Query 008377
Match_columns 568
No_of_seqs 145 out of 1426
Neff 7.9
Searched_HMMs 46136
Date Thu Mar 28 23:03:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0361 Chaperonin complex com 100.0 1E-110 2E-115 823.9 38.7 510 10-529 5-524 (543)
2 TIGR02346 chap_CCT_theta T-com 100.0 2E-104 4E-109 869.2 61.3 518 10-529 2-521 (531)
3 TIGR02339 thermosome_arch ther 100.0 1E-104 3E-109 871.8 59.4 508 13-526 4-518 (519)
4 TIGR02347 chap_CCT_zeta T-comp 100.0 4E-104 9E-109 865.0 60.8 511 13-529 4-527 (531)
5 TIGR02344 chap_CCT_gamma T-com 100.0 4E-104 9E-109 868.7 58.8 511 13-529 4-523 (525)
6 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1E-103 3E-108 862.0 60.9 509 14-529 2-515 (517)
7 TIGR02343 chap_CCT_epsi T-comp 100.0 2E-103 3E-108 862.4 59.0 511 13-527 13-531 (532)
8 cd03340 TCP1_eta TCP-1 (CTT or 100.0 3E-103 6E-108 861.7 59.9 510 13-528 4-520 (522)
9 cd03343 cpn60 cpn60 chaperonin 100.0 3E-103 5E-108 862.0 59.6 509 13-527 3-516 (517)
10 TIGR02342 chap_CCT_delta T-com 100.0 3E-103 6E-108 859.1 59.2 499 25-527 8-516 (517)
11 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3E-103 6E-108 861.9 59.0 503 21-529 4-527 (527)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 4E-103 9E-108 860.1 58.3 510 13-526 9-526 (526)
13 PTZ00212 T-complex protein 1 s 100.0 9E-103 2E-107 857.4 60.4 512 11-529 8-527 (533)
14 TIGR02341 chap_CCT_beta T-comp 100.0 8E-102 2E-106 846.5 60.5 509 14-529 3-516 (519)
15 TIGR02345 chap_CCT_eta T-compl 100.0 6E-102 1E-106 849.6 58.6 509 13-528 6-520 (522)
16 cd03338 TCP1_delta TCP-1 (CTT 100.0 7E-102 2E-106 849.5 59.0 499 25-527 7-515 (515)
17 TIGR02340 chap_CCT_alpha T-com 100.0 3E-101 6E-106 847.1 60.5 507 20-532 7-534 (536)
18 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.4E-99 3E-104 823.1 56.1 477 16-528 3-483 (484)
19 KOG0358 Chaperonin complex com 100.0 4E-101 9E-106 755.3 36.4 500 24-527 24-533 (534)
20 cd03341 TCP1_theta TCP-1 (CTT 100.0 2.9E-98 6E-103 811.0 54.5 466 22-527 4-471 (472)
21 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1.9E-97 4E-102 806.2 51.6 467 13-526 4-479 (480)
22 KOG0362 Chaperonin complex com 100.0 1.5E-96 3E-101 746.8 48.9 521 1-529 1-522 (537)
23 KOG0363 Chaperonin complex com 100.0 6.1E-97 1E-101 722.5 38.0 517 11-534 4-525 (527)
24 cd00309 chaperonin_type_I_II c 100.0 9.9E-94 2.1E-98 777.1 55.6 456 24-526 6-464 (464)
25 COG0459 GroL Chaperonin GroEL 100.0 1.9E-92 4.2E-97 762.6 50.1 498 21-530 7-516 (524)
26 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 6.2E-92 1.3E-96 769.3 52.4 480 38-529 1-485 (485)
27 PRK12849 groEL chaperonin GroE 100.0 1.6E-89 3.4E-94 749.4 53.4 453 25-530 9-525 (542)
28 PRK00013 groEL chaperonin GroE 100.0 2.1E-89 4.6E-94 748.4 54.2 469 25-551 9-541 (542)
29 PRK12850 groEL chaperonin GroE 100.0 3.6E-88 7.9E-93 739.8 53.6 470 25-552 10-542 (544)
30 PRK12851 groEL chaperonin GroE 100.0 3.6E-87 7.9E-92 731.5 54.3 466 25-549 10-539 (541)
31 PRK12852 groEL chaperonin GroE 100.0 4.3E-87 9.3E-92 733.1 53.5 469 25-551 10-542 (545)
32 PTZ00114 Heat shock protein 60 100.0 9.1E-87 2E-91 731.2 54.6 460 25-535 21-547 (555)
33 cd03344 GroEL GroEL_like type 100.0 1.7E-86 3.7E-91 723.8 51.0 449 25-526 7-519 (520)
34 KOG0360 Chaperonin complex com 100.0 8.3E-89 1.8E-93 685.7 29.8 504 22-531 16-539 (545)
35 TIGR02348 GroEL chaperonin Gro 100.0 1.1E-85 2.4E-90 718.7 51.7 452 25-529 8-523 (524)
36 PRK14104 chaperonin GroEL; Pro 100.0 1E-84 2.2E-89 712.2 53.1 470 25-551 10-543 (546)
37 CHL00093 groEL chaperonin GroE 100.0 1.9E-84 4.1E-89 709.9 48.8 455 25-529 9-526 (529)
38 KOG0364 Chaperonin complex com 100.0 3.8E-86 8.2E-91 660.5 28.2 510 14-529 8-522 (527)
39 PLN03167 Chaperonin-60 beta su 100.0 7.3E-84 1.6E-88 709.0 47.8 455 26-529 66-582 (600)
40 KOG0359 Chaperonin complex com 100.0 3.2E-80 7E-85 617.2 26.3 495 25-530 16-517 (520)
41 KOG0357 Chaperonin complex com 100.0 4.6E-68 9.9E-73 515.7 22.1 371 21-529 24-397 (400)
42 KOG0356 Mitochondrial chaperon 100.0 2.9E-48 6.3E-53 400.8 33.5 451 25-529 23-538 (550)
43 cd03334 Fab1_TCP TCP-1 like do 100.0 3.5E-39 7.6E-44 322.6 26.1 228 176-411 19-257 (261)
44 cd03333 chaperonin_like chaper 100.0 1.6E-34 3.5E-39 281.1 23.7 206 159-407 2-209 (209)
45 KOG0230 Phosphatidylinositol-4 99.8 9.1E-19 2E-23 198.9 16.0 232 177-416 334-575 (1598)
46 PRK13600 putative ribosomal pr 70.6 16 0.00034 30.0 6.2 51 279-329 19-73 (84)
47 COG1433 Uncharacterized conser 63.3 29 0.00062 30.6 6.7 51 281-332 57-107 (121)
48 cd00851 MTH1175 This uncharact 62.2 19 0.00041 30.1 5.4 43 281-325 55-97 (103)
49 PF02579 Nitro_FeMo-Co: Dinitr 58.7 27 0.00059 28.5 5.7 36 282-318 46-81 (94)
50 cd00562 NifX_NifB This CD repr 51.8 40 0.00086 27.9 5.7 38 281-319 53-90 (102)
51 PRK13602 putative ribosomal pr 49.0 61 0.0013 26.3 6.1 50 281-333 19-72 (82)
52 PRK06683 hypothetical protein; 48.2 63 0.0014 26.3 6.0 51 281-334 19-73 (82)
53 PRK07283 hypothetical protein; 46.7 70 0.0015 26.9 6.3 49 281-332 26-78 (98)
54 PRK13601 putative L7Ae-like ri 46.6 69 0.0015 26.1 6.0 50 281-333 16-69 (82)
55 PRK07714 hypothetical protein; 44.6 81 0.0018 26.6 6.4 50 281-333 26-79 (100)
56 PRK01018 50S ribosomal protein 40.6 96 0.0021 26.1 6.2 49 281-332 24-77 (99)
57 PF01248 Ribosomal_L7Ae: Ribos 38.7 74 0.0016 26.2 5.3 49 279-327 21-74 (95)
58 PRK04175 rpl7ae 50S ribosomal 37.5 1E+02 0.0022 27.1 6.2 51 279-332 36-91 (122)
59 COG4359 Uncharacterized conser 35.3 1.2E+02 0.0025 28.9 6.3 58 264-321 61-125 (220)
60 TIGR03677 rpl7ae 50S ribosomal 35.1 1.1E+02 0.0025 26.6 6.0 49 279-327 32-85 (117)
61 COG1358 RPL8A Ribosomal protei 33.5 1.3E+02 0.0029 26.2 6.1 51 278-328 32-87 (116)
62 PTZ00106 60S ribosomal protein 31.3 1.5E+02 0.0033 25.5 6.0 51 280-333 32-87 (108)
63 cd00852 NifB NifB belongs to a 30.2 1.3E+02 0.0029 25.3 5.6 31 288-319 64-94 (106)
64 cd01143 YvrC Periplasmic bindi 30.0 1.4E+02 0.0031 27.6 6.4 52 282-333 53-111 (195)
65 PF12846 AAA_10: AAA-like doma 29.6 1.4E+02 0.003 29.7 6.6 57 277-333 241-302 (304)
66 PRK05583 ribosomal protein L7A 28.5 2E+02 0.0042 24.6 6.2 50 281-333 25-78 (104)
67 PF07905 PucR: Purine cataboli 26.6 2.2E+02 0.0048 24.7 6.5 50 277-326 60-114 (123)
68 cd01144 BtuF Cobalamin binding 26.1 1.8E+02 0.0039 28.2 6.5 52 282-333 50-108 (245)
69 TIGR03659 IsdE heme ABC transp 25.9 1.5E+02 0.0033 29.8 6.1 52 282-333 84-141 (289)
70 PRK09534 btuF corrinoid ABC tr 25.8 1.6E+02 0.0035 31.0 6.4 52 282-333 112-170 (359)
71 PF08708 PriCT_1: Primase C te 25.2 3.2E+02 0.007 21.0 7.3 54 108-170 14-67 (71)
72 cd00853 NifX NifX belongs to a 24.7 2.2E+02 0.0047 23.7 5.9 31 288-319 60-90 (102)
73 TIGR02663 nifX nitrogen fixati 24.6 2.4E+02 0.0051 24.4 6.3 45 288-333 62-110 (119)
74 COG1656 Uncharacterized conser 22.2 39 0.00084 31.3 0.7 29 532-561 126-154 (165)
75 TIGR00129 fdhD_narQ formate de 22.1 1.3E+02 0.0029 29.7 4.6 41 281-321 184-224 (237)
76 COG1504 Uncharacterized conser 22.0 4.1E+02 0.0088 23.1 6.7 51 283-333 55-111 (121)
77 TIGR03151 enACPred_II putative 21.4 3.4E+02 0.0075 27.9 7.7 55 280-334 78-132 (307)
78 PF12554 MOZART1: Mitotic-spin 21.1 1.5E+02 0.0033 21.6 3.4 21 109-129 22-42 (48)
79 cd01141 TroA_d Periplasmic bin 20.6 2E+02 0.0044 26.5 5.4 50 282-331 62-119 (186)
80 PRK00724 formate dehydrogenase 20.4 1.7E+02 0.0036 29.5 5.0 41 281-321 213-253 (263)
81 cd04743 NPD_PKS 2-Nitropropane 20.2 3.4E+02 0.0073 28.2 7.2 54 281-335 74-127 (320)
No 1
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-110 Score=823.87 Aligned_cols=510 Identities=27% Similarity=0.458 Sum_probs=489.0
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHH
Q 008377 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (568)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~ 89 (568)
...++|+++..++|- .++.+|+.||..+++.++|||||+|+||+|+++.|+++|||||+||||.|++-||+|+.|++.+
T Consensus 5 ~ii~lkegtd~sqGk-~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlVdia 83 (543)
T KOG0361|consen 5 PIILLKEGTDPSQGK-GQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLVDIA 83 (543)
T ss_pred CEEEeecccCcccCc-hhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHHHHH
Confidence 455689999998885 6789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCC----CHHHHHHHH
Q 008377 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVR----NTEEVIYRM 165 (568)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~----~~~~l~~i~ 165 (568)
++||.++||||||||+|++++|+++..+++.|+||+.|+.+|+.|...+++.++++++.. +.. -++.|++++
T Consensus 84 ~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i----~~~~~~~~r~lL~KcA 159 (543)
T KOG0361|consen 84 RSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEI----DGSSKTELRELLEKCA 159 (543)
T ss_pred hhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEe----cccchhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998762 222 267789999
Q ss_pred HHhhhccc-cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC-----CCCcccccCc
Q 008377 166 KAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKA 239 (568)
Q Consensus 166 ~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~-----~~~~~~i~n~ 239 (568)
.|+++||+ .++.++|+++++||+..+.. ..+++.|.|.|++||+++||.+++|+.|++.| +.+|+++.||
T Consensus 160 ~T~lsSKlI~~ek~fF~~MvVDAV~~ld~----~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~Np 235 (543)
T KOG0361|consen 160 ATALSSKLIRQEKEFFAKMVVDAVLTLDN----DLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNP 235 (543)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHhhcc----ccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCc
Confidence 99999996 56789999999999998852 36778999999999999999999999999865 5689999999
Q ss_pred eEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 240 KVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 240 kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
||+++|.+||.+.++.+++++++++++++.+++.||+.+.++++++...|+|||++.-.|.|.|.|||++++|+|..|++
T Consensus 236 kIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~ 315 (543)
T KOG0361|consen 236 KILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVP 315 (543)
T ss_pred eEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHH
Q 008377 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~ 399 (568)
.+||.|+..++|++++++..++.++.+|.|..++++++|++||.+|++|+. .+.||++|||+.+++++|.+|++|||++
T Consensus 316 ~eDl~Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~-aktcTliLRGgaeqfieE~eRSlHDAIm 394 (543)
T KOG0361|consen 316 EEDLNRVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPK-AKTCTLILRGGAEQFIEETERSLHDAIM 394 (543)
T ss_pred HHHHHHHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCc-cceeEEEEeccHHHHHHHHhhhhhhHHH
Confidence 999999999999999999999999999999999999999999999999984 8999999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008377 400 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479 (568)
Q Consensus 400 ~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~ 479 (568)
++|.++++..||+|||++||++|++||+|+.++.+++|+.+.+|++|||.|||+||+|+|+|..+++++||.+|.+|..|
T Consensus 395 IVrralkn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w 474 (543)
T KOG0361|consen 395 IVRRALKNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKW 474 (543)
T ss_pred HHHHHhccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 480 ~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+|+|++++.+.|+++.+||||..||++++..|+|+|++||.+|+.|...+
T Consensus 475 ~Gvdi~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~ 524 (543)
T KOG0361|consen 475 YGVDINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPK 524 (543)
T ss_pred eeeeecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCc
Confidence 99999999999999999999999999999999999999999999998754
No 2
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2e-104 Score=869.23 Aligned_cols=518 Identities=62% Similarity=0.969 Sum_probs=490.5
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHH
Q 008377 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (568)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~ 89 (568)
...+++++.+.+++.++++..|+.||..++++++|||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~e~a 81 (531)
T TIGR02346 2 INSLLKEGYRHMSGLEEAVIKNIEACKELSNITRTSLGPNGMNKMVINHLDKLFVTNDAATILRELEVQHPAAKLLVMAS 81 (531)
T ss_pred ccccccCCcccccchHHHHHHHHHHHHHHHHHHhcccCCCcCCeEEEcCCCCEEEECcHHHHHHhccccCHHHHHHHHHH
Confidence 34566777666677656999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhh
Q 008377 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (568)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l 169 (568)
++|++++||||||+|||+++||+++.+++++|+||..|++||+.|.+.+++.|++++...+. +..+.+.|.++++|++
T Consensus 82 ~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~tsl 159 (531)
T TIGR02346 82 EMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVE--DVRNKKELIKALKASI 159 (531)
T ss_pred HHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998863232 4457889999999999
Q ss_pred hccccCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCceEEEEeeccc
Q 008377 170 ASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 170 ~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~kIlll~~~Le 249 (568)
+||+.+++++|++++++|+.++++++...+++++|+|+++.||+++||++++|++|++++.++|+.++||||++++++++
T Consensus 160 ~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~ds~li~Gi~~~~~~~~~~k~i~n~kI~l~~~~l~ 239 (531)
T TIGR02346 160 SSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSISNSEVLKGMVFNREAEGSVKRVKNAKVAVFSCPLD 239 (531)
T ss_pred ccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChhhceeEeeeEEeccCCCCceeccCCCEEEEecCcC
Confidence 99986669999999999999998755335889999999999999999999999999999888899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHH
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~ 329 (568)
+.+++.++++.+++++++..+.+.|+++++++++++++.|++||+++++|+|.+++||.++||+++++++..+|+|||.+
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~ 319 (531)
T TIGR02346 240 TATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKT 319 (531)
T ss_pred CCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCC
Q 008377 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (568)
Q Consensus 330 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~ 409 (568)
|||++++++++++++++|+|+.|++.++|+++|.+|++++..++.+||+|||+|+.+++|.+|+++||++++++++++|+
T Consensus 320 tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~~~ 399 (531)
T TIGR02346 320 VGATPLARLGAPQPEEIGYVDSVYVSEIGGQKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKDNR 399 (531)
T ss_pred HCCEEecccccCCHhHccccceEEEEEECCEEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999998864488999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCc-
Q 008377 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV- 488 (568)
Q Consensus 410 vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~- 488 (568)
+||||||+|+++|.+|+++++..++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|+
T Consensus 400 vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~~~ 479 (531)
T TIGR02346 400 FLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAESD 479 (531)
T ss_pred EEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCCCc
Confidence 9999999999999999999888889999999999999999999999999999999999999999877778999999999
Q ss_pred -ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 489 -CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 489 -~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+.||++.|||||+.||+++|+.|+|+|++|||||++|..+|
T Consensus 480 ~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 521 (531)
T TIGR02346 480 GVKDASEAGIYDNLATKKWAIKLATEAAVTVLRVDQIIMAKP 521 (531)
T ss_pred cccChhhcCceEcHHHHHHHHHHHHHHHHHHhhhhHhhccCC
Confidence 59999999999999999999999999999999999998765
No 3
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.2e-104 Score=871.79 Aligned_cols=508 Identities=31% Similarity=0.572 Sum_probs=484.7
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..+|. +++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~~-~~~~~ni~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (519)
T TIGR02339 4 ILKEGTQRTKGR-DAQRNNIAAAKAVAEAVKSTLGPRGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 82 (519)
T ss_pred cccCCcccccHH-HHHHHHHHHHHHHHHHHhCCCCCCCCCeeeECCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 457777777774 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ ++..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~----v~~~~~~~L~~ia~tsl~sk 158 (519)
T TIGR02339 83 DAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATK----ISPEDRDLLKKVAETSLTGK 158 (519)
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCcccHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999876 24556889999999999999
Q ss_pred cc--CcccchHHHHHHHHHHhcC---CCCCcccccceEEEEccCCCcccceeEeeEEEeecC--CCCcccccCceEEEEe
Q 008377 173 QF--GQEEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFA 245 (568)
Q Consensus 173 ~~--~~~~~ls~lv~~a~~~~~~---~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~--~~~~~~i~n~kIlll~ 245 (568)
+. .+.++|++++++|+.++++ ++...||+++|+|++++||+++||++++|++|++++ ..||+.++||||++++
T Consensus 159 ~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~ 238 (519)
T TIGR02339 159 ASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLD 238 (519)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEe
Confidence 65 4678999999999999975 233358899999999999999999999999999987 4689999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++||+++++.++++.+++++++.+++++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~r 318 (519)
T TIGR02339 239 APLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEK 318 (519)
T ss_pred ccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
||++|||++++++++++++.+|+|+.|+++++|+++|++|++|+. +..+||+|||+|+.+++|.+|+++||++++++++
T Consensus 319 Ia~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~ 397 (519)
T TIGR02339 319 LARATGAKIVSSIKEITESDLGYAGLVEERKVGDDKMTFVEGCKN-PKAVTILLRGGTEHVVDELERSIQDALHVVASAL 397 (519)
T ss_pred HHHHhCCEEeCchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999973 7899999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEecc
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~ 485 (568)
++|++|||||++|+++|++|++++.++++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.
T Consensus 398 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~ 477 (519)
T TIGR02339 398 EDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINVF 477 (519)
T ss_pred cCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEcC
Confidence 99999999999999999999999888899999999999999999999999999999999999999999876778999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhh
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLK 526 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (568)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 478 ~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 518 (519)
T TIGR02339 478 TGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRIDDVIA 518 (519)
T ss_pred CCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence 99999999999999999999999999999999999999985
No 4
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.3e-104 Score=864.98 Aligned_cols=511 Identities=26% Similarity=0.424 Sum_probs=483.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++....++ .+++..|+.||..|+++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~Kmi~~~~G~~~ITnDG~TIlk~i~i~hP~a~ll~~~a~~q 82 (531)
T TIGR02347 4 LLNPKAESLRR-DAALMMNINAARGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLNEMQIQHPTASMIARAATAQ 82 (531)
T ss_pred cccCCcccccH-HHHHHHHHHHHHHHHHHHhcCCCCCccceEEEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHHh
Confidence 45666566556 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++.. +..+.+.|.++++|+++||
T Consensus 83 d~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~---~~~~~~~l~~ia~tsl~sK 159 (531)
T TIGR02347 83 DDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTE---DEVDRELLLNVARTSLRTK 159 (531)
T ss_pred hhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCC---CCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999986521 2467889999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccc
Q 008377 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le 249 (568)
+. +++++|++++++|+..+++++. .+++++|++++..||+.+||++++|++|++++. .||+.++||||++++++|+
T Consensus 160 ~~~~~~~~ls~iv~~Av~~v~~~~~-~i~~~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le 238 (531)
T TIGR02347 160 LPIDLADQLTEIVVDAVLAIKKDGE-QIDLFMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLE 238 (531)
T ss_pred cchhhHHHHHHHHHHHHHHHhhcCC-CCChhHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCC
Confidence 75 5689999999999999987542 588889999999999999999999999998874 5899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG-------AE---VIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~-------v~---vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
+.+++..+++.+++++++..+.+.|++++++++++|++.+ ++ ||+|+++|+|.+++||.++||+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~ 318 (531)
T TIGR02347 239 YEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAK 318 (531)
T ss_pred CCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCC
Confidence 9999999999999999999999999999999999999976 25 9999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHH
Q 008377 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~ 399 (568)
+++|+|||++|||++++++++++++++|+|+.|+++.+|+++|++|++++. ++.+||+|||+|+.+++|.+|+++||++
T Consensus 319 ~~~le~ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~ 397 (531)
T TIGR02347 319 RRNMERLTLACGGEALNSVEDLTPECLGWAGLVYETSIGEEKYTFIEEVKN-PKSCTILIKGPNDHTIKQIKDAVRDGLR 397 (531)
T ss_pred HHHHHHHHHHhCCEEecccccCCccccccceEEEEEEECCeEEEEEEcCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999974 8899999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCc
Q 008377 400 TYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTK 479 (568)
Q Consensus 400 ~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~ 479 (568)
++++++++|++||||||+|+++|.+|++++...++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.+
T Consensus 398 v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~ 477 (531)
T TIGR02347 398 AVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEV 477 (531)
T ss_pred HHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999888899999999999999999999999999999999999999999877778
Q ss_pred eeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 480 ~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+|+|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 478 ~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrID~ii~~~~ 527 (531)
T TIGR02347 478 VGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLVDEVMRAGR 527 (531)
T ss_pred eeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999998766
No 5
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4e-104 Score=868.68 Aligned_cols=511 Identities=27% Similarity=0.491 Sum_probs=483.5
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~akll~~~a~~q 82 (525)
T TIGR02344 4 VLNQNTKRESG-RKAQLSNIQAAKAVADIIRTTLGPRAMLKMLLDPMGGIVMTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (525)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhcccCCCCCCceEEcCCCCEEEEccHHHHHHhccCCCHHHHHHHHHHHhh
Confidence 35666666566 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++ +|..+.+.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sk 158 (525)
T TIGR02344 83 DEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIP----VDVNDDAAMLKLIQSCIGTK 158 (525)
T ss_pred hhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCCCCHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999876 25567888999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCC---CCccccc-ceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEe
Q 008377 173 QF-GQEEILCPLIADACIQVCPKN---PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~---~~~~~l~-~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~ 245 (568)
.. .+.++|++++++|+..+++++ ...+|++ +|+|++++||+++||++++|++|++++. .||+.++||||++++
T Consensus 159 ~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (525)
T TIGR02344 159 FVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLD 238 (525)
T ss_pred cchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEe
Confidence 64 568999999999999997653 2245665 4899999999999999999999998863 689999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++|++.+++.++++.+++++++++++++|++++++++++|.+.+++||+++++|++.++++|.++||++++++++++|+|
T Consensus 239 ~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~Ler 318 (525)
T TIGR02344 239 CPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNR 318 (525)
T ss_pred cccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcc-eeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~ 404 (568)
||++|||++++++++++++.+|+ |+.|+++++|+++|++|++|+. +..+||+|||+|+.+++|.||+++||+++++++
T Consensus 319 Ia~~tGa~ii~~l~~l~~~~lG~~~~~v~~~~ig~~~~~~~~g~~~-~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~~ 397 (525)
T TIGR02344 319 IARACGATIVNRPEELRESDVGTGCGLFEVKKIGDEYFTFFTECKD-PKACTILLRGASKDVLNEIERNLQDAMAVARNV 397 (525)
T ss_pred HHHHhCCeEecchhhCCHhhcCCcCCEEEEEEECCeEEEEEEcCCC-CCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999974 889999999999999999999999999999999
Q ss_pred HhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCceeEe
Q 008377 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 483 (568)
Q Consensus 405 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~-~~~~Gid 483 (568)
++++++|||||++|++||.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.++|+|
T Consensus 398 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 477 (525)
T TIGR02344 398 LLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGID 477 (525)
T ss_pred HhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeEE
Confidence 999999999999999999999999888999999999999999999999999999999999999999999876 5789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 484 ~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 478 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 523 (525)
T TIGR02344 478 GETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRIDDIVSGVK 523 (525)
T ss_pred CCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhHHhhcCC
Confidence 9999999999999999999999999999999999999999998766
No 6
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.2e-103 Score=862.00 Aligned_cols=509 Identities=27% Similarity=0.433 Sum_probs=480.4
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcC--CCCeEEeccHHHHHhhccccChHHHHHHHHHHH
Q 008377 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (568)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~ 91 (568)
++++.+..++ ++++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+++|+++++++
T Consensus 2 ~~~~~~~~~~-~~a~~~n~~~~~~i~~~v~tslGP~G~~Kmi~~~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~ 80 (517)
T cd03336 2 LKDGAQEEKG-ETARLSSFVGAIAIGDLVKTTLGPKGMDKILQSVGRSGGVTVTNDGATILKSIGVDNPAAKVLVDISKV 80 (517)
T ss_pred CCCccccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEeecCCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 3455556566 4899999999999999999999999999999998 499999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhc
Q 008377 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (568)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~s 171 (568)
|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|.+.++++|++++++.-. -+.++.+.|.++++|+++|
T Consensus 81 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~-~~~~~~~~l~~ia~t~lss 159 (517)
T cd03336 81 QDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSS-DEEAFREDLLNIARTTLSS 159 (517)
T ss_pred HHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCccc-ccchhHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999999886310 0112467899999999999
Q ss_pred ccc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC-CCCcccccCceEEEEeeccc
Q 008377 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~-~~~~~~i~n~kIlll~~~Le 249 (568)
|+. .++++|++++++|+..+.+ .+++++|++++++||+++||++++|+++++.+ ..+|+.++||||++++++|+
T Consensus 160 k~~~~~~~~l~~l~~~A~~~v~~----~~~~~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~~~~~~~~n~kIli~~~~le 235 (517)
T cd03336 160 KILTQDKEHFAELAVDAVLRLKG----SGNLDAIQIIKKLGGSLKDSYLDEGFLLDKKIGVNQPKRIENAKILIANTPMD 235 (517)
T ss_pred cccchhHHHHHHHHHHHHHHhhc----cCCccceeEEEccCCCccceEEEeeEEEecccCCCCCCeeccccEEEEecCCC
Confidence 975 4689999999999999853 37888999999999999999999999999886 35799999999999999999
Q ss_pred cccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHH
Q 008377 250 TSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (568)
Q Consensus 250 ~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~ 328 (568)
+++++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|+|.+++||.++||++++++++++|+|||+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~ 315 (517)
T cd03336 236 TDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLAL 315 (517)
T ss_pred cccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999987 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCC
Q 008377 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (568)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~ 408 (568)
+|||++++++++++++++|+|+.|++..+|+++|++|++|+. ++.+||+|||+|+.+++|.+|+++||++++++++++|
T Consensus 316 ~tGa~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 316 VTGGEIASTFDHPELVKLGTCKLIEEIMIGEDKLIRFSGVAA-GEACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred HhCCEEecccCCCCcccccccceEEEEEECCeEEEEEEccCC-CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999984 8999999999999999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCc
Q 008377 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (568)
Q Consensus 409 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~ 488 (568)
++|||||++|+++|++|++++++.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 99999999999999999999988899999999999999999999999999999999999999999887888999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 489 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 515 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRVDDIIKCAP 515 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhHhHHhhcCC
Confidence 99999999999999999999999999999999999999866
No 7
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.6e-103 Score=862.39 Aligned_cols=511 Identities=28% Similarity=0.461 Sum_probs=481.7
Q ss_pred cccc--ccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 13 MLKE--GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 13 ~~~~--~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
++++ +.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|++++++
T Consensus 13 ~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~G~~~ITnDG~tIlk~l~~~hP~akll~~~a~ 91 (532)
T TIGR02343 13 IIKDQDKKKRLKG-LEAIKSNIAAAKSVASILRTSLGPKGMDKMLQSPDGDITVTNDGATILSQMDVDNPIAKLMVELSK 91 (532)
T ss_pred hhccccccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCEEEeCcHHHHHHHccCCCHHHHHHHHHHH
Confidence 4566 4556566 489999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++.. .+.++++.|.++++|+++
T Consensus 92 ~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~~l~~ia~t~l~ 169 (532)
T TIGR02343 92 SQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEIS--DDNNNKEPLIQAAKTSLG 169 (532)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccC--cCCCCHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988632 134567889999999999
Q ss_pred ccccC-cccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeec
Q 008377 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (568)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~ 247 (568)
+|+.+ +.++|++++++|+..+...+...+|+++|+|++++||+++||++++|++|++++. .||+.++||||++++++
T Consensus 170 sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~ 249 (532)
T TIGR02343 170 SKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCP 249 (532)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEee
Confidence 99654 5899999999999998653333689999999999999999999999999999874 68999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHH
Q 008377 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 248 Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
|++++++.+.++.+++++++..+.+.|++++++++++|++.|++||+++++|||.+++||.++||++++++++++|+|||
T Consensus 250 le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia 329 (532)
T TIGR02343 250 FEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIA 329 (532)
T ss_pred ccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeEEEEEEEcC--eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
++|||++++++++++++++|+|+.|+++++|+ ++|+++++|+. ++.+||+|||+|+.+++|.||+++||++++++++
T Consensus 330 ~~tGa~~i~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~i 408 (532)
T TIGR02343 330 IATGGRIVPRFEELSEDKLGKAGLVREISFGTTKDRMLVIEQCKN-SKAVTIFIRGGNKMIIEEAKRSIHDALCVVRNLI 408 (532)
T ss_pred HHhCCEEecccccCCHhHCcccceEEEEEecCCcceEEEEECCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999997 48999999974 7899999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCceeEec
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDL 484 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~-~~~~Gid~ 484 (568)
+++++|||||++|+++|++|++++...++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|..+ +.++|+|+
T Consensus 409 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 488 (532)
T TIGR02343 409 KNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVDC 488 (532)
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCeeC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999754 56799999
Q ss_pred cCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 485 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.+
T Consensus 489 ~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~id~ii~~ 531 (532)
T TIGR02343 489 LGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKIDDVISP 531 (532)
T ss_pred CCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhHhhhccC
Confidence 9999999999999999999999999999999999999999964
No 8
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-103 Score=861.72 Aligned_cols=510 Identities=28% Similarity=0.501 Sum_probs=482.2
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..++. +++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~~-~~~~~ni~a~~~i~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~akll~~~a~~q 82 (522)
T cd03340 4 LLKEGTDTSQGK-GQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGATILKLLDIVHPAAKTLVDIAKSQ 82 (522)
T ss_pred cccCCcccccHH-HHHHHHHHHHHHHHHHHhcCCCCCcCceEEEcCCCCEEEeccHHHHHHHccccCHHHHHHHHHHHHh
Confidence 568887777775 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|++.+++.|++++++.-...+..+++.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK 162 (522)
T cd03340 83 DAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSK 162 (522)
T ss_pred HhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999886211001124677999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-----CCcccccCceEEEEee
Q 008377 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVFAG 246 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~i~n~kIlll~~ 246 (568)
+. .+.++|++++++|+..+++ .+|+++|+|+++.||+++||++++|++|++++. .+|+.++||||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~----~~~~~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~ 238 (522)
T cd03340 163 LIASEKEFFAKMVVDAVLSLDD----DLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNV 238 (522)
T ss_pred cchhHHHHHHHHHHHHHHHhcc----cCChhHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeC
Confidence 75 5689999999999999965 367889999999999999999999999998863 4689999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHH
Q 008377 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 247 ~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~I 326 (568)
+|++.+++.+.++.++++++++.+.+.|+++++++++++.+.|++||+++++|+|.+++||.++||++++++++++|+||
T Consensus 239 ~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rI 318 (522)
T cd03340 239 ELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRV 318 (522)
T ss_pred CCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHh
Q 008377 327 CRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (568)
Q Consensus 327 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~ 406 (568)
|++|||++++++++++++.+|+|+.|++.++|+++|++|++|+. ++.+||+|||+++.+++|.+|+++||+++++++++
T Consensus 319 a~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~ 397 (522)
T cd03340 319 AQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGCPK-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIK 397 (522)
T ss_pred HHHHCCEEeeccccCCccccccceEEEEEEECCEEEEEEECCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999974 89999999999999999999999999999999999
Q ss_pred CCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CceeEecc
Q 008377 407 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGIDLE 485 (568)
Q Consensus 407 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~-~~~Gid~~ 485 (568)
+|++||||||+|++++++|++++++.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++ .++|+|+.
T Consensus 398 ~~~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~ 477 (522)
T cd03340 398 NDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDIN 477 (522)
T ss_pred CCCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999998876 68999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 478 ~g~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~id~ii~~~ 520 (522)
T cd03340 478 NEGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNP 520 (522)
T ss_pred CCcccchhhcCceEcHHHHHHHHHHHHHHHHHHhhhhhheeCC
Confidence 9999999999999999999999999999999999999999764
No 9
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=2.5e-103 Score=862.01 Aligned_cols=509 Identities=33% Similarity=0.583 Sum_probs=484.9
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..+|. +++..|+.||..+++++++||||+|++|||+++.|+++|||||+|||++|+++||+|+|+++++++|
T Consensus 3 ~~~~~~~~~~~~-~~~~~n~~~~~~i~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 81 (517)
T cd03343 3 ILKEGTQRTSGR-DAQRMNIAAAKAVAEAVRTTLGPKGMDKMLVDSLGDVTITNDGATILKEMDIEHPAAKMLVEVAKTQ 81 (517)
T ss_pred ccCCCcccccHH-HHHHHHHHHHHHHHHHHhCCCCCCCCCceeEcCCCCEEEEccHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 357777777774 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+++|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+. +..+.+.|.++++|+++||
T Consensus 82 ~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~l~~va~ts~~sk 157 (517)
T cd03343 82 DEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKV----DPDDKDTLRKIAKTSLTGK 157 (517)
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhccc----CCCCHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999998862 4457889999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCCC--CcccccceEEEEccCCCcccceeEeeEEEeecC--CCCcccccCceEEEEeec
Q 008377 173 QF-GQEEILCPLIADACIQVCPKNP--ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGG 247 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~--~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~--~~~~~~i~n~kIlll~~~ 247 (568)
+. .+.++|++++++|+.++++++. ..+|+++|+|.+++||+++||++++|++|++++ ..||+.++||||++++++
T Consensus 158 ~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~ 237 (517)
T cd03343 158 GAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAP 237 (517)
T ss_pred chhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEecc
Confidence 75 4578999999999999976432 258889999999999999999999999999987 358899999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHH
Q 008377 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 248 Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
||+++++.++++.+++.+++.++.++|++++++++++|++.|++||+++++|++.+++||.++||++++++++++|+|||
T Consensus 238 Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia 317 (517)
T cd03343 238 LEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLA 317 (517)
T ss_pred ccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhC
Q 008377 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (568)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~ 407 (568)
++|||++++++++++++.+|+|+.|++.++|+++|++|++|+. +..+||+|||+|+.+++|.+|+++||++++|+++++
T Consensus 318 ~~tGa~ii~~~~~l~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~~ 396 (517)
T cd03343 318 RATGAKIVTNIDDLTPEDLGEAELVEERKVGDDKMVFVEGCKN-PKAVTILLRGGTEHVVDELERALEDALRVVADALED 396 (517)
T ss_pred HHhCCEEecchhhCChhhCCccceEEEEEECCeEEEEEEcCCC-CceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999874 789999999999999999999999999999999999
Q ss_pred CCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCC
Q 008377 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG 487 (568)
Q Consensus 408 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~ 487 (568)
|++|||||++|+++|.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|
T Consensus 397 ~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 476 (517)
T cd03343 397 GKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYTG 476 (517)
T ss_pred CCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCCC
Confidence 99999999999999999999988889999999999999999999999999999999999999999987777899999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 488 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 488 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
++.||++.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 477 ~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~ 516 (517)
T cd03343 477 EVVDMLEKGVIEPLRVKKQAIKSATEAATMILRIDDVIAA 516 (517)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHHhhhHhhhC
Confidence 9999999999999999999999999999999999999965
No 10
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.8e-103 Score=859.12 Aligned_cols=499 Identities=29% Similarity=0.527 Sum_probs=477.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHH
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (568)
.+++.+|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||++
T Consensus 8 ~~~~~~ni~a~~~ia~~~kttlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDGTtt~v 87 (517)
T TIGR02342 8 TDVRTSNIVAAKAVADAIRTSLGPRGMDKMIQSGNGEVIITNDGATILKQMGVIHPAAKMLVELSKAQDIEAGDGTTSVV 87 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEEcCCCCEEEeCCHHHHHHhccccChHHHHHHHHHHHHHHHhCCCcchHH
Confidence 36779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-CcccchHHH
Q 008377 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (568)
Q Consensus 105 lL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~~~ls~l 183 (568)
+|+++||+++.+|+++|+||+.|++||+.|++.++++|+++++| ++..+.+.|.++++|++++|+. .+.++|+++
T Consensus 88 iLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l 163 (517)
T TIGR02342 88 ILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIP----VDLSDREILIKSATTSLSSKVVSQYSSLLAPL 163 (517)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cCccCHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999886 2455788999999999999964 678999999
Q ss_pred HHHHHHHhcCC-CCCcccccceEEEEccCCCcccceeEeeEEEeecCC---CCcccccCceEEEEeeccccccccccceE
Q 008377 184 IADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---GSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (568)
Q Consensus 184 v~~a~~~~~~~-~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~---~~~~~i~n~kIlll~~~Le~~~~~~~~~i 259 (568)
+++|+..++++ ....+|+++|+|+++.||+++||++++|++|++++. +||+.++|+||++++++|++++++...++
T Consensus 164 ~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~~~~ 243 (517)
T TIGR02342 164 AVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDMENQV 243 (517)
T ss_pred HHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCcccccceE
Confidence 99999999763 123589999999999999999999999999999874 57999999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----cHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCee
Q 008377 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (568)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~i 334 (568)
.+.++++++.+.++|+++++++++++.+.|++||+|+++| ++.+++||.++||++++++++++|+|||++|||++
T Consensus 244 ~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tGa~i 323 (517)
T TIGR02342 244 IVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIGCKP 323 (517)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCC
Q 008377 335 MLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (568)
Q Consensus 335 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGG 414 (568)
++++++++++++|+|+.|++.++++++|+++++++..++.+||+|||+|+.+++|.+|+++||+++++++++++++||||
T Consensus 324 i~~~~~l~~~~LG~~~~v~~~~~~~~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~~~~VpGG 403 (517)
T TIGR02342 324 IASIDHFTADKLGSAELVEEVTTDGGKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKKRGLIPGG 403 (517)
T ss_pred EcchhhcCcccCcCCceEEEEEECCeEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECc
Confidence 99999999999999999999999999999999997545899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCccccccc
Q 008377 415 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 494 (568)
Q Consensus 415 G~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~ 494 (568)
|++|+++|++|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+|++.||++
T Consensus 404 Ga~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~i~d~~~ 483 (517)
T TIGR02342 404 GAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKGGITDMLE 483 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCCCccchhh
Confidence 99999999999999888899999999999999999999999999999999999999999887788999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 495 MNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 495 ~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
.|||||+.+|+++|+.|+|+|++|||||++|..
T Consensus 484 ~gI~dp~~vk~~ai~~A~e~a~~iL~iD~ii~~ 516 (517)
T TIGR02342 484 EEVLQPLLVTTSAVTLASETVRMILKIDDIVFT 516 (517)
T ss_pred ccceEcHHHHHHHHHHHHHHHHHHhcccceeec
Confidence 999999999999999999999999999999875
No 11
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.6e-103 Score=861.93 Aligned_cols=503 Identities=31% Similarity=0.500 Sum_probs=474.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCch
Q 008377 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (568)
.++ ++++..|+.||..+++++++||||+||+|||+++.|+++|||||+||+++|+++||+++|+++++++|++++||||
T Consensus 4 ~~~-~~~~~~ni~a~~~l~~~v~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~q~~~~GDGT 82 (527)
T cd03335 4 TSG-QDVRTQNVTAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDKEVGDGT 82 (527)
T ss_pred ccH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeCcHHHHHHhccccChHHHHHHHHHHHHHHHhCCCc
Confidence 345 4899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHHHHHHhhhccccC-ccc
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQFG-QEE 178 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~-~~~ 178 (568)
||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++ ++++ ++..+++.|.++++|+++||+.+ +.+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~ia~tsl~sK~~~~~~~ 158 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSIS----VDNLGKESLINVAKTSMSSKIIGADSD 158 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCccCHHHHHHHHHHHhcccccchhHH
Confidence 99999999999999999999999999999999999999999996 7765 24457889999999999999754 468
Q ss_pred chHHHHHHHHHHhcC--C-CCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccc
Q 008377 179 ILCPLIADACIQVCP--K-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSAT 253 (568)
Q Consensus 179 ~ls~lv~~a~~~~~~--~-~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~ 253 (568)
+|++++++|+..++. . +...+++++|+|+++.||+++||++++|++|++++. +||+.++||||++++++|++.++
T Consensus 159 ~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~ 238 (527)
T cd03335 159 FFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKM 238 (527)
T ss_pred HHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcc
Confidence 999999999999853 2 222488899999999999999999999999998874 68999999999999999999999
Q ss_pred cccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 254 ETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 254 ~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
+.++++.++++++++.+.+.|++++++++++|.+.|++||+++++|+|.+++||.++||++++++++++|+|||++|||+
T Consensus 239 ~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ 318 (527)
T cd03335 239 KLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGAT 318 (527)
T ss_pred ccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCC------CCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhC
Q 008377 334 AMLKLCQPN------PDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (568)
Q Consensus 334 ii~~~~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~ 407 (568)
+++++++++ ++++|+|+.|+++++++++|++|++|+. ++.+||+|||+|+.+++|.+|+++||++++++++++
T Consensus 319 ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~g~~~-~~~~TIllrG~t~~~l~e~er~i~Dal~~~~~~~~~ 397 (527)
T cd03335 319 LVSTLANLEGEETFDPSYLGEAEEVVQERIGDDELILIKGTKK-RSSASIILRGANDFMLDEMERSLHDALCVVKRTLES 397 (527)
T ss_pred EecChhhcCcccccCHhhCccCceEEEEEECCeEEEEEEcCCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999886653 4479999999999999999999999974 899999999999999999999999999999999999
Q ss_pred CCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CCc
Q 008377 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KTK 479 (568)
Q Consensus 408 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~--------~~~ 479 (568)
|++|||||++|++++.+|+++++..++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.+
T Consensus 398 ~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~~~~~ 477 (527)
T cd03335 398 NSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKKHLKW 477 (527)
T ss_pred CCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccccCce
Confidence 999999999999999999999888999999999999999999999999999999999999999999775 457
Q ss_pred eeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 480 VGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 480 ~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+|+|+.+|++.||++.|||||+.+|.++|++|+|+|++|||||++|..+|
T Consensus 478 ~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrID~ii~~~~ 527 (527)
T cd03335 478 YGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRIDDLIKLNP 527 (527)
T ss_pred EeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhcceeecCC
Confidence 89999999999999999999999999999999999999999999997754
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=4.2e-103 Score=860.07 Aligned_cols=510 Identities=27% Similarity=0.453 Sum_probs=479.6
Q ss_pred cccccc--ccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 13 MLKEGH--KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 13 ~~~~~~--~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
+++++. +...+ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~ni~~~~~i~~~v~tslGP~G~~kmi~~~~G~~~iTnDG~tIlk~l~~~hP~akll~~~a~ 87 (526)
T cd03339 9 IVREQEKKKRLKG-LEAHKSHILAAKSVANILRTSLGPRGMDKILVSPDGEVTVTNDGATILEKMDVDHQIAKLLVELSK 87 (526)
T ss_pred EecCCCccccccH-HHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEECCCCCEEEeCcHHHHHHHhcccCHHHHHHHHHHH
Confidence 457763 44455 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+|++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++.. .+..+.+.|.++++|+++
T Consensus 88 ~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~--~~~~~~~~l~~ia~tsl~ 165 (526)
T cd03339 88 SQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIE--FSPDNKEPLIQTAMTSLG 165 (526)
T ss_pred hhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccC--CCcccHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999988632 133468889999999999
Q ss_pred ccccC-cccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeec
Q 008377 171 SKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGG 247 (568)
Q Consensus 171 sk~~~-~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~ 247 (568)
+|+.+ +.++|++++++|+..+.+.....+|+++|+|.+++||+++||++++|++|++++. .||+.++||||++++++
T Consensus 166 sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~ 245 (526)
T cd03339 166 SKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCP 245 (526)
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEec
Confidence 99754 5799999999999998653333578899999999999999999999999999875 68999999999999999
Q ss_pred cccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHH
Q 008377 248 VDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 248 Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
|++++++.+.++.++++++++++.++|+++++++++++++.|++||+++++|+|.+++||.++||++++++++++|+|||
T Consensus 246 le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa 325 (526)
T cd03339 246 FEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIA 325 (526)
T ss_pred ccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCeecccCCCCCCCCCcceeEEEEEEEcC--eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 328 RTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 328 ~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
++|||++++++++++++.+|+|+.|++.++|. ++|++|++|+ +++.+||+|||+|+.+++|.+|+++||++++++++
T Consensus 326 ~~tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~~~~~~~~i~g~~-~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~~ 404 (526)
T cd03339 326 IATGGRIVPRFEDLSPEKLGKAGLVREISFGTTKDKMLVIEGCP-NSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRNLI 404 (526)
T ss_pred HHhCCEEecchhhCChhhcccCceEEEEEecCCCcEEEEEECCC-CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999985 6889999997 48899999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCceeEec
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDL 484 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~-~~~~Gid~ 484 (568)
++|++|||||++|+++|.+|++++...++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.++|+|+
T Consensus 405 ~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~ 484 (526)
T cd03339 405 RDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGIDC 484 (526)
T ss_pred hCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeeec
Confidence 99999999999999999999999888899999999999999999999999999999999999999999653 56799999
Q ss_pred cCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhh
Q 008377 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLK 526 (568)
Q Consensus 485 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (568)
.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 485 ~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (526)
T cd03339 485 LGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKIDDVIV 526 (526)
T ss_pred CCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhhceecC
Confidence 999999999999999999999999999999999999999873
No 13
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=8.7e-103 Score=857.44 Aligned_cols=512 Identities=27% Similarity=0.449 Sum_probs=483.0
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcC-----CCCeEEeccHHHHHhhccccChHHHHH
Q 008377 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH-----LDKLFVTNDAATIVNELEVQHPAAKLL 85 (568)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~-----~g~~~iTnDG~tIl~~l~~~hP~a~ll 85 (568)
..+++++.+..++ ++++..|+.||..++++++|||||+||+|||+++ .|+++|||||+|||++|+++||+|+|+
T Consensus 8 ~~~~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~Kmi~~~~~~~~~G~~~iTnDG~TIlk~i~~~hP~akll 86 (533)
T PTZ00212 8 PQVLKQGAQEEKG-ETARLQSFVGAIAVADLVKTTLGPKGMDKILQPMSEGPRSGNVTVTNDGATILKSVWLDNPAAKIL 86 (533)
T ss_pred hHHhcCCcccccH-HHHHHHHHHHHHHHHHHHhCCCCCCccceEeecCCCcccCCCEEEeccHHHHHHhccCcCHHHHHH
Confidence 3467888777777 5899999999999999999999999999999998 599999999999999999999999999
Q ss_pred HHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHH
Q 008377 86 VLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRM 165 (568)
Q Consensus 86 ~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~ 165 (568)
++++++|++++||||||+|+|+++||+++.+|+++|+||..|++||+.|++.++++|++++++... -+..+.+.|.+++
T Consensus 87 ~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~-~~~~~~~~l~~va 165 (533)
T PTZ00212 87 VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGS-DEEKFKEDLLNIA 165 (533)
T ss_pred HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCc-cchhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999886310 0111267899999
Q ss_pred HHhhhccccC-cccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-CCcccccCceEEE
Q 008377 166 KAAVASKQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAV 243 (568)
Q Consensus 166 ~t~l~sk~~~-~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-~~~~~i~n~kIll 243 (568)
+|+++||+.+ +.++|++++++|+..+.+ .+++++|++++++||+++||++++|+++++++. .||+.++||||++
T Consensus 166 ~t~l~sk~~~~~~~~l~~i~~~av~~i~~----~~~~~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~~~~~~i~n~kIll 241 (533)
T PTZ00212 166 RTTLSSKLLTVEKDHFAKLAVDAVLRLKG----SGNLDYIQIIKKPGGTLRDSYLEDGFILEKKIGVGQPKRLENCKILV 241 (533)
T ss_pred HHHhcccccchhHHHHHHHHHHHHHHHhc----cCCccceEEEEecCcCccccEEEEeEEEecccCCCCCccccCCcEEE
Confidence 9999999754 578999999999999864 378889999999999999999999999998763 5799999999999
Q ss_pred Eeeccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhH
Q 008377 244 FAGGVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFE 322 (568)
Q Consensus 244 l~~~Le~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~ 322 (568)
++++||+++++. ++++.+++++++..+.+.|+++++++++.|++.|+++|+++++|+|.+++||.++||++++++++++
T Consensus 242 ~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~ 321 (533)
T PTZ00212 242 ANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDG 321 (533)
T ss_pred EeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHH
Confidence 999999999998 7889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHH
Q 008377 323 LRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (568)
Q Consensus 323 Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~ 402 (568)
++|||++|||++++++++++++++|+|+.|++..+|+++|++|++|+. ++.+||+|||+|+.+++|.||+++||+++++
T Consensus 322 l~rIa~~tGa~iis~l~~~~~~~LG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TI~lrG~t~~~l~E~er~i~DAl~vv~ 400 (533)
T PTZ00212 322 MERLAAALGAEIVSTFDTPEKVKLGHCDLIEEIMIGEDKLIRFSGCAK-GEACTIVLRGASTHILDEAERSLHDALCVLS 400 (533)
T ss_pred HHHHHHHhCCEEeecCCCCCHHHccCCceEEEEEECCeEEEEEEccCC-CCEEEEEEECCChhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999974 8899999999999999999999999999999
Q ss_pred HHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeE
Q 008377 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 482 (568)
Q Consensus 403 ~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gi 482 (568)
+++++|++||||||+|+++|.+|++++++..+++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+
T Consensus 401 ~~i~~~~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~ 480 (533)
T PTZ00212 401 QTVKDTRVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGI 480 (533)
T ss_pred HHhhCCCEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccce
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999887788999
Q ss_pred eccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 483 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 483 d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
|+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 481 d~~~g~i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~ 527 (533)
T PTZ00212 481 DMEKGTVGDMKELGITESYKVKLSQLCSATEAAEMILRVDDIIRCAP 527 (533)
T ss_pred eccCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhhhHhhhcCC
Confidence 99999999999999999999999999999999999999999998865
No 14
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.1e-102 Score=846.48 Aligned_cols=509 Identities=25% Similarity=0.431 Sum_probs=479.5
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCC--CCeEEeccHHHHHhhccccChHHHHHHHHHHH
Q 008377 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (568)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~--g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~ 91 (568)
++++.+..++ .+++..|+.||..++++++|||||+||+|||+++. |+++|||||+|||++|+++||+++|+++++++
T Consensus 3 ~~~~~~~~~~-~~a~~~ni~a~~~i~~~vkttlGP~G~~KmI~~~~~~G~~~iTnDG~tIlk~l~i~hP~akll~~~a~~ 81 (519)
T TIGR02341 3 FKDNAQEERG-ENARLSSFVGAIAIGDLVKSTLGPKGMDKILQSGSSESGIMVTNDGATILKSIGVDNPAAKVLVDMSKV 81 (519)
T ss_pred ccCCCccccH-HHHHHHHHHHHHHHHHHHhcCCCCCcCceEEeccCCCCCeEEeccHHHHHHHccCcChHHHHHHHHHHH
Confidence 4566666666 48999999999999999999999999999999985 99999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhc
Q 008377 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (568)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~s 171 (568)
|++++||||||+|+|+++||++|.+|+++|+||+.|++||+.|.+.++++|++++++...+ +..+.+.|.++++|++++
T Consensus 82 qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~-~~~~~~~L~~ia~t~l~s 160 (519)
T TIGR02341 82 QDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSD-KTKFRDDLLNIARTTLSS 160 (519)
T ss_pred hHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCc-ccccHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999998863110 112468899999999999
Q ss_pred cccC-cccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-CCcccccCceEEEEeeccc
Q 008377 172 KQFG-QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 172 k~~~-~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-~~~~~i~n~kIlll~~~Le 249 (568)
|+.+ +.+.|++++++|+..+.+. .++++|++.+++|++++||++++|+++++.+. .+|+.++||||++++++|+
T Consensus 161 ki~~~~~~~~s~l~~~av~~i~~~----~~~~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~~~~~~~~n~~Ili~~~~Le 236 (519)
T TIGR02341 161 KILSQHKDHFAQLAVDAVLRLKGS----GNLDAIQIIKKLGGSLNDSYLDEGFLLEKKIGVNQPKRIENAKILIANTPMD 236 (519)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccC----CChhheEEEEccCCCcccceEEeeEEEeccCCCCCceeeccccEEEEecCCC
Confidence 9754 5789999999999998532 46778999999999999999999999999875 5789999999999999999
Q ss_pred cccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHH
Q 008377 250 TSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (568)
Q Consensus 250 ~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~ 328 (568)
+++++. ++++.+++++++..+.+.|+++++++++.|++.|++++++++.|+|.+++||.+++|++++++++++|+|||+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~ 316 (519)
T TIGR02341 237 TDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLAL 316 (519)
T ss_pred CCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHH
Confidence 999997 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCC
Q 008377 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (568)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~ 408 (568)
+|||++++++++++++++|+|+.|++..+|+++|++|++|+. ++.+||+|||+|+.+++|.+|+++||+++++++++++
T Consensus 317 ~tGa~ii~~~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 317 VTGGEIVSTFDHPELVKLGSCDLIEEIMIGEDKLLKFSGVKL-GEACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred HhCCEEecccccCCccccccCceEEEEEECCEEEEEEEcCCC-CCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999984 8899999999999999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCc
Q 008377 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (568)
Q Consensus 409 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~ 488 (568)
++||||||+|++++++|++++++.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+|+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 99999999999999999999888899999999999999999999999999999999999999999887778999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 489 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+.||++.|||||+.+|+++|+.|+|+|++|||||++|..+|
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~~ 516 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAAEAAEVILRVDNIIKAAP 516 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCC
Confidence 99999999999999999999999999999999999999877
No 15
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.9e-102 Score=849.63 Aligned_cols=509 Identities=29% Similarity=0.477 Sum_probs=482.4
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..++. +++..|+.||..++++++|||||+|++|||+++.| ++|||||+|||++|+++||+++|+++++++|
T Consensus 6 ~~~~~~~~~~~~-~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g-~~iTnDG~TIlk~i~~~hP~a~ll~~~a~~q 83 (522)
T TIGR02345 6 LLKEGTDTSQGK-GQLISNINACVAIAEILKTTLGPRGMDKLIVGKNG-ATVSNDGATILKLLDIVHPAAKTLVDIAKSQ 83 (522)
T ss_pred hhcCCcccccHH-HHHHHHHHHHHHHHHHHhCCCCCCCCceEEECCCC-cEEeCcHHHHHHHhcccChHHHHHHHHHHHH
Confidence 568887777775 89999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+|+|+++||+++.+|+++|+||+.|++||+.|.+.++++|++++++. ...+..+.+.|.++++|+++||
T Consensus 84 ~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~-~~~~~~~~~~l~~va~tsl~sK 162 (522)
T TIGR02345 84 DSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTI-DEVKGEQREVLEKCAATALNSK 162 (522)
T ss_pred HHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCc-CCcccccHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998862 2112235678999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC-----CCCcccccCceEEEEee
Q 008377 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-----VGSIKNMEKAKVAVFAG 246 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~-----~~~~~~i~n~kIlll~~ 246 (568)
+. .++++|++++++|+.+++++ .+|+++|+|+++.||+++||++++|++|++++ .++|+.++||||+++++
T Consensus 163 ~~~~~~~~l~~l~~~A~~~v~~~---~~~~~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~ 239 (522)
T TIGR02345 163 LIAHEKEFFSKMIVDAVLQLDID---DLDLKLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNV 239 (522)
T ss_pred cccchHHHHHHHHHHHHHHHhhc---cCChhHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEec
Confidence 75 56899999999999999753 48889999999999999999999999999885 34689999999999999
Q ss_pred ccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHH
Q 008377 247 GVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 247 ~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~I 326 (568)
+|++.+++.+..+.++++++++.+.+.|+++++++++++.+.|++||+++++|++.+++||.+++|+++++++.++++++
T Consensus 240 ~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ri 319 (522)
T TIGR02345 240 ELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRV 319 (522)
T ss_pred CcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHH
Confidence 99999999899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHh
Q 008377 327 CRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (568)
Q Consensus 327 a~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~ 406 (568)
+++|||++++++++++++.+|+|+.|+++++++++|++|++++. ++.+||+|||+|+.+++|.+|+++||+++++++++
T Consensus 320 a~~tga~ii~~~~~l~~~~LG~~~~ie~~~~~~~r~~~~~g~~~-~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~ 398 (522)
T TIGR02345 320 VKACGGSIQSTTSDLEADVLGTCALFEERQIGSERYNYFTGCPH-AKTCTIILRGGAEQFIEEAERSLHDAIMIVRRALK 398 (522)
T ss_pred HHHhCCeEEcchhhCChhhccCCceEEEEEECCeEEEEEEcCCC-CceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999974 88999999999999999999999999999999999
Q ss_pred CCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccC
Q 008377 407 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLEN 486 (568)
Q Consensus 407 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~ 486 (568)
++++|||||++|++++++|++++.+..+++|+++++||+||+.||++|++|||+|+.+++.+|++.|..++.++|+|+.+
T Consensus 399 ~~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~ 478 (522)
T TIGR02345 399 ARKIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINT 478 (522)
T ss_pred CCCEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999998777789999999
Q ss_pred CcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 487 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 487 ~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
|++.||++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 479 ~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~id~ii~~~ 520 (522)
T TIGR02345 479 EDIGDNFENFVWEPLLVKKNALKAAFEAACTILSIDETIMNP 520 (522)
T ss_pred CcccchhhcCceEcHHHHHHHHHHHHHHHHHHHhHHHHHhCC
Confidence 999999999999999999999999999999999999999763
No 16
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.2e-102 Score=849.54 Aligned_cols=499 Identities=30% Similarity=0.535 Sum_probs=476.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHH
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (568)
.+.+..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|++++||||||++
T Consensus 7 ~~~~~~ni~a~~~i~~~v~ttlGP~G~~k~i~~~~g~~~iTnDG~tIlk~l~~~hp~a~ll~~~a~~q~~~~GDGTtt~v 86 (515)
T cd03338 7 ADVRLSNIQAAKAVADAIRTSLGPRGMDKMIQTGKGEVIITNDGATILKQMSVLHPAAKMLVELSKAQDIEAGDGTTSVV 86 (515)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeeeeCCCCCEEEECcHHHHHHhCcCcCHHHHHHHHHHHHHHhHhcCCcchHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-CcccchHHH
Q 008377 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (568)
Q Consensus 105 lL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~~~ls~l 183 (568)
+|+++|++++.+++++|+||..|++||+.|.+.++++|++++.+ ++..+.+.|.++++|+++||+. .++++|+++
T Consensus 87 vLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~----v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~l 162 (515)
T cd03338 87 VLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIP----VDLNDRESLIKSATTSLNSKVVSQYSSLLAPI 162 (515)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccC----CCCCCHHHHHHHHHHHhccccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999876 2455788999999999999974 568899999
Q ss_pred HHHHHHHhcCCCC-CcccccceEEEEccCCCcccceeEeeEEEeecCCC---CcccccCceEEEEeeccccccccccceE
Q 008377 184 IADACIQVCPKNP-ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG---SIKNMEKAKVAVFAGGVDTSATETKGTV 259 (568)
Q Consensus 184 v~~a~~~~~~~~~-~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~---~~~~i~n~kIlll~~~Le~~~~~~~~~i 259 (568)
+++|+.++++++. ..+|+++|+|.+..||+++||++++|++|++++.+ +|+.++|||+++++++|++++++.+.++
T Consensus 163 i~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~~~~ 242 (515)
T cd03338 163 AVDAVLKVIDPATATNVDLKDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMDNNI 242 (515)
T ss_pred HHHHHHHhhcccccCcCCHHHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccCceE
Confidence 9999999987542 46899999999999999999999999999999853 4899999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----cHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCee
Q 008377 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (568)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~i 334 (568)
.++++++++.+.++|+++++.+++++++.|++||+++++| ++.+++||.++||++++++++++|+|||++|||++
T Consensus 243 ~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tGa~i 322 (515)
T cd03338 243 VVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIGCKP 322 (515)
T ss_pred EeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHCCEE
Confidence 9999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCC
Q 008377 335 MLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGA 414 (568)
Q Consensus 335 i~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGG 414 (568)
++++++++++.+|+|+.|++.++|+++|++|++++.+++.+||+|||+|+.+++|.+|+++||++++++++++|++||||
T Consensus 323 i~sl~~l~~~~LG~~~~v~~~~~g~~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~~~vvpGG 402 (515)
T cd03338 323 VASIDHFTEDKLGSADLVEEVSLGDGKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKKRALIPGG 402 (515)
T ss_pred ecccccCCHhhCCCCceEEEEEECCeEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhCCCEEECC
Confidence 99999999999999999999999999999999997436899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCccccccc
Q 008377 415 AATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIST 494 (568)
Q Consensus 415 G~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~ 494 (568)
||+|++|+++|++++...++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.||++
T Consensus 403 G~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g~~~d~~~ 482 (515)
T cd03338 403 GAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKGAITNILE 482 (515)
T ss_pred CHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCCCccchhh
Confidence 99999999999999888889999999999999999999999999999999999999999877788999999999999999
Q ss_pred CCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 495 MNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 495 ~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
.|||||+.+|+++++.|+|+|++|||||++|..
T Consensus 483 ~gI~dp~~vk~~~l~~A~~~a~~iL~ID~ii~~ 515 (515)
T cd03338 483 ENVVQPLLVSTSAITLATETVRMILKIDDIVLA 515 (515)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHhccchhhcC
Confidence 999999999999999999999999999999863
No 17
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.6e-101 Score=847.06 Aligned_cols=507 Identities=30% Similarity=0.486 Sum_probs=475.3
Q ss_pred cccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCc
Q 008377 20 HMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDG 99 (568)
Q Consensus 20 ~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDG 99 (568)
..++ .+++..|++||..|++++++||||+|++|||+++.|+++|||||+||+++|+++||+|+|+++++++|++++|||
T Consensus 7 ~~~~-~~~~~~ni~~~~~l~~~vkttlGP~G~~k~I~~~~g~~~iTnDG~tIlk~i~~~hP~akll~~~a~~qd~~~GDG 85 (536)
T TIGR02340 7 RTSG-QDVRTQNVTAAMAIANIVKTSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKILVELAQLQDREVGDG 85 (536)
T ss_pred eecH-HHHHHHHHHHHHHHHHHHhcCcCCCcCceEEEcCCCCEEEeccHHHHHHHhcccChHHHHHHHHHHHHHHHhCCC
Confidence 3345 489999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhh-hhcccCCCCCCCHHHHHHHHHHhhhcccc-Ccc
Q 008377 100 ANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEEL-VEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (568)
Q Consensus 100 ttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~-~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~ 177 (568)
|||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++. +++ ++..+.+.|.++++|+++||+. .++
T Consensus 86 TTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~~l~~va~tsl~sK~~~~~~ 161 (536)
T TIGR02340 86 TTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVS----VDELGREALINVAKTSMSSKIIGLDS 161 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----CCcccHHHHHHHHHHHhccccchhhH
Confidence 9999999999999999999999999999999999999999999975 664 2444788899999999999975 458
Q ss_pred cchHHHHHHHHHHhcC---CCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeecccccc
Q 008377 178 EILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSA 252 (568)
Q Consensus 178 ~~ls~lv~~a~~~~~~---~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~ 252 (568)
++|++++++|+..++. ++...+++++|+++++.||+++||++++|++|++++. +||+.++||||++++++|++.+
T Consensus 162 ~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~ 241 (536)
T TIGR02340 162 DFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQK 241 (536)
T ss_pred HHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCc
Confidence 8999999999999863 2223578899999999999999999999999998874 6899999999999999999999
Q ss_pred ccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 253 TETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 253 ~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
++.++++.++++.+++.+.+.|++++++++++|++.+++||+++++|++.+++||.++||++++++++++|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa 321 (536)
T TIGR02340 242 MALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGG 321 (536)
T ss_pred ccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCC------CCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHh
Q 008377 333 VAMLKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (568)
Q Consensus 333 ~ii~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~ 406 (568)
++++++.++ ++..+|+|+.|+++++++++|++|++++ +++.+||+|||+|+.+++|.+|+++||+++++++++
T Consensus 322 ~ii~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~-~~~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~~~~ 400 (536)
T TIGR02340 322 TLVSTLADLEGEETFDASYLGFADEVVEERIADDECILIKGTK-GRKSASIILRGANDFMLDEMERSLHDALCVVKRTLE 400 (536)
T ss_pred EEecchhhcCccccccccccccCceEEEEEECCeEEEEEEcCC-CCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988654 4456999999999999999999999987 478999999999999999999999999999999999
Q ss_pred CCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC--------CC
Q 008377 407 DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG--------KT 478 (568)
Q Consensus 407 ~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~--------~~ 478 (568)
+|++|||||++|++++++|+++++..++++++++++||+||+.||++|++|||+|+.+++.+|++.|..+ +.
T Consensus 401 ~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~~~~ 480 (536)
T TIGR02340 401 SNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKKHLK 480 (536)
T ss_pred CCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccccCc
Confidence 9999999999999999999998888889999999999999999999999999999999999999999765 34
Q ss_pred ceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccCC
Q 008377 479 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINR 532 (568)
Q Consensus 479 ~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~~ 532 (568)
++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|..+|+++
T Consensus 481 ~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~ID~ii~~~~~~~ 534 (536)
T TIGR02340 481 WYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRIDDLIKLNPEQS 534 (536)
T ss_pred eEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCCC
Confidence 789999999999999999999999999999999999999999999999877443
No 18
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.4e-99 Score=823.05 Aligned_cols=477 Identities=26% Similarity=0.439 Sum_probs=450.0
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhh
Q 008377 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (568)
Q Consensus 16 ~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (568)
++.+..++ .+++..|+.||..++++++|||||+||+|||+++.|+++|||||+|||++|+++||+++|+++++++|+++
T Consensus 3 ~~~~~~~~-~~~~~~ni~a~~~l~~~vkttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hP~a~l~~~~a~~qd~~ 81 (484)
T cd03342 3 PKAEVLRR-GQALAVNISAAKGLQDVLKTNLGPKGTLKMLVSGAGDIKLTKDGNVLLSEMQIQHPTASMIARAATAQDDI 81 (484)
T ss_pred CCcccccH-HHHHHHHHHHHHHHHHHHhcCcCCCCCceEEECCCCCEEEeccHHHHHHhccCcCHHHHHHHHHHHHhhhH
Confidence 34455556 48999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCHHHHHHHHHHhhhccc-
Q 008377 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ- 173 (568)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~-~~~~~l~~i~~t~l~sk~- 173 (568)
+||||||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.+. +. .|.+.|.++++|++++|+
T Consensus 82 ~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v----~~~~~~~~l~~va~ts~~sk~~ 157 (484)
T cd03342 82 TGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPV----EIDTDRELLLSVARTSLRTKLH 157 (484)
T ss_pred hCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999999999999998752 22 478899999999999996
Q ss_pred cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccc
Q 008377 174 FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 174 ~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~ 251 (568)
..+.++|++++++|+..+++++ ..+|+++|+++++.||+++||++++|++|++++. .||+.++||||++++++|+++
T Consensus 158 ~~~~~~l~~l~~~A~~~v~~~~-~~~~~~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~ 236 (484)
T cd03342 158 ADLADQLTEIVVDAVLAIYKPD-EPIDLHMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYE 236 (484)
T ss_pred hhHHHHHHHHHHHHHHHHhhcC-CccChhHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCC
Confidence 4568999999999999998754 2689999999999999999999999999998873 579999999999999999999
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhC
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tG 331 (568)
+++...++.++ ||+|+++|+|.+++||.++||++++++++++|+|||++||
T Consensus 237 ~~~~~~~~~~~-----------------------------lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tG 287 (484)
T cd03342 237 KTEVNSGFFYS-----------------------------VVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACG 287 (484)
T ss_pred ccccCcEEEEE-----------------------------EEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC
Confidence 88877665542 9999999999999999999999999999999999999999
Q ss_pred CeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcc
Q 008377 332 AVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIV 411 (568)
Q Consensus 332 a~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vv 411 (568)
|++++++++++++++|+|+.|+++.+|+++|++|++++. ++.+||+|||+|+.+++|.||+++||++++++++++|++|
T Consensus 288 a~ii~~l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~-~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 288 GVAMNSVDDLSPECLGYAGLVYERTLGEEKYTFIEGVKN-PKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred CEEecccccCChhhCcccceEEEEEECCeEEEEEECCCC-CcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 999999999999999999999999999999999999974 8899999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccc
Q 008377 412 PGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCAD 491 (568)
Q Consensus 412 pGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d 491 (568)
|||||+|++++.+|++++...++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|++.|
T Consensus 367 pGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d 446 (484)
T cd03342 367 PGAGAFEVALYAHLKEFKKSVKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMD 446 (484)
T ss_pred eCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccc
Confidence 99999999999999999888899999999999999999999999999999999999999999887778999999999999
Q ss_pred cccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 492 ISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 492 ~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
|++.|||||+.+|+++|+.|+|+|++|||||++|..+
T Consensus 447 ~~~~gI~dp~~vk~~~l~~A~e~a~~iL~ID~ii~~~ 483 (484)
T cd03342 447 PESEGIWDNYSVKRQILHSATVIASQLLLVDEIIRAG 483 (484)
T ss_pred hhhcCcEEcHHHHHHHHHHHHHHHHHHhhhhHhhhcC
Confidence 9999999999999999999999999999999999764
No 19
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-101 Score=755.27 Aligned_cols=500 Identities=28% Similarity=0.530 Sum_probs=479.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHH
Q 008377 24 LDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLT 103 (568)
Q Consensus 24 ~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~ 103 (568)
.++.+.+||.|++++++.++|||||+||||||+.+.|+++|||||+|||+.|++-||+++||++.+.+||.++|||||||
T Consensus 24 p~~vR~sni~Aa~avadairTSLGPkGmDKMIq~~~gev~iTNDGaTILk~m~vlhP~akmLvelS~aQD~eaGDGTTsV 103 (534)
T KOG0358|consen 24 PEQVRFSNIQAARAVADAIRTSLGPKGMDKMIQTGKGEVIITNDGATILKQMNVLHPAAKMLVELSAAQDSEAGDGTTSV 103 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccchhhHhhcCCCcEEEecChHHHHHHHhhhChHHHHHHHhhhhccccccCCceEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc-cCcccchHH
Q 008377 104 ISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCP 182 (568)
Q Consensus 104 vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~-~~~~~~ls~ 182 (568)
|+|+++||+.+.+|+++|+||+.|.+.|+.|.+.++++|++++.| ++..|++.|.+-+.|+|+||+ +.++..+++
T Consensus 104 VilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~----velsdre~Li~~atTsLnSKvvSq~s~llap 179 (534)
T KOG0358|consen 104 VILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVP----VELSDRESLIKSATTSLNSKVVSQYSSLLAP 179 (534)
T ss_pred EEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCC----cccCcHHHHHHHHHhHhhHHHHHhhccccch
Confidence 999999999999999999999999999999999999999999987 367899999999999999996 678999999
Q ss_pred HHHHHHHHhcC-CCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccceE
Q 008377 183 LIADACIQVCP-KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTV 259 (568)
Q Consensus 183 lv~~a~~~~~~-~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~i 259 (568)
+.++|+.++.. .+..+.|+.+|+|+|..||.++|+++++|++|++... ..|++++++||.++.|.+.++|+++..++
T Consensus 180 mAVdAV~kv~dp~~~~nvdlkdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~i 259 (534)
T KOG0358|consen 180 MAVDAVLKVIDPENATNVDLKDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQI 259 (534)
T ss_pred HHHHHHHhccCcccccccchhhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcccce
Confidence 99999999854 4556789999999999999999999999999997663 36899999999999999999999999999
Q ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----cHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCee
Q 008377 260 LIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (568)
Q Consensus 260 ~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~i 334 (568)
.++++.|++.++++|++|+.+++++|++.|+||+++|++| +|.+++||++.+|+|++.+.++|+|.+|+.+|++|
T Consensus 260 iv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~c~P 339 (534)
T KOG0358|consen 260 IVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLGCKP 339 (534)
T ss_pred EecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcCCee
Confidence 9999999999999999999999999999999999999987 88999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCcceeEEEEEEE-cCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccC
Q 008377 335 MLKLCQPNPDDLGYVDSVSVEEI-GGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPG 413 (568)
Q Consensus 335 i~~~~~l~~~~lG~~~~v~~~~i-g~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpG 413 (568)
+.+++.++++.+|+++.+++... |+.+++.+.++.+.+..+||++||++...++|.+|++|||||++|+.++.+.++||
T Consensus 340 ia~id~f~~d~Lg~adlveE~~~~G~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~G 419 (534)
T KOG0358|consen 340 IADIDHFTADKLGSADLVEETDSSGEGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAG 419 (534)
T ss_pred cchhhhcChhhcCcchhhhhcccCCCccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecC
Confidence 99999999999999999999854 45599999998866889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccc
Q 008377 414 AAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADIS 493 (568)
Q Consensus 414 GG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~ 493 (568)
||+.|+.+|..|..+++...|.++|++++||+|||.||.||++|||++|++++++||++|.+|+.+.||++..|.+.|+.
T Consensus 420 GGapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~ 499 (534)
T KOG0358|consen 420 GGAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNIL 499 (534)
T ss_pred CCCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 494 TMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 494 ~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
+..|+.|+.|-.++++.|+|++.+||+||+++..
T Consensus 500 ee~VvQPllVs~SaitlA~Etvr~ILKIDDIv~a 533 (534)
T KOG0358|consen 500 EENVVQPLLVSISAITLATETVRSILKIDDIVNA 533 (534)
T ss_pred HHhcccceeeeHHHHHHHHHHHHHHhhhhhhccc
Confidence 9999999999999999999999999999999864
No 20
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.9e-98 Score=810.97 Aligned_cols=466 Identities=60% Similarity=0.970 Sum_probs=442.7
Q ss_pred cChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchh
Q 008377 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (568)
Q Consensus 22 ~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (568)
.+.++++..|+.||..|++++++||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|++++|||||
T Consensus 4 ~~~~~~~~~ni~a~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~~~~~~GDGTT 83 (472)
T cd03341 4 SGLEEAVLRNIEACKELSQITRTSYGPNGMNKMVINHLEKLFVTSDAATILRELEVQHPAAKLLVMASQMQEEEIGDGTN 83 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHhcCcCCCCCceEEEcCCCCEEEeCcHHHHHHhccccCHHHHHHHHHHHHHhhhhCCChh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccchH
Q 008377 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (568)
Q Consensus 102 t~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (568)
|+++|+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+.+. +..+.+.+.++++|+++||+.++.++|+
T Consensus 84 t~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~--~~~~~~~l~~i~~t~l~sk~~~~~~~l~ 161 (472)
T cd03341 84 LVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIE--DLRNKEEVSKALKTAIASKQYGNEDFLS 161 (472)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccC--CccCHHHHHHHHHHHhcccccchHHHHH
Confidence 99999999999999999999999999999999999999999999876332 4457888999999999999877889999
Q ss_pred HHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCceEEEEeeccccccccccceEEe
Q 008377 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (568)
Q Consensus 182 ~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i 261 (568)
+++++|+.++++++...|++++|+|++++||+.+||++++|++|++.+.++++.++||||++++++|++
T Consensus 162 ~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~~~~~~~~n~~Ili~~~~Le~----------- 230 (472)
T cd03341 162 PLVAEACISVLPENIGNFNVDNIRVVKILGGSLEDSKVVRGMVFKREPEGSVKRVKKAKVAVFSCPFDI----------- 230 (472)
T ss_pred HHHHHHHHHHhhccCCcCChhHeEEEEecCCCcccceEEeeEEEccccCCCceeccCCcEEEEeccccC-----------
Confidence 999999999987533368999999999999999999999999999888778889999999999999875
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCC
Q 008377 262 HNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQP 341 (568)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l 341 (568)
|++||+++++|+|.+++||+++||++++++++++|+|||++|||+++++++++
T Consensus 231 ---------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l 283 (472)
T cd03341 231 ---------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAP 283 (472)
T ss_pred ---------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccC
Confidence 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHH
Q 008377 342 NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIEL 421 (568)
Q Consensus 342 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~l 421 (568)
+++++|+|+.|++.++|+++|++|++++..++.+||+|||+|+.+++|.||+++||++++++++++|++|||||++|+++
T Consensus 284 ~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~l 363 (472)
T cd03341 284 TPEEIGYCDSVYVEEIGDTKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIEL 363 (472)
T ss_pred CHhHCCCceEEEEEEECCeeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHH
Confidence 99999999999999999999999999863378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCC--cccccccCCccc
Q 008377 422 ARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG--VCADISTMNVWD 499 (568)
Q Consensus 422 s~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~--~~~d~~~~gi~d 499 (568)
+++|++++...++.+++++++|++||+.||++|++|||+|+.+++.+|+..|.+++.++|+|+.+| ++.||++.||||
T Consensus 364 s~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~d 443 (472)
T cd03341 364 AKKLKEYGEKTPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFD 443 (472)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhcccee
Confidence 999999988888999999999999999999999999999999999999999987777899999999 999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 500 LYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 500 p~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
|+.||+++|+.|+|+|++|||||++|..
T Consensus 444 p~~vk~~~l~~A~e~a~~iL~id~ii~~ 471 (472)
T cd03341 444 HLATKKWAIKLATEAAVTVLRVDQIIMA 471 (472)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 9999999999999999999999999864
No 21
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.9e-97 Score=806.21 Aligned_cols=467 Identities=29% Similarity=0.540 Sum_probs=438.2
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..++ ++++..|+.||..++++++|||||+|++|||+++.|+++|||||+|||++|+++||+++|+++++++|
T Consensus 4 ~~~~~~~~~~~-~~~~~~ni~a~~~l~~~~~tslGP~G~~kmi~~~~g~~~iTnDG~tIlk~l~~~hP~a~ll~~~a~~q 82 (480)
T cd03337 4 VLNQNTKRESG-RKAQLGNIQAAKTVADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQ 82 (480)
T ss_pred eccCCCccccH-HHHHHHHHHHHHHHHHHHhccCCCCcCceEeEcCCCCEEEeccHHHHHHhccccChHHHHHHHHHHhH
Confidence 34666666556 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||+++|+++||+++.+|+++|+||+.|++||+.|++.++++|++++++ +|..|.+.|.++++|+++||
T Consensus 83 ~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~----~~~~~~~~l~~i~~t~l~sK 158 (480)
T cd03337 83 DEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIP----VDVNDRAQMLKIIKSCIGTK 158 (480)
T ss_pred HHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccc----cccCCHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999875 25568899999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCC-CC--ccccc-ceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEe
Q 008377 173 QF-GQEEILCPLIADACIQVCPKN-PA--NFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~-~~--~~~l~-~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~ 245 (568)
+. .+.++|++++++|+..++++. .. .+|++ +|+|++++||+++||++++|++|++++. +||++++||||++++
T Consensus 159 ~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~ 238 (480)
T cd03337 159 FVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLD 238 (480)
T ss_pred cchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEe
Confidence 74 568899999999999998642 11 36665 4999999999999999999999999874 589999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++|++ ||+++++|+|.+++||.++||++++++++++|+|
T Consensus 239 ~~Le~-----------------------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~r 277 (480)
T cd03337 239 CPLEY-----------------------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNR 277 (480)
T ss_pred cCcce-----------------------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHH
Confidence 99875 9999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcc-eeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~ 404 (568)
||++|||++++++++++++.+|+ |+.++++++++++|++|++|+. ++.+||+|||+|+.+++|.||+++||+++++++
T Consensus 278 Ia~~tGa~ii~~~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~-~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~ 356 (480)
T cd03337 278 IARACGATIVNRPEELTESDVGTGAGLFEVKKIGDEYFTFITECKD-PKACTILLRGASKDVLNEVERNLQDAMAVARNI 356 (480)
T ss_pred HHHHHCCEEecchhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCC-CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6777778888899999999974 899999999999999999999999999999999
Q ss_pred HhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCceeEe
Q 008377 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGID 483 (568)
Q Consensus 405 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~-~~~~Gid 483 (568)
++++++|||||++|+++|++|++++.+.++++|+++++||+||+.||++|++|||+|+.+++.+|++.|.++ +.++|+|
T Consensus 357 ~~~~~~vpGGGa~E~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 436 (480)
T cd03337 357 ILNPKLVPGGGATEMAVSHALSEKAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGID 436 (480)
T ss_pred hcCCCEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECee
Confidence 999999999999999999999999988999999999999999999999999999999999999999999887 5789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhh
Q 008377 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLK 526 (568)
Q Consensus 484 ~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (568)
+.+|++.||++.|||||+.+|+++|+.|+|+|++|||||++|.
T Consensus 437 ~~~g~i~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~id~ii~ 479 (480)
T cd03337 437 GETGDIVDMKELGIWDPLAVKAQTYKTAIEAACMLLRIDDIVS 479 (480)
T ss_pred ccCCCcccchhccCeEcHHHHHHHHHHHHHHHHHHhhhhheec
Confidence 9999999999999999999999999999999999999999874
No 22
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-96 Score=746.83 Aligned_cols=521 Identities=53% Similarity=0.839 Sum_probs=501.0
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh
Q 008377 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP 80 (568)
|++.+|+.+...++++|.++.+|.+++...|+.||+++++++||+|||+||+||++|+.|++++|||.+||+++|+++||
T Consensus 1 M~~~vp~a~~~q~~k~g~r~~~~~e~~v~~ni~a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HP 80 (537)
T KOG0362|consen 1 MALTVPKAGIPQMLKEGARSPSGEEEAVIRNIAAVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHP 80 (537)
T ss_pred CCccCCCCchhhHHhccccCcccchHHHHHHHHHHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 008377 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (568)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~ 160 (568)
+|++|+++++.|+++.||||++||+|+++||++|++||+.|++|.+|++||+.|.+.+++.|+++.+.... |..|.+
T Consensus 81 aakllv~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~--d~~d~~- 157 (537)
T KOG0362|consen 81 AAKLLVEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIG--DLEDKE- 157 (537)
T ss_pred HHHHHHHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcc--cccChH-
Confidence 99999999999999999999999999999999999999999999999999999999999999998776443 555555
Q ss_pred HHHHHHHhhhccccCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCce
Q 008377 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAK 240 (568)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~k 240 (568)
+.+++++.+|-..+.+++++++++|++.+.+.. .|+.|+|+++|+.||++++|+++.|++|++.+++.++.-+.+|
T Consensus 158 --~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~--~FnvdnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG~v~~ak~ar 233 (537)
T KOG0362|consen 158 --WALRSVIMSKQYGNEDFLTKLVAKACVSILPLM--SFNVDNIRVCKILGGGLEDSCVVCGMVFKRDPEGEVKSAKDAR 233 (537)
T ss_pred --HHHHHHHHHhhcchHHHHHHHHHHHHHhhcccc--cccccceEEEEEecCCcccceeeEEEEeccccCCcccccccce
Confidence 889999999988889999999999999999873 3999999999999999999999999999999998888889999
Q ss_pred EEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCCh
Q 008377 241 VAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK 320 (568)
Q Consensus 241 Illl~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~ 320 (568)
|++++||+++..+++++++.+++++++..|.+.|+..++..++.|...|++||++.+.+++.+++||++++|++++..++
T Consensus 234 vAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk 313 (537)
T KOG0362|consen 234 VAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSK 313 (537)
T ss_pred eEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHH
Q 008377 321 FELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNT 400 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~ 400 (568)
.||.|+|+..||+++..+..+.+..+|+|++|+.+++|+.+++.|++....+++.|++|||++...+|+.||+++|++++
T Consensus 314 ~eLrrlcrtvGA~~l~rl~~P~~~~lG~~d~V~~~EiG~~~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~t 393 (537)
T KOG0362|consen 314 FDLRRLCRTVGATALPRLFPPAPEELGYCDSVSTQEIGDTLVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNT 393 (537)
T ss_pred hhHHHHHHHcCCccchhccCCCCccccccceeeeeecCCceEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999988765578999999999999999999999999999
Q ss_pred HHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCce
Q 008377 401 YKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKV 480 (568)
Q Consensus 401 l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~ 480 (568)
.+..+++++++||+|++|++|+..|.+++..++|.+|++++.||+||+.+|++|++|+|++..+++++|++.|. +..+.
T Consensus 394 yK~l~~d~rLlpGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~-~g~~~ 472 (537)
T KOG0362|consen 394 YKALCSDSRLLPGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQ-GGKNL 472 (537)
T ss_pred hhhhccCCccccCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhc-CCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 44568
Q ss_pred eEeccCC-cccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 481 GIDLENG-VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 481 Gid~~~~-~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
|+|+..+ ...|+.+.||||-+..|.++++.|+|+|.++|++|+||++++
T Consensus 473 g~di~~e~~~~d~~~~~i~D~~~~K~~a~k~at~aa~tvl~vDqiimak~ 522 (537)
T KOG0362|consen 473 GMDIEAEGGTIDVREEGIWDTLAVKAQAIKLATEAALTVLTVDQIIMAKK 522 (537)
T ss_pred eeeeeccccccChhhhchHHHHHHHHHHHHHHHhhhheeeehhheeEecc
Confidence 9998877 488999999999999999999999999999999999999987
No 23
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-97 Score=722.48 Aligned_cols=517 Identities=27% Similarity=0.438 Sum_probs=488.4
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcC--CCCeEEeccHHHHHhhccccChHHHHHHHH
Q 008377 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINH--LDKLFVTNDAATIVNELEVQHPAAKLLVLA 88 (568)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~--~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~ 88 (568)
..+++++..+++|. .++.+.+.++..+.+++||||||+||+||++.. .|.+.+||||+|||+++.+++|+||+|++.
T Consensus 4 ~~i~~~~~~eErge-~ArlssfvGaiaigDlvKsTLGPKGMdKiL~s~~~~~~v~VTNDGAtILksi~vDnpaAkvLv~~ 82 (527)
T KOG0363|consen 4 VQIFKDGATEERGE-NARLSSFVGAIAIGDLVKSTLGPKGMDKILQSTGRAGTVMVTNDGATILKSIGVDNPAAKVLVDI 82 (527)
T ss_pred hhhhcccchhhhhh-hHHHHHHHHHHHHHHHHHhccCcchHHHHHhccCCCCceEEecchHHHHHhcCCCCchhhheecc
Confidence 46789999999994 899999999999999999999999999999964 467999999999999999999999999999
Q ss_pred HHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHh
Q 008377 89 GKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (568)
Q Consensus 89 ~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~ 168 (568)
++.||+++|||||||++|+++||++|.+|+.+.+||+.|+.|||+|.+.+.+.|.+.++.... -+.+-+++|.++++|.
T Consensus 83 S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~-~~~kfr~DLl~iarTT 161 (527)
T KOG0363|consen 83 SKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSS-DKEKFREDLLKIARTT 161 (527)
T ss_pred ccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988765221 0112278999999999
Q ss_pred hhcccc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC-CCCcccccCceEEEEee
Q 008377 169 VASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA-VGSIKNMEKAKVAVFAG 246 (568)
Q Consensus 169 l~sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~-~~~~~~i~n~kIlll~~ 246 (568)
|+||+. ...+||++++++|+.++..+ -+++.|+|+|..||+++||++-+|+++++.+ .++|++++|+||++-|.
T Consensus 162 L~SKiLsq~kehFaelavdAV~rLkGs----~nL~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv~qpkriena~iLIANT 237 (527)
T KOG0363|consen 162 LSSKILSQDKEHFAELAVDAVLRLKGS----TNLEAIQIIKKLGGKLEDSFLDEGFLLDKKIGVNQPKRIENAKILIANT 237 (527)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCC----CCccceeeehhcCCccccccccccceeccccCCCCcccccccceEEecC
Confidence 999974 56899999999999999654 3578999999999999999999999999887 57899999999999999
Q ss_pred ccccccccc-cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 247 GVDTSATET-KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 247 ~Le~~~~~~-~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
+++.+|.+. .+.+.+++...+..+...|+..++.++++|.+.|+|+.+...=|.++-.|+|...||++++..+.+-+||
T Consensus 238 ~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiER 317 (527)
T KOG0363|consen 238 PMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIER 317 (527)
T ss_pred CCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHH
Confidence 999999886 4689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
++.+||+.++++|++++..++|+|+.|++.-+|++++++|++++. +..|||+|||+|++++||.+|++|||||++...+
T Consensus 318 LalvtGGeI~STFd~p~~~klG~C~~IeeimiGed~li~FSGv~~-GeActIVlrGat~q~LDEaeRslHDALcVLaqtv 396 (527)
T KOG0363|consen 318 LALVTGGEIVSTFDNPELVKLGECDLIEEIMIGEDKLIKFSGVKL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTV 396 (527)
T ss_pred HhhcccceeeeccCCcchhccccchhhHHHhcCccceeeeccccc-ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999984 8899999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEecc
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~ 485 (568)
++.+++.||||.||.+|.++.+++...++++..++++|++||..+|.+|+.|+|+|+.+++++||+.|.+|...+|+|+.
T Consensus 397 ~esrvv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~ 476 (527)
T KOG0363|consen 397 KESRVVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVR 476 (527)
T ss_pred ccceeeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccCCcc
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINRDC 534 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~~~~ 534 (568)
+|++.||.+.||+|++.+|.+.+.+|.|++.+|||+|.||...|+.+..
T Consensus 477 ~G~i~dm~~~Gi~es~~vK~~vv~sasEaae~ilrvD~Iik~aPR~r~~ 525 (527)
T KOG0363|consen 477 NGEIGDMRELGIVESLKVKQAVVSSASEAAEMILRVDNIIKAAPRERER 525 (527)
T ss_pred cCchhhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhhhhhhhcCCccccc
Confidence 9999999999999999999999999999999999999999999876643
No 24
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=9.9e-94 Score=777.09 Aligned_cols=456 Identities=37% Similarity=0.610 Sum_probs=436.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHH
Q 008377 24 LDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLT 103 (568)
Q Consensus 24 ~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~ 103 (568)
.++++..|++||..++++++|||||+|++|||+++.|+++|||||+||+++|+++||+++++++++++|++++||||||+
T Consensus 6 ~~~~~~~~~~~~~~l~~~v~tslGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~hp~a~ll~~~~~~~~~~~GDGTtt~ 85 (464)
T cd00309 6 GEEARLSNINAAKALADAVKTTLGPKGMDKMLVDSLGDPTITNDGATILKEIEVEHPAAKLLVEVAKSQDDEVGDGTTTV 85 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCcEEEEcCCCCeEEEccHHHHHHhccCcCHHHHHHHHHHHHHHhHhCCchhHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc-cCcccchHH
Q 008377 104 ISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCP 182 (568)
Q Consensus 104 vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~-~~~~~~ls~ 182 (568)
++|+++|++++.+++++|+||..|++||+.|++.++++|++++++. +..+.+.|.++++|+++||+ +.+++++++
T Consensus 86 viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~----~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~ 161 (464)
T cd00309 86 VVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPI----DVEDREELLKVATTSLNSKLVSGGDDFLGE 161 (464)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCcc----CCCCHHHHHHHhHhcccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999998862 45688999999999999997 567899999
Q ss_pred HHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccceEE
Q 008377 183 LIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (568)
Q Consensus 183 lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~i~ 260 (568)
++++|+.+++++.. .++.++|+|++++||++.||++++|++|++++. .||+.++||||++++++|++
T Consensus 162 l~~~Ai~~v~~~~~-~~~~~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~---------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG-DVDLGVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY---------- 230 (464)
T ss_pred HHHHHHHHhccccC-ccccceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce----------
Confidence 99999999987543 577889999999999999999999999999884 46889999999999999885
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCC
Q 008377 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQ 340 (568)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~ 340 (568)
||+++++|++.++++|.++||++++++++++|+|||++|||++++++++
T Consensus 231 -------------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~ 279 (464)
T cd00309 231 -------------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLED 279 (464)
T ss_pred -------------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEeccccc
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHH
Q 008377 341 PNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIE 420 (568)
Q Consensus 341 l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ 420 (568)
++++.+|+|+.|++.++|+++|++|++++. ++.+||+|||+|+.+++|+||+++||+++++++++++++|||||++|++
T Consensus 280 ~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~-~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ 358 (464)
T cd00309 280 LTPEDLGTAGLVEETKIGDEKYTFIEGCKG-GKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIE 358 (464)
T ss_pred CCcccCccccEEEEEEEcCeeEEEEEecCC-CCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHH
Confidence 999999999999999999999999999874 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCcccc
Q 008377 421 LARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDL 500 (568)
Q Consensus 421 ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp 500 (568)
+|++|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|..+..+.|+|..+|++.||.+.|||||
T Consensus 359 ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp 438 (464)
T cd00309 359 LSKALEELAKTLPGKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDP 438 (464)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeec
Confidence 99999999988899999999999999999999999999999999999999999877778999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHhh
Q 008377 501 YVTKFFALKYAADAACTVLRVDQVLK 526 (568)
Q Consensus 501 ~~vk~~~l~~A~e~a~~iL~iD~ii~ 526 (568)
+.+|+++|+.|+|+|++|||||++|.
T Consensus 439 ~~vk~~~l~~A~e~a~~iL~id~ii~ 464 (464)
T cd00309 439 LKVKRQALKSATEAASLILTIDDIIV 464 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 99999999999999999999999984
No 25
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-92 Score=762.63 Aligned_cols=498 Identities=31% Similarity=0.465 Sum_probs=467.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCch
Q 008377 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (568)
..+ .+++..|+.|+..+++++|+||||+||+|||+++.|+++|||||+||+++|+++||.|+|+++++++|++++||||
T Consensus 7 ~~~-~~a~~~~~~~~~~la~~vkttLGPkG~~k~l~~~~g~~~iTnDG~tIlkeielehp~akll~eva~~qd~e~GDGT 85 (524)
T COG0459 7 KFG-EDARRSNIRAARALADAVKTTLGPKGRNKMLVDSGGDITITNDGVTILKEIELEHPGAKLLVEVAKKQDDEAGDGT 85 (524)
T ss_pred ccc-HHHHHHHHHHHHHHHHHHHhccCCCcCceEEecCCCCEEEecCcceehhhhhccCchhHHHHHHHHHHHHHhcCch
Confidence 345 4899999999999999999999999999999999779999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++.+.+. +..+.+. +++.|++++|+.+.++++
T Consensus 86 TtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v----~~~~~~~--~~~~t~v~sk~~~~~~~i 159 (524)
T COG0459 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPV----SDSEEEL--KIAITSVASKSANSDEEI 159 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccC----Ccchhhh--hhhhheeeeeeccChHHH
Confidence 9999999999999999999999999999999999999999999999863 2222222 889999999987666999
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecC---CCCc-ccccCceEEEEeecccccccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA---VGSI-KNMEKAKVAVFAGGVDTSATETK 256 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~---~~~~-~~i~n~kIlll~~~Le~~~~~~~ 256 (568)
++++++|+.+++.+.. |++.|.+++..||+.+|+++++|++|++++ -.|| +.++||+|++++++|+..+++.+
T Consensus 160 ~~lv~~Av~~v~~~~~---d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~ 236 (524)
T COG0459 160 GELVVEAVEKVGKEQS---DLDGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELP 236 (524)
T ss_pred HHHHHHHHHHhccccc---ccCCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCc
Confidence 9999999999987542 788999999999999999999999999954 3578 89999999999999999999999
Q ss_pred ceEEecCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEecCCccHHHHHHHHhCCeEEEEeCChhHH-HHHHHHhCCe
Q 008377 257 GTVLIHNAEQLENYAKTEE-AKVEGLIKAVAESGAE-VIVSGAAVGEMALHFCERYKLMVLKISSKFEL-RRFCRTTGAV 333 (568)
Q Consensus 257 ~~i~i~~~~~l~~~~~~E~-~~l~~~v~~l~~~~v~-vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L-e~Ia~~tGa~ 333 (568)
.++.+++.++++.|.+.|+ +.+..+++++.+.++| |++++++|+|.+++||.+.+|++++++.++|+ ++|++++||+
T Consensus 237 ~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~ 316 (524)
T COG0459 237 LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAK 316 (524)
T ss_pred ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCce
Confidence 9999999999999999999 9999999999999999 99999999999999999999999999999999 8999999999
Q ss_pred ecccCCCCCCCCCcc--eeEEEEEEEcCeEEEEEEecCC-CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCc
Q 008377 334 AMLKLCQPNPDDLGY--VDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (568)
Q Consensus 334 ii~~~~~l~~~~lG~--~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~v 410 (568)
+++.++++++..+|. |..|++.+++++++.+|++++. .++.+||++||+|+.+++|.+|+++|||+++++++++|++
T Consensus 317 ~v~~~~d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~i 396 (524)
T COG0459 317 IVSVLKDLTTIVLGEGAAGLVEETKTGDYDMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKI 396 (524)
T ss_pred EEeecccCceeecCccccceEEEeeccchhhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence 999999999999999 9999999999999999999863 2789999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcc
Q 008377 411 VPGAAATEIELARRLKEFSFKETG-LDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVC 489 (568)
Q Consensus 411 vpGGG~~E~~ls~~L~~~~~~~~~-~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~ 489 (568)
|||||++|++++.+|++++.+.++ ++|+++++|++||+.||++|++|||+|+.+++.+|++.|. ..++|+|..+|++
T Consensus 397 V~GGGa~e~~~a~~L~~~~~~~~g~~e~~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~--~~~~G~d~~~~~~ 474 (524)
T COG0459 397 VPGGGAAEIEAALRLREYAMTVEGGDEQLGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHA--TTNYGIDAFTGEY 474 (524)
T ss_pred EeCCCHHHHHHHHHHHhhhccCCchHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhccc--CCccceeccCCcc
Confidence 999999999999999998545555 8999999999999999999999999999999999999875 3458999999998
Q ss_pred -cccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCcc
Q 008377 490 -ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLII 530 (568)
Q Consensus 490 -~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~ 530 (568)
.||.+.|||||+.||+++|+.|+|+|.+|||+|++|..+|.
T Consensus 475 ~~dm~~~GI~dP~~v~~~al~~A~e~a~llL~~d~iI~~~~~ 516 (524)
T COG0459 475 EDDMIEAGIIDPLKVKRSALKNAAEAAGLLLTIDDIIAAKPE 516 (524)
T ss_pred ccchHhccCcChHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 77999999999999999999999999999999999999874
No 26
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=6.2e-92 Score=769.34 Aligned_cols=480 Identities=33% Similarity=0.563 Sum_probs=454.3
Q ss_pred HHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHH
Q 008377 38 LSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEEL 117 (568)
Q Consensus 38 l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~l 117 (568)
|++++++||||+|++|||+++.|++++||||+||+++|+++||+++++++++++|++++||||||+++|+++|++++.++
T Consensus 1 l~~~v~sslGP~G~~kli~~~~g~~~iTndg~tIl~~l~~~~P~~~ll~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~l 80 (485)
T PF00118_consen 1 LADIVKSSLGPKGRDKLIVNDSGKIIITNDGATILKSLKINHPIAKLLVEASKSQDEEVGDGTTSVVLLACELLRNALKL 80 (485)
T ss_dssp HHHHHGCCSSTTS-EEEEEESSSSEEEESSHHHHHHHSTBSSHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcccCcCCCCCeEEEEcCCCCeEEEechhHHHHHhhhccchhhhHHHhHHHHHhhhccccceeeecccchhhhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc-cCcccchHHHHHHHHHHhcCCCC
Q 008377 118 IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEILCPLIADACIQVCPKNP 196 (568)
Q Consensus 118 i~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~ 196 (568)
+++|+||..|++||+.|++.+++.|++++++. +..+ +.|.++++|++++|+ ..+.++|++++++|+ +..+.+
T Consensus 81 i~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~----~~~~-~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~-~~~~~~- 153 (485)
T PF00118_consen 81 IKKGIHPQEIIRGLQEALKIILEYLEKISIPI----NNDD-ESLLNIAKTSLNSKISSSWSDHLSKLIVDAI-KSIKSN- 153 (485)
T ss_dssp HHTTS-HHHHHHHHHHHHHHHHHHHHHHSEES----TSTS-HHHHHHHHHHHTTSCGGGCHHHHHHHHHHHH-HHHTTT-
T ss_pred hhccccccchhhhhhhhhhhhhhhhhhhhccc----cccc-hhhhhhhcccccccccccchhhhhhhHHHHH-Hhhccc-
Confidence 99999999999999999999999999998762 2222 899999999999996 467899999999999 443322
Q ss_pred CcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHH
Q 008377 197 ANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTE 274 (568)
Q Consensus 197 ~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E 274 (568)
+++++++++++.||+++||++++|+++++++. +||+++++|||++++++|+++++ .+.++.+++.+++..+.++|
T Consensus 154 --~~~~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~-~~~~~~~~~~~~~~~~~~~e 230 (485)
T PF00118_consen 154 --FDLDNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKS-FKSEIRITSPEQLDELSKQE 230 (485)
T ss_dssp --HHGGGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCH-STEEEEESSTHHHHHHHHHH
T ss_pred --ccccchhhhhhccccccccccccceeeeccccccccccccccceEEeeecccccccc-cccccchhhHHHHHHHHhhh
Confidence 78889999999999999999999999998874 47899999999999999999999 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEE
Q 008377 275 EAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSV 354 (568)
Q Consensus 275 ~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~ 354 (568)
+++++++++++.+.|++||+++++||+.++++|.++||+++++++.++|++|+++|||++++++++++++.+|+|+.+++
T Consensus 231 ~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~~l~~~~lG~~~~v~~ 310 (485)
T PF00118_consen 231 KKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLDDLSDEDLGFCKSVEE 310 (485)
T ss_dssp HHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCGGSTGGGSEEEEEEEE
T ss_pred hhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccccccchhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred EEEcCeEEEEEE--ecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccc
Q 008377 355 EEIGGARVTIVR--NEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKE 432 (568)
Q Consensus 355 ~~ig~~~~~~~~--~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~ 432 (568)
..+++++|++|+ ++. .++.+||+|||+++.+++|.+++++||+++++++++++++|||||++|++|+++|++++.+.
T Consensus 311 ~~i~~~~~~~~~~~~~~-~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vvpGGG~~e~~l~~~L~~~~~~~ 389 (485)
T PF00118_consen 311 REIGNKKYIFIEGIGCL-SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVVPGGGATELHLSKALRKYAKSL 389 (485)
T ss_dssp EEETSSEEEEEEEHSES-SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEEETTTHHHHHHHHHHHHHHHCS
T ss_pred ccccccccccccccccc-ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCceeecCcchhhhhhhhHHHhhhcc
Confidence 999999999998 465 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHH
Q 008377 433 TGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAA 512 (568)
Q Consensus 433 ~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~ 512 (568)
++.+++++++||+||+.||++|++|||+|+.+++++|++.|+++ .++|+|+.+|++.||.+.|||||+.+|+++|+.|+
T Consensus 390 ~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~-~~~g~d~~~~~i~~~~~~gi~dp~~~k~~~l~~A~ 468 (485)
T PF00118_consen 390 SGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNG-NNYGIDLDTGEIVDMKEAGILDPLLVKISALKSAV 468 (485)
T ss_dssp SSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHST-TTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHH
T ss_pred cCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccc-cccCcCccCCceeccccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998765 48999999999999999999999999999999999
Q ss_pred HHHHHHhchhHHhhcCc
Q 008377 513 DAACTVLRVDQVLKDLI 529 (568)
Q Consensus 513 e~a~~iL~iD~ii~~~~ 529 (568)
|+|++|||||++|.++|
T Consensus 469 ~~a~~iL~id~iI~~~~ 485 (485)
T PF00118_consen 469 EIASLILRIDEIIMAKP 485 (485)
T ss_dssp HHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999998865
No 27
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.6e-89 Score=749.43 Aligned_cols=453 Identities=23% Similarity=0.317 Sum_probs=415.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
++++..|++||+.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +|+++++++++|++++||||
T Consensus 9 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDGaTIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 88 (542)
T PRK12849 9 EEARRALERGVNKLADAVKVTLGPKGRNVVIDKSFGAPTITKDGVSIAKEIELEDPFENLGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCccHhHHHHHHHHHHHhcCCccCCCc
Confidence 58999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++ .++.+.|.++++|+.+ +++++
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARP------VSGSEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcC-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 2367889999988753 57899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCccc-ceeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~d-S~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+..+++++ .|++ . .|++.+| +++++|++|++++. .+++.++||+|+++|+.
T Consensus 158 ~~lv~~Av~~v~~~g--~i~i-----~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 225 (542)
T PRK12849 158 GELIAEAMEKVGKDG--VITV-----E--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKK--- 225 (542)
T ss_pred HHHHHHHHHHhccCC--cEeE-----E--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCC---
Confidence 999999999997543 2443 2 6888876 79999999998763 35888999999999996
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhC------CeEEEEeCCh----
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISSK---- 320 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~------~I~vv~~v~~---- 320 (568)
+++++++.+ +++++.+.+++|||++++|+|.++++|.++ +|+++++++.
T Consensus 226 ----------i~~~~~~~~-----------~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r 284 (542)
T PRK12849 226 ----------ISSLQDLLP-----------LLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRR 284 (542)
T ss_pred ----------cCCHHHHHH-----------HHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchh
Confidence 456666665 678999999999999999999999999888 9999999984
Q ss_pred -hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC-----------------------
Q 008377 321 -FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (568)
Q Consensus 321 -~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (568)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ +++++++++++.
T Consensus 285 ~~~l~~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~ 361 (542)
T PRK12849 285 KAMLEDIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITK---DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDR 361 (542)
T ss_pred HhHHHHHHHHhCCEEecccccCCcccCCHHHCceeeEEEEee---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4599999999999999 68889999999999998765 888999887531
Q ss_pred -----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++ +.++++|+++
T Consensus 362 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~ls~~L~~~~-~~~g~~~~~i 439 (542)
T PRK12849 362 EKLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRAAKALDELA-GLNGDQAAGV 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHHHHHHHHhh-CCChHHHHHH
Confidence 2589999999999999999999999999999999998 99999999999999999998 8899999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++||+||+.||++|++|||+|+.+++++|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++|||
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vi~~L~~~~----~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~ 515 (542)
T PRK12849 440 EIVRRALEAPLRQIAENAGLDGSVVVAKVLELE----DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLT 515 (542)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhC----CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998875 4699999999999999999999999999999999999999999
Q ss_pred hhHHhhcCcc
Q 008377 521 VDQVLKDLII 530 (568)
Q Consensus 521 iD~ii~~~~~ 530 (568)
||++|..+|+
T Consensus 516 id~iI~~~~~ 525 (542)
T PRK12849 516 TEALVADKPE 525 (542)
T ss_pred HHHHHhcCCc
Confidence 9999998773
No 28
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.1e-89 Score=748.41 Aligned_cols=469 Identities=22% Similarity=0.301 Sum_probs=426.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++..|++||+.++++++|||||+|++|||+++.|+++|||||+|||++|+++|| .|+++++++++|++++||||
T Consensus 9 ~~a~~~~i~a~~~ia~~v~ttLGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~e~a~~qd~e~GDGT 88 (542)
T PRK00013 9 EDARRKLLRGVNKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 88 (542)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCchhhHHHHHHHHHHHhcCcccCCcc
Confidence 48999999999999999999999999999999999999999999999999999999 69999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++++ .++.+.|.+++.|+++ +++.+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~------~~~~~~l~~va~ts~~-----~~~~l 157 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKP------VEDKEEIAQVATISAN-----GDEEI 157 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHhccc-----chHHH
Confidence 999999999999999999999999999999999999999999999875 2367889999988753 57899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC---------CCcccccCceEEEEeeccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~ 251 (568)
++++++|+..+++++ .|.|.+..| ..++|++++|++|++++. .+++.++||+|+++|+.
T Consensus 158 s~lv~~Av~~v~~~g-------~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~---- 225 (542)
T PRK00013 158 GKLIAEAMEKVGKEG-------VITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKK---- 225 (542)
T ss_pred HHHHHHHHHHhCcCC-------cEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCc----
Confidence 999999999987542 277777676 778999999999998763 35788999999999996
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCC------eEEEEeCC-----h
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKISS-----K 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~------I~vv~~v~-----~ 320 (568)
+++++++.+ +++++.+.|++|||++++|++.++++|..++ |+++++++ +
T Consensus 226 ---------i~~~~~l~~-----------~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~ 285 (542)
T PRK00013 226 ---------ISNIQDLLP-----------VLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRK 285 (542)
T ss_pred ---------cCCHHHHHH-----------HHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchh
Confidence 456667664 6888999999999999999999999999886 99999997 7
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCc----------------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNS---------------------- 373 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~---------------------- 373 (568)
++|+|||.+||+++++ ++++++++++|+|+.|++.. ++|++|+++.. +.
T Consensus 286 ~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 361 (542)
T PRK00013 286 AMLEDIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTK---DNTTIVDGAGD-KEAIKARVAQIKAQIEETTSDYDR 361 (542)
T ss_pred hhHHHHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEec---CEEEEEeCCCC-HHHHHHHHHHHHHHHhhcCCHHHH
Confidence 8999999999999999 79999999999999998865 88999988753 33
Q ss_pred -------------eEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 374 -------------VSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 374 -------------~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|+++ .+.++.+|+++
T Consensus 362 ~~l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i 439 (542)
T PRK00013 362 EKLQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRAAPALEAL-KGLNGDEATGI 439 (542)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHHHHHHHHh-cCCChHHHHHH
Confidence 78999999999999999999999999999999997 9999999999999999998 67889999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++||+||+.||++|++|||+|+.+++++|++.| +.++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+
T Consensus 440 ~~~a~Al~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 516 (542)
T PRK00013 440 NIVLRALEAPLRQIAENAGLEGSVVVEKVKNGK---GKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLT 516 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887 46799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCccCCccccccCCCCCCCCCcccc
Q 008377 521 VDQVLKDLIINRDCLFTRCLNCSFSYKWLCS 551 (568)
Q Consensus 521 iD~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (568)
||++|..+|++. .. .|++ .|+||||
T Consensus 517 id~iI~~~~~~~-~~----~~~~-~~~~~~~ 541 (542)
T PRK00013 517 TEAVVADKPEKK-AA----APPM-GGGGMGG 541 (542)
T ss_pred HHHHHhcCCccc-CC----CCCC-CCCCCCC
Confidence 999999877332 22 2333 4667776
No 29
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.6e-88 Score=739.84 Aligned_cols=470 Identities=19% Similarity=0.296 Sum_probs=421.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (568)
++++..|+.||+.++++++|||||+|++|||+++.|+++|||||+|||++|+++||+ ++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~G~~~ITnDG~tIlk~i~i~hp~~~~ga~ll~~~a~~qd~e~GDGT 89 (544)
T PRK12850 10 TDARDRLLRGVNILANAVKVTLGPKGRNVVLEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVKEVASKTNDLAGDGT 89 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCCEEEECCCCCeeEeccHHHHHHHhcCCChhhhHHHHHHHHHHhhhcchhcCCc
Confidence 489999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++.+ .++.+.|.+++++++++ ++.+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~------v~~~~~l~~va~~s~~~-----~~~l 158 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKK------VTSSKEIAQVATISANG-----DESI 158 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----HHHH
Confidence 999999999999999999999999999999999999999999999875 23678899999887654 6899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC---------CCcccccCceEEEEeeccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~ 251 (568)
++++++|+..+++++ .++++.+ +..| .++++++|++|++++. .+++.++||+|+++|+.+
T Consensus 159 ~~lv~eAv~~vg~~g--~i~v~~~---~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i--- 227 (544)
T PRK12850 159 GEMIAEAMDKVGKEG--VITVEEA---KTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKI--- 227 (544)
T ss_pred HHHHHHHHHHhcccC--ceeeEEc---cccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEeccc---
Confidence 999999999997643 3554432 2333 5789999999998763 247889999999999963
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCe------EEEEe-----CCh
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I------~vv~~-----v~~ 320 (568)
++.++ +..+++++.+.|++|||++++|+|.++++|.+++| ++|++ .++
T Consensus 228 ----------~~~~~-----------i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~ 286 (544)
T PRK12850 228 ----------SNLQD-----------LLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRK 286 (544)
T ss_pred ----------CCHHH-----------HHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccH
Confidence 33333 44578899999999999999999999999999998 99998 778
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC-------------------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------- 370 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------- 370 (568)
++|+|||++|||++++ ++++++++++|+|+.|++.+ ++|++++++..
T Consensus 287 ~~le~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (544)
T PRK12850 287 AMLEDIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITK---ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDRE 363 (544)
T ss_pred HHHHHHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEe---eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999 68889999999999998876 78899988753
Q ss_pred ---------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHH
Q 008377 371 ---------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 441 (568)
Q Consensus 371 ---------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~ 441 (568)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++ .+.++.+|++++
T Consensus 364 ~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~-~~~~~~~~~~i~ 441 (544)
T PRK12850 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRARSALRGL-KGANADETAGID 441 (544)
T ss_pred HHHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHhc-cCCChHHHHHHH
Confidence 12489999999999999999999999999999999997 9999999999999999998 677889999999
Q ss_pred HHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhch
Q 008377 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (568)
Q Consensus 442 ~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~i 521 (568)
+|++||+.||++|++|||+|+.+++++|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||||
T Consensus 442 ~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~----~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 442 IVRRALEEPLRQIATNAGFEGSVVVGKVAELP----GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999998875 46899999999999999999999999999999999999999999
Q ss_pred hHHhhcCccCCccccccCCCCCCCCCccccc
Q 008377 522 DQVLKDLIINRDCLFTRCLNCSFSYKWLCSI 552 (568)
Q Consensus 522 D~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (568)
|++|..+| +++++ ++ .+||.||||.
T Consensus 518 d~iI~~~~-~~~~~----~~-~~~~~~~~~~ 542 (544)
T PRK12850 518 EAMVAEAP-KKAAA----AA-AGPGPGMGGM 542 (544)
T ss_pred HHhhccCC-CCCCC----CC-CCCCCCCCCC
Confidence 99998876 33344 33 3477788774
No 30
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=3.6e-87 Score=731.51 Aligned_cols=466 Identities=20% Similarity=0.280 Sum_probs=419.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
++++..|+++++.++++++|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 89 (541)
T PRK12851 10 VEAREKMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPTITNDGVTIAKEIELEDKFENMGAQMVREVASKTNDVAGDGT 89 (541)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCEEEECCCCCeeEecCHHHHHHHccCCCchhhHHHHHHHHHHHhhhHhhCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++ .++.+.+.+++++++ +++++|
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~------~~~~~~l~~va~~s~-----~~~~~l 158 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARP------VTTNAEIAQVATISA-----NGDAEI 158 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhc-----cChHHH
Confidence 999999999999999999999999999999999999999999999875 236778999988765 457899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC---------CCcccccCceEEEEeeccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~ 251 (568)
++++++|+..+++++ .+.+.+.. +...++++++|++|++++. .||+.++||+|+++|+++
T Consensus 159 ~~lv~~Av~~vg~~g-------~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i--- 227 (541)
T PRK12851 159 GRLVAEAMEKVGNEG-------VITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKI--- 227 (541)
T ss_pred HHHHHHHHHHhcccC-------ceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCc---
Confidence 999999999987543 23454444 5677899999999998762 378899999999999984
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCe------EEEEe-----CCh
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKI-----SSK 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I------~vv~~-----v~~ 320 (568)
++.++ +..+++.+.+.+++|||++++|++.++++|.+++| ++|++ +++
T Consensus 228 ----------~~~~~-----------i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~ 286 (541)
T PRK12851 228 ----------SNLQD-----------LLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRK 286 (541)
T ss_pred ----------CcHHH-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccH
Confidence 23333 44578899999999999999999999999999886 89997 788
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCC-----------------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGN----------------------- 372 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~----------------------- 372 (568)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++|+++.+++. +
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~-~~~i~~ri~~l~~~~~~~~~~~~~ 362 (541)
T PRK12851 287 AMLEDIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEK---ENTTIIDGAGS-KTEIEGRVAQIRAQIEETTSDYDR 362 (541)
T ss_pred hHHHHHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEc---ceEEEEcCCCC-HHHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999 68888888999999998877 88899988753 2
Q ss_pred ------------ceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 373 ------------SVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 373 ------------~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
..+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++.. ++.+|+++
T Consensus 363 ~~l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~~~~~ 440 (541)
T PRK12851 363 EKLQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRAVKALDKLETA-NGDQRTGV 440 (541)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHHHHHHHHHhcC-CcHHHHHH
Confidence 388999999999999999999999999999999998 9999999999999999998876 88999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++.| .++|+|+.+|++.||++.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~----~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~ 516 (541)
T PRK12851 441 EIVRRALEAPVRQIAENAGAEGSVVVGKLREKP----GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLT 516 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhC----CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998875 3789999999999999999999999999999999999999999
Q ss_pred hhHHhhcCccCCccccccCCCCCCCCCcc
Q 008377 521 VDQVLKDLIINRDCLFTRCLNCSFSYKWL 549 (568)
Q Consensus 521 iD~ii~~~~~~~~~~~~~~~~~~~~~~~~ 549 (568)
||++|..+| +++++ +..+||+||
T Consensus 517 id~iI~~~~-~~~~~-----~~~~~~~~~ 539 (541)
T PRK12851 517 TEAMVAEKP-KKEPA-----PPAPPGGGM 539 (541)
T ss_pred HHHhhhcCC-CCCCC-----CCCCCCccc
Confidence 999999876 33222 334467666
No 31
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.3e-87 Score=733.09 Aligned_cols=469 Identities=19% Similarity=0.269 Sum_probs=420.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccc----cChHHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEV----QHPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~----~hP~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++..|++|+..++++++|||||+||+|||+++.|+++|||||+|||++|++ +||.|+|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~iTnDG~TIlk~i~~~~~~~~p~akll~e~a~~q~~e~GDGT 89 (545)
T PRK12852 10 GDARDRMLRGVDILANAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKTNDLAGDGT 89 (545)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCeeEeccHHHHHHHccCCCcccChHHHHHHHHHhhcCceecCCc
Confidence 48999999999999999999999999999999999999999999999999999 59999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+|+++|+||..|++||+.|++.++++|++++++. .+.+++.++++++.++ ++.+
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v------~~~~~l~~va~~s~~~-----~~~l 158 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPV------ASSAEIAQVGTISANG-----DAAI 158 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccC------CCHHHHHHHHhhhcCC-----hHHH
Confidence 9999999999999999999999999999999999999999999998852 2456689998877654 5889
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCc-ccceeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~-~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++ .|+++ .|+.. .++++++|+.|++++. .|+..++||+|+++++.
T Consensus 159 ~~li~eA~~~vg~~g--~i~v~-------~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~--- 226 (545)
T PRK12852 159 GKMIAQAMQKVGNEG--VITVE-------ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKK--- 226 (545)
T ss_pred HHHHHHHHHHhccCC--ceeee-------cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCc---
Confidence 999999999998654 25554 37775 6899999999998873 36788999999999875
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhC------CeEEEEeCC-----
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS----- 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~------~I~vv~~v~----- 319 (568)
+++++++.+ +++.+.+.+++|||++++|++.++++|..+ +|++|++++
T Consensus 227 ----------i~~~~~i~~-----------~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r 285 (545)
T PRK12852 227 ----------LSGLQAMLP-----------VLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (545)
T ss_pred ----------cCCHHHHHH-----------HHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccch
Confidence 344544444 788999999999999999999999999875 899999887
Q ss_pred hhHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC-----------------------
Q 008377 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (568)
+++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++...
T Consensus 286 ~~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (545)
T PRK12852 286 KAMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDK---ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDR 362 (545)
T ss_pred HhHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEc---cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence 88999999999999999 68899999999999998887 688888876521
Q ss_pred -----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|++++.. ++.+|+++
T Consensus 363 ~~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~s~~L~~~~~~-~~~~q~~i 440 (545)
T PRK12852 363 EKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRAKKAVGRINND-NADVQAGI 440 (545)
T ss_pred HHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHHHHHHHHhhcC-CcHHHHHH
Confidence 3789999999999999999999999999999999997 9999999999999999999877 78899999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++.| ++++|+|+.+|++.||.+.|||||+.+|.++|+.|+|+|++||+
T Consensus 441 ~~~a~AL~~ip~~La~NaG~d~~~vl~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~ 517 (545)
T PRK12852 441 NIVLKALEAPIRQIAENAGVEGSIVVGKILENK---SETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVT 517 (545)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998877 46799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCccCCccccccCCCCCCCCCcccc
Q 008377 521 VDQVLKDLIINRDCLFTRCLNCSFSYKWLCS 551 (568)
Q Consensus 521 iD~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (568)
||++|..+|.+ ..+ + +++|++++||
T Consensus 518 id~iI~~~~~~-~~~----~-~~~~~~~~~~ 542 (545)
T PRK12852 518 TEAMVAELPKK-DAA----P-AMPAGGGMGG 542 (545)
T ss_pred HHHHhhcCCCC-CCC----C-CCCCCCCCCC
Confidence 99999887633 222 2 3455555554
No 32
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=9.1e-87 Score=731.22 Aligned_cols=460 Identities=19% Similarity=0.293 Sum_probs=418.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
++++..|++||..|+++++|||||+|++|||+++.|+++|||||+||+++++++|| +|+|+++++++|++++||||
T Consensus 21 ~~a~~~~i~~~~~la~~v~tTLGP~G~~kmi~~~~g~~~ITnDG~TIlk~i~~~~p~~~~~a~ll~~~a~~qd~evGDGT 100 (555)
T PTZ00114 21 DEARQSLLKGIERLADAVAVTLGPKGRNVIIEQEYGSPKITKDGVTVAKAIEFSDRFENVGAQLIRQVASKTNDKAGDGT 100 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCcEEEECCCCCeEEeeChHHHHHhcCcCCcchhHHHHHHHHHHHhhccccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++.+ ..+.+.|.++++|+.++ ++++
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~------v~~~~~l~~va~ts~~~-----~~~l 169 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRP------VKTKEDILNVATISANG-----DVEI 169 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHHcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999875 23678899999988754 5789
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccc-eeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++ .|.+..|+++.|| ++++|++|++++. .|++.++||+|+++|++|+
T Consensus 170 ~~li~eAv~~vg~~g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~- 239 (555)
T PTZ00114 170 GSLIADAMDKVGKDG---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKIS- 239 (555)
T ss_pred HHHHHHHHHHhCcCC---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCC-
Confidence 999999999987542 2566689999998 7999999998862 3588899999999999975
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCC------eEEEEeC-----C
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK------LMVLKIS-----S 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~------I~vv~~v-----~ 319 (568)
+++++.+ +++++.+.+++|+|++++|++.++++|..++ |++++++ +
T Consensus 240 ------------~~~~i~~-----------~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~ 296 (555)
T PTZ00114 240 ------------SIQSILP-----------ILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNR 296 (555)
T ss_pred ------------CHHHHHH-----------HHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcch
Confidence 3445444 6788999999999999999999999998875 9999884 5
Q ss_pred hhHHHHHHHHhCCeecccC------CCCCCCCCcceeEEEEEEEcCeEEEEEEecCC-----------------------
Q 008377 320 KFELRRFCRTTGAVAMLKL------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG----------------------- 370 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~----------------------- 370 (568)
+++|+|||.+|||+++++. ++++++++|+|+.|++.+ ++++++.++..
T Consensus 297 ~~~l~~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~---~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~ 373 (555)
T PTZ00114 297 KDILQDIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTK---DETVILTGGGDKAEIKERVELLRSQIERTTSEYD 373 (555)
T ss_pred HHHHHHHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEe---ceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHH
Confidence 6899999999999999997 778888999999999988 55666665530
Q ss_pred -----------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhc--cccchhH
Q 008377 371 -----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF--KETGLDQ 437 (568)
Q Consensus 371 -----------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~--~~~~~~q 437 (568)
+++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++. ..++++|
T Consensus 374 ~~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~~~~~~ 452 (555)
T PTZ00114 374 KEKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRASKLLDKLEEDNELTPDQR 452 (555)
T ss_pred HHHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHHHHHHHHHhhccCCchHHH
Confidence 36799999999999999999999999999999999988 999999999999999999876 5788999
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHH
Q 008377 438 YAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACT 517 (568)
Q Consensus 438 ~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~ 517 (568)
+++++|++||+.||++|++|||+|+.+++++|++ ++++++|+|+.+|++.||++.|||||+.||.++|+.|+++|++
T Consensus 453 ~~i~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~---~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~ 529 (555)
T PTZ00114 453 TGVKIVRNALRLPTKQIAENAGVEGAVVVEKILE---KKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASL 529 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHh---cCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999977 3467899999999999999999999999999999999999999
Q ss_pred HhchhHHhhcCccCCccc
Q 008377 518 VLRVDQVLKDLIINRDCL 535 (568)
Q Consensus 518 iL~iD~ii~~~~~~~~~~ 535 (568)
||+||++|...+...+..
T Consensus 530 iL~id~iI~~~~~~~~~~ 547 (555)
T PTZ00114 530 MLTTEAAIVDLPKEKKKN 547 (555)
T ss_pred HHhHHHHHHhCCcccccc
Confidence 999999999988665444
No 33
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.7e-86 Score=723.79 Aligned_cols=449 Identities=22% Similarity=0.336 Sum_probs=414.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++..|++||+.++++++|||||+|++|||+++.|+++|||||+||+++|+++|| +++++++++++|++++||||
T Consensus 7 ~~a~~~~i~~~~~l~~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~a~ll~~~a~~qd~e~GDGT 86 (520)
T cd03344 7 EEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELEDPFENMGAQLVKEVASKTNDVAGDGT 86 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcCCCCCcEEEECCCCCeEEEecHHHHHHHcccCCcchhHHHHHHHHHHhhhccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+++++|+||..|++||+.|.+.++++|++++++ .+|.+.|.++++|++++ ++++
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~------i~~~~~l~~va~ts~~~-----~~~l 155 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKP------VKTKEEIAQVATISANG-----DEEI 155 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcCC-----hHHH
Confidence 999999999999999999999999999999999999999999999875 23788999999998865 6899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCccc-ceeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~d-S~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+..+++++ .|.+ ..||+.+| +++++|++|++++. .+++.++||+|+++|+++
T Consensus 156 ~~lv~~A~~~v~~~~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l-- 224 (520)
T cd03344 156 GELIAEAMEKVGKDG-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKI-- 224 (520)
T ss_pred HHHHHHHHHHhccCC-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCC--
Confidence 999999999987543 1333 38999988 79999999998763 134678999999999984
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCe------EEEEeC-----C
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL------MVLKIS-----S 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I------~vv~~v-----~ 319 (568)
++++++.+ +++++.+.|++|||++++|++.++++|.+++| ++++++ +
T Consensus 225 -----------~~~~~l~~-----------~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~ 282 (520)
T cd03344 225 -----------SSIQELLP-----------ILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRR 282 (520)
T ss_pred -----------CCHHHHHH-----------HHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCccc
Confidence 55666655 67889999999999999999999999999988 999987 7
Q ss_pred hhHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC-----------------------
Q 008377 320 KFELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (568)
+++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.+++..
T Consensus 283 ~~~l~~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~ 359 (520)
T cd03344 283 KAMLEDIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTK---DDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDK 359 (520)
T ss_pred HHHHHHHHHHhCCEEecccccCCcccCCHHHCCcceEEEEee---ceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 88999999999999999 78888888999999999877 788999887531
Q ss_pred -----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|+++|.+|++++. .++++|+++
T Consensus 360 ~~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~s~~L~~~~~-~~~~~~~~~ 437 (520)
T cd03344 360 EKLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRASPALDKLKA-LNGDEKLGI 437 (520)
T ss_pred HHHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHHHHHHHHhcc-CChHHHHHH
Confidence 2599999999999999999999999999999999998 999999999999999999988 899999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++.|. ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++||+
T Consensus 438 ~~~a~Al~~ip~~La~NaG~d~~~vi~~l~~~~~----~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~ 513 (520)
T cd03344 438 EIVRRALEAPLRQIAENAGVDGSVVVEKVLESPD----GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLT 513 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhcC----CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999998763 799999999999999999999999999999999999999999
Q ss_pred hhHHhh
Q 008377 521 VDQVLK 526 (568)
Q Consensus 521 iD~ii~ 526 (568)
||.+|.
T Consensus 514 id~~i~ 519 (520)
T cd03344 514 TEALVV 519 (520)
T ss_pred hheEEe
Confidence 999875
No 34
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-89 Score=685.75 Aligned_cols=504 Identities=29% Similarity=0.470 Sum_probs=471.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchh
Q 008377 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (568)
Q Consensus 22 ~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (568)
+|. .++..|..|+..++++++|||||-|++||++|+.|++++||||+|||+.|.++||++++|++.++.|++++|||||
T Consensus 16 sg~-~vr~qnv~a~~~i~nivkss~GPvGldKmlvdd~Gdvt~TndgAtiL~~l~V~HPa~KiLvelaq~qd~evgDgtt 94 (545)
T KOG0360|consen 16 SGE-RVRTQNVMAAMAIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILSLLEVEHPAAKVLVELAQLQDEEVGDGTT 94 (545)
T ss_pred cch-hhhhhhhHHHHHHHHHHHhccCccchhhhccccccceEEeccHHHHHHhhhhcchHHHHHHHHHHhccccccCCce
Confidence 463 6777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc-cCcccch
Q 008377 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQEEIL 180 (568)
Q Consensus 102 t~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~-~~~~~~l 180 (568)
+|++++++||+++.+|...++||..|++||+.|...+++++.+--.. ++|...++.|.++++|+++||. ....++|
T Consensus 95 svviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~---~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f 171 (545)
T KOG0360|consen 95 SVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSK---PVDSLGTQILINLAKTSMSSKIIGMDSDFF 171 (545)
T ss_pred EEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhcccee---ehhhcchHHHHHHHHhhhcceecccchHHH
Confidence 99999999999999999999999999999999999999998764332 2366789999999999999996 4568999
Q ss_pred HHHHHHHHHHhcC---CCCCcccccceEEEEccCCCcccceeEeeEEEeecC--CCCcccccCceEEEEeeccccccccc
Q 008377 181 CPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTSATET 255 (568)
Q Consensus 181 s~lv~~a~~~~~~---~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~--~~~~~~i~n~kIlll~~~Le~~~~~~ 255 (568)
++++++|+..+.- ++...+.++.++|.|..|.+..||.++.|+.++... ..||+++.|+||+++++.|...+.++
T Consensus 172 ~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~l 251 (545)
T KOG0360|consen 172 TEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKL 251 (545)
T ss_pred HHHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEecccccccccc
Confidence 9999999997743 233457788999999999999999999999999887 46899999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeec
Q 008377 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (568)
Q Consensus 256 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii 335 (568)
...+.++++++++++.+.|....++.+++|...|+|||+++++|||.+++||.++|+++|||+.++||++|+++||++++
T Consensus 252 Gv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~ 331 (545)
T KOG0360|consen 252 GVQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLL 331 (545)
T ss_pred cceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC------CCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCC
Q 008377 336 LKLCQP------NPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (568)
Q Consensus 336 ~~~~~l------~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~ 409 (568)
+++.++ .+..+|+|+.|.+.+|+++.++++.+.+. ..++|+|||++++.+||++|++|||+|+++..+++++
T Consensus 332 sSla~l~geetf~~~~lG~a~evvqeri~dde~ilikg~ka--~~aSiILrgaNd~~~DEmers~hdaL~VlkrtLes~~ 409 (545)
T KOG0360|consen 332 SSLANLEGEETFEPASLGSADEVVQERIGDDELILIKGTKA--TSASIILRGANDFMLDEMERSLHDALCVLKRTLESKS 409 (545)
T ss_pred ehhhccccccccChhhccchhHHHHHhcccceeEEeccCcc--ceeeEEEecCCcccHhhhccchhhHHHHHHHHhccCc
Confidence 999865 56679999999999999999999999873 4999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhC--C------CCcee
Q 008377 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS--G------KTKVG 481 (568)
Q Consensus 410 vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~--~------~~~~G 481 (568)
+||||||+|.+|+-||++|+.+...+||+++..||.||.+||++|+.|++.|+.+++++|++.|+. . ..|+|
T Consensus 410 vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~~~k~~G 489 (545)
T KOG0360|consen 410 VVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRLLLKQYG 489 (545)
T ss_pred cccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccccchhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 1 24899
Q ss_pred EeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccC
Q 008377 482 IDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIIN 531 (568)
Q Consensus 482 id~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~ 531 (568)
+|+.+|++.|.++.|++||..+|...|+.|+|.+.++||||+.|.-.|..
T Consensus 490 ldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLriD~li~l~~~~ 539 (545)
T KOG0360|consen 490 LDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRIDDLIKLLPEL 539 (545)
T ss_pred ccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcchhhhhhcCccc
Confidence 99999999999999999999999999999999999999999999876633
No 35
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=1.1e-85 Score=718.74 Aligned_cols=452 Identities=23% Similarity=0.318 Sum_probs=410.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++..|++|++.++++++|||||+||+|||+++.|+++|||||+||+++|+++|| +++++++++++|++++||||
T Consensus 8 ~~a~~~~~~~~~~la~~v~ttlGP~G~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~~~~~akll~~~a~~qd~e~GDGT 87 (524)
T TIGR02348 8 EEARKALLRGVDKLADAVKVTLGPKGRNVVLEKSFGAPTITKDGVTVAKEIELEDKFENMGAQLVKEVASKTNDVAGDGT 87 (524)
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCCCCcEEEECCCCCeeEeccHHHHHHHccCCChhhHHHHHHHHHHHHccCceeCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 89999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+++++|+||..|++||+.|++.++++|++++.+ .++.+.|.++++|+.+ +++++
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~------~~~~~~l~~va~ts~~-----~~~~l 156 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKP------VKGKKEIAQVATISAN-----NDEEI 156 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999885 2367889999988754 47899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCc-ccceeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~-~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+..+++++ .|+ |. .|+.. ++|++++|++|++++. .+++.++||+|+++++.
T Consensus 157 ~~lv~~A~~~v~~~~--~i~-----v~--~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~--- 224 (524)
T TIGR02348 157 GSLIAEAMEKVGKDG--VIT-----VE--ESKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKK--- 224 (524)
T ss_pred HHHHHHHHHHhCcCC--cEe-----ee--cCCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCC---
Confidence 999999999987653 233 33 36666 6699999999998863 24788999999999996
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhC------CeEEEEeCCh----
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISSK---- 320 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~------~I~vv~~v~~---- 320 (568)
+++++++.+ +++.+.+.|++|||++++|++.++++|.++ +|+++++++.
T Consensus 225 ----------i~~~~~i~~-----------~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r 283 (524)
T TIGR02348 225 ----------ISNIKDLLP-----------LLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRR 283 (524)
T ss_pred ----------cCCHHHHHH-----------HHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchh
Confidence 445666544 788999999999999999999999999886 8999999965
Q ss_pred -hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC------------------------
Q 008377 321 -FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (568)
Q Consensus 321 -~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (568)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++.++..
T Consensus 284 ~~~l~~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~ 360 (524)
T TIGR02348 284 KAMLEDIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDK---DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDR 360 (524)
T ss_pred hhhHHHHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEee---cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 7999999999999999 89999999999999998876 78888887642
Q ss_pred ----------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 371 ----------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
.++.+||+|||+|+.+++|.+|+++||++++|+++++| +|||||++|+++|.+|++ +.+.++.+|+++
T Consensus 361 ~~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~ 438 (524)
T TIGR02348 361 EKLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRAAAALEG-LKGDNEDEAIGI 438 (524)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHHHHHHHH-hccCChHHHHHH
Confidence 12378999999999999999999999999999999998 999999999999999998 777889999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++. .+ ++|+|+.+|++.||++.|||||+.+|.++|+.|+++|++|||
T Consensus 439 ~~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~--~~--~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~ 514 (524)
T TIGR02348 439 DIVKRALEAPLRQIAENAGKDGAVVAEKVKES--KG--NFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLT 514 (524)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhc--CC--CeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999875 33 489999999999999999999999999999999999999999
Q ss_pred hhHHhhcCc
Q 008377 521 VDQVLKDLI 529 (568)
Q Consensus 521 iD~ii~~~~ 529 (568)
||++|...|
T Consensus 515 id~ii~~~~ 523 (524)
T TIGR02348 515 TEAVVADKP 523 (524)
T ss_pred HHHHhhcCC
Confidence 999997643
No 36
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1e-84 Score=712.18 Aligned_cols=470 Identities=18% Similarity=0.269 Sum_probs=418.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhcccc----ChHHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQ----HPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~----hP~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++..|++|+..+++++++||||+||+|||+++.|+++|||||+||+++|+++ ||.++|+++++++|++++||||
T Consensus 10 ~~a~~~~~~~~~~la~~v~tTLGP~G~~k~i~~~~g~~~iTnDG~tIlk~i~~~d~~~~pgakll~e~a~~qd~e~GDGT 89 (546)
T PRK14104 10 VDARDRMLRGVDILANAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGT 89 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCceEEEcCCCCeeEeccHHHHHHHhcCCCcccChHHHHHHHHHHhhcccccCcc
Confidence 489999999999999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+++++|+||..|++||+.|.+.+++.|++++++. + +.+.+.++++++.++ ++++
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v----~--~~~~l~~va~~s~~~-----d~~i 158 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKV----T--SNDEIAQVGTISANG-----DAEI 158 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccC----C--CHHHHHHHHHHHhcC-----chHH
Confidence 9999999999999999999999999999999999999999999998862 2 456789998887665 4789
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCc-ccceeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGL-HNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~-~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++ .+++++ ++.. +++++++|++|++++. .++..+++|+|++++..
T Consensus 159 ~~lv~~Av~~vg~~g--~i~v~~-------~~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~--- 226 (546)
T PRK14104 159 GKFLADAMKKVGNEG--VITVEE-------AKSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK--- 226 (546)
T ss_pred HHHHHHHHHHhccCC--ceeeEe-------cccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---
Confidence 999999999997654 355542 3455 5899999999998873 23567889999999854
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHh------CCeEEEEeCC-----
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLKISS----- 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~------~~I~vv~~v~----- 319 (568)
+++++++.+ +++.+.+.+++|||++++|++.++++|.. .+|++|++++
T Consensus 227 ----------i~~~~~i~~-----------~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r 285 (546)
T PRK14104 227 ----------LSSLNELLP-----------LLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRR 285 (546)
T ss_pred ----------hcCHHHHHH-----------HHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcch
Confidence 455655554 78999999999999999999999999984 6899999998
Q ss_pred hhHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC-----------------------
Q 008377 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (568)
+++|+|||.+|||+++++ +++++++++|+|+.+++ +.++++++.+|...
T Consensus 286 ~~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~ 362 (546)
T PRK14104 286 KAMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMI---DKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDR 362 (546)
T ss_pred HHHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEE---cCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 689999999999999999 88999999999999875 66889999888631
Q ss_pred -----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
++.+||+|||+|+.+++|.+|+++||++++++++++| +|||||++|++++.+|+++. ..++.+|+++
T Consensus 363 ~~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~s~~L~~~~-~~~~~~~~~i 440 (546)
T PRK14104 363 EKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRASEQLKGIK-TKNDDQKTGV 440 (546)
T ss_pred HHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHHHHHHHHhh-cCChHHHHHH
Confidence 3899999999999999999999999999999999998 99999999999999999874 4578899999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++.+|+..| +.++|+|+.+|++.||.+.|||||+.||.++|+.|+++|++||+
T Consensus 441 ~~~a~Al~~ip~~La~NaG~d~~~v~~~l~~~~---~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~ 517 (546)
T PRK14104 441 EIVRKALSAPARQIAINAGEDGSVIVGKILEKE---QYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLIT 517 (546)
T ss_pred HHHHHHHHhhHHHHHHhCCCCHHHHHHHHHhcC---CCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754 45799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCccCCccccccCCCCCCCCCcccc
Q 008377 521 VDQVLKDLIINRDCLFTRCLNCSFSYKWLCS 551 (568)
Q Consensus 521 iD~ii~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (568)
||++|..+|++...+ +.++|+++||+
T Consensus 518 id~~I~~~~~~~~~~-----~~~~~~~~~~~ 543 (546)
T PRK14104 518 TEAMVAELPKKGGAG-----PAMPPGGGMGG 543 (546)
T ss_pred HHHHHhcCCcCCCCC-----CCCCCCCCCCC
Confidence 999998877555444 24344567766
No 37
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=1.9e-84 Score=709.86 Aligned_cols=455 Identities=19% Similarity=0.252 Sum_probs=405.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHH----HHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAA----KLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a----~ll~~~~~~~~~~~GDGt 100 (568)
+++++..+++|..++++++|||||+||+|||+++.|+++|||||+|||++|+++||++ +|+++++++|++++||||
T Consensus 9 ~~~~~~~~~g~~~la~~v~tTlGP~G~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~a~~g~~li~~~a~~~~~e~GDGT 88 (529)
T CHL00093 9 DNARRALERGMDILAEAVSVTLGPKGRNVVLEKKYGSPQIVNDGVTIAKEIELEDHIENTGVALIRQAASKTNDVAGDGT 88 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCCeeEeccHHHHHHHccCcCHHHHHHHHHHHHHHHhcCceecCCC
Confidence 4899999999999999999999999999999999999999999999999999999998 588889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+++|+++||+++.+|+++|+||..|++||+.|.+.+++.|++++.+ ..|.+.|.++++++.+ +++.|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~------v~d~~~L~~VA~ts~~-----~~~~l 157 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARP------VEDIQAITQVASISAG-----NDEEV 157 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHHHhcc-----ChHHH
Confidence 999999999999999999999999999999999999999999999875 2367889999988765 57899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--C---Ccc----cccCceEEEEeeccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--G---SIK----NMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~---~~~----~i~n~kIlll~~~Le~~ 251 (568)
++++++|+.++++++ .++++ ..++...++++++|++|++++. . +++ .++||+|++++++|++.
T Consensus 158 ~~lv~eAv~~vg~~g--~i~~~------~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~ 229 (529)
T CHL00093 158 GSMIADAIEKVGREG--VISLE------EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLV 229 (529)
T ss_pred HHHHHHHHHHhccCC--ceeec------CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCch
Confidence 999999999997643 34442 1233456789999999998763 1 243 58999999999998853
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHH--HHh----CCeEEEEeCCh-----
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHF--CER----YKLMVLKISSK----- 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~--l~~----~~I~vv~~v~~----- 320 (568)
+ . .+..+++.+.+.++++||++++|++.++.. +++ .+|+++++++.
T Consensus 230 ~------------~-----------~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k 286 (529)
T CHL00093 230 Q------------Q-----------DLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRK 286 (529)
T ss_pred H------------H-----------HHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchH
Confidence 2 1 244578899999999999999999977754 487 59999999955
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEe---------cCC----------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRN---------EGG---------------- 370 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~---------~~~---------------- 370 (568)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ ++++++++ |+.
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 363 (529)
T CHL00093 287 AMLEDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTK---DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEK 363 (529)
T ss_pred HHHHHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEec---CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 7899999999999999 78999999999999999875 67888873 221
Q ss_pred --------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhc-cccchhHHHHH
Q 008377 371 --------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSF-KETGLDQYAIA 441 (568)
Q Consensus 371 --------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~-~~~~~~q~~~~ 441 (568)
++..+||+|||+|+.+++|.+|+++||++++|+++++| +|||||++|+++|.+|++++. ..++.+|++++
T Consensus 364 l~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~ 442 (529)
T CHL00093 364 LQERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHLSENLKTWAKNNLKEDELIGAL 442 (529)
T ss_pred HHHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHHHHHHHHHhccCCChHHHHHHH
Confidence 12478899999999999999999999999999999998 999999999999999999987 78999999999
Q ss_pred HHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhch
Q 008377 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (568)
Q Consensus 442 ~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~i 521 (568)
+||+||+.||++|++|||+|+.+++++|+.. +.++|+|..+|++.||++.|||||+.||.++|+.|+|+|++||||
T Consensus 443 ~~a~AL~~ip~~La~NaG~d~~~v~~~l~~~----~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 443 IVARAILAPLKRIAENAGKNGSVIIEKVQEQ----DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcc----CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999754 458999999999999999999999999999999999999999999
Q ss_pred hHHhhcCc
Q 008377 522 DQVLKDLI 529 (568)
Q Consensus 522 D~ii~~~~ 529 (568)
|++|..+|
T Consensus 519 d~ii~~~~ 526 (529)
T CHL00093 519 ECIIVDKK 526 (529)
T ss_pred HHHHHcCC
Confidence 99999866
No 38
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-86 Score=660.55 Aligned_cols=510 Identities=27% Similarity=0.491 Sum_probs=486.5
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhh
Q 008377 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQ 93 (568)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~ 93 (568)
+..+...++|. .+...|+.|++++++++++|+||+.|.||+.++.|.+..||||..||+++++.||+|+-+.+.+.+||
T Consensus 8 ~~~~~~re~g~-kvq~~ni~aak~iadvirtclgp~am~kmlld~~g~i~~tndg~ailrei~Vahpaaksmiel~rtqd 86 (527)
T KOG0364|consen 8 LSKNTKRESGR-KVQLGNIQAAKAIADVIRTCLGPRAMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELSRTQD 86 (527)
T ss_pred cccccCcCccc-cccccchhhHHHHHHHHHHhcChHHHHHHhhccCCceEEecCcHHHHHHHhhcCcchhhHhhhhhccc
Confidence 56666666785 78899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc
Q 008377 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ 173 (568)
Q Consensus 94 ~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~ 173 (568)
+++|||||||++|++++|.++..++++++||..|+++|..|+..++..+++.+.+ +|.+|...+.+++++++.+|+
T Consensus 87 eevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~----~d~~~~~km~~vi~~~v~tk~ 162 (527)
T KOG0364|consen 87 EEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIP----VDVKDQAKMLRVINSSVGTKF 162 (527)
T ss_pred ccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhccc----CCcccHHHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999988876 478899999999999999997
Q ss_pred c-CcccchHHHHHHHHHHhcCCCCCcccc-cceEEEEccCCCcccceeEeeEEEeecCCC--CcccccCceEEEEeeccc
Q 008377 174 F-GQEEILCPLIADACIQVCPKNPANFNV-DNVRVAKLLGGGLHNSTIVRGMVLKSDAVG--SIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 174 ~-~~~~~ls~lv~~a~~~~~~~~~~~~~l-~~I~I~k~~Gg~~~dS~li~Givl~~~~~~--~~~~i~n~kIlll~~~Le 249 (568)
. .+++.++++..+|+.+++.+++..||+ .+.++.|++||.+.||++++|+.++++..+ |...++||||++++|+|+
T Consensus 163 ~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~Le 242 (527)
T KOG0364|consen 163 NSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLE 242 (527)
T ss_pred hhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCcc
Confidence 4 578899999999999998765556887 479999999999999999999999988753 788899999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHH
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~ 329 (568)
|.+.+.+.++.+.-.+++...++.|+++++.+++.+....++||++.++++|.+++||-+.||.+++++.+.|-.|++++
T Consensus 243 ykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~a 322 (527)
T KOG0364|consen 243 YKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARA 322 (527)
T ss_pred CCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhh
Confidence 99999999999998999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCCCc-ceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCC
Q 008377 330 TGAVAMLKLCQPNPDDLG-YVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (568)
Q Consensus 330 tGa~ii~~~~~l~~~~lG-~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~ 408 (568)
|||+++++.+++.+.+.| .|+.++..++|+++|.||..|++ ++.|||++|||++.++.|.+|-+.||+.+.|+.+-+|
T Consensus 323 cga~iv~rpedl~e~dvGt~agLf~~kK~gdeyf~f~~~Ck~-pkaCtillrg~skdil~e~ernlqda~~varn~ii~P 401 (527)
T KOG0364|consen 323 CGARIVNRPEDLPERDVGTGAGLFEVKKIGDEYFTFFTDCKE-PKACTILLRGPSKDILNEVERNLQDAMGVARNVIINP 401 (527)
T ss_pred cCceeccChhhCchhccCcccceeeeeccCchhhhhhhhcCC-CcceEEEeccCchhHHHHHHHHhhhHHHHHHHhccCC
Confidence 999999999999999999 58899999999999999999985 9999999999999999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCc
Q 008377 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (568)
Q Consensus 409 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~ 488 (568)
+++||||++||.+|+.|++.+....+.+|..+.+.|.|||.+||+|++|+|.+++..++.++..|..|...+|+|..+|.
T Consensus 402 klvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg~ 481 (527)
T KOG0364|consen 402 KLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETGV 481 (527)
T ss_pred cccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 489 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
++||.+.++|||..+|.+..++|+|+++++||||+++..++
T Consensus 482 iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRIddIvsg~k 522 (527)
T KOG0364|consen 482 IVDMVELGIWEPEAVKLQTGKTAVESACLLLRIDDIVSGKK 522 (527)
T ss_pred EeeeeeccccchhhhhhhhhhHHHHHHHHHHhhhceeeeee
Confidence 99999999999999999999999999999999999998766
No 39
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=7.3e-84 Score=709.04 Aligned_cols=455 Identities=21% Similarity=0.293 Sum_probs=411.9
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhhhccCchh
Q 008377 26 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGAN 101 (568)
Q Consensus 26 ~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGtt 101 (568)
+++...+++|+.|++++++||||+||+|||+++.|+++|||||+||+++|+++||+ |+|+++++++|++++|||||
T Consensus 66 ~ar~~l~~g~~~la~~vktTLGP~G~~kmi~~~~G~~~ITnDG~TIlk~i~~~hP~~~~gakll~~~a~~qd~evGDGTT 145 (600)
T PLN03167 66 SAIKKLQAGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENIGAKLVRQAAAKTNDLAGDGTT 145 (600)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCEEEECCCCCeeEeccHHHHHHHcccCCchhhHHHHHHHHHHHhhhhhhCCCcc
Confidence 69999999999999999999999999999999999999999999999999999995 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccchH
Q 008377 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEILC 181 (568)
Q Consensus 102 t~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~ls 181 (568)
|++||+++||+++.+++++|+||..|++||+.|.+.+++.|++++.+. ++ +.|.+++.++.++ ++.|+
T Consensus 146 TvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v------~d-~~L~~vA~tS~~~-----~~~i~ 213 (600)
T PLN03167 146 TSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEV------ED-SELADVAAVSAGN-----NYEVG 213 (600)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccC------CH-HHHHHHHHHhccC-----cHHHH
Confidence 999999999999999999999999999999999999999999998752 23 5699999888654 57899
Q ss_pred HHHHHHHHHhcCCCCCcccccceEEEEccCCCcccc-eeEeeEEEeecCC---------CCcccccCceEEEEeeccccc
Q 008377 182 PLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 182 ~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~ 251 (568)
+++++|+.++++++ .++++ .|++.+|+ ++++|++|++++. +|++.++||+|+++++.
T Consensus 214 ~liaeAv~~Vg~~g--~i~v~-------~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~---- 280 (600)
T PLN03167 214 NMIAEAMSKVGRKG--VVTLE-------EGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKK---- 280 (600)
T ss_pred HHHHHHHHHhccCC--cEEec-------cCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccc----
Confidence 99999999997654 24444 78999997 8999999998863 57899999999999985
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHH------hCCeEEEEeCC-----h
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE------RYKLMVLKISS-----K 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~------~~~I~vv~~v~-----~ 320 (568)
+++.+++.++ ++.+.+.++++|+++++|++.++++|. ..+|+++++++ +
T Consensus 281 ---------i~~~~~l~~~-----------le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~ 340 (600)
T PLN03167 281 ---------ITNARDLIGI-----------LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKS 340 (600)
T ss_pred ---------cCCHHHHHHH-----------HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchH
Confidence 5677888884 457788999999999999999999998 68899999996 7
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEE-----EcC--------eEEEEEEecCC------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEE-----IGG--------ARVTIVRNEGG------------ 370 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~-----ig~--------~~~~~~~~~~~------------ 370 (568)
++|+|||.+|||++++ ++++++++++|+|+.|++.+ +|+ +++.+|+++..
T Consensus 341 ~~L~dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~ 420 (600)
T PLN03167 341 QYLDDIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLN 420 (600)
T ss_pred HHHHHHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHH
Confidence 7999999999999999 68888889999999999987 776 47788776531
Q ss_pred -----CCceEEEE-EcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHH-HHHHH
Q 008377 371 -----GNSVSTVV-LRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQY-AIAKF 443 (568)
Q Consensus 371 -----~~~~~TIl-lrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~-~~~~~ 443 (568)
-+..+|++ +||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.+.++++|+ ++++|
T Consensus 421 ~Ri~~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~ 499 (600)
T PLN03167 421 ERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIV 499 (600)
T ss_pred HHHhhcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Confidence 02245555 999999999999999999999999999999 99999999999999999998888888886 59999
Q ss_pred HHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhH
Q 008377 444 AESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQ 523 (568)
Q Consensus 444 a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ 523 (568)
++||+.||++|++|||+|+.+++++|++. ++.++|||..+|++.||++.|||||+.||+++|+.|+++|++||+||+
T Consensus 500 ~~Al~~p~r~La~NAG~d~~~vv~~L~~~---~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~iD~ 576 (600)
T PLN03167 500 KRALSYPLKLIAKNAGVNGSVVSEKVLSN---DNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDC 576 (600)
T ss_pred HHHHhcchhhhhhcCCCCHHHHHHHHHhc---CCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999754 356899999999999999999999999999999999999999999999
Q ss_pred HhhcCc
Q 008377 524 VLKDLI 529 (568)
Q Consensus 524 ii~~~~ 529 (568)
+|..++
T Consensus 577 iI~~~~ 582 (600)
T PLN03167 577 VVVEIK 582 (600)
T ss_pred HhhcCC
Confidence 999875
No 40
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-80 Score=617.16 Aligned_cols=495 Identities=25% Similarity=0.407 Sum_probs=470.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHH
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTI 104 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~v 104 (568)
.+++.-|+.++..+.+++++.+||.|..||++++.|++.+|.||.+++.+|+++||-+-++..++-+|++..|||||++|
T Consensus 16 ~aal~iNis~AigLqsV~~snlgPkgt~KmlvsgagdIklakdgnvLl~emQiqhPTa~lIakaatAqdd~tGDGttS~V 95 (520)
T KOG0359|consen 16 QAALALNISAAIGLQSVLVLNLGPKGTEKMLVSGAGDIKLAKDGNVLLKEMQIQHPTASLIAKVATAQDDITGDGTTSVV 95 (520)
T ss_pred hcceeeccccccceeeeehhccCchhHHHhccCCccceEEEecchhhHHHHhhcCchHHHHHHHHHHhhcccCCCcceEE
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-CcccchHHH
Q 008377 105 SFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPL 183 (568)
Q Consensus 105 lL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~~~ls~l 183 (568)
+|+++|+++|...+..|+||..|.+||+.|.+.++++|+....+ .+++.|..+++|++++|.. ...+.++++
T Consensus 96 lligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~-------~~~~~L~~va~tsl~Tkv~~~la~~lt~~ 168 (520)
T KOG0359|consen 96 LLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSRE-------VDRETLKDVARTSLRTKVHAELADVLTPI 168 (520)
T ss_pred EeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccc-------hhHHHHHHHHHHhhcCcccHHHHhHhHHH
Confidence 99999999999999999999999999999999999999965543 3689999999999999974 568899999
Q ss_pred HHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccceEEe
Q 008377 184 IADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLI 261 (568)
Q Consensus 184 v~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i 261 (568)
+++|+..+.+ ....+|+.+++|+++.-++..|+.+++|++++++.- .||++++|+.|++.|.+|||+|++.++.+.+
T Consensus 169 vv~aVl~i~~-~~~~idl~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~EinsgffY 247 (520)
T KOG0359|consen 169 VVDSVLCIRR-QEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGFFY 247 (520)
T ss_pred HHhhheeecc-CCCCcchhHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccchhc
Confidence 9999998873 234589999999999999999999999999998874 5999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhcCC----cEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeeccc
Q 008377 262 HNAEQLENYAKTEEAKVEGLIKAVAESGA----EVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLK 337 (568)
Q Consensus 262 ~~~~~l~~~~~~E~~~l~~~v~~l~~~~v----~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~ 337 (568)
++.+|-+.+...|+.++.+.+++|++++. -||+.|++|||..++.|+++||+++||.++..|||+..+||+..+++
T Consensus 248 sta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ns 327 (520)
T KOG0359|consen 248 STAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAVNS 327 (520)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccceecc
Confidence 99999999999999999999999998864 37899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChH
Q 008377 338 LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAAT 417 (568)
Q Consensus 338 ~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~ 417 (568)
++|++|+.+|+|+.|++.++|+++|+|+++|++ +..|||+++||+++-+.+++.+++|++++++++++++.++||+|++
T Consensus 328 vddLtp~~LG~aglVye~tlGEEkfTFIE~~~~-p~S~TiLikgpnkht~tQikdairdglrav~ntl~d~~~i~Gaga~ 406 (520)
T KOG0359|consen 328 VDDLTPDYLGYAGLVYEYTLGEEKFTFIEKCNN-PSSVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDKCGIPGAGAF 406 (520)
T ss_pred cccCChhhccccceeEEeeccceeeEeeecCCC-CcceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhcccccCchHH
Confidence 999999999999999999999999999999985 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCc
Q 008377 418 EIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNV 497 (568)
Q Consensus 418 E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi 497 (568)
|..++++|+...++.+++.++++++||+||..||++|++|+|+|+.+.+.+|...|..+ ..|+|+.+|+..++...||
T Consensus 407 ~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~--~~g~dl~~g~~~~~~~~gi 484 (520)
T KOG0359|consen 407 EVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVT--LRGLDLFRGEECDPSRKGI 484 (520)
T ss_pred HHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhh--hcccccccCCccchhhccc
Confidence 99999999988888999999999999999999999999999999999999999998765 4599999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhchhHHhhcCcc
Q 008377 498 WDLYVTKFFALKYAADAACTVLRVDQVLKDLII 530 (568)
Q Consensus 498 ~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~ 530 (568)
||.+.||++.|..++-.|+.||-+|+|+.+..+
T Consensus 485 ~Dny~v~~~~l~s~~via~nlLlvDEi~rAG~~ 517 (520)
T KOG0359|consen 485 YDNYSVKKQLLRSEAVIATNLLLVDEIIRAGMS 517 (520)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHHcccc
Confidence 999999999999999999999999999988763
No 41
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-68 Score=515.69 Aligned_cols=371 Identities=29% Similarity=0.467 Sum_probs=350.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCch
Q 008377 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (568)
..| .++.++|+.+.+++++++++|+||+|++|+++.+.|++++|||| .|++++++...+.+|+.++||||
T Consensus 24 i~G-~ea~Ks~I~agkaVA~~lrtSLGPkGlDK~l~~pdgditvtndg---------d~~IakLmv~LS~sqd~eIgdGt 93 (400)
T KOG0357|consen 24 LFG-LDAVKSHIGAAKAVARILRTSLGPKGLDKMLVSPDGDITVTNDG---------VHQIAKLIVILSKSQDDEIGDGT 93 (400)
T ss_pred hhH-HHHhhhhhHHHHHHHHHHHhhcCccccccccccCCCCceeeecc---------chHHHHHHHHhcccchhhhccCC
Confidence 345 48999999999999999999999999999999999999999999 78999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
|.+++|++++++++.+++.+|+||..|.+||..+.+.+++.|++.+.+. +
T Consensus 94 TgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~----e-------------------------- 143 (400)
T KOG0357|consen 94 TGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPF----E-------------------------- 143 (400)
T ss_pred cccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcccc----c--------------------------
Confidence 9999999999999999999999999999999999999988877764320 0
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCceEEEEeeccccccccccceEE
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATETKGTVL 260 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~kIlll~~~Le~~~~~~~~~i~ 260 (568)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCC
Q 008377 261 IHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQ 340 (568)
Q Consensus 261 i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~ 340 (568)
+.++++++++.|+++++|||++||.|.++|-+++..++|||.-.++|.||.+||++++.+|++
T Consensus 144 -----------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~e 206 (400)
T KOG0357|consen 144 -----------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSE 206 (400)
T ss_pred -----------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhh
Confidence 333788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeEEEEEEEcC--eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHH
Q 008377 341 PNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATE 418 (568)
Q Consensus 341 l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E 418 (568)
++++++|+|+.|++.++|. +++..+++|++ ++.+||.+||+++.+++|.+|++|||||++|+.+++.++|+|||++|
T Consensus 207 L~~~kLG~aglVrE~sfgttkdkmlviEqc~n-skaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaE 285 (400)
T KOG0357|consen 207 LTAEKLGFAGLVREISFGTTKDKMLVIEQCKN-SKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 285 (400)
T ss_pred hCHhhccccceEEEEecccccceEEEEEecCC-CceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHH
Confidence 9999999999999999994 79999999995 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCceeEeccCCcccccccCCc
Q 008377 419 IELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENGVCADISTMNV 497 (568)
Q Consensus 419 ~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~-~~~~~Gid~~~~~~~d~~~~gi 497 (568)
+.||-++.+.+.++++.+||++++||+||++||..|++|+|++|++.++++++++-+ +++.+|+|+......||.+.+|
T Consensus 286 iscslav~~ead~~~g~eqya~rafa~ale~ipmalaensgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~v 365 (400)
T KOG0357|consen 286 ISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAENSGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHV 365 (400)
T ss_pred hhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhccCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999988754 5678899998888899999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 498 WDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 498 ~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+|++..|++.+..|++++.|||+||+|+....
T Consensus 366 ie~l~~KkqQi~laTQ~vrMiLKiddv~~~~~ 397 (400)
T KOG0357|consen 366 IETLIGKKQQISLATQMVRMILKIDDVRKPGE 397 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhccceecCCC
Confidence 99999999999999999999999999997644
No 42
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-48 Score=400.84 Aligned_cols=451 Identities=20% Similarity=0.289 Sum_probs=384.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (568)
.+++...+.++..|++++..|+||+|++++|-...|.|.|||||.|+.+++.+.+++ |+++++.+...++..||||
T Consensus 23 ~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~va~~tN~~agdGt 102 (550)
T KOG0356|consen 23 KDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQDVANNTNEEAGDGT 102 (550)
T ss_pred HHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHHHHhhccCccccCc
Confidence 378999999999999999999999999999999999999999999999999998887 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||+.+|+.++..++.+-+.+|..|..|.+|...|.+...+.|.+++.+ ....+++.+++..+- +.+.+.
T Consensus 103 ttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~------Vtt~eeIaqVAtiSA-----ngD~~i 171 (550)
T KOG0356|consen 103 TTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKP------VTTPEEIAQVATISA-----NGDKEI 171 (550)
T ss_pred chHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCC------CCCHHHHHHHHhhhc-----CCcHHH
Confidence 999999999999999999999999999999999999999999999986 346788999886543 447888
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCccc-ceeEeeEEEeecCCC---------CcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHN-STIVRGMVLKSDAVG---------SIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~d-S~li~Givl~~~~~~---------~~~~i~n~kIlll~~~Le~ 250 (568)
.+++.+|+.++++++. +.+. .|....| -++++|+-|++++.+ +-.++++|++++.+..
T Consensus 172 g~li~~a~~kvG~~GV--Itv~-------~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk--- 239 (550)
T KOG0356|consen 172 GNLISDAMKKVGRKGV--ITVK-------DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK--- 239 (550)
T ss_pred HHHHHHHHHHhCcCCe--EEee-------cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh---
Confidence 9999999999988764 2222 5666666 479999999998731 2334667777766654
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHH--h----CCeEEEEeCChhH--
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCE--R----YKLMVLKISSKFE-- 322 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~--~----~~I~vv~~v~~~~-- 322 (568)
+++++++.+. ++.-.+...++++++.+|+..++..|. + -.+++++.+...|
T Consensus 240 ----------i~~v~~ivp~-----------LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnr 298 (550)
T KOG0356|consen 240 ----------ISSVQSIVPA-----------LELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNR 298 (550)
T ss_pred ----------hhHHHHHhHH-----------HHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchH
Confidence 5677777773 445556678999999999999887664 3 3577888887654
Q ss_pred ---HHHHHHHhCCeecc------cCCCCCCCCCcceeEEEEEEEcCeEEEEEEec-------------------------
Q 008377 323 ---LRRFCRTTGAVAML------KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNE------------------------- 368 (568)
Q Consensus 323 ---Le~Ia~~tGa~ii~------~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~------------------------- 368 (568)
+.+++.+||+.++. ++++.+++++|.|..+.+..- .-..+.+-
T Consensus 299 k~~l~Diai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd---~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye 375 (550)
T KOG0356|consen 299 KNLLKDIAILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKD---DTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYE 375 (550)
T ss_pred HHhhhHHHHHhhhhhhccchhhcccccCchhhcCcceeEEEecC---cceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999986 344567789999999877541 11111110
Q ss_pred ---------CCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHH
Q 008377 369 ---------GGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYA 439 (568)
Q Consensus 369 ---------~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~ 439 (568)
+....+++|.+.|.++.+++|.+.+++||++++++++++| +|||||++.++++..|.+....-...++.+
T Consensus 376 ~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all~~~~~l~~lk~~~~~~~k~G 454 (550)
T KOG0356|consen 376 KEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALLRAIPVLDELKATNNFDQKVG 454 (550)
T ss_pred HhHHHHHHHHhcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHHHhhhhhhhcccccchHhhhh
Confidence 0157899999999999999999999999999999999999 999999999999999998766333456678
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHh
Q 008377 440 IAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVL 519 (568)
Q Consensus 440 ~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL 519 (568)
++++.+||..|..+++.|||.|+..++.+++. . .+|||..+++++|+.+.||+||+.|.+.+|..|..+|++++
T Consensus 455 ~eiv~~Al~~P~~~IakNAGvdg~~vv~Kv~~-----~-~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~ 528 (550)
T KOG0356|consen 455 VEIVKKALRLPAQTIAKNAGVDGSVVVEKVLN-----D-DYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLT 528 (550)
T ss_pred HHHHHHHHhhhHHHHHHhcCCchHHHHHHHHh-----h-hhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHh
Confidence 99999999999999999999999999999982 2 78999999999999999999999999999999999999999
Q ss_pred chhHHhhcCc
Q 008377 520 RVDQVLKDLI 529 (568)
Q Consensus 520 ~iD~ii~~~~ 529 (568)
+++.+|...|
T Consensus 529 tte~vvteip 538 (550)
T KOG0356|consen 529 TTEAVVTEIP 538 (550)
T ss_pred hheeEEEecc
Confidence 9999998877
No 43
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=3.5e-39 Score=322.64 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=209.6
Q ss_pred cccchHHHHHHHHHHhcCCC--CCccccc-ceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeecccc
Q 008377 176 QEEILCPLIADACIQVCPKN--PANFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 176 ~~~~ls~lv~~a~~~~~~~~--~~~~~l~-~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~ 250 (568)
+.++|++++++|+..+.+.. ...+|++ +|+|.+++||++.||++++|+++++.+. .||+.++||||++++++|++
T Consensus 19 ~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~~~~m~~~i~n~kIlll~~~Le~ 98 (261)
T cd03334 19 WLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVAHKRMPSKIKNPRILLLQGPLEY 98 (261)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCCCccCCcccCCCcEEEEeeeecc
Confidence 46789999999999986431 2358876 5999999999999999999999998874 58999999999999999999
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHh
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~t 330 (568)
++++ +++++++.+.+.|++++++++++|.+.|+||||++++|++.+++||.++||++++++++++|+|||++|
T Consensus 99 ~~~~-------~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v~~v~~~dl~rIa~~t 171 (261)
T cd03334 99 QRVE-------NKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLVLNVKPSVLERISRCT 171 (261)
T ss_pred cccc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEEEecCHHHHHHHHHHh
Confidence 9886 356889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccC-CCCCCCCCcceeEEEEEEEcC-----eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHH
Q 008377 331 GAVAMLKL-CQPNPDDLGYVDSVSVEEIGG-----ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (568)
Q Consensus 331 Ga~ii~~~-~~l~~~~lG~~~~v~~~~ig~-----~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~ 404 (568)
||++++++ ++++++.+|+|+.|+++++|+ ++|++|++|+. ++.+||+|||+|+.+++|+||+++||+++++++
T Consensus 172 Ga~ii~~i~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~-~~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~ 250 (261)
T cd03334 172 GADIISSMDDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPK-ELGCTILLRGGDLEELKKVKRVVEFMVFAAYHL 250 (261)
T ss_pred CCEEecChhhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCC-CceeEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999994 588999999999999999996 69999999974 889999999999999999999999999999999
Q ss_pred HhCCCcc
Q 008377 405 CRDSRIV 411 (568)
Q Consensus 405 ~~~~~vv 411 (568)
..+..++
T Consensus 251 ~le~~~~ 257 (261)
T cd03334 251 KLETSFL 257 (261)
T ss_pred HHhHHHH
Confidence 8877544
No 44
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.6e-34 Score=281.12 Aligned_cols=206 Identities=27% Similarity=0.462 Sum_probs=192.6
Q ss_pred HHHHHHHHHhhhccccCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccc
Q 008377 159 EEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM 236 (568)
Q Consensus 159 ~~l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i 236 (568)
+.|.++++|+++||...+.+++++++++|+..+++++. .++.++|+|++++||+++||++++|++|++++. .||+.+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~-~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m~~~~ 80 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNR-MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYMPKRL 80 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCC-CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCCCeEc
Confidence 46899999999999955689999999999999977543 577889999999999999999999999999874 588999
Q ss_pred cCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEE
Q 008377 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (568)
Q Consensus 237 ~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~ 316 (568)
+||||++++++|++ ||+++++|++.++++|.++||++++
T Consensus 81 ~n~~Ill~~~~le~-----------------------------------------vii~~~~I~~~al~~l~~~~I~~v~ 119 (209)
T cd03333 81 ENAKILLLDCPLEY-----------------------------------------VVIAEKGIDDLALHYLAKAGIMAVR 119 (209)
T ss_pred CCCcEEEEeCCeeE-----------------------------------------EEEecCcccHHHHHHHHHCCCEEEE
Confidence 99999999999886 9999999999999999999999999
Q ss_pred eCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhh
Q 008377 317 ISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDD 396 (568)
Q Consensus 317 ~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~d 396 (568)
++++++|+|||++|||++++++++++++.+|+|+++++.++|+++|++|++++ .+..+||+|||+|+.+++|.||+++|
T Consensus 120 ~~~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~-~~~~~tIllrG~t~~~l~e~kr~l~d 198 (209)
T cd03333 120 RVKKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGEEKLTFIEGCK-GGKAATILLRGATEVELDEVKRSLHD 198 (209)
T ss_pred eCCHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECCeEEEEEEcCC-CCCEEEEEEECCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 48899999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 008377 397 GVNTYKAMCRD 407 (568)
Q Consensus 397 al~~l~~~~~~ 407 (568)
|++++++++++
T Consensus 199 al~~~~~~~~~ 209 (209)
T cd03333 199 ALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHhhC
Confidence 99999999864
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=99.79 E-value=9.1e-19 Score=198.91 Aligned_cols=232 Identities=16% Similarity=0.233 Sum_probs=198.8
Q ss_pred ccchHHHHHHHHHHhcCCC--CCcccc-cceEEEEccCCCcccceeEeeEEEeecC--CCCcccccCceEEEEeeccccc
Q 008377 177 EEILCPLIADACIQVCPKN--PANFNV-DNVRVAKLLGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 177 ~~~ls~lv~~a~~~~~~~~--~~~~~l-~~I~I~k~~Gg~~~dS~li~Givl~~~~--~~~~~~i~n~kIlll~~~Le~~ 251 (568)
.+.+..++.+|...+.++. ....|+ ++++|.++.||...||+++.|+++.+.. ..|..++++|||+++.++|+++
T Consensus 334 ~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyq 413 (1598)
T KOG0230|consen 334 LDIITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQ 413 (1598)
T ss_pred HHHHHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhh
Confidence 4567889999999887752 122343 7899999999999999999999999987 4689999999999999999998
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhC
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tG 331 (568)
+-..+ ...++..++.|.++++.++++|...+++++++.++|+..|+++|...+|.++-++++.-|+||+++||
T Consensus 414 risn~-------lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tg 486 (1598)
T KOG0230|consen 414 RISNQ-------LSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTG 486 (1598)
T ss_pred hhhcc-------ccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhc
Confidence 64321 22355556668999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccCCCCCCCCCcceeEEEEEEEc-----CeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHh
Q 008377 332 AVAMLKLCQPNPDDLGYVDSVSVEEIG-----GARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCR 406 (568)
Q Consensus 332 a~ii~~~~~l~~~~lG~~~~v~~~~ig-----~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~ 406 (568)
|.|+++++.++...+|+|+.+++.++- .+.+.+|++|+. ...|||+|||.....+.+.++.++-+..+..+..-
T Consensus 487 a~I~~siDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~-~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~L 565 (1598)
T KOG0230|consen 487 ADIVPSVDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPK-PLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLAL 565 (1598)
T ss_pred CceecchhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCC-CCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887765 467889999984 89999999999999999999999998888877654
Q ss_pred CCCcccCCCh
Q 008377 407 DSRIVPGAAA 416 (568)
Q Consensus 407 ~~~vvpGGG~ 416 (568)
+..++.--|+
T Consensus 566 E~SflaDe~a 575 (1598)
T KOG0230|consen 566 ETSFLADEGA 575 (1598)
T ss_pred hhhhhhccCC
Confidence 4445544444
No 46
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=70.64 E-value=16 Score=29.99 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRT 329 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~ 329 (568)
++-++.|.+-.+.+|+.++++++... .++.++||.++.-.+..+|-+.|-.
T Consensus 19 kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi 73 (84)
T PRK13600 19 KETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFFKSKHALGKHVGI 73 (84)
T ss_pred HHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCC
Confidence 44566777778899999999999866 4678899999999999888776643
No 47
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=63.32 E-value=29 Score=30.60 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
..+.|++.|+++|+++ .+.+.+..+|..+||-++...+..-=+.|-....+
T Consensus 57 ~a~~l~~~gvdvvi~~-~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g 107 (121)
T COG1433 57 IAELLVDEGVDVVIAS-NIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEG 107 (121)
T ss_pred HHHHHHHcCCCEEEEC-ccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcC
Confidence 4677889999999997 88999999999999999998874333334443333
No 48
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=62.15 E-value=19 Score=30.06 Aligned_cols=43 Identities=21% Similarity=0.303 Sum_probs=35.1
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
..+.|...++++|++. .|.+.+.+.|.++||-++.... .+++.
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~-~~i~~ 97 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE-GTVEE 97 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC-CCHHH
Confidence 4556677899999996 6999999999999999998776 44443
No 49
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=58.73 E-value=27 Score=28.48 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=30.7
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeC
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS 318 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v 318 (568)
.+.|...++++|++. .|.+.+...|.++||-++...
T Consensus 46 ~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~ 81 (94)
T PF02579_consen 46 AKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGA 81 (94)
T ss_dssp HHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEEST
T ss_pred HHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcC
Confidence 445566899999986 689999999999999999983
No 50
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=51.85 E-value=40 Score=27.91 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
..+.+...++++|++. .|.+.+...|.++||-++....
T Consensus 53 ~~~~l~~~~v~~vi~~-~iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVG-GIGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEc-ccCccHHHHHHHcCCEEEEcCC
Confidence 3455667899999998 5999999999999999998776
No 51
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=49.00 E-value=61 Score=26.33 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
.++.|.+-.+.+|+.+.+.++... +++.+++|.++...+..+ |..++|-.
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~s~~e---LG~a~G~~ 72 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVSKVDSMKK---LGKACGIE 72 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEECCHHH---HHHHHCCC
Confidence 456677778999999999999865 456789999988876655 45555544
No 52
>PRK06683 hypothetical protein; Provisional
Probab=48.22 E-value=63 Score=26.30 Aligned_cols=51 Identities=12% Similarity=0.139 Sum_probs=38.0
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHH----HHHhCCeEEEEeCChhHHHHHHHHhCCee
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAVA 334 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~----~l~~~~I~vv~~v~~~~Le~Ia~~tGa~i 334 (568)
.++.|.+..+.+||.+.+.++...+ ++..++|.++...+.. .|..++|-.+
T Consensus 19 v~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~t~~---eLG~A~G~~~ 73 (82)
T PRK06683 19 TLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVR---KLGKVAGIQV 73 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEECCHH---HHHHHhCCcc
Confidence 3456677789999999999998764 5677999998887554 4566666543
No 53
>PRK07283 hypothetical protein; Provisional
Probab=46.66 E-value=70 Score=26.89 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.2
Q ss_pred HHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
..+.|.+-.+.+||.+.+.++... +.+..++|.++...+.++ |..++|-
T Consensus 26 v~~aik~gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~e---LG~a~Gk 78 (98)
T PRK07283 26 VVKAIQSGQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLE---LSAAVGK 78 (98)
T ss_pred HHHHHHcCCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHH---HHHHhCC
Confidence 456667777899999999999877 566678999988876654 5666663
No 54
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=46.61 E-value=69 Score=26.09 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=36.5
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHH----HHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~----~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
.++.|.+..+.+||++.+.++.... ++..++|.++..-+..+ |.+++|-.
T Consensus 16 vlkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~~t~~e---LG~A~G~~ 69 (82)
T PRK13601 16 TLKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYIDTMKE---LGVMCGID 69 (82)
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEeCCHHH---HHHHHCCc
Confidence 4456677789999999999988664 56779999976665554 45566654
No 55
>PRK07714 hypothetical protein; Provisional
Probab=44.62 E-value=81 Score=26.57 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.+.+-.+.+||.+.+.++... +++..++|.++...+.++| ..++|-.
T Consensus 26 v~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eL---G~a~Gk~ 79 (100)
T PRK07714 26 VLKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQL---GHAIGKD 79 (100)
T ss_pred HHHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHH---HHHhCCC
Confidence 456667778899999999998765 3456789999887766554 5566643
No 56
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=40.61 E-value=96 Score=26.13 Aligned_cols=49 Identities=18% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeC-ChhHHHHHHHHhCC
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKIS-SKFELRRFCRTTGA 332 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v-~~~~Le~Ia~~tGa 332 (568)
.++.|.+..+.+||.+.+.++... +++.+++|.++... ++++| .+++|-
T Consensus 24 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eL---G~a~Gk 77 (99)
T PRK01018 24 TIKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVEL---GTLCGK 77 (99)
T ss_pred HHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHH---HHHhCC
Confidence 456677778999999999988765 46678999988874 56554 566664
No 57
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=38.68 E-value=74 Score=26.19 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCCcEEEecCCccHHHH-----HHHHhCCeEEEEeCChhHHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEMAL-----HFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~al-----~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
++..+.+.+..+.+|+.+.++++... .++.+++|.++...++.+|-+.+
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~ 74 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELGRAC 74 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHHHHT
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHHHHH
Confidence 44566777778899999999987544 36788999999998666554443
No 58
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=37.54 E-value=1e+02 Score=27.09 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-H-H---HHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-A-L---HFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-a-l---~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
++.++.|.+..+.+||.+.++++. . . .++.+++|.++..-++++| ..++|-
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eL---G~a~Gk 91 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDL---GKAAGL 91 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHH---HHHhCC
Confidence 345666667778999999999874 3 2 4567889998877766555 444554
No 59
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=35.34 E-value=1.2e+02 Score=28.93 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=42.9
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCC----eEEEEeCChh
Q 008377 264 AEQLENYAKTE---EAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYK----LMVLKISSKF 321 (568)
Q Consensus 264 ~~~l~~~~~~E---~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~----I~vv~~v~~~ 321 (568)
.++...++... .-.+++.++.+.+.++++++++.+.++.+--+|.+.. |-++..++.+
T Consensus 61 ~~Eile~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~ 125 (220)
T COG4359 61 LEEILEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNN 125 (220)
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecC
Confidence 34555554432 2358889999999999999999999998887776644 7777776544
No 60
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=35.14 E-value=1.1e+02 Score=26.57 Aligned_cols=49 Identities=20% Similarity=0.219 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-H----HHHHHhCCeEEEEeCChhHHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-A----LHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-a----l~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
++..+.|.+-.+.+|+.+.++++. . .+++.+.+|..+..-++++|-+.+
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~ 85 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLGAAA 85 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHh
Confidence 345566666778999999999764 3 245788999988877776654443
No 61
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=33.50 E-value=1.3e+02 Score=26.19 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCCcEEEecCCccHH-HH----HHHHhCCeEEEEeCChhHHHHHHH
Q 008377 278 VEGLIKAVAESGAEVIVSGAAVGEM-AL----HFCERYKLMVLKISSKFELRRFCR 328 (568)
Q Consensus 278 l~~~v~~l~~~~v~vVl~~~~I~~~-al----~~l~~~~I~vv~~v~~~~Le~Ia~ 328 (568)
++..++.|.+-.+.+|+.+.+++|. .. .+|++++|.++.-.++.+|-+.+-
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g 87 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGKAVG 87 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhC
Confidence 4455666666678999999999944 22 467789999999999888866654
No 62
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=31.27 E-value=1.5e+02 Score=25.46 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=37.1
Q ss_pred HHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEe-CChhHHHHHHHHhCCe
Q 008377 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKI-SSKFELRRFCRTTGAV 333 (568)
Q Consensus 280 ~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~-v~~~~Le~Ia~~tGa~ 333 (568)
+.++.|.+..+.+||++.+.++... +++..++|.++.. -+.. .|..++|-+
T Consensus 32 ~vlkalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~---eLG~A~Gk~ 87 (108)
T PTZ00106 32 STLKALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNN---DLGTACGRH 87 (108)
T ss_pred HHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHH---HHHHHhCCc
Confidence 4556677778999999999998855 5677789998875 4554 456666643
No 63
>cd00852 NifB NifB belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme as part of nitrogen fixation in bacteria. This domain is sometimes found fused to a N-terminal domain (the Radical SAM domain) in nifB-like proteins.
Probab=30.20 E-value=1.3e+02 Score=25.26 Aligned_cols=31 Identities=13% Similarity=0.240 Sum_probs=27.2
Q ss_pred cCCcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 288 ~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
.++++|++. +|.+.+...|.++||-++....
T Consensus 64 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 94 (106)
T cd00852 64 SDCDAVLCA-KIGDEPKEKLEEAGIEVIEAYA 94 (106)
T ss_pred cCCcEEeeh-hhCccHHHHHHHCCCEEEEecC
Confidence 589998885 8999999999999999996654
No 64
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=30.00 E-value=1.4e+02 Score=27.60 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEe--CC-h----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI--SS-K----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~--v~-~----~~Le~Ia~~tGa~ 333 (568)
++.|.+.+++|||......+...+.|.+.||.++-. .+ . +.++.++.++|-.
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~~ 111 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGAE 111 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCh
Confidence 467788899999987666665677889999854322 22 2 3477788877753
No 65
>PF12846 AAA_10: AAA-like domain
Probab=29.60 E-value=1.4e+02 Score=29.72 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCCcEEEecCCccHHH-----HHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 277 KVEGLIKAVAESGAEVIVSGAAVGEMA-----LHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 277 ~l~~~v~~l~~~~v~vVl~~~~I~~~a-----l~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
.+.+++....+.|+.+++....+++.. ..++.+.+..++-++...+.+.+++..|.+
T Consensus 241 ~~~~~~~~~Rk~g~~~~l~tQ~~~~l~~~~~~~~i~~n~~~~i~~~~~~~~~~~l~~~~gl~ 302 (304)
T PF12846_consen 241 FLDELLREGRKYGVGLILATQSPSDLPKSPIEDAILANCNTKIIFRLEDSDDAELAELFGLT 302 (304)
T ss_pred hhhHHHHHHHhcCCEEEEeeCCHHHHhccchHHHHHHhCCcEEEecCChHHHHHHHHHcCcC
Confidence 455677888899999999999999888 789999999999999888888899988764
No 66
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=28.55 E-value=2e+02 Score=24.55 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHH----HHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALH----FCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~----~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+-.+.+||.+.+.++.... ++..++|.++...+.++ |..++|-.
T Consensus 25 v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~e---Lg~a~Gk~ 78 (104)
T PRK05583 25 CEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEE---LGNAIGRD 78 (104)
T ss_pred HHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHH---HHHHhCCC
Confidence 4456677779999999999887653 44567898888866655 55666643
No 67
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=26.61 E-value=2.2e+02 Score=24.72 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCcEEEecC-----CccHHHHHHHHhCCeEEEEeCChhHHHHH
Q 008377 277 KVEGLIKAVAESGAEVIVSGA-----AVGEMALHFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 277 ~l~~~v~~l~~~~v~vVl~~~-----~I~~~al~~l~~~~I~vv~~v~~~~Le~I 326 (568)
.+.++++.+.+.|+--+.+.. .+++.++++++++++.++.-+..--+.+|
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lPli~ip~~~~f~~I 114 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLPLIEIPWEVPFSDI 114 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCCEEEeCCCCCHHHH
Confidence 455678999999876555544 49999999999999999987765444333
No 68
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.13 E-value=1.8e+02 Score=28.21 Aligned_cols=52 Identities=12% Similarity=0.143 Sum_probs=37.4
Q ss_pred HHHHHhcCCcEEEecCCccHH-HHHHHHhCCeEEEEeC--C----hhHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKIS--S----KFELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~-al~~l~~~~I~vv~~v--~----~~~Le~Ia~~tGa~ 333 (568)
+|+|.+.+++|||....-++. ..+.|.+.+|.++-.- . .+.++.|++++|-.
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 567889999999987655454 4778888988655432 2 23488889988875
No 69
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=25.88 E-value=1.5e+02 Score=29.80 Aligned_cols=52 Identities=10% Similarity=0.045 Sum_probs=39.5
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEe--CCh----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKI--SSK----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~--v~~----~~Le~Ia~~tGa~ 333 (568)
+|.|...+++|||.....++...+.|.+.||.++-. .+. +.++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 467888999999998888888888899998766432 122 3488888888865
No 70
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=25.80 E-value=1.6e+02 Score=30.98 Aligned_cols=52 Identities=17% Similarity=0.193 Sum_probs=38.2
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeC---Ch----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS---SK----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v---~~----~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||....-++...+-|.+.||.++... +. +.++.+.+++|-.
T Consensus 112 ~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~e 170 (359)
T PRK09534 112 VEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGNC 170 (359)
T ss_pred HHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 5788899999999876555667788999999886543 22 3466777777764
No 71
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=25.16 E-value=3.2e+02 Score=21.02 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 108 GEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 108 ~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+.|++.+..+..+|+++.. .+...+...+..+++...+ ..+.+++..+++|+.+
T Consensus 14 ~~lf~~a~~~~~~~v~~~~---~~~~~v~~~~~~~N~~~~~------PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 14 CTLFRLARRLAYRGVDQEE---QFRQEVLSLAQAINSNFSP------PLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHHhCCCHhH---HHHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHHHHH
Confidence 3567777777788888888 3433333344444444332 3457888999988754
No 72
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=24.66 E-value=2.2e+02 Score=23.73 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.3
Q ss_pred cCCcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 288 ~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
.++++||+. +|.+.+...|.++||-++....
T Consensus 60 ~~~~vvi~~-~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYCA-AIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEEh-hcChhHHHHHHHcCCEEEEcCC
Confidence 488998885 8999999999999999997665
No 73
>TIGR02663 nifX nitrogen fixation protein NifX. Members of this family are NifX proteins encoded within operons for nitrogen fixation in a number of bacteria. NifX, NafY, and the C-terminal region of NifB all belong to the Pfam family pfam02579 and are involved in MoFe cofactor biosynthesis. NifX is a nitrogenase accessory protein with a role in expression of the MoFe cofactor.
Probab=24.60 E-value=2.4e+02 Score=24.42 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=35.2
Q ss_pred cCCcEEEecCCccHHHHHHHHhCCeEEEEeCC----hhHHHHHHHHhCCe
Q 008377 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISS----KFELRRFCRTTGAV 333 (568)
Q Consensus 288 ~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~----~~~Le~Ia~~tGa~ 333 (568)
.++++|||. +|.+.+...|.+.||-+++.-. .+-|+.+....-..
T Consensus 62 ~~c~vvi~~-~IG~~a~~~L~~~gI~~~~~~~~~~v~eal~~l~~~~~~~ 110 (119)
T TIGR02663 62 KDCAILYCL-AIGGPAAAKVVAAKIHPIKVNEPESISELLERLQKMLKGN 110 (119)
T ss_pred CCCcEEEEh-hcCccHHHHHHHcCCeeEecCCCccHHHHHHHHHHHHcCC
Confidence 589999885 8999999999999999997432 34477777766443
No 74
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=22.19 E-value=39 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=23.0
Q ss_pred CccccccCCCCCCCCCccccccccchhhhh
Q 008377 532 RDCLFTRCLNCSFSYKWLCSIFSRKLTILA 561 (568)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (568)
...+|..||.|| -.-|.||||.|-...+.
T Consensus 126 ~~~~f~~C~~Cg-kiYW~GsHw~~m~~~~~ 154 (165)
T COG1656 126 NYEEFYRCPKCG-KIYWKGSHWRRMVERIV 154 (165)
T ss_pred cccceeECCCCc-ccccCchHHHHHHHHHH
Confidence 446799999999 55699999998766443
No 75
>TIGR00129 fdhD_narQ formate dehydrogenase family accessory protein FdhD. FdhD in E. coli and NarQ in B. subtilis are required for the activity of formate dehydrogenase. The gene name in B. subtilis reflects the requirement of the neighboring gene narA for nitrate assimilation, for which NarQ is not required. In some species, the gene is associated not with a known formate dehydrogenase but with a related putative molybdopterin-binding oxidoreductase. A reasonable hypothesis is that this protein helps prepare a required cofactor for assembly into the holoenzyme.
Probab=22.09 E-value=1.3e+02 Score=29.68 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=35.9
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChh
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKF 321 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~ 321 (568)
++.+..+.|+++|++...-.+.+.++..+.||..+..+...
T Consensus 184 mv~Ka~~aGIpvlvS~sapT~lavelA~~~giTLigf~R~~ 224 (237)
T TIGR00129 184 MVQKAARCGVPIIASKSAPTDLAIEVAEESNITLIGFARNG 224 (237)
T ss_pred HHHHHHHcCCCEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 67788999999999999999999999999999988876543
No 76
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=22.02 E-value=4.1e+02 Score=23.06 Aligned_cols=51 Identities=25% Similarity=0.405 Sum_probs=42.9
Q ss_pred HHHHhcCCcEEEecCCc------cHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 283 KAVAESGAEVIVSGAAV------GEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 283 ~~l~~~~v~vVl~~~~I------~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
+.+...++.+|++.-++ ++.+..+|.+.++-++..+..+-+++.-..-|++
T Consensus 55 e~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~k 111 (121)
T COG1504 55 EELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKK 111 (121)
T ss_pred HHHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccc
Confidence 34456789999987665 7899999999999999999999999998888764
No 77
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=21.40 E-value=3.4e+02 Score=27.85 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCee
Q 008377 280 GLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVA 334 (568)
Q Consensus 280 ~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~i 334 (568)
+.++.+.+.++++|.+..+.++...+.+.+.|+.++-.+..-+.-+-+.-.|+..
T Consensus 78 ~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~ 132 (307)
T TIGR03151 78 ELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADA 132 (307)
T ss_pred HHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCE
Confidence 3567778899999988887777788889989998887665444333333345433
No 78
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.09 E-value=1.5e+02 Score=21.58 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHcCCChHHHHH
Q 008377 109 EILQGAEELIRMGLHPSEIIS 129 (568)
Q Consensus 109 ~Ll~~a~~li~~gi~p~~I~~ 129 (568)
+-|+-+.+|++.|++|..+..
T Consensus 22 etL~ici~L~e~GVnPeaLA~ 42 (48)
T PF12554_consen 22 ETLSICIELCENGVNPEALAA 42 (48)
T ss_pred HHHHHHHHHHHCCCCHHHHHH
Confidence 345556677788888876654
No 79
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.60 E-value=2e+02 Score=26.54 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=34.1
Q ss_pred HHHHHhcCCcEEEecCCccHH-HHHHHHhCCeEEEEeCC-------hhHHHHHHHHhC
Q 008377 282 IKAVAESGAEVIVSGAAVGEM-ALHFCERYKLMVLKISS-------KFELRRFCRTTG 331 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~-al~~l~~~~I~vv~~v~-------~~~Le~Ia~~tG 331 (568)
+|.|...+++|||......+. ....|.+.||.++--.. .++++.+..++|
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~~~~~~~~~~~i~~~g~~~g 119 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVLYVNEYPSPLGRAEWIKFAAAFYG 119 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEEEeCCCCChhhHHHHHHHHHHHcC
Confidence 477888999999987665553 77888999975433321 133666677776
No 80
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=20.38 E-value=1.7e+02 Score=29.45 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=35.8
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChh
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKF 321 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~ 321 (568)
++.+..+.|+++|++...-.+.+.++..+.||..+..+..+
T Consensus 213 mv~Ka~~aGipvivS~saPT~lAVelA~~~giTLiGf~R~~ 253 (263)
T PRK00724 213 MVQKAAMAGIPILVAVSAPTSLAVELAEELGLTLVGFARGG 253 (263)
T ss_pred HHHHHHHcCCcEEEEcccchHHHHHHHHHhCCEEEEEecCC
Confidence 67888999999999999999999999999999988776543
No 81
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=20.23 E-value=3.4e+02 Score=28.23 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=39.3
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeec
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii 335 (568)
+++.+.+.++++|++..+.+.. .+.|.+.||.++-.+..-..-+-+.-.|+..+
T Consensus 74 ~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 74 QLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 6777888999999998887766 47899999999877755433344555666444
Done!