Your job contains 1 sequence.
>008379
MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC
MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA
HLVNQQVAHEIIALELLTILLENPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG
ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT
LDIFKPDPNFLDNEKRYEDMKKDLLGETSEDEEGSDAGSGDEDDSEEEEEEEDEEQMKIK
DETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLR
YYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVL
AYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTR
FAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQVSESEPDSEADNESESSDSSDSDTS
SSQSESEDSSSSDESNRDKRHSKRRRRH
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008379
(568 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025797 - symbol:AT1G80930 "AT1G80930" species... 2156 2.5e-223 1
UNIPROTKB|F1RYP5 - symbol:CWC22 "Uncharacterized protein"... 1473 6.0e-151 1
ZFIN|ZDB-GENE-060929-452 - symbol:cwc22 "CWC22 spliceosom... 1473 6.0e-151 1
UNIPROTKB|F1MWG3 - symbol:CWC22 "Uncharacterized protein"... 1472 7.6e-151 1
RGD|1565385 - symbol:Cwc22 "CWC22 spliceosome-associated ... 1468 2.0e-150 1
MGI|MGI:2136773 - symbol:Cwc22 "CWC22 spliceosome-associa... 1466 3.3e-150 1
UNIPROTKB|J9P9J1 - symbol:CWC22 "Uncharacterized protein"... 1465 4.2e-150 1
UNIPROTKB|B7WP74 - symbol:CWC22 "Pre-mRNA-splicing factor... 1464 5.4e-150 1
UNIPROTKB|Q9HCG8 - symbol:CWC22 "Pre-mRNA-splicing factor... 1464 5.4e-150 1
DICTYBASE|DDB_G0267796 - symbol:DDB_G0267796 "initiation ... 758 7.4e-150 2
UNIPROTKB|E2RIF6 - symbol:CWC22 "Uncharacterized protein"... 1461 1.1e-149 1
UNIPROTKB|B7WP27 - symbol:CWC22 "Pre-mRNA-splicing factor... 1457 3.0e-149 1
UNIPROTKB|Q5RA93 - symbol:CWC22 "Pre-mRNA-splicing factor... 1457 3.0e-149 1
UNIPROTKB|F1NI57 - symbol:CWC22 "Pre-mRNA-splicing factor... 1456 3.8e-149 1
ASPGD|ASPL0000053315 - symbol:AN0289 species:162425 "Emer... 1440 1.9e-147 1
UNIPROTKB|Q5ZKA3 - symbol:CWC22 "Pre-mRNA-splicing factor... 1437 3.9e-147 1
UNIPROTKB|Q52KN9 - symbol:cwc22 "Pre-mRNA-splicing factor... 1430 2.2e-146 1
FB|FBgn0086707 - symbol:ncm "nucampholin" species:7227 "D... 1400 3.3e-143 1
UNIPROTKB|E9PU74 - symbol:LOC500684 "Protein LOC500684" s... 764 1.8e-142 2
POMBASE|SPBC13E7.01 - symbol:cwf22 "splicing factor Cwf22... 1349 8.3e-138 1
WB|WBGene00002957 - symbol:let-858 species:6239 "Caenorha... 1252 1.6e-127 1
UNIPROTKB|Q17336 - symbol:let-858 "Pre-mRNA-splicing fact... 1252 1.6e-127 1
GENEDB_PFALCIPARUM|PFL1855w - symbol:PFL1855w "cell cycle... 584 9.3e-110 2
UNIPROTKB|Q8I540 - symbol:PFL1855w "Cell cycle control pr... 584 9.3e-110 2
RGD|1590641 - symbol:LOC680519 "similar to CG12750-PA" sp... 756 5.7e-75 1
CGD|CAL0000928 - symbol:orf19.1771 species:5476 "Candida ... 468 2.0e-69 2
SGD|S000003510 - symbol:CWC22 "Spliceosome-associated pro... 354 8.2e-49 2
TAIR|locus:504956291 - symbol:AT1G52325 "AT1G52325" speci... 250 8.2e-38 2
UNIPROTKB|F1LX25 - symbol:F1LX25 "Uncharacterized protein... 353 2.9e-32 1
UNIPROTKB|F1M323 - symbol:F1M323 "Uncharacterized protein... 333 3.8e-30 1
UNIPROTKB|E1B8C2 - symbol:LOC618228 "Uncharacterized prot... 212 1.5e-19 2
UNIPROTKB|F1P1C9 - symbol:NOM1 "Uncharacterized protein" ... 190 4.2e-19 2
MGI|MGI:1861749 - symbol:Nom1 "nucleolar protein with MIF... 214 1.3e-18 2
UNIPROTKB|Q5C9Z4 - symbol:NOM1 "Nucleolar MIF4G domain-co... 208 4.2e-17 2
ZFIN|ZDB-GENE-060503-321 - symbol:nom1 "nucleolar protein... 179 6.3e-17 2
TAIR|locus:2161548 - symbol:AT5G17930 species:3702 "Arabi... 194 7.4e-15 3
DICTYBASE|DDB_G0284539 - symbol:DDB_G0284539 "Nucleolar M... 177 8.3e-11 3
CGD|CAL0001070 - symbol:SGD1 species:5476 "Candida albica... 125 1.2e-09 3
POMBASE|SPAC24C9.11 - symbol:SPAC24C9.11 "ribosome small ... 123 8.7e-09 2
ASPGD|ASPL0000072929 - symbol:AN4581 species:162425 "Emer... 130 1.8e-06 2
FB|FBgn0035336 - symbol:CG9004 species:7227 "Drosophila m... 133 9.1e-06 3
UNIPROTKB|G4N7G4 - symbol:MGG_13527 "Uncharacterized prot... 137 1.2e-05 3
WB|WBGene00013129 - symbol:Y52B11A.10 species:6239 "Caeno... 135 2.0e-05 1
>TAIR|locus:2025797 [details] [associations]
symbol:AT1G80930 "AT1G80930" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006412 "translation" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:CP002684
GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 EMBL:AC011713
HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 EMBL:AY139757 EMBL:BT004547
IPI:IPI00532679 PIR:C96842 RefSeq:NP_178208.1 UniGene:At.43915
ProteinModelPortal:Q9SAG7 STRING:Q9SAG7 PRIDE:Q9SAG7
EnsemblPlants:AT1G80930.1 GeneID:844433 KEGG:ath:AT1G80930
TAIR:At1g80930 InParanoid:Q9SAG7 OMA:DGHENGS PhylomeDB:Q9SAG7
ProtClustDB:CLSN2682123 Genevestigator:Q9SAG7 Uniprot:Q9SAG7
Length = 900
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 423/517 (81%), Positives = 452/517 (87%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
MMK+VEDKSS EYQRLTWDALRKSINGLVNKVNA+NIKNIIPELFAENLIRGRGLFCRSC
Sbjct: 342 MMKEVEDKSSVEYQRLTWDALRKSINGLVNKVNASNIKNIIPELFAENLIRGRGLFCRSC 401
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
MKSQMASPGFTDVFAALVAV+N KF V ELLLKR+VLQLKRAYKRNDKPQLLAAVKFIA
Sbjct: 402 MKSQMASPGFTDVFAALVAVINAKFPEVAELLLKRVVLQLKRAYKRNDKPQLLAAVKFIA 461
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HLVNQQVA +PTDDSVEVAVGFV ECG++LQD+SP+GL+GIFERFRG
Sbjct: 462 HLVNQQVAEEIIALELVTILLGDPTDDSVEVAVGFVTECGAMLQDVSPRGLNGIFERFRG 521
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHEGEIDKRVQ+LIE LFA RKAKFQG+PAVRPELDLV E++ +H++SL EIDPE
Sbjct: 522 ILHEGEIDKRVQYLIESLFATRKAKFQGHPAVRPELDLV--EEKYSHDLSLDHEIDPETA 579
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-QMKI 299
LDIFKPDP+F++NEK+YE +KK+LL QM+I
Sbjct: 580 LDIFKPDPDFVENEKKYEALKKELLGDEESEDEDGSDASSEDNDEEEDESDEEDEEQMRI 639
Query: 300 KDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL 359
+DETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL
Sbjct: 640 RDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL 699
Query: 360 RYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHV 419
RYYGLLGQRFCMINK+HQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGT ALPWHV
Sbjct: 700 RYYGLLGQRFCMINKIHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTDALPWHV 759
Query: 420 LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNT 479
LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERL DPTMQ+S ESIFP+DNPKNT
Sbjct: 760 LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLQDPTMQESLESIFPKDNPKNT 819
Query: 480 RFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
RFAINFFTSIGLGGITENLREYLKNMP LIMQ+QKQV
Sbjct: 820 RFAINFFTSIGLGGITENLREYLKNMPSLIMQRQKQV 856
>UNIPROTKB|F1RYP5 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:CU855527
Ensembl:ENSSSCT00000017430 Uniprot:F1RYP5
Length = 904
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 280/520 (53%), Positives = 371/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 141 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIVRGRGLLSRSV 200
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDKP L A KF+A
Sbjct: 201 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKPLCLTASKFVA 260
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 261 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 320
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 321 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 380
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 381 LNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEEEEGEEDEEGQK 440
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 441 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 500
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 501 TYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 560
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 561 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 620
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 621 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 660
>ZFIN|ZDB-GENE-060929-452 [details] [associations]
symbol:cwc22 "CWC22 spliceosome-associated protein
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-060929-452 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 EMBL:BC124357 IPI:IPI00491845
RefSeq:NP_001071037.1 UniGene:Dr.74197 ProteinModelPortal:Q08C72
GeneID:566033 KEGG:dre:566033 InParanoid:Q08C72 NextBio:20887991
ArrayExpress:Q08C72 Uniprot:Q08C72
Length = 985
Score = 1473 (523.6 bits), Expect = 6.0e-151, P = 6.0e-151
Identities = 278/520 (53%), Positives = 371/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + DKSS EYQR++W+AL+KSINGL+NKVN +NI NII EL EN++RGRGL RS
Sbjct: 236 MQAQITDKSSLEYQRMSWEALKKSINGLINKVNVSNIANIIQELLQENIVRGRGLLARSI 295
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V++A+VA++N+KF +GEL+LKR++L ++ Y+RNDK Q L A KF+
Sbjct: 296 LQAQAASPIFTHVYSAVVAIINSKFPQIGELILKRLILNFRKGYRRNDKQQCLTASKFVG 355
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+ F+KECG L ++SP+G++ IFER R
Sbjct: 356 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAISFLKECGLKLTEVSPRGINAIFERLRN 415
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FAIRK F+ +P + LDLV+ EDQ TH + L+DE + E
Sbjct: 416 ILHESEIDKRVQYMIEVMFAIRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNTEDI 475
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKIK 300
L++FK DPNFL+NE++Y+ +K+++L + + K
Sbjct: 476 LNVFKLDPNFLENEEKYKTIKREILDEGSSDSGDDAGGSGDDEDDDEEDEEAAAGEEQEK 535
Query: 301 ----DETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
D+TE NLV RRTIYL I SS+DFEE HKL+K+ Q ELC M+L+CC+Q+R
Sbjct: 536 VTIFDQTEVNLVAFRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMILDCCAQQR 595
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFC++ K + E+FE F +QY IHRLETNKLRNVA+ FAHLL T ++P
Sbjct: 596 TYEKFFGLLAGRFCLLKKEYMESFEAIFQEQYETIHRLETNKLRNVARIFAHLLYTDSVP 655
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL +R++E+ TTSSSRIF+KILFQEL ++G+ LNERL D T+Q FE +FPRDNP
Sbjct: 656 WSVLECVRMSEDTTTSSSRIFVKILFQELCAYMGLPKLNERLKDTTLQPFFEGLFPRDNP 715
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++IM Q ++V
Sbjct: 716 RNTRFAINFFTSIGLGGLTDELREHLKNAPKMIMTQNQEV 755
>UNIPROTKB|F1MWG3 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 GO:GO:0071013 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:DAAA02004113
IPI:IPI00708801 Ensembl:ENSBTAT00000028962 Uniprot:F1MWG3
Length = 899
Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
Identities = 280/520 (53%), Positives = 370/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 140 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIVRGRGLLSRSV 199
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDKP L A KF+A
Sbjct: 200 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKPLCLTASKFVA 259
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 260 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 319
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 320 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 379
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y +KK++L +
Sbjct: 380 LNVFKMDPNFMENEEKYRAIKKEILDEGDSDSNTDQDAGSSEEEEEEEEEEGEEDEEGQK 439
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 440 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 499
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 500 TYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 559
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 560 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 619
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 620 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 659
>RGD|1565385 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1565385
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 IPI:IPI00382207
Ensembl:ENSRNOT00000037684 UCSC:RGD:1565385 ArrayExpress:F1LY38
Uniprot:F1LY38
Length = 905
Score = 1468 (521.8 bits), Expect = 2.0e-150, P = 2.0e-150
Identities = 278/517 (53%), Positives = 369/517 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 143 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSV 202
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 203 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 262
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 263 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 322
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 323 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 382
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXQ 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 383 LNVFKMDPNFMENEEKYKVIKKEILDEGDSDSNTDQEAGSSPSRHSENSPFSRASSSGQK 442
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 443 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQR 502
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 503 TYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 562
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 563 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 622
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQ 513
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+
Sbjct: 623 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQK 659
>MGI|MGI:2136773 [details] [associations]
symbol:Cwc22 "CWC22 spliceosome-associated protein homolog
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 MGI:MGI:2136773
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 OrthoDB:EOG4JM7P4 ChiTaRS:CWC22 EMBL:AK045589
EMBL:AK132001 EMBL:AK077961 EMBL:AK149528 EMBL:BC003993
IPI:IPI00756701 IPI:IPI00757147 RefSeq:NP_085037.2
RefSeq:NP_766255.1 UniGene:Mm.288151 ProteinModelPortal:Q8C5N3
PhosphoSite:Q8C5N3 PaxDb:Q8C5N3 PRIDE:Q8C5N3
Ensembl:ENSMUST00000065889 Ensembl:ENSMUST00000111818
Ensembl:ENSMUST00000111821 GeneID:80744 KEGG:mmu:80744
InParanoid:Q8C5N3 OMA:VENEERY NextBio:350099 Bgee:Q8C5N3
CleanEx:MM_BC003993 Genevestigator:Q8C5N3 Uniprot:Q8C5N3
Length = 908
Score = 1466 (521.1 bits), Expect = 3.3e-150, P = 3.3e-150
Identities = 279/520 (53%), Positives = 370/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DKSS YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 140 MQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSV 199
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 200 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 259
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 260 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 319
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 320 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 379
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 380 LNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEDEEEEGEDEEGGQ 439
Query: 297 -MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE 355
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+
Sbjct: 440 KVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQ 499
Query: 356 RTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHAL 415
RTY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +L
Sbjct: 500 RTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSL 559
Query: 416 PWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDN 475
PW VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDN
Sbjct: 560 PWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDN 619
Query: 476 PKNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQ 515
P+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ +
Sbjct: 620 PRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPE 659
>UNIPROTKB|J9P9J1 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 CTD:57703
EMBL:AAEX03017820 EMBL:AAEX03017821 RefSeq:XP_545549.2
Ensembl:ENSCAFT00000049152 GeneID:488427 KEGG:cfa:488427
Uniprot:J9P9J1
Length = 908
Score = 1465 (520.8 bits), Expect = 4.2e-150, P = 4.2e-150
Identities = 279/520 (53%), Positives = 370/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 142 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIVRGRGLLSRSV 201
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 202 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 261
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 262 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 321
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 322 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 381
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 382 LNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEDEEGEEDEEGQK 441
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 442 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 501
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 502 TYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 561
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 562 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 621
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 622 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661
>UNIPROTKB|B7WP74 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
HOGENOM:HOG000212368 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322
ChiTaRS:CWC22 IPI:IPI00917297 ProteinModelPortal:B7WP74
STRING:B7WP74 Ensembl:ENST00000404136 ArrayExpress:B7WP74
Bgee:B7WP74 Uniprot:B7WP74
Length = 745
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 279/520 (53%), Positives = 370/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 142 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSV 201
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 202 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 261
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 262 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 321
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 322 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDV 381
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 382 LNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQK 441
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 442 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 501
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 502 TYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 561
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 562 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 621
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 622 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661
>UNIPROTKB|Q9HCG8 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IC] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0048024 Gene3D:1.25.40.180 eggNOG:NOG293831
KO:K13100 OMA:SENFRRK InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 CTD:57703 OrthoDB:EOG4JM7P4 EMBL:AB046824
EMBL:AK025635 EMBL:AK026978 EMBL:AC068194 EMBL:AC096587
EMBL:BC016651 EMBL:BC031216 EMBL:BC053573 EMBL:BC057826
EMBL:BC093952 EMBL:BC093954 IPI:IPI00177381 RefSeq:NP_065994.1
UniGene:Hs.311363 ProteinModelPortal:Q9HCG8 IntAct:Q9HCG8
STRING:Q9HCG8 PhosphoSite:Q9HCG8 DMDM:296439380 PaxDb:Q9HCG8
PRIDE:Q9HCG8 Ensembl:ENST00000410053 GeneID:57703 KEGG:hsa:57703
UCSC:uc002unp.2 GeneCards:GC02M180809 H-InvDB:HIX0022794
HGNC:HGNC:29322 HPA:HPA036748 neXtProt:NX_Q9HCG8
PharmGKB:PA164718415 InParanoid:Q9HCG8 ChiTaRS:CWC22
GenomeRNAi:57703 NextBio:64575 ArrayExpress:Q9HCG8 Bgee:Q9HCG8
Genevestigator:Q9HCG8 Uniprot:Q9HCG8
Length = 908
Score = 1464 (520.4 bits), Expect = 5.4e-150, P = 5.4e-150
Identities = 279/520 (53%), Positives = 370/520 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 142 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSV 201
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 202 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 261
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 262 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 321
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 322 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDV 381
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 382 LNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQK 441
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 442 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 501
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 502 TYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 561
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 562 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 621
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 622 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661
>DICTYBASE|DDB_G0267796 [details] [associations]
symbol:DDB_G0267796 "initiation factor eIF-4 gamma,
MA3 domain-containing protein" species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
dictyBase:DDB_G0267796 SUPFAM:SSF48371 GO:GO:0003677
EMBL:AAFI02000003 GO:GO:0005681 GO:GO:0003743 GO:GO:0000398
Gene3D:1.25.40.180 eggNOG:NOG293831 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 OMA:VENEERY
RefSeq:XP_647313.1 ProteinModelPortal:Q55G70 STRING:Q55G70
EnsemblProtists:DDB0233565 GeneID:8616124 KEGG:ddi:DDB_G0267796
InParanoid:Q55G70 Uniprot:Q55G70
Length = 925
Score = 758 (271.9 bits), Expect = 7.4e-150, Sum P(2) = 7.4e-150
Identities = 136/218 (62%), Positives = 182/218 (83%)
Query: 299 IKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTY 358
I+D+T+TNL+NLR+TIYL IMSS DFEE HKLLK+K++ G E E+C ML++CCSQERTY
Sbjct: 660 IEDKTDTNLINLRKTIYLAIMSSKDFEECAHKLLKLKIQ-GHEDEICNMLIQCCSQERTY 718
Query: 359 LRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWH 418
L +YG L QRFCMINK++++ F++CF +QY++IHRLETN+ RN+AK +AHL T ALPW
Sbjct: 719 LPFYGNLSQRFCMINKIYRDLFDRCFAEQYAVIHRLETNRFRNIAKMYAHLFFTDALPWT 778
Query: 419 VLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKN 478
L Y+ + E +T S+SRIFIKILFQE++E LGI+ LNERL DP++Q+SF IFP+DN KN
Sbjct: 779 TLQYVHINENETNSASRIFIKILFQEMAEFLGIQKLNERLQDPSLQESFTGIFPKDNQKN 838
Query: 479 TRFAINFFTSIGLGGITENLREYLKNMPRL-IMQQQKQ 515
TR+AINFFTSI LG +T +LRE+LKN P++ +++++KQ
Sbjct: 839 TRYAINFFTSISLGALTHDLREFLKNAPKVSVIEKKKQ 876
Score = 726 (260.6 bits), Expect = 7.4e-150, Sum P(2) = 7.4e-150
Identities = 137/266 (51%), Positives = 192/266 (72%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M K ++DKSS EYQR+ WDALRKSINGL+NKV+ +N+KNI ELF EN+IRGRGL C+S
Sbjct: 341 MQKQIQDKSSPEYQRMEWDALRKSINGLINKVSYSNVKNIAVELFGENIIRGRGLLCQSI 400
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
M +Q S FT+V+ AL+A++NTK +GELLLKR++ Q K++++RNDKP +A+ +F+A
Sbjct: 401 MVAQQVSLPFTNVYGALIAIINTKIPDIGELLLKRLIDQFKKSFRRNDKPICIASTRFVA 460
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HLVNQQV+ PTDDSVEVAV F ECG LQ+LS + + IF RF+
Sbjct: 461 HLVNQQVSGILVPLEILTLLLDKPTDDSVEVAVNFFLECGQTLQELSSQTFNSIFARFKA 520
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHE-ISLQDEIDPEI 239
ILHEGEI+KR Q+ IE LF + F +PA+ P +D+V+IEDQ+TH+ +S+++ + E
Sbjct: 521 ILHEGEIEKRTQYQIEELFKQVRLNFPQHPALIPSMDVVEIEDQITHDTLSIEENYNTET 580
Query: 240 TLDIFKPDPNFLDNEKRYEDMKKDLL 265
L+ FK D FL+N+++Y+ +K+ +L
Sbjct: 581 FLNFFKVDDKFLENQEQYKQVKRSIL 606
>UNIPROTKB|E2RIF6 [details] [associations]
symbol:CWC22 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
GeneTree:ENSGT00650000093379 OMA:SENFRRK InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AAEX03017820
EMBL:AAEX03017821 Ensembl:ENSCAFT00000022474 Uniprot:E2RIF6
Length = 914
Score = 1461 (519.4 bits), Expect = 1.1e-149, P = 1.1e-149
Identities = 279/522 (53%), Positives = 370/522 (70%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 141 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQELLQENIVRGRGLLSRSV 200
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 201 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 260
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 261 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 320
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 321 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 380
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 381 LNVFKMDPNFMENEEKYKAIKKEILDEGDSDSNTDQDAGSSEEEEEEEDEEGEEDEEGKR 440
Query: 297 --MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQ 354
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q
Sbjct: 441 QKVTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQ 500
Query: 355 ERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHA 414
+RTY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +
Sbjct: 501 QRTYEKFFGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDS 560
Query: 415 LPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRD 474
LPW VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRD
Sbjct: 561 LPWSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRD 620
Query: 475 NPKNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
NP+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 621 NPRNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 662
>UNIPROTKB|B7WP27 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 Gene3D:1.25.40.180 HOGENOM:HOG000212368
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AC068194 EMBL:AC096587 HGNC:HGNC:29322 ChiTaRS:CWC22
IPI:IPI00917297 ProteinModelPortal:B7WP27 STRING:B7WP27
Ensembl:ENST00000295749 HOVERGEN:HBG054017 ArrayExpress:B7WP27
Bgee:B7WP27 Uniprot:B7WP27
Length = 908
Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
Identities = 278/520 (53%), Positives = 369/520 (70%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++R RGL RS
Sbjct: 142 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRDRGLLSRSV 201
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 202 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 261
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 262 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 321
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 322 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDV 381
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 382 LNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQK 441
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 442 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 501
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 502 TYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 561
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 562 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 621
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 622 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661
>UNIPROTKB|Q5RA93 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9601 "Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
CTD:57703 EMBL:CR859125 RefSeq:NP_001125780.1 UniGene:Pab.19070
ProteinModelPortal:Q5RA93 GeneID:100172707 KEGG:pon:100172707
InParanoid:Q5RA93 Uniprot:Q5RA93
Length = 908
Score = 1457 (517.9 bits), Expect = 3.0e-149, P = 3.0e-149
Identities = 278/520 (53%), Positives = 369/520 (70%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN +NI II EL EN++RGRGL RS
Sbjct: 142 MQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQELLQENIVRGRGLLSRSV 201
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L A KF+A
Sbjct: 202 LQAQSASPIFTHVYAALVAIINSKFPQIGELILKRLILNFRKGYRRNDKQLCLTASKFVA 261
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IF R R
Sbjct: 262 HLINQNVAHEVLCLEMLTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFGRLRN 321
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 322 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDV 381
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ---- 296
L++FK DPNF++NE++Y+ +KK++L +
Sbjct: 382 LNVFKMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQK 441
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+ I D+TE NLV+ RRTIYL I SS+DFEE HKLLK++ Q ELC M+L+CC+Q+R
Sbjct: 442 VTIHDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQR 501
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 502 TYEKFFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLP 561
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL I+L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q FE + PRDNP
Sbjct: 562 WSVLECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNP 621
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
+NTRFAINFFTSIGLGG+T+ LRE+LKN P++I+ Q+ V
Sbjct: 622 RNTRFAINFFTSIGLGGLTDELREHLKNTPKVIVAQKPDV 661
>UNIPROTKB|F1NI57 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
GO:GO:0071013 Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00584173 EMBL:AADN02019987 Ensembl:ENSGALT00000014643
OMA:DESNGRD Uniprot:F1NI57
Length = 854
Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
Identities = 278/517 (53%), Positives = 371/517 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGLVNKVN +NI+NII EL EN++RGRGL RS
Sbjct: 76 MQEQITDKNSLAYQRMSWEALKKSINGLVNKVNVSNIENIIYELLQENIVRGRGLLSRSI 135
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L + KF+A
Sbjct: 136 LQAQGASPIFTHVYAALVAIINSKFPNIGELILKRLILNFRKGYRRNDKQLCLTSSKFVA 195
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDS+EVA+GF+KE G L ++SP+G++ IF+R R
Sbjct: 196 HLMNQNVAHEVLCLEMLTLLLERPTDDSIEVAIGFLKESGLKLTEVSPRGINAIFDRLRH 255
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE +ID RVQ++IE +FA+RK F+ +P + LDLV+ EDQ TH + L+DE +PE
Sbjct: 256 ILHESKIDMRVQYMIEVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDV 315
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-MKI 299
L++FK DPNF++NE++Y+ +KK++L Q + +
Sbjct: 316 LNVFKMDPNFMENEEKYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTV 375
Query: 300 KDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL 359
D+TE NLV+ RRTIYL I SS+DFEE HKLLK+ Q ELC M+L+CC+Q+RTY
Sbjct: 376 HDKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMDFPESQTKELCNMILDCCAQQRTYE 435
Query: 360 RYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHV 419
+++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T ++PW V
Sbjct: 436 KFFGLLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSIPWSV 495
Query: 420 LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNT 479
L I L+EE TTSSSRIF+KI FQELSE++G+ LN RL D T+Q FE + PRDNP+NT
Sbjct: 496 LECIILSEETTTSSSRIFVKIFFQELSEYMGLPNLNARLKDITLQPFFEGLLPRDNPRNT 555
Query: 480 RFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
RFAINFFTSIGLGG+T+ LRE+LKN P++IM Q++ V
Sbjct: 556 RFAINFFTSIGLGGLTDELREHLKNAPKMIMTQKQDV 592
>ASPGD|ASPL0000053315 [details] [associations]
symbol:AN0289 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0005737 SUPFAM:SSF48371
GO:GO:0008380 EMBL:BN001308 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 EMBL:AACD01000005
eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_657893.1
STRING:Q5BGP1 GeneID:2876063 KEGG:ani:AN0289.2 OrthoDB:EOG4KPXKV
Uniprot:Q5BGP1
Length = 868
Score = 1440 (512.0 bits), Expect = 1.9e-147, P = 1.9e-147
Identities = 276/508 (54%), Positives = 364/508 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
+ + DK+S EYQR+ W+AL+KSINGL+NKVN +NIK I+PELF ENL+RGRGLFCRS
Sbjct: 124 LQAQITDKTSKEYQRMAWEALKKSINGLINKVNVSNIKYIVPELFGENLVRGRGLFCRSI 183
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
MK+Q AS FT ++AA+ A+VNTK VGELLL R+++Q ++A+KRNDK +++ FIA
Sbjct: 184 MKAQAASLPFTPIYAAMAAIVNTKLPQVGELLLSRLIIQFRKAFKRNDKAVCISSTTFIA 243
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLS-PKGLHGIFERFR 179
HL NQQV H PTDDSVE+AVG +E G L+++S P L +F++FR
Sbjct: 244 HLCNQQVVHEMLAAQILLLLLHKPTDDSVEIAVGLTREVGQHLEEMSGPIAL-AVFDQFR 302
Query: 180 GILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEI 239
ILHE +IDKRVQ++IE LF +RK +++ PA++ ELDLV+ EDQ+TH I L DEI+ +
Sbjct: 303 NILHEADIDKRVQYMIEVLFQVRKDRYKDNPAIKEELDLVEEEDQITHRIGLDDEIETQD 362
Query: 240 TLDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKI 299
L+IFK DP + ++E+ Y+ +K ++L QM I
Sbjct: 363 GLNIFKYDPQWEEHEEAYKKLKAEILGEGSDDEDESGEDDESSDEESEEER-----QMDI 417
Query: 300 KDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL 359
KD++ T+LVNLRRTIYLTIMSS+DFEE HKL+KI L G E EL M++ECCSQERTY
Sbjct: 418 KDQSNTDLVNLRRTIYLTIMSSIDFEECCHKLMKISLPAGLEPELPSMIIECCSQERTYS 477
Query: 360 RYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHV 419
++YGL+G+RF IN++ + FE F + Y IHR ETN+LRN+A+FF H+L T AL WHV
Sbjct: 478 KFYGLIGERFAKINRLWSDLFENAFAKYYDTIHRYETNRLRNIARFFGHMLSTDALGWHV 537
Query: 420 LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNT 479
L+ I L EE+TTSSSRIFIKILFQ+L+EHLG+ L ER+TD ++ SFE +FP DNP+NT
Sbjct: 538 LSVIHLNEEETTSSSRIFIKILFQDLAEHLGLPKLRERMTDELLRPSFEGLFPTDNPRNT 597
Query: 480 RFAINFFTSIGLGGITENLREYLKNMPR 507
RF+IN+FTSIG G +TE LRE+LKNMP+
Sbjct: 598 RFSINYFTSIGFGVLTEELREFLKNMPK 625
>UNIPROTKB|Q5ZKA3 [details] [associations]
symbol:CWC22 "Pre-mRNA-splicing factor CWC22 homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 eggNOG:NOG293831 HOGENOM:HOG000212368 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
EMBL:AJ720181 IPI:IPI00584173 RefSeq:NP_001026421.1
UniGene:Gga.22423 ProteinModelPortal:Q5ZKA3 STRING:Q5ZKA3
GeneID:424123 KEGG:gga:424123 CTD:57703 InParanoid:Q5ZKA3
OrthoDB:EOG4JM7P4 NextBio:20826498 Uniprot:Q5ZKA3
Length = 926
Score = 1437 (510.9 bits), Expect = 3.9e-147, P = 3.9e-147
Identities = 276/517 (53%), Positives = 368/517 (71%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGLVNKVN +NI+NII EL EN++RGRGL RS
Sbjct: 148 MQEQITDKNSLAYQRMSWEALKKSINGLVNKVNVSNIENIIHELLQENIVRGRGLLSRSI 207
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALVA++N+KF +GEL+LKR++L ++ Y+RNDK L + KF+A
Sbjct: 208 LQAQGASPIFTHVYAALVAIINSKFPNIGELILKRLILNFRKGYRRNDKQLCLTSSKFVA 267
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDS+EVA+GF+KE G L ++SP+G++ IF+R R
Sbjct: 268 HLMNQNVAHEVLCLEMLTLLLERPTDDSIEVAIGFLKESGLKLTEVSPRGINAIFDRLRH 327
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE +ID RVQ++IE +FA+RK F+ +P + LDLV+ EDQ TH + L+DE +PE
Sbjct: 328 ILHESKIDMRVQYMIEVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDV 387
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQ-MKI 299
L++FK DPNF++NE++Y+ +KK++L Q + +
Sbjct: 388 LNVFKMDPNFMENEEKYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTV 447
Query: 300 KDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYL 359
D+TE NLV TIYL I SS+DFEE HKLLK+ Q ELC M+L+CC+Q+RTY
Sbjct: 448 HDKTEINLVPSVGTIYLAIQSSLDFEECAHKLLKMDFPESQTKELCNMILDCCAQQRTYE 507
Query: 360 RYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHV 419
+++GLL RFCM+ K + E+FE F +QY IHRLETNKLRNVAK FAHLL T ++PW V
Sbjct: 508 KFFGLLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSIPWSV 567
Query: 420 LAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNT 479
L I L+EE TTSSSRIF+KI FQELSE++G+ LN RL D T+Q FE + PRDNP+NT
Sbjct: 568 LECIILSEETTTSSSRIFVKIFFQELSEYMGLPNLNARLKDITLQPFFEGLLPRDNPRNT 627
Query: 480 RFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
RFAINFFTSIGLGG+T+ LRE+LKN P++IM Q++ V
Sbjct: 628 RFAINFFTSIGLGGLTDELREHLKNAPKMIMTQKQDV 664
>UNIPROTKB|Q52KN9 [details] [associations]
symbol:cwc22 "Pre-mRNA-splicing factor CWC22 homolog"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 CTD:57703 EMBL:BC094259
RefSeq:NP_001089418.1 UniGene:Xl.41789 ProteinModelPortal:Q52KN9
GeneID:734468 KEGG:xla:734468 Xenbase:XB-GENE-1010542
Uniprot:Q52KN9
Length = 803
Score = 1430 (508.4 bits), Expect = 2.2e-146, P = 2.2e-146
Identities = 274/520 (52%), Positives = 364/520 (70%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DKSS YQR++W+AL+KSINGLVNKVN +NI NII EL EN++RGRGL RS
Sbjct: 189 MQEQITDKSSMAYQRMSWEALKKSINGLVNKVNVSNIGNIIQELLQENIVRGRGLLARSV 248
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALV+++N+KF +GEL+LKR++L ++ Y+RNDK L + KF+A
Sbjct: 249 LQAQSASPIFTHVYAALVSIINSKFPHIGELILKRLILNFRKGYRRNDKQLCLTSSKFVA 308
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH P DDSVEVA+GF+KE G L ++P+G++ IFER R
Sbjct: 309 HLINQNVAHEVLALEMLTLLLERPNDDSVEVAIGFLKESGLKLTQVTPRGINAIFERLRN 368
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ EDQ TH + L+D+ + E
Sbjct: 369 ILHESEIDKRVQYMIEVMFAVRKDGFKDHPVIPEGLDLVEEEDQFTHMLPLEDDYNQEDV 428
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXQ 296
L++FK DP+FL+NE++Y+ +KK++L +
Sbjct: 429 LNVFKMDPDFLENEEKYKAIKKEILDEGDSDSEGDANEGSEDESEEEEEDGQEAGTEGEK 488
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
M I D+TE NLV RRTIYL I SS+DFEE HKL+K+ Q ELC M+L+CC+Q+R
Sbjct: 489 MTIHDKTEVNLVAFRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMILDCCAQQR 548
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
TY +++GLL RFC++ K + E FE F +Q+ IHRLETNKLRNVAK FAHLL T +LP
Sbjct: 549 TYEKFFGLLAGRFCLLKKEYLEAFENIFKEQFETIHRLETNKLRNVAKMFAHLLYTDSLP 608
Query: 417 WHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNP 476
W VL + L+EE TTSSSRIF+KI FQEL E++G+ LN RL D T+Q F+ + P DNP
Sbjct: 609 WSVLECMNLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDVTLQPFFQGLLPMDNP 668
Query: 477 KNTRFAINFFTSIGLGGITENLREYLKNMPRLIMQQQKQV 516
KNTRFAINFFTSIGLGG+T+ LRE+LKN P++IM Q++ V
Sbjct: 669 KNTRFAINFFTSIGLGGLTDELREHLKNAPKMIMTQKQNV 708
>FB|FBgn0086707 [details] [associations]
symbol:ncm "nucampholin" species:7227 "Drosophila
melanogaster" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0006911 "phagocytosis, engulfment" evidence=IMP]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0006911 SUPFAM:SSF48371
EMBL:AE014134 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
GeneTree:ENSGT00650000093379 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:AY061596
EMBL:AY089504 EMBL:BT100034 EMBL:BT031132 RefSeq:NP_609877.2
UniGene:Dm.11546 ProteinModelPortal:Q9VJ87 MINT:MINT-1003368
STRING:Q9VJ87 PaxDb:Q9VJ87 EnsemblMetazoa:FBtr0081088 GeneID:35099
KEGG:dme:Dmel_CG12750 CTD:35099 FlyBase:FBgn0086707
InParanoid:Q9VJ87 OMA:ETEDILN OrthoDB:EOG48GTJG PhylomeDB:Q9VJ87
GenomeRNAi:35099 NextBio:791857 Bgee:Q9VJ87 Uniprot:Q9VJ87
Length = 1330
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 267/512 (52%), Positives = 362/512 (70%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + DKSSA YQR+ W+AL+KSI+G +NKVN TNI I EL EN++RGRGL RS
Sbjct: 399 MQSQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNIAIITRELLRENIVRGRGLLSRSI 458
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT V+AALV+++N+KF +GELLLKR+V+Q +RA++RNDK ++A +FI
Sbjct: 459 IQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLVIQFRRAFRRNDKMVCMSATRFIG 518
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HLVNQ+VAH PTDDSVEVA+ F+KECG L ++S KG+ IFE R
Sbjct: 519 HLVNQRVAHEILALEILTLLVETPTDDSVEVAIAFLKECGMKLTEVSSKGIGAIFEMLRN 578
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHEG++DKRVQ++IE LF IRK F+ + AV PEL+LV+ +DQ TH + L + + E
Sbjct: 579 ILHEGKLDKRVQYMIEVLFQIRKDGFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDI 638
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMK-- 298
L++FK D N+ +NE +Y+ + +++L + +
Sbjct: 639 LNVFKFDDNYAENEDKYKGLSREILGSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAG 698
Query: 299 -IKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT 357
I D TETNL+ LRRTIYLTI SS+D+EE HKL+K++L+PGQE+ELC M L+CC+++RT
Sbjct: 699 DIIDSTETNLIALRRTIYLTINSSLDYEECAHKLMKMQLKPGQEIELCHMFLDCCAEQRT 758
Query: 358 YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPW 417
Y ++YGLL QRFC INK++ FE+ F Y HRL+TN+LRNV+KFFAHLL T A+ W
Sbjct: 759 YEKFYGLLAQRFCNINKIYIPPFEEIFKDTYQTTHRLDTNRLRNVSKFFAHLLFTDAISW 818
Query: 418 HVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPK 477
VL I+L E+DTTSSSRIFIKILFQEL+E++G+ LN +L D + +S +FP+DNP+
Sbjct: 819 DVLECIQLNEDDTTSSSRIFIKILFQELAEYMGLGKLNAKLKDDVLVESIAGLFPKDNPR 878
Query: 478 NTRFAINFFTSIGLGGITENLREYLKNMPRLI 509
NTRF+INFFTSIGLGG+T++LR +LKN P+ +
Sbjct: 879 NTRFSINFFTSIGLGGLTDDLRRFLKNAPKSV 910
>UNIPROTKB|E9PU74 [details] [associations]
symbol:LOC500684 "Protein LOC500684" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
IPI:IPI00765240 Ensembl:ENSRNOT00000036640 RGD:1562981 OMA:SHENSYS
Uniprot:E9PU74
Length = 879
Score = 764 (274.0 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 139/265 (52%), Positives = 197/265 (74%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK+S YQR++W+AL+KSINGL+NKVN NI II EL EN++RGRGL RS
Sbjct: 139 MQEQIMDKNSLAYQRMSWEALKKSINGLINKVNICNISIIIQELLQENIVRGRGLLSRSV 198
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT ++AALVA++N+KF +GEL+LKR+++ ++ Y+RNDK L A KF+A
Sbjct: 199 LQAQSASPIFTHLYAALVAIINSKFPQIGELILKRLIINFRKGYRRNDKQLCLTASKFVA 258
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 259 HLINQNVAHEVLCLEILTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 318
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
I+HE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 319 IVHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 378
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLL 265
L++FK DPNF++NE++Y+ +KK++L
Sbjct: 379 LNVFKMDPNFMENEEKYKVIKKEIL 403
Score = 650 (233.9 bits), Expect = 1.8e-142, Sum P(2) = 1.8e-142
Identities = 121/194 (62%), Positives = 154/194 (79%)
Query: 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQEN 379
SS+DFEE HKLLK++ Q ELC M+L+CC+Q+RTY +++GLL RFCM+ K + E+
Sbjct: 440 SSLDFEECVHKLLKMEFAESQTKELCNMILDCCAQQRTYEKFFGLLAGRFCMLKKEYMES 499
Query: 380 FEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIK 439
FE F +QY+ IHRLETNKLRNVAK FAHLL T +LPW VL I+L+EE TTSSSRIF+K
Sbjct: 500 FESIFKEQYNTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEETTTSSSRIFVK 559
Query: 440 ILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFTSIGLGGITENLR 499
I FQEL E++G+ LN RL D T+Q FE + PR+NP+NTRFAINFFTSIGLGG+T+ LR
Sbjct: 560 IFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRNNPRNTRFAINFFTSIGLGGLTDELR 619
Query: 500 EYLKNMPRLIMQQQ 513
E+LKN P++I+ Q+
Sbjct: 620 EHLKNTPKVIVAQK 633
>POMBASE|SPBC13E7.01 [details] [associations]
symbol:cwf22 "splicing factor Cwf22" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 PomBase:SPBC13E7.01 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
Gene3D:1.25.40.180 GO:GO:0045292 eggNOG:NOG293831 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
OrthoDB:EOG4KPXKV EMBL:D89100 PIR:T39492 IntAct:Q9P6R9
STRING:Q9P6R9 KEGG:spo:SPBC13E7.01 NextBio:20801084 Uniprot:Q9P6R9
Length = 887
Score = 1349 (479.9 bits), Expect = 8.3e-138, P = 8.3e-138
Identities = 252/513 (49%), Positives = 359/513 (69%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
+ + D ++ EYQR+ W+AL+KSINGL+NKVN +NI++IIPELF EN+IRGR L+CRS
Sbjct: 103 LQAQLTDVNTPEYQRMQWEALKKSINGLINKVNKSNIRDIIPELFQENIIRGRALYCRSI 162
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
MK+Q AS FT ++AA+ AV+NTKF +GELLL R+++Q +++++RNDK +++ FIA
Sbjct: 163 MKAQAASLPFTPIYAAMTAVINTKFPQIGELLLTRLIVQFRKSFQRNDKSMCISSSSFIA 222
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQ++AH PT+DS+E+AV ++E G+ L ++S + +G+FERFR
Sbjct: 223 HLINQKIAHEIVGLQILAVLLERPTNDSIEIAVMLLREIGAYLAEVSTRAYNGVFERFRT 282
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
ILHEG++++R QF+IE LF RK KF+ P + ELDLV+ EDQ+TH ISL D +D + +
Sbjct: 283 ILHEGQLERRTQFIIEVLFQTRKDKFKNNPTIPQELDLVEEEDQITHYISLDDNLDVQES 342
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKIK 300
L IF DP++ +NEK+Y+ +K ++L + ++
Sbjct: 343 LGIFHYDPDYEENEKKYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEKPQVI 402
Query: 301 DETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLR 360
D+T +LVNLR++IYLTIMSSVDFEE HKLLKI L GQE+ELC M++EC SQERTY +
Sbjct: 403 DQTNASLVNLRKSIYLTIMSSVDFEECCHKLLKIDLPEGQEIELCNMVIECNSQERTYAK 462
Query: 361 YYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVL 420
+YGL+G+RFC +++ + +E+CF Y IHR ETN+LRN+A FFA+LL T ++ W V
Sbjct: 463 FYGLIGERFCKLSRTWRSTYEQCFKNYYETIHRYETNRLRNIALFFANLLSTDSIGWEVY 522
Query: 421 AYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTR 480
+RLTE+DTT+SSRIF+KI+FQE+ E LG++ L ERL DP + +FP D +N R
Sbjct: 523 DCVRLTEDDTTASSRIFLKIMFQEIVEALGLKSLVERLHDPNLVPYLHGLFPVDEARNVR 582
Query: 481 FAINFFTSIGLGGITENLREYLKNMPRLIMQQQ 513
F+IN+FTSIGLG +TE +REYL MP+ ++Q
Sbjct: 583 FSINYFTSIGLGALTEEMREYLLTMPKSEPKEQ 615
>WB|WBGene00002957 [details] [associations]
symbol:let-858 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0018996 "molting cycle, collagen
and cuticulin-based cuticle" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0007281
"germ cell development" evidence=IMP] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043073 "germ cell nucleus"
evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
GO:GO:0009792 GO:GO:0040007 GO:GO:0005654 SUPFAM:SSF48371
GO:GO:0002119 GO:GO:0008380 GO:GO:0003677 GO:GO:0018996
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 GO:GO:0000790
GO:GO:0007369 Gene3D:1.25.40.180 GO:GO:0042078 EMBL:U19615
EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1 UniGene:Cel.5489
ProteinModelPortal:Q17336 DIP:DIP-26173N IntAct:Q17336
MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 236/507 (46%), Positives = 341/507 (67%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK S +YQR+ W+ ++K I+GLVN+VNA N+ I+ EL EN+IR +GL CR
Sbjct: 173 MQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNLVQIVRELLQENVIRSKGLLCRDI 232
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q SPGF++V+AAL AV+N+KF VGELLL+R+++Q KR+++RND+ + +KFIA
Sbjct: 233 IQAQAFSPGFSNVYAALAAVINSKFPHVGELLLRRLIVQFKRSFRRNDRGVTVNVIKFIA 292
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQQVAH PTDDSVEVA+ F+KECG+ L +++P L+ +++R R
Sbjct: 293 HLINQQVAHEVLALEIMILMLEEPTDDSVEVAIAFLKECGAKLLEIAPAALNSVYDRLRA 352
Query: 181 ILHEGE-----IDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEI 235
IL E E +D+R+Q++IE IRK KF YPAV +LDL++ EDQ+ H ++L+D +
Sbjct: 353 ILMETERSENALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHTLNLEDAV 412
Query: 236 DPEITLDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 295
DPE L++FK DP F NE+ YE+++K+++
Sbjct: 413 DPENGLNVFKLDPEFEKNEEVYEEIRKEIIGNADISDEDGGDELDDEEEGSDVEEAPKKT 472
Query: 296 QMKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE 355
+I D T+ NL RR +YLT+ SS+D++EA HKLLK+K+ + ELC ML++CC+Q+
Sbjct: 473 T-EIIDNTDQNLTAFRREVYLTMQSSLDYQEAAHKLLKMKIPDSMQNELCAMLVDCCAQQ 531
Query: 356 RTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHAL 415
RTY R+YG+L +RFC + +Q+ FEK YS IHR++ KLRN+A+ AHLL T A+
Sbjct: 532 RTYERFYGMLIERFCRLRLEYQQYFEKLCQDTYSTIHRIDITKLRNLARLIAHLLSTDAI 591
Query: 416 PWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDN 475
W +LA +++TEEDTTSS RI+IK +F EL E +G+ L+ R+TDPT+ F +FPR N
Sbjct: 592 DWKILADMKMTEEDTTSSGRIYIKYIFNELVEAMGMVKLHSRVTDPTLAHCFVGLFPRTN 651
Query: 476 PKNTRFAINFFTSIGLGGITENLREYL 502
P + RF+INFFT IGLGG+T LRE+L
Sbjct: 652 PNSARFSINFFTMIGLGGLTLELREWL 678
>UNIPROTKB|Q17336 [details] [associations]
symbol:let-858 "Pre-mRNA-splicing factor CWC22 homolog"
species:6239 "Caenorhabditis elegans" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 GO:GO:0009792 GO:GO:0040007
GO:GO:0005654 SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0008380
GO:GO:0003677 GO:GO:0018996 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0000790 GO:GO:0007369 Gene3D:1.25.40.180
GO:GO:0042078 EMBL:U19615 EMBL:Z81525 PIR:T21688 RefSeq:NP_496363.1
UniGene:Cel.5489 ProteinModelPortal:Q17336 DIP:DIP-26173N
IntAct:Q17336 MINT:MINT-1105983 STRING:Q17336 PaxDb:Q17336
EnsemblMetazoa:F33A8.1.1 EnsemblMetazoa:F33A8.1.2 GeneID:174689
KEGG:cel:CELE_F33A8.1 UCSC:F33A8.1.1 CTD:174689 WormBase:F33A8.1
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 HOGENOM:HOG000212368
InParanoid:Q17336 KO:K13100 OMA:SENFRRK NextBio:885078
GO:GO:0043073 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 Uniprot:Q17336
Length = 897
Score = 1252 (445.8 bits), Expect = 1.6e-127, P = 1.6e-127
Identities = 236/507 (46%), Positives = 341/507 (67%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + DK S +YQR+ W+ ++K I+GLVN+VNA N+ I+ EL EN+IR +GL CR
Sbjct: 173 MQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNLVQIVRELLQENVIRSKGLLCRDI 232
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q SPGF++V+AAL AV+N+KF VGELLL+R+++Q KR+++RND+ + +KFIA
Sbjct: 233 IQAQAFSPGFSNVYAALAAVINSKFPHVGELLLRRLIVQFKRSFRRNDRGVTVNVIKFIA 292
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL+NQQVAH PTDDSVEVA+ F+KECG+ L +++P L+ +++R R
Sbjct: 293 HLINQQVAHEVLALEIMILMLEEPTDDSVEVAIAFLKECGAKLLEIAPAALNSVYDRLRA 352
Query: 181 ILHEGE-----IDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEI 235
IL E E +D+R+Q++IE IRK KF YPAV +LDL++ EDQ+ H ++L+D +
Sbjct: 353 ILMETERSENALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHTLNLEDAV 412
Query: 236 DPEITLDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 295
DPE L++FK DP F NE+ YE+++K+++
Sbjct: 413 DPENGLNVFKLDPEFEKNEEVYEEIRKEIIGNADISDEDGGDELDDEEEGSDVEEAPKKT 472
Query: 296 QMKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE 355
+I D T+ NL RR +YLT+ SS+D++EA HKLLK+K+ + ELC ML++CC+Q+
Sbjct: 473 T-EIIDNTDQNLTAFRREVYLTMQSSLDYQEAAHKLLKMKIPDSMQNELCAMLVDCCAQQ 531
Query: 356 RTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHAL 415
RTY R+YG+L +RFC + +Q+ FEK YS IHR++ KLRN+A+ AHLL T A+
Sbjct: 532 RTYERFYGMLIERFCRLRLEYQQYFEKLCQDTYSTIHRIDITKLRNLARLIAHLLSTDAI 591
Query: 416 PWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDN 475
W +LA +++TEEDTTSS RI+IK +F EL E +G+ L+ R+TDPT+ F +FPR N
Sbjct: 592 DWKILADMKMTEEDTTSSGRIYIKYIFNELVEAMGMVKLHSRVTDPTLAHCFVGLFPRTN 651
Query: 476 PKNTRFAINFFTSIGLGGITENLREYL 502
P + RF+INFFT IGLGG+T LRE+L
Sbjct: 652 PNSARFSINFFTMIGLGGLTLELREWL 678
>GENEDB_PFALCIPARUM|PFL1855w [details] [associations]
symbol:PFL1855w "cell cycle control protein,
putative" species:5833 "Plasmodium falciparum" [GO:0051726
"regulation of cell cycle" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0003677 GO:GO:0003723 GO:GO:0051726 EMBL:AE014188
GO:GO:0016070 Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 584 (210.6 bits), Expect = 9.3e-110, Sum P(2) = 9.3e-110
Identities = 105/205 (51%), Positives = 148/205 (72%)
Query: 298 KIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT 357
+I D TE L+NLR+ +YL+IMSS+ +EE HKLLK+ ++ G E+E+C ML++CC E+T
Sbjct: 761 EIHDMTEQYLINLRKNVYLSIMSSLSYEECVHKLLKLNIKKGYEIEICNMLIDCCCMEKT 820
Query: 358 YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPW 417
+ ++Y L +R C + K++QENFEKCF ++ HRLET KLRN +KFFAHLL T A+ W
Sbjct: 821 FQKFYALQAERLCKLKKIYQENFEKCFDNSFNTAHRLETAKLRNCSKFFAHLLYTDAISW 880
Query: 418 HVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPK 477
+ I+LTEEDTTSS+RIFIKIL QEL+ +LG++ ++ P + +FP +N +
Sbjct: 881 SIFKIIKLTEEDTTSSTRIFIKILLQELTNNLGLQAFYHKINHPAISPFLIGLFPTNNAQ 940
Query: 478 NTRFAINFFTSIGLGGITENLREYL 502
N RF INFFT+IGLG +T +LR+ L
Sbjct: 941 NIRFCINFFTAIGLGALTSSLRKLL 965
Score = 534 (193.0 bits), Expect = 9.3e-110, Sum P(2) = 9.3e-110
Identities = 108/265 (40%), Positives = 167/265 (63%)
Query: 4 DVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKS 63
+V +K S YQ+ W L+K IN +VNKVN NI + ELF NLIRG+GLF R+ + +
Sbjct: 419 EVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFECNLIRGKGLFSRALIHA 478
Query: 64 QMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIAHLV 123
Q++SP FT+VF L+ +VN+KF +G L ++RI+L +RAYKRNDK VKFIAH++
Sbjct: 479 QLSSPAFTNVFTCLLCIVNSKFPNIGLLTIQRIILHFRRAYKRNDKILCFNTVKFIAHMI 538
Query: 124 NQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILH 183
NQ++ H N T+DSV+V F+ E G + ++ KGL IF+R + I+
Sbjct: 539 NQRIVHEIVGLQLCSLLLQNITNDSVQVCTYFLAEVGELYTNICRKGLDIIFDRLKDIIQ 598
Query: 184 EGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDE-IDPEITLD 242
EG+I+ + Q+ IE L+ RK F+ +P+V +L+L+D ED++ HEI + DE + + L+
Sbjct: 599 EGQINIKTQYDIEKLWNYRKNNFKDFPSVHDDLNLIDEEDKIVHEIDILDESFNSQEELN 658
Query: 243 IFKPDP--NFLDNEKRYEDMKKDLL 265
IF+ P + + E ++ + ++LL
Sbjct: 659 IFREVPYEQYEEEENEWKHISEELL 683
>UNIPROTKB|Q8I540 [details] [associations]
symbol:PFL1855w "Cell cycle control protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0051726 "regulation of cell
cycle" evidence=ISS] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0051726 EMBL:AE014188 GO:GO:0016070
Gene3D:1.25.40.180 KO:K13100 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 RefSeq:XP_001350777.1
ProteinModelPortal:Q8I540 IntAct:Q8I540 MINT:MINT-1580329
EnsemblProtists:PFL1855w:mRNA GeneID:811423 KEGG:pfa:PFL1855w
EuPathDB:PlasmoDB:PF3D7_1238300 HOGENOM:HOG000283489
ProtClustDB:CLSZ2848125 Uniprot:Q8I540
Length = 967
Score = 584 (210.6 bits), Expect = 9.3e-110, Sum P(2) = 9.3e-110
Identities = 105/205 (51%), Positives = 148/205 (72%)
Query: 298 KIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT 357
+I D TE L+NLR+ +YL+IMSS+ +EE HKLLK+ ++ G E+E+C ML++CC E+T
Sbjct: 761 EIHDMTEQYLINLRKNVYLSIMSSLSYEECVHKLLKLNIKKGYEIEICNMLIDCCCMEKT 820
Query: 358 YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPW 417
+ ++Y L +R C + K++QENFEKCF ++ HRLET KLRN +KFFAHLL T A+ W
Sbjct: 821 FQKFYALQAERLCKLKKIYQENFEKCFDNSFNTAHRLETAKLRNCSKFFAHLLYTDAISW 880
Query: 418 HVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPK 477
+ I+LTEEDTTSS+RIFIKIL QEL+ +LG++ ++ P + +FP +N +
Sbjct: 881 SIFKIIKLTEEDTTSSTRIFIKILLQELTNNLGLQAFYHKINHPAISPFLIGLFPTNNAQ 940
Query: 478 NTRFAINFFTSIGLGGITENLREYL 502
N RF INFFT+IGLG +T +LR+ L
Sbjct: 941 NIRFCINFFTAIGLGALTSSLRKLL 965
Score = 534 (193.0 bits), Expect = 9.3e-110, Sum P(2) = 9.3e-110
Identities = 108/265 (40%), Positives = 167/265 (63%)
Query: 4 DVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKS 63
+V +K S YQ+ W L+K IN +VNKVN NI + ELF NLIRG+GLF R+ + +
Sbjct: 419 EVTNKKSVLYQKQEWMKLKKKINNIVNKVNIDNISEVCYELFECNLIRGKGLFSRALIHA 478
Query: 64 QMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIAHLV 123
Q++SP FT+VF L+ +VN+KF +G L ++RI+L +RAYKRNDK VKFIAH++
Sbjct: 479 QLSSPAFTNVFTCLLCIVNSKFPNIGLLTIQRIILHFRRAYKRNDKILCFNTVKFIAHMI 538
Query: 124 NQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILH 183
NQ++ H N T+DSV+V F+ E G + ++ KGL IF+R + I+
Sbjct: 539 NQRIVHEIVGLQLCSLLLQNITNDSVQVCTYFLAEVGELYTNICRKGLDIIFDRLKDIIQ 598
Query: 184 EGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDE-IDPEITLD 242
EG+I+ + Q+ IE L+ RK F+ +P+V +L+L+D ED++ HEI + DE + + L+
Sbjct: 599 EGQINIKTQYDIEKLWNYRKNNFKDFPSVHDDLNLIDEEDKIVHEIDILDESFNSQEELN 658
Query: 243 IFKPDP--NFLDNEKRYEDMKKDLL 265
IF+ P + + E ++ + ++LL
Sbjct: 659 IFREVPYEQYEEEENEWKHISEELL 683
>RGD|1590641 [details] [associations]
symbol:LOC680519 "similar to CG12750-PA" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 RGD:1590641
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 GeneTree:ENSGT00650000093379 OrthoDB:EOG4JM7P4
IPI:IPI00766583 Ensembl:ENSRNOT00000058354 UCSC:RGD:1590641
Uniprot:D3ZEL0
Length = 453
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 137/265 (51%), Positives = 196/265 (73%)
Query: 1 MMKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSC 60
M + + +K+S YQR++W+A++KSINGL+NKVN NI II EL EN++RGRGL RS
Sbjct: 143 MQEQITEKTSLAYQRMSWEAMKKSINGLINKVNICNISIIIQELLQENIVRGRGLLSRSV 202
Query: 61 MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIA 120
+++Q ASP FT ++AALVA++N+KF +GEL+LKR+++ ++ Y+RNDK L A KF+A
Sbjct: 203 LQAQSASPIFTHLYAALVAIINSKFPQIGELILKRLIINFRKGYRRNDKQLCLTASKFVA 262
Query: 121 HLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG 180
HL NQ VAH PTDDSVEVA+GF+KECG L +SP+G++ IFER R
Sbjct: 263 HLTNQNVAHEVLCLEILTLLLERPTDDSVEVAIGFLKECGLKLTQVSPRGINAIFERLRN 322
Query: 181 ILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEIT 240
I+HE EIDKRVQ++IE +FA+RK F+ +P + LDLV+ +DQ TH + L+D+ +PE
Sbjct: 323 IVHESEIDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDV 382
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLL 265
L++FK DPNF++NE++Y+ +KK++L
Sbjct: 383 LNVFKMDPNFMENEEKYKVIKKEIL 407
>CGD|CAL0000928 [details] [associations]
symbol:orf19.1771 species:5476 "Candida albicans" [GO:0005684
"U2-type spliceosomal complex" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 CGD:CAL0000928 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.180 eggNOG:NOG293831
KO:K13100 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 EMBL:AACQ01000104 EMBL:AACQ01000105
RefSeq:XP_714376.1 RefSeq:XP_714416.1 ProteinModelPortal:Q59XY0
STRING:Q59XY0 GeneID:3643938 GeneID:3643966 KEGG:cal:CaO19.1771
KEGG:cal:CaO19.9340 Uniprot:Q59XY0
Length = 648
Score = 468 (169.8 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 118/335 (35%), Positives = 180/335 (53%)
Query: 195 IEGLFAIRKAKFQGYPAVRPELDLVDIEDQLTHEISLQDEIDPEITLDIFKPDPNFLDNE 254
IE + + + F+ ++ LDLV+ ED+ TH I+L+D++ L++F D +LD+E
Sbjct: 222 IEYILKLARNDFKNISIIKNGLDLVETEDKETHVITLEDKLYSRDHLNVFSVDEEYLDHE 281
Query: 255 KRYEDMKKDLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQMKIKDETETNLVNLRRTI 314
Y ++KK++L + KI D +++ L+ ++T+
Sbjct: 282 NEYIELKKEILGETDHEDENENEIQVIETTKNY--------EEKITDMSQSELLQYQKTV 333
Query: 315 YLTIMSSVDFEEAGHKLLKIKLEP---------------GQEME-LCIMLLECCSQERTY 358
YLTIMSS+ +EA HKLLK+ + + E L M+++CCSQE+TY
Sbjct: 334 YLTIMSSMSSDEAVHKLLKLNFKSKIKNKIKNKTKTKTNSNDNEILADMVIKCCSQEKTY 393
Query: 359 LRYYGLLGQRFCMINKVHQEN-FEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPW 417
+YYG++G++ N H N F K F Y +I ETN LRN+ KFF HL + L
Sbjct: 394 SKYYGIIGEKLISRND-HWHNLFIKLFKYYYDIIENFETNSLRNLGKFFGHLFASDKLAL 452
Query: 418 -HVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERL-TDPTMQDSFESIFPRDN 475
+ I+LTE+DT + RI +K +FQE+ E LGI + ERL D ++ + IFP N
Sbjct: 453 DQAWSNIKLTEQDTNPAKRILLKFIFQEMIEELGINEVKERLINDDYLKPYIKGIFPVIN 512
Query: 476 P--KNT---RFAINFFTSIGLGGITENLREYLKNM 505
K+ RF+INFFT+IGLG +TE +R L N+
Sbjct: 513 VDGKDADAIRFSINFFTAIGLGVLTEEMRYVLDNL 547
Score = 254 (94.5 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 58/181 (32%), Positives = 100/181 (55%)
Query: 13 YQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQMASPGFTD 72
YQR W +K+I L+ ++ +NIK + +LF NL+R +GLF R MK Q+ +
Sbjct: 20 YQRTKWIETKKNIKQLLQQLTPSNIKQTVLQLFQINLLRYQGLFIREIMKQQIRITTNAE 79
Query: 73 VFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHXXX 132
++ +L++++N+K +GELL+ R+VLQ K+ Y +N+K + +++ FI L+NQQV +
Sbjct: 80 LYGSLISIINSKIPEIGELLINRLVLQFKKNYLQNNKNLINSSIIFICQLINQQVLNEIL 139
Query: 133 XXXXXXXXXX--------NPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILHE 184
N ++++E+A+ +K+ GS L S L I R + IL +
Sbjct: 140 ILQILQMLLESNVPNNNNNNNNNNIELAIMVLKQTGSYLFKHSNTALIMILNRLKDILQD 199
Query: 185 G 185
G
Sbjct: 200 G 200
>SGD|S000003510 [details] [associations]
symbol:CWC22 "Spliceosome-associated protein that is required
for pre-mRNA splicing" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005684 "U2-type spliceosomal complex" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SGD:S000003510
GO:GO:0005737 SUPFAM:SSF48371 EMBL:BK006941 GO:GO:0003677
GO:GO:0003723 GO:GO:0000398 Gene3D:1.25.40.180 GO:GO:0005684
eggNOG:NOG293831 GeneTree:ENSGT00650000093379 KO:K13100
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
OrthoDB:EOG4KPXKV EMBL:Z73063 PIR:S64613 RefSeq:NP_011794.3
RefSeq:NP_011800.3 ProteinModelPortal:P53333 DIP:DIP-1869N
IntAct:P53333 MINT:MINT-408252 STRING:P53333 PaxDb:P53333
PeptideAtlas:P53333 EnsemblFungi:YGR278W GeneID:853195
GeneID:853201 KEGG:sce:YGR278W KEGG:sce:YGR284C CYGD:YGR278w
HOGENOM:HOG000112091 OMA:QITHRIG NextBio:973356
Genevestigator:P53333 GermOnline:YGR278W Uniprot:P53333
Length = 577
Score = 354 (129.7 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 78/209 (37%), Positives = 125/209 (59%)
Query: 296 QMKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE 355
Q++I D T TN V ++ IYL + SS+ +EA HKLLK+K+ + + ++++ QE
Sbjct: 277 QLQIYDMTSTNDVEFKKKIYLVLKSSLSGDEAAHKLLKLKIANNLKKSVVDIIIKSSLQE 336
Query: 356 RTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSM-IHRLETNKLRNVAKFFAHLLGTHA 414
T+ ++Y +L +R ++ Q + + F Q Y+ I ET++LR + KF+ HL+
Sbjct: 337 STFSKFYSILSERMITFHRSWQTAYNETFEQNYTQDIEDYETDQLRILGKFWGHLISYEF 396
Query: 415 LPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRD 474
LP L I+LTEE++ RIFIK LFQEL LG+ L RL + + +FP +
Sbjct: 397 LPMDCLKIIKLTEEESCPQGRIFIKFLFQELVNELGLDELQLRLNSSKL----DGMFPLE 452
Query: 475 -NPKNTRFAINFFTSIGLGGITENLREYL 502
+ ++ R++INFFT+IGLG +TE++R L
Sbjct: 453 GDAEHIRYSINFFTAIGLGLLTEDMRSRL 481
Score = 181 (68.8 bits), Expect = 8.2e-49, Sum P(2) = 8.2e-49
Identities = 57/265 (21%), Positives = 120/265 (45%)
Query: 5 VEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLFCRSCMKSQ 64
++D+ ++QR W+ +R ++ +++ + N++ +LF N++ GR + C++ +
Sbjct: 6 IQDED-IKFQRENWEMIRSHVSPIISNLTMDNLQESHRDLFQVNILIGRNIICKNVVDFT 64
Query: 65 MASPG--FTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIAHL 122
+ +AL+A++N+ +GE L K ++L + + R D ++ ++ L
Sbjct: 65 LNKQNGRLIPALSALIALLNSDIPDIGETLAKELMLMFVQQFNRKDYVSCGNILQCLSIL 124
Query: 123 VNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRGIL 182
V H +S+ + + +K CG L +S K I+E+ R IL
Sbjct: 125 FLYDVIHEIVILQILLLLLEK---NSLRLVIAVMKICGWKLALVSKKTHDMIWEKLRYIL 181
Query: 183 HEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVDIEDQL--THEISLQDEIDPEIT 240
E+ ++ +E LF IR+ + Y + L ++D TH + DE +
Sbjct: 182 QTQELSSTLRESLETLFEIRQ---KDYKSGSQGLFILDPTSYTVHTHSYIVSDEDEANKE 238
Query: 241 LDIFKPDPNFLDNEKRYEDMKKDLL 265
L F+ NF + ++ +++ LL
Sbjct: 239 LGNFEKCENFNELTMAFDTLRQKLL 263
>TAIR|locus:504956291 [details] [associations]
symbol:AT1G52325 "AT1G52325" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 GO:GO:0003743 InterPro:IPR003891
Pfam:PF02847 IPI:IPI00525693 RefSeq:NP_683421.1 UniGene:At.20580
UniGene:At.52154 EnsemblPlants:AT1G52325.1 GeneID:841663
KEGG:ath:AT1G52325 OMA:ETFESIF PhylomeDB:F4ICW3 Uniprot:F4ICW3
Length = 145
Score = 250 (93.1 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 49/75 (65%), Positives = 63/75 (84%)
Query: 428 EDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRDNPKNTRFAINFFT 487
ED+TSSS IF+K LF +LSE L I+LLNE+L DPTM+++FESIFP+D+ KNT F+I FFT
Sbjct: 46 EDSTSSSLIFLKTLFLQLSELLRIKLLNEKLQDPTMEETFESIFPKDHRKNTLFSIIFFT 105
Query: 488 SIGLGGITENLREYL 502
IGLGGIT+ LR+ +
Sbjct: 106 KIGLGGITQTLRQLI 120
Score = 183 (69.5 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 32/44 (72%), Positives = 40/44 (90%)
Query: 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYY 362
MSS+DFEEAGHKLLKI+LE GQ MELC+M+LECC++E+TY +Y
Sbjct: 1 MSSLDFEEAGHKLLKIRLEQGQGMELCVMVLECCTEEKTYRSFY 44
>UNIPROTKB|F1LX25 [details] [associations]
symbol:F1LX25 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0016070 "RNA metabolic process"
evidence=IEA] InterPro:IPR016021 InterPro:IPR016024 SUPFAM:SSF48371
GO:GO:0016070 Gene3D:1.25.40.180 IPI:IPI00948250
Ensembl:ENSRNOT00000065422 Uniprot:F1LX25
Length = 211
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 71/170 (41%), Positives = 113/170 (66%)
Query: 96 IVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGF 155
++L ++ Y+RND+ L A KF+AHL+NQ V H PTDDSVEVA F
Sbjct: 1 LILNFRKGYQRNDQ-LCLTASKFVAHLINQNVPHEVLCLEMLTLLLERPTDDSVEVADDF 59
Query: 156 VKECGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPE 215
++ECG + ++ +G++ IF+ R ILHE ++KRVQ++IE +FA+RK F+G+P +
Sbjct: 60 LRECGLLAPGVT-RGINAIFD-LRNILHE--VNKRVQYMIEVMFAVRKDGFKGHPVILEG 115
Query: 216 LDLVDIEDQLTHEISLQDEIDPEITLDIFKPDPNFLDNEKRYEDMKKDLL 265
LDLV+ + Q T + L+D +PE +++FK DPNF++N ++Y+ +KK++L
Sbjct: 116 LDLVEEDCQFTQMLPLEDNYNPE-DVNVFKTDPNFMENGEKYKVIKKEIL 164
>UNIPROTKB|F1M323 [details] [associations]
symbol:F1M323 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 IPI:IPI00562844
Ensembl:ENSRNOT00000029211 OMA:IERRVEY Uniprot:F1M323
Length = 226
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 77/230 (33%), Positives = 121/230 (52%)
Query: 96 IVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGF 155
++ + + ++RNDK + L A KF+AHL+NQ VAH PTDDSVEVA+GF
Sbjct: 1 LLFNIVKGHQRNDKQRCLTASKFVAHLINQNVAHEVLCLEMLTLLLERPTDDSVEVALGF 60
Query: 156 VKECGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPE 215
+KECG L ++ +G ILH+ EI+ RVQ++IE + A K +F+ +
Sbjct: 61 LKECGLKLARVTKRG---------NILHDSEINTRVQYMIEVMLA--KDRFKDQSVILEG 109
Query: 216 LDLVDIEDQLTHEISLQDEIDPEITLDIFKPDPNFLDNEKRYEDMKKDLLXXXXXXXXXX 275
LDL++ TH +SL+D+ PE L++FK P+F++NE++Y+ +K ++L
Sbjct: 110 LDLLEEGGHFTHMLSLEDDYSPEDVLNVFKTGPSFMENEEKYKAIKNEILDEGDSDSNTD 169
Query: 276 XXXXXXXXXXXXXXXXXXXXQ----MKIKDETETNLVNLRRTIYLTIMSS 321
+ + I+D TE +LV+ T YL I S+
Sbjct: 170 REVGNSEEEEEEEEEVEGQEEGGQKVIIRDRTEISLVSFHHTTYLAIQST 219
>UNIPROTKB|E1B8C2 [details] [associations]
symbol:LOC618228 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 OMA:LSLIFTR EMBL:DAAA02012148
EMBL:DAAA02012149 IPI:IPI00839345 Ensembl:ENSBTAT00000043572
Uniprot:E1B8C2
Length = 847
Score = 212 (79.7 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 52/155 (33%), Positives = 81/155 (52%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR I+ T+M+S DF +A KLLK+ L+ QE E+ +L++CC QE+TY +Y L +
Sbjct: 647 DVRRNIFCTVMTSEDFLDAFEKLLKLGLKDQQEREIVHVLVDCCLQEKTYNPFYAFLAGK 706
Query: 369 FCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEE 428
FC + Q F+ ++ + L N+ AHLL T +LP +L + +E
Sbjct: 707 FCAYERRFQMTFQFSIWDKFRDLENLSATSFANLVHLVAHLLKTKSLPLSLLKVVEFSEL 766
Query: 429 DTTSSS--RIFIKILFQELS-EHLGIRLLNERLTD 460
D R + IL E E LG L+ R++D
Sbjct: 767 DKPRVHFLRKVLHILLMETEVEDLG--LIFARVSD 799
Score = 101 (40.6 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 54/230 (23%), Positives = 96/230 (41%)
Query: 2 MKDVEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFAENLIRGRG------- 54
++ VE+ A+ ++ + L+K + GL+N+++ N+ +I +L E L G
Sbjct: 336 VRRVEETEDAQ-KKEELERLKKQVKGLINRLSEPNLASISSQL--EELYMGHSRKDMNAT 392
Query: 55 ---LFCRSCMKSQMASPGFTDVFAALVAVVN-TKFTAVGELLLKRIVLQLKRAYK-RNDK 109
+ +C + LV+V++ T VG L+ +V + AYK R D
Sbjct: 393 LTTVVLSACAPDTVMPARLLMEHVLLVSVLHRTVGLEVGAHFLEAVVRRFDDAYKSRRDG 452
Query: 110 PQLLAAVKFIAHLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECG-SILQD--L 166
+ IAHL N V + T+ +E+ + +K G S+ +D L
Sbjct: 453 KECDNLFAVIAHLYNFHVVQSLLIFDVLRKLVESFTEKDIELILLMLKTVGFSLRKDDAL 512
Query: 167 SPKGLHGIFE-RFRGILHEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPE 215
S K L + + G RV+F++E L A++ + P PE
Sbjct: 513 SLKELITETQAKASGAGGRFRDQTRVRFMLETLLALKNNDVRKIPGYDPE 562
>UNIPROTKB|F1P1C9 [details] [associations]
symbol:NOM1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 OMA:LSLIFTR EMBL:AADN02000357
IPI:IPI00581152 Ensembl:ENSGALT00000010388 Uniprot:F1P1C9
Length = 825
Score = 190 (71.9 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 51/167 (30%), Positives = 82/167 (49%)
Query: 298 KIKDETETNLVN--LRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE 355
KI D +N +RR+I+ +M+S DF +A KLLK+ L+ QE E+ ++L CC QE
Sbjct: 605 KIMDLARKQRMNTDIRRSIFCVLMTSEDFMDAFEKLLKLGLKDQQEREIVHVILYCCLQE 664
Query: 356 RTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHAL 415
+TY +Y L + C + Q F+ + + L + + N+ HL+ T +L
Sbjct: 665 KTYNPFYAFLASKICGYERRFQVTFQFSIWDKIRDLGNLSASAISNLVSLLVHLVRTKSL 724
Query: 416 PWHVLAYIRLTEEDTTSSSRIFIKILFQEL--SEHLGIRLLNERLTD 460
P VL I + D R ++L L ++H I + RL+D
Sbjct: 725 PLSVLKVIEFGDLDKPKV-RFLRQVLTMLLVKTDHDDINDIFGRLSD 770
Score = 120 (47.3 bits), Expect = 4.2e-19, Sum P(2) = 4.2e-19
Identities = 66/259 (25%), Positives = 120/259 (46%)
Query: 5 VEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNI---IPELFAENLIRGRG-----LF 56
++DK E RL +K +NGL+N+++ N+ +I + EL+ N + +
Sbjct: 314 LDDKKREELGRL-----KKMVNGLINRLSEPNLSSITGQLEELYMANSRKDMNETLTSIL 368
Query: 57 CRSCMKSQMASPGFTDV-FAALVAVVN-TKFTAVGELLLKRIVL---QLKRAYKRNDKPQ 111
+C+ + +A P + LV+V++ T T VG L+ +V +L R+ + +
Sbjct: 369 MNACVTA-VAMPARLMMEHVLLVSVLHHTVGTEVGAHFLEAVVKKFDELSRSDAEGKECE 427
Query: 112 LLAAVKFIAHLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECG-SILQD--LSP 168
L A+ IAHL N V H + T+ +E+ + +K G S+ +D L+
Sbjct: 428 NLLAL--IAHLYNFHVVHCLLIFDILKKLVSSFTEKDIELILFLLKNVGFSLRKDDALAL 485
Query: 169 KGLHGIFE-RFRGILHEGEI-DK-RVQFLIEGLFAIRKAKFQGYPAVRPEL--DLVDIED 223
K L I E + + E E+ D+ RV+F++E + A+R + P P+ L ++
Sbjct: 486 KDL--ISEAQSKANTAEKELKDQTRVRFMLETMLALRNNDMRKIPGYDPQPVEKLRKLQR 543
Query: 224 QLTHEISLQDEIDPEITLD 242
L H S E ++L+
Sbjct: 544 TLVHSSSSGKETQLRVSLE 562
>MGI|MGI:1861749 [details] [associations]
symbol:Nom1 "nucleolar protein with MIF4G domain 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0016070 "RNA metabolic process" evidence=IEA]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 MGI:MGI:1861749 SUPFAM:SSF48371
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 eggNOG:NOG300777 GeneTree:ENSGT00550000075087
CTD:64434 HOGENOM:HOG000044155 HOVERGEN:HBG098839 OMA:LSLIFTR
OrthoDB:EOG4CRKZQ EMBL:AK148406 EMBL:AC171500 IPI:IPI00652660
RefSeq:NP_001028629.2 UniGene:Mm.262815 ProteinModelPortal:Q3UFM5
STRING:Q3UFM5 PhosphoSite:Q3UFM5 PRIDE:Q3UFM5
Ensembl:ENSMUST00000001611 GeneID:433864 KEGG:mmu:433864
UCSC:uc008wuj.1 InParanoid:Q3UFM5 NextBio:409051 Bgee:Q3UFM5
CleanEx:MM_GM1040 Genevestigator:Q3UFM5 Uniprot:Q3UFM5
Length = 854
Score = 214 (80.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 58/171 (33%), Positives = 85/171 (49%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR I+ T+M+S DF +A KLLK+ L+ QE E+ +L++CC QE+TY +Y L +
Sbjct: 648 DVRRIIFCTLMTSEDFLDAFEKLLKLGLKDQQEREIVHILMDCCLQEKTYNPFYAFLASK 707
Query: 369 FCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEE 428
FC + Q F+ ++ + L K N+ AHLL T +LP VL + +E
Sbjct: 708 FCDYERRFQMTFQFSIWDKFRDLENLPDTKFSNLVHLLAHLLRTKSLPLSVLKVVEFSEL 767
Query: 429 DTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPR--DNPK 477
D R+ H R+L L + T D IF R DNPK
Sbjct: 768 D---KPRV-----------HFLRRVLTALLME-TEDDDLAVIFSRVSDNPK 803
Score = 90 (36.7 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 49/213 (23%), Positives = 93/213 (43%)
Query: 19 DALRKSINGLVNKVNATNIKNI---IPELFAENLIRGRG-----LFCRSCMK-SQMASPG 69
D L+K + GL+N+++ N+ +I + EL+ + + +C+ S M S
Sbjct: 353 DRLKKHVKGLINRLSEPNMASISGQLEELYMAHSRKDMNDTLTTALMDACVTASAMPSRL 412
Query: 70 FTD-VFAALVAVVN-TKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAV-KFIAHLVNQQ 126
+ VF LV++++ T VG L+ +V + Y+ + + L + IAHL N
Sbjct: 413 MMEHVF--LVSILHHTVGIEVGACFLEAVVKKFDAIYRDGGEGKELDNLFTMIAHLYNFH 470
Query: 127 VAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQD---LSPKGLHGIFE-RFRGIL 182
V T+ +E+ + +K G L+ LS K L + + G
Sbjct: 471 VVQSILIFDILKKLVGTFTEKDIELILLMLKNVGFALRKDDALSLKELITEAQTQASGAG 530
Query: 183 HEGEIDKRVQFLIEGLFAIRKAKFQGYPAVRPE 215
++ + RV+F++E + A++ + P PE
Sbjct: 531 NKFQDQNRVRFMLETMLALKNNDLRKIPGYNPE 563
>UNIPROTKB|Q5C9Z4 [details] [associations]
symbol:NOM1 "Nucleolar MIF4G domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371
GO:GO:0005730 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 InterPro:IPR003891 Pfam:PF02847 SMART:SM00544
PROSITE:PS51366 eggNOG:NOG300777 EMBL:AY576779 EMBL:AF107455
EMBL:BC007902 IPI:IPI00145593 RefSeq:NP_612409.1 UniGene:Hs.15825
ProteinModelPortal:Q5C9Z4 IntAct:Q5C9Z4 MINT:MINT-1185381
STRING:Q5C9Z4 PhosphoSite:Q5C9Z4 DMDM:74707675 PaxDb:Q5C9Z4
PRIDE:Q5C9Z4 DNASU:64434 Ensembl:ENST00000275820 GeneID:64434
KEGG:hsa:64434 UCSC:uc003wmy.3 CTD:64434 GeneCards:GC07P156742
HGNC:HGNC:13244 MIM:611269 neXtProt:NX_Q5C9Z4 PharmGKB:PA25946
HOGENOM:HOG000044155 HOVERGEN:HBG098839 InParanoid:Q5C9Z4
OMA:LSLIFTR OrthoDB:EOG4CRKZQ GenomeRNAi:64434 NextBio:66459
Bgee:Q5C9Z4 CleanEx:HS_NOM1 Genevestigator:Q5C9Z4 Uniprot:Q5C9Z4
Length = 860
Score = 208 (78.3 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 50/154 (32%), Positives = 80/154 (51%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR I+ TIM+S DF +A KLLK+ L+ QE E+ +L++CC QE+TY +Y L +
Sbjct: 654 DIRRNIFCTIMTSEDFLDAFEKLLKLGLKDQQEREIIHVLMDCCLQEKTYNPFYAFLASK 713
Query: 369 FCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEE 428
FC + Q F+ ++ + L N+ AHLL T +L +L + +E
Sbjct: 714 FCEYERRFQMTFQFSIWDKFRDLENLPATNFSNLVHLVAHLLKTKSLSLSILKVVEFSEL 773
Query: 429 DTTSSS--RIFIKILFQELSEHLGIRLLNERLTD 460
D R + IL E +E + L+ R++D
Sbjct: 774 DKPRVRFLRKVLSILLME-TEVEDLSLIFTRVSD 806
Score = 82 (33.9 bits), Expect = 4.2e-17, Sum P(2) = 4.2e-17
Identities = 44/211 (20%), Positives = 88/211 (41%)
Query: 19 DALRKSINGLVNKVNATNIKNI---IPELFAENLIRGRG-----LFCRSCMKSQMASPGF 70
+ L+K + GL+N+++ N+ +I + EL+ + + +C+ +
Sbjct: 359 ERLKKHVKGLLNRLSEPNMASISGQLEELYMAHSRKDMNDTLTSALMGACVTASAMPSRL 418
Query: 71 TDVFAALVAVVN-TKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAV-KFIAHLVNQQVA 128
LV++++ T VG L+ +V + YK + + + IAHL N V
Sbjct: 419 MMEHVLLVSILHHTVGIEVGAHFLEAVVRKFDAIYKYGSEGKECDNLFTVIAHLYNFHVV 478
Query: 129 HXXXXXXXXXXXXXNPTDDSVEVAVGFVKECG-SILQD--LSPKGLHGIFE-RFRGILHE 184
T+ +E+ + +K G S+ +D LS K L + + G E
Sbjct: 479 QSLLIFDILKKLIGTFTEKDIELILLMLKNVGFSLRKDDALSLKELITEAQTKASGAGSE 538
Query: 185 GEIDKRVQFLIEGLFAIRKAKFQGYPAVRPE 215
+ R++F++E + A++ + P PE
Sbjct: 539 FQDQTRIRFMLETMLALKNNDMRKIPGYDPE 569
>ZFIN|ZDB-GENE-060503-321 [details] [associations]
symbol:nom1 "nucleolar protein with MIF4G domain 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
ZFIN:ZDB-GENE-060503-321 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
GeneTree:ENSGT00550000075087 EMBL:BX247878 IPI:IPI00486578
Ensembl:ENSDART00000115152 ArrayExpress:F1REG2 Bgee:F1REG2
Uniprot:F1REG2
Length = 835
Score = 179 (68.1 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 40/137 (29%), Positives = 71/137 (51%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR I+ +MSS DF +A KLL++ L+ QE E+ +L++CC QE+ + R+Y +L ++
Sbjct: 628 DVRRNIFCVLMSSEDFLDAYEKLLRLGLKDQQEREIVHVLMDCCLQEKMFNRFYAVLAEK 687
Query: 369 FCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEE 428
C ++ Q F+ ++ + L N+ + HLL +L +L I E
Sbjct: 688 LCSHDRRFQMTFQFSLWDKFRDLANLSNRSFSNLVQLVTHLLHRKSLSLSILKAIEFGEL 747
Query: 429 DTTSSSRIFIKILFQEL 445
D F+K + +L
Sbjct: 748 DKPKVK--FLKQILSKL 762
Score = 111 (44.1 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
Identities = 48/212 (22%), Positives = 88/212 (41%)
Query: 19 DALRKSINGLVNKVNATNIKNI---IPELFAENLIRGRG-----LFCRSCMKSQMASPGF 70
+ L++S+ GL+N+++ N+ +I + EL+ + + +C+ +
Sbjct: 331 EKLKRSVKGLINRLSQPNMASISSQLEELYMNTSRKDMNDTLTDILLAACVTPALMPERL 390
Query: 71 TDVFAALVAVVNTKF-TAVGELLLKRIVLQLKRAYKRND--KPQLLAAVKFIAHLVNQQV 127
LV+V++ VG L+ +V Q R Y D + V IAHL N V
Sbjct: 391 LMEHILLVSVLHYSVGLEVGAHFLETVVRQFDRIYSELDGTDKECDNLVSIIAHLYNFHV 450
Query: 128 AHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIF-ERFRGILHEGE 186
H + + +E+ + +K G L+ P L + E R EGE
Sbjct: 451 VHAVLVFDILKKLVTSFSSKDIELLLLVLKTVGFALRKDDPIALKELISEAQRKASAEGE 510
Query: 187 I--DK-RVQFLIEGLFAIRKAKFQGYPAVRPE 215
D+ R++F++E + A++ + P PE
Sbjct: 511 QFQDQTRIRFMLETMMALKNNDMRKIPGYDPE 542
>TAIR|locus:2161548 [details] [associations]
symbol:AT5G17930 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:CP002688
GenomeReviews:BA000015_GR SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 eggNOG:NOG300777
EMBL:AK176239 EMBL:AK226805 IPI:IPI00520460 RefSeq:NP_197295.2
UniGene:At.51059 ProteinModelPortal:Q67Z79 PaxDb:Q67Z79
PRIDE:Q67Z79 EnsemblPlants:AT5G17930.1 GeneID:831661
KEGG:ath:AT5G17930 TAIR:At5g17930 HOGENOM:HOG000029976
InParanoid:Q67Z79 OMA:ASKLCEH PhylomeDB:Q67Z79
ProtClustDB:CLSN2721764 ArrayExpress:Q67Z79 Genevestigator:Q67Z79
Uniprot:Q67Z79
Length = 784
Score = 194 (73.4 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 43/153 (28%), Positives = 80/153 (52%)
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
+K+ + N + R+ I+ IMSS D+ +A KLL++ L Q+ E+ +L+ECC QE+
Sbjct: 574 LKLAEAQRMN-TDSRKAIFCVIMSSEDYIDAFEKLLRLDLPGKQDREIMRVLVECCLQEK 632
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALP 416
+ ++Y +L + C +K H+ + C + + + + ++AKF A ++ T L
Sbjct: 633 AFNKFYTVLASKLCEHDKNHKFTLQYCIWDHFKELESMSLQRSMHLAKFVAEIIVTFNLS 692
Query: 417 WHVLAYIRLTEEDTTSSSRIF-IKILFQELSEH 448
VL + L + RI ++LF+ + EH
Sbjct: 693 LAVLKSVDLANPVELTPKRIMHFRMLFEAIFEH 725
Score = 66 (28.3 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 28/126 (22%), Positives = 56/126 (44%)
Query: 5 VEDKSSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPELFA--ENLIRGRG--LFCRSC 60
+ ++ +E + LT +R I GL+NK+ +N++ I EL ++ R +FC
Sbjct: 287 LRSQAKSESEELT--KMRTRIKGLLNKMAESNVETITAELATIYRSVARSVSSQIFCEEV 344
Query: 61 MKSQMASPGFTDVFAALVA----VVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLAAV 116
+ + VFA+ +A +V F+A L+ + + Y++ D L
Sbjct: 345 LTTYARGNEQYAVFASFIAGMACLVGMDFSAK---LIASLAKSFEDEYQKEDSLSLNGIS 401
Query: 117 KFIAHL 122
+++L
Sbjct: 402 LLLSYL 407
Score = 49 (22.3 bits), Expect = 7.4e-15, Sum P(3) = 7.4e-15
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 467 FESIFPRDNPKNTRFAINFFTSIGLGGITENLREYLK 503
FE+IF ++P+N + N FT I L E LR+ +K
Sbjct: 719 FEAIF--EHPENLVW--NLFTRIALNPEYEALRDGIK 751
Score = 41 (19.5 bits), Expect = 2.6e-12, Sum P(3) = 2.6e-12
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 69 GFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRND 108
G D+F L +V+++ + +G+ KR + KR+ ++ D
Sbjct: 155 GLNDLFEGLPSVLDSMGSELGDSRKKR---KKKRSEEKQD 191
>DICTYBASE|DDB_G0284539 [details] [associations]
symbol:DDB_G0284539 "Nucleolar MIF4G
domain-containing protein 1" species:44689 "Dictyostelium
discoideum" [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
dictyBase:DDB_G0284539 SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723
GO:GO:0016070 Gene3D:1.25.40.180 EMBL:AAFI02000066
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
eggNOG:NOG300777 OMA:WIMESGY RefSeq:XP_638563.1
ProteinModelPortal:Q54PG9 EnsemblProtists:DDB0186073 GeneID:8624655
KEGG:ddi:DDB_G0284539 InParanoid:Q54PG9 ProtClustDB:CLSZ2499005
Uniprot:Q54PG9
Length = 998
Score = 177 (67.4 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 60/234 (25%), Positives = 111/234 (47%)
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
MK+ + N +LR++I+ +MSS D+ +A K++++KL+ Q+ E+ +L+ CC +E+
Sbjct: 766 MKLAIANKMN-TDLRKSIFCILMSSEDYLDAFDKIMELKLKDKQDREVIHVLMHCCLKEK 824
Query: 357 TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSM---IHRLETN-------KLRNVAKFF 406
+ YY L R C+ H NF+ F QY + + LE++ ++ N + F
Sbjct: 825 KFNAYYYHLAHRLCL----HDNNFK--FTLQYDIWDQLKELESSEQSSQISRVNNFSNFL 878
Query: 407 AHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQEL---SEHLGIRLLNERLTDPTM 463
A L+ H +L + L ++ + +F +ILF L + + ERL T
Sbjct: 879 ARLIENHVFSLTILRVLDLNQQ-LSPIQILFFRILFTHLLTLPNESDVSTIFERLISSTQ 937
Query: 464 QDSFESIFPRDNPKNTRFAINFFTSIGLGGIT---ENLREYLKNMPRLIMQQQK 514
+ + N + + I+ F GL + ++ + LKN +L+ Q K
Sbjct: 938 NKISATKESQANALSLKKGISLFFMHGLLSDSMPRDDKYKLLKNRIKLVKQVLK 991
Score = 51 (23.0 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 21 LRKSINGLVNKVNATN---IKNIIPELFAEN 48
L++ INGL+NK+ N I N I +LF N
Sbjct: 441 LKRRINGLLNKLAINNFYAIFNEIHDLFNTN 471
Score = 47 (21.6 bits), Expect = 8.3e-11, Sum P(3) = 8.3e-11
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 174 IFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQ--GY-PAVRPELDLVDIEDQLTHEIS 230
IF+ + + E +D +Q L L I+ A +Q G PA ++ L+ + QL +
Sbjct: 572 IFDMAKNFI-ESFLDIDIQLL---LLLIQNAGYQLRGEDPATLKDIILLVQKKQLEQKQK 627
Query: 231 LQDEIDPEITLDIFKPDPNFLDNEKR 256
QDEI I D K L +E++
Sbjct: 628 RQDEILNNINSDN-KTKSQLLQDEEK 652
>CGD|CAL0001070 [details] [associations]
symbol:SGD1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006972 "hyperosmotic response"
evidence=IEA] [GO:0042274 "ribosomal small subunit biogenesis"
evidence=IEA] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 CGD:CAL0001070
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
Gene3D:1.25.40.180 EMBL:AACQ01000090 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 RefSeq:XP_715139.1
ProteinModelPortal:Q5A077 STRING:Q5A077 GeneID:3643191
KEGG:cal:CaO19.4363 Uniprot:Q5A077
Length = 1011
Score = 125 (49.1 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 297 MKIKDETETNLVNLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER 356
M++ N ++RR I+++IMS+ D+ +A KL K+ L+ QE E+ +L+ C + E
Sbjct: 752 MELAKSQRMN-TDIRRAIFVSIMSANDYIDAVTKLDKLALKRNQEREIPKVLIHCATMEP 810
Query: 357 TYLRYYGLLGQRFC 370
++ YYG+LG + C
Sbjct: 811 SWNPYYGVLGNKLC 824
Score = 85 (35.0 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 40/200 (20%), Positives = 83/200 (41%)
Query: 21 LRKSINGLVNKVNATNIKNIIPELFAENLIRGRGLF---CRSCMKSQMASPG-FTDVFAA 76
LRKSI G +NK++ NI +I+ E+ A L R + + + G D F
Sbjct: 473 LRKSIKGPLNKLSEANISSIVSEINALYLSHPRQTLNEEITNIILDSIVQQGRLLDTFVY 532
Query: 77 L-----VAVVNTKFTAVGELLLKRIVLQLKRAYKRNDKPQLLA-AVKFIAHLVNQQVAHX 130
L VA+ + G ++ IV + + + + K + + + ++ + Q+
Sbjct: 533 LHATVVVALYRLQGVEFGAHFIQTIVEKFETSKTESSKTKEASNIISLLSSVYLFQLVSS 592
Query: 131 XXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG---ILHEGEI 187
N +++ ++ + ++ G+ ++ P L I G L + +
Sbjct: 593 KLLYDLIKELINNLDENNADLLLRLIRNSGNQMRSDDPSALKEIVLLINGKASTLPKDAV 652
Query: 188 DKRVQFLIEGLFAIRKAKFQ 207
+ R QFLIE + +++ K +
Sbjct: 653 NTRTQFLIETISSLKNNKLK 672
Score = 58 (25.5 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
Identities = 14/59 (23%), Positives = 30/59 (50%)
Query: 395 ETNKLR---NVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLG 450
E NK++ N+ +F+ LL ++P H L + +S + +F+++L + +G
Sbjct: 866 EENKMKRILNLGRFYGFLLAEGSMPLHNLRTVNFLT--ASSDTVLFLEVLLVSFFDQVG 922
Score = 41 (19.5 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 215 ELDLVDIEDQLTHEISLQDEIDPEITLDIFKPDPNFLDNEKRYED 259
E ++ +I D IS +DE D E F D + D+EK E+
Sbjct: 388 ESEMENISDTADEHISEEDEEDDEY----FSDDVD--DSEKMKEN 426
Score = 41 (19.5 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 156 VKECGSILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIR--KAKFQGYPAVR 213
VKE +L+D L G E G ++ + D+ I+ + A+R K K +G
Sbjct: 143 VKE-DELLED-EVSDL-GYSEDDLGSENKEDFDEDENIDIDPMEALRALKEKKKGVNKAS 199
Query: 214 PELDLVDIEDQLTHE---IS----LQDEIDPEITLDIFKPDPNFLDNEKRYEDMKKD 263
++ +V ED L E IS L++E DP L + K N +K+D
Sbjct: 200 SDIRIVK-EDDLEQEDDDISDFEELEEENDPLEALRLLKSKKNKPTKTSEIRIVKED 255
Score = 40 (19.1 bits), Expect = 3.7e-05, Sum P(3) = 3.7e-05
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 216 LDLVDIEDQLTHEISLQDEIDPEITLDIFKPDPNFLDNEKRYEDMKKD 263
LD +D++ + E ++ D D I+ + + D F D+ E MK++
Sbjct: 380 LDGLDLDFESEME-NISDTADEHISEEDEEDDEYFSDDVDDSEKMKEN 426
>POMBASE|SPAC24C9.11 [details] [associations]
symbol:SPAC24C9.11 "ribosome small subunit biogenesis
protein (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO;IDA] [GO:0016070 "RNA metabolic process"
evidence=IEA] [GO:0042274 "ribosomal small subunit biogenesis"
evidence=ISO] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 PomBase:SPAC24C9.11
EMBL:CU329670 SUPFAM:SSF48371 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0003723 GO:GO:0016070
GO:GO:0042274 Gene3D:1.25.40.180 InterPro:IPR003891 Pfam:PF02847
SMART:SM00544 PROSITE:PS51366 eggNOG:NOG300777 PIR:T38352
RefSeq:NP_594036.1 ProteinModelPortal:O13971 STRING:O13971
EnsemblFungi:SPAC24C9.11.1 GeneID:2541610 KEGG:spo:SPAC24C9.11
OMA:THCAMEE OrthoDB:EOG4FN7S9 NextBio:20802704 Uniprot:O13971
Length = 775
Score = 123 (48.4 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 32/151 (21%), Positives = 75/151 (49%)
Query: 310 LRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRF 369
LR +I++ ++ S D+ +A ++LK+ L+ Q E+ ++L C E+ Y +YGL+ +
Sbjct: 566 LRTSIFVALVGSEDYIDAWERVLKLHLKRNQLPEIAYVILHCVGNEKLYNPFYGLVALKC 625
Query: 370 CMINKVHQENFEKCFVQQYSMIH--------RLETNKLRNVAKFFAHLLGTHALPWHVLA 421
C + +++F+ ++ + + ++ N+AK +A L+ A P +L
Sbjct: 626 CTLQHNLKKSFQFSLWDFFNELQPDDDSEEREISMRRIVNLAKLYASLVIEAAQPLTILK 685
Query: 422 YIRLTEEDTTSSSRIFIKILFQELSEHLGIR 452
++ + + F+ + F ++ LG++
Sbjct: 686 HVDFMA--INAQMQTFLLVFFTDII--LGVK 712
Score = 91 (37.1 bits), Expect = 8.7e-09, Sum P(2) = 8.7e-09
Identities = 40/169 (23%), Positives = 67/169 (39%)
Query: 21 LRKSINGLVNKVNATNIKNIIPE---LFAENLIRG-RGLFCRSCMKSQMASPGFTDVFAA 76
LR+ + G +NK++ NI +II E L+ EN +++ M D A
Sbjct: 261 LRRKLQGSLNKLSIANISSIIKEIEVLYMENSRHSVTSTITNLLLQTVMGRESMLDQLAI 320
Query: 77 LVAVVNTKFTAV-----GELLLKRIVLQLKRAYKRNDKPQLLA------AVKFIAHLVNQ 125
+ A + T + G LL+ +V + + YK +K L + + F L N
Sbjct: 321 VYAALATALYRIVGNDFGAHLLQTLVERFLQLYKSKEKEPLSSHKETSNLIVFFVELYNF 380
Query: 126 QVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKGLHGI 174
Q+ + T+ +VE+ + V CG L+ P L I
Sbjct: 381 QLVSCVLVYDLIRLFLRSLTELNVEMLLKIVLNCGGQLRSDDPTSLQDI 429
>ASPGD|ASPL0000072929 [details] [associations]
symbol:AN4581 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016070 "RNA metabolic
process" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003890
InterPro:IPR016021 InterPro:IPR016024 Pfam:PF02854 SMART:SM00543
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0003723 EMBL:BN001303
GO:GO:0016070 Gene3D:1.25.40.180 EMBL:AACD01000078
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
eggNOG:NOG300777 OMA:THCAMEE OrthoDB:EOG4FN7S9 RefSeq:XP_662185.1
ProteinModelPortal:Q5B4E9 STRING:Q5B4E9
EnsemblFungi:CADANIAT00005856 GeneID:2872380 KEGG:ani:AN4581.2
HOGENOM:HOG000184884 Uniprot:Q5B4E9
Length = 844
Score = 130 (50.8 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR+I++ IMS+ DF++A +LLK++L+ QE E+ +L C +E + YY L+ +R
Sbjct: 597 DVRRSIFVAIMSATDFQDAHVRLLKLRLKRAQEFEIPRVLTHCAMEEDAHNPYYTLIARR 656
Query: 369 FC 370
C
Sbjct: 657 LC 658
Score = 62 (26.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 45/220 (20%), Positives = 90/220 (40%)
Query: 9 SSAEYQRLTWDALRKSINGLVNKVNATNIKNIIPE---LFAE----NLIRGR-----GLF 56
SS+E + LT LR+ G +NK++ N+ +I+ E L+ E N+ GL
Sbjct: 281 SSSESESLT--RLRRQAQGHLNKLSEANLVSILAEFEKLYREYPRQNVTSTLVTLLFGLI 338
Query: 57 C-RSCMKSQ--MASPGFTDVFAALVAVVNTKFTAVGELLLKRIVLQLKRAYKRNDK---P 110
C RS ++ + GF AA+ V+ F G ++++IV K
Sbjct: 339 CERSALQDTFIILHAGF---IAAVYKVMGMDF---GAEIVQKIVETFDAGGDDRGKFEGK 392
Query: 111 QLLAAVKFIAHLVNQQVAHXXXXXXXXXXXXXNPTDDSVEVAVGFVKECGSILQDLSPKG 170
+++ + ++ L N V + +D+ E+ + ++ G L+ P
Sbjct: 393 EMINLISLLSQLYNFHVVGSTLVFDYIRLFLQDINEDNTELLLKVIRNSGPQLRQDDPSS 452
Query: 171 LHGIFERFR-GILHEG--EIDKRVQFLIEGLFAIRKAKFQ 207
L I + + G + R +F+I+ + ++ + +
Sbjct: 453 LKDIVLLIQPAVTKAGTASLSVRTKFMIDTITDLKNNRLK 492
>FB|FBgn0035336 [details] [associations]
symbol:CG9004 species:7227 "Drosophila melanogaster"
[GO:0016070 "RNA metabolic process" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 EMBL:AE014296
SUPFAM:SSF48371 GO:GO:0005730 GO:GO:0022008 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 EMBL:BT010298
RefSeq:NP_647717.1 UniGene:Dm.11397 ProteinModelPortal:Q9W020
MINT:MINT-313743 STRING:Q9W020 PaxDb:Q9W020 PRIDE:Q9W020
EnsemblMetazoa:FBtr0072890 GeneID:38303 KEGG:dme:Dmel_CG9004
UCSC:CG9004-RA FlyBase:FBgn0035336 eggNOG:NOG300777
GeneTree:ENSGT00550000075087 InParanoid:Q9W020 OMA:WIMESGY
OrthoDB:EOG4J9KDZ PhylomeDB:Q9W020 GenomeRNAi:38303 NextBio:807950
Bgee:Q9W020 Uniprot:Q9W020
Length = 854
Score = 133 (51.9 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 311 RRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRFC 370
RR I+ IMS+ D+ +A K+L + L+ + + +++ C E+ YY L +FC
Sbjct: 652 RRNIFCIIMSAADYVDAFEKILHLSLK--DQRAVAYVIIHCALNEKRANPYYAHLALKFC 709
Query: 371 MINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDT 430
N+ +Q F+ + + I +L ++RN+A F ++ L VL + + D
Sbjct: 710 QFNRKYQLAFQFASWDRINDIEKLSKPQIRNLASFLQQVILAAGLQLSVLKVVDFMQLDK 769
Query: 431 TS 432
S
Sbjct: 770 LS 771
Score = 48 (22.0 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 10 SAEYQRLTWDALRKSINGLVNKVNATNIKNI---IPELFAEN 48
S+E Q L K GL+N+++ N+ I I EL+ +N
Sbjct: 340 SSEKQAEILARLLKQCKGLLNRLSEANLHKIAAGIEELYMKN 381
Score = 46 (21.3 bits), Expect = 1.4e-05, Sum P(3) = 1.4e-05
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 145 TDDSVEVAVGFVKECGSILQDLSPKGLHGI 174
++ E+ +K+C +L LS LH I
Sbjct: 341 SEKQAEILARLLKQCKGLLNRLSEANLHKI 370
Score = 45 (20.9 bits), Expect = 9.1e-06, Sum P(3) = 9.1e-06
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 190 RVQFLIEGLFAIRKAKFQGYPAVRPEL 216
R++F+++ L A++ Q P PEL
Sbjct: 538 RLRFMVDILNAVKNNNMQKLPQYDPEL 564
Score = 41 (19.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 217 DLVDIEDQLTHEISLQDEIDPEITLDIF 244
DL E+Q + E S Q+E P+I DI+
Sbjct: 273 DLTGEEEQ-SEEDSEQEENAPKIKEDIY 299
>UNIPROTKB|G4N7G4 [details] [associations]
symbol:MGG_13527 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR003890 InterPro:IPR016021 InterPro:IPR016024
Pfam:PF02854 SMART:SM00543 SUPFAM:SSF48371 GO:GO:0003677
GO:GO:0003723 GO:GO:0016070 EMBL:CM001234 Gene3D:1.25.40.180
InterPro:IPR003891 Pfam:PF02847 SMART:SM00544 PROSITE:PS51366
RefSeq:XP_003716342.1 EnsemblFungi:MGG_13527T0 GeneID:5051675
KEGG:mgr:MGG_13527 Uniprot:G4N7G4
Length = 834
Score = 137 (53.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 309 NLRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQR 368
++RR+I+ +MS++DFE+A LLK++L ++ E+ +LL+CC E Y YY L+ ++
Sbjct: 610 DIRRSIFFAVMSALDFEDAYRNLLKLRLNKERQREVSHVLLQCCGSEEQYNPYYALVARK 669
Query: 369 FCMINKVHQENFE 381
++ + NF+
Sbjct: 670 ISGDDRRTKWNFQ 682
Score = 48 (22.0 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 21 LRKSINGLVNKVNATNIKNIIPELFAENLIR 51
+R+ GLVN++ N+ +I+ E+ E L R
Sbjct: 296 IRRQTQGLVNRLTDANLISILGEI--EKLYR 324
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 395 ETNKLRNVAKFFAHLLGTHALPWHVL 420
E ++ N+ KF+ +L+ L VL
Sbjct: 713 ELRRIVNIGKFYGNLISEGVLNLDVL 738
>WB|WBGene00013129 [details] [associations]
symbol:Y52B11A.10 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IMP] InterPro:IPR003890 InterPro:IPR016021
InterPro:IPR016024 Pfam:PF02854 SMART:SM00543 GO:GO:0040007
SUPFAM:SSF48371 GO:GO:0002119 GO:GO:0003677 GO:GO:0040018
GO:GO:0003723 GO:GO:0016070 Gene3D:1.25.40.180 InterPro:IPR003891
Pfam:PF02847 SMART:SM00544 PROSITE:PS51366 eggNOG:NOG300777
GeneTree:ENSGT00550000075087 OMA:WIMESGY EMBL:AL032654
RefSeq:NP_492861.1 ProteinModelPortal:Q9U255 PaxDb:Q9U255
EnsemblMetazoa:Y52B11A.10 GeneID:173006 KEGG:cel:CELE_Y52B11A.10
UCSC:Y52B11A.10 CTD:173006 WormBase:Y52B11A.10 InParanoid:Q9U255
NextBio:877889 Uniprot:Q9U255
Length = 819
Score = 135 (52.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 45/163 (27%), Positives = 80/163 (49%)
Query: 310 LRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERTYLRYYGLLGQRF 369
+RR I+ ++ S+ D ++A +LLK++L+ +E EL +L+ +E+TY +Y L QRF
Sbjct: 628 VRRHIFCSVASADDEDDAFERLLKLQLKGEKERELVHVLIAMMMKEKTYNAFYATLLQRF 687
Query: 370 CMINKVHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEED 429
C NK + + +L+ + ++A+ HL+ + VL T E
Sbjct: 688 CEFNKRFVITLQFALWDRLRECDQLKPFQRGSLAQLLQHLISNEVMSITVLK----TVEW 743
Query: 430 TTSSSRI--FIKILFQEL--SEHLGIRLLNERLTDPTMQDSFE 468
T S+R+ +K LF L S ++ + E + D + FE
Sbjct: 744 ATRSARLTTILKKLFLGLAKSPESVLKRVFEPVIDQQKRTKFE 786
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.139 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 568 474 0.0010 118 3 11 22 0.49 33
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 43
No. of states in DFA: 605 (64 KB)
Total size of DFA: 258 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.84u 0.10s 38.94t Elapsed: 00:00:02
Total cpu time: 38.85u 0.10s 38.95t Elapsed: 00:00:02
Start: Tue May 21 03:02:50 2013 End: Tue May 21 03:02:52 2013