Query 008381
Match_columns 567
No_of_seqs 142 out of 167
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 23:06:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2498 IK cytokine down-regul 100.0 3E-117 7E-122 926.3 19.9 451 3-555 65-539 (544)
2 PF07808 RED_N: RED-like prote 100.0 1.7E-62 3.7E-67 484.1 11.3 218 4-223 1-238 (238)
3 PF07807 RED_C: RED-like prote 100.0 2.4E-58 5.1E-63 409.6 8.7 107 445-552 1-110 (118)
4 KOG2498 IK cytokine down-regul 99.9 1.7E-22 3.7E-27 214.0 7.7 303 18-337 13-319 (544)
5 COG4712 Uncharacterized protei 37.1 16 0.00034 37.2 1.0 33 481-513 81-114 (234)
6 KOG0573 Asparagine synthase [A 16.9 51 0.0011 37.4 0.4 65 441-514 433-501 (520)
7 PF12907 zf-met2: Zinc-binding 14.0 1.1E+02 0.0024 23.8 1.4 23 426-452 18-40 (40)
8 PF07845 DUF1636: Protein of u 12.8 94 0.002 28.8 0.9 27 150-176 57-86 (116)
9 PF08653 DASH_Dam1: DASH compl 11.7 78 0.0017 26.4 0.0 12 503-514 37-48 (58)
10 PF05422 SIN1: Stress-activate 10.8 87 0.0019 35.8 0.0 20 443-466 60-79 (523)
No 1
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-117 Score=926.25 Aligned_cols=451 Identities=47% Similarity=0.737 Sum_probs=387.8
Q ss_pred ccchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccc---cccccCCCCCcchHHHHHhhhhhhhhhhcC
Q 008381 3 SGKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELG---SFHAVAPPGNVDLRLADAQKLSIEKSKYLG 79 (567)
Q Consensus 3 ~~kk~~~~k~~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~---~~~a~~~~~~~d~~~~e~~~~~ieesk~~g 79 (567)
.++|+||+++++++.+++.| .+.+|||||+|||+|.|.||..+++. ++.+|.+....+...++.|+|+|++|+|||
T Consensus 65 e~~kal~~~~k~~h~~k~de-a~lkyRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~I~eSKfLG 143 (544)
T KOG2498|consen 65 EKKKALYGKLKKQHIEKEDE-AALKYRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQLIQESKFLG 143 (544)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHHHHHhhhcC
Confidence 47899999999999999666 46779999999999999999987643 588999988888888999999999999999
Q ss_pred CCccccccccchhHHHHHHHhhhhccCCCCCCCCCCCc-----cccccchhhhHhhH-----------HHHhhHhhhhcc
Q 008381 80 GDVEHTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGKS-----RTSKEDQQLSFRTA-----------MAKSVYQWIVKP 143 (567)
Q Consensus 80 gd~~~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~~-----~~~k~d~~~~F~t~-----------~~r~Vy~~i~k~ 143 (567)
|||+||||||||||+||++||.+|.....++++..+.. .+......+.|.++ |+|+||..||++
T Consensus 144 GDm~hTHLVkGLD~~LL~KVRse~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~~~~~r~~~~~l~~n 223 (544)
T KOG2498|consen 144 GDMEHTHLVKGLDYALLQKVRSEIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLKKKLGRNVYRVLFKN 223 (544)
T ss_pred CccceeeeecchhHHHHHHHHHHhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhhhhhcchhhhHhhhc
Confidence 99999999999999999999999998876655442221 11112234555555 899999999998
Q ss_pred cccccccccCCCCceEEEEecCCCCC-CCcchhhhhcccCCCC-CccccccccchhHHHHHHHHHHHHhcCCCCcc-hhh
Q 008381 144 QTVMKTNEMFLPGRMSFIFNTEGGYS-NDIPTTLHRSKADCPV-PDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKV-LKK 220 (567)
Q Consensus 144 k~~~k~nelFlPGRMaYvfdLe~e~~-~DIPTTL~RSKaDcp~-~ee~~~~~~~~~Vi~Kl~kImsylR~G~~gK~-~KK 220 (567)
+ ...+|++|+||||+||++|++++. .+|||||.||++|||. +++..++++|++||.+|.+|+||||.|.+.|+ ++|
T Consensus 224 ~-~~~~n~Lf~~GrmaYVviLddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~~~k 302 (544)
T KOG2498|consen 224 K-EDERNELFAPGRMAYVVILDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKPLKK 302 (544)
T ss_pred c-ccccccccCCCCcceeeeccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCcccc
Confidence 6 478999999999999999999977 9999999999999999 78889999999999999999999999997665 566
Q ss_pred hhhhhcccCCccccccccccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCCccccccCCCCCCCCCCCcccCCCcccc
Q 008381 221 KKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGKTEKEILPPPPPPPKKNHVDSREKQGPIVARSEEDDIFVGAGTDYT 300 (567)
Q Consensus 221 kkkErd~kGr~~~~~~d~d~e~k~~k~~~~~~~~~~~~~~l~p~~~~p~~~~~~~~~k~~~~~~~~~dddIF~d~G~DY~ 300 (567)
+.+.. .- |+ + ++..+.+||.+.| ||
T Consensus 303 rDk~k-----~~-----~~-------------------------~------------------P~~~~~~iy~~~g-~Y- 327 (544)
T KOG2498|consen 303 RDKPK-----LY-----FD-------------------------K------------------PVEGEKVIYEDEG-DY- 327 (544)
T ss_pred ccccc-----cc-----cc-------------------------C------------------ccccccccccccc-cc-
Confidence 55431 00 00 0 1245789998777 99
Q ss_pred CCCCCCCCCCCccccccCcccccccCCCCcCCCCCCCCCCCCccccccCcchHHHHHHhhcCCcccchhhHHHhhhcccc
Q 008381 301 VPGKDMNQSPVSEDMEESPRNKEKVSYFSESVYGPVPPAEPPLAWQDTNGYDAMQAQALAGGYQGEWQDYQYAEQLAYPE 380 (567)
Q Consensus 301 vP~~~~~~s~~sed~~~~~~~~~r~sYF~~p~~~p~pp~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 380 (567)
||....+ .+.|+... |++++.+++..++..+|+.|+++ |.+
T Consensus 328 ~P~~~s~----------------------------------~~~~~~ks-~~a~qdrg~d~~~d~e~~~~rd~----~r~ 368 (544)
T KOG2498|consen 328 VPSTPSA----------------------------------GSRDQGKS-YGAMQDRGRDRGRDRERQRYRDA----NRD 368 (544)
T ss_pred cCCCCCC----------------------------------Cccccccc-cchhhhcccCCCCcchhhhhhhh----hhh
Confidence 8853111 12344433 78888889999999999999986 667
Q ss_pred ccccchhhhHhhhhcCCCCCCcccccHHHHhhccCCcccchHHHHHHHHHhhhhccCCCCCCCccccccCChhhhhhccc
Q 008381 381 QYLQPDMQTYEMQAGLNMPQDPRFMTQEEKDRGLGSVFKRDDQRLLQLREKDAREKDPNFISESYSECYPGYQEYNREIV 460 (567)
Q Consensus 381 q~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~gl~~~f~rdd~~~~~~re~~arekdp~f~~dsYAECYPG~~e~~~~~~ 460 (567)
+|+++++.+|....- ..+|..|++|++++|++++|.+++|+ |+++-.++++||-|+|+||+|||||++|||++||
T Consensus 369 r~lep~~~~~~~~~~---~l~p~q~skEe~~~~~~~~~~~~~~~--~~~eerkk~kd~~~vsegY~ECYPgl~em~hei~ 443 (544)
T KOG2498|consen 369 RYLEPGKEGYSYFEE---LLDPQQMSKEEKDRGLGIVSIREDQR--QKPEERKKEKDPFFVSEGYAECYPGLQEMNHEIV 443 (544)
T ss_pred hhhccccccchhhhh---hcchhhhhhccccccccccccchhhh--hchhhHhhhccccccccchhhhccchhhhccccc
Confidence 889888888876542 46799999999999999999999988 8899999999999999999999999999999999
Q ss_pred CCCcccccccccCCCCCCCCcccCcCcCHHHHHHhhHhhhhchhhHHhhcccccccccccccc--hhhHhHHHHHHHHHH
Q 008381 461 DSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQN--KDQKLTNELHKINKI 538 (567)
Q Consensus 461 DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRK~n--~d~kLdre~~KI~~I 538 (567)
|||||+||||||||| |||+||||||||||||++||++||||||||||||||||||||||||+ .+|+|||||||||+|
T Consensus 444 ~SDeE~DysKMD~Gg-Kk~~l~RWDFdTeEEy~~Yme~kEAlPKAAfQyGvKm~dGRKtrkq~~~~~~~Ldre~~~InkI 522 (544)
T KOG2498|consen 444 DSDEEVDYSKMDMGG-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMQDGRKTRKQKRNDKAELDRELHKINKI 522 (544)
T ss_pred ccccccchhhhhccC-CCCCccccCcccHHHHHHHhhhhhhchHHHHHhcccccccchhhhcccchHHHHHHHHHHHHHH
Confidence 999999999999999 79999999999999999999999999999999999999999999985 789999999999999
Q ss_pred HHhhhcccCCCCCCCCc
Q 008381 539 LARKKMEKDTNGEGGHY 555 (567)
Q Consensus 539 l~krK~~~~~~~~~~~~ 555 (567)
|.|||++++||++|+.|
T Consensus 523 i~krK~~~~ggggg~e~ 539 (544)
T KOG2498|consen 523 ITKRKMEKDGGGGGAEY 539 (544)
T ss_pred HHHhhccccCCCCcccc
Confidence 99999999999888433
No 2
>PF07808 RED_N: RED-like protein N-terminal region; InterPro: IPR012916 This domain contains sequences that are similar to the N-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences and a putative trimeric coiled-coil region [], suggesting that these proteins are expressed in the nucleus []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated, or that the protein self-aggregates extremely efficiently []. ; GO: 0005634 nucleus
Probab=100.00 E-value=1.7e-62 Score=484.08 Aligned_cols=218 Identities=46% Similarity=0.807 Sum_probs=192.6
Q ss_pred cchhhHHhhhccccCCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCcc
Q 008381 4 GKKYYKEKIARRKDEKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVE 83 (567)
Q Consensus 4 ~kk~~~~k~~~~e~~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~ 83 (567)
|||+|++++++++..+..+ ++++|||||+|||+|.++||..+++..|+++.+.+.++..+++.++++|++|+|||||++
T Consensus 1 Kkk~~~~~~~~~~~~~~~~-~~~~YrDRA~eRR~~~~~d~~~~~~~~~~a~~~~~~~~~~~~e~~~~~i~esk~lGGD~~ 79 (238)
T PF07808_consen 1 KKKKKYKKLKKQEEPKGKK-LAPGYRDRAKERREGENDDYEEAELSALRALEPDVKLDQETAERRRQLIEESKYLGGDLE 79 (238)
T ss_pred CCchhhhhHHhhhcccccc-cccchhhHHHHHHcccCcchhhhHHHHHHHhhhhcccchhhHHHHHHHHHHHhhccCCcc
Confidence 7899999999999998887 699999999999999999999988888999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHhhhhccCCCCCCCCCCC---c--------------cccccchhhhHhhHHHHhhHhhh--hccc
Q 008381 84 HTHLVKGLDYALLNKVRSEIDKKPDAGDDTDGK---S--------------RTSKEDQQLSFRTAMAKSVYQWI--VKPQ 144 (567)
Q Consensus 84 ~t~lvkgld~~ll~~~r~~~~~~~~~ede~~~~---~--------------~~~k~d~~~~F~t~~~r~Vy~~i--~k~k 144 (567)
||||||||||+||+|||++|..+..++++..+. + ........+.|.+.++++||+++ ++++
T Consensus 80 ~THLVKGLD~~LL~kvR~ei~~~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~I~~~~~~~~~~ 159 (238)
T PF07808_consen 80 HTHLVKGLDFALLEKVRAEIAKKEKEEEEEEEKVEEEEEQELDEEEEELEEKEKESEEEIEFKTKLARNIFKTLFQFKSK 159 (238)
T ss_pred ccchhhhhcHHHHHHHHHHHhcccccchhHHHhhhhhhhhhcchhhhhhhhhhcccccchhHhhHHHHHHHHHHHhcccc
Confidence 999999999999999999998876554431100 0 01123456999999999999999 4554
Q ss_pred ccccccccCCCCceEEEEecCCCC-CCCcchhhhhcccCCCCCccccccccchhHHHHHHHHHHHHhcCCCCcchhhhhh
Q 008381 145 TVMKTNEMFLPGRMSFIFNTEGGY-SNDIPTTLHRSKADCPVPDEMVTVSVDGSVLDRIAKIMTYLRLGSSGKVLKKKKK 223 (567)
Q Consensus 145 ~~~k~nelFlPGRMaYvfdLe~e~-~~DIPTTL~RSKaDcp~~ee~~~~~~~~~Vi~Kl~kImsylR~G~~gK~~KKkkk 223 (567)
. ..+|++|+||||||||||++++ .+||||||+|||+|||.+++++++++|++||+||+|||||||+|+++|++|||+|
T Consensus 160 ~-~~~nelF~pGRMaYvfdL~~e~~~~DIPTTliRSK~Dcp~~~~~~t~~~n~~vi~kL~qilsylr~g~~~kk~KKk~k 238 (238)
T PF07808_consen 160 K-IERNELFLPGRMAYVFDLDDEYAESDIPTTLIRSKADCPVPEEQVTLTTNDIVINKLTQILSYLRQGSRHKKNKKKKK 238 (238)
T ss_pred c-cccccccCCcceEEEEecCCCcccccCCCeeecchhhCccchheeccccchHHHHHHHHHHHHHhcccchhhhhccCC
Confidence 4 5679999999999999999998 5999999999999999999999999999999999999999999998888777653
No 3
>PF07807 RED_C: RED-like protein C-terminal region; InterPro: IPR012492 This family contains sequences that are similar to the C-terminal region of Red protein (Q13123 from SWISSPROT). This and related proteins are thought to be localised to the nucleus, and contain a RED repeat which consists of a number of RE and RD sequence elements []. The region in question has several conserved NLS sequences []. The function of Red protein is unknown, but efficient sequestration to nuclear bodies suggests that its expression may be tightly regulated or that the protein self-aggregates extremely efficiently [].
Probab=100.00 E-value=2.4e-58 Score=409.56 Aligned_cols=107 Identities=68% Similarity=1.103 Sum_probs=101.5
Q ss_pred cccccCChhhhhhcccCCCcccccccccCCCCCCCCcccCcCcCHHHHHHhhHhhhhchhhHHhhccccccccccccc--
Q 008381 445 YSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRLHRWDFETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQ-- 522 (567)
Q Consensus 445 YAECYPG~~e~~~~~~DSDDE~DysKMD~G~~~KG~~~RWDFdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRK~-- 522 (567)
|||||||++||+++++|||||+||||||||| +||||+||||+|+|||++||++|||||||||||||||+|||||||+
T Consensus 1 YAECYPg~~e~~~~~~DSDdE~D~skMD~G~-kkg~~~RwDFdT~EEy~~Y~~~kEalPKAAfQyGvKm~dGrKtrk~~~ 79 (118)
T PF07807_consen 1 YAECYPGYMEYNDAIVDSDDEVDYSKMDMGN-KKGPLGRWDFDTEEEYSKYMEQKEALPKAAFQYGVKMADGRKTRKQGE 79 (118)
T ss_pred CccccccHHHHhccccCCchhhHHhhhcccc-cCCCcccCCCCCHHHHHHHHhhhhhCcHHHHHhccccccccccccccc
Confidence 9999999999999999999999999999999 5999999999999999999999999999999999999999999996
Q ss_pred -chhhHhHHHHHHHHHHHHhhhcccCCCCCC
Q 008381 523 -NKDQKLTNELHKINKILARKKMEKDTNGEG 552 (567)
Q Consensus 523 -n~d~kLdre~~KI~~Il~krK~~~~~~~~~ 552 (567)
+++++|||||++|++||++||++++++..+
T Consensus 80 k~ek~kLdre~~kI~~Il~krk~~~~g~~~~ 110 (118)
T PF07807_consen 80 KDEKAKLDREWQKIQKILKKRKAEKDGGGGG 110 (118)
T ss_pred hhHHHHHhHHHHHHHHHHHHhcccCCCCCCC
Confidence 467889999999999999999888766544
No 4
>KOG2498 consensus IK cytokine down-regulator of HLA class II [Signal transduction mechanisms]
Probab=99.86 E-value=1.7e-22 Score=213.99 Aligned_cols=303 Identities=25% Similarity=0.250 Sum_probs=239.6
Q ss_pred CCCCCCCCCCcchhHHhhhccCCCCCcccccccccccCCCCCcchHHHHHhhhhhhhhhhcCCCccccccccchhHHHHH
Q 008381 18 EKPEEPEQPKYRDRAKERREDQNPDYEPTELGSFHAVAPPGNVDLRLADAQKLSIEKSKYLGGDVEHTHLVKGLDYALLN 97 (567)
Q Consensus 18 ~k~~E~~~~~YrDRA~ERR~g~~~D~~~~~~~~~~a~~~~~~~d~~~~e~~~~~ieesk~~ggd~~~t~lvkgld~~ll~ 97 (567)
+++.+..-.+|+++++++|. .+++|+.....+++..++.+-.+......+ +++.+++|+|++.++|+|| ||+++|.
T Consensus 13 ~kL~ndDFRKLL~tpra~~p-a~~~~a~p~~ss~~~~~p~~~~~~~~~~Ar--~~e~~kal~~~~k~~h~~k-~dea~lk 88 (544)
T KOG2498|consen 13 SKLTNDDFRKLLATPRAARP-ANPTSAPPSKSSFHHEMPREYKEDEDKAAR--SREKKKALYGKLKKQHIEK-EDEAALK 88 (544)
T ss_pred hhcccchhHHHhcCcccCCC-CCcccCCcccCcccccCChhhhccccchhh--hhhhhHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555556899999999998 689999988889999998877766554444 6788999999999999999 9999998
Q ss_pred HHhhhhccCCCCCCCCCCCccccccchhhhHhhHHHHhhHhhhhcccccccccccCCCCceEEEEecCCCCCCCcchhhh
Q 008381 98 KVRSEIDKKPDAGDDTDGKSRTSKEDQQLSFRTAMAKSVYQWIVKPQTVMKTNEMFLPGRMSFIFNTEGGYSNDIPTTLH 177 (567)
Q Consensus 98 ~~r~~~~~~~~~ede~~~~~~~~k~d~~~~F~t~~~r~Vy~~i~k~k~~~k~nelFlPGRMaYvfdLe~e~~~DIPTTL~ 177 (567)
+|.++.......+.+.++...+.+.+.+.|.+.+.+.+++++.+.+. +..+ +||+|+|.++..+..-....|++++.
T Consensus 89 -yRdra~errdg~~~D~~~~~~pst~qyrav~~~a~k~~~q~i~rrq~-I~eS-KfLGGDm~hTHLVkGLD~~LL~KVRs 165 (544)
T KOG2498|consen 89 -YRDRAAERRDGVNKDYEETELPSTAQYRAVGPDAEKDKDQAIKRRQL-IQES-KFLGGDMEHTHLVKGLDYALLQKVRS 165 (544)
T ss_pred -HHHHHhhccCCcCCCcccccCcchhhhhhhcchhhhhhHHHHHHHHH-HHHh-hhcCCccceeeeecchhHHHHHHHHH
Confidence 77777766554333323333456778899999999999999998875 3344 99999999999999888899999999
Q ss_pred hcccCCCCCccccccccch--hHHHHHHHHHHHHhcCCCCcchhhhhhhhcccCCccccccccccccCCCCCCCCCCCCC
Q 008381 178 RSKADCPVPDEMVTVSVDG--SVLDRIAKIMTYLRLGSSGKVLKKKKKERDVKGKTSTVVNEYDEEDKPSKANSGIPNGK 255 (567)
Q Consensus 178 RSKaDcp~~ee~~~~~~~~--~Vi~Kl~kImsylR~G~~gK~~KKkkkErd~kGr~~~~~~d~d~e~k~~k~~~~~~~~~ 255 (567)
++.+.|+..++.++..+++ ++.+.+.+|+++||+|..++.++ ++..+... .+++-+++++-..-.....++....
T Consensus 166 e~~a~d~~~ee~~~~~vdE~~sa~~~~~kiea~~r~~e~~~~~~-~~~~r~~~--~~l~~n~~~~~n~Lf~~GrmaYVvi 242 (544)
T KOG2498|consen 166 EIAAKDDEEEELMEKPVDEKKSAEDPEEKIEAELRLGESGKVLK-KKLGRNVY--RVLFKNKEDERNELFAPGRMAYVVI 242 (544)
T ss_pred HhhccCCchHHHhhhhccccccccchHHHHHHHHhhchhhhhhh-hhhcchhh--hHhhhccccccccccCCCCcceeee
Confidence 9999999999989999999 99999999999999999999999 45566544 3445666665445556666777888
Q ss_pred cccccCCCCCCC-CCCCCCc-cccccCCCCCCCCCCCcccCCCccccCCCCCCCCCCCccccccCcccccccCCCCcCCC
Q 008381 256 TEKEILPPPPPP-PKKNHVD-SREKQGPIVARSEEDDIFVGAGTDYTVPGKDMNQSPVSEDMEESPRNKEKVSYFSESVY 333 (567)
Q Consensus 256 ~~~~~l~p~~~~-p~~~~~~-~~~k~~~~~~~~~dddIF~d~G~DY~vP~~~~~~s~~sed~~~~~~~~~r~sYF~~p~~ 333 (567)
.+.++++|+.|. +.-+..+ +.-...+++....|+.||...+++|.++..+..+++ .+.|++.+ +||..|++
T Consensus 243 LddE~~~tdiPttL~rs~~dlp~~~E~~~tl~tnd~~I~kls~vls~lr~~~~~kK~------~~krDk~k-~~~~~P~~ 315 (544)
T KOG2498|consen 243 LDDEVLETDIPTTLGRSKLDLPTKQEEPPTLTTNDIVIFKLSQVLSYLRAGDRNKKP------LKKRDKPK-LYFDKPVE 315 (544)
T ss_pred ccccccCCCCCcccccccccccchhccccccccccHHHhhhhhhhhhhccCCcccCc------cccccccc-ccccCccc
Confidence 999999988884 4445556 444556777889999999999999988988777764 34555666 88888776
Q ss_pred CCCC
Q 008381 334 GPVP 337 (567)
Q Consensus 334 ~p~p 337 (567)
+--.
T Consensus 316 ~~~~ 319 (544)
T KOG2498|consen 316 GEKV 319 (544)
T ss_pred cccc
Confidence 6443
No 5
>COG4712 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.13 E-value=16 Score=37.21 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=26.2
Q ss_pred cccCcCcCHHHHHHhhHhh-hhchhhHHhhcccc
Q 008381 481 LHRWDFETEEEWATYNEQK-EAMPKAAFQFGVKM 513 (567)
Q Consensus 481 ~~RWDFdTeEEy~~Ym~~k-EAlPKAAfQyGVKm 513 (567)
|+|||.-++-+-+.|..+= -+|-.|||||||=.
T Consensus 81 VTk~D~ge~~~~ea~Kg~aSdsmKRaavqfGIGR 114 (234)
T COG4712 81 VTKQDVGEESNTEAEKGQASDSMKRAAVQFGIGR 114 (234)
T ss_pred eeeccccccchhHHHhcccchHHHHHHhhhccch
Confidence 4789988888877777653 57899999999953
No 6
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=16.87 E-value=51 Score=37.38 Aligned_cols=65 Identities=32% Similarity=0.297 Sum_probs=41.4
Q ss_pred CCCccccc-cCChhhhhhcccCCCcccccccccCCCCCCC-CcccCcCcCHHHHHHhhHhhhhc--hhhHHhhccccc
Q 008381 441 ISESYSEC-YPGYQEYNREIVDSDDEDDLSKMDMGGRAKG-RLHRWDFETEEEWATYNEQKEAM--PKAAFQFGVKMQ 514 (567)
Q Consensus 441 ~~dsYAEC-YPG~~e~~~~~~DSDDE~DysKMD~G~~~KG-~~~RWDFdTeEEy~~Ym~~kEAl--PKAAfQyGVKm~ 514 (567)
++++=-|| ||=+.|+ .+.=|-...=++||++|-+. | ++ ---|+..|..-.-+- ||-|.|||-||+
T Consensus 433 iad~Gke~R~PFLde~--vV~~~~~l~~~~k~~l~l~G-G~Kl------llRe~~~~lGl~~~s~~pKrAmQFGSr~A 501 (520)
T KOG0573|consen 433 IADSGKEVRSPFLDEN--VVKLSNALPVSVKMMLGLRG-GEKL------LLREAGRRLGLPSASTEPKRAMQFGSRMA 501 (520)
T ss_pred hhccCceEeccchHHH--HHHHHHhcchhHHhhhcccc-hhhH------HHHHHHHHhCCCcccccchHHHHhhhhhh
Confidence 67777788 5655432 22233334445699988742 3 11 123677777766654 999999999998
No 7
>PF12907 zf-met2: Zinc-binding
Probab=14.03 E-value=1.1e+02 Score=23.79 Aligned_cols=23 Identities=35% Similarity=0.858 Sum_probs=13.9
Q ss_pred HHHHHhhhhccCCCCCCCccccccCCh
Q 008381 426 LQLREKDAREKDPNFISESYSECYPGY 452 (567)
Q Consensus 426 ~~~re~~arekdp~f~~dsYAECYPG~ 452 (567)
.+|+++.+. |-|- ..++||+|++
T Consensus 18 ~~L~eH~en-KHpK---~~~~~CFP~l 40 (40)
T PF12907_consen 18 PQLKEHAEN-KHPK---NTFEECFPNL 40 (40)
T ss_pred HHHHHHHHc-cCCC---CCHHHcCCCC
Confidence 345665542 2332 5699999985
No 8
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=12.83 E-value=94 Score=28.81 Aligned_cols=27 Identities=19% Similarity=0.444 Sum_probs=18.5
Q ss_pred cccC-CCCceEEEE-ecCCC-CCCCcchhh
Q 008381 150 NEMF-LPGRMSFIF-NTEGG-YSNDIPTTL 176 (567)
Q Consensus 150 nelF-lPGRMaYvf-dLe~e-~~~DIPTTL 176 (567)
+.+| .|||.+|+| ||+++ ...+|....
T Consensus 57 tVA~~~~gK~tYlfGdl~p~~~a~~il~~a 86 (116)
T PF07845_consen 57 TVALQAPGKWTYLFGDLDPDEDAEDILAFA 86 (116)
T ss_pred EEEEEcCCCcEEEEecCCcccCHHHHHHHH
Confidence 4445 599999999 78874 236665553
No 9
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=11.68 E-value=78 Score=26.35 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=9.1
Q ss_pred hhhHHhhccccc
Q 008381 503 PKAAFQFGVKMQ 514 (567)
Q Consensus 503 PKAAfQyGVKm~ 514 (567)
.-|+|.||.+|+
T Consensus 37 SFasfLYGl~mn 48 (58)
T PF08653_consen 37 SFASFLYGLNMN 48 (58)
T ss_pred HHHHHHHHHHHH
Confidence 457888888875
No 10
>PF05422 SIN1: Stress-activated map kinase interacting protein 1 (SIN1); InterPro: IPR008828 This family consists of several stress-activated map kinase interacting protein 1 (MAPKAP1 OR SIN1) sequences. The Schizosaccharomyces pombe Sty1/Spc1 mitogen-activated protein (MAP) kinase is a member of the eukaryotic stress-activated MAP kinase (SAPK) family. Sin1 interacts with Sty1/Spc1. Cells lacking Sin1 display many, but not all, of the phenotypes of cells lacking the Sty1/Spc1 MAP kinase including sterility, multiple stress sensitivity and a cell-cycle delay. Sin1 is phosphorylated after stress but this is not Sty1/Spc1-dependent [].; PDB: 3VOQ_B.
Probab=10.78 E-value=87 Score=35.84 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=0.0
Q ss_pred CccccccCChhhhhhcccCCCccc
Q 008381 443 ESYSECYPGYQEYNREIVDSDDED 466 (567)
Q Consensus 443 dsYAECYPG~~e~~~~~~DSDDE~ 466 (567)
..++|||||+ +.-+||||..
T Consensus 60 ~~~~~~~~~~----dlsDd~d~~~ 79 (523)
T PF05422_consen 60 RVEFECYPSS----DLSDDEDDGD 79 (523)
T ss_dssp ------------------------
T ss_pred cccccccccc----ccCcCccccc
Confidence 4789999998 3445555433
Done!