Query 008381
Match_columns 567
No_of_seqs 142 out of 167
Neff 3.7
Searched_HMMs 29240
Date Tue Mar 26 00:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys3_A UNC-112-related protein 14.8 1.8E+02 0.006 26.7 4.6 41 486-541 94-134 (137)
2 2i5e_A Hypothetical protein MM 14.2 82 0.0028 28.7 2.3 33 483-518 169-206 (211)
3 2jrw_A Cyclic extended PEP.1; 8.4 1.6E+02 0.0055 19.9 1.5 15 325-339 9-23 (26)
4 3oak_C Transcription elongatio 6.3 1.3E+02 0.0043 21.5 0.2 9 290-299 15-23 (31)
5 2i7u_A Four-alpha-helix bundle 5.8 5E+02 0.017 20.4 3.5 18 524-541 7-24 (62)
6 2hm3_A Nematocyst outer WALL a 5.8 89 0.0031 21.8 -0.7 11 442-452 14-24 (31)
7 2l60_A Peptide YY; GPCR ligand 5.3 3.2E+02 0.011 20.6 1.9 14 485-498 14-27 (41)
8 1iyc_A Scarabaecin; antifungal 5.3 1.6E+02 0.0055 21.1 0.3 13 174-186 9-21 (36)
9 2q07_A Uncharacterized protein 5.2 3.6E+02 0.012 27.3 2.9 79 440-541 70-179 (306)
10 1wvk_A AT2G23090/F21P24.15; st 5.1 1.7E+02 0.0059 24.9 0.4 10 443-452 75-84 (86)
No 1
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=14.82 E-value=1.8e+02 Score=26.67 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=30.6
Q ss_pred CcCHHHHHHhhHhhhhchhhHHhhcccccccccccccchhhHhHHHHHHHHHHHHh
Q 008381 486 FETEEEWATYNEQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNELHKINKILAR 541 (567)
Q Consensus 486 FdTeEEy~~Ym~~kEAlPKAAfQyGVKm~DGRKTRK~n~d~kLdre~~KI~~Il~k 541 (567)
+||+|+|+..|. ||=.|+ +|-=|+|- --.+|.+.|...|+-
T Consensus 94 cdsEeqy~~WMa---A~rlAs--kgktma~~----------sy~~ev~~i~~~l~~ 134 (137)
T 2ys3_A 94 CQDEQQYARWMA---GCRLAS--KGRTMADS----------SYTSEVQAILAFLSL 134 (137)
T ss_dssp ESSHHHHHHHHH---HHHHHH--TSCCTTST----------HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH---HHHHhc--cCcchhhh----------hhHHHHHHHHHHHHh
Confidence 899999999997 666666 66666664 466677777776653
No 2
>2i5e_A Hypothetical protein MM_2497; APC86122, methanosarcina mazei GO1, hypothetic protein, STRU genomics, PSI-2, protein structure initiative; 2.10A {Methanosarcina mazei} SCOP: c.68.1.21
Probab=14.21 E-value=82 Score=28.73 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=24.1
Q ss_pred cCcCcCHHHHHHhhHh-----hhhchhhHHhhccccccccc
Q 008381 483 RWDFETEEEWATYNEQ-----KEAMPKAAFQFGVKMQDGRK 518 (567)
Q Consensus 483 RWDFdTeEEy~~Ym~~-----kEAlPKAAfQyGVKm~DGRK 518 (567)
.||.||.|+|...... ++.|-. . |.|.+.+||=
T Consensus 169 ~~DVDTpeDl~~~~~~~~g~t~~~l~~--~-~~~~~~~~~~ 206 (211)
T 2i5e_A 169 GTDIDEPEDLVELLIHGKGAAKDYIES--K-FRLEVKKGRV 206 (211)
T ss_dssp TCCCCSHHHHHHHHHHCCSHHHHHHHT--T-EEEEECSSSE
T ss_pred ccCCCCHHHHHHHHHcCCchHHHHHHH--h-heeeccCCce
Confidence 4899999999887664 544433 3 8888888873
No 3
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=8.35 E-value=1.6e+02 Score=19.87 Aligned_cols=15 Identities=53% Similarity=1.010 Sum_probs=11.5
Q ss_pred cCCCCcCCCCCCCCC
Q 008381 325 VSYFSESVYGPVPPA 339 (567)
Q Consensus 325 ~sYF~~p~~~p~pp~ 339 (567)
..||++..|-|+||-
T Consensus 9 enyfserpyhppppc 23 (26)
T 2jrw_A 9 ENYFSERPYHPPPPC 23 (26)
T ss_dssp SSSCCSSSCCSCSCC
T ss_pred hhhcccCCCCCCCCC
Confidence 369999888887753
No 4
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=6.26 E-value=1.3e+02 Score=21.53 Aligned_cols=9 Identities=78% Similarity=1.508 Sum_probs=7.1
Q ss_pred CcccCCCccc
Q 008381 290 DIFVGAGTDY 299 (567)
Q Consensus 290 dIF~d~G~DY 299 (567)
.|| |+|.||
T Consensus 15 eiF-GdG~dY 23 (31)
T 3oak_C 15 DIF-GDGHDY 23 (31)
T ss_dssp HHH-CCSCTT
T ss_pred HHh-CCCchh
Confidence 588 578898
No 5
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=5.84 E-value=5e+02 Score=20.40 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=13.6
Q ss_pred hhhHhHHHHHHHHHHHHh
Q 008381 524 KDQKLTNELHKINKILAR 541 (567)
Q Consensus 524 ~d~kLdre~~KI~~Il~k 541 (567)
+.+||=.||+|+..--+|
T Consensus 7 eaaklfeewkklaeeaak 24 (62)
T 2i7u_A 7 EAAKLFEEWKKLAEEAAK 24 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 468999999998655443
No 6
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=5.75 E-value=89 Score=21.81 Aligned_cols=11 Identities=45% Similarity=1.153 Sum_probs=8.6
Q ss_pred CCccccccCCh
Q 008381 442 SESYSECYPGY 452 (567)
Q Consensus 442 ~dsYAECYPG~ 452 (567)
-|.|-||-||-
T Consensus 14 gdcypeckpgc 24 (31)
T 2hm3_A 14 GDCYPECKPGC 24 (31)
T ss_dssp GGGTTTTCHHH
T ss_pred ccccCccCCCc
Confidence 37888888875
No 7
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=5.33 E-value=3.2e+02 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=11.9
Q ss_pred cCcCHHHHHHhhHh
Q 008381 485 DFETEEEWATYNEQ 498 (567)
Q Consensus 485 DFdTeEEy~~Ym~~ 498 (567)
||.|.|+++.|...
T Consensus 14 ~~aspEela~Y~~~ 27 (41)
T 2l60_A 14 KKLSPEELNRYYAS 27 (41)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 78999999999753
No 8
>1iyc_A Scarabaecin; antifungal peptide, antimicrobial peptide, beetle, chitin-binding, antifungal protein; NMR {Synthetic} SCOP: g.31.1.2
Probab=5.27 E-value=1.6e+02 Score=21.13 Aligned_cols=13 Identities=38% Similarity=0.784 Sum_probs=10.6
Q ss_pred hhhhhcccCCCCC
Q 008381 174 TTLHRSKADCPVP 186 (567)
Q Consensus 174 TTL~RSKaDcp~~ 186 (567)
..|+||+..||.-
T Consensus 9 kvlirsrsncpkg 21 (36)
T 1iyc_A 9 KVLIRSRSNCPKG 21 (36)
T ss_dssp SCCCTTTSCCCSS
T ss_pred eEEEeeccCCCCc
Confidence 3589999999965
No 9
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=5.18 E-value=3.6e+02 Score=27.25 Aligned_cols=79 Identities=11% Similarity=0.244 Sum_probs=42.5
Q ss_pred CCCCccccccCChhhhhhcccCCCcccccccccCCCCCCCCc-ccCcCc----CHHHHHHhhHh--------------hh
Q 008381 440 FISESYSECYPGYQEYNREIVDSDDEDDLSKMDMGGRAKGRL-HRWDFE----TEEEWATYNEQ--------------KE 500 (567)
Q Consensus 440 f~~dsYAECYPG~~e~~~~~~DSDDE~DysKMD~G~~~KG~~-~RWDFd----TeEEy~~Ym~~--------------kE 500 (567)
.+|-..++|||-.| |+ -|+ +.||.+ ..+-.+.|.+. ||
T Consensus 70 ~VP~ELe~~YP~aq-yd----------------------~pv~g~~~~ee~~~~~~~l~~yl~~~~y~~iia~~~~~~~~ 126 (306)
T 2q07_A 70 VVPREFELLYPAVN-YD----------------------TPVTGHWSEEEVSFVAGWLKRFIEKGGFRKVVAHVTGGYRK 126 (306)
T ss_dssp EEEGGGTTC-----------------------------------CCCHHHHHHHHHHHHHHHHHHTCSEEEECCCTHHHH
T ss_pred EccHHHhccCCHHh-cc----------------------CcccCcCCHHHHHHHHHHHHHHHhhCCCceEEEecchHHHH
Confidence 35788899999887 41 112 358777 23566678754 56
Q ss_pred hchhhHHhhccc---cccccccccc---chhh------HhHHHHHHHHHHHHh
Q 008381 501 AMPKAAFQFGVK---MQDGRKTRKQ---NKDQ------KLTNELHKINKILAR 541 (567)
Q Consensus 501 AlPKAAfQyGVK---m~DGRKTRK~---n~d~------kLdre~~KI~~Il~k 541 (567)
++-+|+=+.|+. ...|+-|-.. |-++ +...++..|+.|+.-
T Consensus 127 i~~~~~e~~~~~~~~~~~~~~~~~~sl~~l~~~l~~~~~~~~d~~~ir~i~~y 179 (306)
T 2q07_A 127 VVERVEDEVEAEVVYTAEKDVLSDESIERLKQEIESKGKVDLYRRILEHMLSY 179 (306)
T ss_dssp HHHHHHTTCSSEEEECCSSCTTSHHHHHHHHHHHCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCceEEeecCCCCCHHHHHHHHHHhhhccccHHHHHHHHHHHHH
Confidence 777888888886 4445433221 1112 234678888888763
No 10
>1wvk_A AT2G23090/F21P24.15; structural genomics, protein structure initiative, cell free, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: g.82.1.1
Probab=5.09 E-value=1.7e+02 Score=24.94 Aligned_cols=10 Identities=20% Similarity=0.707 Sum_probs=8.1
Q ss_pred CccccccCCh
Q 008381 443 ESYSECYPGY 452 (567)
Q Consensus 443 dsYAECYPG~ 452 (567)
..+.||||++
T Consensus 75 ~~~~eCFP~~ 84 (86)
T 1wvk_A 75 ADVVACFPHL 84 (86)
T ss_dssp CGGGTTSGGG
T ss_pred CCHHHHCcCC
Confidence 3489999987
Done!