Query 008380
Match_columns 567
No_of_seqs 94 out of 104
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 00:50:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wj7_A Hypothetical protein (R 99.0 2.2E-10 7.7E-15 100.9 4.6 55 21-75 36-94 (104)
2 1z96_A DNA-damage, UBA-domain 97.6 8.2E-05 2.8E-09 53.4 4.6 39 22-61 2-40 (40)
3 1wgl_A TOLL-interacting protei 97.4 0.00017 5.7E-09 57.6 4.6 44 20-63 5-49 (59)
4 2cp9_A EF-TS, EF-TSMT, elongat 97.3 0.00021 7.1E-09 58.2 5.1 41 17-60 5-45 (64)
5 1vg5_A RSGI RUH-014, rhomboid 97.3 0.00024 8.1E-09 59.0 5.0 44 19-63 24-67 (73)
6 1ify_A HHR23A, UV excision rep 97.3 0.00019 6.4E-09 54.9 4.0 41 22-63 6-46 (49)
7 2dhy_A CUE domain-containing p 97.3 0.00044 1.5E-08 56.6 6.1 42 21-62 15-57 (67)
8 2g3q_A Protein YBL047C; endocy 97.2 0.00033 1.1E-08 51.6 4.8 38 25-63 5-42 (43)
9 1otr_A Protein CUE2; protein-p 97.2 0.0003 1E-08 54.5 4.1 41 23-63 3-44 (49)
10 2knz_A Ubiquilin-4; cytoplasm, 97.0 0.00059 2E-08 52.9 4.5 41 22-63 9-50 (53)
11 2bwb_A Ubiquitin-like protein 96.9 0.001 3.5E-08 50.4 4.5 40 23-63 6-46 (46)
12 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.0019 6.4E-08 49.9 5.9 40 22-62 10-50 (52)
13 2dah_A Ubiquilin-3; UBA domain 96.8 0.001 3.5E-08 52.0 4.4 40 22-62 7-47 (54)
14 1wji_A Tudor domain containing 96.6 0.0018 6E-08 52.1 4.4 39 24-63 9-47 (63)
15 2dak_A Ubiquitin carboxyl-term 96.5 0.0028 9.4E-08 50.5 4.6 39 23-62 8-46 (63)
16 1wr1_B Ubiquitin-like protein 96.4 0.0026 8.9E-08 50.6 4.2 41 22-63 15-56 (58)
17 2di0_A Activating signal coint 96.4 0.005 1.7E-07 51.1 5.8 43 22-64 11-54 (71)
18 2ekk_A UBA domain from E3 ubiq 96.0 0.007 2.4E-07 45.4 4.3 40 21-62 6-45 (47)
19 1wiv_A UBP14, ubiquitin-specif 95.7 0.0093 3.2E-07 49.1 4.3 40 23-63 28-67 (73)
20 1veg_A NEDD8 ultimate buster-1 95.7 0.009 3.1E-07 50.8 4.2 38 24-62 29-66 (83)
21 1vej_A Riken cDNA 4931431F19; 95.7 0.011 3.9E-07 49.1 4.7 41 22-63 27-68 (74)
22 1dv0_A DNA repair protein HHR2 95.5 0.011 3.8E-07 44.8 3.8 40 23-63 3-42 (47)
23 2lva_A Ubiquitin carboxyl-term 94.3 0.003 1E-07 57.4 0.0 47 17-63 11-58 (129)
24 2dkl_A Trinucleotide repeat co 95.1 0.035 1.2E-06 47.1 5.9 37 25-62 22-58 (85)
25 2dna_A Unnamed protein product 95.0 0.025 8.6E-07 46.4 4.8 41 23-63 18-58 (67)
26 2dag_A Ubiquitin carboxyl-term 95.0 0.019 6.5E-07 47.4 4.1 39 23-62 8-47 (74)
27 2dai_A Ubadc1, ubiquitin assoc 95.0 0.02 6.7E-07 48.4 4.2 39 24-63 29-67 (83)
28 1whc_A RSGI RUH-027, UBA/UBX 3 95.0 0.021 7E-07 45.8 4.0 37 25-62 10-47 (64)
29 2qsf_X RAD23, UV excision repa 94.8 0.024 8.4E-07 53.8 4.6 46 17-63 123-168 (171)
30 2cpw_A CBL-interacting protein 94.8 0.028 9.7E-07 45.1 4.4 38 25-63 20-58 (64)
31 1vdl_A Ubiquitin carboxyl-term 94.5 0.039 1.3E-06 46.5 4.5 42 22-63 22-64 (80)
32 2cwb_A Chimera of immunoglobul 94.4 0.036 1.2E-06 49.2 4.6 42 22-63 64-105 (108)
33 1aip_C EF-TS, elongation facto 94.0 0.036 1.2E-06 53.6 4.0 38 24-61 3-40 (196)
34 2lbc_A Ubiquitin carboxyl-term 93.9 0.054 1.8E-06 48.0 4.6 39 24-63 78-116 (126)
35 2qho_B E3 ubiquitin-protein li 93.8 0.072 2.5E-06 41.7 4.5 45 17-64 5-50 (53)
36 2ooa_A E3 ubiquitin-protein li 93.6 0.068 2.3E-06 42.1 4.2 41 21-62 8-48 (52)
37 1xb2_B EF-TS, elongation facto 93.6 0.044 1.5E-06 55.7 4.0 38 24-61 4-41 (291)
38 2dal_A Protein KIAA0794; FAS a 93.4 0.14 4.6E-06 40.8 5.7 47 16-62 7-53 (62)
39 3k9o_A Ubiquitin-conjugating e 93.2 0.084 2.9E-06 50.1 4.9 41 21-62 160-200 (201)
40 1oqy_A HHR23A, UV excision rep 92.1 0.085 2.9E-06 54.9 3.7 41 22-63 166-206 (368)
41 2crn_A Ubash3A protein; compac 92.1 0.068 2.3E-06 43.0 2.4 38 25-63 10-48 (64)
42 2d9s_A CBL E3 ubiquitin protei 91.7 0.23 7.8E-06 39.3 4.8 39 23-62 8-46 (53)
43 3e46_A Ubiquitin-conjugating e 91.6 0.14 4.9E-06 50.8 4.5 41 21-62 212-252 (253)
44 1v92_A NSFL1 cofactor P47; 3-h 91.4 0.21 7.1E-06 36.6 4.1 40 23-62 4-43 (46)
45 1vek_A UBP14, ubiquitin-specif 90.8 0.26 8.8E-06 41.6 4.7 39 23-62 28-67 (84)
46 2juj_A E3 ubiquitin-protein li 90.7 0.27 9.3E-06 39.2 4.3 42 20-62 3-44 (56)
47 3e21_A HFAF1, FAS-associated f 90.6 0.17 5.9E-06 38.4 3.1 40 23-62 4-44 (45)
48 1tr8_A Conserved protein (MTH1 90.5 0.2 6.7E-06 43.9 3.8 36 25-60 66-101 (102)
49 2dam_A ETEA protein; KIAA0887, 90.4 0.48 1.6E-05 38.3 5.7 46 18-63 12-58 (67)
50 1oqy_A HHR23A, UV excision rep 90.2 0.23 7.9E-06 51.7 4.7 44 18-62 319-362 (368)
51 2ejs_A Autocrine motility fact 90.0 0.36 1.2E-05 38.7 4.6 44 20-64 9-53 (58)
52 2ekf_A Ancient ubiquitous prot 89.2 0.49 1.7E-05 38.3 4.8 43 21-64 10-53 (61)
53 4ae4_A Ubiquitin-associated pr 88.2 0.5 1.7E-05 42.1 4.7 38 24-62 76-113 (118)
54 4g3o_A E3 ubiquitin-protein li 88.0 0.38 1.3E-05 38.6 3.4 43 20-63 13-56 (58)
55 1p3q_Q VPS9P, vacuolar protein 87.7 0.19 6.5E-06 39.7 1.5 41 23-63 11-52 (54)
56 2cp8_A NEXT to BRCA1 gene 1 pr 82.6 2 6.8E-05 34.0 5.1 40 23-62 8-47 (54)
57 4ae4_A Ubiquitin-associated pr 82.5 1.4 4.7E-05 39.3 4.7 42 20-62 4-45 (118)
58 2lbc_A Ubiquitin carboxyl-term 82.4 0.96 3.3E-05 39.9 3.7 36 26-62 5-41 (126)
59 2oo9_A E3 ubiquitin-protein li 79.5 1.4 4.6E-05 34.0 3.1 37 25-62 5-41 (46)
60 1wgn_A UBAP1, ubiquitin associ 79.2 1.6 5.3E-05 35.6 3.5 44 18-62 13-56 (63)
61 3avx_A Elongation factor TS, e 76.1 0.5 1.7E-05 56.3 -0.3 36 26-61 7-42 (1289)
62 2dzl_A Protein FAM100B; UBA-li 74.1 3.5 0.00012 33.3 4.3 38 26-63 19-56 (66)
63 1ufz_A Hypothetical protein BA 73.9 2.2 7.6E-05 36.4 3.2 40 25-64 35-76 (83)
64 1oai_A Nuclear RNA export fact 72.4 3.7 0.00013 32.5 4.0 45 22-72 5-49 (59)
65 2jz1_A Protein doublesex; sex 57.8 4.8 0.00016 34.1 2.1 40 24-63 9-51 (80)
66 2pwq_A Ubiquitin conjugating e 53.6 2.8 9.4E-05 40.6 0.0 39 24-63 177-215 (216)
67 2l3n_A DNA-binding protein RAP 47.6 53 0.0018 28.1 6.9 39 24-62 14-52 (104)
68 1zv1_A Doublesex protein; UBA 42.9 15 0.00052 30.0 2.7 41 23-63 8-51 (65)
69 1x4c_A Splicing factor, argini 41.5 20 0.00068 29.4 3.4 15 36-50 26-40 (108)
70 2gpi_A Conserved hypothetical 34.3 18 0.00062 31.0 2.1 40 30-69 40-82 (91)
71 1aua_A Phosphatidylinositol tr 29.2 47 0.0016 32.0 4.3 45 18-62 24-75 (296)
72 1nri_A Hypothetical protein HI 27.0 20 0.00068 35.5 1.3 49 20-68 236-288 (306)
73 2jp7_A MRNA export factor MEX6 25.6 61 0.0021 25.5 3.5 38 22-59 4-41 (57)
74 1jkg_B TAP; NTF2-like domain, 25.0 15 0.00052 35.9 0.0 49 22-76 196-244 (250)
75 2xag_B REST corepressor 1; ami 24.7 16 0.00053 39.7 0.0 32 32-63 154-185 (482)
76 3bq3_A Defective in cullin ned 21.0 72 0.0024 31.9 3.9 43 20-62 11-53 (270)
77 3q8g_A CRAL-TRIO domain-contai 20.2 91 0.0031 31.1 4.5 45 18-62 33-84 (320)
78 1tte_A Ubiquitin-conjugating e 20.0 65 0.0022 31.0 3.3 37 25-62 170-211 (215)
No 1
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=98.99 E-value=2.2e-10 Score=100.85 Aligned_cols=55 Identities=29% Similarity=0.383 Sum_probs=49.5
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCC----ccchhhhchhh
Q 008380 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQD----PFHEVKSKRDK 75 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d----~f~eVkkKR~k 75 (567)
.++++++|+.|+|++|++++++..||.+||+|+++||++||++. .|++|+|||.+
T Consensus 36 d~d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~~~~~~W~~~~kKk~~ 94 (104)
T 1wj7_A 36 DADFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGV 94 (104)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCSSSCSSCSSCCCCCCS
T ss_pred cccHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCcCCceeeecccccc
Confidence 46889999999999999999999999999999999999999874 69999765544
No 2
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.55 E-value=8.2e-05 Score=53.39 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=36.0
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHh
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl 61 (567)
++.+++|++|+++ |.+++++..||+.|++|++.|++.|+
T Consensus 2 ~~~~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 2 PGLNSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp -CHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred chHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 5678899999998 99999999999999999999999885
No 3
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=97.36 E-value=0.00017 Score=57.60 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=41.8
Q ss_pred CCcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.|.-+++.|++|+|+| +.+.+-|-.+|+.|++|++.||+.||+.
T Consensus 5 ~~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 5 SSGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp SSSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 6778899999999999 9999999999999999999999999974
No 4
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=97.35 E-value=0.00021 Score=58.19 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=36.8
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHH
Q 008380 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (567)
Q Consensus 17 ~~~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rL 60 (567)
...|++ +.|+.|+|.||.+..||..||.+||+|+.+||..|
T Consensus 5 ~~~it~---~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~L 45 (64)
T 2cp9_A 5 SSGSSK---ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWL 45 (64)
T ss_dssp SSCCCC---HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHH
T ss_pred cccCCH---HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 445664 67999999999999999999999999999999977
No 5
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=97.30 E-value=0.00024 Score=59.00 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=40.3
Q ss_pred cCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 19 SIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 19 ~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
...+.++++|++|+++ |++++++..||+.|++|++.|+++||.+
T Consensus 24 ~~~~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 24 GRVAASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp CCSCCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred cCCcccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3567789999999997 8999999999999999999999999974
No 6
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=97.30 E-value=0.00019 Score=54.89 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=37.8
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+..+++|++|+++ |++++++..||+.|++|++.|++.|+++
T Consensus 6 ~~~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 6 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred ccCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4578899999998 9999999999999999999999999975
No 7
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.26 E-value=0.00044 Score=56.61 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=40.0
Q ss_pred CcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 21 PAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
-..++..|++||++| +...+.|-.+|+.|++|++.||+.||.
T Consensus 15 ~~~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 15 RLEFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp CCCSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 368999999999999 999999999999999999999999996
No 8
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.25 E-value=0.00033 Score=51.63 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=35.1
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+++|++|+++ |.+++++..||+.|++|++.|++.|++.
T Consensus 5 e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 5 SLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHcC
Confidence 6789999996 9999999999999999999999999874
No 9
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=97.18 E-value=0.0003 Score=54.51 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=38.6
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+.+..|+.|.|+| .++.++|-.+|+.|+||.++||+.||..
T Consensus 3 ~~e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 3 DHESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SHHHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5678999999999 9999999999999999999999999974
No 10
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=97.03 E-value=0.00059 Score=52.88 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=37.0
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~-seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++++|++|+++ |. .++.+..||+.|++|++.||++|++.
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4578899999997 78 88899999999999999999999974
No 11
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.87 E-value=0.001 Score=50.42 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=34.3
Q ss_pred chHHHHHhhhhccCCC-hHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~s-eeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.++.+|++|+++ |.+ ++.+..||+.|++|++.||++|+++
T Consensus 6 ~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~~ 46 (46)
T 2bwb_A 6 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 46 (46)
T ss_dssp HTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 467899999997 765 4558999999999999999999863
No 12
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.85 E-value=0.0019 Score=49.95 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=36.4
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~-seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
..++++|++|+++ |. .++.+..||+.|++|++.||++|+.
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~ 50 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG 50 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4577999999997 88 8888999999999999999999987
No 13
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.84 E-value=0.001 Score=52.01 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=36.1
Q ss_pred cchHHHHHhhhhccCCChHH-HHHHHHhcCCCHHHHHHHHhc
Q 008380 22 AGSRKIVQSLKEIVNCPESE-IYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seee-i~~aL~dCn~DpneAv~rLl~ 62 (567)
..++++|++|+++ |.++++ +..||+.|++|++.||++|+.
T Consensus 7 ~~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 7 GHFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp CSSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4678999999998 998876 699999999999999999995
No 14
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.62 E-value=0.0018 Score=52.11 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=35.4
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
-+++|++|+++ |.+++++..||+.|++|++.|++.|+..
T Consensus 9 ~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 9 DEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp CHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 36789999985 9999999999999999999999999973
No 15
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.48 E-value=0.0028 Score=50.51 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=35.8
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
-.+++|++|.++ |.+++.+..||+.|++|++.|++.|++
T Consensus 8 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~ 46 (63)
T 2dak_A 8 PPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFS 46 (63)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 357789999996 999999999999999999999999997
No 16
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.44 E-value=0.0026 Score=50.57 Aligned_cols=41 Identities=15% Similarity=0.141 Sum_probs=35.1
Q ss_pred cchHHHHHhhhhccCCC-hHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNCP-ESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~s-eeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++++|++|+++ |.+ ++.+..||+.|++|++.||++|++.
T Consensus 15 ~~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 15 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 3467899999997 765 6677999999999999999999974
No 17
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=96.40 E-value=0.005 Score=51.13 Aligned_cols=43 Identities=21% Similarity=0.419 Sum_probs=41.1
Q ss_pred cchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008380 22 AGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~d 64 (567)
+..+..|.+||++| +..+.=|.+.|+.+|.|++.+|+.||+.+
T Consensus 11 ~~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~~ 54 (71)
T 2di0_A 11 VELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEER 54 (71)
T ss_dssp HHHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHccC
Confidence 68899999999999 99999999999999999999999999965
No 18
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.98 E-value=0.007 Score=45.41 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=35.4
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
|.-.+++|++|.++ |.+++.+..||+.|+ |++.|++.|++
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 34467889999985 999999999999997 99999999986
No 19
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.70 E-value=0.0093 Score=49.11 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=36.1
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
-.+++|++|+++ |.+++.+..||+.|++|++.|++.|++.
T Consensus 28 ~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 28 IDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp SCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 347789999886 8999999999999999999999999973
No 20
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.68 E-value=0.009 Score=50.80 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=36.0
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
.+++|++|+++ |++++.+..||+.|++|++.|++.|+.
T Consensus 29 ~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~s 66 (83)
T 1veg_A 29 SQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAH 66 (83)
T ss_dssp CHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 57899999997 999999999999999999999999997
No 21
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.65 E-value=0.011 Score=49.12 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=36.0
Q ss_pred cchHHHHHhhhhccCC-ChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNC-PESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~-seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++++|++|+++ |. .++.+..||+.|++|++.||++|+..
T Consensus 27 ~~ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 27 GRYQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp TTSHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 4578899999998 76 56778999999999999999999975
No 22
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=95.53 E-value=0.011 Score=44.85 Aligned_cols=40 Identities=33% Similarity=0.459 Sum_probs=35.9
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.-++.|++|+++ |.++..+..||.-|+.|++.|++.|++.
T Consensus 3 ~e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 3 QEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp CCHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 346788898877 9999999999999999999999999974
No 23
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=94.28 E-value=0.003 Score=57.42 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=40.8
Q ss_pred cccCCcchHHHHHhhhhccCCChH-HHHHHHHhcCCCHHHHHHHHhcC
Q 008380 17 ISSIPAGSRKIVQSLKEIVNCPES-EIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 17 ~~~ip~~~rk~Vq~lkEi~~~see-ei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+...|...+..+.+||||||..|. .+..||+.|+||+.+||.+|.++
T Consensus 11 ~~~~~~~~Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 11 RENLYFQGQMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 444777889999999999999965 56789999999999999999884
No 24
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.07 E-value=0.035 Score=47.08 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=34.9
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+++|++|.++ |.+++.+..||+.|++|++.|++.|++
T Consensus 22 ~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 7889999886 999999999999999999999999997
No 25
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.04 E-value=0.025 Score=46.38 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=33.6
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.++..|++|+++==+.++.+..||+.|++|++.||++|++.
T Consensus 18 ~y~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 18 RFSKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HTHHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 46778888888533555667999999999999999999974
No 26
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.019 Score=47.36 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=35.5
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCC-CHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~-DpneAv~rLl~ 62 (567)
--+.+|++|.++ |++++.+..||+.|++ |++.|++.|++
T Consensus 8 ~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 8 LDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp SCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 457889999995 9999999999999996 99999999997
No 27
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.01 E-value=0.02 Score=48.40 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=35.7
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.+.+|++|.++ |++++.+..||+-|++|++.|++.|++.
T Consensus 29 ~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 29 DEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp CHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 56788999985 9999999999999999999999999973
No 28
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.98 E-value=0.021 Score=45.85 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=33.6
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhc-CCCHHHHHHHHhc
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKEC-NMDPNEAVNRLLS 62 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dC-n~DpneAv~rLl~ 62 (567)
+.+|++|.++ |++++.+..||+.| |++++.|++.||+
T Consensus 10 ~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 10 LTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4578888885 99999999999999 7999999999997
No 29
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=94.78 E-value=0.024 Score=53.75 Aligned_cols=46 Identities=15% Similarity=0.246 Sum_probs=41.9
Q ss_pred cccCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 17 ISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 17 ~~~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
...+.+.-++.|+.|+++ |++++.++.+|..|+.|.+.|+++||+.
T Consensus 123 ~i~~tpee~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~~ 168 (171)
T 2qsf_X 123 QVDYTPEDDQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFSD 168 (171)
T ss_dssp CCCCCHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred cCCCCccHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 456778889999999988 8999999999999999999999999984
No 30
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.78 E-value=0.028 Score=45.09 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=34.3
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCC-CHHHHHHHHhcC
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLSQ 63 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~-DpneAv~rLl~~ 63 (567)
+.+|++|.++ |.+++.+..||+-|++ |++.|++.|++.
T Consensus 20 e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 20 GSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp CCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4678888885 9999999999999998 999999999974
No 31
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.47 E-value=0.039 Score=46.49 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=37.6
Q ss_pred cchHHHHHhhhhccCCChHHHH-HHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNCPESEIY-AMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~-~aL~dCn~DpneAv~rLl~~ 63 (567)
...+..+.+||||||..|..++ .||+..++|+.+||-+|.++
T Consensus 22 ~~~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 22 KHQQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp SCHHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 3677899999999999998865 79999999999999999984
No 32
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=94.44 E-value=0.036 Score=49.16 Aligned_cols=42 Identities=12% Similarity=0.103 Sum_probs=35.4
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++++|++|+|+==..++.+..||..|++|++.||++|++.
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 356889999999633455799999999999999999999974
No 33
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=94.02 E-value=0.036 Score=53.65 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=35.0
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHh
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl 61 (567)
.-+.|+.|+|.||..--||..||.+|++|.+.|++.|-
T Consensus 3 ~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR 40 (196)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLR 40 (196)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34789999999999999999999999999999999774
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=93.87 E-value=0.054 Score=47.97 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=35.6
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.+++|++|.++ |.+.+.+..||+.|++|++.|++.|+..
T Consensus 78 ~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~~ 116 (126)
T 2lbc_A 78 PEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFSH 116 (126)
T ss_dssp CHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 57789999885 9999999999999999999999999974
No 35
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=93.81 E-value=0.072 Score=41.69 Aligned_cols=45 Identities=36% Similarity=0.478 Sum_probs=35.7
Q ss_pred cccCCcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008380 17 ISSIPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (567)
Q Consensus 17 ~~~ip~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~d 64 (567)
+..||. +.|.+..-++ |++.+-|+.-|+..|.|+|+||+-||+.|
T Consensus 5 ~~~vPe---~li~q~q~VLqgksR~vIirELqrTnLdVN~AvNNlLsRD 50 (53)
T 2qho_B 5 ASVIPE---ELISQAQVVLQGKSRSVIIRELQRTNLDVNLAVNNLLSRD 50 (53)
T ss_dssp GGGSCH---HHHHHHHHHSTTCCHHHHHHHHHHTTTCHHHHHHHHHC--
T ss_pred cccCcH---HHHHHHHHHhcCCcHHHHHHHHHHhCccHHHHHHHHhccc
Confidence 344564 5566655567 99999999999999999999999999865
No 36
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=93.65 E-value=0.068 Score=42.08 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=34.0
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+......|++|+++ |.+.+++..||+-|++|++.|.++||+
T Consensus 8 ~~~~~~~Ia~Lm~m-GFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 8 LENVDAKIAKLMGE-GYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp ---CHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45556778877764 999999999999999999999999997
No 37
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=93.62 E-value=0.044 Score=55.65 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=35.2
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHh
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl 61 (567)
..+.|+.|+|.||..--||..||.+||+|.+.|++.|-
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 41 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLH 41 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45789999999999999999999999999999999774
No 38
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.43 E-value=0.14 Score=40.77 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=42.5
Q ss_pred CcccCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 16 GISSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 16 ~~~~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+...++..-+++|++.++|++++++.....|..|+.|++.||....+
T Consensus 7 ~~~~~s~~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 7 GGSAASSALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp CCCSSCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred chhhcCccHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 35667888899999999999999999999999999999999987765
No 39
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=93.17 E-value=0.084 Score=50.13 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=37.7
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
.+.++++|++|+++ |..++.+..||..|+.|++.|+++||+
T Consensus 160 ~~~~eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 160 SPEYTKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp CHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 35789999999887 999999999999999999999999986
No 40
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=92.14 E-value=0.085 Score=54.95 Aligned_cols=41 Identities=17% Similarity=0.323 Sum_probs=37.9
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++++|++|+++ |++++.|..||+-|++|+++|++.|+++
T Consensus 166 ~~~~~~i~~l~~M-Gf~~~~~~~AL~a~~nn~~~A~e~L~~g 206 (368)
T 1oqy_A 166 SEYETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLTG 206 (368)
T ss_dssp TTHHHHHHHHHTT-TCCSHHHHHHHHHSCSSTTHHHHTTTTS
T ss_pred cchHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4688999999876 8999999999999999999999999985
No 41
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.14 E-value=0.068 Score=42.99 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=33.3
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCC-CHHHHHHHHhcC
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNM-DPNEAVNRLLSQ 63 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~-DpneAv~rLl~~ 63 (567)
+.+|++|.+ .|.+.+.+..||+-|++ +++.|++.|++.
T Consensus 10 e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 10 PSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 447888888 49999999999999976 999999999963
No 42
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.72 E-value=0.23 Score=39.26 Aligned_cols=39 Identities=15% Similarity=0.028 Sum_probs=32.7
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
.++..|++|+++ |.+.+++..||.-|++|++.|.++|++
T Consensus 8 ~~e~~I~~L~~l-GF~r~~ai~AL~~a~nnve~Aa~iL~e 46 (53)
T 2d9s_A 8 QLSSEIERLMSQ-GYSYQDIQKALVIAHNNIEMAKNILRE 46 (53)
T ss_dssp CSHHHHHHHHHH-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHc-CCCHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344556666553 999999999999999999999999996
No 43
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=91.60 E-value=0.14 Score=50.76 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=38.0
Q ss_pred CcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 21 PAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
.+.++++|+.|+|+ |..++.+..||..||.|.+.|+++||+
T Consensus 212 ~~~~~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 212 SPEYTKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp CHHHHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 45789999999887 999999999999999999999999986
No 44
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=91.38 E-value=0.21 Score=36.65 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=36.1
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+-+.+|++..+|||++++.....|..|+.|++.||....+
T Consensus 4 ~~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 4 ERQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 4567899999999999999999999999999999987654
No 45
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=90.84 E-value=0.26 Score=41.57 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=35.0
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhc-CCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKEC-NMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dC-n~DpneAv~rLl~ 62 (567)
-.+.+|++|.++ |.+++.+..||+-| |+|++.|++.|++
T Consensus 28 ~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 28 ANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp CCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 358899999985 99999999999988 4899999999997
No 46
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=90.69 E-value=0.27 Score=39.16 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=36.3
Q ss_pred CCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 20 IPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
.++-.+..|..|+++ |.+.+++..||.-|+.|++.|.++||+
T Consensus 3 ~~~p~e~~Ia~L~sm-Gfsr~da~~AL~ia~Ndv~~AtNiLlE 44 (56)
T 2juj_A 3 ASPQLSSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 44 (56)
T ss_dssp CCHHHHHHHHHHHTT-TCCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHc-CCCHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345667778877664 999999999999999999999999997
No 47
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=90.60 E-value=0.17 Score=38.45 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=35.0
Q ss_pred chHHHHHhhhhccCCCh-HHHHHHHHhcCCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPE-SEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~se-eei~~aL~dCn~DpneAv~rLl~ 62 (567)
+-.++|.+..+|||.++ +++...|..||.|+..||+..+.
T Consensus 4 d~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 4 DREMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp CHHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred cHHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 55789999999999998 99999999999999999986543
No 48
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=90.52 E-value=0.2 Score=43.92 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHH
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRL 60 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rL 60 (567)
.+.|..|++-+|+|.++-..||++|++|+-+||-.|
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 477889999999999999999999999999998766
No 49
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.40 E-value=0.48 Score=38.32 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=41.4
Q ss_pred ccCCcchHHHHHhhhhccC-CChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 18 SSIPAGSRKIVQSLKEIVN-CPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 18 ~~ip~~~rk~Vq~lkEi~~-~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..+..+-+++|++.++||| .+++...+.|..|+.|++.||...++.
T Consensus 12 ~~Ls~~~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~ 58 (67)
T 2dam_A 12 RDLTQEQTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNE 58 (67)
T ss_dssp CCCCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHS
T ss_pred hhcChhHHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4677888999999999999 888999999999999999999977753
No 50
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=90.21 E-value=0.23 Score=51.73 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=39.7
Q ss_pred ccCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 18 ~~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
..+-+.-++.|+.|+++ |.+++.+..||..|+.|.+.|++.|++
T Consensus 319 i~~t~ee~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 319 IQVTPQEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp CCCCTTTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred ccCCCcCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 35667788999999887 999999999999999999999999997
No 51
>2ejs_A Autocrine motility factor receptor, isoform 2; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.02 E-value=0.36 Score=38.68 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=40.1
Q ss_pred CCcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008380 20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~d 64 (567)
-......+|++|+|+| ..+.+.|..=|...+ .++.++++||++.
T Consensus 9 ~~~q~~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (58)
T 2ejs_A 9 SNSQLNAMAHQIQEMFPQVPYHLVLQDLQLTR-SVEITTDNILEGR 53 (58)
T ss_dssp CCCHHHHHHHHHHHHCCSSCHHHHHHHHHHHC-SHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHhcC
Confidence 3457889999999999 999999999998888 9999999999975
No 52
>2ekf_A Ancient ubiquitous protein 1; CUE, ubiquitin ligase complex, ubiquitin-conjugating enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.17 E-value=0.49 Score=38.26 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=39.3
Q ss_pred CcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008380 21 PAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (567)
Q Consensus 21 p~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~d 64 (567)
......+|++|+++| ..+.+.|..=|...+ .++.++++||++.
T Consensus 10 ~~ql~~mv~~V~~mfP~vp~~~I~~DL~~Tg-sVe~TienILeGr 53 (61)
T 2ekf_A 10 DVQLATLAQRVKEVLPHVPLGVIQRDLAKTG-CVDLTITNLLEGA 53 (61)
T ss_dssp CCCHHHHHHHHHHHCSSSCHHHHHHHHHTSC-CHHHHHHHHHSCC
T ss_pred cHHHHHHHHHHHHHcCCCCHHHHHHHHHHhC-CHHHHHHHHHcCC
Confidence 357889999999999 999999999998877 9999999999975
No 53
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=88.16 E-value=0.5 Score=42.10 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=32.2
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+.+.|.+|+|+ |.+++.|..||+.|++|++.|++.|+.
T Consensus 76 ~~~~v~~L~eM-GF~~~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 76 FLQLMSKFKEM-GFELKDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34456666664 899999999999999999999999875
No 54
>4g3o_A E3 ubiquitin-protein ligase AMFR; all-helical structure, BAG6; 1.60A {Homo sapiens}
Probab=87.98 E-value=0.38 Score=38.60 Aligned_cols=43 Identities=9% Similarity=0.169 Sum_probs=39.5
Q ss_pred CCcchHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 20 IPAGSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
++.....+|++|+++| +.+.+.|..-|... +.++.++++||++
T Consensus 13 ~~sql~~Mve~V~~mFPqv~~~~I~~DL~rT-gSVe~TienILeG 56 (58)
T 4g3o_A 13 FQGQLNAMAHQIQEMFPQVPYHLVLQDLQLT-RSVEITTDNILEG 56 (58)
T ss_dssp HHHHHHHHHHHHHHHCTTSCHHHHHHHHHHH-CCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCHHHHHHHHHcc
Confidence 5667889999999999 99999999999886 8999999999985
No 55
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=87.70 E-value=0.19 Score=39.74 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=32.2
Q ss_pred chHHHHHhhhhcc-CCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIV-NCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~-~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
..++.|++|+++| +...|=|-.+|..++++.+.||+.||.-
T Consensus 11 e~~~~~~~L~~MFP~lD~evI~~Vl~a~~G~~~~~IdaLLqm 52 (54)
T 1p3q_Q 11 ERKDTLNTLQNMFPDMDPSLIEDVCIAAASRIGPCVDALLSL 52 (54)
T ss_dssp HHHHHHHHHHHHSTTSCHHHHHHHHHHSCC--CGGGC-----
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHcCCCHHHHHHHHHhh
Confidence 5788999999999 9999999999999999999999999863
No 56
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=82.63 E-value=2 Score=33.96 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=33.9
Q ss_pred chHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 23 GSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
-+..++++|.|+==+..+.-+.+|+.||++++.||+.||.
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3556788888875567888899999999999999999995
No 57
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=82.49 E-value=1.4 Score=39.26 Aligned_cols=42 Identities=10% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 20 IPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+.+.-++.|++|.++ |.+...+..||+.|++|++.|++.|+.
T Consensus 4 l~~~e~~~v~~l~~M-GFp~~~~~kAl~~~g~~~e~amewL~~ 45 (118)
T 4ae4_A 4 MSPSERQCVETVVNM-GYSYECVLRAMKAAGANIEQILDYLFA 45 (118)
T ss_dssp SCHHHHHHHHHHHHT-TCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHc-CCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 667788899988765 999999999999999999999999996
No 58
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=82.37 E-value=0.96 Score=39.90 Aligned_cols=36 Identities=22% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHhhhhccCCChHHHHHHHHhc-CCCHHHHHHHHhc
Q 008380 26 KIVQSLKEIVNCPESEIYAMLKEC-NMDPNEAVNRLLS 62 (567)
Q Consensus 26 k~Vq~lkEi~~~seeei~~aL~dC-n~DpneAv~rLl~ 62 (567)
++|++|.+ .|.+...+..||+-| |+|+++|++.|+.
T Consensus 5 ~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~ 41 (126)
T 2lbc_A 5 SSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIV 41 (126)
T ss_dssp HHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 56777777 699999999999999 5599999999987
No 59
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=79.49 E-value=1.4 Score=34.02 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=29.9
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+..|..|.+. |.+.+++..||.-|++|++.|.++|++
T Consensus 5 e~~I~~L~s~-Gf~~~~~~rAL~ia~Nnie~A~nIL~e 41 (46)
T 2oo9_A 5 SSEIENLMSQ-GYSYQDIQKALVIAQNNIEMAKNILRE 41 (46)
T ss_dssp HHHHHHHHHT-TBCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3344444332 999999999999999999999999986
No 60
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=79.25 E-value=1.6 Score=35.65 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=36.4
Q ss_pred ccCCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 18 SSIPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 18 ~~ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
..+.+.-+..|.+|.. .|.+++-...||+.|++|+++|++.|.+
T Consensus 13 ~~ls~se~e~V~~Lvs-MGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 13 QMLSPSERQCVETVVN-MGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HTCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HhhCcchHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3455666777777663 3899999999999999999999999975
No 61
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=76.07 E-value=0.5 Score=56.35 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=33.7
Q ss_pred HHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHh
Q 008380 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLL 61 (567)
Q Consensus 26 k~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl 61 (567)
++|+.|+|.||..--||.+||.|||+|.++|++.|-
T Consensus 7 ~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR 42 (1289)
T 3avx_A 7 SLVKELRERTGAGMMDCKKALTEANGDIELAIENMR 42 (1289)
T ss_dssp SCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 569999999999999999999999999999999774
No 62
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.09 E-value=3.5 Score=33.26 Aligned_cols=38 Identities=8% Similarity=0.270 Sum_probs=35.1
Q ss_pred HHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 26 KIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 26 k~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.+|++..+|+|++++.-...|..++.|++.||+...+.
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~ 56 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQE 56 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 58999999999999999999999999999999987753
No 63
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=73.87 E-value=2.2 Score=36.39 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=35.3
Q ss_pred HHHHHhhhhcc--CCChHHHHHHHHhcCCCHHHHHHHHhcCC
Q 008380 25 RKIVQSLKEIV--NCPESEIYAMLKECNMDPNEAVNRLLSQD 64 (567)
Q Consensus 25 rk~Vq~lkEi~--~~seeei~~aL~dCn~DpneAv~rLl~~d 64 (567)
..-+.+|++|+ -.++..++-+--.|+.|++.|++.||+++
T Consensus 35 ~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~~~ 76 (83)
T 1ufz_A 35 YSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLEQD 76 (83)
T ss_dssp HHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHhcc
Confidence 34578999999 38999999999999999999999999753
No 64
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=72.36 E-value=3.7 Score=32.48 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=38.4
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCCccchhhhc
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSK 72 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d~f~eVkkK 72 (567)
+.-+.+|..+.+.+|.+-+=....|++|+-|.+.|+. .|.+.|++
T Consensus 5 ~~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~------~F~~l~~~ 49 (59)
T 1oai_A 5 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ------AFTHLKAK 49 (59)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHH------HHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHH------HHHHHHHc
Confidence 3557899999999999999999999999999999998 46666543
No 65
>2jz1_A Protein doublesex; sex determination, development, gene regulation, ubiquitin, transcription; NMR {Drosophila melanogaster}
Probab=57.75 E-value=4.8 Score=34.09 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=31.2
Q ss_pred hHHHHHhhhhccCCChH---HHHHHHHhcCCCHHHHHHHHhcC
Q 008380 24 SRKIVQSLKEIVNCPES---EIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~see---ei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+-+--|.|-|-|+.+=| =+|++|++.+.|++||..||-++
T Consensus 9 ll~~c~kLLEkF~YpWEMMpLMyVILK~a~~d~eeAsrrI~eg 51 (80)
T 2jz1_A 9 FLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEEG 51 (80)
T ss_dssp HHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 44555677788876655 36899999999999999999663
No 66
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=53.59 E-value=2.8 Score=40.63 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=0.0
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
.+++|+.|.++ |..++.+..||..|+.|.+.|++.||++
T Consensus 177 ~~~~v~~~~~m-gf~~~~~~~al~~~~~~~~~~~~~l~~~ 215 (216)
T 2pwq_A 177 REVIIKKITEM-GFSEDQAKNALIKANWNETLALNTLLEN 215 (216)
T ss_dssp ----------------------------------------
T ss_pred hhhHHHHHHHc-CCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence 35666666654 7888999999999999999999999974
No 67
>2l3n_A DNA-binding protein RAP1, telomere length regulat; TAZ1; NMR {Schizosaccharomyces pombe}
Probab=47.64 E-value=53 Score=28.07 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=34.4
Q ss_pred hHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 24 SRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 24 ~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+.+.|..|-..++.++...+.+++..++-+-.||-+||+
T Consensus 14 vdeaidnilrytnsteqqfleamestggrvriaiaklls 52 (104)
T 2l3n_A 14 VDEAIDNILRYTNSTEQQFLEAMESTGGRVRIAIAKLLS 52 (104)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCCeeehHHHHHHh
Confidence 345667777777999999999999999999999999998
No 68
>1zv1_A Doublesex protein; UBA domain, dimerization, sex determination, transcription factor, protein binding; 1.60A {Drosophila melanogaster} PDB: 2jz0_A
Probab=42.93 E-value=15 Score=29.99 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=31.9
Q ss_pred chHHHHHhhhhccCCChHH---HHHHHHhcCCCHHHHHHHHhcC
Q 008380 23 GSRKIVQSLKEIVNCPESE---IYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 23 ~~rk~Vq~lkEi~~~seee---i~~aL~dCn~DpneAv~rLl~~ 63 (567)
.+-+--|.|-|-|+.+=|= .|++|++.+.|++||..||-++
T Consensus 8 ~Ll~~c~kLLEkf~YpWEmMpLMYVILK~A~~d~eeAsrrI~Eg 51 (65)
T 1zv1_A 8 VFLDYCQKLLEKFRYPWELMPLMYVILKDADANIEEASRRIEEG 51 (65)
T ss_dssp HHHHHHHHHHHHTTCCGGGHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHhHHHHHHHhccCCCHHHHHHHHHHH
Confidence 3445556777878666553 6899999999999999999875
No 69
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=41.54 E-value=20 Score=29.37 Aligned_cols=15 Identities=7% Similarity=0.158 Sum_probs=12.4
Q ss_pred CCChHHHHHHHHhcC
Q 008380 36 NCPESEIYAMLKECN 50 (567)
Q Consensus 36 ~~seeei~~aL~dCn 50 (567)
+++++||..+|..|+
T Consensus 26 ~~t~~~l~~~F~~~G 40 (108)
T 1x4c_A 26 SGSWQDLKDHMREAG 40 (108)
T ss_dssp SCCHHHHHHHHGGGS
T ss_pred CCCHHHHHHHHHhcC
Confidence 778888888888886
No 70
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=34.30 E-value=18 Score=31.02 Aligned_cols=40 Identities=15% Similarity=0.356 Sum_probs=33.7
Q ss_pred hhhhccC---CChHHHHHHHHhcCCCHHHHHHHHhcCCccchh
Q 008380 30 SLKEIVN---CPESEIYAMLKECNMDPNEAVNRLLSQDPFHEV 69 (567)
Q Consensus 30 ~lkEi~~---~seeei~~aL~dCn~DpneAv~rLl~~d~f~eV 69 (567)
.|...+| ..++++++++..+--|..+.+++||+...|-+-
T Consensus 40 ~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lIe~e~~d~~ 82 (91)
T 2gpi_A 40 VLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLIEQEAFDVQ 82 (91)
T ss_dssp HHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHHHTTCCCTT
T ss_pred HHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHHHccccccC
Confidence 4455566 789999999999999999999999998776553
No 71
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=29.18 E-value=47 Score=32.04 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=38.0
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 18 ~~ip~~~rk~Vq~lkEi~-------~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
..+++.-++.|++||+.+ .++|.-++.-|+-|+.|+++|.++|..
T Consensus 24 ~~l~~~q~~~l~~lr~~l~~~~~~~~~dd~~LlRFLrarkfdv~~A~~~l~~ 75 (296)
T 1aua_A 24 GNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFEN 75 (296)
T ss_dssp TTCCTTHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357778888999998865 257889999999999999999998875
No 72
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=27.03 E-value=20 Score=35.50 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=13.7
Q ss_pred CCcchHHH----HHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCCccch
Q 008380 20 IPAGSRKI----VQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHE 68 (567)
Q Consensus 20 ip~~~rk~----Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d~f~e 68 (567)
+...-+|. ..-|+++++++++++-.+|+.|++++-.||-.+|.+-...+
T Consensus 236 ~~~~n~kl~~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~ 288 (306)
T 1nri_A 236 VQASNEKLKARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILSTLSKSE 288 (306)
T ss_dssp CCCCSHHHHHHHHHHHHHHSCCCC-----------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHhCCCHHH
Confidence 34444444 66778888999999999999999999999987765434333
No 73
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=25.61 E-value=61 Score=25.49 Aligned_cols=38 Identities=8% Similarity=0.100 Sum_probs=34.2
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHH
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNR 59 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~r 59 (567)
+.-+.+|..|...++.+-+=.+..|++++-|.+.|+..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~ 41 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKG 41 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44578899999999999999999999999999999973
No 74
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=25.04 E-value=15 Score=35.90 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred cchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhcCCccchhhhchhhh
Q 008380 22 AGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLSQDPFHEVKSKRDKR 76 (567)
Q Consensus 22 ~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~~d~f~eVkkKR~kk 76 (567)
+.-+.+|+.+.+.+|.+.+=+...|++|+-|.+.|+. .|.+.|++..-.
T Consensus 196 ~~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~------~F~~l~~~~~IP 244 (250)
T 1jkg_B 196 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQ------AFTHLKAKGEIP 244 (250)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHH------HHHHHHhcCCCC
Confidence 4444789999999999999999999999999999997 677776644333
No 75
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=24.70 E-value=16 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.046 Sum_probs=0.0
Q ss_pred hhccCCChHHHHHHHHhcCCCHHHHHHHHhcC
Q 008380 32 KEIVNCPESEIYAMLKECNMDPNEAVNRLLSQ 63 (567)
Q Consensus 32 kEi~~~seeei~~aL~dCn~DpneAv~rLl~~ 63 (567)
+++.++..+..+.+|++|++|+.+|+.+|...
T Consensus 154 rs~~g~n~EqAL~~L~~~~yDi~~AL~~L~~~ 185 (482)
T 2xag_B 154 KEKHGYNMEQALGMLFWHKHNIEKSLADLPNF 185 (482)
T ss_dssp --------------------------------
T ss_pred HHhcCccHHHHHHHHHHccCCHHHHHHHHhcc
Confidence 44457788889999999999999999988643
No 76
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=21.04 E-value=72 Score=31.95 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=37.5
Q ss_pred CCcchHHHHHhhhhccCCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 20 IPAGSRKIVQSLKEIVNCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 20 ip~~~rk~Vq~lkEi~~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
+..+-+.+|++...|||+++..-...|+.++.|++.|++....
T Consensus 11 l~~~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~ 53 (270)
T 3bq3_A 11 DASPEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD 53 (270)
T ss_dssp --CHHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566788999999999999999999999999999999986654
No 77
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=20.21 E-value=91 Score=31.06 Aligned_cols=45 Identities=13% Similarity=0.315 Sum_probs=37.9
Q ss_pred ccCCcchHHHHHhhhhcc-------CCChHHHHHHHHhcCCCHHHHHHHHhc
Q 008380 18 SSIPAGSRKIVQSLKEIV-------NCPESEIYAMLKECNMDPNEAVNRLLS 62 (567)
Q Consensus 18 ~~ip~~~rk~Vq~lkEi~-------~~seeei~~aL~dCn~DpneAv~rLl~ 62 (567)
..+.+.-++.|++||+.+ .+.|.-++.-|+-|+.|+++|.++|..
T Consensus 33 ~~lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL~~ 84 (320)
T 3q8g_A 33 GNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVE 84 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457778888898888865 367788999999999999999998875
No 78
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=20.03 E-value=65 Score=31.02 Aligned_cols=37 Identities=14% Similarity=0.400 Sum_probs=29.2
Q ss_pred HHHHHhhhhccCCChHHHHHHHHhcCCCH-----HHHHHHHhc
Q 008380 25 RKIVQSLKEIVNCPESEIYAMLKECNMDP-----NEAVNRLLS 62 (567)
Q Consensus 25 rk~Vq~lkEi~~~seeei~~aL~dCn~Dp-----neAv~rLl~ 62 (567)
+++|+.+.++ |..++.+..||..|+.|. .+..+++|+
T Consensus 170 ~~~v~~~~~m-g~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 211 (215)
T 1tte_A 170 HDLIDEFESQ-GFEKDKIVEVLRRLGVKSLDPNDNNTANRIIE 211 (215)
T ss_dssp HHHHHHHHHH-TCCHHHHHHHHHHSCCSSCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCcccchhhhhHHHHHH
Confidence 6788887664 678999999999999998 555666654
Done!