Query 008379
Match_columns 568
No_of_seqs 258 out of 631
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 00:49:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_C 80 kDa nuclear CAP bind 100.0 1.2E-46 4.2E-51 429.4 32.7 415 20-481 7-468 (771)
2 1hu3_A EIF4GII; heat repeat, t 100.0 3.8E-37 1.3E-41 311.4 19.6 194 15-209 5-244 (260)
3 2vso_E Eukaryotic initiation f 100.0 2.4E-36 8.1E-41 309.3 17.2 193 14-207 29-283 (284)
4 3rk6_A Polyadenylate-binding p 100.0 9.7E-30 3.3E-34 253.0 15.3 185 18-202 16-234 (234)
5 2i2o_A EIF4G-like protein; pro 99.9 3.2E-21 1.1E-25 190.5 14.3 153 56-208 39-210 (224)
6 1uw4_B UPF2, regulator of nons 99.4 4.1E-11 1.4E-15 119.1 20.8 186 22-207 5-221 (248)
7 1ug3_A EIF4GI, eukaryotic prot 96.6 0.0095 3.2E-07 61.7 10.9 169 319-496 22-195 (339)
8 4gmj_A CCR4-NOT transcription 95.2 1.9 6.5E-05 42.0 19.4 180 19-206 5-206 (229)
9 3l6a_A Eukaryotic translation 95.1 0.064 2.2E-06 56.1 9.4 181 319-507 23-213 (364)
10 4b89_A General negative regula 93.8 1.7 5.7E-05 42.8 15.6 180 20-206 33-229 (249)
11 1hu3_A EIF4GII; heat repeat, t 92.5 0.45 1.5E-05 47.2 9.4 100 319-418 22-165 (260)
12 2vso_E Eukaryotic initiation f 89.9 0.86 2.9E-05 45.7 8.6 53 319-371 47-105 (284)
13 3pev_B Nucleoporin GLE1; RECA, 87.3 1.6 5.5E-05 44.2 8.5 193 14-211 37-294 (297)
14 2rg8_A Programmed cell death p 86.2 2.1 7.1E-05 39.5 8.0 102 319-422 21-126 (165)
15 2i2o_A EIF4G-like protein; pro 83.6 0.96 3.3E-05 43.9 4.6 71 342-412 37-116 (224)
16 3rk6_A Polyadenylate-binding p 82.7 2.2 7.6E-05 41.6 6.9 92 321-412 34-141 (234)
17 2nsz_A Programmed cell death p 82.2 2.5 8.5E-05 37.3 6.4 102 320-422 19-125 (129)
18 1h2v_C 80 kDa nuclear CAP bind 80.2 3.9 0.00013 46.8 8.7 76 342-417 47-123 (771)
19 2ion_A PDCD4, programmed cell 78.4 3.8 0.00013 37.2 6.4 103 320-423 21-128 (152)
20 2zu6_B Programmed cell death p 73.9 10 0.00035 38.4 8.9 102 320-423 15-120 (307)
21 3eiq_C Programmed cell death p 70.4 11 0.00038 39.1 8.3 104 319-424 65-172 (358)
22 1x5b_A Signal transducing adap 63.2 27 0.00091 31.9 8.5 92 115-210 35-131 (163)
23 3eiq_C Programmed cell death p 57.0 18 0.00061 37.5 6.8 102 320-422 229-335 (358)
24 2zu6_B Programmed cell death p 54.4 21 0.00071 36.1 6.7 103 320-423 178-285 (307)
25 1juq_A ADP-ribosylation factor 47.8 44 0.0015 30.7 7.3 95 114-210 32-134 (171)
26 1mhq_A ADP-ribosylation factor 45.2 52 0.0018 29.4 7.2 95 114-210 20-122 (148)
27 3g2s_A C-terminal fragment of 36.2 77 0.0026 28.4 6.8 95 114-210 30-132 (149)
28 1dvp_A HRS, hepatocyte growth 32.4 2E+02 0.0067 27.1 9.4 93 115-211 25-122 (220)
29 1w63_A Adapter-related protein 28.1 5.9E+02 0.02 27.4 16.6 134 30-166 376-542 (618)
30 4b89_A General negative regula 27.4 3.5E+02 0.012 26.4 10.1 98 319-418 45-148 (249)
31 3zyq_A Hepatocyte growth facto 26.7 1.7E+02 0.0059 27.8 7.9 93 114-210 27-124 (226)
32 1uw4_B UPF2, regulator of nons 26.2 4.6E+02 0.016 25.4 11.5 102 310-418 8-120 (248)
33 3ldz_A STAM-1, signal transduc 24.3 2.5E+02 0.0087 24.5 8.0 92 114-210 24-120 (140)
34 2kpa_A ARNO(375-400); hydrolas 23.0 15 0.00052 23.4 -0.3 12 357-368 2-13 (26)
35 1elk_A Target of MYB1; superhe 22.7 2.5E+02 0.0084 25.1 7.7 93 115-210 36-136 (157)
36 2vgl_A Adaptor protein complex 22.4 5.5E+02 0.019 27.8 12.1 45 134-179 520-564 (621)
37 4gmj_A CCR4-NOT transcription 22.0 2.6E+02 0.0088 26.9 8.0 72 346-418 45-123 (229)
38 2olv_A Penicillin-binding prot 20.7 31 0.0011 38.7 1.4 15 186-200 276-290 (669)
No 1
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=100.00 E-value=1.2e-46 Score=429.41 Aligned_cols=415 Identities=15% Similarity=0.221 Sum_probs=336.2
Q ss_pred HHHHHHHHHhhcCCh---hhHHHHHHHHHH---hhhhhhhhHHHHHHhhhccCCCChHHHHHHHHHHHhcCCchHHHHHH
Q 008379 20 ALRKSINGLVNKVNA---TNIKNIIPELFA---ENLIRGRGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFTAVGELLL 93 (568)
Q Consensus 20 ~Lkk~I~gllNKLs~---~Ni~~i~~eL~~---~Ni~rgrgll~~si~~~q~~~~~f~~vyAaLva~ln~~~pe~G~lll 93 (568)
.++.+|+++|-|+++ +|++.-+..|+. .|+.+|||.|++++++++...|.++++||+||++||++.|+||++++
T Consensus 7 ~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv 86 (771)
T 1h2v_C 7 ETEDHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFV 86 (771)
T ss_dssp ---CHHHHHHHTTTSSCSSCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHH
Confidence 468899999999999 666655555543 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChhhhhhhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCCcH---------HHHHHHHHHHhHhhc
Q 008379 94 KRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTILLENPTDDSV---------EVAVGFVKECGSILQ 164 (568)
Q Consensus 94 ~rlv~~F~~~~~~~dk~~~~n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~sV---------E~ll~lLr~~G~~Lr 164 (568)
++++.+|+++++++++..|..+++|||+|+|++|+++..+++++..|++.++++++ .+++..|.+||+.|.
T Consensus 87 ~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~ 166 (771)
T 1h2v_C 87 EAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELY 166 (771)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998886554 569999999999999
Q ss_pred cCChhHHHHHHHHHHHHh-hcCC----------------CChhHHHHHHHHHHHHHhccCCCCCCCCCccccc--cccce
Q 008379 165 DLSPKGLHGIFERFRGIL-HEGE----------------IDKRVQFLIEGLFAIRKAKFQGYPAVRPELDLVD--IEDQL 225 (568)
Q Consensus 165 ~~~p~~lk~I~~~l~~il-~e~~----------------is~R~~fmIE~l~~lr~nk~k~~~~i~~~ldlve--~~~~~ 225 (568)
+..|.++++|+++++..+ +.+. .+.|+++|++.|..+|+|+|+. |.++..++..+ ..++.
T Consensus 167 e~~~~~l~~lle~~~~yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~-~~iprp~~~f~~~l~d~~ 245 (771)
T 1h2v_C 167 EKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE-RHILRPYLAFDSILCEAL 245 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC-SCCCCGGGGGTTTCCGGG
T ss_pred hcCHHHHHHHHHHHHHHHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC-cCCCchhhhccccccccc
Confidence 999999999999999866 4332 2579999999999999999985 56655554443 45677
Q ss_pred eeeee-ccCcCCccccCCcccCCcccccchHHHHhhhhcccCCCCCCcCCCCCCCCCCCCchhhhhhhhHHHhhhhhhhh
Q 008379 226 THEIS-LQDEIDPEITLDIFKPDPNFLDNEKRYEDMKKDLLGETSEDEEGSDAGSGDEDDSEEEEEEEDEEQMKIKDETE 304 (568)
Q Consensus 226 th~i~-l~~~~~~e~~l~~f~~D~~~~~~e~~~~~~k~~ilG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~t~ 304 (568)
+|.+. +......+ ++.|. |-.+...+.|..+.++ + ..+.+.+.
T Consensus 246 ~H~lp~~~~p~~~~--------~~~yp-----~p~~~f~if~~~d~~e-~----------------------~~~p~~~~ 289 (771)
T 1h2v_C 246 QHNLPPFTPPPHTE--------DSVYP-----MPRVIFRMFDYTDDPE-G----------------------PVMPGSHS 289 (771)
T ss_dssp CBCCCCCCCCCCCT--------TCCCC-----CCCBCCCCCCGGGCTT-S----------------------SCCCCTTS
T ss_pred cCCCCCCCCCCCcc--------cccCC-----ccceeeeccCCccccc-c----------------------ccCCCcch
Confidence 88765 33221111 22222 2223444555432110 0 01223344
Q ss_pred cchhhhhhhhhhhhhcCC--CHHHHHHHHHcccCCCCcchHHHHHHHHhhccc-------CcchhhHHHHHHHHhhcc-H
Q 008379 305 TNLVNLRRTIYLTIMSSV--DFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE-------RTYLRYYGLLGQRFCMIN-K 374 (568)
Q Consensus 305 ~n~t~~RR~Ifl~IMSS~--d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qE-------ktYn~yY~llaerlC~~~-~ 374 (568)
.+ ..+.|++|+.||++. +..||+|+|+++. .+++.++++|+|+||.+| ++|..||+.|+.+||+.+ +
T Consensus 290 id-r~l~re~ildIi~~~~~nrkecA~~Ll~l~--~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~ 366 (771)
T 1h2v_C 290 VE-RFVIEENLHCIIKSHWKERKTCAAQLVSYP--GKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPG 366 (771)
T ss_dssp HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTT
T ss_pred HH-HHHHHHHHHHHHHHccCCHHHHHHHHhcCC--CCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChH
Confidence 44 678999999999999 7799999999985 557788999999999999 999999999999999999 6
Q ss_pred hhHHHHHHHHHHHhhhhhcCchhhHHHHHHHHHHHHhcC--CcCcccccccccCCcccCchHHHHHHHHHHHHHHHHchH
Q 008379 375 VHQENFEKCFVQQYSMIHRLETNKLRNVAKFFAHLLGTH--ALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIR 452 (568)
Q Consensus 375 ~~~~~f~~~f~~~y~~i~~le~~klrNlakf~ahLl~~~--~l~l~vLk~i~l~e~dttss~riFik~LfqeL~~~lg~~ 452 (568)
.|...|..||...|+++|+++++.+++++.+|+|+|+++ ..+|+.|..+ ++.++++++|+|+|.+|++++.---.
T Consensus 367 ~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFShhLSNF~f~W~W~eW~~~--~e~~~~~p~r~Fik~ll~k~~RLSy~- 443 (771)
T 1h2v_C 367 SLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDC--LSQDPESPKPKFVREVLEKCMRLSYH- 443 (771)
T ss_dssp THHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHHHHHTTTTTCCCGGGGGGG--TTSCTTSHHHHHHHHHHHHHHHTSCH-
T ss_pred hHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhcCCcCccHHHhHHh--hcCCccCcHHHHHHHHHHHHHhhhhH-
Confidence 899999999999999999999999999999999999999 6788888665 56778889999999999999863333
Q ss_pred HHHhhcCCcchhhhhhccCCCCCCCCcee
Q 008379 453 LLNERLTDPTMQDSFESIFPRDNPKNTRF 481 (568)
Q Consensus 453 ~l~~rl~d~~~~~~~~glfp~d~~~~~rf 481 (568)
+|+.+ .+.+.|.+++|.++.-+-+|
T Consensus 444 ---~rIk~-~lP~~~~~llp~~p~p~f~y 468 (771)
T 1h2v_C 444 ---QRILD-IVPPTFSALCPSNPTCIYKY 468 (771)
T ss_dssp ---HHHHT-TSCGGGGGGSCCCCCCCCTT
T ss_pred ---HHHHH-hCcHHHHhhCCCCCCCCcee
Confidence 34444 66667889999754333333
No 2
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=3.8e-37 Score=311.44 Aligned_cols=194 Identities=17% Similarity=0.338 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhhhh---hhhhHHHHHHhhhccCCCChHHHHHHHHHHHhc-CCch---
Q 008379 15 RLTWDALRKSINGLVNKVNATNIKNIIPELFAENLI---RGRGLFCRSCMKSQMASPGFTDVFAALVAVVNT-KFTA--- 87 (568)
Q Consensus 15 r~~w~~Lkk~I~gllNKLs~~Ni~~i~~eL~~~Ni~---rgrgll~~si~~~q~~~~~f~~vyAaLva~ln~-~~pe--- 87 (568)
...|++|+|+|+|+|||||++||..|+.+|+..++. +++|+ ++.|+..++.+|+|+++||.||+.|+. ++|.
T Consensus 5 ~~~~~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~v-i~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~ 83 (260)
T 1hu3_A 5 NIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGV-IDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADK 83 (260)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC----
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccC
Confidence 467999999999999999999999999999877664 45675 677888888999999999999999997 5664
Q ss_pred ------HHHHHHHHHHHHHHHHHHh--------------------------------CChhhhhhhHHHHHHHHhhhhcc
Q 008379 88 ------VGELLLKRIVLQLKRAYKR--------------------------------NDKPQLLAAVKFIAHLVNQQVAH 129 (568)
Q Consensus 88 ------~G~lll~rlv~~F~~~~~~--------------------------------~dk~~~~n~i~fIa~Lyn~~Vv~ 129 (568)
||.+|+++|+.+|++.|.. +.+++|.|+++|||||||++|++
T Consensus 84 ~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~ 163 (260)
T 1hu3_A 84 PGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLT 163 (260)
T ss_dssp -----CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 7899999999999998853 12467899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCCcHHHHHHHHHHHhHhhccC-ChhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhccCC
Q 008379 130 EIIALELLTILLENPTDDSVEVAVGFVKECGSILQDL-SPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKFQG 208 (568)
Q Consensus 130 ~~lildii~~LLe~~te~sVE~ll~lLr~~G~~Lr~~-~p~~lk~I~~~l~~il~e~~is~R~~fmIE~l~~lr~nk~k~ 208 (568)
+.+|++||..||++|+|++||++|.+|++||++|+.+ .+..++.||++++.+++++.+++|++|||++++++|+|+|+.
T Consensus 164 ~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~ls~Rirfmi~~l~dLR~~~W~~ 243 (260)
T 1hu3_A 164 EAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDLRLCNWVS 243 (260)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999985 457999999999999999999999999999999999999985
Q ss_pred C
Q 008379 209 Y 209 (568)
Q Consensus 209 ~ 209 (568)
.
T Consensus 244 ~ 244 (260)
T 1hu3_A 244 R 244 (260)
T ss_dssp -
T ss_pred C
Confidence 4
No 3
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=2.4e-36 Score=309.31 Aligned_cols=193 Identities=19% Similarity=0.360 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHhhh-----hhh---hhHHHHHHhhhccCCCChHHHHHHHHHHHhcCC
Q 008379 14 QRLTWDALRKSINGLVNKVNATNIKNIIPELFAENL-----IRG---RGLFCRSCMKSQMASPGFTDVFAALVAVVNTKF 85 (568)
Q Consensus 14 qr~~w~~Lkk~I~gllNKLs~~Ni~~i~~eL~~~Ni-----~rg---rgll~~si~~~q~~~~~f~~vyAaLva~ln~~~ 85 (568)
|+..|++|+|+|+|+|||||++||..|+.+|+..++ .++ +|+ ++.|+..++.+|+|+++||.||+.|+..+
T Consensus 29 ~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~v-i~~If~kA~~ep~fs~~YA~Lc~~l~~~l 107 (284)
T 2vso_E 29 ELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAV-IEQIFLKACDEPHWSSMYAQLCGKVVKEL 107 (284)
T ss_dssp CCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHH-HHHHHHHHHHCGGGHHHHHHHHHHHHHHS
T ss_pred ccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHH-HHHHHHHHHcCcchHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999999988776 233 564 67888888999999999999999999765
Q ss_pred c-h--------------HHHHHHHHHHHHHHHHHHh------------------------CChhhhhhhHHHHHHHHhhh
Q 008379 86 T-A--------------VGELLLKRIVLQLKRAYKR------------------------NDKPQLLAAVKFIAHLVNQQ 126 (568)
Q Consensus 86 p-e--------------~G~lll~rlv~~F~~~~~~------------------------~dk~~~~n~i~fIa~Lyn~~ 126 (568)
| + |+.+||++|+.+|++.|.. ..+++|.|+++|||||||++
T Consensus 108 ~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~~e~~~~~~~k~r~lg~i~FIgeLyk~~ 187 (284)
T 2vso_E 108 NPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLN 187 (284)
T ss_dssp CTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CCTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhhhHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 3 2 5578999999999997642 23568999999999999999
Q ss_pred hccHHHHHHHHHHHhh----CCCCCcHHHHHHHHHHHhHhhccCC----------hhHHHHHHHHHHHHhhcCCCChhHH
Q 008379 127 VAHEIIALELLTILLE----NPTDDSVEVAVGFVKECGSILQDLS----------PKGLHGIFERFRGILHEGEIDKRVQ 192 (568)
Q Consensus 127 Vv~~~lildii~~LLe----~~te~sVE~ll~lLr~~G~~Lr~~~----------p~~lk~I~~~l~~il~e~~is~R~~ 192 (568)
|+++.+|++||+.||+ .|+|++||++|.+|++||++|++++ +..++.||++++.+++++++++|+|
T Consensus 188 ~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f~~l~~l~~~~~ls~Rir 267 (284)
T 2vso_E 188 LLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNIIQTAKISSRIK 267 (284)
T ss_dssp SSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred CCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 9999999999999997 8999999999999999999999988 4689999999999999999999999
Q ss_pred HHHHHHHHHHHh-ccC
Q 008379 193 FLIEGLFAIRKA-KFQ 207 (568)
Q Consensus 193 fmIE~l~~lr~n-k~k 207 (568)
|||++|+++|+| +|+
T Consensus 268 Fml~dlidLR~n~~W~ 283 (284)
T 2vso_E 268 FKLIDIKELRHDKNWN 283 (284)
T ss_dssp HHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHhcccCCC
Confidence 999999999997 996
No 4
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=99.96 E-value=9.7e-30 Score=253.03 Aligned_cols=185 Identities=21% Similarity=0.294 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHhhcCC--hhhHHHHHHHHHHh---hhhhh--hhHHHHHHhhhccCCCChHHHHHHHHHHHhcCC---c-
Q 008379 18 WDALRKSINGLVNKVN--ATNIKNIIPELFAE---NLIRG--RGLFCRSCMKSQMASPGFTDVFAALVAVVNTKF---T- 86 (568)
Q Consensus 18 w~~Lkk~I~gllNKLs--~~Ni~~i~~eL~~~---Ni~rg--rgll~~si~~~q~~~~~f~~vyAaLva~ln~~~---p- 86 (568)
-+.|.|+|+|+||||| ++||+.++.++... ++..+ -+.+++.|++.++.+|+|+++||.||+.|+..+ |
T Consensus 16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~ 95 (234)
T 3rk6_A 16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQ 95 (234)
T ss_dssp --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCT
T ss_pred hHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCc
Confidence 3579999999999999 99999999988654 44443 356888999999999999999999999998743 4
Q ss_pred --hHHHHHHHHHHHHHHHHH--HhCC---hhhhhhhHHHHHHHHhh--------hhccHHHHHHHHHHHh----hCCCCC
Q 008379 87 --AVGELLLKRIVLQLKRAY--KRND---KPQLLAAVKFIAHLVNQ--------QVAHEIIALELLTILL----ENPTDD 147 (568)
Q Consensus 87 --e~G~lll~rlv~~F~~~~--~~~d---k~~~~n~i~fIa~Lyn~--------~Vv~~~lildii~~LL----e~~te~ 147 (568)
.|+.+|+++|+.+|++.+ .+.| ++++.++++||||||++ +|+++.++++|+..|+ ++|+|+
T Consensus 96 ~~~Fr~lLL~rcQ~eFe~~~~~~~~d~~~k~r~lg~i~FIgELf~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee 175 (234)
T 3rk6_A 96 SGNFRQLLLQRCRTEYEVKDQAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDD 175 (234)
T ss_dssp TCCHHHHHHHHHHHHHTTHHHHTSSCHHHHHHHHHHHHHHHHHHHHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHH
T ss_pred hhHHHHHHHHHHHHHHHhhHHhhhccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHhccCCCChH
Confidence 499999999999999887 3445 57899999999999999 8999999888887555 579999
Q ss_pred cHHHHHHHHHHHhHhhcc----CChhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHH
Q 008379 148 SVEVAVGFVKECGSILQD----LSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIR 202 (568)
Q Consensus 148 sVE~ll~lLr~~G~~Lr~----~~p~~lk~I~~~l~~il~e~~is~R~~fmIE~l~~lr 202 (568)
+||++|.+|++||+.|.+ ..|..++.+|++++.+++++++++|+||||++|+++|
T Consensus 176 ~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~~~ls~Rirfml~dlieLR 234 (234)
T 3rk6_A 176 NLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLDANCSRDVKQMLLKLVELR 234 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999996 6889999999999999999999999999999999987
No 5
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=99.85 E-value=3.2e-21 Score=190.51 Aligned_cols=153 Identities=12% Similarity=0.222 Sum_probs=131.9
Q ss_pred HHHHHhhhccCCCChHHHHHHHHHHHhcC------CchHHHHHHHHHHHHHHHHH--HhCChhhhhhhHHHHHHHHhh--
Q 008379 56 FCRSCMKSQMASPGFTDVFAALVAVVNTK------FTAVGELLLKRIVLQLKRAY--KRNDKPQLLAAVKFIAHLVNQ-- 125 (568)
Q Consensus 56 l~~si~~~q~~~~~f~~vyAaLva~ln~~------~pe~G~lll~rlv~~F~~~~--~~~dk~~~~n~i~fIa~Lyn~-- 125 (568)
+++.|+..++..|+|+.+||.||..|... .+.|-.+|+++|+..|++.- +...++++.++++||||||++
T Consensus 39 vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~k~r~lG~i~FIgELf~~l~ 118 (224)
T 2i2o_A 39 VSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFICNIFDYLK 118 (224)
T ss_dssp HHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHHHHHHhHHHHHHHHHHhHhc
Confidence 34567777778999999999999966432 23488899999999997632 233477899999999999999
Q ss_pred --hh--cc-HHHHHHHHHHHhhC---CCCCcHHHHHHHHHHHhHhhccCChhHHHHHHHHHHH-HhhcCCCChhHHHHHH
Q 008379 126 --QV--AH-EIIALELLTILLEN---PTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFRG-ILHEGEIDKRVQFLIE 196 (568)
Q Consensus 126 --~V--v~-~~lildii~~LLe~---~te~sVE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l~~-il~e~~is~R~~fmIE 196 (568)
++ +. +.+|++|+..||+. |+|++||++|.+|++||+.|....|..++.+|.+++. +++.+.+++|+||||+
T Consensus 119 ~~~~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~~~~~md~~f~~l~~~l~~~~~ls~RiRfml~ 198 (224)
T 2i2o_A 119 VNNMPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMNVQLMDELFNLLRDGFLLQEDLSSMGRLLLL 198 (224)
T ss_dssp BTTBCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred ccCcchHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhcCcCCCHHHHHHHH
Confidence 85 44 67899999999975 8899999999999999999999999999999999999 6888899999999999
Q ss_pred HHHHHHHhccCC
Q 008379 197 GLFAIRKAKFQG 208 (568)
Q Consensus 197 ~l~~lr~nk~k~ 208 (568)
+|+++|+++|+.
T Consensus 199 dlieLR~~~W~~ 210 (224)
T 2i2o_A 199 EILEFRAGGWKL 210 (224)
T ss_dssp HHHHHHHTTSCC
T ss_pred HHHHHHHCCCCC
Confidence 999999999974
No 6
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.36 E-value=4.1e-11 Score=119.13 Aligned_cols=186 Identities=10% Similarity=0.198 Sum_probs=144.6
Q ss_pred HHHHHHHh-hcCChhhHHHHHHHHHHhhhhhh--hhHHHHHHhhhccCCCChHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 008379 22 RKSINGLV-NKVNATNIKNIIPELFAENLIRG--RGLFCRSCMKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRIVL 98 (568)
Q Consensus 22 kk~I~gll-NKLs~~Ni~~i~~eL~~~Ni~rg--rgll~~si~~~q~~~~~f~~vyAaLva~ln~~~pe~G~lll~rlv~ 98 (568)
..-|+-+| -.|+..|+..++..|-..|.... ++.+.+.+.+.....=+-.+..|.|++.|...-|+||-.++..+.+
T Consensus 5 ~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vVD~vlE 84 (248)
T 1uw4_B 5 QEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLE 84 (248)
T ss_dssp HHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhHHHHHH
Confidence 34566666 56788888888888866554322 3556666665544333446788999999999899999999999999
Q ss_pred HHHHHHHhCCh---hhhhhhHHHHHHHHhhhhccHHHHHHHHHHHhh--CC-----CCCc-------HHHHHHHHHHHhH
Q 008379 99 QLKRAYKRNDK---PQLLAAVKFIAHLVNQQVAHEIIALELLTILLE--NP-----TDDS-------VEVAVGFVKECGS 161 (568)
Q Consensus 99 ~F~~~~~~~dk---~~~~n~i~fIa~Lyn~~Vv~~~lildii~~LLe--~~-----te~s-------VE~ll~lLr~~G~ 161 (568)
..+.+.+.|+- .+-.+.++|||||||++|++..+|++++..|+. .+ ++.+ |.++|.+|.+||.
T Consensus 85 ~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~ 164 (248)
T 1uw4_B 85 DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQ 164 (248)
T ss_dssp HHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHH
Confidence 99999999884 467789999999999999999999999999885 22 4556 9999999999999
Q ss_pred hhccC-ChhHHHHHHHHHHHHh----------hcCCCChhHHHHHHHHHHHHHhccC
Q 008379 162 ILQDL-SPKGLHGIFERFRGIL----------HEGEIDKRVQFLIEGLFAIRKAKFQ 207 (568)
Q Consensus 162 ~Lr~~-~p~~lk~I~~~l~~il----------~e~~is~R~~fmIE~l~~lr~nk~k 207 (568)
.+..- ....|+.++..++... .+..++.+++||++++++.=+.+++
T Consensus 165 ~f~~~~~~kkLd~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~~~ 221 (248)
T 1uw4_B 165 YFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK 221 (248)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTCC
T ss_pred HhcchhhHHHHHHHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhcccCc
Confidence 87643 3356677777777653 2446899999999999998554554
No 7
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=96.58 E-value=0.0095 Score=61.71 Aligned_cols=169 Identities=9% Similarity=0.119 Sum_probs=124.4
Q ss_pred hcCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC-cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER-TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk-tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
+++-|..||+.=+-.|+.+ ..-.+++..+|..++.-+ .....=+.|...|+..+-.=...|...|...++.++.+.
T Consensus 22 ~~~~d~~Ea~~ci~el~~p-~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l~Dl~lD 100 (339)
T 1ug3_A 22 LHLNDMKEAVQCVQELASP-SLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELAEDMEID 100 (339)
T ss_dssp HHHCCHHHHHHHHHTTCCG-GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhCCCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhhcC
Confidence 4678999999999998854 467889988888777643 344455555566665444456778888888888888765
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCc-ccccccccCCcccCchHHHHHHHHHHHHHHHHchHHHHhhcCCcchhhhhhccCCC
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPW-HVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPR 473 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l-~vLk~i~l~e~dttss~riFik~LfqeL~~~lg~~~l~~rl~d~~~~~~~~glfp~ 473 (568)
|+.-..+|+|.|.++..|.+|. +++..+- ....-.-...-|+..+|+.++...|.+.+.+-+.+-.+. +..+||.
T Consensus 101 iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~-~~l~~~g~~~~fl~~vl~~l~~~~g~~~l~~~~~~s~l~--l~~f~P~ 177 (339)
T 1ug3_A 101 IPHVWLYLAELVTPILQEGGVPMGELFREIT-KPLRPLGKAASLLLEILGLLCKSMGPKKVGTLWREAGLS--WKEFLPE 177 (339)
T ss_dssp CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHT-TTHHHHTCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTCC--GGGTSCT
T ss_pred ccchHHHHHHHHHHHHHCCCCCHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHcCHHHHHHHHHHcCCC--HHHhCCC
Confidence 5778899999999999999999 6654321 111111235789999999999999999998877665555 6677885
Q ss_pred CCCCCceehhhHHHhcCchhhhH
Q 008379 474 DNPKNTRFAINFFTSIGLGGITE 496 (568)
Q Consensus 474 d~~~~~rfsinfft~IgLg~lt~ 496 (568)
+. || -.||+.=||+-|..
T Consensus 178 ~~----~~-~~~~~~~~L~~l~~ 195 (339)
T 1ug3_A 178 GQ----DI-GAFVAEQKVEYTLG 195 (339)
T ss_dssp TC----CH-HHHHHHTTCGGGC-
T ss_pred ch----hH-HHHHHHCCceeecC
Confidence 33 34 58999999998875
No 8
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=95.19 E-value=1.9 Score=42.01 Aligned_cols=180 Identities=14% Similarity=0.248 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHH---HHhhhhhhhhHHHHHHh-hhccCCCChHHHHHHHHHHHhcCCchHHHHHHH
Q 008379 19 DALRKSINGLVNKVNATNIKNIIPEL---FAENLIRGRGLFCRSCM-KSQMASPGFTDVFAALVAVVNTKFTAVGELLLK 94 (568)
Q Consensus 19 ~~Lkk~I~gllNKLs~~Ni~~i~~eL---~~~Ni~rgrgll~~si~-~~q~~~~~f~~vyAaLva~ln~~~pe~G~lll~ 94 (568)
+.++.+|.-++|.+|++|++.-+.|+ +..+ -..-|++-++ +....+|++-.+|+.|+..++. |.+-..+++
T Consensus 5 e~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~---y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~--~~l~~~vl~ 79 (229)
T 4gmj_A 5 ENIQEKIAFIFNNLSQSNMTQKVEELKETVKEE---FMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKN--PEFNKMVLN 79 (229)
T ss_dssp HHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGG---GHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC--HHHHHHHHH
T ss_pred HHhhhhheeehhcCCHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHhhhhcccccHHHHHHHHHHhCh--HHHHHHHHH
Confidence 35778999999999999999988887 2222 1245665543 3334579999999999998876 566777777
Q ss_pred HHHHHHHHHHHhC-------ChhhhhhhHHHHHHHHhhh---hccHHHHHHHHHHHhhCCCC------CcHHHHHHHHHH
Q 008379 95 RIVLQLKRAYKRN-------DKPQLLAAVKFIAHLVNQQ---VAHEIIALELLTILLENPTD------DSVEVAVGFVKE 158 (568)
Q Consensus 95 rlv~~F~~~~~~~-------dk~~~~n~i~fIa~Lyn~~---Vv~~~lildii~~LLe~~te------~sVE~ll~lLr~ 158 (568)
..........+.. ++....|+-.+||.+.--. +.+- -+++=.+|++.... --|..+|++|..
T Consensus 80 ~T~~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~--~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~ 157 (229)
T 4gmj_A 80 ETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHT--DLDVKSLLLEAYVKGQQELLYVVPFVAKVLES 157 (229)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTT--TCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhc--ccCHHHHHHHHHHCCCceEEEeehhHHHHHHh
Confidence 7766666655432 1234556666777664322 1111 12222233332111 135566777777
Q ss_pred Hh--HhhccCChhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhcc
Q 008379 159 CG--SILQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKF 206 (568)
Q Consensus 159 ~G--~~Lr~~~p~~lk~I~~~l~~il~e~~is~R~~fmIE~l~~lr~nk~ 206 (568)
|- ...+--+| =+..|+.-+..+-+..++..-++|-||.|+.-=+=+.
T Consensus 158 ~~~S~iFkPPNP-W~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~ 206 (229)
T 4gmj_A 158 SIRSVVFRPPNP-WTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDI 206 (229)
T ss_dssp TTTCTTTSTTCH-HHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCG
T ss_pred cccCCcCCCCCh-hHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCCh
Confidence 63 34443333 3447888888888878888889999999987443333
No 9
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=95.09 E-value=0.064 Score=56.13 Aligned_cols=181 Identities=17% Similarity=0.167 Sum_probs=125.2
Q ss_pred hcCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC-cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER-TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk-tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
.++-|..||+.=+-.|+.+...-.+++..+|.+.+.-+ .....-+.|...||..+-.=...|...|...++.+..+.
T Consensus 23 ~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~lle~l~Dl~iD 102 (364)
T 3l6a_A 23 LNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLNVLDQCPKLEVD 102 (364)
T ss_dssp HHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHHH
T ss_pred HhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhChHhccc
Confidence 45689999999999998765456788888888776433 233455556666676444455677788888888877765
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCcccccccccCCcccCchHHHHHHHHHHHHHHHHchHHHHhhcCCcchhhhhhccCCCC
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAYIRLTEEDTTSSSRIFIKILFQELSEHLGIRLLNERLTDPTMQDSFESIFPRD 474 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~i~l~e~dttss~riFik~LfqeL~~~lg~~~l~~rl~d~~~~~~~~glfp~d 474 (568)
|.--..+|.|+|.++..|.+|++.+... + ..+. ....|+ .+|+.+....|-..+.+-+...-+. +..+||-+
T Consensus 103 iP~a~~~la~f~ar~i~~~~l~~~~l~~~-l-~~G~--~~~l~l-~vl~~~~k~~G~~~l~~l~~~sgl~--l~~FlPe~ 175 (364)
T 3l6a_A 103 IPLVKSYLAQFAARAIISELVSISELAQP-L-ESGT--HFPLFL-LCLQQLAKLQDREWLTELFQQSKVN--MQKMLPEI 175 (364)
T ss_dssp CTTHHHHHHHHHHHHHHTTSSCHHHHHHH-H-GGGT--TTTHHH-HHHHHHHHHSCHHHHHHHHHHHTCC--SGGGSCGG
T ss_pred cccHHHHHHHHHHHHHHcCCCCHHHHHHH-h-cccc--hHHHHH-HHHHHHHHhcCHHHHHHHHHHcCCC--HHHhCCcc
Confidence 4678899999999999999999876442 1 2232 234555 4579899999998888776544442 56678854
Q ss_pred CCCCceehhhHHHhcCchhhhH------HHHHHHHhCCh
Q 008379 475 NPKNTRFAINFFTSIGLGGITE------NLREYLKNMPR 507 (568)
Q Consensus 475 ~~~~~rfsinfft~IgLg~lt~------~~R~~l~~~~~ 507 (568)
+ .+...--.+|..=||+.|.. .|.+.|+.-|.
T Consensus 176 ~-~~~~~~~e~~~~~~L~~l~~~~~l~~~L~~~l~~~~~ 213 (364)
T 3l6a_A 176 D-QNKDRMLEILEGKGLSFLFPLLKLEKELLKQIKLDPS 213 (364)
T ss_dssp G-CSHHHHHHHHHHHTCGGGCHHHHHHHHHHHHHHHCCC
T ss_pred c-cchhHHHHHHHhCCCcccCCHHHHHHHHHHHHHcCCC
Confidence 3 23334567899999987654 55666655443
No 10
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=93.85 E-value=1.7 Score=42.81 Aligned_cols=180 Identities=14% Similarity=0.229 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHhhhhh--hhhHHHHHH-hhhccCCCChHHHHHHHHHHHhcCCchHHHHHHHHH
Q 008379 20 ALRKSINGLVNKVNATNIKNIIPELFAENLIR--GRGLFCRSC-MKSQMASPGFTDVFAALVAVVNTKFTAVGELLLKRI 96 (568)
Q Consensus 20 ~Lkk~I~gllNKLs~~Ni~~i~~eL~~~Ni~r--grgll~~si-~~~q~~~~~f~~vyAaLva~ln~~~pe~G~lll~rl 96 (568)
.+..+|.-++|.+|+.|++.-+.|+-. +.. -..-|++-+ ++....+|+|-.+|+.|+..++. |.+-+.+++..
T Consensus 33 ~v~dki~Fi~NNls~~Nl~~k~~el~~--~l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~--~~L~~~vl~~T 108 (249)
T 4b89_A 33 DVVEKVLFVLNNVTLANLNNKVDELKK--SLTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGS--GLLHQFMVNVT 108 (249)
T ss_dssp HHHHHHHHHHHHCCTTTHHHHHHHHHH--HCCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC--HHHHHHHHHHH
T ss_pred HHHhhhhhhhhcCChHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 467789999999999999988888721 111 134667654 33455689999999999999986 34445555555
Q ss_pred HHHHHHHHHh-----CChhhhhhhHHHHHHHHhhh---hccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHh--Hh
Q 008379 97 VLQLKRAYKR-----NDKPQLLAAVKFIAHLVNQQ---VAHEIIALELLTILLENPTDD----SVEVAVGFVKECG--SI 162 (568)
Q Consensus 97 v~~F~~~~~~-----~dk~~~~n~i~fIa~Lyn~~---Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G--~~ 162 (568)
.......... .++....|+-.+||.+.--. +.+- -+++-.+|++..... -|..+|++|..|. ..
T Consensus 109 ~~~i~~LL~~~~i~~~eRs~LKNLG~WLG~iTLarNkPI~~~--~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k~Ski 186 (249)
T 4b89_A 109 LRQLFVLLSTKDEQAIDKKHLKNLASWLGCITLALNKPIKHK--NIAFREMLIEAYKENRLEIVVPFVTKILQRASESKI 186 (249)
T ss_dssp HHHHHHHHTBSCGGGSCHHHHHHHHHHHHHHTGGGTCCCCTT--TBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGTTCSS
T ss_pred HHHHHHHhhhcccChHHHHHHHHHHHHHhHHHHhcCCCchhc--ccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcccCCc
Confidence 4444433322 23445666777777664321 1111 122333333332222 3455566666663 22
Q ss_pred hccCChhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHhcc
Q 008379 163 LQDLSPKGLHGIFERFRGILHEGEIDKRVQFLIEGLFAIRKAKF 206 (568)
Q Consensus 163 Lr~~~p~~lk~I~~~l~~il~e~~is~R~~fmIE~l~~lr~nk~ 206 (568)
.+--+| =+..|+.-+..+-+..++-.-++|-||.|+.-=+=+.
T Consensus 187 FkPPNP-Wt~~IL~lL~Ely~~~~LKlnlkFEIEvL~k~l~l~l 229 (249)
T 4b89_A 187 FKPPNP-WTVGILKLLIELNEKANWKLSLTFEVEVLLKSFNLTT 229 (249)
T ss_dssp SSTTCH-HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCCG
T ss_pred cCCCCc-hHHHHHHHHHHHHhCcchhHhHHHHHHHHHHHcCCCh
Confidence 222233 3456888888888888888889999999987444333
No 11
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=92.45 E-value=0.45 Score=47.15 Aligned_cols=100 Identities=11% Similarity=0.118 Sum_probs=69.1
Q ss_pred hcCCCHHHHHHHHHcccCCCC-cchHHHHHHHHhhcccCcchhhHHHHHHHHhhc-c---------HhhHHH----HHHH
Q 008379 319 MSSVDFEEAGHKLLKIKLEPG-QEMELCIMLLECCSQERTYLRYYGLLGQRFCMI-N---------KVHQEN----FEKC 383 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~-qe~EI~~vli~Cc~qEktYn~yY~llaerlC~~-~---------~~~~~~----f~~~ 383 (568)
+|-..|+.-+..|+.+.+... .-+.|+..|++=+..|.+|.+.||.|...|+.. - ..|... .|.-
T Consensus 22 LT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~~~~~~~~~~Fr~~LL~rcq~e 101 (260)
T 1hu3_A 22 LTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKE 101 (260)
T ss_dssp SSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCcccCCccchHHHHHHHHHHHHH
Confidence 457788888999998887543 236799999999999999999999999999873 1 113333 2333
Q ss_pred HHHHhhhhh-----------------------cC------chhhHHHHHHHHHHHHhcCCcCcc
Q 008379 384 FVQQYSMIH-----------------------RL------ETNKLRNVAKFFAHLLGTHALPWH 418 (568)
Q Consensus 384 f~~~y~~i~-----------------------~l------e~~klrNlakf~ahLl~~~~l~l~ 418 (568)
|...|.... .+ ..++..+..+|+|||+-.+.++-.
T Consensus 102 Fe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l~~~ 165 (260)
T 1hu3_A 102 FEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEA 165 (260)
T ss_dssp HHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHH
T ss_pred HhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCHH
Confidence 444332100 01 124567999999999999877765
No 12
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=89.86 E-value=0.86 Score=45.72 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=44.4
Q ss_pred hcCCCHHHHHHHHHcccCCC-----C-cchHHHHHHHHhhcccCcchhhHHHHHHHHhh
Q 008379 319 MSSVDFEEAGHKLLKIKLEP-----G-QEMELCIMLLECCSQERTYLRYYGLLGQRFCM 371 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~-----~-qe~EI~~vli~Cc~qEktYn~yY~llaerlC~ 371 (568)
++-..|+.-+..|+.+.+.. + .-+.|+..|++=+..|.+|.+.||.|..+|+.
T Consensus 47 LT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~If~kA~~ep~fs~~YA~Lc~~l~~ 105 (284)
T 2vso_E 47 LTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVK 105 (284)
T ss_dssp CCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 46788999999999987642 2 11679999999999999999999999999985
No 13
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=87.30 E-value=1.6 Score=44.24 Aligned_cols=193 Identities=14% Similarity=0.244 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHhhcCChh--hHHHHHHHHHHhhhhhh-------h----hHHHHHHhhh---cc-CCCChHHHHHH
Q 008379 14 QRLTWDALRKSINGLVNKVNAT--NIKNIIPELFAENLIRG-------R----GLFCRSCMKS---QM-ASPGFTDVFAA 76 (568)
Q Consensus 14 qr~~w~~Lkk~I~gllNKLs~~--Ni~~i~~eL~~~Ni~rg-------r----gll~~si~~~---q~-~~~~f~~vyAa 76 (568)
=+..|..+||+|+..+|.||.+ .+..|..+|.+ ++.+ . ..+++.++.. +. ..|...-.+|.
T Consensus 37 lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~--ll~~~~~~~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~ 114 (297)
T 3pev_B 37 VRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQ--LINDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGK 114 (297)
T ss_dssp HHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHH--HHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHhhhccchhccccCCHHHHHHHHHHHHH--HHhCccCCchHHHHHHHHHHHHHHHHHHHHhccCCcccchHHH
Confidence 3567889999999999999854 57777777632 1111 1 2355555532 11 35666677888
Q ss_pred HHHHHhcCCchHHHHHHHHHHHH---------------HHH--HHHhC-C---------hhhhhhhHHHHHHHHhhh---
Q 008379 77 LVAVVNTKFTAVGELLLKRIVLQ---------------LKR--AYKRN-D---------KPQLLAAVKFIAHLVNQQ--- 126 (568)
Q Consensus 77 Lva~ln~~~pe~G~lll~rlv~~---------------F~~--~~~~~-d---------k~~~~n~i~fIa~Lyn~~--- 126 (568)
+++.|-..+|++|..|+.+++.. +++ +|++. | -++..+++++.|.+.-..
T Consensus 115 v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~~~~~dg~~E~~~~y~~Rm~Gi~~lyAAI~~~~~~~ 194 (297)
T 3pev_B 115 LTLYLLVQFPELQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWEDNTSYDERMGGILSLFAIITRLQLPQ 194 (297)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTCCBCTTSCBCCHHHHHHHHHHHHHHHHHHHHSCCCT
T ss_pred HHHHHHHhCccHHHHHHHHHhhcCCcccccCCCcccHHHHHHcCCeeCCCCCcccHHHHHHHHHHHHHHHHHHHhCcCcc
Confidence 88877778999999999887643 111 23332 2 147778888888776432
Q ss_pred --------hccHHHHHHHHHHHhhCCCCC-c---HHHHHHHHHHHhHhhccCChhHHHHHHHHH----HHHhhcCCC--C
Q 008379 127 --------VAHEIIALELLTILLENPTDD-S---VEVAVGFVKECGSILQDLSPKGLHGIFERF----RGILHEGEI--D 188 (568)
Q Consensus 127 --------Vv~~~lildii~~LLe~~te~-s---VE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l----~~il~e~~i--s 188 (568)
-......-..+..++..|... . ..++..+|+.+|..|-..=......++..+ -..+.++.- -
T Consensus 195 ~~~~~~~~p~~~~~~W~wLArilN~~p~~~t~t~~~vL~~~Le~ag~~l~~~Yg~Qf~KlL~~i~~~~~~~l~~~~~~~a 274 (297)
T 3pev_B 195 EFITTTSHPFPIALSWHILARICNTPLNLITNTHFVILGSWWDAAAVQFLQAYGNQASKLLILIGEELTSRMAEKKYVGA 274 (297)
T ss_dssp TTTTTSCCSSCTHHHHHHHHHHHTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTHHHHHTGGGCCHHH
T ss_pred cccccCCCCCCchHHHHHHHHHhCCCHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCccH
Confidence 122244556666677654433 2 237778999999998765444444433333 233443322 2
Q ss_pred hhHHHHHHHHHHHHHhccCCCCC
Q 008379 189 KRVQFLIEGLFAIRKAKFQGYPA 211 (568)
Q Consensus 189 ~R~~fmIE~l~~lr~nk~k~~~~ 211 (568)
.|++-++|.. .+++++..|.
T Consensus 275 ~RL~~l~e~~---~~~~~~~~~~ 294 (297)
T 3pev_B 275 ARLRILLEAW---QNNNMESFPE 294 (297)
T ss_dssp HHHHHHHHHH---HTTCCCCCCC
T ss_pred HHHHHHHHHH---HHhCcccccC
Confidence 3544454443 3334665543
No 14
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=86.24 E-value=2.1 Score=39.54 Aligned_cols=102 Identities=15% Similarity=0.165 Sum_probs=78.4
Q ss_pred hcCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccCc-chhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT-YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEkt-Yn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
.++-|..||+.-+-.|+.+ ..-.+++..+|.....-+. -...-+.|...||. +-.=...|+..|....+.++.+.
T Consensus 21 f~~~D~~Ea~~~l~eL~~p-~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls~~~i~~Gf~~lle~ldDl~iD 98 (165)
T 2rg8_A 21 FEHGDTNEVAEMLRDLNLG-EMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELALD 98 (165)
T ss_dssp HHHCCHHHHHHHHHHHTCS-GGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHhCCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhChhhccc
Confidence 3567999999999888855 4778899998887775542 23366667777776 54556778888888888887765
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCcccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAY 422 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~ 422 (568)
|..-..+|+|+|.++..+.+|++.+..
T Consensus 99 iP~a~~~la~fiarav~d~~l~~~~l~~ 126 (165)
T 2rg8_A 99 TPRAPQLVGQFIARAVGDGILCNTYIDS 126 (165)
T ss_dssp CTTHHHHHHHHHHHHHHTTSSCTTHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 467789999999999999999987654
No 15
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=83.59 E-value=0.96 Score=43.93 Aligned_cols=71 Identities=10% Similarity=0.214 Sum_probs=50.8
Q ss_pred hHHHHHHHHhhcccCcchhhHHHHHHHHhhcc------HhhHHHHHHHHHHHhhhhh---cCchhhHHHHHHHHHHHHhc
Q 008379 342 MELCIMLLECCSQERTYLRYYGLLGQRFCMIN------KVHQENFEKCFVQQYSMIH---RLETNKLRNVAKFFAHLLGT 412 (568)
Q Consensus 342 ~EI~~vli~Cc~qEktYn~yY~llaerlC~~~------~~~~~~f~~~f~~~y~~i~---~le~~klrNlakf~ahLl~~ 412 (568)
.+|+.+|++=+..|.+|.+.||.|..+|+..- ..|+..+-..+.+.|+.-+ .-..++.....+|.|+|+..
T Consensus 37 ~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~~g~~~Fr~~LLn~cQ~eFe~~ee~~~~~k~r~lG~i~FIgELf~~ 116 (224)
T 2i2o_A 37 EKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQTNGSVFRRNLLNRLQQEFKAREETRKRSTQEWVCLVSFICNIFDY 116 (224)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHHChHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 48999999999999999999999999998752 1254444333344443322 22245666788999999987
No 16
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=82.75 E-value=2.2 Score=41.60 Aligned_cols=92 Identities=9% Similarity=0.105 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHcc---cCCCC-cchHHHHHHHHhhcccCcchhhHHHHHHHHhh-c-----cHhhHHHHHHHHHHHhhh
Q 008379 321 SVDFEEAGHKLLKI---KLEPG-QEMELCIMLLECCSQERTYLRYYGLLGQRFCM-I-----NKVHQENFEKCFVQQYSM 390 (568)
Q Consensus 321 S~d~~eA~hKLlkL---~lk~~-qe~EI~~vli~Cc~qEktYn~yY~llaerlC~-~-----~~~~~~~f~~~f~~~y~~ 390 (568)
...|+.-+..|+.+ ++... .-..|+..|++=+..|.+|.+-||.|..+++. + ...|+..+-......|+.
T Consensus 34 p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~l~~~~~~~~Fr~lLL~rcQ~eFe~ 113 (234)
T 3rk6_A 34 PGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHHLTISPQSGNFRQLLLQRCRTEYEV 113 (234)
T ss_dssp GGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHHCCCCCTTCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 45677777777765 44432 22579999999999999999999999999986 2 112444443333333332
Q ss_pred hh---cCc---hhhHHHHHHHHHHHHhc
Q 008379 391 IH---RLE---TNKLRNVAKFFAHLLGT 412 (568)
Q Consensus 391 i~---~le---~~klrNlakf~ahLl~~ 412 (568)
-+ .-+ .++..-..+|+|||+..
T Consensus 114 ~~~~~~~d~~~k~r~lg~i~FIgELf~~ 141 (234)
T 3rk6_A 114 KDQAAKGDEVTRKRFHAFVLFLGELYLN 141 (234)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhccHHHHHHHHHHHHHHHHHHhh
Confidence 21 112 24556678899999976
No 17
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=82.21 E-value=2.5 Score=37.29 Aligned_cols=102 Identities=12% Similarity=0.149 Sum_probs=75.2
Q ss_pred cCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC--cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER--TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 320 SS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk--tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
++-|..||+.=+-.|+.+ ..-.|++..+|..+..-+ .-..--+-|...|+..+-.-...|...|...++.++.+.
T Consensus 19 ~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~~l~Dl~lD 97 (129)
T 2nsz_A 19 LSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLD 97 (129)
T ss_dssp HHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHhhChHhhcC
Confidence 567999999988888865 566788888777666533 223445555566665444456678888888888887775
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCcccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAY 422 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~ 422 (568)
|+.-..+|+|+++.+..|.||.+.+..
T Consensus 98 iP~a~~~l~~~v~~ai~~g~l~~~~~~~ 125 (129)
T 2nsz_A 98 VPHSYSVLERFVEECFQAGIISKQLRDL 125 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred ccchHHHHHHHHHHHHHCCCCCHHHHhh
Confidence 567889999999999999999876543
No 18
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=80.21 E-value=3.9 Score=46.76 Aligned_cols=76 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcccCcchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhh-hhcCchhhHHHHHHHHHHHHhcCCcCc
Q 008379 342 MELCIMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSM-IHRLETNKLRNVAKFFAHLLGTHALPW 417 (568)
Q Consensus 342 ~EI~~vli~Cc~qEktYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~-i~~le~~klrNlakf~ahLl~~~~l~l 417 (568)
.-+++.+++|..+-..+-|+||-|..-+...+..+-..+-..++.++.. +++-+-+..+.+.+|+|||+..+.++=
T Consensus 47 ~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k~pe~G~~lv~~l~~~f~~~l~~~~~~~~k~~lrFLa~L~n~~Vv~~ 123 (771)
T 1h2v_C 47 SKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAA 123 (771)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTSBCH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHhccCCeecH
Confidence 5799999999999999999999999999988887776666666665543 456677899999999999999988754
No 19
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=78.40 E-value=3.8 Score=37.23 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=76.8
Q ss_pred cCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC--cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER--TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 320 SS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk--tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
++-|..||+.=|-.|+.+ ..-.|++..+|..++.-+ .-..--+.|...|+.-+-.-...|...|...++.++.+.
T Consensus 21 ~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~~ldDl~lD 99 (152)
T 2ion_A 21 LSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLD 99 (152)
T ss_dssp HHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHhChHhccC
Confidence 567999999988888865 566788888777666532 223345555556665444455678888888888888775
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCccccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAYI 423 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~i 423 (568)
|+.-..+|+|++..+..|.||.+.+..+
T Consensus 100 iP~A~~~la~~v~~ai~~g~l~~~~~~~~ 128 (152)
T 2ion_A 100 VPHSYSVLERFVEECFQAGIISKQLRDLC 128 (152)
T ss_dssp STTHHHHHHHHHHHHHHTTCSCHHHHHTC
T ss_pred ccchHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 5678899999999999999999987764
No 20
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=73.88 E-value=10 Score=38.43 Aligned_cols=102 Identities=15% Similarity=0.159 Sum_probs=78.3
Q ss_pred cCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccCc-chhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc---
Q 008379 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT-YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE--- 395 (568)
Q Consensus 320 SS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEkt-Yn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le--- 395 (568)
++-|..||+.=|--|+.+. .-.+++..+|.++..-+. -...-+.|...||. +-.-...|+..|....+.++.+.
T Consensus 15 ~~~d~~Ea~~~l~el~~p~-~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ldDl~lD~ 92 (307)
T 2zu6_B 15 EHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDLPELALDT 92 (307)
T ss_dssp HHCCHHHHHHHHHTTCCGG-GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhCCcc-hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhHhcccc
Confidence 4578999999998888665 778999999888877653 33466667677773 33455677778888888777765
Q ss_pred hhhHHHHHHHHHHHHhcCCcCccccccc
Q 008379 396 TNKLRNVAKFFAHLLGTHALPWHVLAYI 423 (568)
Q Consensus 396 ~~klrNlakf~ahLl~~~~l~l~vLk~i 423 (568)
|..-..+|+|+|..+..|.+|++-+..+
T Consensus 93 P~a~~~la~flaraV~d~~l~~~~l~~~ 120 (307)
T 2zu6_B 93 PRAPQLVGQFIARAVGDGILCNTYIDSY 120 (307)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCTTTTGGG
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4677899999999999999999977543
No 21
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.39 E-value=11 Score=39.07 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=79.4
Q ss_pred hcCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccCc-chhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQERT-YLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEkt-Yn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
.++-|..||+.=|--|+.+. .-.+++..+|.+++.-+. ....-+.|...||. +-.-...|+..|....+.++.+.
T Consensus 65 f~~~d~~Ea~~~l~eL~~p~-~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~ldDl~lD 142 (358)
T 3eiq_C 65 FEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDLPELALD 142 (358)
T ss_dssp HHHCCHHHHHHHHHTTTCCG-GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTHHHHHHH
T ss_pred hcCCCHHHHHHHHHHhCCch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhhhhhccc
Confidence 34689999999999998665 478999999998875442 34466677777774 43455677778877777777665
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCcccccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAYIR 424 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~i~ 424 (568)
+..-..+|+|+|..+..|.||++-|..+.
T Consensus 143 iP~a~~~la~flaRaV~d~~l~~~~l~~~~ 172 (358)
T 3eiq_C 143 TPRAPQLVGQFIARAVGDGILCNTYIDSYK 172 (358)
T ss_dssp CTTHHHHHHHHHHHHHHTTCSCSSTTGGGC
T ss_pred cccHHHHHHHHHHHHHHhCCCCHHHHHHHh
Confidence 45677999999999999999999876553
No 22
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=63.18 E-value=27 Score=31.90 Aligned_cols=92 Identities=14% Similarity=0.231 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhc-cCChhHHHHHHHHHHHHhhcCCCCh
Q 008379 115 AVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQ-DLSPKGLHGIFERFRGILHEGEIDK 189 (568)
Q Consensus 115 ~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr-~~~p~~lk~I~~~l~~il~e~~is~ 189 (568)
.+.-||.++|.+-.....+...|+.-|...+.. .+.++=.++++||..+. +... +.+++.+.+++. .+.+.
T Consensus 35 ~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas---~~Fl~el~~l~~-~~~~~ 110 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS---RDFATEVRAVIK-NKAHP 110 (163)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS---HHHHHHHHHHHH-TTCCH
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh---HHHHHHHHHHHc-cCCCH
Confidence 445677777777777777777776666654433 34455567788898876 3322 344555555554 34566
Q ss_pred hHHHHHHHHHHHHHhccCCCC
Q 008379 190 RVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 190 R~~fmIE~l~~lr~nk~k~~~ 210 (568)
+|+-.|-.++.-....|++.|
T Consensus 111 ~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 111 KVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCc
Confidence 777766666666666665544
No 23
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=57.05 E-value=18 Score=37.46 Aligned_cols=102 Identities=12% Similarity=0.149 Sum_probs=76.1
Q ss_pred cCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC--cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER--TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 320 SS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk--tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
++-|..||+.=|--|+.+ ..-.|++...|.+++.-+ .--.-.+.|...|+.-.-.-...|...|...++.++.+.
T Consensus 229 ~s~D~~EA~~ci~EL~~p-~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl~~ldDl~lD 307 (358)
T 3eiq_C 229 LSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYNEIPDINLD 307 (358)
T ss_dssp HHCCHHHHHHHHHHHCCT-TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHccCC-cchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcc
Confidence 467999999999888875 456799988888776432 233345555566665544455678888888888887775
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCcccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAY 422 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~ 422 (568)
|+.-..+|+|+++++..|.||.+.+..
T Consensus 308 iP~A~~~la~~varai~~g~l~~~f~~~ 335 (358)
T 3eiq_C 308 VPHSYSVLERFVEECFQAGIISKQLRDL 335 (358)
T ss_dssp CTTHHHHHHHHHHHHHHHTSSCHHHHTT
T ss_pred cccHHHHHHHHHHHHHHCCCCCHHHHHh
Confidence 567789999999999999999976544
No 24
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=54.42 E-value=21 Score=36.13 Aligned_cols=103 Identities=12% Similarity=0.144 Sum_probs=76.7
Q ss_pred cCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhcccC--cchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhcCc--
Q 008379 320 SSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQER--TYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHRLE-- 395 (568)
Q Consensus 320 SS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qEk--tYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~le-- 395 (568)
++-|..||+.=|-.|+.+ ..-.|++..+|..+..-+ .--..-+.|...|+...-.-...|...|...++.++.+.
T Consensus 178 ~~~D~~EA~~ci~EL~~p-~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl~~l~Dl~lD 256 (307)
T 2zu6_B 178 LSGDISEAEHCLKELEVP-HFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIYNEIPDINLD 256 (307)
T ss_dssp HHCCHHHHHHHHHHHCCG-GGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCC-cchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhccHhhcc
Confidence 457999999999888875 566788887777666532 123455555566665554555677888888888887775
Q ss_pred -hhhHHHHHHHHHHHHhcCCcCccccccc
Q 008379 396 -TNKLRNVAKFFAHLLGTHALPWHVLAYI 423 (568)
Q Consensus 396 -~~klrNlakf~ahLl~~~~l~l~vLk~i 423 (568)
|+.-..+|+|+++.+..|.||.+.++.+
T Consensus 257 iP~A~~~la~~v~~ai~~g~l~~~~~~~~ 285 (307)
T 2zu6_B 257 VPHSYSVLERFVEECFQAGIISKQLRDLC 285 (307)
T ss_dssp CTTHHHHHHHHHHHHHHHTSSCHHHHHTS
T ss_pred cccHHHHHHHHHHHHHHCCCCCHHHHHhC
Confidence 5678899999999999999999876654
No 25
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=47.83 E-value=44 Score=30.67 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=60.5
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhccCChhHHHHHHHHHHHHhhc----C
Q 008379 114 AAVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILHE----G 185 (568)
Q Consensus 114 n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l~~il~e----~ 185 (568)
..+.-||.++|.+-.....+...|+.-|...+.. .+.++=.++++||..++.. -+=+.+++.|.+++.. .
T Consensus 32 ~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~e--vas~~Fl~eL~kl~~~k~~~~ 109 (171)
T 1juq_A 32 EYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNE--VGKFRFLNELIKVVSPKYLGD 109 (171)
T ss_dssp HHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHH--HTSHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH--HhhHHHHHHHHHHhccccCCC
Confidence 4556778888887777777777777666665443 3455567788899887632 1224455666666543 2
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCC
Q 008379 186 EIDKRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 186 ~is~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
..+.+|+-.|-.++.-....|++.|
T Consensus 110 ~~~~~Vk~kil~li~~W~~~f~~~~ 134 (171)
T 1juq_A 110 RVSEKVKTKVIELLYSWTMALPEEA 134 (171)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 4567777777777776666666544
No 26
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=45.19 E-value=52 Score=29.41 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhccCChhHHHHHHHHHHHHhhc----C
Q 008379 114 AAVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILHE----G 185 (568)
Q Consensus 114 n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l~~il~e----~ 185 (568)
..+.-||.++|.+-....-+...|+.-|...+.. .+.++=.++++||..+... -+=+.+++.|.+++.. .
T Consensus 20 ~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~e--vas~~Fl~eL~kl~~~k~~~~ 97 (148)
T 1mhq_A 20 SAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSE--VAKFRFLNELIKVLSPKYLGS 97 (148)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH--HTSHHHHHHHHHTTCCSTTSC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHH--HhhHHHHHHHHHHHccccCCC
Confidence 4556788888887777777777777666665543 3445556778899877432 1224566667776653 2
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCC
Q 008379 186 EIDKRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 186 ~is~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
..+..|+-.|-.++.-....|++.|
T Consensus 98 ~~~~~Vk~kil~li~~W~~~f~~~p 122 (148)
T 1mhq_A 98 WATGKVKGRVIEILFSWTVWFPEDI 122 (148)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 3466777777666666666665443
No 27
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=36.18 E-value=77 Score=28.38 Aligned_cols=95 Identities=16% Similarity=0.214 Sum_probs=59.2
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhccCChhHHHHHHHHHHHHhhcC----
Q 008379 114 AAVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQDLSPKGLHGIFERFRGILHEG---- 185 (568)
Q Consensus 114 n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l~~il~e~---- 185 (568)
..+.-||.++|.+-....-+...|+.-+..++.. .+.++=.++++||..+... -+-+.+++.|.+++...
T Consensus 30 ~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~e--ias~~Fl~eL~kl~~~k~~~~ 107 (149)
T 3g2s_A 30 ASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDE--VGKFRFLNELIKVVSPKYLGS 107 (149)
T ss_dssp HHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHH--HTSHHHHHHHHHHHCTTTTGG
T ss_pred HHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHH--HhhHHHHHHHHHHHcccccCC
Confidence 4566788888888777777777777666655443 3445556778889887431 12234555566655432
Q ss_pred CCChhHHHHHHHHHHHHHhccCCCC
Q 008379 186 EIDKRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 186 ~is~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
..+..|+-.|-.++.-....|++.|
T Consensus 108 ~~~~~Vk~kil~li~~W~~~f~~~p 132 (149)
T 3g2s_A 108 RTSEKVKNKILELLYSWTVGLPEEV 132 (149)
T ss_dssp GSCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 3566777777777666666665443
No 28
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.44 E-value=2e+02 Score=27.07 Aligned_cols=93 Identities=18% Similarity=0.248 Sum_probs=57.0
Q ss_pred hHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCCc----HHHHHHHHHHHhHhhcc-CChhHHHHHHHHHHHHhhcCCCCh
Q 008379 115 AVKFIAHLVNQQVAHEIIALELLTILLENPTDDS----VEVAVGFVKECGSILQD-LSPKGLHGIFERFRGILHEGEIDK 189 (568)
Q Consensus 115 ~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~s----VE~ll~lLr~~G~~Lr~-~~p~~lk~I~~~l~~il~e~~is~ 189 (568)
.+.=|+.++|.+-....-+...|+.-|...+..- +.++=.++++||..++. ... +.+++.+..++.. ..+.
T Consensus 25 ~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~---~~fl~~l~~l~~~-~~~~ 100 (220)
T 1dvp_A 25 SILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT---KENCEMFSSFLES-TPHE 100 (220)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS---HHHHHHHHHHHHH-CSCH
T ss_pred HHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh---HHHHHHHHHHhcC-CCcH
Confidence 4456788888877777777777776666654432 34445667889987743 222 2344555555543 3356
Q ss_pred hHHHHHHHHHHHHHhccCCCCC
Q 008379 190 RVQFLIEGLFAIRKAKFQGYPA 211 (568)
Q Consensus 190 R~~fmIE~l~~lr~nk~k~~~~ 211 (568)
.++-.+-.++......|++.|.
T Consensus 101 ~Vk~kil~li~~W~~~f~~~~~ 122 (220)
T 1dvp_A 101 NVRQKMLELVQTWAYAFRSSDK 122 (220)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSS
T ss_pred HHHHHHHHHHHHHHHHhccchH
Confidence 6776666666666666765543
No 29
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=28.07 E-value=5.9e+02 Score=27.38 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=68.3
Q ss_pred hcCChhhHHHHHHHHHH--hhhh-hhhhHHHHHHhhhc-cCCCChHHHHHHHHHHHhcCC------------------ch
Q 008379 30 NKVNATNIKNIIPELFA--ENLI-RGRGLFCRSCMKSQ-MASPGFTDVFAALVAVVNTKF------------------TA 87 (568)
Q Consensus 30 NKLs~~Ni~~i~~eL~~--~Ni~-rgrgll~~si~~~q-~~~~~f~~vyAaLva~ln~~~------------------pe 87 (568)
.=.++.|+..++.+|.. ...- .-|..+++.|.... ...|.+..+.-.|+..|...+ |+
T Consensus 376 ~l~~~~nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~ 455 (618)
T 1w63_A 376 ALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE 455 (618)
T ss_dssp HHCCSSSTHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS
T ss_pred HHcccccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh
Confidence 33567888888888842 1110 01223333332221 223555555555555554332 33
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhhHHHHHHHHhhh-----------hccHHHHHHHHHHHhhCCCCCcHHHHHHHH
Q 008379 88 VGELLLKRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQ-----------VAHEIIALELLTILLENPTDDSVEVAVGFV 156 (568)
Q Consensus 88 ~G~lll~rlv~~F~~~~~~~dk~~~~n~i~fIa~Lyn~~-----------Vv~~~lildii~~LLe~~te~sVE~ll~lL 156 (568)
.....+..++.-+.... .........+-+||+....- -+++..+.+++..+++.+ ..+.++-..++
T Consensus 456 l~~~~v~~L~~~l~~~~--~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~l 532 (618)
T 1w63_A 456 MHAYTVQRLYKAILGDY--SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYAL 532 (618)
T ss_dssp THHHHHHHHHHHHHHCC--SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHH
Confidence 33344444443332210 11222334566777754331 145567788888888876 45667777777
Q ss_pred HHHhHhhccC
Q 008379 157 KECGSILQDL 166 (568)
Q Consensus 157 r~~G~~Lr~~ 166 (568)
..+++.....
T Consensus 533 ta~~Kl~~~~ 542 (618)
T 1w63_A 533 TAIMKLSTRF 542 (618)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 7777665543
No 30
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=27.44 E-value=3.5e+02 Score=26.38 Aligned_cols=98 Identities=14% Similarity=0.182 Sum_probs=61.4
Q ss_pred hcCCCHHHHHHHHHcccCCCCcchHHHHH-HHHhhcccCcchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhh-----hh
Q 008379 319 MSSVDFEEAGHKLLKIKLEPGQEMELCIM-LLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSM-----IH 392 (568)
Q Consensus 319 MSS~d~~eA~hKLlkL~lk~~qe~EI~~v-li~Cc~qEktYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~-----i~ 392 (568)
||..+.++.+.-+-.+ +.+..-.=.++- +.+=+..|..|-+-|..+.+++-. ..-|...++.++...... ++
T Consensus 45 ls~~Nl~~k~~el~~~-l~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~-~~L~~~vl~~T~~~i~~LL~~~~i~ 122 (249)
T 4b89_A 45 VTLANLNNKVDELKKS-LTPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGS-GLLHQFMVNVTLRQLFVLLSTKDEQ 122 (249)
T ss_dssp CCTTTHHHHHHHHHHH-CCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHTBSCGG
T ss_pred CChHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhhcccC
Confidence 4455555555554443 444443444544 566899999999999999998874 223444444444333322 33
Q ss_pred cCchhhHHHHHHHHHHHHhcCCcCcc
Q 008379 393 RLETNKLRNVAKFFAHLLGTHALPWH 418 (568)
Q Consensus 393 ~le~~klrNlakf~ahLl~~~~l~l~ 418 (568)
..+-..|.|||.++|.+-...--|+.
T Consensus 123 ~~eRs~LKNLG~WLG~iTLarNkPI~ 148 (249)
T 4b89_A 123 AIDKKHLKNLASWLGCITLALNKPIK 148 (249)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGTCCCC
T ss_pred hHHHHHHHHHHHHHhHHHHhcCCCch
Confidence 44567899999999998766666664
No 31
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.71 E-value=1.7e+02 Score=27.76 Aligned_cols=93 Identities=19% Similarity=0.331 Sum_probs=51.7
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhcc-CChhHHHHHHHHHHHHhhcCCCC
Q 008379 114 AAVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQD-LSPKGLHGIFERFRGILHEGEID 188 (568)
Q Consensus 114 n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr~-~~p~~lk~I~~~l~~il~e~~is 188 (568)
..+.-||.++|.+-....-+...|+.=|...+.. .+.++=.++++||..+.. ... +.+++.|.+++. ...+
T Consensus 27 ~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias---~~fl~~l~~l~~-~~~~ 102 (226)
T 3zyq_A 27 ESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVAN---KQTMEELKDLLK-RQVE 102 (226)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSS---HHHHHHHHHHHH-HCCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhcc---HHHHHHHHHHhc-cCCC
Confidence 3455677777777666777777666666654433 234555677788886543 222 233344444443 2345
Q ss_pred hhHHHHHHHHHHHHHhccCCCC
Q 008379 189 KRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 189 ~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
..|+-.|-.|+.-....|++.|
T Consensus 103 ~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 103 VNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 5566555555555555555433
No 32
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=26.21 E-value=4.6e+02 Score=25.43 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=67.5
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHcccCCCCcchHHHHHHHHhhccc--Ccch--hhHHHHHHHHhhccHhhHHHHHHHHH
Q 008379 310 LRRTIYLTIMSSVDFEEAGHKLLKIKLEPGQEMELCIMLLECCSQE--RTYL--RYYGLLGQRFCMINKVHQENFEKCFV 385 (568)
Q Consensus 310 ~RR~Ifl~IMSS~d~~eA~hKLlkL~lk~~qe~EI~~vli~Cc~qE--ktYn--~yY~llaerlC~~~~~~~~~f~~~f~ 385 (568)
+|+=||.-+ +..+.+-.+..|.||.-+ +.|++..++.|.+.= -.|+ |..|.|...||.+|+.+..... .
T Consensus 8 ir~Li~~~L-~~~~~~~vlk~lrKl~W~---D~e~~~~l~k~l~~~~~~ky~nI~~lA~ll~~L~~~~~~~~i~vV---D 80 (248)
T 1uw4_B 8 VRKLLYKDL-SKVTTEKVLRQMRKLPWQ---DQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQEDVGIHVV---D 80 (248)
T ss_dssp HHHHHHTTC-STTSHHHHHHHHHTSCTT---SHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHTTTCHHHHHHHH---H
T ss_pred HHHHHHHHc-ccccHHHHHHHHHcCCCC---cHHHHHHHHHHhcchhhcccchHHHHHHHHHHHHhhChHHhhhhH---H
Confidence 455555555 456888899999999874 568999999998752 2454 3566677888888876654432 2
Q ss_pred HHhhhh------hcCchhhHH-HHHHHHHHHHhcCCcCcc
Q 008379 386 QQYSMI------HRLETNKLR-NVAKFFAHLLGTHALPWH 418 (568)
Q Consensus 386 ~~y~~i------~~le~~klr-Nlakf~ahLl~~~~l~l~ 418 (568)
..++.| +.+..+|-| -.+||+|+|.-.+-++-+
T Consensus 81 ~vlE~Ir~gLE~n~~~~nQrRia~vkyLgELYny~lv~s~ 120 (248)
T 1uw4_B 81 GVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESA 120 (248)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 233333 233344433 458999999988877665
No 33
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=24.30 E-value=2.5e+02 Score=24.47 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=53.2
Q ss_pred hhHHHHHHHHhhhhccHHHHHHHHHHHhhCCCCC----cHHHHHHHHHHHhHhhcc-CChhHHHHHHHHHHHHhhcCCCC
Q 008379 114 AAVKFIAHLVNQQVAHEIIALELLTILLENPTDD----SVEVAVGFVKECGSILQD-LSPKGLHGIFERFRGILHEGEID 188 (568)
Q Consensus 114 n~i~fIa~Lyn~~Vv~~~lildii~~LLe~~te~----sVE~ll~lLr~~G~~Lr~-~~p~~lk~I~~~l~~il~e~~is 188 (568)
..+.=||.++|.+-....-+...|+.-|...+.. .+.++=.++++||..+.. .+. +.+++.+.+++.. .+
T Consensus 24 ~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas---~~Fl~el~~l~~~--~~ 98 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS---RDFASEVSNVLNK--GH 98 (140)
T ss_dssp HHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS---HHHHHHHHHHHHH--SC
T ss_pred HHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh---HHHHHHHHHHhcc--CC
Confidence 3555677788877777777777776666554332 233445667788988752 222 2333444444432 35
Q ss_pred hhHHHHHHHHHHHHHhccCCCC
Q 008379 189 KRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 189 ~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
.+++-.|-.++.-....|++.|
T Consensus 99 ~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 99 PKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 6677666666665555665443
No 34
>2kpa_A ARNO(375-400); hydrolase; NMR {Synthetic} PDB: 2kpb_A
Probab=23.02 E-value=15 Score=23.37 Aligned_cols=12 Identities=25% Similarity=0.540 Sum_probs=9.4
Q ss_pred cchhhHHHHHHH
Q 008379 357 TYLRYYGLLGQR 368 (568)
Q Consensus 357 tYn~yY~llaer 368 (568)
+++|||-+|+-|
T Consensus 2 s~dPFYdml~~R 13 (26)
T 2kpa_A 2 SVDPFYEMLAAR 13 (26)
T ss_dssp CSHHHHHHHTCT
T ss_pred CcchHHHHHHHH
Confidence 579999888744
No 35
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.70 E-value=2.5e+02 Score=25.06 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhhhccHHHHHHHHHHHhh-CCCCC----cHHHHHHHHHHHhHhhcc-CChhHHHHHHHH-HHHHhh-cCC
Q 008379 115 AVKFIAHLVNQQVAHEIIALELLTILLE-NPTDD----SVEVAVGFVKECGSILQD-LSPKGLHGIFER-FRGILH-EGE 186 (568)
Q Consensus 115 ~i~fIa~Lyn~~Vv~~~lildii~~LLe-~~te~----sVE~ll~lLr~~G~~Lr~-~~p~~lk~I~~~-l~~il~-e~~ 186 (568)
.+.=||.++|.+-.....+...|+.-|. +.+.. .+.++=.++++||..... ... +.+++. +-+++. .+.
T Consensus 36 ~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~---~~fl~e~Lvk~~~~k~~ 112 (157)
T 1elk_A 36 LNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS---QDFVESVLVRTILPKNN 112 (157)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS---HHHHHHHTHHHHSTTTC
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh---HHHHHHHHHHHhccCCC
Confidence 4456777777776666666666666664 23322 345556777889988764 221 334444 333332 223
Q ss_pred CChhHHHHHHHHHHHHHhccCCCC
Q 008379 187 IDKRVQFLIEGLFAIRKAKFQGYP 210 (568)
Q Consensus 187 is~R~~fmIE~l~~lr~nk~k~~~ 210 (568)
.+..|+-.|-.++.-....|++.|
T Consensus 113 ~~~~Vk~kil~li~~W~~~f~~~p 136 (157)
T 1elk_A 113 PPTIVHDKVLNLIQSWADAFRSSP 136 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCc
Confidence 345566555555555555555443
No 36
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=22.42 E-value=5.5e+02 Score=27.80 Aligned_cols=45 Identities=16% Similarity=0.024 Sum_probs=25.4
Q ss_pred HHHHHHHhhCCCCCcHHHHHHHHHHHhHhhccCChhHHHHHHHHHH
Q 008379 134 LELLTILLENPTDDSVEVAVGFVKECGSILQDLSPKGLHGIFERFR 179 (568)
Q Consensus 134 ldii~~LLe~~te~sVE~ll~lLr~~G~~Lr~~~p~~lk~I~~~l~ 179 (568)
.++++.|.+.+.+.+.++=..+|..+.+.... .|.....+...++
T Consensus 520 ~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~-~p~~~~~i~~~l~ 564 (621)
T 2vgl_A 520 LIQFNLLHSKFHLCSVPTRALLLSTYIKFVNL-FPEVKATIQDVLR 564 (621)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHH
Confidence 35666666666667777777777776665432 3543333333333
No 37
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=22.03 E-value=2.6e+02 Score=26.94 Aligned_cols=72 Identities=8% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHhhcccCcchhhHHHHHHHHhhccHhhHHHHHHHHHHHhhhhhc-------CchhhHHHHHHHHHHHHhcCCcCcc
Q 008379 346 IMLLECCSQERTYLRYYGLLGQRFCMINKVHQENFEKCFVQQYSMIHR-------LETNKLRNVAKFFAHLLGTHALPWH 418 (568)
Q Consensus 346 ~vli~Cc~qEktYn~yY~llaerlC~~~~~~~~~f~~~f~~~y~~i~~-------le~~klrNlakf~ahLl~~~~l~l~ 418 (568)
+++.+=++.|..|..-|..+...+-. ..-|...+..++......+.. -+-..|.|+|.++|.|-.....|+.
T Consensus 45 YLV~~Ras~EpN~h~lY~~fl~~l~~-~~l~~~vl~~T~~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~ 123 (229)
T 4gmj_A 45 YLVMKRVSIEPNFHSLYSNFLDTLKN-PEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPIL 123 (229)
T ss_dssp HHHHHTTTTCGGGHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCC
T ss_pred HHHHhhhhcccccHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCch
Confidence 56777888999999999999888743 344555544444444333321 1234699999999999877777764
No 38
>2olv_A Penicillin-binding protein 2; transpeptidase fold, glycosyltransferase family 51, lysozyme transferase; HET: M0E; 2.80A {Staphylococcus aureus} SCOP: d.2.1.10 e.3.1.1 PDB: 2olu_A* 3dwk_A*
Probab=20.68 E-value=31 Score=38.66 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=11.7
Q ss_pred CCChhHHHHHHHHHH
Q 008379 186 EIDKRVQFLIEGLFA 200 (568)
Q Consensus 186 ~is~R~~fmIE~l~~ 200 (568)
.++.++|..+|..++
T Consensus 276 TiD~~lQ~~ae~al~ 290 (669)
T 2olv_A 276 NMDKDVQKTLQNDVD 290 (669)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHH
Confidence 478888888888764
Done!