218 TIVRGMVL-KSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVL-IHNAEQLENYAKTEE 275
+ G +L K K +E AK+ + +DT + GT + + +L K E
Sbjct: 207 FLDEGFILAKKFGNNQPKRIENAKILIANTTLDTDKVKIFGTKFKVDSTAKLAQLEKAER 266
Query: 276 AKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE-LRRFCRTTGAVA 334
K++ I +++ G ++ + + + ++ + FE + R TG
Sbjct: 267 EKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIE-HADFEGVERLALVTGGEV 325
Query: 335 MLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG-GGNSVSTVVLRGSTDSILDDLERA 393
+ +P+ LG D + EEI ++ G T+VLRG+TD LD+ ER+
Sbjct: 326 VSTFDEPSKCKLGECDVI--EEIMLGEQPFLKFSGCKAGEACTIVLRGATDQTLDEAERS 383
Query: 394 VDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKT 453
+ D ++ +++R V G E+ +++ + + G A+ FA + +P
Sbjct: 384 LHDALSVLSQTTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTI 443
Query: 454 LAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAAD 513
LA+NAG ++ E++S L + +G + G+DL NG AD+ + + + Y K + A++
Sbjct: 444 LADNAGFDSSELVSKLRSSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASE 503
Query: 514 AACTVLRVDQVLK 526
AA +LRVD +++
Sbjct: 504 AAEVLLRVDNIIR 516
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 132/527 (25%), Positives = 248/527 (47%), Gaps = 32/527 (6%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKL 84
D A+ N+ + + L ++ T+LGP G KM+++ + +T D ++ E+++Q P A L
Sbjct: 16 DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVL 75
Query: 85 LVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXX 144
+ A AQ E GDG + GE+L+ A I+ G+HP I G+ A +++
Sbjct: 76 IARAAAAQDEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDE 135
Query: 145 XXXXGSENMDVRNTEEVIYRM-KAAVASK-QFGQEEILCPLIADACIQVCPKNPANFNVD 202
+ ++ N E + ++ ++++ +K E+L P++ DA + V N ++
Sbjct: 136 FKISKT---NLSNDREFLLQVARSSLLTKVDADLTEVLTPIVTDAVLSVYDAQADNLDLH 192
Query: 203 NVRVAKLLGGGLHNSTIVRGMVL-----KSDAVGSIKNMEKAKVAVFAGGVDTSATETKG 257
V + ++ ++T ++G+VL D +KN A V + ++ TE
Sbjct: 193 MVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKN---AYVLILNVSLEYEKTEVNS 249
Query: 258 TVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE----------VIVSGAAVGEMALHFC 307
+A+Q + A +E V+ +K + + E VI++ + M+L
Sbjct: 250 GFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVF 309
Query: 308 ERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRN 367
++ ++ L+ + + + R TG A + +P LG+ V E IG + T V
Sbjct: 310 AKHNILALRRAKRRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYV-T 368
Query: 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKE 427
E T++++GST L + AV DG+ + +D I+PGA A I L+R L+
Sbjct: 369 ENTDPKSCTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGAFYIALSRYLRS 428
Query: 428 FSFKETGLD---QYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAE----HASGKTK- 479
+ + G + I FAE+ ++PKTL +N+G + +++++ + E S +T+
Sbjct: 429 ANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDAQDSDETRY 488
Query: 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLK 526
VG+DL G D + +WD Y A+ A A +L D++L+
Sbjct: 489 VGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLR 535
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 166 bits (420), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 126/508 (24%), Positives = 231/508 (45%), Gaps = 19/508 (3%)
Query: 31 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90
NI A + L + RT+LGP G KM+++ + +T D +++E+++QHP A L+
Sbjct: 15 NISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVAT 74
Query: 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIXXXXXXXXXGS 150
AQ + GDG + GE+L+ A+ I GLHP I G+ A K + S
Sbjct: 75 AQDDITGDGTTSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKV--S 132
Query: 151 ENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKNPANFNVDNVRVAKL 209
+ MD E +I + ++ +K + ++L + D+ + + K ++ V + ++
Sbjct: 133 KEMD---RETLIDVARTSLRTKVHAELADVLTEAVVDSILAI-KKQDEPIDLFMVEIMEM 188
Query: 210 LGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQL 267
+++++RG+VL A K +E A + ++ TE +AE+
Sbjct: 189 KHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEER 248
Query: 268 ENYAKTEEAKVEGLIKAVAESGAEV---------IVSGAAVGEMALHFCERYKLMVLKIS 318
E K E +E +K + E +V +++ + +L + ++ L+ +
Sbjct: 249 EKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRA 308
Query: 319 SKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVV 378
+ + R G +A+ L NPD L V +G + T + SV T++
Sbjct: 309 KRRNMERLTLACGGIALNSLDDLNPDCLLGHAGVYEYTLGEEKFTFIEKCNNPRSV-TLL 367
Query: 379 LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQY 438
++G L ++ A+ DG+ K D +VPGA A E+ +A L ++ G Q
Sbjct: 368 IKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQL 427
Query: 439 AIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVW 498
+ FA++ ++PK LA+N+G + E + + AEH+ VG+DL G + +W
Sbjct: 428 GVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGEPMVAAEAGIW 487
Query: 499 DLYVTKFFALKYAADAACTVLRVDQVLK 526
D Y K L A +L VD++++
Sbjct: 488 DNYCVKKQLLHSCTVIATNILLVDEIMR 515
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 163/335 (48%), Gaps = 17/335 (5%)
Query: 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLL 85
+A + NI A K ++ + RT LGP M KM+++ + L +TND I+ E++V HPAAK +
Sbjct: 19 QAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSM 78
Query: 86 VLAGKAQQEEIGDGANLTISFAGEIL-QGAEELIRMGLHPSEIISGYTKAINKTIXXXXX 144
+ + Q EE+GDG I AGEIL Q A LI +HP II KA+ +
Sbjct: 79 LELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQ 138
Query: 145 XXXXGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQV------CPKNPA 197
S+ +DV N + ++A++ +K E +C L DA V +
Sbjct: 139 V----SKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEP 194
Query: 198 NFNVD---NVRVAKLLGGGLHNSTIVRGMVLKSDAVGS--IKNMEKAKVAVFAGGVDTSA 252
NF +D VRV K+ GG + +S +++G++L D V +++E +V + ++
Sbjct: 195 NFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKK 254
Query: 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL 312
E++ + I E + EE +V+ + + + ++++ V ++A H+ +
Sbjct: 255 GESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGC 314
Query: 313 MVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLG 347
VL+ K + R R TGA + ++ D+G
Sbjct: 315 SVLRRVKKSDNNRIARVTGATIVNRVEDLKESDVG 349
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 89/150 (59%)
Query: 376 TVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGL 435
T++LRG + IL++++R + D + + + + PG ATE+ ++ +L E + + G+
Sbjct: 434 TIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEGI 493
Query: 436 DQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTM 495
Q+ A++ E +P+TL +NAG + + ++S L A+HA G GID + G D+ +
Sbjct: 494 QQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSY 553
Query: 496 NVWDLYVTKFFALKYAADAACTVLRVDQVL 525
+W+ V K ++K A ++AC +LRVD ++
Sbjct: 554 GIWEPEVIKQQSVKTAIESACLLLRVDDIV 583
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 8/149 (5%)
Query: 222 GMVLKSDAVGS-----IKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEA 276
G+V+ + V S +KN AK+A+ ++ TE + V I + +++++ E
Sbjct: 3 GIVIDKEKVHSKMPDVVKN---AKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETN 59
Query: 277 KVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAML 336
+ +++ + +SGA V++ + ++A H+ + + ++ K ++ + + TGA +
Sbjct: 60 TFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVT 119
Query: 337 KLCQPNPDDLGYVDSVSVEEIGGARVTIV 365
L P LG ++V +IG R+T V
Sbjct: 120 DLDDLTPSVLGEAETVEERKIGDDRMTFV 148
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 59/127 (46%)
Query: 239 AKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAA 298
AK+A+ ++ E + I + ++ + EE + ++ + GA V+++
Sbjct: 22 AKIALLDAPLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKG 81
Query: 299 VGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIG 358
+ +MA H+ R + ++ K ++ + + TGA + + + + DLG + V ++G
Sbjct: 82 IDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVG 141
Query: 359 GARVTIV 365
+T V
Sbjct: 142 EDYMTFV 148
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
pdb|3RTK|B Chain B, Crystal Structure Of Cpn60.2 From Mycobacterium
Tuberculosis At 2.8a
Length = 546
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
Query: 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQ 93
L+ + +LGP G N ++ +TND +I E+E++ P A+L+ K
Sbjct: 22 LADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTD 81
Query: 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 137
+ GDG A +++ + G +P + G KA+ K
Sbjct: 82 DVAGDGTTTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEK 125
>pdb|2PF0|A Chain A, F258i Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans At 1.9 A
Length = 400
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 176 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 235
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAV 299
EG V + ++SG +
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVISGGEL 263
>pdb|3N9K|A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans In Complex With Laminaritriose At 1.7 A
Length = 399
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 175 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAAQVFGYW 234
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 235 NNFLTVAEGQWNVVVDHHHYQVFSG---GELS 263
>pdb|1CZ1|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A
Resolution
pdb|1EQC|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans In Complex
With Castanospermine At 1.85 A
Length = 394
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 170 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 229
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 230 NNFLTVAEGQWNVVVDHHHYQVFSG---GELS 258
>pdb|1EQP|A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans
Length = 394
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 170 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 229
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 230 NNFLTVAEGQWNVVVDHHHYQVFSG---GELS 258
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes
pdb|1PCQ|B Chain B, Crystal Structure Of Groel-Groes
pdb|1PCQ|C Chain C, Crystal Structure Of Groel-Groes
pdb|1PCQ|D Chain D, Crystal Structure Of Groel-Groes
pdb|1PCQ|E Chain E, Crystal Structure Of Groel-Groes
pdb|1PCQ|F Chain F, Crystal Structure Of Groel-Groes
pdb|1PCQ|G Chain G, Crystal Structure Of Groel-Groes
pdb|1PCQ|H Chain H, Crystal Structure Of Groel-Groes
pdb|1PCQ|I Chain I, Crystal Structure Of Groel-Groes
pdb|1PCQ|J Chain J, Crystal Structure Of Groel-Groes
pdb|1PCQ|K Chain K, Crystal Structure Of Groel-Groes
pdb|1PCQ|L Chain L, Crystal Structure Of Groel-Groes
pdb|1PCQ|M Chain M, Crystal Structure Of Groel-Groes
pdb|1PCQ|N Chain N, Crystal Structure Of Groel-Groes
pdb|1PF9|A Chain A, Groel-Groes-Adp
pdb|1PF9|B Chain B, Groel-Groes-Adp
pdb|1PF9|C Chain C, Groel-Groes-Adp
pdb|1PF9|D Chain D, Groel-Groes-Adp
pdb|1PF9|E Chain E, Groel-Groes-Adp
pdb|1PF9|F Chain F, Groel-Groes-Adp
pdb|1PF9|G Chain G, Groel-Groes-Adp
pdb|1PF9|H Chain H, Groel-Groes-Adp
pdb|1PF9|I Chain I, Groel-Groes-Adp
pdb|1PF9|J Chain J, Groel-Groes-Adp
pdb|1PF9|K Chain K, Groel-Groes-Adp
pdb|1PF9|L Chain L, Groel-Groes-Adp
pdb|1PF9|M Chain M, Groel-Groes-Adp
pdb|1PF9|N Chain N, Groel-Groes-Adp
pdb|1SVT|A Chain A, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|B Chain B, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|C Chain C, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|D Chain D, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|E Chain E, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|F Chain F, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|G Chain G, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|H Chain H, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|I Chain I, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|J Chain J, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|K Chain K, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|L Chain L, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|M Chain M, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SVT|N Chain N, Crystal Structure Of Groel14-Groes7-(Adp-Alfx)7
pdb|1SX4|A Chain A, Groel-Groes-Adp7
pdb|1SX4|B Chain B, Groel-Groes-Adp7
pdb|1SX4|C Chain C, Groel-Groes-Adp7
pdb|1SX4|D Chain D, Groel-Groes-Adp7
pdb|1SX4|E Chain E, Groel-Groes-Adp7
pdb|1SX4|F Chain F, Groel-Groes-Adp7
pdb|1SX4|G Chain G, Groel-Groes-Adp7
pdb|1SX4|H Chain H, Groel-Groes-Adp7
pdb|1SX4|I Chain I, Groel-Groes-Adp7
pdb|1SX4|J Chain J, Groel-Groes-Adp7
pdb|1SX4|K Chain K, Groel-Groes-Adp7
pdb|1SX4|L Chain L, Groel-Groes-Adp7
pdb|1SX4|M Chain M, Groel-Groes-Adp7
pdb|1SX4|N Chain N, Groel-Groes-Adp7
pdb|2YNJ|A Chain A, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|B Chain B, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|C Chain C, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|D Chain D, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|E Chain E, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|F Chain F, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|G Chain G, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|H Chain H, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|I Chain I, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|J Chain J, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|K Chain K, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|L Chain L, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|M Chain M, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
pdb|2YNJ|N Chain N, Groel At Sub-Nanometer Resolution By Constrained Single
Particle Tomography
Length = 524
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAQ|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAR|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAS|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AAU|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB2|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|B Chain B, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|C Chain C, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|D Chain D, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|E Chain E, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|F Chain F, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|G Chain G, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|H Chain H, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|I Chain I, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|J Chain J, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|K Chain K, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|L Chain L, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|M Chain M, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
pdb|4AB3|N Chain N, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel
Length = 548
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 10 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 69
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 70 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
>pdb|2PC8|A Chain A, E292q Mutant Of Exo-B-(1,3)-Glucanase From Candida
Albicans In Complex With Two Separately Bound
Glucopyranoside Units At 1.8 A
Length = 400
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 176 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 235
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSG---GELS 264
>pdb|2PBO|A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans
At 1.85 A
Length = 400
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 176 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 235
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSG---GELS 264
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|B Chain B, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|C Chain C, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|D Chain D, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|E Chain E, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|F Chain F, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|G Chain G, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|H Chain H, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|I Chain I, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|J Chain J, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|K Chain K, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|L Chain L, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|M Chain M, Crystal Structure Of The Chaperonin Groel-E461k
pdb|2EU1|N Chain N, Crystal Structure Of The Chaperonin Groel-E461k
Length = 548
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 10 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 69
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 70 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 128
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|B Chain B, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|C Chain C, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|D Chain D, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|E Chain E, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|F Chain F, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|G Chain G, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|H Chain H, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|I Chain I, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|J Chain J, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|K Chain K, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|L Chain L, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|M Chain M, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
pdb|2YEY|N Chain N, Crystal Structure Of The Allosteric-Defective Chaperonin
Groel E434k Mutant
Length = 524
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|B Chain B, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|C Chain C, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|D Chain D, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|E Chain E, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|F Chain F, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|G Chain G, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|H Chain H, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|I Chain I, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|J Chain J, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|K Chain K, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|L Chain L, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|M Chain M, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
pdb|3C9V|N Chain N, C7 Symmetrized Structure Of Unliganded Groel At 4.7
Angstrom Resolution From Cryoem
Length = 526
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|B Chain B, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|C Chain C, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|D Chain D, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|E Chain E, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|F Chain F, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|G Chain G, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|H Chain H, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|I Chain I, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|J Chain J, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|K Chain K, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|L Chain L, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|M Chain M, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1J4Z|N Chain N, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|O Chain O, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|P Chain P, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Q Chain Q, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|R Chain R, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|S Chain S, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|T Chain T, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|U Chain U, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|V Chain V, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|W Chain W, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|X Chain X, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Y Chain Y, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|Z Chain Z, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|1 Chain 1, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
pdb|1KPO|2 Chain 2, Structural And Mechanistic Basis For Allostery In The
Bacterial Chaperonin Groel; See Remark 400
Length = 547
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
>pdb|2PB1|A Chain A, Exo-b-(1,3)-glucanase From Candida Albicans In Complex
With Unhydrolysed And Covalently Linked
2,4-dinitrophenyl-2-deoxy-2- Fluoro-b-d-glucopyranoside
At 1.9 A
Length = 400
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 38/88 (43%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 176 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 235
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAV 299
EG V + + SG +
Sbjct: 236 NNFLTVAEGQWNVVVDHHHYQVFSGGEL 263
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|B Chain B, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|C Chain C, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|D Chain D, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|E Chain E, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|F Chain F, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|G Chain G, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|H Chain H, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|I Chain I, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|J Chain J, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|K Chain K, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|L Chain L, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|M Chain M, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1AON|N Chain N, Crystal Structure Of The Asymmetric Chaperonin Complex
GroelGROES(ADP)7
pdb|1GRU|A Chain A, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|B Chain B, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|C Chain C, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|D Chain D, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|E Chain E, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|F Chain F, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|G Chain G, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|H Chain H, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|I Chain I, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|J Chain J, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|K Chain K, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|L Chain L, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|M Chain M, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1GRU|N Chain N, Solution Structure Of Groes-Adp7-Groel-Atp7 Complex By
Cryo-Em
pdb|1MNF|A Chain A, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|B Chain B, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|C Chain C, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|D Chain D, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|E Chain E, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|F Chain F, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|G Chain G, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|H Chain H, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|I Chain I, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|J Chain J, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|K Chain K, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|L Chain L, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|M Chain M, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1MNF|N Chain N, Domain Motions In Groel Upon Binding Of An Oligopeptide
pdb|1XCK|A Chain A, Crystal Structure Of Apo Groel
pdb|1XCK|B Chain B, Crystal Structure Of Apo Groel
pdb|1XCK|C Chain C, Crystal Structure Of Apo Groel
pdb|1XCK|D Chain D, Crystal Structure Of Apo Groel
pdb|1XCK|E Chain E, Crystal Structure Of Apo Groel
pdb|1XCK|F Chain F, Crystal Structure Of Apo Groel
pdb|1XCK|G Chain G, Crystal Structure Of Apo Groel
pdb|1XCK|H Chain H, Crystal Structure Of Apo Groel
pdb|1XCK|I Chain I, Crystal Structure Of Apo Groel
pdb|1XCK|J Chain J, Crystal Structure Of Apo Groel
pdb|1XCK|K Chain K, Crystal Structure Of Apo Groel
pdb|1XCK|L Chain L, Crystal Structure Of Apo Groel
pdb|1XCK|M Chain M, Crystal Structure Of Apo Groel
pdb|1XCK|N Chain N, Crystal Structure Of Apo Groel
pdb|2C7C|A Chain A, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|B Chain B, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|C Chain C, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|D Chain D, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|E Chain E, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|F Chain F, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|G Chain G, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|H Chain H, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|I Chain I, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|J Chain J, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|K Chain K, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|L Chain L, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|M Chain M, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7C|N Chain N, Fitted Coordinates For Groel-Atp7-Groes Cryo-Em Complex
(Emd-1180)
pdb|2C7D|A Chain A, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|B Chain B, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|C Chain C, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|D Chain D, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|E Chain E, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|F Chain F, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|G Chain G, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|H Chain H, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|I Chain I, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|J Chain J, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|K Chain K, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|L Chain L, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|M Chain M, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2C7D|N Chain N, Fitted Coordinates For Groel-Adp7-Groes Cryo-Em Complex
(Emd-1181)
pdb|2CGT|A Chain A, Groel-Adp-Gp31 Complex
pdb|2CGT|B Chain B, Groel-Adp-Gp31 Complex
pdb|2CGT|C Chain C, Groel-Adp-Gp31 Complex
pdb|2CGT|D Chain D, Groel-Adp-Gp31 Complex
pdb|2CGT|E Chain E, Groel-Adp-Gp31 Complex
pdb|2CGT|F Chain F, Groel-Adp-Gp31 Complex
pdb|2CGT|G Chain G, Groel-Adp-Gp31 Complex
pdb|2CGT|H Chain H, Groel-Adp-Gp31 Complex
pdb|2CGT|I Chain I, Groel-Adp-Gp31 Complex
pdb|2CGT|J Chain J, Groel-Adp-Gp31 Complex
pdb|2CGT|K Chain K, Groel-Adp-Gp31 Complex
pdb|2CGT|L Chain L, Groel-Adp-Gp31 Complex
pdb|2CGT|M Chain M, Groel-Adp-Gp31 Complex
pdb|2CGT|N Chain N, Groel-Adp-Gp31 Complex
pdb|2NWC|A Chain A, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|B Chain B, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|C Chain C, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|D Chain D, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|E Chain E, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|F Chain F, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|G Chain G, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|H Chain H, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|I Chain I, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|J Chain J, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|K Chain K, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|L Chain L, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|M Chain M, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|2NWC|N Chain N, A 3.02 Angstrom Crystal Structure Of Wild-Type Apo Groel
In A Monoclinic Space Group
pdb|3E76|A Chain A, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|B Chain B, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|C Chain C, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|D Chain D, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|E Chain E, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|F Chain F, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|G Chain G, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|H Chain H, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|I Chain I, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|J Chain J, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|K Chain K, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|L Chain L, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|M Chain M, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
pdb|3E76|N Chain N, Crystal Structure Of Wild-Type Groel With Bound Thallium
Ions
Length = 547
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
A+++ + GDG A I+ + + G++P ++ G KA+ +
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAV 127
>pdb|3O6A|A Chain A, F144yF258Y DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From
Candida Albicans At 2 A
Length = 399
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 212 GGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYA 271
GG S +V G+ L ++ +G + NM+K K G T + V+IH+A Q+ Y
Sbjct: 175 GGNEYSDVVIGIELLNEPLGPVLNMDKLKQFFLDGYNSLRQTGSVTPVIIHDAFQVFGYW 234
Query: 272 KTEEAKVEGLIKAVAESGAEVIVSGAAVGEMA 303
EG V + + SG GE++
Sbjct: 235 NNFLTVAEGQWNVVVDHHHYQVYSG---GELS 263
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|B Chain B, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|C Chain C, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|D Chain D, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|E Chain E, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|F Chain F, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
pdb|1IOK|G Chain G, Crystal Structure Of Chaperonin-60 From Paracoccus
Denitrificans
Length = 545
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV----QHPAAKLLVLAGKAQQ 93
L+ + +LGP G N ++ +T D ++ E+E+ ++ A+++
Sbjct: 23 LADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTN 82
Query: 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTI 139
+E GDG A I++ + + G++P ++ G A K +
Sbjct: 83 DEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVV 128
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|B Chain B, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|C Chain C, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|D Chain D, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|E Chain E, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|F Chain F, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|G Chain G, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|H Chain H, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|I Chain I, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|J Chain J, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|K Chain K, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|L Chain L, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|M Chain M, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
pdb|1KP8|N Chain N, Structural Basis For Groel-Assisted Protein Folding From
The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A
Resolution
Length = 547
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|B Chain B, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|C Chain C, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|D Chain D, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|E Chain E, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|F Chain F, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
pdb|1GRL|G Chain G, The Crystal Structure Of The Bacterial Chaperonin Groel At
2.8 Angstroms
Length = 548
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 10 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 69
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 70 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 124
>pdb|1SS8|A Chain A, Groel
pdb|1SS8|B Chain B, Groel
pdb|1SS8|C Chain C, Groel
pdb|1SS8|D Chain D, Groel
pdb|1SS8|E Chain E, Groel
pdb|1SS8|F Chain F, Groel
pdb|1SS8|G Chain G, Groel
Length = 524
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 136
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|B Chain B, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|C Chain C, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|D Chain D, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|E Chain E, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|F Chain F, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|G Chain G, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|H Chain H, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|I Chain I, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|J Chain J, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|K Chain K, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|L Chain L, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|M Chain M, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
pdb|3CAU|N Chain N, D7 Symmetrized Structure Of Unliganded Groel At 4.2
Angstrom Resolution By Cryoem
Length = 526
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|B Chain B, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|C Chain C, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|D Chain D, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|E Chain E, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|F Chain F, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|G Chain G, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|H Chain H, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|I Chain I, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|J Chain J, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|K Chain K, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|L Chain L, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|M Chain M, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|1GR5|N Chain N, Solution Structure Of Apo Groel By Cryo-Electron
Microscopy
pdb|2C7E|A Chain A, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|B Chain B, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|C Chain C, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|D Chain D, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|E Chain E, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|F Chain F, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|G Chain G, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|H Chain H, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|I Chain I, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|J Chain J, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|K Chain K, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|L Chain L, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|M Chain M, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
pdb|2C7E|N Chain N, Revised Atomic Structure Fitting Into A Groel(D398a)-Atp7
Cryo-Em Map (Emd 1047)
Length = 547
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14
pdb|1SX3|B Chain B, Groel14-(Atpgammas)14
pdb|1SX3|C Chain C, Groel14-(Atpgammas)14
pdb|1SX3|D Chain D, Groel14-(Atpgammas)14
pdb|1SX3|E Chain E, Groel14-(Atpgammas)14
pdb|1SX3|F Chain F, Groel14-(Atpgammas)14
pdb|1SX3|G Chain G, Groel14-(Atpgammas)14
pdb|1SX3|H Chain H, Groel14-(Atpgammas)14
pdb|1SX3|I Chain I, Groel14-(Atpgammas)14
pdb|1SX3|J Chain J, Groel14-(Atpgammas)14
pdb|1SX3|K Chain K, Groel14-(Atpgammas)14
pdb|1SX3|L Chain L, Groel14-(Atpgammas)14
pdb|1SX3|M Chain M, Groel14-(Atpgammas)14
pdb|1SX3|N Chain N, Groel14-(Atpgammas)14
Length = 525
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 136
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVT 124
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|B Chain B, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|C Chain C, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|D Chain D, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|E Chain E, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|F Chain F, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
pdb|1OEL|G Chain G, Conformational Variability In The Refined Structure Of The
Chaperonin Groel At 2.8 Angstrom Resolution
Length = 547
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP---- 80
++A +K + L+ + +LGP G N ++ +T D ++ E+E++
Sbjct: 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENM 68
Query: 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 135
A+++ + GDG A I+ + + G++P ++ G KA+
Sbjct: 69 GAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAV 123
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|B Chain B, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|C Chain C, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|D Chain D, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|E Chain E, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|F Chain F, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|G Chain G, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|H Chain H, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|I Chain I, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|J Chain J, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|K Chain K, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|L Chain L, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|M Chain M, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WE3|N Chain N, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|AA Chain a, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|BB Chain b, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|CC Chain c, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|DD Chain d, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|EE Chain e, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|FF Chain f, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|GG Chain g, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|HH Chain h, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|II Chain i, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|JJ Chain j, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|KK Chain k, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|LL Chain l, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|MM Chain m, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
pdb|1WF4|NN Chain n, Crystal Structure Of The Chaperonin Complex
Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS
Length = 543
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 374 VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKET 433
V+ + + +T++ L + + +D +N +A + IVPG T + ++E K
Sbjct: 374 VAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLE 432
Query: 434 GLDQYAIAKFAE-SFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADI 492
G D+ AK + E + +AENAG I+ + AE + + G + G D+
Sbjct: 433 G-DEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAE--TKNPRYGFNAATGEFVDM 489
Query: 493 STMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527
+ D AL+ AA +L + V+ +
Sbjct: 490 VEAGIVDPAKVTRSALQNAASIGALILTTEAVVAE 524
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 24 LDEAVLKNID-ACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELE----VQ 78
DEA + ++ ++ + +LGP G N ++ +T D T+ E+E ++
Sbjct: 7 FDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLE 66
Query: 79 HPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKT 138
+ A+LL + GDG A I++ + + G +P + G KA+
Sbjct: 67 NIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAA 126
Query: 139 I 139
+
Sbjct: 127 V 127
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 9/118 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAA 298
V V + ATE + L+ E ++ K + L+ A + G ++ G A
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVGYA 123
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV+ A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVAYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 1 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCF------GQVVMAEAVGIDKDKPKEA 54
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 55 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 112
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 113 GNLREYLRAR 122
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 3 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCF------GQVVMAEAVGIDKDKPKEA 56
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 57 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 114
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 115 GNLREYLRAR 124
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 6 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCF------GQVVMAEAVGIDKDKPKEA 59
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 60 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 117
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 118 GNLREYLRAR 127
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 60 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCF------GQVVMAEAVGIDKDKPKEA 113
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 114 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 171
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 172 GNLREYLRAR 181
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEEDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIINLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIITLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 182 PLIADACIQVCPKNPA-NFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240
P++A P++P F D + + K LG G G V+ ++AVG K+ K
Sbjct: 14 PMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGAF------GQVVMAEAVGIDKDKPKEA 67
Query: 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGA-EVIVSGAAV 299
V V + ATE + L+ E ++ K + L+ A + G VIV A+
Sbjct: 68 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGK--HKNIIHLLGACTQDGPLYVIVEYASK 125
Query: 300 GEMALHFCER 309
G + + R
Sbjct: 126 GNLREYLRAR 135
>pdb|2X3L|A Chain A, Crystal Structure Of The Orn_lys_arg Decarboxylase Family
Protein Sar0482 From Methicillin-Resistant
Staphylococcus Aureus
pdb|2X3L|B Chain B, Crystal Structure Of The Orn_lys_arg Decarboxylase Family
Protein Sar0482 From Methicillin-Resistant
Staphylococcus Aureus
Length = 446
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 23 GLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAA 82
G+ + +L +++ Q I SL G M I HL +L +T D I ++ HP
Sbjct: 1 GMKQPILNKLESLNQEEAI---SLHVPGHKNMTIGHLSQLSMTMDKTEIPGLDDLHHPEE 57
Query: 83 KLLVLAGKAQQEEIGDGANL 102
+L + ++ DG L
Sbjct: 58 VILKSMKQVEKHSDYDGYFL 77
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2
pdb|1SJP|B Chain B, Mycobacterium Tuberculosis Chaperonin60.2
Length = 504
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 64 VTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIR 119
+TND +I E+E++ P A+L+ K + GDG A +++ +
Sbjct: 6 ITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGTTTATVLAQALVREGLRNVA 65
Query: 120 MGLHPSEIISGYTKAINK 137
G +P + G KA+ K
Sbjct: 66 AGANPLGLKRGIEKAVEK 83
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
CP +P ++ N KL G + RG + DA+ ++ +E ++A +AG V
Sbjct: 255 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI--VRALESGRLAGYAGDV 309
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 192 CPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGV 248
CP +P ++ N KL G + RG + DA+ ++ +E ++A +AG V
Sbjct: 256 CPLHPETEHMINDETLKLFKRGAYLVNTARGKLCDRDAI--VRALESGRLAGYAGDV 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,925,478
Number of Sequences: 62578
Number of extensions: 575668
Number of successful extensions: 1739
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 99
length of query: 568
length of database: 14,973,337
effective HSP length: 104
effective length of query: 464
effective length of database: 8,465,225
effective search space: 3927864400
effective search space used: 3927864400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)