Query 008377
Match_columns 568
No_of_seqs 145 out of 1426
Neff 7.9
Searched_HMMs 29240
Date Tue Mar 26 00:46:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008377.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008377hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9d_H T-complex protein 1 sub 100.0 3E-114 1E-118 950.3 39.5 527 1-529 1-549 (568)
2 3ruv_A Chaperonin, CPN; double 100.0 4E-111 1E-115 922.0 57.9 513 12-531 6-522 (543)
3 3iyg_A T-complex protein 1 sub 100.0 4E-110 1E-114 912.4 59.7 504 19-528 4-528 (529)
4 1q3q_A Thermosome alpha subuni 100.0 1E-110 4E-115 919.6 55.3 515 11-531 9-528 (548)
5 3ko1_A Chaperonin; 9-fold symm 100.0 4E-111 1E-115 921.8 49.8 515 10-530 15-535 (553)
6 1a6d_A Thermosome (alpha subun 100.0 1E-110 4E-115 919.1 51.3 512 11-530 8-524 (545)
7 1a6d_B Thermosome (beta subuni 100.0 2E-110 7E-115 917.2 52.8 513 11-529 7-524 (543)
8 3iyg_H T-complex protein 1 sub 100.0 2E-109 6E-114 903.6 59.0 504 15-528 1-514 (515)
9 3iyg_Q T-complex protein 1 sub 100.0 4E-109 2E-113 901.6 60.5 510 16-528 1-512 (512)
10 3iyg_G T-complex protein 1 sub 100.0 3E-109 1E-113 902.6 58.6 504 18-527 2-513 (515)
11 3p9d_G T-complex protein 1 sub 100.0 3E-111 9E-116 924.0 39.7 516 8-532 7-531 (550)
12 3iyg_B T-complex protein 1 sub 100.0 1E-108 4E-113 898.0 59.8 505 17-529 2-512 (513)
13 3iyg_D T-complex protein 1 sub 100.0 2E-108 6E-113 897.2 57.5 505 19-528 5-518 (518)
14 3p9d_A T-complex protein 1 sub 100.0 2E-108 7E-113 902.8 50.2 518 6-530 6-550 (559)
15 3iyg_E T-complex protein 1 sub 100.0 4E-107 1E-111 887.2 59.5 505 19-527 4-514 (515)
16 3iyg_Z T-complex protein 1 sub 100.0 1E-107 4E-112 889.4 55.3 497 22-527 7-516 (517)
17 3p9d_D T-complex protein 1 sub 100.0 1E-108 5E-113 899.0 41.9 510 14-528 8-528 (528)
18 3p9d_C T-complex protein 1 sub 100.0 7E-108 2E-112 898.5 42.3 514 10-529 4-587 (590)
19 3p9d_E T-complex protein 1 sub 100.0 6E-107 2E-111 891.7 48.8 505 21-529 41-559 (562)
20 3p9d_F T-complex protein 1 sub 100.0 1E-107 4E-112 895.8 37.6 513 13-529 5-538 (546)
21 3p9d_B T-complex protein 1 sub 100.0 1E-106 5E-111 884.8 33.8 510 12-531 4-521 (527)
22 3aq1_B Thermosome subunit; gro 100.0 2E-101 7E-106 838.1 42.7 471 54-529 1-477 (500)
23 1we3_A CPN60(groel); chaperoni 100.0 2.1E-92 7.2E-97 771.6 49.5 454 25-529 9-526 (543)
24 1kp8_A Groel protein; chaperon 100.0 8.8E-92 3E-96 765.5 47.9 453 25-530 9-525 (547)
25 1iok_A Chaperonin 60; chaperon 100.0 9.1E-93 3.1E-97 773.9 35.4 454 25-530 10-527 (545)
26 3rtk_A 60 kDa chaperonin 2; he 100.0 8.1E-92 2.8E-96 763.8 36.1 452 25-530 9-523 (546)
27 1gml_A T-complex protein 1 sub 100.0 2.3E-36 8E-41 283.8 18.0 171 214-385 1-174 (178)
28 1ass_A Thermosome; chaperonin, 100.0 8E-32 2.8E-36 248.0 13.5 151 220-370 1-153 (159)
29 3m6c_A 60 kDa chaperonin 1; ch 99.1 2.1E-09 7.2E-14 99.0 14.3 113 218-354 3-140 (194)
30 1srv_A Protein (groel (HSP60 c 99.0 1.2E-09 4E-14 96.1 11.2 110 222-355 1-135 (145)
31 3osx_A 60 kDa chaperonin; alph 99.0 8.7E-09 3E-13 95.1 15.7 110 221-354 13-147 (201)
32 1eo1_A Hypothetical protein MT 62.6 20 0.00067 30.1 7.1 52 281-333 57-108 (124)
33 1o13_A Probable NIFB protein; 61.7 16 0.00055 31.4 6.4 52 281-333 68-119 (136)
34 2yx6_A Hypothetical protein PH 61.3 17 0.00058 30.4 6.4 52 281-333 55-106 (121)
35 2wfb_A Putative uncharacterize 57.3 19 0.00064 30.0 6.0 51 281-332 59-110 (120)
36 1rdu_A Conserved hypothetical 50.2 25 0.00086 29.0 5.6 52 281-333 54-105 (116)
37 3v7e_A Ribosome-associated pro 48.1 27 0.00093 27.1 5.1 47 281-327 19-69 (82)
38 2re2_A Uncharacterized protein 47.4 36 0.0012 29.1 6.3 51 281-333 71-121 (136)
39 2lbw_A H/ACA ribonucleoprotein 40.6 58 0.002 27.3 6.3 47 280-326 27-78 (121)
40 2xzm_U Ribosomal protein L7AE 39.6 58 0.002 27.6 6.2 48 281-328 32-84 (126)
41 3v7q_A Probable ribosomal prot 36.6 75 0.0026 25.6 6.2 51 280-333 26-80 (101)
42 3on1_A BH2414 protein; structu 36.1 62 0.0021 26.0 5.6 50 280-332 25-78 (101)
43 2qtd_A Uncharacterized protein 35.2 77 0.0026 25.4 6.2 48 283-332 50-97 (105)
44 2ale_A SNU13, NHP2/L7AE family 32.0 51 0.0017 28.3 4.6 47 279-325 38-89 (134)
45 4a18_G RPL30; ribosome, eukary 29.5 1.2E+02 0.0043 24.3 6.5 52 278-332 27-83 (104)
46 3cpq_A 50S ribosomal protein L 27.9 1.3E+02 0.0045 24.5 6.4 48 279-326 27-79 (110)
47 1xbi_A 50S ribosomal protein L 26.7 87 0.003 26.1 5.1 47 281-327 37-88 (120)
48 3iz5_f 60S ribosomal protein L 26.2 1.2E+02 0.004 25.0 5.8 50 278-327 31-85 (112)
49 3psh_A Protein HI_1472; substr 25.8 95 0.0032 30.2 6.1 52 282-333 77-154 (326)
50 1vq8_F 50S ribosomal protein L 25.0 1.2E+02 0.0041 25.2 5.7 49 279-327 35-88 (120)
51 2aif_A Ribosomal protein L7A; 24.7 96 0.0033 26.5 5.1 48 279-326 47-99 (135)
52 3u5e_c L32, RP73, YL38, 60S ri 24.3 1.4E+02 0.0048 24.1 5.9 51 279-332 28-83 (105)
53 2fc3_A 50S ribosomal protein L 23.7 1.3E+02 0.0043 25.2 5.6 47 279-325 34-85 (124)
54 2r7a_A Bacterial heme binding 22.5 1.4E+02 0.0049 27.6 6.5 52 282-333 52-112 (256)
55 2r79_A Periplasmic binding pro 22.4 1.5E+02 0.005 28.2 6.7 52 282-333 52-111 (283)
56 3o85_A Ribosomal protein L7AE; 21.5 1.4E+02 0.0048 24.9 5.5 48 279-326 37-89 (122)
57 2q8p_A Iron-regulated surface 20.7 92 0.0032 29.1 4.7 52 282-333 53-110 (260)
58 2etv_A Iron(III) ABC transport 20.4 1.2E+02 0.0041 30.0 5.6 52 282-333 89-151 (346)
59 3md9_A Hemin-binding periplasm 20.2 1.9E+02 0.0064 26.8 6.8 52 282-333 52-111 (255)
No 1
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h*
Probab=100.00 E-value=3.1e-114 Score=950.30 Aligned_cols=527 Identities=43% Similarity=0.735 Sum_probs=490.4
Q ss_pred CCCCCCCcccccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh
Q 008377 1 MGFSMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP 80 (568)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP 80 (568)
|+|++|+.+...+|++++++++|.++++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||
T Consensus 1 ~~~~~~~~~~~~~l~~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP 80 (568)
T 3p9d_H 1 MSLRLPQNPNAGLFKQGYNSYSNADGQIIKSIAAIRELHQMCLTSMGPCGRNKIIVNHLGKIIITNDAATMLRELDIVHP 80 (568)
T ss_dssp ----CCCCCCCSSCCSSCCBCCCHHHHHHHHHHHHHHHHHHHHTTSSSSSCEEEEECTTSCEEEESCHHHHTTTCCCCCH
T ss_pred CCCCCCCcchhhhhhcCccccccHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCH
Confidence 88999999999999999999999778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHH
Q 008377 81 AAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEE 160 (568)
Q Consensus 81 ~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~ 160 (568)
+|+|++++|++|++++||||||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+... |..+++.
T Consensus 81 ~Akll~e~a~~qd~e~GDGTTtvvvLa~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~e~L~~~a~~v~~--~~~~~~~ 158 (568)
T 3p9d_H 81 AVKVLVMATEQQKIDMGDGTNLVMILAGELLNVSEKLISMGLSAVEIIQGYNMARKFTLKELDEMVVGEIT--DKNDKNE 158 (568)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCCSCCC--CCCTTHH
T ss_pred HHHHHHHHHHhhhceeCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCC--CCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999886432 5568899
Q ss_pred HHHHHHHhhhccccCcccchHHHHHHHHHHhcCC-----CCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCccc
Q 008377 161 VIYRMKAAVASKQFGQEEILCPLIADACIQVCPK-----NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKN 235 (568)
Q Consensus 161 l~~i~~t~l~sk~~~~~~~ls~lv~~a~~~~~~~-----~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~ 235 (568)
|.++++|+++||+.+++++|++++++|+.+++++ +...||+++|+|++++||+++||++++|++|++++.+||++
T Consensus 159 l~~va~tsl~sK~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~dl~~I~I~k~~Ggs~~dS~lv~G~v~dk~~~~m~~~ 238 (568)
T 3p9d_H 159 LLKMIKPVISSKKYGSEDILSELVSEAVSHVLPVAQQAGEIPYFNVDSIRVVKIMGGSLSNSTVIKGMVFNREPEGHVKS 238 (568)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHTTSCC---------CCCGGGCEEEEEESSCGGGCEEESSCCBSSCBSSGGGS
T ss_pred HHHHHHHHhhccCcchHHHHHHHHHHHHHHHhhccccccCCcccccceEEEEEccCCCcchheeeccEEEeecccCCcEE
Confidence 9999999999998766699999999999999764 33458999999999999999999999999999999999999
Q ss_pred cc---CceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCe
Q 008377 236 ME---KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKL 312 (568)
Q Consensus 236 i~---n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I 312 (568)
++ ||||++++++|++++++.++++.+++++++.++.++|++++++++++|++.|+||||++++|++.+++||.++||
T Consensus 239 i~~~~n~kIlll~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~~al~~L~~~gI 318 (568)
T 3p9d_H 239 LSEDKKHKVAVFTCPLDIANTETKGTVLLHNAQEMLDFSKGEEKQIDAMMKEIADMGVECIVAGAGVGELALHYLNRYGI 318 (568)
T ss_dssp CCCCSSCEEEEECSCSSSCCCSSSCEEECCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSCCCHHHHHHHHHHTC
T ss_pred EecCCcceEEEEccCccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEECCCcChHHHHHHHHCCe
Confidence 99 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC-CCceEEEEEcCCChhHHHHHH
Q 008377 313 MVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG-GNSVSTVVLRGSTDSILDDLE 391 (568)
Q Consensus 313 ~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~-~~~~~TIllrG~t~~~l~e~~ 391 (568)
++++++++.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+. +++.+||+|||+|+.+++|.|
T Consensus 319 ~av~~v~~~~leria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~l~~~~~TIllrG~t~~~l~E~e 398 (568)
T 3p9d_H 319 LVLKVPSKFELRRLCRVCGATPLPRLGAPTPEELGLVETVKTMEIGGDRVTVFKQEQGEISRTSTIILRGATQNNLDDIE 398 (568)
T ss_dssp EEECCCCHHHHHHHHHHHSCCCCSSSSCCCGGGCEECSCCCCCEETTEECBCCCCCSSSCCSSCEEEEEESCHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHhCCEEEeccccCCHHHCCcceEEEEEEecCceEEEEecCCCCCCCeEEEEECCCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999972 388999999999999999999
Q ss_pred HHHhhHHHHHHHHHh--CCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHH
Q 008377 392 RAVDDGVNTYKAMCR--DSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSL 469 (568)
Q Consensus 392 r~i~dal~~l~~~~~--~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L 469 (568)
|+++|||+++|++++ ++++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|
T Consensus 399 r~i~DAL~vvr~av~~~d~~iVpGGGa~E~~ls~~L~~~a~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l 478 (568)
T 3p9d_H 399 RAIDDGVAAVKGLMKPSGGKLLPGAGATEIELISRITKYGERTPGLLQLAIKQFAVAFEVVPRTLAETAGLDVNEVLPNL 478 (568)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCTTTHHHHHHHHHHHHHHHTCCSTHHHHHHHHHHGGGHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCeEEeCCcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC--------CCCceeEeccCCc---ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 470 YAEHAS--------GKTKVGIDLENGV---CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 470 ~~~~~~--------~~~~~Gid~~~~~---~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
++.|.+ ++.++|||+.+|+ +.||++.|||||+.||+++|+.|+|+|++|||||++|..+|
T Consensus 479 ~~~h~~~~~~~~~~~~~~~G~d~~~g~~~~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~ 549 (568)
T 3p9d_H 479 YAAHNVTEPGAVKTDHLYKGVDIDGESDEGVKDIREENIYDMLATKKFAINVATEAATTVLSIDQIIMAKK 549 (568)
T ss_dssp HHCCCCSSCCCCCCTTSSSCCCHHHHTCCCCHHHHHHHHHHHHHHHHHHHHCCEECBCCC-----------
T ss_pred HHHhhhhcccccccCCCceeEcccCCCcccccChHHccCEEcHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Confidence 999865 5568999999997 99999999999999999999999999999999999999876
No 2
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A
Probab=100.00 E-value=4e-111 Score=922.05 Aligned_cols=513 Identities=29% Similarity=0.511 Sum_probs=491.8
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHH
Q 008377 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKA 91 (568)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~ 91 (568)
.+|+++.+..+|. +++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++
T Consensus 6 ~~l~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~ 84 (543)
T 3ruv_A 6 GVLPENMKRYMGR-DAQRMNILAGRIIAETVRSTLGPKGMDKMLVDDLGDVVVTNDGVTILREMSVEHPAAKMLIEVAKT 84 (543)
T ss_dssp CSSCSSEEEEETH-HHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTSCEEEECCHHHHHHHSCCCCHHHHHHHHHHHH
T ss_pred eeecCCcchhccH-HHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHH
Confidence 7789999998895 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhc
Q 008377 92 QQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVAS 171 (568)
Q Consensus 92 ~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~s 171 (568)
|++++||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ ++..|++.|.++++|+++|
T Consensus 85 qd~e~GDGTTtvvVLA~~Ll~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~~~L~~va~tsl~s 160 (543)
T 3ruv_A 85 QEKEVGDGTTTAVVVAGELLRKAEELLDQNVHPTIVVKGYQAAAQKAQELLKTIACE----VGAQDKEILTKIAMTSITG 160 (543)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTCHHHHHHHHHHHHHH
T ss_pred HHhhhCCCcccHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999886 2556899999999999999
Q ss_pred ccc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeecc
Q 008377 172 KQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGV 248 (568)
Q Consensus 172 k~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~L 248 (568)
|+. .++++|++++++|+.++++++ ..+|+++|+|++..|+++.||++++|++|++++. .||+.++||||++++++|
T Consensus 161 K~~~~~~~~i~~livdAv~~V~~~~-g~~dl~~I~V~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~~n~kIll~~~~L 239 (543)
T 3ruv_A 161 KGAEKAKEKLAEIIVEAVSAVVDDE-GKVDKDLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCAI 239 (543)
T ss_dssp TCGGGCCHHHHHHHHHHHHHHCCTT-SCCCGGGEEEEEEECSCGGGCEEESSEEESCCCSCTTSCSEEEEEEEEEESSCB
T ss_pred cccchhHHHHHHHHHHHHHHhhccC-CCcccceEEEEEcCCCCcccceeecceEEeccccCccccccccCcEEEEEcccc
Confidence 974 568999999999999998761 2389999999999999999999999999999984 589999999999999999
Q ss_pred ccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHH
Q 008377 249 DTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCR 328 (568)
Q Consensus 249 e~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~ 328 (568)
++++++.++++.+++++++.++++.|+++++.++++|++.|+||||++++|++.+++||.++||++++++++.+|+|||+
T Consensus 240 e~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~ve~I~~~g~~vvi~~~~I~~~al~~L~~~gI~~v~~v~k~~le~ia~ 319 (543)
T 3ruv_A 240 EIKETETDAEIRITDPAKLMEFIEQEEKMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIVAARRVKKSDMEKLAK 319 (543)
T ss_dssp SCCCCSSCCCEEECSTTHHHHHHHHHHHHHHHHHHHHHHHTCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHH
T ss_pred cccccccCceeEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHcCcEEEeeCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCC
Q 008377 329 TTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (568)
Q Consensus 329 ~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~ 408 (568)
+|||++++++++++++++|+|+.|+++++|+++|++|++|++ +..+||+|||+|+.+++|.||+++|||+++|+++++|
T Consensus 320 ~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~av~~g 398 (543)
T 3ruv_A 320 ATGANVIAAIAALSAQDLGDAGLVEERKISGDSMIFVEECKH-PKAVTMLIRGTTEHVIEEVARAVDDAVGVVGCTIEDG 398 (543)
T ss_dssp HHCCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCceecccccCCHHHCCcccEEEEEEeCCceEEEEECCCC-CceeEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999984 8899999999999999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHh-CCCCceeEeccCC
Q 008377 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHA-SGKTKVGIDLENG 487 (568)
Q Consensus 409 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~-~~~~~~Gid~~~~ 487 (568)
++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|. +++.++|||..+|
T Consensus 399 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g 478 (543)
T 3ruv_A 399 RIVSGGGSTEVELSMKLREYAEGISGREQLAVRAFADALEVIPRTLAENAGLDAIEILVKVRAAHASNGNKCAGLNVFTG 478 (543)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHHHHHHTTTCCTTEEECTTTC
T ss_pred CeecCCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCceeeeeCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999997 6678899999999
Q ss_pred cccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccC
Q 008377 488 VCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIIN 531 (568)
Q Consensus 488 ~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~ 531 (568)
++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.+
T Consensus 479 ~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~ 522 (543)
T 3ruv_A 479 AVEDMCENGVVEPLRVKTQAIQSAAESTEMLLRIDDVIAAEKLR 522 (543)
T ss_dssp SEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEEEC---
T ss_pred ccccHHHcCCEecHHHHHHHHHHHHHHHHHHHhHHhheecCccC
Confidence 99999999999999999999999999999999999999987743
No 3
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.9e-110 Score=912.42 Aligned_cols=504 Identities=28% Similarity=0.472 Sum_probs=479.6
Q ss_pred ccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccC
Q 008377 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (568)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (568)
++.+| .+++.+|+.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~v~ttlGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~e~GD 82 (529)
T 3iyg_A 4 DRSTG-EAIRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGD 82 (529)
T ss_pred chhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCChHHHHHHHHHHHhhhhhCC
Confidence 44567 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHHHHHHhhhcccc-Cc
Q 008377 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQ 176 (568)
Q Consensus 99 Gttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~ 176 (568)
||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++ ++.+ ++..|++.|.++++|+++||+. ++
T Consensus 83 GTTtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~----v~~~~~e~l~~va~tsl~sK~~~~~ 158 (529)
T 3iyg_A 83 GTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIIN----TDELGRDCLINAAKTSMSSKVIGIN 158 (529)
T ss_pred ChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCCCHHHHHHHHHHHhccCccccc
Confidence 9999999999999999999999999999999999999999999998 8775 2455789999999999999974 56
Q ss_pred ccchHHHHHHHHHHhcC---CCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccc
Q 008377 177 EEILCPLIADACIQVCP---KNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 177 ~~~ls~lv~~a~~~~~~---~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~ 251 (568)
+++|++++++|+.++++ ++...||+++|+|+++.||++.||++++|++|++++. .||+.++||||++++++|+++
T Consensus 159 ~~~i~~livdAv~~V~~~~~~g~~~~dv~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~ 238 (529)
T 3iyg_A 159 GDFFANLVVDAVLAIKYTDIRGQPRYPVNSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKT 238 (529)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcccccceEEEEEecCCCccceEEEeeeEEecCcccccCCcccCCceEEEecCCcccc
Confidence 89999999999999973 3334688899999999999999999999999999873 689999999999999999999
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhC
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tG 331 (568)
+++.++++.+++++++..+.++|+++++.++++|++.|+||||++++|++.+++||.++||++++++++++|+|||++||
T Consensus 239 k~e~~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tG 318 (529)
T 3iyg_A 239 KMKLGVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASG 318 (529)
T ss_pred cccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCceeccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccCCCCC------CCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 332 AVAMLKLCQPN------PDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 332 a~ii~~~~~l~------~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
|++++++++++ ++++|+|+.|+++++|+++|++|++|+. ++.+||+|||+|+.+++|.||+++||++++|+++
T Consensus 319 a~iv~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~v~r~~v 397 (529)
T 3iyg_A 319 ATVLSTLANLEGEETFEASMLGQAEEVVQERICDDELILIKNTKA-RTSASVILRGANDFMCDEMERSLHDALCVVKRVL 397 (529)
T ss_pred CeeecchhcccchhccChhhCccceEEEEEEeCCceEEEEEcCCC-CceEEEEECCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987764 5789999999999999999999999984 8899999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCC--------
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-------- 477 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~-------- 477 (568)
++|++|||||++|+++|.+|++++.+.++++|+++++||+|||.||++|++|||+|+.+++.+|++.|.+++
T Consensus 398 ~~~~iVpGGGa~E~~ls~~L~~~~~~~~g~eq~~i~~fa~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~~~~~ 477 (529)
T 3iyg_A 398 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNL 477 (529)
T ss_pred hCCeEEeCCcHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred CceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 478 TKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 478 ~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
.++|+|+.+|++.||++.|||||+.+|+++|++|+|+|++|||||++|...
T Consensus 478 ~~~G~d~~~g~~~d~~~~gV~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (529)
T 3iyg_A 478 KWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIKLH 528 (529)
T ss_pred ceeeeeCCCCCccChhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhcCC
Confidence 679999999999999999999999999999999999999999999999764
No 4
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=100.00 E-value=1.1e-110 Score=919.59 Aligned_cols=515 Identities=32% Similarity=0.561 Sum_probs=492.2
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
..+++++.+..+| .+++..|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 9 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 87 (548)
T 1q3q_A 9 VVILPEGTQRYVG-RDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVVTNDCATILDKIDLQHPAAKMMVEVAK 87 (548)
T ss_dssp CCCSCTTCEEEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECTTCCEEEESCHHHHHHHSCCCSHHHHHHHHHHH
T ss_pred cccccCCcceech-HHHHHHHHHHHHHHHHHHHhccCCCCceEEEEcCCCCeEEECCHHHHHHHhhccchHHHHHHHHHH
Confidence 4568899888777 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+|++++||||||++||+++||+++.+++++|+||+.|++||+.|++.+++.|++++++ ++..|++.|.++++|+++
T Consensus 88 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~~~l~~va~tsl~ 163 (548)
T 1q3q_A 88 TQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIR----VDPDDEETLLKIAATSIT 163 (548)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTCHHHHHHHHHHHSC
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999886 245579999999999999
Q ss_pred cccc-CcccchHHHHHHHHHHhcCC--CCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEe
Q 008377 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (568)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~ 245 (568)
||+. +++++|++++++|+.+++++ +..++|+++|+|++++|++++||++++|++|++++. .||++++||||++++
T Consensus 164 sKi~~~~~~~i~~livdAv~~V~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 243 (548)
T 1q3q_A 164 GKNAESHKELLAKLAVEAVKQVAEKKDGKYVVDLDNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALIN 243 (548)
T ss_dssp SSTTGGGHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEEC
T ss_pred ccccccchHHHHHHHHHHHHHhccccCCCccccCCeEEEEEecCCCccceEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9975 56899999999999999865 224588899999999999999999999999999985 589999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++|++++++.++++.+++++++++++++|+++++.++++|++.|+||||++++|++.+++||.++||++++++++++|+|
T Consensus 244 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 323 (548)
T 1q3q_A 244 EALEVKKTETDAKINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEK 323 (548)
T ss_dssp SCBSCCCCSSCCCEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cCcCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCEEEEcCCcCHHHHHHHHHCCcEEEccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|+++
T Consensus 324 ia~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~ 402 (548)
T 1q3q_A 324 LAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGENMIFVEGCKN-PKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM 402 (548)
T ss_dssp HHHHHCCCCBSSGGGCCGGGCEEESEEEEEEETTEEEEEEECCSS-CSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeEecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEecc
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~ 485 (568)
++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++++|++.|.+++.++|+|..
T Consensus 403 ~~~~ivpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 482 (548)
T 1q3q_A 403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKNRGLGIGIDVF 482 (548)
T ss_dssp HSCEEEECTTHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCTTEEEETT
T ss_pred HCCCcccCCcHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceeCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999766678999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccC
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIIN 531 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~ 531 (568)
+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.+
T Consensus 483 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~~~~~ 528 (548)
T 1q3q_A 483 EGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAAKATK 528 (548)
T ss_dssp TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHTCCEEEECCC--
T ss_pred CCCccchhhcCCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 9999999999999999999999999999999999999999987744
No 5
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=100.00 E-value=4.2e-111 Score=921.81 Aligned_cols=515 Identities=29% Similarity=0.512 Sum_probs=481.5
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHH
Q 008377 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (568)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~ 89 (568)
...+|+++.+..+|. +++..|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++
T Consensus 15 ~~~~l~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a 93 (553)
T 3ko1_A 15 PVIILKEGSSRTYGK-EAVRANIAAVKAVEEALKSTYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIA 93 (553)
T ss_dssp -------------CH-HHHHHHHHHHHHHHHHHGGGCSTTCCEEEEECTTSCEEEECCHHHHHHSSCCCSHHHHHHHHHH
T ss_pred eEEEEecCcccchhH-HHHHHHHHHHHHHHHHHHhccCCcchhhHHHhhccceEEecCccchhhhhhccChhHHHHHHHh
Confidence 456789999998895 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhh
Q 008377 90 KAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAV 169 (568)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l 169 (568)
++|++++||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++ ++..|++.|.++++|++
T Consensus 94 ~~qd~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~d~e~L~~vA~tsl 169 (553)
T 3ko1_A 94 KGQDEETADGTKTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQT----VSINDTDLLRKIAMTSL 169 (553)
T ss_dssp HTCSSSSSTTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEE----CCTTCHHHHHHHHHHHH
T ss_pred hCCcccccCCceeEEEehHHHHHhHHHHHhcCCCceEEehhhhHHHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999886 25568999999999999
Q ss_pred hcccc-CcccchHHHHHHHHHHhcCC--CCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEE
Q 008377 170 ASKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVF 244 (568)
Q Consensus 170 ~sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll 244 (568)
+||+. .++++|++++++|+.+++++ +...+|+++|+|+++.||++.||++++|++|++++. .||+.++||||+++
T Consensus 170 ~sK~~~~~~~~i~~livdAv~~V~~~~~G~~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~ 249 (553)
T 3ko1_A 170 SSKAVAGAREYIADIVVKAVTQVAELRGDKWYVDLDNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALI 249 (553)
T ss_dssp TTSSCCTTHHHHHHHHHHHHHHHCCCTTSSCCCCGGGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEE
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhcCCceEEechhHHHHHHhCCccccceeeEEEEecccccCCCCccccccceEEEe
Confidence 99974 56899999999999999875 323589999999999999999999999999999984 58999999999999
Q ss_pred eeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHH
Q 008377 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (568)
Q Consensus 245 ~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le 324 (568)
+++|++++++.++++.+++++++.++++.|+++++.++++|.+.|+||||++++|++.+++||.++||++++++++.+|+
T Consensus 250 d~~Le~~k~e~~~~v~Iss~~~l~~~~~~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~le 329 (553)
T 3ko1_A 250 DASLEVEKPELDAEIRINDPTQMQKFLDEEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLE 329 (553)
T ss_dssp CSCBSCCCCTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHH
T ss_pred cCcccccCcccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEeccChHHHHHHHHHhcchhhhhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHH
Q 008377 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (568)
Q Consensus 325 ~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~ 404 (568)
|||++|||++++++++++++++|+|+.|+++++|+++|++|++|++ +..+||+|||+|+.+++|.||+++|||+++|++
T Consensus 330 ria~~tGa~ivs~l~~l~~~~LG~a~~v~~~~ig~d~~~~i~g~~~-~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a 408 (553)
T 3ko1_A 330 KLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKN-PKSISILIRGGLERLVDETERALRDALGTVADV 408 (553)
T ss_dssp HHHTTTTCCEESCGGGCCSSSSEECSEEECCCCSSSCCEEEESCSS-SSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCeeecccccCChhhcchHHHHHHhhcCcceEEEeccCCC-CceEEEeeeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 899999999999999999999999999999999
Q ss_pred HhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCC-CceeEe
Q 008377 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGK-TKVGID 483 (568)
Q Consensus 405 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~-~~~Gid 483 (568)
+++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++ .++|+|
T Consensus 409 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d 488 (553)
T 3ko1_A 409 IKDGRAIAGGGAVEIEIAKKLRKYAPQVGGKEQLAVEAYANALESLVSILIENAGFDPIDLLMKLRSTHENENNKWYGID 488 (553)
T ss_dssp HHHCEEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCSGGGTTEEEE
T ss_pred hhcCceecCCceeEeHHHHHHHHhccccCChhHhHHHHHHHHHHhHHHHHHHhcCCCHHHHHHHHHHHhhCcCCceEeEE
Confidence 9999999999999999999999999889999999999999999999999999999999999999999998766 789999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCcc
Q 008377 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLII 530 (568)
Q Consensus 484 ~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~ 530 (568)
+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.
T Consensus 489 ~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~~ 535 (553)
T 3ko1_A 489 LYAGQPVDMWQKGVIEPALVKMNAIKAATEAATLVLRIDDVVSAGKK 535 (553)
T ss_dssp TTTTEEEESGGGSCEEETTHHHHHHHHHHHHHHHHHHEEEECCC---
T ss_pred eecCCchHHHHhCccchhhhhhhhhhhcchhheEEEehHHHHHhhhh
Confidence 99999999999999999999999999999999999999999988763
No 6
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=100.00 E-value=1e-110 Score=919.10 Aligned_cols=512 Identities=29% Similarity=0.517 Sum_probs=481.2
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
..+++++.+..+| .+++..|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 8 ~~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 86 (545)
T 1a6d_A 8 ILVLKEGTQREQG-KNAQRNNIEAAKAIADAVRTTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSK 86 (545)
T ss_dssp ---------CEEH-HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEEECSSSCEEEECCHHHHHHHSCCCSHHHHHHHGGGG
T ss_pred ccccCCcchhhch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCcHHHHHHhhhccchHHHHHHHHHH
Confidence 4568999888778 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+|++++||||||++||+++||+++.+++++|+||+.|++||+.|++.++++|++++.+ + .|++.|.++++|+++
T Consensus 87 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~-----~-~~~~~l~~va~tsl~ 160 (545)
T 1a6d_A 87 AQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEK-----S-TDDATLRKIALTALS 160 (545)
T ss_dssp CTTTCSTTHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEE-----C-CCHHHHHHHHHHHTT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC-----C-CCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999875 3 478999999999999
Q ss_pred cccc-CcccchHHHHHHHHHHhcCCC--CCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEe
Q 008377 171 SKQF-GQEEILCPLIADACIQVCPKN--PANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (568)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~~--~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~ 245 (568)
||+. +++++|++++++|+.++++++ ..++|+++|+|++++|++++||++++|++|++++. .||++++||||++++
T Consensus 161 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 240 (545)
T 1a6d_A 161 GKNTGLSNDFLADLVVKAVNAVAEVRDGKTIVDTANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALID 240 (545)
T ss_dssp TSSCCSTHHHHHHHHHHHHHHHCEESSSSEECCGGGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEEC
T ss_pred cccccccHHHHHHHHHHHHHHHhcccCCCcccccceEEEEEecCCCceeeEEEeeEEEeccCCCCCCcceecCCEEEEEe
Confidence 9975 568999999999999998652 23588899999999999999999999999999985 589999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++|++++++.++++.+++++++++++++|+++++.++++|.+.|+||||++++|++.+++||.++||++++++++++|+|
T Consensus 241 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ 320 (545)
T 1a6d_A 241 SALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEK 320 (545)
T ss_dssp SCBSCCCCSSCCEEEECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHH
T ss_pred cCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
||++|||++++++++++++++|+|+.|++.++|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|+++
T Consensus 321 ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~ 399 (545)
T 1a6d_A 321 LAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN-PKAVSILIRGGTDHVVSEVERALNDAIRVVAITK 399 (545)
T ss_dssp HHHHHCCCEESSGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESC-SSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCeeecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEecc
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~ 485 (568)
++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|..
T Consensus 400 ~~g~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 479 (545)
T 1a6d_A 400 EDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKADDEKGRISVGVDLD 479 (545)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTHHHHHHHHHHTSCHHHHHHHHHHHHHTTCTTEEEETT
T ss_pred hCCCEEeCcCHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCcceecc
Confidence 99999999999999999999999988999999999999999999999999999999999999999999877778999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCcc
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLII 530 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~ 530 (568)
+|++.||.+.|||||+.||+++|+.|+|+|++|||||++|..+|.
T Consensus 480 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~~ 524 (545)
T 1a6d_A 480 NNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIASKKS 524 (545)
T ss_dssp TTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHTCCEEC-----
T ss_pred cCccccchhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999999999999999999999999999999998763
No 7
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=100.00 E-value=2.1e-110 Score=917.24 Aligned_cols=513 Identities=28% Similarity=0.489 Sum_probs=480.2
Q ss_pred ccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 11 QSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
..+++++.+..+|. +++..|+.||..|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++++
T Consensus 7 ~~~l~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGP~G~~kml~~~~g~~~iTnDG~tIlk~i~v~hP~Akll~e~a~ 85 (543)
T 1a6d_B 7 IFILKEGTKRESGK-DAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSK 85 (543)
T ss_dssp -------------C-HHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHT
T ss_pred hhhcCCcchhhhhH-HHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHhhccchHHHHHHHHHH
Confidence 45688898888884 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhh
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVA 170 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~ 170 (568)
+|++++||||||++||+++||+++.+++++|+||+.|++||+.|++.++++|++++++ ++..|++.|.++++|+++
T Consensus 86 ~qd~e~GDGTTtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~----v~~~~~~~l~~va~tsl~ 161 (543)
T 1a6d_B 86 TQDSFVGDGTTTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTK----IGADEKALLLKMAQTSLN 161 (543)
T ss_dssp CTTCCCTTHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEE----CCTTHHHHHHHHHHHHHT
T ss_pred hcCCEECCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999886 244568999999999999
Q ss_pred cccc-CcccchHHHHHHHHHHhcCC--CCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEe
Q 008377 171 SKQF-GQEEILCPLIADACIQVCPK--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFA 245 (568)
Q Consensus 171 sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~ 245 (568)
||+. +++++|++++++|+.+++++ +..++|+++|+|++++||+++||++++|++|++++. .||++++||||++++
T Consensus 162 sKi~~~~~~~i~~livdAv~~v~~~~~g~~~~d~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~ 241 (543)
T 1a6d_B 162 SKSASVAKDKLAEISYEAVKSVAELRDGKYYVDFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLD 241 (543)
T ss_dssp TSGGGGGHHHHHHHHHHHHHHHEEECSSSEEECGGGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEES
T ss_pred cccccccHHHHHHHHHHHHHHhcccccCCcccccceEEEEEecCCCccceeEEccEEEecCCCCCCCcceecCCeEEEEe
Confidence 9975 56899999999999999865 323688999999999999999999999999999985 589999999999999
Q ss_pred eccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHH
Q 008377 246 GGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 246 ~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++|++++++.++++.+++++++++++++|+++++.++++|.+.|+||||++++|++.+++||.++||++++++++++|+|
T Consensus 242 ~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ 321 (543)
T 1a6d_B 242 APLEIKKPEFDTNLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDK 321 (543)
T ss_dssp SCBSCCCCSSEEEECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHH
T ss_pred cccccccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCHHHHHHHHHCCeeEeccCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHH
Q 008377 326 FCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMC 405 (568)
Q Consensus 326 Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~ 405 (568)
||++|||++++++++++++++|+|+.|+++++|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|+++
T Consensus 322 ia~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~ 400 (543)
T 1a6d_B 322 LAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMTFVTGCKN-PKAVSILVRGETEHVVDEMERSITDSLHVVASAL 400 (543)
T ss_dssp HHHHHTCCEESCGGGCCGGGCEEEEEEEEEEETTEEEEEEEEESS-SSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCceecccccCCHHHCCCceEEEEEEecCceEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 8999999999999999999999999999999999
Q ss_pred hCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEecc
Q 008377 406 RDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLE 485 (568)
Q Consensus 406 ~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~ 485 (568)
++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|..
T Consensus 401 ~~~~ivpGGGa~e~~~s~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~ 480 (543)
T 1a6d_B 401 EDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKGNKTYGINVF 480 (543)
T ss_dssp HHCEEEETTTHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHTTCTTEEEETT
T ss_pred HCCCccCCccHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhCCCCCeeEeCC
Confidence 99999999999999999999999988999999999999999999999999999999999999999999877778999999
Q ss_pred CCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 486 NGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 486 ~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
+|++.||.+.|||||+.+|+++|+.|+|+|++|||||++|...|
T Consensus 481 ~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~id~iI~~~~ 524 (543)
T 1a6d_B 481 TGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIATKS 524 (543)
T ss_dssp TTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHEEEEEC---
T ss_pred CCcccchhhcCceecHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999999876
No 8
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.8e-109 Score=903.63 Aligned_cols=504 Identities=26% Similarity=0.448 Sum_probs=482.5
Q ss_pred ccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhh
Q 008377 15 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQE 94 (568)
Q Consensus 15 ~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~ 94 (568)
++++++++|. +++.+||.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++
T Consensus 1 ~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~ 79 (515)
T 3iyg_H 1 KEGTDSSQGI-PQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDA 79 (515)
T ss_pred CCCccccCcH-HHHHHHHHHHHHHHHHHhhCcCCCCCeEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHHHHHHhhc
Confidence 4677788884 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC----HHHHHHHHHHhhh
Q 008377 95 EIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN----TEEVIYRMKAAVA 170 (568)
Q Consensus 95 ~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~----~~~l~~i~~t~l~ 170 (568)
++||||||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|++++++. +..| ++.|.++++|+++
T Consensus 80 ~~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v----~~~~~~~~~~~L~~va~tsl~ 155 (515)
T 3iyg_H 80 EVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTV----KKEDKVEQRKLLEKCAMTALS 155 (515)
T ss_pred eeCcchhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccc----ccCChHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999998862 3334 6788999999999
Q ss_pred ccc-cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-----CCcccccCceEEEE
Q 008377 171 SKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEKAKVAVF 244 (568)
Q Consensus 171 sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~i~n~kIlll 244 (568)
||+ +.++++|++++++|+.+++. .+|++.|+|+++.||+..||++++|++|++++. ++|+.++||||+++
T Consensus 156 sK~~s~~~~~i~~livdAv~~V~~----~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~p~~~~~p~~~en~kIll~ 231 (515)
T 3iyg_H 156 SKLISQQKAFFAKMVVDAVMMLDD----LLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALL 231 (515)
T ss_pred CCcccccHHHHHHHHHHHHHHhcc----cCCcceEEEEecCCCCccceEEEeeeEEecCccCcccccCCccccccEEEEE
Confidence 996 45789999999999999963 488889999999999999999999999999874 35889999999999
Q ss_pred eeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHH
Q 008377 245 AGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELR 324 (568)
Q Consensus 245 ~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le 324 (568)
+++|++++++.++++.+++++++.++++.|+++++.+++++.+.|++|||++++|+|.+++||+++||++++++++.+|+
T Consensus 232 ~~~Le~~k~e~~~~v~is~~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~dla~~~l~~~gI~~v~~~~k~~le 311 (515)
T 3iyg_H 232 NVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMFCAGRVPEEDLK 311 (515)
T ss_pred cccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCcccHHHHHHHHHcCCcccccccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHH
Q 008377 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAM 404 (568)
Q Consensus 325 ~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~ 404 (568)
|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++ +..+||+|||+|+.+++|.||+++||++++|++
T Consensus 312 ria~~tGa~ii~~l~~~~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~t~~~l~E~kr~i~DAl~~~r~~ 390 (515)
T 3iyg_H 312 RTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPK-AKTCTIILRGGAEQFMEETERSLHDAIMIVRRA 390 (515)
T ss_pred HHHHHhCCEEeeccccCCHHHCCcccEEEEEEEcCeEEEEEecCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999984 889999999999999999999999999999999
Q ss_pred HhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEec
Q 008377 405 CRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDL 484 (568)
Q Consensus 405 ~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~ 484 (568)
++++++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+
T Consensus 391 v~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~ 470 (515)
T 3iyg_H 391 IKNDSVVAGGGAIEMELSKYLRDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHAQGGMWYGVDI 470 (515)
T ss_pred hhCCCeecCCcHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhhccCCCeeEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777899999
Q ss_pred cCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 485 ENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 485 ~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...
T Consensus 471 ~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~ 514 (515)
T 3iyg_H 471 NTEDIADNFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNP 514 (515)
T ss_pred CCCcccccHhccCEECHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999753
No 9
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=4.4e-109 Score=901.58 Aligned_cols=510 Identities=50% Similarity=0.847 Sum_probs=488.1
Q ss_pred cccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhh
Q 008377 16 EGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEE 95 (568)
Q Consensus 16 ~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~ 95 (568)
+++++.+|.++++.+|+.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|+++
T Consensus 1 ~~~~~~~g~~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~~ 80 (512)
T 3iyg_Q 1 EGAKHFSGLEEAVYRNIQACKELAQTTRTAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQE 80 (512)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEeCCHHHHHHHcccCCHHHHHHHHHHHHhhhh
Confidence 46777888669999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccC
Q 008377 96 IGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFG 175 (568)
Q Consensus 96 ~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~ 175 (568)
+||||||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|+++++... .+..|++.|.++++|+++||..+
T Consensus 81 ~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~~~~~~--~~~~~~~~l~~va~tsl~sK~~~ 158 (512)
T 3iyg_Q 81 VGDGTNFVLVFAGALLELAEELLRLGLSVSEVIEGYEIACKKAHEILPDLVCCSA--KNLRDVDEVSSLLHTSVMSKQYG 158 (512)
T ss_pred hCCChhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcccC--CCCCCHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999999999999999999999999999999865311 25678999999999999999877
Q ss_pred cccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCCCcccccCceEEEEeeccccccccc
Q 008377 176 QEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVGSIKNMEKAKVAVFAGGVDTSATET 255 (568)
Q Consensus 176 ~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~~~~~i~n~kIlll~~~Le~~~~~~ 255 (568)
++++|++++++|+.++++++ ..+++++|+|.|..||++.||++++|++|++++.+||++++|+||+++++||++.+++.
T Consensus 159 ~~~~i~~livdAv~~V~~~~-~~i~v~~I~i~k~~Ggs~~ds~lv~G~~~dk~~~~~~~~~~n~kI~ll~~~le~~~~e~ 237 (512)
T 3iyg_Q 159 NEVFLAKLIAQACVSIFPDS-GHFNVDNIRVCKILGSGVHSSSVLHGMVFKKETEGDVTSVKDAKIAVYSCPFDGMITET 237 (512)
T ss_pred chHHHHHHHHHHHHHHhccC-CcccHhHeeEeeccCCCcccceEEeeEEEecCcCCCCcccccCceEEEecccccccccc
Confidence 78999999999999998753 25889999999999999999999999999999988999999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeec
Q 008377 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (568)
Q Consensus 256 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii 335 (568)
++++.+++++++.++.+.|+++++++++++++.|++||+++++|++.+++||+++||++++++++.+|+|||++|||+++
T Consensus 238 k~~v~Is~~~~l~~~~~~E~~~l~~~v~~I~~~g~~vvi~~~~I~~la~~~l~k~~I~av~~~~~~dle~ia~~tGa~ii 317 (512)
T 3iyg_Q 238 KGTVLIKSAEELMNFSKGEENLMDAQVKAIADTGANVVVTGGRVADMALHYANKYNIMLVRLNSKWDLRRLCKTVGATAL 317 (512)
T ss_pred cceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCC
Q 008377 336 LKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAA 415 (568)
Q Consensus 336 ~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG 415 (568)
+++++++++++|+|+.|++.++|+++|++|++|+.+++++||+|||+|+.+++|.||+++|||+++|+++++|++|||||
T Consensus 318 s~l~~~~~~~LG~a~~v~~~~~g~~~~~~~~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpGGG 397 (512)
T 3iyg_Q 318 PRLNPPVLEEMGHCDSVYLSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGG 397 (512)
T ss_pred cccccCCHHHCCcccEEEEEEeCCeEEEEEEcccCCCceEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhCCCEecCCc
Confidence 99999999999999999999999999999999974578999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCC--cccccc
Q 008377 416 ATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENG--VCADIS 493 (568)
Q Consensus 416 ~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~--~~~d~~ 493 (568)
++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||..+| ++.||+
T Consensus 398 a~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~~~g~~~d~~ 477 (512)
T 3iyg_Q 398 ATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYAVHQEGNKNVGLDIEAEVPAVKDML 477 (512)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCcEEEecCCCCCcccchH
Confidence 999999999999999999999999999999999999999999999999999999999988788899999965 999999
Q ss_pred cCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 494 TMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 494 ~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
+.|||||+.||+++|+.|+|+|++|||||++|.++
T Consensus 478 ~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~k 512 (512)
T 3iyg_Q 478 EAGVLDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 512 (512)
T ss_pred hccCeEcHHHHHHHHHHHHHHHHHHHhHhHheecC
Confidence 99999999999999999999999999999999753
No 10
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.1e-109 Score=902.61 Aligned_cols=504 Identities=26% Similarity=0.489 Sum_probs=479.2
Q ss_pred cccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhcc
Q 008377 18 HKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIG 97 (568)
Q Consensus 18 ~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~G 97 (568)
+++++|. +++.+||.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++|
T Consensus 2 ~~~~~g~-~~~~~ni~a~~~la~~vkttLGP~G~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~G 80 (515)
T 3iyg_G 2 TKRESGR-KVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVG 80 (515)
T ss_pred CcccchH-HHHHHHHHHHHHHHHHHhcCcCCCCCeEEEECCCCCeEEECCHHHHHHhcccCCHHHHHHHHHHHHhhhhhC
Confidence 3455674 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-Cc
Q 008377 98 DGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQ 176 (568)
Q Consensus 98 DGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~ 176 (568)
|||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+++||.. .+
T Consensus 81 DGTTtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~~~l~~va~tsl~sK~i~~~ 156 (515)
T 3iyg_G 81 DGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIP----VDTSNRDTMLNIINSSITTKVISRW 156 (515)
T ss_pred CChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhcc----cCCCCHHHHHHHHHHHhcCCchhhH
Confidence 999999999999999999999999999999999999999999999999876 3556789999999999999964 57
Q ss_pred ccchHHHHHHHHHHhcCC--CCCcccccc-eEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccc
Q 008377 177 EEILCPLIADACIQVCPK--NPANFNVDN-VRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 177 ~~~ls~lv~~a~~~~~~~--~~~~~~l~~-I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~ 251 (568)
.+++++++++|+..+.++ +...+|+++ |+|++++||+++||++++|++|++++. .||+.++||||++++++|+++
T Consensus 157 ~~~~~~i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~ 236 (515)
T 3iyg_G 157 SSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYK 236 (515)
T ss_pred HHHHHHHHHHHHHhcccccCCCcccchhheeEEEEecCCCcccceEEeeEEEeCCCCCCCCcceeeeeEEEEEccccccc
Confidence 888999999999998732 223467764 999999999999999999999999985 589999999999999999999
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhC
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTG 331 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tG 331 (568)
+++.++++.+++++++.++++.|++++++++++|.+.|++|||++++|++.+++||.++||++++++++++|+|||++||
T Consensus 237 k~e~~~~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tG 316 (515)
T 3iyg_G 237 KGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACG 316 (515)
T ss_pred ccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHCCceeeccCCHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeecccCCCCCCCCCcc-eeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCc
Q 008377 332 AVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (568)
Q Consensus 332 a~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~v 410 (568)
|++++++++++++++|+ |+.|++.++|+++|++|++|++ +..+||+|||+|+.+++|.||+++||++++|++++++++
T Consensus 317 a~ii~~l~~l~~~~LG~~a~~v~~~~~g~~~~~~i~g~~~-~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~~~~~~i 395 (515)
T 3iyg_G 317 ARIVSRPEELREEDVGTGAGLLEIKKIGDEYFTFITECKD-PKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQL 395 (515)
T ss_pred CeeeccccccChhhcCCcccEEEEEEECCceEEEEeCCCC-CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHHHhhCCcE
Confidence 99999999999999999 9999999999999999999984 899999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCC-CCceeEeccCCcc
Q 008377 411 VPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASG-KTKVGIDLENGVC 489 (568)
Q Consensus 411 vpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~-~~~~Gid~~~~~~ 489 (568)
|||||++|+++|.+|++++.+.++++|+++++||+|||.||++|++|||+|+.+++.+|++.|.++ +.++|+|+.+|++
T Consensus 396 vpGGGa~e~~~~~~L~~~~~~~~g~eq~~i~~~a~Ale~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~ 475 (515)
T 3iyg_G 396 VPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTL 475 (515)
T ss_pred EeCCCHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCceeeeCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999763 4578999999999
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 490 ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 490 ~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
.||++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 476 ~d~~~~gi~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 513 (515)
T 3iyg_G 476 VDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSG 513 (515)
T ss_pred cccHHcCCEEcHHHHHHHHHHHHHHHHHHHHHHheeec
Confidence 99999999999999999999999999999999999974
No 11
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g*
Probab=100.00 E-value=2.5e-111 Score=923.97 Aligned_cols=516 Identities=25% Similarity=0.423 Sum_probs=484.1
Q ss_pred cccccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHH
Q 008377 8 YGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVL 87 (568)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~ 87 (568)
++...+|+++.+..+|. +++.+||.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++
T Consensus 7 ~~~~~~l~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~e 85 (550)
T 3p9d_G 7 TPTIVVLKEGTDASQGK-GQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVD 85 (550)
T ss_dssp ---------CCCEEESH-HHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHHH
T ss_pred CcchhhhcCCcchhhhH-HHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHHH
Confidence 46677899999999994 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC---HHHHHHH
Q 008377 88 AGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN---TEEVIYR 164 (568)
Q Consensus 88 ~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~---~~~l~~i 164 (568)
+|++|++++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++++++. +..| ++.|.++
T Consensus 86 ~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~~~~L~~v 161 (550)
T 3p9d_G 86 ISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDI----TSEKSSGRELLERC 161 (550)
T ss_dssp HHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECC----CCC------CHHHH
T ss_pred HHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC----CCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998862 3334 7889999
Q ss_pred HHHhhhccc-cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-----CCcccccC
Q 008377 165 MKAAVASKQ-FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-----GSIKNMEK 238 (568)
Q Consensus 165 ~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-----~~~~~i~n 238 (568)
++|+++||+ +.++++|+++++||+.+++++ ++|+++|+|+++.||+++||++++|++|++++. +||++++|
T Consensus 162 A~tsl~sK~~~~~~~~i~~livdAv~~V~~~---~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en 238 (550)
T 3p9d_G 162 ARTAMSSKLIHNNADFFVKMCVDAVLSLDRN---DLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNN 238 (550)
T ss_dssp HHHHHHHTTTGGGHHHHHHHHHHHHHHCCSS---SCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSS
T ss_pred HHHhccCccccccHhHHHHHHHHHHHHhCcc---ccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccC
Confidence 999999996 467899999999999999752 488999999999999999999999999999873 68999999
Q ss_pred ceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeC
Q 008377 239 AKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKIS 318 (568)
Q Consensus 239 ~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v 318 (568)
|||++++++|++++++.++++.+++++++.++++.|++++++++++|++.|++||+++++|++.+++||+++||++++++
T Consensus 239 ~kIll~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v 318 (550)
T 3p9d_G 239 PKILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRV 318 (550)
T ss_dssp CCEEEECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECC
T ss_pred ceEEEeccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHH
Q 008377 319 SKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGV 398 (568)
Q Consensus 319 ~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal 398 (568)
++++|+|||++|||++++++++++++++|+|+.|++.++++++|++|++|++ ++.+||+|||+|+.+++|.||+++|||
T Consensus 319 ~k~~lerIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl 397 (550)
T 3p9d_G 319 SADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQ-AKTCTLLLRGGAEQVIAEVERSLHDAI 397 (550)
T ss_dssp CTTHHHHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTT-CCCCCCCBCSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCC-CceeEEEEeCCcHHHHHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999984 889999999999999999999999999
Q ss_pred HHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCC
Q 008377 399 NTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKT 478 (568)
Q Consensus 399 ~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~ 478 (568)
+++|+++++|++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++++|++.|.+++.
T Consensus 398 ~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~ 477 (550)
T 3p9d_G 398 MIVKRALQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSKGEK 477 (550)
T ss_dssp HHHHHHHHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999977777
Q ss_pred ceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccCC
Q 008377 479 KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIINR 532 (568)
Q Consensus 479 ~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~~ 532 (568)
++|+|+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|.+.
T Consensus 478 ~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~ 531 (550)
T 3p9d_G 478 WYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSES 531 (550)
T ss_dssp CCCBCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC-
T ss_pred ceeeeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCccc
Confidence 899999999999999999999999999999999999999999999999877444
No 12
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A
Probab=100.00 E-value=1e-108 Score=898.05 Aligned_cols=505 Identities=25% Similarity=0.427 Sum_probs=482.1
Q ss_pred ccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCC--CCeEEeccHHHHHhhccccChHHHHHHHHHHHhhh
Q 008377 17 GHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL--DKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQE 94 (568)
Q Consensus 17 ~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~--g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~ 94 (568)
++++.+| .+++.+|+.||+.|++++||||||+||+|||+++. |+++|||||+|||++|+++||+|+|+++++++|++
T Consensus 2 ~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~~G~~~iTnDG~tIlk~i~v~hp~Akll~e~a~~qd~ 80 (513)
T 3iyg_B 2 GADEERA-ETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDD 80 (513)
T ss_pred Ccchhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEeecCCCCCCeEEECCHHHHHHHccccCHHHHHHHHHHHHhhh
Confidence 3455567 48999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC-CCHHHHHHHHHHhhhccc
Q 008377 95 EIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDV-RNTEEVIYRMKAAVASKQ 173 (568)
Q Consensus 95 ~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~-~~~~~l~~i~~t~l~sk~ 173 (568)
++||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++.-. +. .+++.|.++++|+++||+
T Consensus 81 e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~--~~~~~~~~l~~va~tslssK~ 158 (513)
T 3iyg_B 81 EVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREATKAARQALLNSAVDHGS--DEVKFRQDLMNIAGTTLSSKL 158 (513)
T ss_pred hhCCChhhhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCccc--ccccCHHHHHHHHHhhhcccc
Confidence 999999999999999999999999999999999999999999999999999886311 11 368899999999999997
Q ss_pred c-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC-CCcccccCceEEEEeeccccc
Q 008377 174 F-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 174 ~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-~~~~~i~n~kIlll~~~Le~~ 251 (568)
. +++++|++++++|+.+++++ +|+++|+|+++.||+..||++++|++|++++. .||+.++||||++++++|+++
T Consensus 159 ~~~~~~~i~~livdAv~~V~~~----~d~~~I~V~ki~gg~~~ds~lv~G~v~dk~~~~~m~~~~en~kIll~~~~Le~~ 234 (513)
T 3iyg_B 159 LTHHKDHFTKLAVEAVLRLKGS----GNLEAIHVIKKLGGSLADSYLDEGFLLDKKIGVNQPKRIENAKILIANTGMDTD 234 (513)
T ss_pred cccchHHHHHHHHHHHHHhccc----CCcCeEEEEEeCCCCccceeEEeeEEEeccccCCCceeecCceEEEEcCCcccc
Confidence 4 57889999999999999753 78889999999999999999999999999883 489999999999999999999
Q ss_pred ccc-ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHh
Q 008377 252 ATE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (568)
Q Consensus 252 ~~~-~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~t 330 (568)
+++ .++++.+++++++.++.+.|++++++++++|++.|+||||++++|++.+++||.++||++++++++.+|+|||++|
T Consensus 235 k~e~~~~~v~iss~~~l~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~al~~L~~~~I~av~~~~~~~le~ia~~t 314 (513)
T 3iyg_B 235 KIKIFGSRVRVDSTAKVAEIEHAEKEKMKEKVERILKHGINCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVT 314 (513)
T ss_pred cccccCCceEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCccHHHHHHHHHcCceEEecCCHHHHHHHHHHh
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCc
Q 008377 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRI 410 (568)
Q Consensus 331 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~v 410 (568)
||++++++++++++++|+|+.|+++.+|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|++++++++
T Consensus 315 Ga~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~~i 393 (513)
T 3iyg_B 315 GGEIASTFDHPELVKLGSCKLIEEVMIGEDKLIHFSGVAL-GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKDSRT 393 (513)
T ss_pred CCEEecccccCCHhHCCcccEEEEEEECCeEEEEEecCCC-CceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 9999999999999999999999999999999999999974 889999999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCccc
Q 008377 411 VPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCA 490 (568)
Q Consensus 411 vpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~ 490 (568)
|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|..+|++.
T Consensus 394 VpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~ 473 (513)
T 3iyg_B 394 VYGGGCSEMLMAHAVTQLASRTPGKEAVAMESYAKALRMLPTIIADNAGYDSADLVAQLRAAHSEGKTTAGLDMKEGTIG 473 (513)
T ss_pred EeCCcHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCCceeecCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999988778899999999999
Q ss_pred ccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 491 DISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 491 d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
||++.|||||+.||+++|+.|+|+|++|||||++|..+|
T Consensus 474 d~~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~ 512 (513)
T 3iyg_B 474 DMSVLGITESFQVKRQVLLSAAEAAEVILRVDNIIKAAP 512 (513)
T ss_pred chHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998765
No 13
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.8e-108 Score=897.18 Aligned_cols=505 Identities=29% Similarity=0.514 Sum_probs=482.5
Q ss_pred ccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccC
Q 008377 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (568)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (568)
.+++|. +++.+|+.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++||
T Consensus 5 ~~~~g~-~~~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~~~a~~qd~~~GD 83 (518)
T 3iyg_D 5 DRDKPA-QIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGD 83 (518)
T ss_pred cchhhH-HHHHHHHHHHHHHHHHHHhccCCCCCceeeeCCCCCeEEECCHHHHHHHcccchHHHHHHHHHHHHhhhhhCC
Confidence 344564 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc-cCcc
Q 008377 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ-FGQE 177 (568)
Q Consensus 99 Gttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~-~~~~ 177 (568)
||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+++||+ ..+.
T Consensus 84 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~~~l~~vA~tsl~sK~~~~~~ 159 (518)
T 3iyg_D 84 GTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRP----VELSDRETLLNSAATSLNSKVVSQYS 159 (518)
T ss_pred CceeHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHheee----CCCCChHHHHHHhHhhhccccchhhH
Confidence 99999999999999999999999999999999999999999999999886 255678999999999999996 4568
Q ss_pred cchHHHHHHHHHHhcCC-CCCcccccceEEEEccCCCcccceeEeeEEEeecCC-CCcccccCceEEEEeeccccccccc
Q 008377 178 EILCPLIADACIQVCPK-NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV-GSIKNMEKAKVAVFAGGVDTSATET 255 (568)
Q Consensus 178 ~~ls~lv~~a~~~~~~~-~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~-~~~~~i~n~kIlll~~~Le~~~~~~ 255 (568)
++|++++++|+.++++. +...+|+++|+|+++.||+..||++++|++|++++. +||++++||||++++++|+++++++
T Consensus 160 ~~i~~livdAv~~V~~~~~~~~~d~~~I~V~k~~Gg~~~ds~lv~G~~~dk~~~~~mp~~i~n~kIlll~~~Le~~k~~~ 239 (518)
T 3iyg_D 160 SLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLSAPKTDM 239 (518)
T ss_pred HHHHHHHHHHHHHhhccccCCCcccceEEEEEcCCCChhhheEeccEEEecccccCCCccccCceEEEEEeecccccccc
Confidence 89999999999999752 223589999999999999999999999999999987 6899999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEe-----cCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHh
Q 008377 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVS-----GAAVGEMALHFCERYKLMVLKISSKFELRRFCRTT 330 (568)
Q Consensus 256 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~-----~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~t 330 (568)
+.++.+++++++.+++++|+++++.+++++.+.|+||||+ +++|++.+++||.++||++++++++.+|+|||++|
T Consensus 240 ~~~i~is~~~~~~~~~~~E~~~l~~~le~I~~~g~~lvi~~k~i~~~~I~~~Al~~L~~~~I~av~~~~~~~le~ia~~t 319 (518)
T 3iyg_D 240 DNQIVVSDYVQMDRVLREERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLALHFLNKMKIMVVKDIEREDIEFICKTI 319 (518)
T ss_pred CceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccccccCcCHHHHHHHHHcCcEEEecCCHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred CCeecccCCCCCCCCCcceeEEEEEEEcC-eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCC
Q 008377 331 GAVAMLKLCQPNPDDLGYVDSVSVEEIGG-ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSR 409 (568)
Q Consensus 331 Ga~ii~~~~~l~~~~lG~~~~v~~~~ig~-~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~ 409 (568)
||++++++++++++++|+|+.|++.++|+ ++|++|++|++.++.+||+|||+|+.+++|.||+++||++++|+++++|+
T Consensus 320 Ga~ii~~l~~l~~~~LG~a~~v~~~~~g~~~~~~~~~g~~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~av~~~~ 399 (518)
T 3iyg_D 320 GTKPVAHVDQFTADMLGSAELAEEVSLNGSGKLIKITGCASPGKTVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA 399 (518)
T ss_pred CCEEecccccCCHHHCCcCcEEEEEEeCCCceEEEEECCCCCCceEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999 89999999974478999999999999999999999999999999999999
Q ss_pred cccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcc
Q 008377 410 IVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVC 489 (568)
Q Consensus 410 vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~ 489 (568)
+|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|..+|++
T Consensus 400 iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~ 479 (518)
T 3iyg_D 400 LIAGGGAPEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPSTLAENAGLNPISTVTELRNRHAQGEKTTGINVRKGGI 479 (518)
T ss_pred EeecCcHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCceeEeCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999998877889999999999
Q ss_pred cccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 490 ADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 490 ~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
.||++.|||||+.||+++|+.|+|+|++|||||++|.++
T Consensus 480 ~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 518 (518)
T 3iyg_D 480 SNILEELVVQPLLVSVSALTLATETVRSILKIDDVVNTR 518 (518)
T ss_pred cchhhccCEEcHHHHHHHHHHHHHHHHHHHhhcceEecC
Confidence 999999999999999999999999999999999999763
No 14
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a*
Probab=100.00 E-value=1.9e-108 Score=902.81 Aligned_cols=518 Identities=29% Similarity=0.437 Sum_probs=487.6
Q ss_pred CCcccccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHH
Q 008377 6 QPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLL 85 (568)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll 85 (568)
|..+... |+++....+|. +++.+|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+
T Consensus 6 ~~~~~~~-~~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll 83 (559)
T 3p9d_A 6 NNSRSDT-LFLGGEKISGD-DIRNQNVLATMAVANVVKSSLGPVGLDKMLVDDIGDFTVTNDGATILSLLDVQHPAGKIL 83 (559)
T ss_dssp --CCCCS-CCSSCEEEETH-HHHHHHHHHHHHHHHHTTTTSSTTCCEEEECCSSSCCCEECCHHHHHHHHCCCSHHHHHH
T ss_pred cCCccch-hhccccccchH-HHHHHHHHHHHHHHHHHHhccCCCCCeeEeEcCCCCEEEECCHHHHHHHhcCCCHHHHHH
Confidence 3333334 57888787884 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHh-hhhcccCCCCCCCHHHHHHH
Q 008377 86 VLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEE-LVEEGSENMDVRNTEEVIYR 164 (568)
Q Consensus 86 ~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~-~~~~~~~~~d~~~~~~l~~i 164 (568)
+++|++|++++||||||++|||++||+++.+++++|+||+.|++||+.|.+.++++|++ ++.+ + +..|++.|.++
T Consensus 84 ~e~a~~qd~e~GDGTTtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~-v---~~~~~e~L~~v 159 (559)
T 3p9d_A 84 VELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTS-V---DTLGKETLINI 159 (559)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHTGGG-S---CC--CTTHHHH
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccC-C---CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 8876 2 44467889999
Q ss_pred HHHhhhccc-cCcccchHHHHHHHHHHhcC-C--CCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCccccc-
Q 008377 165 MKAAVASKQ-FGQEEILCPLIADACIQVCP-K--NPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNME- 237 (568)
Q Consensus 165 ~~t~l~sk~-~~~~~~ls~lv~~a~~~~~~-~--~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~- 237 (568)
++|+++||+ .+++++|++++++|+.++++ + +...+++++|+|++++||+++||++++|++|++++. .||+.++
T Consensus 160 A~tsl~sK~~~~~~~~i~~livdAv~~V~~~~~~~~~~i~l~~I~I~k~~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ie~ 239 (559)
T 3p9d_A 160 AKTSMSSKIIGADSDFFSNMVVDALLAVKTQNSKGEIKYPVKAVNVLKAHGKSATESLLVPGYALNCTVASQAMPKRIAG 239 (559)
T ss_dssp HHHTTSSSGGGTTHHHHHHHHHHHHHHHCCEESSSCEECCTTCCCEEEEESSCSSCCBCCSEECCCCCCSSTTSCSEECS
T ss_pred HHHHhccCcccchhHHHHHHHHHHHHHhcccccCCCCccchhHeEEEEecCCCccceeEeccEEEeecccCCCcceeecc
Confidence 999999996 45789999999999999984 1 123589999999999999999999999999999874 5899999
Q ss_pred -CceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEE
Q 008377 238 -KAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (568)
Q Consensus 238 -n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~ 316 (568)
||||++++++|++++++.++++.+++++++.++.++|+++++.++++|++.|++|||++++|++.+++||.++||++++
T Consensus 240 ~n~kIll~~~~Le~~k~e~~~~v~is~~~~l~~i~~~E~~~l~~~le~I~~~g~~lvI~~~~I~~~al~~L~~~~I~av~ 319 (559)
T 3p9d_A 240 GNVKIACLDLNLQKARMAMGVQINIDDPEQLEQIRKREAGIVLERVKKIIDAGAQVVLTTKGIDDLCLKEFVEAKIMGVR 319 (559)
T ss_dssp SSBCEEEETTCCSCCCCCTTCCEEECSSSCHHHHHHHHHHHHHHHHHHHHTTCCSEEEESSCCCGGGTHHHHHTTCEEES
T ss_pred CCceEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCceEc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHHHhCCeecccC------CCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHH
Q 008377 317 ISSKFELRRFCRTTGAVAMLKL------CQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDL 390 (568)
Q Consensus 317 ~v~~~~Le~Ia~~tGa~ii~~~------~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~ 390 (568)
++++.+|+|||++|||++++++ ++++++++|+|+.|+++++++++|++|++|++ ++.+||+|||+|+.+++|.
T Consensus 320 ~~~k~~le~ia~~TGa~iis~~~~l~~~e~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrG~te~~l~E~ 398 (559)
T 3p9d_A 320 RCKKEDLRRIARATGATLVSSMSNLEGEETFESSYLGLCDEVVQAKFSDDECILIKGTSK-HSSSSIILRGANDYSLDEM 398 (559)
T ss_dssp SCCHHHHHHHHHHSSCCCBCCSCCSTTCCCCCTTTSCCEEEEEEEECSSCEEECEEEESS-SCCCCEEEEESCHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCEEEeccccccccccCCHhHCccceEEEEEEEcCceEEEEEcCCC-CCEEEEEEcCCCHHHHHHH
Confidence 9999999999999999999998 78999999999999999999999999999984 8999999999999999999
Q ss_pred HHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Q 008377 391 ERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLY 470 (568)
Q Consensus 391 ~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~ 470 (568)
||+++|||+++|+++++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|+
T Consensus 399 kr~l~DAL~~~r~av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~ 478 (559)
T 3p9d_A 399 ERSLHDSLSVVKRTLESGNVVPGGGCVEAALNIYLDNFATTVGSREQLAIAEFAAALLIIPKTLAVNAAKDSSELVAKLR 478 (559)
T ss_dssp HHHHHHHHHHHHHHHTSSCEECTTTTHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCEEeCccHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCC------------ceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCcc
Q 008377 471 AEHASGKT------------KVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLII 530 (568)
Q Consensus 471 ~~~~~~~~------------~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~ 530 (568)
+.|.+++. ++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|...|.
T Consensus 479 ~~h~~~~~~~~~~~~~~~~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~ 550 (559)
T 3p9d_A 479 SYHAASQMAKPEDVKRRSYRNYGLDLIRGKIVDEIHAGVLEPTISKVKSLKSALEACVAILRIDTMITVDPE 550 (559)
T ss_dssp HHHHTTSCCC----CCCCCCCEEECTTSSSEEESTTSSCCEEHHHHHHHHHHHHHHHHHHHTEEEEEECCCC
T ss_pred HHHhccccccccccccccccceeEECCCCcEeehhhccCEecHHHHHHHHHHHHHHHHHHHhHHhhhhcCCc
Confidence 99976554 7999999999999999999999999999999999999999999999988763
No 15
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=3.5e-107 Score=887.19 Aligned_cols=505 Identities=27% Similarity=0.449 Sum_probs=480.5
Q ss_pred ccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccC
Q 008377 19 KHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGD 98 (568)
Q Consensus 19 ~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GD 98 (568)
.+.+| .+++..|+.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||
T Consensus 4 ~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~g~~~iTnDG~tIlk~i~~~hP~Akll~~~a~~qd~~~GD 82 (515)
T 3iyg_E 4 SRLMG-LEALKSHIMAAKAVANTMKTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGD 82 (515)
T ss_pred hhhch-HHHHHHHHHHHHHHHHHHhhccCCCCCeEEEEcCCCCeEEeCcHHHHHHHcccCCHHHHHHHHHHHHhhhhhCC
Confidence 34466 48999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-Ccc
Q 008377 99 GANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQE 177 (568)
Q Consensus 99 Gttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~ 177 (568)
||||++|||++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+.- .+..|++.|.++++|+++||.. .+.
T Consensus 83 GTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~--~~~~~~~~l~~vA~tsl~sK~i~~~~ 160 (515)
T 3iyg_E 83 GTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIEHLDKISDSVL--VDMKNTEPLIQTAKTTLGSKVVNSCH 160 (515)
T ss_pred chhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhceecC--CCccCHHHHHHHHHHHhcccchhHHH
Confidence 9999999999999999999999999999999999999999999999987631 1335688999999999999964 468
Q ss_pred cchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccc
Q 008377 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATET 255 (568)
Q Consensus 178 ~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~ 255 (568)
++|++++++|+..+.+.....+|+++|+|++++||++.||++++|++|++++. .||+.++||||++++++|++.+++.
T Consensus 161 ~~l~~l~~dav~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lv~G~~~dk~~~~~~m~~~~~~~kIall~~~le~~k~~~ 240 (515)
T 3iyg_E 161 RQMAEIAVNAVLTVADMQRRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKT 240 (515)
T ss_pred HHHHHHHHHHHHhhcccccCCCCcccEEEEEecCCCcccceEEeeEEEecccccccccccCCCceEEEEcCccccccccc
Confidence 99999999999999764334588899999999999999999999999999985 5899999999999999999999999
Q ss_pred cceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeec
Q 008377 256 KGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAM 335 (568)
Q Consensus 256 ~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii 335 (568)
++++.+++++++.++.+.|+++++.+++++.+.|+||||++++|++.+++||.++||++++++++.+|+|||++|||+++
T Consensus 241 ~~~~~is~~~~l~~~~~~E~~~l~~~lekI~~~g~~vvi~~~~I~~~al~~L~~~~I~~v~~v~k~~le~ia~~tGa~ii 320 (515)
T 3iyg_E 241 KHKLDVTSVEDFKALQKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWVGGPEIELIAIATGGRIV 320 (515)
T ss_pred cceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHHhCCEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcceeEEEEEEEcC--eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccC
Q 008377 336 LKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPG 413 (568)
Q Consensus 336 ~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpG 413 (568)
+++++++++++|+|+.|+++++|+ ++|++|++|++ +..+||+|||+|+.+++|.||+++||++++|+++++|++|||
T Consensus 321 ~~l~~l~~~~LG~a~~v~~~~ig~~k~~~~~~~g~~~-~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~a~~~~~iVpG 399 (515)
T 3iyg_E 321 PRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKN-SRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYG 399 (515)
T ss_pred cccccCCHHHCCcceEEEEEEeccccceEEEEEcCCC-CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHhcCCcCCC
Confidence 999999999999999999999997 79999999984 889999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCceeEeccCCccccc
Q 008377 414 AAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLENGVCADI 492 (568)
Q Consensus 414 GG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~-~~~~~Gid~~~~~~~d~ 492 (568)
||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+ ++.++|+|..+|++.||
T Consensus 400 GGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~~G~d~~~g~~~d~ 479 (515)
T 3iyg_E 400 GGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALAENSGMNPIQTMTEVRARQVKEVNPALGIDCLHKGTNDM 479 (515)
T ss_pred CcHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCCCeeeEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999975 45689999999999999
Q ss_pred ccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 493 STMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 493 ~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
++.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 480 ~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~ 514 (515)
T 3iyg_E 480 KHQHVIETLIGKKQQISLATQMVRMILKIDDIRKP 514 (515)
T ss_pred HhccCEEcHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 99999999999999999999999999999999975
No 16
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=100.00 E-value=1.3e-107 Score=889.37 Aligned_cols=497 Identities=25% Similarity=0.431 Sum_probs=476.2
Q ss_pred cChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchh
Q 008377 22 SGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGAN 101 (568)
Q Consensus 22 ~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGtt 101 (568)
+| .+++..||.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|++++|||||
T Consensus 7 ~~-~~a~~~ni~a~~~la~~vkttlGPkG~~kml~~~~g~~~iTnDG~tIlk~i~v~hp~akll~~~a~~qd~e~GDGTT 85 (517)
T 3iyg_Z 7 RA-QAALAVNISAARGLQDVLRTNLGPKGTMKMLVSGAGDIKLTKDGNVLLHEMQIQHPTASLIAKVATAQDDITGDGTT 85 (517)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHHHHHhCCCce
Confidence 45 48999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-Ccccch
Q 008377 102 LTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEIL 180 (568)
Q Consensus 102 t~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~~~l 180 (568)
|++||+++||+++.+++++|+||+.|++||+.|.+.+++.|++++++. +. +++.|.++++|+++||+. .+.++|
T Consensus 86 tvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~-~~~~L~~va~tsl~sKi~~~~~d~l 160 (517)
T 3iyg_Z 86 SNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSK----EM-DRETLIDVARTSLRTKVHAELADVL 160 (517)
T ss_pred eHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhhCcCC----CC-CHHHHHHHHHHHhccccchhHHHHH
Confidence 999999999999999999999999999999999999999999998762 32 788999999999999974 468999
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccce
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGT 258 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~ 258 (568)
+++++||+..+.+.+ ..+|+++|+|++++||+..||++++|++|++++. .||++++||||++++++|++++++.+++
T Consensus 161 a~l~vdaV~~V~~~~-~~~dl~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 161 TEAVVDSILAIKKQD-EPIDLFMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHHHhheeccCC-CcCChhHheeeeecCCCccccceEeeEEEeccCCCCCccccccCCeEEEeccccccccccccee
Confidence 999999999987543 3589999999999999999999999999999874 5899999999999999999999999999
Q ss_pred EEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------EEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHH
Q 008377 259 VLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE---------VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (568)
Q Consensus 259 i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~---------vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~ 329 (568)
+.++++++++++.+.|++++++.+++|...+++ |||++++|++.+++||.++||++++++++.+|+|||++
T Consensus 240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~ 319 (517)
T 3iyg_Z 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLA 319 (517)
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCceEEEecccCCHHHHHHHHHCCCEEEEecCHHHHHHHHHH
Confidence 999999999999999999999999999998877 58999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCC-CcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCC
Q 008377 330 TGAVAMLKLCQPNPDD-LGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDS 408 (568)
Q Consensus 330 tGa~ii~~~~~l~~~~-lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~ 408 (568)
|||+++++++++++++ +|+|+ |++.++|+++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|+++++|
T Consensus 320 tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~~~~~~~~g~~~-~~~~TI~lrG~t~~~l~E~kr~l~DAl~~~r~av~~~ 397 (517)
T 3iyg_Z 320 CGGIALNSLDDLNPDCLLGHAG-VYEYTLGEEKFTFIEKCNN-PRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDG 397 (517)
T ss_pred hCCEEecchhhCcccccCCcce-EEEEEEcCceEEEEeCCCC-chhheeeecCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 99999 9999999999999999984 8899999999999999999999999999999999999
Q ss_pred CcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCc
Q 008377 409 RIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGV 488 (568)
Q Consensus 409 ~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~ 488 (568)
++|||||++|+++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+|+.+|+
T Consensus 398 ~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~iP~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~ 477 (517)
T 3iyg_Z 398 CVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSESGQLVGVDLNTGE 477 (517)
T ss_pred eEecCccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred ccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 489 CADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 489 ~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
+.||++.|||||+.||+++|+.|+|+|++|||||++|.+
T Consensus 478 ~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~ 516 (517)
T 3iyg_Z 478 PMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIMRA 516 (517)
T ss_pred ccchhhccCeecHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999975
No 17
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d*
Probab=100.00 E-value=1.4e-108 Score=899.02 Aligned_cols=510 Identities=25% Similarity=0.464 Sum_probs=485.8
Q ss_pred cccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhh
Q 008377 14 LKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQ 93 (568)
Q Consensus 14 ~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~ 93 (568)
++.+....+| .+++..|+.||+.|+++|+|||||+||+|||+++.|+++|||||+|||++|+++||+|+|+++++++|+
T Consensus 8 ~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~qd 86 (528)
T 3p9d_D 8 NATFKNKEKP-QEVRKANIIAARSVADAIRTSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQD 86 (528)
T ss_dssp CCSSCBCCCH-HHHHHHHHHHHHHHHHHHTTTSSTTCCCEEEECSSCCEEEECCHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred ccccchhcch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCeEEECCHHHHHHHcccCCHHHHHHHHHHHHhh
Confidence 4555566667 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccc
Q 008377 94 EEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQ 173 (568)
Q Consensus 94 ~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~ 173 (568)
+++||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+++||.
T Consensus 87 ~e~GDGTTtvvVLA~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~e~l~~va~tsl~sK~ 162 (528)
T 3p9d_D 87 SEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHK----VSLSDREQLVRAASTSLSSKI 162 (528)
T ss_dssp HHTCSCSHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCC----CCSCCHHHHHHHHHHHSCSSS
T ss_pred hhhCCChhhHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhhCC----CCCCCHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999876 255689999999999999996
Q ss_pred -cCcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--C-CcccccCceEEEEeeccc
Q 008377 174 -FGQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--G-SIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 174 -~~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~-~~~~i~n~kIlll~~~Le 249 (568)
..++++|++++++|+.++++.....+|+++|+|++++||+++||++++|++|++++. . ||+.++||||++++++|+
T Consensus 163 ~~~~~~~i~~livdAv~~V~~~~~~~i~v~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~~m~~~ien~kIll~~~~le 242 (528)
T 3p9d_D 163 VSQYSSFLAPLAVDSVLKISDENSKNVDLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQIS 242 (528)
T ss_dssp CSTTHHHHHHHHHHHHHTTCCTTTTCCCGGGSBCCCCCSSCSCCCEEESSCBCCCCCCCSSSCCSEESSEEEEEECCCSS
T ss_pred cchhHHHHHHHHHHHHHHhccccCCccceEEEEEEEecCCCccceEEEeeeEEeecccCcccCcccccCceEEEEecccc
Confidence 457899999999999999864223589999999999999999999999999999884 3 899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCc-----cHHHHHHHHhCCeEEEEeCChhHHH
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAV-----GEMALHFCERYKLMVLKISSKFELR 324 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I-----~~~al~~l~~~~I~vv~~v~~~~Le 324 (568)
+++++.++++.++++++++++.++|+++++.+++++.+.|+||||++++| ++.+++||.++||++++++++.+|+
T Consensus 243 ~~k~~~~~~i~i~~~~~~~~~~~~E~~~l~~~le~I~~~g~~vvi~~~~I~~~a~~~~al~~L~~~~I~av~~~~k~~le 322 (528)
T 3p9d_D 243 PPKPDTENNIIVNDYRQMDKILKEERAYLLNICKKIKKAKCNVLLIQKSILRDAVNDLALHFLSKLNIMVVKDIEREEIE 322 (528)
T ss_dssp CCCCSSEEEEEESSSSHHHHHTHHHHHHHHHHHHHHHHTTCCEEEESSCSCTTSCSCHHHHHHTTTSCCEEECCCTHHHH
T ss_pred ccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcccccCCHHHHHHHHHcCcEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecC--CCCceEEEEEcCCChhHHHHHHHHHhhHHHHHH
Q 008377 325 RFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEG--GGNSVSTVVLRGSTDSILDDLERAVDDGVNTYK 402 (568)
Q Consensus 325 ~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~--~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~ 402 (568)
|||++|||++++++++++++++|+|+.|++.++|+++|++|++|+ +.++.+||+|||+|+.+++|.||+++||++++|
T Consensus 323 ~ia~~tGa~ii~~~~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~~~~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r 402 (528)
T 3p9d_D 323 FLSKGLGCKPIADIELFTEDRLDSADLVEEIDSDGSKIVRVTGIRNNNARPTVSVVIRGANNMIIDETERSLHDALCVIR 402 (528)
T ss_dssp HHHHHHTCCCCSCSTTCCSSSEEEESCEECCEETTEECCBCTTBCCGGGCCCCEEECCCSSTTHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHCCEEecccccCCHHHCCcccEEEEEEECCEEEEEEEcccccCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 226899999999999999999999999999999
Q ss_pred HHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeE
Q 008377 403 AMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGI 482 (568)
Q Consensus 403 ~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gi 482 (568)
+++++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|+
T Consensus 403 ~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~ 482 (528)
T 3p9d_D 403 CLVKERGLIAGGGAPEIEISRRLSKEARSMEGVQAFIWQEFASALEVIPTTLAENAGLNSIKVVTELRSKHENGELNDGI 482 (528)
T ss_dssp HHHHSSCEEETTTHHHHHHHHHHHHCCTTSCHHHHTTHHHHHHHHTHHHHHHHHTTSSCHHHHHHHHTTCCCSSSCCCCC
T ss_pred HHHhcCCccCCCCHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCccce
Confidence 99999999999999999999999999988999999999999999999999999999999999999999999887788999
Q ss_pred eccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcC
Q 008377 483 DLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDL 528 (568)
Q Consensus 483 d~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~ 528 (568)
|..+|++.||++.|||||+.||+++|+.|+|+|++|||||++|.++
T Consensus 483 d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~ 528 (528)
T 3p9d_D 483 SVRRSGTTNTYEEHILQPVLVSTSAITLASECVKSILRIDDIAFSR 528 (528)
T ss_dssp CSSSSSCCCHHHHCCEEEHHHHHHHHHHHHHHHHHHHHCSCCCBCC
T ss_pred ecCCCCccchHhccCeecHHHHHHHHHHHHHHHHHHHhhhHheecC
Confidence 9999999999999999999999999999999999999999999763
No 18
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B
Probab=100.00 E-value=6.7e-108 Score=898.54 Aligned_cols=514 Identities=28% Similarity=0.476 Sum_probs=483.6
Q ss_pred cccccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHH
Q 008377 10 IQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAG 89 (568)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~ 89 (568)
...+|+++.+..+|. +++..|+.||+.|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|
T Consensus 4 ~~~~~~~~~~~~~g~-~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~~~hP~Akll~e~a 82 (590)
T 3p9d_C 4 PVVFMNASQERTTGR-QAQISNITAAKAVADVIRTCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELS 82 (590)
T ss_dssp --CCSCTTCCBCTTH-HHHHTTHHHHHHHHHHSTTTCSSSCCCCEEECTTTCCBCCCCHHHHHHHSCCCCHHHHTHHHHT
T ss_pred CeEeecCCcchhhHH-HHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECCHHHHHHHhhCCCHHHHHHHHHH
Confidence 456789999998895 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhccCchhHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHh
Q 008377 90 KAQQEEIGDGANLTISFAGEILQGAEEL-IRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAA 168 (568)
Q Consensus 90 ~~~~~~~GDGttt~vlL~~~Ll~~a~~l-i~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~ 168 (568)
++|++++||||||++|||++||+++.++ +.+|+||+.|++||+.|.+.++++|++++.+ ++..|++.|.++++|+
T Consensus 83 ~~qd~e~GDGTTtvvVLA~eLL~~a~~l~l~~GihP~~I~~G~~~A~~~a~~~L~~~s~~----v~~~~~e~L~~vA~ts 158 (590)
T 3p9d_C 83 RTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKP----VDVENDAAMKKLIQAS 158 (590)
T ss_dssp TTHHHHCSSCHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHCCT----TTTCCTHHHHHHHTTT
T ss_pred HhhhhhhCCCccchHHHHHHHHhhhHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHhhc----cccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999876 3556789999999999
Q ss_pred hhccc-cCcccchHHHHHHHHHHhcCCCCC--------ccccc-ceEEEEccCCCcccceeEeeEEEeecCC--CCcccc
Q 008377 169 VASKQ-FGQEEILCPLIADACIQVCPKNPA--------NFNVD-NVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM 236 (568)
Q Consensus 169 l~sk~-~~~~~~ls~lv~~a~~~~~~~~~~--------~~~l~-~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i 236 (568)
++||. .+++++|++++++|+.++++++.. .+|++ +|+|++++||++.||++++|++|++++. .||+.+
T Consensus 159 lsSK~~~~~~~~i~~livdAv~~V~~~~~~~~~~~~~~~vDl~~~I~I~ki~Ggs~~ds~lv~Gmvfdk~~~~~~m~~~~ 238 (590)
T 3p9d_C 159 IGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEGEPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHI 238 (590)
T ss_dssp STTSTTGGGHHHHHHHHHHHHTTSTTCC-----------CCCSSSSCEEEESSCCGGGCBCCSSEEECCCCSCTTSCSCE
T ss_pred HhcccccccHHHHHHHHHHHHHHhcccccCccccccccccchhhceEEEEecCCCcccceeeeEEEEecccCCCCCccee
Confidence 99996 457899999999999999865321 34554 6999999999999999999999999874 589999
Q ss_pred cCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEE
Q 008377 237 EKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLK 316 (568)
Q Consensus 237 ~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~ 316 (568)
+||||++++++|++++++.++++.+++++++.++++.|++++++++++|++.|++|||++++|++.+++||.++||++|+
T Consensus 239 en~kIll~d~~Le~~K~e~~~~v~Is~~~~l~~il~~E~~~l~~~vekI~~~g~~vII~e~~I~d~Al~~L~k~~I~av~ 318 (590)
T 3p9d_C 239 ENPRVVLLDCPLEYKKGESQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSVLR 318 (590)
T ss_dssp ESCCEECCCCCCSCCCCTTTEECCBCSTTHHHHHHHHHHHHHHHHHHHHHTTCCSEECCSSCCCTHHHHHHHHTTCCCCC
T ss_pred eeeEEEEEcccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCcCHHHHHHHHhccceeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCChhHHHHHHHHhCCeecccCCCCCCCCCcc-eeEEEEEEEcCeEEEEEEecCCCCce---------------------
Q 008377 317 ISSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGGGNSV--------------------- 374 (568)
Q Consensus 317 ~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~~~~~--------------------- 374 (568)
++++.+|+|||++|||++++++++++++++|+ |+.|++..+++++|++|++|++ +..
T Consensus 319 ~~~k~~le~ia~~TGa~iis~l~~~~~~~LG~~a~~v~~~~ig~d~~~~i~g~~~-~~~~~~~~~~~~~~~~~k~~~~~~ 397 (590)
T 3p9d_C 319 RVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKE-PGSGSGWSHPQFEKGSGKRRWKKN 397 (590)
T ss_dssp CCCHHHHHHHHHHHTCCCCSCSTTCCTTSCBCCCSEEECCEETTEECEEECC----------------------------
T ss_pred cCCHHHHHHHHHHhCCceeecccCCCHHHhCCcCCEEEEEEEcCcEEEEEeCCCC-ccccccccccccccccchhhhhcc
Confidence 99999999999999999999999999999999 9999999999999999999863 444
Q ss_pred -----------------------------------EEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHH
Q 008377 375 -----------------------------------STVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEI 419 (568)
Q Consensus 375 -----------------------------------~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~ 419 (568)
+||+|||+|+.+++|.||+++||++++|+++++|++|||||++|+
T Consensus 398 ~~~~~i~~r~~~i~~~~~~~~~~~~~~~~~l~ggv~tI~lrg~te~~l~E~kr~i~DAl~a~r~av~~~~iVpGGGa~e~ 477 (590)
T 3p9d_C 398 FIAVSAANRFKKISSSGALGSGHHHHHHHHGSGKACTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEM 477 (590)
T ss_dssp ------------------------------CCCSCCCEEEECSSTTTHHHHHHHHHHHHHHHHHHHHCCCEECTTTHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCCHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCEEeCccHHHH
Confidence 999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccc
Q 008377 420 ELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWD 499 (568)
Q Consensus 420 ~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~d 499 (568)
++|.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+++.++|||..+|++.||++.||||
T Consensus 478 ~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d~~~g~~~dm~~~gI~d 557 (590)
T 3p9d_C 478 AVSVKLAEKAKQLEGIQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHAQGNFTTGIDGDKGKIVDMVSYGIWE 557 (590)
T ss_dssp HHHHHHHHHHHHSCSTTHHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHTTSCTTCBCCTTSSSCBCTTTTTCCE
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEeEeCCCCeEeehHHcCCeE
Confidence 99999999998899999999999999999999999999999999999999999988778899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 500 LYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 500 p~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
|+.||+++|+.|+|+|++|||||++|...|
T Consensus 558 p~~vk~~al~~A~e~a~~iL~id~ii~~~~ 587 (590)
T 3p9d_C 558 PEVIKQQSVKTAIESACLLLRVDDIVSGVR 587 (590)
T ss_dssp EHHHHHHHHHHHHHHHHHTTSEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999998765
No 19
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e*
Probab=100.00 E-value=5.6e-107 Score=891.70 Aligned_cols=505 Identities=27% Similarity=0.431 Sum_probs=476.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCch
Q 008377 21 MSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 21 ~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGt 100 (568)
.+| .+++..|+.||+.|+++|||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||||
T Consensus 41 ~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGT 119 (562)
T 3p9d_E 41 QHG-LEAKKSHILAARSVASIIKTSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGT 119 (562)
T ss_dssp SHH-HHHHHHHHHHHHHHHHHTTTSSSTTCCEEEEECSSSCEEEESCHHHHHHHSCCCSHHHHHHHHHHHHHHHHTSSCT
T ss_pred cch-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCEEEECCHHHHHHHccCCCHHHHHHHHHHHHHHhhcCCCc
Confidence 345 5999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC--HHHHHHHHHHhhhcccc-Ccc
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN--TEEVIYRMKAAVASKQF-GQE 177 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~--~~~l~~i~~t~l~sk~~-~~~ 177 (568)
||++||+++||+++.+++.+|+||+.|++||+.|.+.++++|++++.+. . .+..| ++.|.++++|+++||.. .+.
T Consensus 120 TtvvVLA~~LL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v-~-~~~~~~~~e~L~~vA~tSl~sK~i~~~~ 197 (562)
T 3p9d_E 120 TGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDI-S-ASNDELFRDFLLRAAKTSLGSKIVSKDH 197 (562)
T ss_dssp THHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTTTSSS-S-BCCCSSCHHHHHHHHHHHHSSSTTTTTH
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccCc-C-CCcchhhHHHHHHHHHHhcCCchhHHHH
Confidence 9999999999999999999999999999999999999999999998762 1 11122 37899999999999964 568
Q ss_pred cchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccc------cCceEEEEeeccc
Q 008377 178 EILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNM------EKAKVAVFAGGVD 249 (568)
Q Consensus 178 ~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i------~n~kIlll~~~Le 249 (568)
++|+++++||+..+.+.....+|+++|+|+++.||+++||++++|++|++++. .||+.+ +++||++++++|+
T Consensus 198 d~la~l~vdAV~~V~~~~~~~~d~~~I~I~k~~Ggs~~ds~lveGmv~dk~~~sp~m~~~~~~~~~~~~~kIall~~~le 277 (562)
T 3p9d_E 198 DRFAEMAVEAVINVMDKDRKDVDFDLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFE 277 (562)
T ss_dssp HHHHHHHHHHHHTSSTTTCSCCCCCCCEEEEESSSCGGGCEEESSEEESSCCCTTSCCC-----TTCSSCEECEEESCCS
T ss_pred HHHHHHHHHHheeecccccCCCCcccEEEEEecCCChhhhceeeeEEEecCCCCCCcCcccccccccccceEEEeccccc
Confidence 99999999999998764334688999999999999999999999999999985 588888 8999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHH
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRT 329 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~ 329 (568)
+.+++.++++.+++++++..+.++|+++++.++++|++.|+||||++++|++.+++||.++||++++++++.+|+|||++
T Consensus 278 ~~k~~~~~~~~Iss~~~~~~~~~~E~~~l~~~lekI~~~g~~vvI~~~~I~~~Al~~L~~~~I~~v~~v~k~~le~ia~~ 357 (562)
T 3p9d_E 278 PPKPKTKHKLDISSVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQELEHIAIS 357 (562)
T ss_dssp SCCCSSCCCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHTCSCCEECSSCCSHHHHHHHTTTCCCEECCCTTTHHHHHHH
T ss_pred ccccccCceEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHCCCEEEeccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeecccCCCCCCCCCcceeEEEEEEEcC--eEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhC
Q 008377 330 TGAVAMLKLCQPNPDDLGYVDSVSVEEIGG--ARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRD 407 (568)
Q Consensus 330 tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~--~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~ 407 (568)
|||++++++++++++++|+|+.|+++++|+ ++|++|++|++ ++.+||+|||+|+.+++|.||+++||++++|+++++
T Consensus 358 TGa~iis~l~~l~~~~LG~a~~v~~~~ig~~~~~~~~i~g~~~-~~~~TIllrG~te~~l~E~kr~i~DAL~~~r~av~~ 436 (562)
T 3p9d_E 358 TNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKE-TKTVTCFVRGSNKMIVDEAERALHDSLCVVRNLVKD 436 (562)
T ss_dssp HCCCEEESSSCCCTTSCEECSCEEEECCSSSSCCEEEECCCSC-CSCCEEEEECTTTTTHHHHTHHHHHHHHHHHHHHHS
T ss_pred hCCEEEeccccCCHHHCCcceEEEEEEeccCCceEEEEecCCC-CCeEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999985 89999999984 889999999999999999999999999999999999
Q ss_pred CCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhC-CCCceeEeccC
Q 008377 408 SRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS-GKTKVGIDLEN 486 (568)
Q Consensus 408 ~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~-~~~~~Gid~~~ 486 (568)
|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+ ++.++|+|+.+
T Consensus 437 g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~~G~d~~~ 516 (562)
T 3p9d_E 437 SRVVYGGGAAEVTMSLAVSEEADKQRGIDQYAFRGFAQALDTIPMTLAENSGLDPIGTLSTLKSKQLKEKISNIGVDCLG 516 (562)
T ss_dssp CCEEETTTHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHTHHHHHHHHTTTSCHHHHHHHHHHHHHHTTTSSBCCBTTT
T ss_pred CCcCCCCcHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCCCceeEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999975 45789999999
Q ss_pred CcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 487 GVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 487 ~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
|++.||++.|||||+.||+++|+.|+|+|++|||||++|..++
T Consensus 517 g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~ii~~~~ 559 (562)
T 3p9d_E 517 YGSNDMKELFVVDPFIGKKQQILLATQLCRMILKIDNVIISGK 559 (562)
T ss_dssp TBCCBTTTTTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEECCC
T ss_pred CcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999999999999999999998754
No 20
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=100.00 E-value=1.2e-107 Score=895.80 Aligned_cols=513 Identities=25% Similarity=0.410 Sum_probs=481.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHh
Q 008377 13 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQ 92 (568)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~ 92 (568)
+++++.+..+| .+++..||.||+.|++++||||||+||+|||+++.|+++|||||+|||++|+++||+|+|++++|++|
T Consensus 5 ~~~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~iTnDG~tIlk~i~v~hP~akll~e~a~~q 83 (546)
T 3p9d_F 5 LLNPKAESLRR-DAALKVNVTSAEGLQSVLETNLGPKGTLKMLVDGAGNIKLTKDGKVLLTEMQIQSPTAVLIARAAAAQ 83 (546)
T ss_dssp SSCTTEEEEEH-HHHHHHHHHHHTHHHHHHTTTSSTTCCEEEEECTTSCEEEECCHHHHHHTSCCCCHHHHHHHHHHHHH
T ss_pred ccCCCcchhhH-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCEEEECCHHHHHHHccCcCHHHHHHHHHHHHH
Confidence 35666777777 48999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcc
Q 008377 93 QEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASK 172 (568)
Q Consensus 93 ~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk 172 (568)
++++||||||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++++.. .+..|++.|.++++|+++||
T Consensus 84 d~e~GDGTTtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~--~~~~~~~~L~~vA~tsl~sK 161 (546)
T 3p9d_F 84 DEITGDGTTTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKT--NLSNDREFLLQVARSSLLTK 161 (546)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCS--SSSTTCHHHHHHHHHHTCST
T ss_pred HHHhCCCcccHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhhcccc--ccccCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999999999999988631 12257899999999999999
Q ss_pred cc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC--CCcccccCceEEEEeeccc
Q 008377 173 QF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVD 249 (568)
Q Consensus 173 ~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le 249 (568)
+. .+.++|++++++|+..+.++....+|+++|+|++++||+..||++++|++|++++. .||+.++||||++++|+|+
T Consensus 162 i~~~~~d~la~l~vdaV~~V~~~~~~~~dl~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le 241 (546)
T 3p9d_F 162 VDADLTEVLTPIVTDAVLSVYDAQADNLDLHMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLE 241 (546)
T ss_dssp THHHHCSSHHHHHHHHHHHTHHHHHTTCCGGGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSS
T ss_pred cchhHHHHHHHHHHHhheEeecCCCCcccchheEEEEecCCCccccEEEeeEEEecccccccCcceecCceEEEecCccc
Confidence 74 56899999999999998643223588999999999999999999999999998874 5899999999999999999
Q ss_pred cccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcC----------CcEEEecCCccHHHHHHHHhCCeEEEEeCC
Q 008377 250 TSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESG----------AEVIVSGAAVGEMALHFCERYKLMVLKISS 319 (568)
Q Consensus 250 ~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~----------v~vVl~~~~I~~~al~~l~~~~I~vv~~v~ 319 (568)
+++++.++++.+++++++..+++.|++++++++++|...+ ++|||++++|++.+++||.++||+++++++
T Consensus 242 ~~k~e~~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~ 321 (546)
T 3p9d_F 242 YEKTEVNSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAK 321 (546)
T ss_dssp SCCCSSCBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCC
T ss_pred ccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceEEEecCcCcHHHHHHHHHCCCeeEecCC
Confidence 9999999999999999999999999999999999998754 239999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHH
Q 008377 320 KFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVN 399 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~ 399 (568)
+.+|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++|++ +..+||+|||+|+.+++|.||+++||++
T Consensus 322 ~~~leria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~~~~~~i~g~~~-~~~~tI~lrG~te~~l~E~kr~l~DAl~ 400 (546)
T 3p9d_F 322 RRNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTD-PKSCTILIKGSTHYALAQTKDAVRDGLR 400 (546)
T ss_dssp HHHHHHHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSSCCCEECSSCSC-CSCEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEecchhhCCHhHCCcccEEEEEEecCceEEEEecCCC-CceEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 8899999999999999999999999999
Q ss_pred HHHHHHhCCCcccCCChHHHHHHHHHHh---hhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhC-
Q 008377 400 TYKAMCRDSRIVPGAAATEIELARRLKE---FSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHAS- 475 (568)
Q Consensus 400 ~l~~~~~~~~vvpGGG~~E~~ls~~L~~---~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~- 475 (568)
++|+++++|++|||||++|+++|.+|++ ++.+.++.+|+++++||+||+.||++|++|||+|+.+++.+|++.|.+
T Consensus 401 ~~r~av~~~~iVpGGGa~e~~~s~~L~~~~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~~v~~l~~~h~~~ 480 (546)
T 3p9d_F 401 AVANVLKDKNIIPGAGAFYIALSRYLRSANMNKLGAKGKTKTGIEAFAEALLVIPKTLVKNSGFDPLDVLAMVEDELDDA 480 (546)
T ss_dssp HHHHHTTSCCEEETTTHHHHHHHHHHHHHHTTTTTTTSHHHHHHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhcCCcEEeCCCHHHHHHHHHHHhhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999 588899999999999999999999999999999999999999999873
Q ss_pred ----CCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCc
Q 008377 476 ----GKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLI 529 (568)
Q Consensus 476 ----~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~ 529 (568)
++.++|||+.+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..++
T Consensus 481 ~~~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~~~a~~iL~iD~ii~~~~ 538 (546)
T 3p9d_F 481 QDSDETRYVGVDLNIGDSCDPTIEGIWDSYRVLRNAITGATGIASNLLLCDELLRAGR 538 (546)
T ss_dssp TTSTTSSCCCCBTTTTBCCCSGGGTCEEEHHHHHHHHHHHHHHHHHHHTEEEEEEECC
T ss_pred hcccCCceeeEeCCCCeecchHhccCEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 456799999999999999999999999999999999999999999999998865
No 21
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b*
Probab=100.00 E-value=1.4e-106 Score=884.84 Aligned_cols=510 Identities=24% Similarity=0.407 Sum_probs=481.5
Q ss_pred cccccccccccChHHHHHHHHHHHHHHHHHhhhccCCCCCceeeEc-CCCCeEEeccHHHHHhhccccChHHHHHHHHHH
Q 008377 12 SMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN-HLDKLFVTNDAATIVNELEVQHPAAKLLVLAGK 90 (568)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~-~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~ 90 (568)
.+|+++....+| .+++.+|+.||+.|+++|||||||+||+|||++ +.|+++|||||+|||++|+++||+|+|++++|+
T Consensus 4 ~~l~~~~~~~~g-~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~~G~~~iTnDG~tIlk~i~~~hP~Akll~e~a~ 82 (527)
T 3p9d_B 4 QIFGDQVTEERA-ENARLSAFVGAIAVGDLVKSTLGPKGMDKLLQSASSNTCMVTNDGATILKSIPLDNPAAKVLVNISK 82 (527)
T ss_dssp CSSCSCEEEEES-HHHHHHHHHHHHHHHHHHHSCSSSSCCEEEEECTTTCCEECCCCHHHHHHTCCCCCHHHHHHHHHHH
T ss_pred ehhcCcchhhhh-HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEecCCCCeEEeCCHHHHHHHhccCCHHHHHHHHHHH
Confidence 358888888888 499999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred HhhhhccCchhHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCC---HHHHHHHHH
Q 008377 91 AQQEEIGDGANLTISFAGEILQGAEELIRM-GLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRN---TEEVIYRMK 166 (568)
Q Consensus 91 ~~~~~~GDGttt~vlL~~~Ll~~a~~li~~-gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~---~~~l~~i~~ 166 (568)
+|++++||||||++|||++||+++.+++.+ |+||+.|++||+.|.+.++++|++++++. +.++ ++.|.++++
T Consensus 83 ~qd~~~GDGTTtavVLA~~Ll~ea~~lv~~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v----~~~~~~~~~~l~~vA~ 158 (527)
T 3p9d_B 83 VQDDEVGDGTTSVTVLSAELLREAEKLIDQSKIHPQTIIEGYRLASAAALDALTKAAVDN----SHDKTMFREDLIHIAK 158 (527)
T ss_dssp HHHHHTCSCTTTTTHHHHHHHHHHHHHTC---CCHHHHHHHHHHHHHHHHHHHHHTCBCC----CCCHHHHHHHHHHHHH
T ss_pred HhHhhhCCcHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCccC----CCcchhhHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999999999998762 2222 789999999
Q ss_pred Hhhhcccc-CcccchHHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCCC-CcccccCceEEEE
Q 008377 167 AAVASKQF-GQEEILCPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAVG-SIKNMEKAKVAVF 244 (568)
Q Consensus 167 t~l~sk~~-~~~~~ls~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~~-~~~~i~n~kIlll 244 (568)
|+++||+. .++++|++++++|+.++++++ |++.|+|.++.||++.||++++|++|++++.+ +|++++||||+++
T Consensus 159 tSl~sK~~~~~~~~i~~li~dAv~~V~~~~----~~~~I~V~k~~gg~~~ds~lv~G~~~dk~~~~~~p~~~~n~kIlll 234 (527)
T 3p9d_B 159 TTLSSKILSQDKDHFAELATNAILRLKGST----NLEHIQIIKILGGKLSDSFLDEGFILAKKFGNNQPKRIENAKILIA 234 (527)
T ss_dssp HHHTTSGGGGGHHHHHHHHHHHHHTTCTTC----CTTSSCCCBCCCSSSSCCCEESSCCCSCCCSSSCCSCCSSCEEEEE
T ss_pred hccccCcccchHHHHHHHHHHHHHHhcccC----CcceEEEEEcCCCCccccEEEEeEEEecccCCCCCeeeecceEEEe
Confidence 99999974 567899999999999998653 56789999999999999999999999999854 3889999999999
Q ss_pred eecccccccc-ccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHH
Q 008377 245 AGGVDTSATE-TKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFEL 323 (568)
Q Consensus 245 ~~~Le~~~~~-~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~L 323 (568)
+++|++++++ +++++.+++++++.++.+.|+++++.++++|.+.|++||+++++|++.+++||.++||++++++++.+|
T Consensus 235 ~~~le~~k~~~~~~~v~i~~~~~l~~~~~~E~~~l~~~l~~I~~~g~~vvi~~~~I~~~al~~L~~~~i~av~~~~~~dl 314 (527)
T 3p9d_B 235 NTTLDTDKVKIFGTKFKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHADFEGV 314 (527)
T ss_dssp CSCSSCCCCSSCCCBCCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCBEEESSCCCTTTHHHHHHHTCBCCCCCCHHHHH
T ss_pred ccccccccccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHCCCEEEecCCHHHH
Confidence 9999999999 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHH
Q 008377 324 RRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKA 403 (568)
Q Consensus 324 e~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~ 403 (568)
+|+|++|||++++++++++++++|+|+.|+++.+|+++|++|++|+. ++++||+|||+|+.+++|.||+++||++++|+
T Consensus 315 e~ia~~tGa~iv~~~~~~~~~~LG~a~~v~~~~ig~~~~~~~~g~~~-~~~~tI~lrg~te~~l~E~kr~i~DAl~~~r~ 393 (527)
T 3p9d_B 315 ERLALVTGGEVVSTFDEPSKCKLGECDVIEEIMLGEQPFLKFSGCKA-GEACTIVLRGATDQTLDEAERSLHDALSVLSQ 393 (527)
T ss_dssp HHHHHHTCCCCCSTTSCCTTSCEECSBCCBCCCSSSCCBCCBCSSCC-SCCEECBCCTTCTTHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhCCEEecchhhCCHHHCCCCcEEEEEEecceEEEEEECCCC-CCEEEEEEcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999984 88999999999999999999999999999999
Q ss_pred HHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEe
Q 008377 404 MCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGID 483 (568)
Q Consensus 404 ~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid 483 (568)
++++|++|||||++|++++.+|++++.+.++.+|+++++||+||+.||++|++|||+|+.+++++|++.|.+++.++|||
T Consensus 394 av~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~~~~~~G~d 473 (527)
T 3p9d_B 394 TTKETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTSGLD 473 (527)
T ss_dssp HHHCCCEEETTTHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHTCSCCCCC
T ss_pred HHhcCCcccCCcHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCCCceeEE
Confidence 99999999999999999999999999888999999999999999999999999999999999999999998777889999
Q ss_pred ccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhcCccC
Q 008377 484 LENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKDLIIN 531 (568)
Q Consensus 484 ~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~~~~~ 531 (568)
..+|++.||++.|||||+.||+++|+.|+|+|++|||||++|..+|.+
T Consensus 474 ~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~id~ii~~~~~~ 521 (527)
T 3p9d_B 474 LNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRT 521 (527)
T ss_dssp SSSTTCCCHHHHTCEEETTHHHHHHHHHHHHHHHHHHCCEEEEEC---
T ss_pred CCCCCCcchHhccCEEcHHHHHHHHHHHHHHHHHHHhHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999987633
No 22
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=100.00 E-value=2.1e-101 Score=838.05 Aligned_cols=471 Identities=29% Similarity=0.498 Sum_probs=380.5
Q ss_pred eeEcCCCCeEEeccHHHHHhhccccChHHHHHHHHHHHhhhhccCchhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Q 008377 54 MVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTK 133 (568)
Q Consensus 54 mi~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~~~~~~~~~GDGttt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~ 133 (568)
||+++.|+++|||||+|||++|+++||+|+|++++|++|++++||||||+++||++||+++.+++++|+||+.|++||+.
T Consensus 1 mlv~~~G~~~iTnDG~tIlk~i~v~hP~Akll~e~a~~qd~e~GDGTTtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~ 80 (500)
T 3aq1_B 1 MLVDSMGDIVITNDGATILKEMDIQHPAAKMIVEVSKTQDAEVGDGTTTAAVLSGELLSKAEELIMKGVHSTIISEGYRH 80 (500)
T ss_dssp ------------------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CccCCCCCeEEECcHHHHHHhCcCCCHHHHHHHHHHHhhhhhhCCChHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhcccc-CcccchHHHHHHHHHHhcCC--CCCccc-ccceEEEEc
Q 008377 134 AINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQVCPK--NPANFN-VDNVRVAKL 209 (568)
Q Consensus 134 a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~-~~~~~ls~lv~~a~~~~~~~--~~~~~~-l~~I~I~k~ 209 (568)
|++.+++.|++++++ ++..|++.|.++++|+++||+. +++++|++++++|+.+++++ +..++| +++|+|+++
T Consensus 81 A~~~a~~~L~~~s~~----v~~~d~~~l~~va~tsl~sKi~~~~~~~i~~li~dAv~~v~~~~~g~~~~di~~~I~V~k~ 156 (500)
T 3aq1_B 81 AAEKCREILETITIA----ISPDDEAALIKIAGTAITGKGAEAYKEKLSALTVKAVRSIVEEEEDGLKVNVLENIKIEKR 156 (500)
T ss_dssp HHHHHHHHHHHHCEE----CCTTCHHHHHHHHHTTCCSSSTTSSHHHHHHHHHHHHTTSEECCSSSCEECHHHHEEEEEE
T ss_pred HHHHHHHHHHHhcCC----CCCCcHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhcccccCCccccccccEEEEEe
Confidence 999999999999886 2456799999999999999975 57899999999999999765 333578 789999999
Q ss_pred cCCCcccceeEeeEEEeecC--CCCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHh
Q 008377 210 LGGGLHNSTIVRGMVLKSDA--VGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAE 287 (568)
Q Consensus 210 ~Gg~~~dS~li~Givl~~~~--~~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~ 287 (568)
+||+++||++++|++|++++ ..||+.++||||++++++|++++++.++++.++++++++++.++|+++++.++++|.+
T Consensus 157 ~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~~v~i~~~~~l~~~~~~E~~~l~~~le~I~~ 236 (500)
T 3aq1_B 157 AGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKITSPGQMQLFLDQEEKMMREMAEKVIA 236 (500)
T ss_dssp ESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------------------------CHHHHHHHHHHT
T ss_pred cCCCccceEEEeeeEEeecCCCCCCcccccCCEEEEEeCCccccccccceeEeeCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 4589999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEe
Q 008377 288 SGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRN 367 (568)
Q Consensus 288 ~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~ 367 (568)
.|+||||++++|++.+++||.++||++++++++++|+|||++|||++++++++++++++|+|+.|++.++|+++|++|++
T Consensus 237 ~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~~~~~~~LG~a~~v~~~~ig~~~~~~~~g 316 (500)
T 3aq1_B 237 SGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLVEEKEVRGGKMTYVTG 316 (500)
T ss_dssp TCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSCTTCCCSTTCEEEEEEEEEECSSSEEEEEEE
T ss_pred hCcCEEEECCCcCHHHHHHHHHCCEEEEEeCCHHHHHHHHHHhCCeEecccccCCHhHCCCceEEEEEEecCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHHHHHHHH
Q 008377 368 EGGGNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIAKFAESF 447 (568)
Q Consensus 368 ~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~~~a~aL 447 (568)
|++ ++.+||+|||+|+.+++|.||+++||++++|+++++|++|||||++|++++.+|++++.+.++.+|+++++||+||
T Consensus 317 ~~~-~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~~~~~iVpGGGa~e~~~~~~L~~~~~~~~g~~q~~i~~~a~AL 395 (500)
T 3aq1_B 317 CQN-SKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVIEDGKVVVGGGSSEVELSLRLSEYASTLKGREQLAVSKFAEAL 395 (500)
T ss_dssp ETT-CCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHHSEEEETTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CCC-CceEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHH
Confidence 984 8999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhchhHHhhc
Q 008377 448 EMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRVDQVLKD 527 (568)
Q Consensus 448 ~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~iD~ii~~ 527 (568)
+.||++|++|||+|+.+++++|++.|.+++.++|+|..+|++.||.+.|||||+.||+++|+.|+|+|++|||||++|..
T Consensus 396 e~ip~~La~NaG~d~~~~v~~l~~~h~~~~~~~G~d~~~g~~~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~iD~iI~~ 475 (500)
T 3aq1_B 396 EVIPVALAENAGLDPIDIMVELRSQHEKGNKNAGLNVYTGEVVDMWENDVIEPLRIKTQAINAAMEATVMILRIDDVVAS 475 (500)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHHHTTCTTEEECTTTCCEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCeeEeCCCCCccchHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877778999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q 008377 528 LI 529 (568)
Q Consensus 528 ~~ 529 (568)
+|
T Consensus 476 ~~ 477 (500)
T 3aq1_B 476 KG 477 (500)
T ss_dssp --
T ss_pred Cc
Confidence 76
No 23
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a*
Probab=100.00 E-value=2.1e-92 Score=771.56 Aligned_cols=454 Identities=20% Similarity=0.291 Sum_probs=419.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kmi~~~~g~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (543)
T 1we3_A 9 EAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGT 88 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHcccCChHHhHHHHHHHHHHHhhheecCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||++||+++||+++.+++.+|+||+.|++||+.|++.+++.|++++.+ ..+++.|.++++++++ ++++
T Consensus 89 TtvvVLA~~LL~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~~~l~~vA~iS~~------~~~i 156 (543)
T 1we3_A 89 TTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIP------VEDRKAIEEVATISAN------DPEV 156 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTCBC------CCSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHhhhhhcC------CHHH
Confidence 999999999999999999999999999999999999999999999875 2378899999988764 5789
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccc-eeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++ .|.|. .|++++|| ++++|++|++++. .|++.++||||++++++
T Consensus 157 ~~li~dAv~~V~~~g-------~I~Ve--~G~~~~ds~~lv~G~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~--- 224 (543)
T 1we3_A 157 GKLIADAMEKVGKEG-------IITVE--ESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK--- 224 (543)
T ss_dssp HHHHHHHHHTTCTTS-------EEEEE--ECSSSSCEEEEECSEEESCCBSSGGGCSBTTTTBCCEEEEEEEEESSC---
T ss_pred HHHHHHHHHHhCcCC-------cEEEe--cCCccccceEEEcCEEEecCccccccccCcccCceeecCceEEEECCC---
Confidence 999999999987543 25554 89999998 9999999999862 36777999999999986
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHh------CCeEEEE-----eCC
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~------~~I~vv~-----~v~ 319 (568)
+++++++.+ +++++.+.|+||||++++|++.++++|.. .+|++|+ +++
T Consensus 225 ----------Is~~~~l~~-----------~le~i~~~g~~lvii~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 283 (543)
T 1we3_A 225 ----------VSNVRELLP-----------ILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRR 283 (543)
T ss_dssp ----------BCCHHHHHH-----------HHHHHHTTTCCEEEEESCBCHHHHHHHHHHHHHTSCCEEEEECSSSHHHH
T ss_pred ----------cCCHHHHHH-----------HHHHHHhcCCCEEEEcCCccHHHHHHHHHhccccceeEEEEeccchhhhh
Confidence 456677654 68889999999999999999999999987 6789999 556
Q ss_pred hhHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC------------------------
Q 008377 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (568)
+++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|++
T Consensus 284 ~~~le~ia~~tGa~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 360 (543)
T 1we3_A 284 KEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRI---TKDETTIVGGKGKKEDIEARINGIKKELETTDSEYAR 360 (543)
T ss_dssp HHHHHHHHHHHCCCCBCTTTTCCGGGCCGGGCEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCceeeccccCCcccCCHHHCCCceEEEE---EcCEEEEEcCCCCHHHHHHHHHHHHHHhhccCchhHH
Confidence 788999999999999996 89999999999999976 4689999999863
Q ss_pred ----------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 371 ----------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
.++.+||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++.+.++.+|+++
T Consensus 361 e~l~erlakl~~~~~tI~lrG~te~~l~E~~r~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~~~~g~~q~~i 439 (543)
T 1we3_A 361 EKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEG-IVPGGGVTLLRAISAVEELIKKLEGDEATGA 439 (543)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhccC-cCCCccHHHHHHHHHHHHHhhccCchHHHHH
Confidence 13789999999999999999999999999999999999 9999999999999999999988899999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++.|. +.++|+|..+|++.||++.|||||+.||+++|+.|+|+|++|||
T Consensus 440 ~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~--~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~e~a~~iL~ 517 (543)
T 1we3_A 440 KIVRRALEEPARQIAENAGYEGSVIVQQILAETK--NPRYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILT 517 (543)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHCCS--CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhcC--CCCEEEeCCCCeecccccCCcCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999873 56799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCc
Q 008377 521 VDQVLKDLI 529 (568)
Q Consensus 521 iD~ii~~~~ 529 (568)
||++|..+|
T Consensus 518 id~iI~~~~ 526 (543)
T 1we3_A 518 TEAVVAEKP 526 (543)
T ss_dssp EEEEEEECS
T ss_pred HHHHhhcCC
Confidence 999999877
No 24
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ...
Probab=100.00 E-value=8.8e-92 Score=765.51 Aligned_cols=453 Identities=19% Similarity=0.302 Sum_probs=417.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++.+|+.||..|+++|++||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 9 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 88 (547)
T 1kp8_A 9 NDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGT 88 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhhccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||++||+++||+++.+++.+|+||+.|++||+.|.+.+++.|++++.+ ..+++.|.++++++++ ++++|
T Consensus 89 TtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~e~l~~vA~iS~~-----~~~~i 157 (547)
T 1kp8_A 89 TTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVP------CSDSKAIAQVGTISAN-----SDETV 157 (547)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBC------CCSHHHHHHHHHHHTT-----SCHHH
T ss_pred chhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcC------CCCHHHHHHHHHHhcc-----chhHH
Confidence 999999999999999999999999999999999999999999999875 2368899999988764 36899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccc-eeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++ .|.|. .|++++|| ++++|++|++++. .|++.++||||++++++
T Consensus 158 ~~liadAv~~V~~dg-------~I~Ve--~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~--- 225 (547)
T 1kp8_A 158 GKLIAEAMDKVGKEG-------VITVE--DGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKK--- 225 (547)
T ss_dssp HHHHHHHHHHHCTTS-------EEEEE--CCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESE---
T ss_pred HHHHHHHHHHhCcCC-------cEEEE--eCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCc---
Confidence 999999999997643 25554 89999999 9999999999863 36777999999999997
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHh------CCeEEEE-----eCC
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~------~~I~vv~-----~v~ 319 (568)
+++++++.+ +++++.+.|+||||++++|++.++++|.. .+|++|+ +++
T Consensus 226 ----------Is~~~~l~~-----------~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~r 284 (547)
T 1kp8_A 226 ----------ISNIREMLP-----------VLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRR 284 (547)
T ss_dssp ----------ECCGGGTHH-----------HHHHHHGGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHH
T ss_pred ----------CCCHHHHHH-----------HHHHHHhcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEecccccccc
Confidence 456666654 68889999999999999999999999987 5789999 556
Q ss_pred hhHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC-----------------------
Q 008377 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG----------------------- 371 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~----------------------- 371 (568)
+++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|++.
T Consensus 285 k~~le~ia~~tG~~ii~~~~g~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 361 (547)
T 1kp8_A 285 KAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVI---NKDTTTIIDGVGEEAAIQGRVAQIRQQIEEATSDYDR 361 (547)
T ss_dssp HHHHHHHHHHHTCCCEEGGGTCCSTTCCTTTSEEEEEEEE---CSSCEEEEEECCCHHHHHHHHHHHHHHHHSCCSHHHH
T ss_pred HHHHHHHHHHhCCeEecccccCCcccCCHHHCCceeEEEE---ccceEEEEcCCCCHHHHHHHHHHHHHHhhcccchhhH
Confidence 788999999999999996 99999999999999976 46899999998631
Q ss_pred -----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 372 -----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 372 -----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
++++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++.+|+++
T Consensus 362 ekl~erlakl~~~~~tI~vrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i 439 (547)
T 1kp8_A 362 EKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEG-VVAGGGVALIRVASKLADLRG-QNADQNVGI 439 (547)
T ss_dssp HHHHHHHHHHHHCEEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHHHHTTTCCC-SSHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHHHHHHHHHHHHHhccCC-EEeCCcHHHHHHHHHHHHHhc-cCchHHHHH
Confidence 2689999999999999999999999999999999999 999999999999999999877 788999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++. +.++|||..+|++.||++.|||||+.||+++|+.|+|+|++|||
T Consensus 440 ~~~a~ALe~ip~~la~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~dm~~~gI~Dp~~vk~~al~~A~~~A~~iL~ 515 (547)
T 1kp8_A 440 KVALRAMEAPLRQIVLNCGEEPSVVANTVKGG----DGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMIT 515 (547)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHS----CTTEEEETTTTEEEETTTTTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhc----CCCEeEeCCCCccccchhcCceechHhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999864 46799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCcc
Q 008377 521 VDQVLKDLII 530 (568)
Q Consensus 521 iD~ii~~~~~ 530 (568)
+|++|..+|.
T Consensus 516 id~iI~~~~~ 525 (547)
T 1kp8_A 516 TECMVTDLPK 525 (547)
T ss_dssp EEEEEEECCC
T ss_pred HhheeecCCc
Confidence 9999998773
No 25
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1
Probab=100.00 E-value=9.1e-93 Score=773.87 Aligned_cols=454 Identities=20% Similarity=0.289 Sum_probs=388.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccCh----HHHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHP----AAKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP----~a~ll~~~~~~~~~~~GDGt 100 (568)
.+++.+|+.||..|+++|+|||||+||+|||+++.|+++|||||+|||++|+++|| +|+|+++++++|++++||||
T Consensus 10 ~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~g~~~iTnDG~tIlk~i~~~hp~en~~Akll~e~a~~qd~e~GDGT 89 (545)
T 1iok_A 10 SDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVREVASRTNDEAGDGT 89 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHGGGGCSTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECCCCCeEEeCCHHHHHHHhccCChhhHHHHHHHHHHHHhhccccCCCc
Confidence 48999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||++||+++||+++.+++.+|+||+.|++||+.|.+.+++.|++++.+ ..+++.|.++++++++ ++++|
T Consensus 90 TtvvVLA~~Ll~ea~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~------v~~~e~l~~va~iS~~-----~~~~i 158 (545)
T 1iok_A 90 TTATVLAQAIVREGLKAVAAGMNPMDLKRGIDVATAKVVEAIKSAARP------VNDSSEVAQVGTISAN-----GESFI 158 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCBC------CCSTTTTTHHHHHTTT-----TCHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCCHHHHHHHHHhhcC-----CchhH
Confidence 999999999999999999999999999999999999999999999875 2356788999987764 36899
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccc-eeEeeEEEeecCC---------CCcccccCceEEEEeecccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNS-TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDT 250 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS-~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~ 250 (568)
++++++|+.++++++. |.|. .|++++|| ++++|++|++++. .|++.++||||++++++++
T Consensus 159 ~~li~dAv~~V~~~g~-------I~Ve--~G~~~~ds~~lveG~~~dkg~~~p~~vt~~~~m~~~~en~~Ill~d~~I~- 228 (545)
T 1iok_A 159 GQQIAEAMQRVGNEGV-------ITVE--ENKGMETEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLS- 228 (545)
T ss_dssp HHHHHHHHHHHCTTSC-------CCCE--ECSSSCCEEEEECCEECSCCCSCGGGCCCSSSSCEEEEEEEEEECSSCBC-
T ss_pred HHHHHHHHHHhccCCe-------EEEE--eCCccccceEEEecEEEecCccccccccCcccCceeecCCeEEEEcCCcC-
Confidence 9999999999976542 3333 79999999 9999999999863 3677899999999999753
Q ss_pred ccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHh------CCeEEEE-----eCC
Q 008377 251 SATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCER------YKLMVLK-----ISS 319 (568)
Q Consensus 251 ~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~------~~I~vv~-----~v~ 319 (568)
+++++.+ +++++.+.|+||||++++|++.++++|.. .+|++|+ +++
T Consensus 229 ------------~~~~l~~-----------~le~i~~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~~ 285 (545)
T 1iok_A 229 ------------SLQPMVP-----------LLESVIQSQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRR 285 (545)
T ss_dssp ------------CCCC----------------------CCCCEEEESCBC-----------------CEEEECSCCTTHH
T ss_pred ------------CHHHHHH-----------HHHHHHhcCCCEEEECCCcCHHHHHHHHHccccccceeEEEecchhhhcc
Confidence 4445443 67888999999999999999999999987 4668888 667
Q ss_pred hhHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC------------------------
Q 008377 320 KFELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG------------------------ 370 (568)
Q Consensus 320 ~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~------------------------ 370 (568)
+++|+|||++|||+++++ +++++++++|+|+.|++ +.+++++|++|++
T Consensus 286 ~~~le~ia~~tGa~ii~~~~~~~l~~~~~~~LG~a~~v~~---~~~~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~ 362 (545)
T 1iok_A 286 KAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSI---NKDNTTIVDGAGEKAEIEARVSQIRQQIEETTSDYDR 362 (545)
T ss_dssp HHHHHHHHHHHTC---------------CTTSEEEEEEEE---CSSCEEEESCCCCHHHHHHHHHHHHHHHTTCCCSSHH
T ss_pred HHHHHHHHHhcCCeeecccccCCcccCCHHHcCcCcEEEE---ecCEEEEEeCCCCHHHHHHHHHHHHHHHhccCchhhH
Confidence 789999999999999996 99999999999999976 4589999999863
Q ss_pred ----------CCceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHH
Q 008377 371 ----------GNSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAI 440 (568)
Q Consensus 371 ----------~~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~ 440 (568)
.++++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++. .++.+|+++
T Consensus 363 ekl~erlakl~~~~~tI~lrG~te~~l~E~kr~i~DAl~~~r~av~~g-iVpGGGa~e~~~s~~L~~~~~-~~g~~q~~i 440 (545)
T 1iok_A 363 EKLQERVAKLAGGVAVIRVGGMTEIEVKERKDRVDDALNATRAAVQEG-IVVGGGVALVQGAKVLEGLSG-ANSDQDAGI 440 (545)
T ss_dssp HHHHHHHHTTSSCEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHHHGGGGGSCCC-SSHHHHHHH
T ss_pred HHHHHHHHhccCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHHHhc-cCchHHHHH
Confidence 13789999999999999999999999999999999999 999999999999999999877 788999999
Q ss_pred HHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhc
Q 008377 441 AKFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLR 520 (568)
Q Consensus 441 ~~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~ 520 (568)
++|++||+.||++|++|||+|+.+++++|++.| +.++|+|..+|++.||++.|||||+.||+++|+.|+|+|++|||
T Consensus 441 ~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~~---~~~~G~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~A~~iL~ 517 (545)
T 1iok_A 441 AIIRRALEAPMRQIAENAGVDGAVVAGKVRESS---DKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLIT 517 (545)
T ss_dssp HHHHHHTTHHHHHHHHHHTSCHHHHHHHHHSCC---STTEEEETTTTEEEEHHHHTCEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhc---CCCeeEeCCCCcccchHhcCcEEccHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999766 46799999999999999999999999999999999999999999
Q ss_pred hhHHhhcCcc
Q 008377 521 VDQVLKDLII 530 (568)
Q Consensus 521 iD~ii~~~~~ 530 (568)
||++|...|.
T Consensus 518 id~iI~~~~~ 527 (545)
T 1iok_A 518 TEAMIAEKPE 527 (545)
T ss_dssp EEEEEEECC-
T ss_pred HHHhhccCCc
Confidence 9999998773
No 26
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A
Probab=100.00 E-value=8.1e-92 Score=763.76 Aligned_cols=452 Identities=22% Similarity=0.262 Sum_probs=347.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCceeeEcCCCCeEEeccHHHHHhhccccChH----HHHHHHHHHHhhhhccCch
Q 008377 25 DEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPA----AKLLVLAGKAQQEEIGDGA 100 (568)
Q Consensus 25 ~~~~~~ni~~~~~l~~~v~sslGP~G~~Kmi~~~~g~~~iTnDG~tIl~~l~~~hP~----a~ll~~~~~~~~~~~GDGt 100 (568)
++++..|+.||+.|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+ |+|+++++++|++++||||
T Consensus 9 ~~ar~~~~~~~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hp~~n~gAkll~e~a~~qd~e~GDGT 88 (546)
T 3rtk_A 9 EEARRGLERGLNALADAVKVTLGPKGRNVVLEKKWGAPTITNDGVSIAKEIELEDPYEKIGAELVKEVAKKTDDVAGDGT 88 (546)
T ss_dssp ----------------------------------------------------CCCHHHHHHHHHHHHHHTSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEECcHHHHHHHccCCChhhhHHHHHHHHHHHhhhhhhCCCc
Confidence 489999999999999999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCHHHHHHHHHHhhhccccCcccch
Q 008377 101 NLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTIEVLEELVEEGSENMDVRNTEEVIYRMKAAVASKQFGQEEIL 180 (568)
Q Consensus 101 tt~vlL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~d~~~~~~l~~i~~t~l~sk~~~~~~~l 180 (568)
||++||+++||+++.+++++|+||+.|++||+.|.+.++++|++++.+ ..+++.|.++++++++ ++++
T Consensus 89 TtvvVLAgeLL~ea~~li~~GihP~~I~~G~~~A~~~a~e~L~~~s~~------v~~~e~L~~vA~iS~~------~~~i 156 (546)
T 3rtk_A 89 TTATVLAQALVREGLRNVAAGANPLGLKRGIEKAVEKVTETLLKGAKE------VETKEQIAATAAISAG------DQSI 156 (546)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTCBC------CCSHHHHHHHHHHHHT------CHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccc------CCChHHHHhHeEEeCC------chHH
Confidence 999999999999999999999999999999999999999999999875 2378899999998875 4689
Q ss_pred HHHHHHHHHHhcCCCCCcccccceEEEEccCCCcccceeEeeEEEeecCC---------CCcccccCceEEEEeeccccc
Q 008377 181 CPLIADACIQVCPKNPANFNVDNVRVAKLLGGGLHNSTIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTS 251 (568)
Q Consensus 181 s~lv~~a~~~~~~~~~~~~~l~~I~I~k~~Gg~~~dS~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~ 251 (568)
++++++|+.++++++ .|.|.+.. +...||++++|++|++++. .|++.++||||++++++
T Consensus 157 ~~liadAv~~V~~dg-------vI~Ve~~~-~~~~ds~lveGm~fdkg~~sp~~vt~~e~m~~~len~kIll~d~k---- 224 (546)
T 3rtk_A 157 GDLIAEAMDKVGNEG-------VITVEESN-TFGLQLELTEGMRFDKGYISGYFVTDPERQEAVLEDPYILLVSSK---- 224 (546)
T ss_dssp HHHHHHHHHHSCTTS-------EEEEECCS-SSSCEEEEECEEEESCCBSSGGGCSBTTTTBEEEESCEEEEBSSE----
T ss_pred HHHHHHHHHHhccCC-------ceEEEecC-CcccceEEeeeEEEcCCccCcccccCcccCeeEecccEEEEECCc----
Confidence 999999999997643 25666533 5567899999999998862 57889999999999986
Q ss_pred cccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCccHHHHHHHHhC------CeEEEEeCC-----h
Q 008377 252 ATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGAAVGEMALHFCERY------KLMVLKISS-----K 320 (568)
Q Consensus 252 ~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~~I~~~al~~l~~~------~I~vv~~v~-----~ 320 (568)
+++++++.+ +++++.+.|+||||++++|++.++++|..+ ++++|+.+. +
T Consensus 225 ---------Is~~~~l~~-----------~le~I~~~g~~lvIi~~~I~~~Al~~L~~n~lrg~~~v~aVk~~~~~~~rk 284 (546)
T 3rtk_A 225 ---------VSTVKDLLP-----------LLEKVIGAGKPLLIIAEDVEGEALSTLVVNKIRGTFKSVAVKAPGFGDRRK 284 (546)
T ss_dssp ---------ECCSTTTHH-----------HHHHHHTTTCCEEEEESEECHHHHHHHHHHHHHSSCCEEEEECSSCHHHHH
T ss_pred ---------cCCHHHHHH-----------HHHHHHhcCCCEEEEcCCCCHHHHHHHHHhCCCCceEEEEeccccccccch
Confidence 556667655 678999999999999999999999999864 478887665 5
Q ss_pred hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCCC------------------------
Q 008377 321 FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGGG------------------------ 371 (568)
Q Consensus 321 ~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~------------------------ 371 (568)
.+|+|||++|||++++ ++++++++++|+|+.|+ ++.+++++|++|++.
T Consensus 285 ~~le~ia~~tG~~ii~~~~~~~l~~~~~~~LG~a~~v~---i~~d~~~~i~g~~~~~~i~~r~~~i~~~~~~~~s~~~~e 361 (546)
T 3rtk_A 285 AMLQDMAILTGGQVISEEVGLTLENADLSLLGKARKVV---VTKDETTIVEGAGDTDAIAGRVAQIRQEIENSDSDYDRE 361 (546)
T ss_dssp HHHHHHHHHHTCCCBCSSSSCCSTTCCTTTSEEEEEEE---ECSSCEEEEEECSCHHHHHHHHHHHHHHHHTCSCHHHHH
T ss_pred hhHHHHHHHhCCEEeeccccCccccCCHhhCCeeEEEE---EcCCeEEEEcCCCCHHHHHHHHHHHHHHHhhccchhhHH
Confidence 7899999999999999 58999999999999996 578899999998631
Q ss_pred ----------CceEEEEEcCCChhHHHHHHHHHhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHhhhccccchhHHHHH
Q 008377 372 ----------NSVSTVVLRGSTDSILDDLERAVDDGVNTYKAMCRDSRIVPGAAATEIELARRLKEFSFKETGLDQYAIA 441 (568)
Q Consensus 372 ----------~~~~TIllrG~t~~~l~e~~r~i~dal~~l~~~~~~~~vvpGGG~~E~~ls~~L~~~~~~~~~~~q~~~~ 441 (568)
+.++||+|||+|+.+++|.||+++||++++|+++++| +|||||++|++++.+|++++ .++.+|++++
T Consensus 362 kl~erlakl~g~~atI~vrG~te~~l~E~er~l~DAl~a~r~av~~g-iVpGGGa~e~~~s~~L~~~~--~~g~eq~~i~ 438 (546)
T 3rtk_A 362 KLQERLAKLAGGVAVIKAGAATEVELKERKHRIEDAVRNAKAAVEEG-IVAGGGVTLLQAAPTLDELK--LEGDEATGAN 438 (546)
T ss_dssp HHHHHHHHHHHCEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHHHHC-EEETTTHHHHTTGGGSTTSC--CCTTHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHhCC-cccCCcHHHHHHHHHHHHhc--cccHHHHHHH
Confidence 2489999999999999999999999999999999999 99999999999999999987 7899999999
Q ss_pred HHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHhCCCCceeEeccCCcccccccCCccccHHHHHHHHHHHHHHHHHHhch
Q 008377 442 KFAESFEMVPKTLAENAGLNAMEIISSLYAEHASGKTKVGIDLENGVCADISTMNVWDLYVTKFFALKYAADAACTVLRV 521 (568)
Q Consensus 442 ~~a~aL~~ip~~L~~NaG~d~~~~~~~L~~~~~~~~~~~Gid~~~~~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~iL~i 521 (568)
+|++||+.||++|++|||+|+.+++++|++. ...+|||..+|++.||++.|||||+.||+++|+.|+|+|++|||+
T Consensus 439 ~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~----~~~~G~d~~~g~~~Dm~~~gI~dp~~vk~~al~~A~e~A~~iL~i 514 (546)
T 3rtk_A 439 IVKVALEAPLKQIAFNSGLEPGVVAEKVRNL----PAGHGLNAQTGVYEDLLAAGVADPVKVTRSALQNAASIAGLFLTT 514 (546)
T ss_dssp HHHHHTTHHHHHHHTTTTCCHHHHHHHHHHS----CTTEECCSSSCCCEETTTTTCEEEHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHhh----cCCEeEcCCCCcEeeHHHcCCEecHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999875 233899999999999999999999999999999999999999999
Q ss_pred hHHhhcCcc
Q 008377 522 DQVLKDLII 530 (568)
Q Consensus 522 D~ii~~~~~ 530 (568)
|++|..+|.
T Consensus 515 d~iI~~~~~ 523 (546)
T 3rtk_A 515 EAVVADKPE 523 (546)
T ss_dssp C--------
T ss_pred HHHHhcCCC
Confidence 999998773
No 27
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Probab=100.00 E-value=2.3e-36 Score=283.85 Aligned_cols=171 Identities=17% Similarity=0.366 Sum_probs=147.5
Q ss_pred cccceeEeeEEEeecCC--CCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 008377 214 LHNSTIVRGMVLKSDAV--GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (568)
Q Consensus 214 ~~dS~li~Givl~~~~~--~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~ 291 (568)
++||++++|++|++++. +||++++||||++++++|++++++.++++.++++++++++.+.|++++++++++|++.|+|
T Consensus 1 ~~dS~lv~Gvvl~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~n 80 (178)
T 1gml_A 1 MEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPD 80 (178)
T ss_dssp --CCSEEEEEEESCCCSSTTSCCEEESCCEEEESSCBSCC--------------CHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCcEEEEEEEEeccccCCCCCcccccceEEEEecccCCccccCccEEEECCHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 36899999999999875 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcc-eeEEEEEEEcCeEEEEEEecCC
Q 008377 292 VIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGY-VDSVSVEEIGGARVTIVRNEGG 370 (568)
Q Consensus 292 vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~-~~~v~~~~ig~~~~~~~~~~~~ 370 (568)
|||++++|+|.+++||+++||++++++++++|+|||++|||++++++++++++.+|+ |+.|++.++|+++|++|++|++
T Consensus 81 VVl~~k~I~d~a~~~l~k~gI~~vr~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~~v~~~~ig~~~~~~~~gc~~ 160 (178)
T 1gml_A 81 VVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKD 160 (178)
T ss_dssp EEEESSCBCHHHHHHHHHTTCEEECCCCHHHHHHHHHHHCCCEESCGGGCCGGGSBCCEEEEEEEEETTEEEEEEEEESS
T ss_pred EEEECCcccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCeEeCChhhCChhhhCCcccEEEEEEECCeEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999984
Q ss_pred CCceEEEEEcCCChh
Q 008377 371 GNSVSTVVLRGSTDS 385 (568)
Q Consensus 371 ~~~~~TIllrG~t~~ 385 (568)
++.|||+|||+++.
T Consensus 161 -~~~~TIllRG~~~~ 174 (178)
T 1gml_A 161 -PKACTILLRGASHH 174 (178)
T ss_dssp -TTSCEEEEEC----
T ss_pred -CCEEEEEEECCCcc
Confidence 89999999999975
No 28
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A
Probab=99.97 E-value=8e-32 Score=247.98 Aligned_cols=151 Identities=21% Similarity=0.408 Sum_probs=146.5
Q ss_pred EeeEEEeecCCC--CcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecC
Q 008377 220 VRGMVLKSDAVG--SIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEVIVSGA 297 (568)
Q Consensus 220 i~Givl~~~~~~--~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~vVl~~~ 297 (568)
++|++|++++.+ ||++++||||++++++|++++++.++++.++++++++++.+.|++++++++++|++.|+||||+++
T Consensus 1 i~Gvv~~k~~~~~~mpk~i~nakI~ll~~~Le~~k~e~~~~v~i~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nVVl~~k 80 (159)
T 1ass_A 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQK 80 (159)
T ss_dssp CCCEEESCCCSCTTSCSEEEEEEEEEESSCBSCCHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred CceEEEecccCCCCCCcCcCCccEEEEecCcCCcccccceeEEECCHHHHHHHHHHHHHHHHHHhhhhhhCCCeEEEECC
Confidence 479999999864 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCeecccCCCCCCCCCcceeEEEEEEEcCeEEEEEEecCC
Q 008377 298 AVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAVAMLKLCQPNPDDLGYVDSVSVEEIGGARVTIVRNEGG 370 (568)
Q Consensus 298 ~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ii~~~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~ 370 (568)
+|+|.+++||+++||++++++++++|+|||++|||++++++++++++.+|+|+.|++.++|+++|++|++|++
T Consensus 81 ~I~d~a~~~l~k~gI~~v~~v~~~dleria~atGa~iv~~~~~l~~~~LG~~~~v~e~~ig~~~~~~~~g~~~ 153 (159)
T 1ass_A 81 GIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMTFVMGCKN 153 (159)
T ss_dssp CBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCCBSSTTSCCTTSCEEEEEEEEEEETTEEEEEEESCC-
T ss_pred ccCHHHHHHHHHCCCEEEccCCHHHHHHHHHHhCCeeeCccccCCcccCccceEEEEEEECCeEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974
No 29
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis}
Probab=99.06 E-value=2.1e-09 Score=98.97 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=94.6
Q ss_pred eeEeeEEEeecCC---------CCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008377 218 TIVRGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAES 288 (568)
Q Consensus 218 ~li~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~ 288 (568)
++++||.|+++|. .|...++||+|++.+.. |++.+++.+ .++++.+.
T Consensus 3 evvEGmqfDrGYiSpyfvtd~~~m~~~le~p~ILitdkK-------------Is~i~~ilP-----------~LE~~~~~ 58 (194)
T 3m6c_A 3 EFTEGIGFDKGFLSAYFVTDFDNQQAVLEDALILLHQDK-------------ISSLPDLLP-----------LLEKVAGT 58 (194)
T ss_dssp CCCSSEEESCCBSCGGGCSBTTTTBEEEEEEEEEEBSSE-------------ECCHHHHHH-----------HHHHHHHH
T ss_pred EEEeeeEccCcccCceeeeccCCcEEEEecceEEEEcCc-------------cCCHHHHHH-----------HHHHHHHh
Confidence 5789999999872 35667889999999976 788999999 56788888
Q ss_pred CCcEEEecCCccHHHHHHH--Hh----CCeEEEEeCCh-----hHHHHHHHHhCCeecc-----cCCCCCCCCCcceeEE
Q 008377 289 GAEVIVSGAAVGEMALHFC--ER----YKLMVLKISSK-----FELRRFCRTTGAVAML-----KLCQPNPDDLGYVDSV 352 (568)
Q Consensus 289 ~v~vVl~~~~I~~~al~~l--~~----~~I~vv~~v~~-----~~Le~Ia~~tGa~ii~-----~~~~l~~~~lG~~~~v 352 (568)
+.+++|++.+|+..|+..| |+ .++++|+.+.. ..|++||.+||+++++ .+++.+.+++|+|++|
T Consensus 59 ~kpLlIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v 138 (194)
T 3m6c_A 59 GKPLLIVAEDVEGEALATLVVNAIRKTLKAVAVKGPYFGDRRKAFLEDLAVVTGGQVVNPDAGMVLREVGLEVLGSARRV 138 (194)
T ss_dssp TCCEEEEESEECHHHHHHHHHHHHHTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEE
T ss_pred CCCeEEEecccccchhhhhhhhhccceEEEEEEECCCCchhhhhhhHhHHHhcCCeEEeccCCcccccCCHHHCCCccEE
Confidence 9999999999999999755 33 57999999974 4599999999999997 4566778899999987
Q ss_pred EE
Q 008377 353 SV 354 (568)
Q Consensus 353 ~~ 354 (568)
.+
T Consensus 139 ~v 140 (194)
T 3m6c_A 139 VV 140 (194)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 30
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1
Probab=99.04 E-value=1.2e-09 Score=96.09 Aligned_cols=110 Identities=17% Similarity=0.237 Sum_probs=91.0
Q ss_pred eEEEeecC---------CCCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCcE
Q 008377 222 GMVLKSDA---------VGSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAEV 292 (568)
Q Consensus 222 Givl~~~~---------~~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~v 292 (568)
||.|+++| +.|...++||+|++.+.. |++.+++.+ +++++.+.+.++
T Consensus 1 GmqfDrGYlSpYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~llP-----------~LE~v~~~~~pL 56 (145)
T 1srv_A 1 GYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKK-------------VSNVRELLP-----------ILEQVAQTGKPL 56 (145)
T ss_dssp CEEESCCBSCGGGCSBTTTTBEEEEEEEEEEESSE-------------ECCHHHHHH-----------HHHHHHTTTCCE
T ss_pred CccccCCccCceeecCccccEEEeeccEEEEeccc-------------ccCHHHHHH-----------HHHHHHHHCCCE
Confidence 78888876 245667889999999976 789999999 577888999999
Q ss_pred EEecCCccHHHHHHH--Hh----CCeEEEEeCCh-----hHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEEE
Q 008377 293 IVSGAAVGEMALHFC--ER----YKLMVLKISSK-----FELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSVE 355 (568)
Q Consensus 293 Vl~~~~I~~~al~~l--~~----~~I~vv~~v~~-----~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~ 355 (568)
+|++++|+..|+..| |+ .++++|+.+.. ..|++||.+||+++++. +++.+.+++|+|++|.+.
T Consensus 57 lIIAedvegeaLatLvvNklrg~l~v~AVKAPgfGd~Rk~~L~DiAilTGg~visee~g~~Le~~~~~~LG~a~~v~vt 135 (145)
T 1srv_A 57 LIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRIT 135 (145)
T ss_dssp EEEESEECHHHHHHHHHHHHTTSCCEEEEECCSSHHHHHHHHHHHHHHHTCCEECTTTTCCGGGCCGGGCEEEEEEEEC
T ss_pred EEEecccchhhhhhhhhhhhcccceEEEEeCCCcchhhHHHHHHHHHHhCCEEEccccCCccccCCHhHCCccCEEEEc
Confidence 999999999999765 33 67899999963 45999999999999974 445667889999998553
No 31
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A
Probab=99.00 E-value=8.7e-09 Score=95.12 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=92.1
Q ss_pred eeEEEeecCC---------CCcccccCceEEEEeeccccccccccceEEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 008377 221 RGMVLKSDAV---------GSIKNMEKAKVAVFAGGVDTSATETKGTVLIHNAEQLENYAKTEEAKVEGLIKAVAESGAE 291 (568)
Q Consensus 221 ~Givl~~~~~---------~~~~~i~n~kIlll~~~Le~~~~~~~~~i~i~~~~~l~~~~~~E~~~l~~~v~~l~~~~v~ 291 (568)
+|+.|+++|. .|...++||+|++.+.. |++.+++.+ +++.+.+.+.+
T Consensus 13 ~~~qfDrGYiSPYfvtd~e~m~~~le~p~ILitdkK-------------Is~i~~ilP-----------~LE~v~~~~rp 68 (201)
T 3osx_A 13 EGMQFDRGYLSPYFINKPESGSVELENPYILLVDKK-------------ISNIRELLP-----------VLEGVAKASKP 68 (201)
T ss_dssp CCEEESCCBSCGGGCSBTTTTBEEEESCEEEEEEEE-------------ECCHHHHHH-----------HHHHHHTSSCC
T ss_pred cccEecCccCChheeecccCCEEEecCCeEEEEcCc-------------cCCHHHHHH-----------HHHHHHHhCCC
Confidence 6999998872 35667889999999987 788999999 57788899999
Q ss_pred EEEecCCccHHHHHHH--Hh----CCeEEEEeCCh-----hHHHHHHHHhCCeeccc-----CCCCCCCCCcceeEEEE
Q 008377 292 VIVSGAAVGEMALHFC--ER----YKLMVLKISSK-----FELRRFCRTTGAVAMLK-----LCQPNPDDLGYVDSVSV 354 (568)
Q Consensus 292 vVl~~~~I~~~al~~l--~~----~~I~vv~~v~~-----~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~ 354 (568)
++|++++|+..|+..| |+ .++++|+.+.. ..|++||.+||+++++. +++.+.+++|+|.+|.+
T Consensus 69 LlIIAEDvegEALatLvvNklrg~l~v~AVKAPgFGdrRk~~L~DIAilTGg~visee~g~~Le~~~~~~LG~a~~V~v 147 (201)
T 3osx_A 69 LVIIAEDVEGEALATLVVNNMRGIVKVASVKAPGFGDRRKAMLQDIATLTNGTVISEEIGLELEKATLEDLGQAKRVVI 147 (201)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHTSCCEEEEECSSCHHHHHHHHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEE
T ss_pred eEEEeccccchhhhHHHHhhccceEEEEEEeCCCCccchhhhhHhHHHHhCCEEEecccCCccccCCHhhCCCccEEEE
Confidence 9999999999999755 33 57999999974 45999999999999973 56677889999998743
No 32
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=62.61 E-value=20 Score=30.10 Aligned_cols=52 Identities=10% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+.|+++|+|. .|.+.+...|.+.||-++......--+.|.....+.
T Consensus 57 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 108 (124)
T 1eo1_A 57 TAQIIANNGVKAVIAS-SPGPNAFEVLNELGIKIYRATGTSVEENLKLFTEGN 108 (124)
T ss_dssp HHHHHHHTTCCEEEEC-CSSHHHHHHHHHHTCEEEECCSCCHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CcCHHHHHHHHHCCCEEEEcCCCCHHHHHHHHHhCC
Confidence 4456678899999998 599999999999999999975543334445444444
No 33
>1o13_A Probable NIFB protein; ribonuclease H-like motif fold, structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.83A {Thermotoga maritima} SCOP: c.55.5.1 PDB: 1t3v_A
Probab=61.67 E-value=16 Score=31.44 Aligned_cols=52 Identities=21% Similarity=0.194 Sum_probs=39.7
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+.++++||+. .|.+.+...|.++||-++......--+.|.....++
T Consensus 68 ~a~~L~~~gv~vVI~g-~IG~~a~~~L~~~GI~v~~~~~g~i~eal~~~~~G~ 119 (136)
T 1o13_A 68 VPNFVKEKGAELVIVR-GIGRRAIAAFEAMGVKVIKGASGTVEEVVNQYLSGQ 119 (136)
T ss_dssp HHHHHHHTTCSEEECS-CCCHHHHHHHHHTTCEEECSCCSBHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCEEEEC-CCCHHHHHHHHHCCCEEEecCCCCHHHHHHHHHhCC
Confidence 4566778899999997 689999999999999999876544344455545444
No 34
>2yx6_A Hypothetical protein PH0822; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=61.26 E-value=17 Score=30.36 Aligned_cols=52 Identities=13% Similarity=0.177 Sum_probs=39.5
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+.++++|++. .|.+.+...|.+.||-++......--+.|.....+.
T Consensus 55 ~~~~L~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~v~eal~~~~~g~ 106 (121)
T 2yx6_A 55 LPNFIKDHGAKIVLTY-GIGRRAIEYFNSLGISVVTGVYGRISDVIKAFIGGK 106 (121)
T ss_dssp HHHHHHHTTCCEEECS-BCCHHHHHHHHHTTCEEECSBCSBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHcCC
Confidence 5566778899999998 699999999999999999875543334445545444
No 35
>2wfb_A Putative uncharacterized protein ORP; mixed molybdenum-copper sulphide cluster, alpha and beta protein, biosynthetic protein; 2.00A {Desulfovibrio gigas}
Probab=57.29 E-value=19 Score=30.02 Aligned_cols=51 Identities=22% Similarity=0.173 Sum_probs=38.4
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCCh-hHHHHHHHHhCC
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSK-FELRRFCRTTGA 332 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~-~~Le~Ia~~tGa 332 (568)
..+.|.+.++++|+|. .|.+.+...|.+.||-++..... .--+.|.....+
T Consensus 59 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~g~~i~eal~~~~~g 110 (120)
T 2wfb_A 59 AAQVLAKSGAGVLLTG-YVGPKAFQALQAAGIKVGQDLEGLTVRQAVQRFLDG 110 (120)
T ss_dssp HHHHHHHHTEEEEECS-CCCHHHHHHHHHTTCEEECCCTTSBHHHHHHHHHTT
T ss_pred HHHHHHHCCCCEEEEC-CCCHhHHHHHHHCCCEEEEcCCCCcHHHHHHHHHcC
Confidence 4566677899999998 69999999999999999997654 333444444444
No 36
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=50.20 E-value=25 Score=28.98 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+.++++|++. .|.+.+...|.++||-++......--+.|.....++
T Consensus 54 ~~~~l~~~gv~~vi~~-~iG~~a~~~L~~~GI~v~~~~~~~i~eal~~~~~g~ 105 (116)
T 1rdu_A 54 VVQSLVSKGVEYLIAS-NVGRNAFETLKAAGVKVYRFEGGTVQEAIDAFSEGR 105 (116)
T ss_dssp HHHHHHTTTCCEEECS-SCCSSCHHHHHTTTCEEECCCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHHCCCEEEECCCCCHHHHHHHHHhCC
Confidence 3455678899999998 589999999999999999875544344455555444
No 37
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=48.14 E-value=27 Score=27.11 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=35.1
Q ss_pred HHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHH
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
.++.+.+-.+.+|+.+.+.++... .++.+++|.++...++.+|-+.+
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~v~sk~eLG~a~ 69 (82)
T 3v7e_A 19 TVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSMVESMKKLGKAC 69 (82)
T ss_dssp HHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHHHHH
T ss_pred HHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHh
Confidence 445566667899999999998755 35677999999988776665433
No 38
>2re2_A Uncharacterized protein TA1041; dinitrogenase iron-molybdenum cofactor, structural genomics, center for structural genomics; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728}
Probab=47.44 E-value=36 Score=29.13 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 281 LIKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
..+.|.+.++++|||. .|.+.+...|.+ ||-++......--+.+.....+.
T Consensus 71 ~~~~L~~~gv~~VI~g-~iG~~a~~~L~~-GI~v~~~~~~~veeal~~~~~G~ 121 (136)
T 2re2_A 71 MLKSALDHGANALVLS-EIGSPGFNFIKN-KMDVYIVPEMPVADALKLILEGK 121 (136)
T ss_dssp HHHHHHHTTCSEEEES-CCBHHHHHHHTT-TSEEEECCSCBHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEC-CCCHhHHHHHHC-CCEEEEcCCCCHHHHHHHHHhCC
Confidence 4566677899999997 689999999999 99999986533334444444443
No 39
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=40.57 E-value=58 Score=27.27 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=36.2
Q ss_pred HHHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHHH
Q 008377 280 GLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 280 ~~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~I 326 (568)
+.++.|.+-.+.+||.+.++++. +..+|.+++|.++...++.+|-+.
T Consensus 27 ~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a 78 (121)
T 2lbw_A 27 EVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLGAA 78 (121)
T ss_dssp HHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHHHH
T ss_pred HHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHHHH
Confidence 34566677789999999999984 235778899999888777776654
No 40
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=39.65 E-value=58 Score=27.58 Aligned_cols=48 Identities=6% Similarity=0.295 Sum_probs=35.2
Q ss_pred HHHHHHhcCCcEEEecCCccH-----HHHHHHHhCCeEEEEeCChhHHHHHHH
Q 008377 281 LIKAVAESGAEVIVSGAAVGE-----MALHFCERYKLMVLKISSKFELRRFCR 328 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~-----~al~~l~~~~I~vv~~v~~~~Le~Ia~ 328 (568)
.++.|.+-.+.+|+.+.+.+| .+..+|.+++|.++...+..+|-+.+-
T Consensus 32 v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG~a~G 84 (126)
T 2xzm_U 32 VLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLGEYLG 84 (126)
T ss_dssp HHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHHHHHT
T ss_pred HHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHHHC
Confidence 445566778999999999975 234678889999998776666655443
No 41
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=36.56 E-value=75 Score=25.55 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHHhCCe
Q 008377 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGAV 333 (568)
Q Consensus 280 ~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~tGa~ 333 (568)
+..+.|.+-.+.+||.+.+.++... +++..++|.++...++.+| ..++|-.
T Consensus 26 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~~~~s~~eL---G~A~Gk~ 80 (101)
T 3v7q_A 26 LVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYKKVESRAVL---GRSIGKE 80 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEEEESCHHHH---HHHTTSS
T ss_pred hhHHHHhcCceeEEEEeccccccchhhhcccccccCCCeeeechHHHH---HhhhCcc
Confidence 3455666778999999999998755 4567899999888766665 4455553
No 42
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=36.06 E-value=62 Score=26.02 Aligned_cols=50 Identities=20% Similarity=0.365 Sum_probs=36.6
Q ss_pred HHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 280 GLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 280 ~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
+..+.|.+-.+.+||.+.+.++... +++..++|.++...++.+|- .++|-
T Consensus 25 ~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~~~s~~eLG---~a~Gk 78 (101)
T 3on1_A 25 QVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKVVGNRQMLG---RAIGK 78 (101)
T ss_dssp HHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEEESCHHHHH---HHTTS
T ss_pred HHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHH---HHhCC
Confidence 3455666777999999999998655 45677899998877666654 44554
No 43
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=35.18 E-value=77 Score=25.40 Aligned_cols=48 Identities=6% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCChhHHHHHHHHhCC
Q 008377 283 KAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISSKFELRRFCRTTGA 332 (568)
Q Consensus 283 ~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~~~~Le~Ia~~tGa 332 (568)
+.|.+.++++|+|. +|.+.+...|.++ |-++......--+.|.....+
T Consensus 50 ~~l~~~gv~~vi~~-~iG~~a~~~L~~~-I~v~~~~~~~v~eal~~~~~g 97 (105)
T 2qtd_A 50 KSIVKENVNAIICK-NISEENYKKFSKK-IEIYHAEGDDVDKNISLFIEG 97 (105)
T ss_dssp HHHHHTCCSEEEES-CCCHHHHHHHHTT-CEEEECCSSCHHHHHHHHHTT
T ss_pred HHHHHCCCCEEEEC-CCCHHHHHHHHhc-cEEEECCCCCHHHHHHHHHcC
Confidence 45566899999996 6999999999999 999986554333444444444
No 44
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=32.00 E-value=51 Score=28.28 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++.++.|.+..+.+|+.+.++++. +..+|.+.||.++..-++.+|-+
T Consensus 38 ~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~ 89 (134)
T 2ale_A 38 NEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGR 89 (134)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHHH
T ss_pred hHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHHH
Confidence 445666667778999999999885 34677888998887766665543
No 45
>4a18_G RPL30; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_G 4a1b_G 4a1d_G 4adx_6
Probab=29.46 E-value=1.2e+02 Score=24.34 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEE-eCChhHHHHHHHHhCC
Q 008377 278 VEGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLK-ISSKFELRRFCRTTGA 332 (568)
Q Consensus 278 l~~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~-~v~~~~Le~Ia~~tGa 332 (568)
.++..+.|.+-.+.+||.+.+.++... .++..++|.++. ..+..+| ..++|-
T Consensus 27 ~~~v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL---G~a~Gk 83 (104)
T 4a18_G 27 YKSTIKAIRNGTAKLVFISNNCPTVRKSEIEYYASLAQISIHHFVGSNVEL---GTACGK 83 (104)
T ss_dssp HHHHHHHHHHTCCCEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH---HHHTTC
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEecCCHHHH---HHHhCC
Confidence 344566777778999999999998544 456678999996 6666665 445553
No 46
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=27.89 E-value=1.3e+02 Score=24.48 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEe-CChhHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKI-SSKFELRRF 326 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~-v~~~~Le~I 326 (568)
++..+.|.+-.+.+||.+.+.++... .++.+++|.++.. .++.+|-..
T Consensus 27 ~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG~a 79 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVYQHKITSLELGAV 79 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEEECCSCHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCHHHHHHH
Confidence 44556666777899999999987766 4567789998877 666665443
No 47
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=26.66 E-value=87 Score=26.09 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=34.5
Q ss_pred HHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHHHH
Q 008377 281 LIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 281 ~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
..+.|.+-.+.+|+.+.++++. ...+|.+++|.++...++.+|-..+
T Consensus 37 v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a~ 88 (120)
T 1xbi_A 37 VTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLGKAA 88 (120)
T ss_dssp HHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHHHHT
T ss_pred HHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHh
Confidence 4556666778999999999774 2357788899988887777665443
No 48
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=26.21 E-value=1.2e+02 Score=25.01 Aligned_cols=50 Identities=14% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEEe-CChhHHHHHH
Q 008377 278 VEGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLKI-SSKFELRRFC 327 (568)
Q Consensus 278 l~~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~~-v~~~~Le~Ia 327 (568)
.++.++.|.+-.+.+||.+.+.++... +++..++|.++.. -+..+|-..+
T Consensus 31 ~~~t~kai~~gkakLVilA~D~~~~~~~~i~~~c~~~~ipv~~~~~s~~eLG~A~ 85 (112)
T 3iz5_f 31 YKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTAC 85 (112)
T ss_dssp HHHHHHHHHTTCCSEEEECSCCCHHHHHHHHHHHHHTTCCEECCCCTTCTHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCcEEEeCCCHHHHHHHh
Confidence 344566777778999999999998644 4677899998887 6677765444
No 49
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=25.84 E-value=95 Score=30.23 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCC--------------------------hhHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS--------------------------KFELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~--------------------------~~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||.....++...+-|.+.||.++-... .+.++.++.++|-.
T Consensus 77 ~E~i~~l~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e 154 (326)
T 3psh_A 77 IESLLALKPDVVFVTNYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKK 154 (326)
T ss_dssp HHHHHHTCCSEEEEETTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEeCCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCH
Confidence 46778899999998766666777888888887765321 24678888888864
No 50
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=25.01 E-value=1.2e+02 Score=25.17 Aligned_cols=49 Identities=10% Similarity=0.142 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRFC 327 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~Ia 327 (568)
++..+.|.+-.+.+|+.+.+.++. ...+|.+++|.++...++.+|-..+
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG~a~ 88 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLGHAA 88 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHHHHT
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHHHHh
Confidence 445666667778999999999774 3357788999988887777665443
No 51
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=24.74 E-value=96 Score=26.45 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-H-H---HHHHhCCeEEEEeCChhHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-A-L---HFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-a-l---~~l~~~~I~vv~~v~~~~Le~I 326 (568)
++..+.|.+-.+.+||.+.+.++. . . .+|.+++|.++...++.+|-..
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG~a 99 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALGRA 99 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHHHH
Confidence 445566666778999999999886 3 2 4677899999888777665443
No 52
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=24.27 E-value=1.4e+02 Score=24.07 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCcEEEecCCccHHHH----HHHHhCCeEEEE-eCChhHHHHHHHHhCC
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEMAL----HFCERYKLMVLK-ISSKFELRRFCRTTGA 332 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~al----~~l~~~~I~vv~-~v~~~~Le~Ia~~tGa 332 (568)
++.++.|.+-.+.+||.+.+.++... +++..++|.++. ..+..+| ..++|-
T Consensus 28 ~~v~kai~~gkaklVilA~D~~~~~~~~i~~~c~~~~ip~~~~~~s~~eL---G~A~Gk 83 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANTPVLRKSELEYYAMLSKTKVYYFQGGNNEL---GTAVGK 83 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTSCHHHHHHHHHHHHHHTCEEEECSSCHHHH---HHHTTC
T ss_pred HHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCCHHHH---HHHhCC
Confidence 34566677778999999999998654 566778999995 5566665 555564
No 53
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=23.66 E-value=1.3e+02 Score=25.19 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRR 325 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~ 325 (568)
++..+.|.+-.+.+|+.+.++++. ...+|.+++|.++...++.+|-.
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG~ 85 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGE 85 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHHH
Confidence 445666667778999999999773 33577888998888777766644
No 54
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=22.47 E-value=1.4e+02 Score=27.62 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=37.3
Q ss_pred HHHHHhcCCcEEEecCC-ccHHHHHHHHhCCeEEEEeC----Ch----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAA-VGEMALHFCERYKLMVLKIS----SK----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~-I~~~al~~l~~~~I~vv~~v----~~----~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||.... .++...+.|.+.+|.++-.. +. +.++.++.++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (256)
T 2r7a_A 52 SEGILSLRPDSVITWQDAGPQIVLDQLRAQKVNVVTLPRVPATLEQMYANIRQLAKTLQVP 112 (256)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHccCCCEEEEcCCCCCHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHHhCCH
Confidence 46778899999998654 45677788899998655432 22 2478888888864
No 55
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=22.42 E-value=1.5e+02 Score=28.17 Aligned_cols=52 Identities=13% Similarity=0.150 Sum_probs=37.8
Q ss_pred HHHHHhcCCcEEEecCCc-cHHHHHHHHhCCeEEEEeC---C----hhHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAV-GEMALHFCERYKLMVLKIS---S----KFELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I-~~~al~~l~~~~I~vv~~v---~----~~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||..... ++...+.|.+.||.++-.. + .+.++.+++++|-.
T Consensus 52 ~E~i~~l~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (283)
T 2r79_A 52 AEGVLALRPDILIGTEEMGPPPVLKQLEGAGVRVETLSAKPDLEALESNLKKLGDWLGVP 111 (283)
T ss_dssp HHHHHTTCCSEEEECTTCCCHHHHHHHHHTTCCEEECCCCSSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhcCCCEEEEeCccCcHHHHHHHHHcCCcEEEecCCCCHHHHHHHHHHHHHHhCCH
Confidence 467789999999987653 5667788899987666432 2 24588888888864
No 56
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=21.52 E-value=1.4e+02 Score=24.90 Aligned_cols=48 Identities=25% Similarity=0.261 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcEEEecCCccHH-----HHHHHHhCCeEEEEeCChhHHHHH
Q 008377 279 EGLIKAVAESGAEVIVSGAAVGEM-----ALHFCERYKLMVLKISSKFELRRF 326 (568)
Q Consensus 279 ~~~v~~l~~~~v~vVl~~~~I~~~-----al~~l~~~~I~vv~~v~~~~Le~I 326 (568)
++..+.|.+-.+.+|+.+.+.++. ...++.+++|.++...++.+|-+.
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG~a 89 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALGRA 89 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 445566666778999999999764 235678899998887777766443
No 57
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=20.66 E-value=92 Score=29.08 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEE--EeCCh----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVL--KISSK----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv--~~v~~----~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||.....++.....|.+.+|.++ ..-+. +.++.++.++|-.
T Consensus 53 ~E~i~~l~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~i~~lg~~~g~~ 110 (260)
T 2q8p_A 53 VEAVKKLKPTHVLSVSTIKDEMQPFYKQLNMKGYFYDFDSLKGMQKSITQLGDQFNRK 110 (260)
T ss_dssp HHHHHHTCCSEEEEEGGGHHHHHHHHHHHTSCCEEECCSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCCCEEEecCccCHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHHhCCh
Confidence 3567888999999876666666777888776543 32222 4577888888764
No 58
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=20.44 E-value=1.2e+02 Score=29.99 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=32.5
Q ss_pred HHHHHhcCCcEEEecCCccHHHHHHHHhCCeEEEEeCC-----------hhHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVGEMALHFCERYKLMVLKISS-----------KFELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~~~al~~l~~~~I~vv~~v~-----------~~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||....-.+.+.+++.+.||.++---. .+.++.++.++|-.
T Consensus 89 ~E~Ilal~PDLIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e 151 (346)
T 2etv_A 89 LESLITLQPDVVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGRE 151 (346)
T ss_dssp HHHHHHHCCSEEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCCCCEEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCH
Confidence 35677788999998754344555677776665553210 23467777777753
No 59
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=20.20 E-value=1.9e+02 Score=26.79 Aligned_cols=52 Identities=4% Similarity=0.109 Sum_probs=38.4
Q ss_pred HHHHHhcCCcEEEecCCcc-HHHHHHHHhCCeEEEEeC---Ch----hHHHHHHHHhCCe
Q 008377 282 IKAVAESGAEVIVSGAAVG-EMALHFCERYKLMVLKIS---SK----FELRRFCRTTGAV 333 (568)
Q Consensus 282 v~~l~~~~v~vVl~~~~I~-~~al~~l~~~~I~vv~~v---~~----~~Le~Ia~~tGa~ 333 (568)
+|+|..++++|||...... +...+.|.+.||.++-.. +. +.++.++.++|-.
T Consensus 52 ~E~i~~l~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~~ 111 (255)
T 3md9_A 52 AEGILAMKPTMLLVSELAQPSLVLTQIASSGVNVVTVPGQTTPESVAMKINAVATALHQT 111 (255)
T ss_dssp HHHHHTTCCSEEEEETTCSCHHHHHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHccCCCEEEEcCCcCchhHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCCH
Confidence 4678899999999887654 456777889988776542 22 4578889999864
Done!