Query 008382
Match_columns 567
No_of_seqs 497 out of 1815
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008382.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008382hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.8 1.2E-21 4.1E-26 149.4 0.9 57 293-353 1-59 (60)
2 1wim_A KIAA0161 protein; ring 99.6 1.2E-15 4E-20 128.3 5.5 87 138-225 3-92 (94)
3 2ct7_A Ring finger protein 31; 99.2 1.7E-13 5.7E-18 112.9 -4.0 76 209-288 5-84 (86)
4 4ap4_A E3 ubiquitin ligase RNF 99.1 4E-12 1.4E-16 113.1 -0.1 117 138-311 5-126 (133)
5 2jmo_A Parkin; IBR, E3 ligase, 99.0 2.9E-12 1E-16 103.8 -5.7 68 205-276 2-75 (80)
6 3hcs_A TNF receptor-associated 98.7 5.2E-09 1.8E-13 97.3 2.8 83 137-244 15-97 (170)
7 2yu4_A E3 SUMO-protein ligase 98.5 5.6E-08 1.9E-12 81.1 4.3 57 138-199 5-63 (94)
8 2ecv_A Tripartite motif-contai 98.5 8.3E-08 2.8E-12 78.0 4.8 56 138-200 17-72 (85)
9 3hct_A TNF receptor-associated 98.5 1.5E-07 5.3E-12 81.9 6.4 83 137-244 15-97 (118)
10 2ecy_A TNF receptor-associated 98.5 1E-07 3.4E-12 73.9 4.7 51 138-200 13-63 (66)
11 2ecw_A Tripartite motif-contai 98.5 1.9E-07 6.6E-12 75.7 6.3 56 138-200 17-72 (85)
12 1rmd_A RAG1; V(D)J recombinati 98.5 1.1E-07 3.7E-12 82.5 5.0 80 140-243 23-102 (116)
13 2ct2_A Tripartite motif protei 98.5 1.1E-07 3.7E-12 78.0 4.7 60 138-205 13-74 (88)
14 3ztg_A E3 ubiquitin-protein li 98.5 1.1E-07 3.8E-12 78.8 4.4 49 138-197 11-60 (92)
15 1t1h_A Gspef-atpub14, armadill 98.4 1.1E-07 3.9E-12 76.1 3.8 65 138-214 6-71 (78)
16 2egp_A Tripartite motif-contai 98.4 3.6E-08 1.2E-12 79.2 0.7 57 138-200 10-66 (79)
17 2d8t_A Dactylidin, ring finger 98.4 1.5E-07 5E-12 74.2 4.1 55 137-204 12-66 (71)
18 1jm7_A BRCA1, breast cancer ty 98.4 2.1E-07 7.3E-12 79.9 5.2 69 140-218 21-90 (112)
19 2ysl_A Tripartite motif-contai 98.4 1.3E-07 4.5E-12 74.7 3.2 53 138-200 18-70 (73)
20 2ysj_A Tripartite motif-contai 98.4 3.6E-07 1.2E-11 70.0 5.3 45 138-190 18-62 (63)
21 3fl2_A E3 ubiquitin-protein li 98.3 1.9E-07 6.5E-12 82.0 3.3 49 139-199 51-99 (124)
22 2csy_A Zinc finger protein 183 98.3 5.6E-07 1.9E-11 72.7 5.9 48 138-198 13-60 (81)
23 2yur_A Retinoblastoma-binding 98.3 5.4E-07 1.8E-11 71.5 5.5 49 138-197 13-62 (74)
24 2djb_A Polycomb group ring fin 98.3 3.3E-07 1.1E-11 72.3 4.1 50 138-200 13-63 (72)
25 3lrq_A E3 ubiquitin-protein li 98.3 5.1E-07 1.8E-11 76.1 5.4 53 139-203 21-74 (100)
26 2y43_A E3 ubiquitin-protein li 98.3 2.8E-07 9.6E-12 77.5 3.7 49 139-200 21-70 (99)
27 2ecj_A Tripartite motif-contai 98.3 4.9E-07 1.7E-11 67.8 4.5 45 138-190 13-57 (58)
28 3knv_A TNF receptor-associated 98.3 1.3E-07 4.3E-12 85.1 1.1 84 138-243 29-118 (141)
29 1e4u_A Transcriptional repress 98.3 5.1E-07 1.8E-11 72.5 4.4 53 138-200 9-63 (78)
30 3ng2_A RNF4, snurf, ring finge 98.3 1.8E-07 6.2E-12 73.4 1.4 54 138-202 8-66 (71)
31 4ayc_A E3 ubiquitin-protein li 98.3 3.6E-07 1.2E-11 81.8 3.4 46 140-198 53-98 (138)
32 2kr4_A Ubiquitin conjugation f 98.3 4.7E-07 1.6E-11 74.0 3.8 50 138-200 12-61 (85)
33 3l11_A E3 ubiquitin-protein li 98.3 2.6E-07 8.8E-12 80.0 2.1 50 138-199 13-62 (115)
34 2ecm_A Ring finger and CHY zin 98.2 8.4E-07 2.9E-11 65.8 4.5 49 139-198 4-54 (55)
35 2ea6_A Ring finger protein 4; 98.2 7.1E-07 2.4E-11 69.4 4.1 50 138-198 13-67 (69)
36 2xeu_A Ring finger protein 4; 98.2 2.3E-07 8E-12 71.0 1.0 53 139-202 2-59 (64)
37 1g25_A CDK-activating kinase a 98.2 3.5E-07 1.2E-11 70.6 2.0 54 140-203 3-59 (65)
38 1z6u_A NP95-like ring finger p 98.2 5.8E-07 2E-11 81.6 3.3 49 140-200 78-126 (150)
39 2kiz_A E3 ubiquitin-protein li 98.2 2.4E-06 8.3E-11 66.5 5.9 51 138-199 12-63 (69)
40 2kre_A Ubiquitin conjugation f 98.2 5.7E-07 2E-11 75.8 2.4 49 138-199 27-75 (100)
41 2ckl_A Polycomb group ring fin 98.1 7.5E-07 2.6E-11 76.1 2.7 47 139-198 14-61 (108)
42 2c2l_A CHIP, carboxy terminus 98.1 1.6E-06 5.5E-11 86.5 5.0 51 138-200 206-256 (281)
43 1wgm_A Ubiquitin conjugation f 98.1 1.2E-06 4E-11 73.6 3.1 50 138-200 20-70 (98)
44 2ect_A Ring finger protein 126 98.1 3.1E-06 1E-10 67.7 4.9 52 138-200 13-65 (78)
45 3htk_C E3 SUMO-protein ligase 98.1 1.2E-06 4E-11 85.5 2.5 54 138-200 179-233 (267)
46 2ep4_A Ring finger protein 24; 98.0 4.9E-06 1.7E-10 65.7 5.5 50 138-198 13-63 (74)
47 1jm7_B BARD1, BRCA1-associated 98.0 8E-07 2.7E-11 77.1 0.9 46 139-199 21-67 (117)
48 1bor_A Transcription factor PM 98.0 1.2E-06 4.1E-11 65.6 1.6 44 139-198 5-48 (56)
49 2l0b_A E3 ubiquitin-protein li 98.0 3.3E-06 1.1E-10 69.8 3.9 51 138-199 38-89 (91)
50 1chc_A Equine herpes virus-1 r 98.0 4.2E-06 1.4E-10 64.9 4.0 48 139-198 4-51 (68)
51 1iym_A EL5; ring-H2 finger, ub 98.0 3E-06 1E-10 62.7 3.0 49 139-198 4-54 (55)
52 1x4j_A Ring finger protein 38; 98.0 4.8E-06 1.6E-10 66.0 3.8 51 138-199 21-72 (75)
53 1v87_A Deltex protein 2; ring- 97.9 9.3E-06 3.2E-10 69.9 4.6 53 140-198 25-93 (114)
54 2ckl_B Ubiquitin ligase protei 97.9 6.9E-06 2.4E-10 75.6 4.0 48 139-198 53-101 (165)
55 2f42_A STIP1 homology and U-bo 97.8 8.1E-06 2.8E-10 75.8 3.9 51 138-200 104-154 (179)
56 2ecn_A Ring finger protein 141 97.8 2.7E-06 9.1E-11 66.5 0.1 47 138-198 13-59 (70)
57 4ic3_A E3 ubiquitin-protein li 97.7 1.3E-05 4.3E-10 63.6 2.2 42 140-198 24-66 (74)
58 2ecg_A Baculoviral IAP repeat- 97.6 2.6E-05 9E-10 61.8 2.9 43 140-199 25-68 (75)
59 2vje_A E3 ubiquitin-protein li 97.4 6.3E-05 2.1E-09 57.7 2.9 48 138-198 6-56 (64)
60 4ap4_A E3 ubiquitin ligase RNF 97.4 3.4E-05 1.2E-09 67.7 1.7 55 137-202 69-128 (133)
61 2ecl_A Ring-box protein 2; RNF 97.4 0.00014 4.9E-09 58.4 5.2 50 139-199 14-76 (81)
62 2y1n_A E3 ubiquitin-protein li 97.4 0.00011 3.9E-09 76.0 4.8 48 140-199 332-379 (389)
63 2ea5_A Cell growth regulator w 97.3 0.0002 7E-09 55.5 4.9 45 138-199 13-58 (68)
64 2yho_A E3 ubiquitin-protein li 97.3 5.9E-05 2E-09 60.5 1.6 43 140-199 18-61 (79)
65 2vje_B MDM4 protein; proto-onc 97.3 0.00011 3.7E-09 56.2 3.0 47 139-198 6-55 (63)
66 2ct7_A Ring finger protein 31; 97.3 8.1E-05 2.8E-09 60.7 2.0 48 299-352 26-74 (86)
67 3dpl_R Ring-box protein 1; ubi 97.2 0.00031 1.1E-08 59.6 4.4 50 138-198 35-100 (106)
68 2d8s_A Cellular modulator of i 97.1 0.00084 2.9E-08 53.8 5.8 53 138-199 13-70 (80)
69 3t6p_A Baculoviral IAP repeat- 96.8 0.00035 1.2E-08 71.7 1.6 42 140-198 295-337 (345)
70 2jmo_A Parkin; IBR, E3 ligase, 96.8 0.0006 2E-08 54.7 2.6 40 298-337 25-70 (80)
71 1wd2_A Ariadne-1 protein homol 96.7 0.00064 2.2E-08 51.3 2.5 39 227-269 4-45 (60)
72 4a0k_B E3 ubiquitin-protein li 96.4 0.00051 1.8E-08 59.2 0.0 49 139-198 47-111 (117)
73 2bay_A PRE-mRNA splicing facto 96.4 0.002 6.7E-08 48.8 3.2 48 140-200 3-51 (61)
74 3k1l_B Fancl; UBC, ring, RWD, 95.9 0.01 3.6E-07 59.8 6.4 61 138-200 306-374 (381)
75 2ct0_A Non-SMC element 1 homol 94.9 0.019 6.6E-07 45.0 3.5 50 139-198 14-63 (74)
76 1v92_A NSFL1 cofactor P47; 3-h 94.3 0.076 2.6E-06 37.3 5.2 41 78-118 5-45 (46)
77 2dal_A Protein KIAA0794; FAS a 92.8 0.19 6.5E-06 37.8 5.5 42 77-118 14-55 (62)
78 2jun_A Midline-1; B-BOX, TRIM, 92.7 0.052 1.8E-06 45.0 2.5 34 139-173 2-37 (101)
79 3vk6_A E3 ubiquitin-protein li 92.7 0.082 2.8E-06 43.5 3.5 46 142-198 3-48 (101)
80 2jun_A Midline-1; B-BOX, TRIM, 91.9 0.014 5E-07 48.4 -2.0 69 250-333 17-87 (101)
81 1vyx_A ORF K3, K3RING; zinc-bi 90.7 0.3 1E-05 36.4 4.5 49 139-198 5-58 (60)
82 2dam_A ETEA protein; KIAA0887, 89.9 0.47 1.6E-05 36.3 5.0 41 78-118 18-59 (67)
83 2cs3_A Protein C14ORF4, MY039 89.7 0.6 2E-05 36.5 5.5 51 136-190 11-63 (93)
84 2dzl_A Protein FAM100B; UBA-li 88.7 0.67 2.3E-05 35.3 5.1 39 80-118 19-57 (66)
85 1wj7_A Hypothetical protein (R 87.0 0.94 3.2E-05 37.5 5.4 42 77-118 38-79 (104)
86 1g25_A CDK-activating kinase a 86.7 0.3 1E-05 36.6 2.1 33 254-311 24-56 (65)
87 3vk6_A E3 ubiquitin-protein li 86.3 0.5 1.7E-05 38.8 3.3 49 231-313 3-52 (101)
88 4ayc_A E3 ubiquitin-protein li 86.0 0.28 9.5E-06 43.0 1.9 28 231-267 55-82 (138)
89 2di0_A Activating signal coint 85.9 1.6 5.5E-05 33.5 5.8 41 77-117 12-53 (71)
90 3lrq_A E3 ubiquitin-protein li 85.2 0.19 6.5E-06 41.5 0.3 35 299-339 23-57 (100)
91 3ng2_A RNF4, snurf, ring finge 85.1 0.53 1.8E-05 35.6 2.9 54 229-310 10-63 (71)
92 3e21_A HFAF1, FAS-associated f 84.0 1.2 4.1E-05 31.1 3.9 38 78-115 5-43 (45)
93 2ea6_A Ring finger protein 4; 83.8 0.72 2.4E-05 34.6 3.1 53 229-309 15-67 (69)
94 2ckl_B Ubiquitin ligase protei 83.7 0.72 2.5E-05 41.6 3.6 46 230-309 55-101 (165)
95 2xeu_A Ring finger protein 4; 83.0 0.52 1.8E-05 34.8 2.0 52 231-310 5-56 (64)
96 1x4j_A Ring finger protein 38; 82.4 0.79 2.7E-05 35.3 2.8 51 230-313 24-75 (75)
97 2ct2_A Tripartite motif protei 82.0 1.3 4.6E-05 34.9 4.2 54 229-310 15-68 (88)
98 3fl2_A E3 ubiquitin-protein li 82.0 0.95 3.2E-05 38.7 3.5 46 230-309 53-98 (124)
99 2ecm_A Ring finger and CHY zin 81.8 2.1 7.2E-05 30.3 4.8 48 230-309 6-54 (55)
100 2jrp_A Putative cytoplasmic pr 81.3 0.52 1.8E-05 37.3 1.4 50 299-351 3-57 (81)
101 1z96_A DNA-damage, UBA-domain 80.9 2.8 9.6E-05 27.9 4.9 34 79-113 5-38 (40)
102 2ysj_A Tripartite motif-contai 80.8 0.39 1.3E-05 35.6 0.5 33 299-338 21-53 (63)
103 1bor_A Transcription factor PM 80.0 1 3.5E-05 32.6 2.6 27 255-310 23-49 (56)
104 2jne_A Hypothetical protein YF 79.9 0.48 1.6E-05 38.5 0.8 50 299-351 33-87 (101)
105 2ep4_A Ring finger protein 24; 79.0 1.8 6E-05 33.1 3.8 49 229-309 15-63 (74)
106 1iym_A EL5; ring-H2 finger, ub 78.8 1.4 4.8E-05 31.4 3.0 33 230-268 6-39 (55)
107 2ect_A Ring finger protein 126 77.5 1.3 4.6E-05 34.2 2.7 49 229-309 15-63 (78)
108 2djb_A Polycomb group ring fin 77.4 0.61 2.1E-05 35.6 0.7 34 299-338 16-49 (72)
109 2ecw_A Tripartite motif-contai 77.3 0.7 2.4E-05 36.2 1.0 33 299-338 20-52 (85)
110 2ysl_A Tripartite motif-contai 76.8 0.85 2.9E-05 34.7 1.3 32 299-337 21-52 (73)
111 2kiz_A E3 ubiquitin-protein li 76.3 2.1 7.2E-05 32.1 3.5 48 229-309 14-62 (69)
112 1z6u_A NP95-like ring finger p 75.8 1.8 6.3E-05 38.4 3.5 27 230-265 79-105 (150)
113 3hct_A TNF receptor-associated 75.1 1.9 6.6E-05 36.4 3.3 28 229-265 18-45 (118)
114 3nw0_A Non-structural maintena 74.7 1.6 5.5E-05 42.0 3.0 51 139-199 179-229 (238)
115 2ckl_A Polycomb group ring fin 74.6 0.71 2.4E-05 38.4 0.3 35 299-339 16-50 (108)
116 2egp_A Tripartite motif-contai 74.2 1.4 4.7E-05 34.0 2.0 33 299-338 13-45 (79)
117 1jm7_A BRCA1, breast cancer ty 74.2 0.96 3.3E-05 37.6 1.1 34 299-339 22-55 (112)
118 1e4u_A Transcriptional repress 73.8 1.1 3.8E-05 35.1 1.3 35 299-336 12-46 (78)
119 2y1n_A E3 ubiquitin-protein li 73.6 3.4 0.00011 42.6 5.2 50 227-310 330-379 (389)
120 2yur_A Retinoblastoma-binding 73.2 0.86 3E-05 35.1 0.5 35 299-339 16-50 (74)
121 1pft_A TFIIB, PFTFIIBN; N-term 72.8 2.3 7.8E-05 30.2 2.7 29 298-327 5-34 (50)
122 2y43_A E3 ubiquitin-protein li 72.3 0.86 2.9E-05 37.2 0.3 35 299-339 23-57 (99)
123 2ecy_A TNF receptor-associated 72.0 0.98 3.3E-05 33.8 0.6 32 299-337 16-47 (66)
124 3l11_A E3 ubiquitin-protein li 71.5 1.7 5.9E-05 36.4 2.1 34 299-339 16-49 (115)
125 1rmd_A RAG1; V(D)J recombinati 71.5 2.8 9.6E-05 35.1 3.4 47 230-310 24-70 (116)
126 1t1h_A Gspef-atpub14, armadill 71.4 1 3.6E-05 34.8 0.6 33 299-338 9-41 (78)
127 1deq_A Fibrinogen (alpha chain 71.3 24 0.00083 35.7 10.6 25 456-480 109-133 (390)
128 2ecj_A Tripartite motif-contai 70.7 1.1 3.8E-05 32.3 0.6 32 299-337 16-47 (58)
129 2ecv_A Tripartite motif-contai 70.6 0.71 2.4E-05 36.1 -0.5 33 299-338 20-52 (85)
130 1fre_A Nuclear factor XNF7; zi 70.0 2.6 8.9E-05 28.4 2.4 27 299-333 4-30 (42)
131 1vq8_Z 50S ribosomal protein L 69.9 1.2 4.2E-05 35.4 0.7 36 298-337 27-62 (83)
132 1jm7_B BARD1, BRCA1-associated 69.8 2 7E-05 36.2 2.2 33 299-337 23-55 (117)
133 2l0b_A E3 ubiquitin-protein li 69.7 1.2 4E-05 35.9 0.6 49 229-309 40-88 (91)
134 2did_A Tripartite motif protei 69.6 1.8 6.1E-05 31.0 1.5 27 299-333 9-35 (53)
135 2jr6_A UPF0434 protein NMA0874 69.1 2 6.7E-05 32.9 1.7 28 299-327 9-36 (68)
136 3ddt_A E3 ubiquitin-protein li 68.8 1.7 5.7E-05 30.4 1.2 26 299-332 7-33 (48)
137 2k4x_A 30S ribosomal protein S 68.8 1.3 4.4E-05 32.4 0.6 29 298-327 18-46 (55)
138 3hcs_A TNF receptor-associated 68.8 3.1 0.0001 37.5 3.3 31 229-268 18-48 (170)
139 1chc_A Equine herpes virus-1 r 68.0 1.3 4.4E-05 33.2 0.5 34 299-338 6-39 (68)
140 4ic3_A E3 ubiquitin-protein li 67.4 3 0.0001 32.0 2.5 26 255-310 41-67 (74)
141 1ify_A HHR23A, UV excision rep 67.0 11 0.00037 26.5 5.2 37 79-116 9-45 (49)
142 2d8v_A Zinc finger FYVE domain 67.0 3.2 0.00011 31.2 2.4 33 138-173 6-39 (67)
143 2d8t_A Dactylidin, ring finger 66.8 1.4 4.7E-05 33.5 0.4 34 299-339 16-49 (71)
144 1vg5_A RSGI RUH-014, rhomboid 66.0 7.1 0.00024 30.2 4.3 37 80-117 31-67 (73)
145 3j20_Y 30S ribosomal protein S 65.7 2.4 8.1E-05 30.3 1.4 28 298-326 19-46 (50)
146 2d8u_A Ubiquitin ligase TRIM63 65.6 2.5 8.5E-05 31.4 1.6 27 299-333 9-36 (64)
147 2csy_A Zinc finger protein 183 65.2 1.4 4.9E-05 34.4 0.2 33 299-338 16-48 (81)
148 2yrg_A Tripartite motif-contai 64.7 2.5 8.5E-05 31.1 1.5 27 299-333 15-41 (59)
149 2g3q_A Protein YBL047C; endocy 64.6 11 0.00037 25.6 4.7 36 80-116 6-41 (43)
150 1oai_A Nuclear RNA export fact 63.9 24 0.00082 25.9 6.7 38 77-114 6-43 (59)
151 1v87_A Deltex protein 2; ring- 62.8 2.7 9.4E-05 35.0 1.6 36 255-311 60-95 (114)
152 3ztg_A E3 ubiquitin-protein li 62.5 1.4 4.7E-05 35.3 -0.4 33 299-337 14-46 (92)
153 2csv_A Tripartite motif protei 61.7 2.7 9.2E-05 32.2 1.2 31 299-339 19-49 (72)
154 3knv_A TNF receptor-associated 61.5 1.8 6.2E-05 38.0 0.2 32 299-337 32-63 (141)
155 3bq3_A Defective in cullin ned 60.5 6.7 0.00023 38.3 4.1 43 77-119 14-56 (270)
156 2ecn_A Ring finger protein 141 59.4 1.9 6.7E-05 32.4 0.0 31 299-337 16-46 (70)
157 1veg_A NEDD8 ultimate buster-1 58.7 11 0.00037 29.9 4.3 36 81-117 32-67 (83)
158 2c2l_A CHIP, carboxy terminus 58.3 7.7 0.00026 37.4 4.2 28 229-265 208-235 (281)
159 2yvr_A Transcription intermedi 56.6 3.5 0.00012 28.9 1.0 31 299-339 7-38 (50)
160 2egm_A Tripartite motif-contai 55.9 2.8 9.5E-05 30.6 0.4 27 299-333 19-45 (57)
161 2dak_A Ubiquitin carboxyl-term 54.2 17 0.00059 26.9 4.6 37 80-117 11-47 (63)
162 2yw8_A RUN and FYVE domain-con 53.8 4.1 0.00014 32.1 1.1 41 291-334 11-52 (82)
163 2jp7_A MRNA export factor MEX6 52.5 31 0.001 25.2 5.5 41 76-116 4-44 (57)
164 2dja_A Midline-2; tripartite m 51.2 5.4 0.00019 31.3 1.4 27 299-333 19-46 (84)
165 2a20_A Regulating synaptic mem 51.1 6.8 0.00023 28.7 1.7 38 299-339 10-47 (62)
166 1wr1_B Ubiquitin-like protein 51.1 30 0.001 25.3 5.3 43 76-118 15-57 (58)
167 1wfh_A Zinc finger (AN1-like) 50.5 6.3 0.00022 29.5 1.5 28 298-331 15-42 (64)
168 2knz_A Ubiquilin-4; cytoplasm, 49.5 33 0.0011 24.4 5.3 41 76-117 9-50 (53)
169 2hf1_A Tetraacyldisaccharide-1 48.7 7.5 0.00026 29.6 1.8 28 299-327 9-36 (68)
170 3qt1_I DNA-directed RNA polyme 48.7 8.8 0.0003 33.3 2.4 30 297-327 23-56 (133)
171 3h0g_I DNA-directed RNA polyme 48.6 9.7 0.00033 32.0 2.7 29 298-327 4-36 (113)
172 2jy5_A Ubiquilin-1; UBA, alter 48.6 30 0.001 24.5 4.9 39 79-118 13-52 (52)
173 2js4_A UPF0434 protein BB2007; 48.3 8.1 0.00028 29.6 1.9 28 299-327 9-36 (70)
174 3t6p_A Baculoviral IAP repeat- 47.8 11 0.00039 38.1 3.5 26 255-310 312-338 (345)
175 1wfl_A Zinc finger protein 216 47.8 6.4 0.00022 30.4 1.2 26 299-330 26-51 (74)
176 1wg2_A Zinc finger (AN1-like) 47.6 6.9 0.00024 29.3 1.3 28 298-331 15-42 (64)
177 2pk7_A Uncharacterized protein 46.6 9 0.00031 29.2 1.9 28 299-327 9-36 (69)
178 1weo_A Cellulose synthase, cat 46.1 30 0.001 27.6 4.9 58 230-315 17-75 (93)
179 3ghg_A Fibrinogen alpha chain; 46.1 2E+02 0.0068 30.4 12.4 28 456-484 131-158 (562)
180 1wiv_A UBP14, ubiquitin-specif 45.1 30 0.001 26.5 4.7 37 81-118 32-68 (73)
181 3bvo_A CO-chaperone protein HS 44.8 1.9E+02 0.0065 26.6 15.6 15 509-523 191-205 (207)
182 1joc_A EEA1, early endosomal a 44.2 10 0.00035 32.5 2.1 40 292-334 62-102 (125)
183 1wji_A Tudor domain containing 44.1 22 0.00076 26.4 3.7 36 80-116 11-46 (63)
184 2ecl_A Ring-box protein 2; RNF 43.0 6.4 0.00022 30.7 0.6 18 322-339 47-64 (81)
185 3ghg_A Fibrinogen alpha chain; 42.6 1.5E+02 0.005 31.4 10.7 16 493-508 140-155 (562)
186 1y02_A CARP2, FYVE-ring finger 42.2 8.5 0.00029 32.8 1.3 33 299-334 20-52 (120)
187 2bwb_A Ubiquitin-like protein 41.7 58 0.002 22.4 5.3 40 76-116 5-45 (46)
188 2yu4_A E3 SUMO-protein ligase 41.5 4.2 0.00014 32.8 -0.7 33 299-337 8-40 (94)
189 2ko5_A Ring finger protein Z; 41.4 9.7 0.00033 30.8 1.4 48 138-200 26-74 (99)
190 1deq_A Fibrinogen (alpha chain 41.0 2.6E+02 0.0088 28.3 11.9 34 431-468 158-191 (390)
191 2jny_A Uncharacterized BCR; st 40.7 12 0.00041 28.4 1.8 28 299-327 11-38 (67)
192 1dvp_A HRS, hepatocyte growth 40.1 9.6 0.00033 35.9 1.5 33 299-334 162-194 (220)
193 4a0k_B E3 ubiquitin-protein li 39.4 6.2 0.00021 33.4 0.0 25 312-338 75-99 (117)
194 1odh_A MGCM1; transcription fa 39.3 24 0.00081 31.3 3.7 35 269-324 96-130 (174)
195 3t7l_A Zinc finger FYVE domain 38.3 16 0.00054 29.3 2.2 35 298-335 20-54 (90)
196 2dah_A Ubiquilin-3; UBA domain 38.2 36 0.0012 24.4 3.9 38 79-117 10-48 (54)
197 2dkl_A Trinucleotide repeat co 37.3 49 0.0017 26.2 5.0 39 79-118 22-60 (85)
198 1twf_I B12.6, DNA-directed RNA 36.9 11 0.00039 32.0 1.3 29 298-327 4-36 (122)
199 1wff_A Riken cDNA 2810002D23 p 36.2 13 0.00046 29.4 1.4 29 298-331 25-53 (85)
200 1wfk_A Zinc finger, FYVE domai 36.0 12 0.00042 29.8 1.3 33 299-334 10-42 (88)
201 1x4u_A Zinc finger, FYVE domai 35.9 15 0.0005 29.0 1.7 33 298-333 14-46 (84)
202 1vej_A Riken cDNA 4931431F19; 35.6 59 0.002 25.0 5.0 39 79-117 30-68 (74)
203 3m7n_A Putative uncharacterize 35.5 17 0.00058 33.0 2.3 24 299-325 141-164 (179)
204 2akl_A PHNA-like protein PA012 35.5 15 0.00052 31.4 1.7 29 297-327 26-54 (138)
205 3h0g_I DNA-directed RNA polyme 35.0 23 0.0008 29.6 2.9 31 228-260 3-36 (113)
206 3t7l_A Zinc finger FYVE domain 34.6 31 0.0011 27.5 3.5 37 136-172 16-54 (90)
207 1wfp_A Zinc finger (AN1-like) 34.3 13 0.00043 28.7 1.0 27 298-330 25-51 (74)
208 2jrp_A Putative cytoplasmic pr 34.2 12 0.00041 29.5 0.8 29 299-336 32-62 (81)
209 1z60_A TFIIH basal transcripti 34.2 14 0.00048 27.2 1.2 36 230-272 16-52 (59)
210 1vfy_A Phosphatidylinositol-3- 34.0 17 0.00057 27.8 1.7 32 299-333 12-43 (73)
211 2cpw_A CBL-interacting protein 33.9 55 0.0019 24.3 4.5 36 81-117 22-58 (64)
212 2dai_A Ubadc1, ubiquitin assoc 33.8 60 0.002 25.5 4.9 36 81-117 32-67 (83)
213 1twf_L ABC10-alpha, DNA-direct 33.3 17 0.00059 27.7 1.6 26 299-326 29-54 (70)
214 1f5n_A Interferon-induced guan 32.8 2.4E+02 0.0081 30.6 11.2 71 453-528 512-582 (592)
215 1x4w_A Hypothetical protein FL 32.0 16 0.00055 27.6 1.2 30 298-330 15-44 (67)
216 1dl6_A Transcription factor II 31.6 27 0.00092 25.5 2.4 25 299-324 12-37 (58)
217 2f42_A STIP1 homology and U-bo 30.9 32 0.0011 31.3 3.3 30 227-265 104-133 (179)
218 1dv0_A DNA repair protein HHR2 30.2 22 0.00075 24.7 1.6 37 80-117 6-42 (47)
219 4esj_A Type-2 restriction enzy 29.9 38 0.0013 32.1 3.6 59 197-263 8-69 (257)
220 1m1j_A Fibrinogen alpha subuni 29.8 3.7E+02 0.013 27.9 11.2 96 391-528 52-147 (491)
221 2xzf_A Formamidopyrimidine-DNA 29.6 19 0.00064 35.1 1.6 25 299-324 243-269 (271)
222 3htk_C E3 SUMO-protein ligase 29.4 16 0.00055 35.4 1.0 33 299-337 182-214 (267)
223 3zyq_A Hepatocyte growth facto 29.1 18 0.00061 34.2 1.3 33 299-334 165-197 (226)
224 1ee8_A MUTM (FPG) protein; bet 29.1 22 0.00075 34.6 2.0 25 299-324 236-262 (266)
225 3qt1_I DNA-directed RNA polyme 29.0 31 0.0011 29.8 2.8 32 227-260 22-56 (133)
226 1twf_I B12.6, DNA-directed RNA 28.4 23 0.00078 30.1 1.7 31 228-260 3-36 (122)
227 3dpl_R Ring-box protein 1; ubi 28.3 12 0.00039 31.1 -0.2 17 322-338 72-88 (106)
228 4akv_A Sorting nexin-33; trans 28.2 3.6E+02 0.012 27.2 11.2 60 461-525 324-383 (386)
229 1k82_A Formamidopyrimidine-DNA 27.9 21 0.00072 34.7 1.6 25 299-324 241-267 (268)
230 3u6p_A Formamidopyrimidine-DNA 27.7 21 0.00071 34.9 1.5 25 299-324 246-272 (273)
231 1z2q_A LM5-1; membrane protein 27.0 56 0.0019 25.5 3.7 38 135-172 16-55 (84)
232 1k3x_A Endonuclease VIII; hydr 27.0 22 0.00076 34.4 1.6 25 299-324 235-261 (262)
233 3a1b_A DNA (cytosine-5)-methyl 26.8 34 0.0012 30.5 2.6 35 138-175 77-114 (159)
234 3u5c_f 40S ribosomal protein S 26.5 27 0.00093 30.8 1.9 34 228-263 117-151 (152)
235 3ljc_A ATP-dependent protease 26.2 81 0.0028 29.9 5.5 71 447-525 180-251 (252)
236 1weo_A Cellulose synthase, cat 26.0 1.1E+02 0.0039 24.3 5.2 50 138-197 14-68 (93)
237 3v2d_5 50S ribosomal protein L 25.2 29 0.00098 25.6 1.5 21 298-324 30-50 (60)
238 3lqh_A Histone-lysine N-methyl 25.1 25 0.00085 32.2 1.5 73 141-216 3-82 (183)
239 3k9o_A Ubiquitin-conjugating e 25.1 83 0.0028 28.9 5.1 37 79-116 164-200 (201)
240 3h0g_L DNA-directed RNA polyme 25.1 35 0.0012 25.4 2.0 27 299-327 22-48 (63)
241 1wii_A Hypothetical UPF0222 pr 25.0 23 0.0008 28.1 1.1 28 299-327 24-57 (85)
242 2yw8_A RUN and FYVE domain-con 24.9 47 0.0016 25.9 2.9 34 227-266 17-51 (82)
243 1x4v_A Hypothetical protein LO 24.1 38 0.0013 25.2 2.0 31 229-266 12-43 (63)
244 2lbm_A Transcriptional regulat 23.9 1.3E+02 0.0045 26.1 5.8 50 138-196 61-117 (142)
245 3mjh_B Early endosome antigen 23.7 23 0.00078 23.0 0.6 14 138-151 3-16 (34)
246 2lli_A Protein AIR2; RNA surve 23.2 60 0.002 27.3 3.5 53 259-334 5-73 (124)
247 1joc_A EEA1, early endosomal a 23.0 41 0.0014 28.6 2.4 36 137-172 66-103 (125)
248 2zjr_Z 50S ribosomal protein L 23.0 34 0.0012 25.2 1.6 22 298-325 30-51 (60)
249 3mpx_A FYVE, rhogef and PH dom 22.9 18 0.0006 37.5 0.0 40 292-334 368-408 (434)
250 3u5c_f 40S ribosomal protein S 22.9 32 0.0011 30.4 1.7 30 299-329 119-150 (152)
251 2ekk_A UBA domain from E3 ubiq 22.8 1.2E+02 0.0042 20.6 4.5 35 81-117 12-46 (47)
252 2zet_C Melanophilin; complex, 22.8 77 0.0026 28.0 4.2 35 297-333 67-101 (153)
253 2yre_A F-box only protein 30; 22.6 14 0.00048 30.2 -0.6 40 161-201 13-52 (100)
254 2dag_A Ubiquitin carboxyl-term 22.5 92 0.0031 23.8 4.0 37 80-117 11-48 (74)
255 3e46_A Ubiquitin-conjugating e 22.5 1E+02 0.0035 29.5 5.3 37 79-116 216-252 (253)
256 1gs9_A Apolipoprotein E, APOE4 22.4 4E+02 0.014 23.5 10.1 60 461-522 100-159 (165)
257 3j21_g 50S ribosomal protein L 22.4 32 0.0011 24.5 1.3 24 298-326 14-37 (51)
258 2xzm_9 RPS31E; ribosome, trans 22.3 32 0.0011 31.6 1.6 28 299-328 114-142 (189)
259 3rpj_A Curlin genes transcript 22.3 42 0.0014 28.7 2.2 59 436-494 69-128 (134)
260 4esj_A Type-2 restriction enzy 21.8 58 0.002 30.9 3.2 21 289-310 26-47 (257)
261 2cwb_A Chimera of immunoglobul 21.5 1.1E+02 0.0038 25.3 4.6 40 79-118 67-106 (108)
262 1y02_A CARP2, FYVE-ring finger 20.5 44 0.0015 28.3 2.0 38 136-173 15-54 (120)
263 1nfn_A Apolipoprotein E3; lipi 20.5 2.5E+02 0.0087 25.4 7.4 30 493-522 130-159 (191)
264 2kre_A Ubiquitin conjugation f 20.3 20 0.0007 29.1 -0.1 32 299-337 30-61 (100)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.82 E-value=1.2e-21 Score=149.37 Aligned_cols=57 Identities=60% Similarity=1.448 Sum_probs=53.3
Q ss_pred HHHhcCcCCCCCCcceeecCCCCccccCCC--CccchhhccccccccCCCCCCCcccCCcchh
Q 008382 293 WILANSKPCPKCKRPIEKNQGCMHMTCSPP--CKFEFCWLCLGAWSDHGERTGGFYACNRYET 353 (567)
Q Consensus 293 wi~~ntk~CPkC~~~IEK~~GCnhm~C~~~--C~~~FCw~C~~~~~~H~~~~g~~y~C~~~~~ 353 (567)
||.+++|+||+|+.+|||++|||||+|+ . |+++|||+|+++|..|+. .+|+||+|++
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~-~~~C~~~FCw~C~~~~~~~~~---~~y~C~~y~~ 59 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCR-NQNCKAEFCWVCLGPWEPHGS---AWYNCNRYNE 59 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCC-SSGGGSCCSSSSCSCSGGGGT---SSSSSCSCCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEEC-CCCcCCEEeeCcCCCcccCCC---ccccCCCccc
Confidence 7888999999999999999999999998 7 999999999999999985 6899999963
No 2
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.58 E-value=1.2e-15 Score=128.33 Aligned_cols=87 Identities=18% Similarity=0.558 Sum_probs=76.0
Q ss_pred CCcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCc--cchhHHHhhcChHHHHHH
Q 008382 138 ARELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAA--VGQDMIDMLASDEDKKKY 214 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~--v~~~~i~~ll~~e~~~ky 214 (567)
...++|+||++.++...++.+ +|||.||.+||..||..+|.+|. ...++||.++|+.. +++..++++++++++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~-~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGL-ETAISCPDAACPKQGHLQENEIECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCS-CCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCC-cccccCccccCCCCCccCHHHHHHHCCHHHHHHH
Confidence 347899999999876666665 69999999999999999998764 24799999999999 999999999999999999
Q ss_pred HHHHHHHHHhc
Q 008382 215 SRYLLRSYVED 225 (567)
Q Consensus 215 ~~~~~~~~v~~ 225 (567)
.+++++.++++
T Consensus 82 ~~~~~~~~v~~ 92 (94)
T 1wim_A 82 KKLQFERSGPS 92 (94)
T ss_dssp HHHHHHSSCSS
T ss_pred HHHHHHhhhcc
Confidence 99999887754
No 3
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=99.23 E-value=1.7e-13 Score=112.93 Aligned_cols=76 Identities=21% Similarity=0.569 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcccCCCCCCCCceecccCCCCceeee-cCCccccccccccC---CCCCCchhHHHHHHHh
Q 008382 209 EDKKKYSRYLLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEA---HRPVDCGTVAKWILKN 284 (567)
Q Consensus 209 e~~~ky~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~---H~p~~C~~~~~~~~~~ 284 (567)
+++++|.+++++.+|..+++++||| +|+.++.... ....|+| .|++.||+.|+.+| |.|.+|..+++|..++
T Consensus 5 ~~~e~y~~~l~e~~v~~~~~~~wCP--~C~~~~~~~~--~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~~~n 80 (86)
T 2ct7_A 5 SSGALFHKKLTEGVLMRDPKFLWCA--QCSFGFIYER--EQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMN 80 (86)
T ss_dssp CCCCSSSSCCCCSCCCSCCCEECCS--SSCCCEECCC--SCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCEeECc--CCCchheecC--CCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHHHhC
Confidence 4567788888888998899999999 7999887643 3567999 79999999999999 9999999999999987
Q ss_pred hhhH
Q 008382 285 CAES 288 (567)
Q Consensus 285 ~~~~ 288 (567)
..++
T Consensus 81 ~~~~ 84 (86)
T 2ct7_A 81 SGPS 84 (86)
T ss_dssp TCSS
T ss_pred cccc
Confidence 6654
No 4
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.14 E-value=4e-12 Score=113.08 Aligned_cols=117 Identities=29% Similarity=0.680 Sum_probs=80.1
Q ss_pred CCccccccccccccc-----CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHhhcChHHHH
Q 008382 138 ARELTCGICFDTYSC-----DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKK 212 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ 212 (567)
.+.+.|+||++.+.. ..++.++|||.||..||..|+.. ...|| .|+..+....+..+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l~i----- 68 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPIYI----- 68 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEECBC-----
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccccc-----
Confidence 357899999998732 12388999999999999999853 24899 5998887654433211
Q ss_pred HHHHHHHHHHHhcCCCcccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHH
Q 008382 213 KYSRYLLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMN 292 (567)
Q Consensus 213 ky~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~ 292 (567)
+.....||- |...+......+...+...|||.||+.|... |+.
T Consensus 69 -------------~~~~~~C~i--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~------------~~~---------- 111 (133)
T 4ap4_A 69 -------------GSGTVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLRD------------SLK---------- 111 (133)
T ss_dssp -------------SSSSCBCTT--TCCBHHHHHHTTCCEEEETTSBEEEHHHHHH------------HHH----------
T ss_pred -------------CCCCCCCCC--CCCccccccccCcceEeCCCCChhhHHHHHH------------HHH----------
Confidence 234567887 8765543211223335569999999999643 322
Q ss_pred HHHhcCcCCCCCCcceeec
Q 008382 293 WILANSKPCPKCKRPIEKN 311 (567)
Q Consensus 293 wi~~ntk~CPkC~~~IEK~ 311 (567)
+.+.||.|+..|.++
T Consensus 112 ----~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 112 ----NANTCPTCRKKINHK 126 (133)
T ss_dssp ----HCSBCTTTCCBCCGG
T ss_pred ----cCCCCCCCCCcCChh
Confidence 127999999998854
No 5
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=99.02 E-value=2.9e-12 Score=103.83 Aligned_cols=68 Identities=26% Similarity=0.624 Sum_probs=58.7
Q ss_pred hcChHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCceecccCCCCceeee------cCCccccccccccCCCCCCchh
Q 008382 205 LASDEDKKKYSRYLLRSYVEDNRKTKWCPAPGCEHAIDFAAGSGNFDVSC------LCSYNFCWNCTEEAHRPVDCGT 276 (567)
Q Consensus 205 ll~~e~~~ky~~~~~~~~v~~~~~~~~CP~~~C~~~i~~~~~~~~~~v~C------~C~~~fC~~C~~~~H~p~~C~~ 276 (567)
+++++++++|.+++++.+|..+. .+|||+|+|+.+|.... ....|.| .|++.||+.|+.+||. .+|..
T Consensus 2 ~l~~~~~~rY~~~~~e~~v~~~~-~~~CP~p~C~~~v~~~~--~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 2 HMGEEQYNRYQQYGAEECVLQMG-GVLCPRPGCGAGLLPEP--DQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCCSCCCSSSCCSSCCCS-SCCCCSSSCCCCCCCCS--CTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC-cEECCCCCCCcccEECC--CCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 45667788999999999998886 99999999999998753 4567899 6999999999999999 99975
No 6
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.68 E-value=5.2e-09 Score=97.33 Aligned_cols=83 Identities=25% Similarity=0.536 Sum_probs=58.8
Q ss_pred CCCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHhhcChHHHHHHHH
Q 008382 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSR 216 (567)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~ 216 (567)
....+.|+||++.+ .+++.++|||.||..||..++... ...|| .|+..+....+ .....+.
T Consensus 15 ~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~~~---- 75 (170)
T 3hcs_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFAK---- 75 (170)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHHH----
T ss_pred CCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC--------CCCCC--CCccCcchhhh---hhhHHHH----
Confidence 34578999999987 678889999999999999998653 23899 58888876432 2221111
Q ss_pred HHHHHHHhcCCCcccCCCCCCCCceecc
Q 008382 217 YLLRSYVEDNRKTKWCPAPGCEHAIDFA 244 (567)
Q Consensus 217 ~~~~~~v~~~~~~~~CP~~~C~~~i~~~ 244 (567)
..+. .-.+.||+.+|+..+...
T Consensus 76 ----~~i~--~l~v~C~n~GC~~~~~~~ 97 (170)
T 3hcs_A 76 ----REIL--SLMVKCPNEGCLHKMELR 97 (170)
T ss_dssp ----HHHH--TSEEECCSTTCCCEEEGG
T ss_pred ----HHHh--hcccCCCCCCCCceecHh
Confidence 1111 235789999999877653
No 7
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=5.6e-08 Score=81.14 Aligned_cols=57 Identities=21% Similarity=0.428 Sum_probs=45.5
Q ss_pred CCcccccccccccccCCeeecC-CCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCc-cch
Q 008382 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAA-VGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~-v~~ 199 (567)
...+.|+||++.+ .+|+.++ |||.||+.|+..||...-..+ ....||..+|... +..
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~~~~---~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQKRK---KKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHHTTT---CCBCCCSTTCCCCCBCG
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHccCcC---CCCCCCcCcCcccccCH
Confidence 3478999999988 7899996 999999999999997642112 1578998889876 553
No 8
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=8.3e-08 Score=77.97 Aligned_cols=56 Identities=30% Similarity=0.708 Sum_probs=45.9
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+......+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecv_A 17 KEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSMLDKG---ESSCP--VCRISYQPE 72 (85)
T ss_dssp CCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHHTTS---CCCCT--TTCCSSCSS
T ss_pred cCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhcCCC---CCcCC--CCCCccCHH
Confidence 4578999999987 66788899999999999999988665443 68999 598887653
No 9
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.49 E-value=1.5e-07 Score=81.87 Aligned_cols=83 Identities=24% Similarity=0.534 Sum_probs=59.2
Q ss_pred CCCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHhhcChHHHHHHHH
Q 008382 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSR 216 (567)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~ 216 (567)
....+.|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+ .....+
T Consensus 15 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~---~~~~~l----- 74 (118)
T 3hct_A 15 LESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA--------GHKCP--VDNEILLENQL---FPDNFA----- 74 (118)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH--------CSBCT--TTCCBCCGGGC---EECHHH-----
T ss_pred CCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC--------CCCCC--CCCCCcCHHhc---ccCHHH-----
Confidence 34578999999987 678889999999999999998653 23899 59888876432 222211
Q ss_pred HHHHHHHhcCCCcccCCCCCCCCceecc
Q 008382 217 YLLRSYVEDNRKTKWCPAPGCEHAIDFA 244 (567)
Q Consensus 217 ~~~~~~v~~~~~~~~CP~~~C~~~i~~~ 244 (567)
+..+. .-...||+.+|...+...
T Consensus 75 ---~~~i~--~l~v~C~n~gC~~~~~~~ 97 (118)
T 3hct_A 75 ---KREIL--SLMVKCPNEGCLHKMELR 97 (118)
T ss_dssp ---HHHHH--TSEEECSSTTCCCEEEGG
T ss_pred ---HHHHc--cceeECCCCCCCCEEeeH
Confidence 11222 235799999999887764
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1e-07 Score=73.92 Aligned_cols=51 Identities=24% Similarity=0.645 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+. .+ ...|| .|+..+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~----~~----~~~CP--~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLS----SS----SPKCT--ACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHT----TS----SCCCT--TTCCCCCTT
T ss_pred CcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHH----hC----cCCCC--CCCcCCChh
Confidence 4578999999987 6777799999999999999985 11 46899 598887654
No 11
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.47 E-value=1.9e-07 Score=75.75 Aligned_cols=56 Identities=34% Similarity=0.657 Sum_probs=45.2
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+......+. ...|| .|+..+...
T Consensus 17 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~---~~~CP--~Cr~~~~~~ 72 (85)
T 2ecw_A 17 KEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRNTDG---KGNCP--VCRVPYPFG 72 (85)
T ss_dssp CTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBCTTS---CBCCT--TTCCCCCTT
T ss_pred ccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccCCCC---CCCCC--CCCCcCCHH
Confidence 4578999999987 67778999999999999999987653332 68899 598887654
No 12
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.47 E-value=1.1e-07 Score=82.51 Aligned_cols=80 Identities=23% Similarity=0.490 Sum_probs=56.9
Q ss_pred cccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHhhcChHHHHHHHHHHH
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKKYSRYLL 219 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~ky~~~~~ 219 (567)
.+.|+||++.+ .+++.++|||.||..|+..|+... ...|| .|+..+....+... ...+.
T Consensus 23 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~~~~~-~~~l~-------- 81 (116)
T 1rmd_A 23 SISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCP--SCRYPCFPTDLESP-VKSFL-------- 81 (116)
T ss_dssp HTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCBCC-CHHHH--------
T ss_pred CCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCC--CCCCCCCHhhcccc-HHHHH--------
Confidence 67899999987 678889999999999999999752 24799 59998876544322 11111
Q ss_pred HHHHhcCCCcccCCCCCCCCceec
Q 008382 220 RSYVEDNRKTKWCPAPGCEHAIDF 243 (567)
Q Consensus 220 ~~~v~~~~~~~~CP~~~C~~~i~~ 243 (567)
..+. .-...||+.+|+..+..
T Consensus 82 -~~i~--~l~v~C~~~gC~~~~~~ 102 (116)
T 1rmd_A 82 -NILN--SLMVKCPAQDCNEEVSL 102 (116)
T ss_dssp -HHHH--HCEEECCSTTCCCEEEH
T ss_pred -HHHH--HhcCCCCCCCCcchhhH
Confidence 1111 12468999999887754
No 13
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=78.01 Aligned_cols=60 Identities=25% Similarity=0.638 Sum_probs=46.0
Q ss_pred CCcccccccccccccCC--eeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHhh
Q 008382 138 ARELTCGICFDTYSCDK--VVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDML 205 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~l 205 (567)
...+.|+||++.+.... ++.++|||.||..|+..|+... + ....|| .|+..+....+..+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---I---NGVRCP--FCSKITRITSLTQL 74 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---S---SCBCCT--TTCCCBCCSSTTTS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---C---CCcCCC--CCCCcccchhHHHH
Confidence 45689999999984332 7889999999999999999764 1 157899 59988766544433
No 14
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.45 E-value=1.1e-07 Score=78.78 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCeeecC-CCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCcc
Q 008382 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAV 197 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v 197 (567)
...+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 11 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 60 (92)
T ss_dssp CTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHHC---T----TCCCT--TTCCSS
T ss_pred CcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHhc---C----CCcCc--CCCCcC
Confidence 4578999999988 6888999 99999999999998742 2 46899 588876
No 15
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.43 E-value=1.1e-07 Score=76.14 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhH-HHhhcChHHHHHH
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDM-IDMLASDEDKKKY 214 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~-i~~ll~~e~~~ky 214 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+.... +.+......++.|
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~----~----~~~CP--~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA----G----HKTCP--KSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT----T----CCBCT--TTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH----C----cCCCC--CCcCCCChhhCccCHHHHHHHHHH
Confidence 3478999999987 78899999999999999999953 2 46899 5988886432 2233333444444
No 16
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.42 E-value=3.6e-08 Score=79.20 Aligned_cols=57 Identities=30% Similarity=0.612 Sum_probs=44.7
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+........ ....|| .|+..+...
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~--~~~~CP--~Cr~~~~~~ 66 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVTSMG--GKSSCP--VCGISYSFE 66 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSSSCC--CCCCCS--SSCCCCCSS
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhcccCCC--CCCcCC--CCCCcCCHh
Confidence 3478999999988 67788999999999999999876433222 267899 599888654
No 17
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=1.5e-07 Score=74.15 Aligned_cols=55 Identities=31% Similarity=0.616 Sum_probs=44.5
Q ss_pred CCCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHHh
Q 008382 137 NARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMIDM 204 (567)
Q Consensus 137 ~~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ 204 (567)
....+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+....+.+
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~ 66 (71)
T 2d8t_A 12 SLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCA--LCRQEIPEDFLDS 66 (71)
T ss_dssp SSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCS--SSCCBCCHHHHSC
T ss_pred CCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCc--CcCchhCHhhccC
Confidence 34578999999987 67888999999999999998743 25899 6999988766543
No 18
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.40 E-value=2.1e-07 Score=79.91 Aligned_cols=69 Identities=22% Similarity=0.532 Sum_probs=50.5
Q ss_pred cccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHH-hhcChHHHHHHHHHH
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMID-MLASDEDKKKYSRYL 218 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~-~ll~~e~~~ky~~~~ 218 (567)
.+.|+||++.+ .+++.++|||.||..|+..|+... .+ ...|| .|+..+....+. ......+++.+.+.+
T Consensus 21 ~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--~~----~~~CP--~Cr~~~~~~~~~~~~~l~~~~~~~~~~~ 90 (112)
T 1jm7_A 21 ILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK--KG----PSQCP--LCKNDITKRSLQESTRFSQLVEELLKII 90 (112)
T ss_dssp HTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS--SS----SCCCT--TTSCCCCTTTCBCCCSSSHHHHHHHHHH
T ss_pred CCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC--CC----CCCCc--CCCCcCCHhhcCccHHHHHHHHHHHHHH
Confidence 57899999987 677889999999999999998753 11 47899 599888765443 233345566665544
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=1.3e-07 Score=74.66 Aligned_cols=53 Identities=32% Similarity=0.759 Sum_probs=42.3
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+... + ....|| .|+..+...
T Consensus 18 ~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP--~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---C---GFFKCP--LCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSSS---C---SCCCCS--SSCCCCCCC
T ss_pred ccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHcC---C---CCCCCC--CCCCcCCcc
Confidence 4578999999987 678888999999999999997521 1 257899 598887643
No 20
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=3.6e-07 Score=70.01 Aligned_cols=45 Identities=33% Similarity=0.778 Sum_probs=36.8
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCC
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPD 190 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~ 190 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+... +. ...||.
T Consensus 18 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~~---~~~CP~ 62 (63)
T 2ysj_A 18 QEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS---CG---FFKCPL 62 (63)
T ss_dssp CCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC---SS---CCCCSC
T ss_pred ccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC---CC---CCcCcC
Confidence 4578999999988 678889999999999999999751 21 568884
No 21
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.34 E-value=1.9e-07 Score=82.00 Aligned_cols=49 Identities=22% Similarity=0.672 Sum_probs=41.2
Q ss_pred CcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
..+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 51 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA----Q----VFSCP--ACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCT
T ss_pred cCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH----C----cCCCC--CCCccCCC
Confidence 367899999988 68889999999999999999872 1 46899 59888764
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=5.6e-07 Score=72.67 Aligned_cols=48 Identities=29% Similarity=0.620 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCY--ICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCS--SSCCBCC
T ss_pred CCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCC--CcCcccc
Confidence 4468999999988 67888999999999999999864 35799 5988875
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.33 E-value=5.4e-07 Score=71.52 Aligned_cols=49 Identities=31% Similarity=0.712 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCeeecC-CCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCcc
Q 008382 138 ARELTCGICFDTYSCDKVVSAA-CGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAV 197 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v 197 (567)
...+.|+||++.+ .+++.++ |||.||..|+..|+... + ...|| .|+..+
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~---~----~~~CP--~Cr~~~ 62 (74)
T 2yur_A 13 PDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES---D----EHTCP--TCHQND 62 (74)
T ss_dssp CGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS---S----SSCCS--SSCCSS
T ss_pred CCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc---C----CCcCC--CCCCcC
Confidence 4578999999988 6788899 99999999999999752 1 46899 588764
No 24
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.3e-07 Score=72.29 Aligned_cols=50 Identities=28% Similarity=0.590 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+...
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSS
T ss_pred CCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCcc
Confidence 4578999999987 557766 99999999999999964 25799 598887654
No 25
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.32 E-value=5.1e-07 Score=76.13 Aligned_cols=53 Identities=21% Similarity=0.561 Sum_probs=43.4
Q ss_pred CcccccccccccccCCeee-cCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHH
Q 008382 139 RELTCGICFDTYSCDKVVS-AACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMID 203 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~-l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 203 (567)
..+.|+||++.+ .+++. ++|||.||..|+..|+... ...|| .|+..+....+.
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l~ 74 (100)
T 3lrq_A 21 EVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLRELV 74 (100)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCE
T ss_pred CCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHhH
Confidence 368899999988 67888 9999999999999999753 25899 699988765443
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.31 E-value=2.8e-07 Score=77.50 Aligned_cols=49 Identities=35% Similarity=0.992 Sum_probs=40.3
Q ss_pred CcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+...
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 70 (99)
T 2y43_A 21 DLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEP 70 (99)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGG
T ss_pred CCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChh
Confidence 367899999988 567777 89999999999999863 35899 699888753
No 27
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=4.9e-07 Score=67.84 Aligned_cols=45 Identities=29% Similarity=0.735 Sum_probs=35.7
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCC
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPD 190 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~ 190 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+... + ....||.
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP~ 57 (58)
T 2ecj_A 13 QVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWEDL---E---RDFPCPV 57 (58)
T ss_dssp CCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTSS---C---CSCCCSC
T ss_pred ccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHhc---C---CCCCCCC
Confidence 4568999999988 667889999999999999997531 1 1467883
No 28
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.29 E-value=1.3e-07 Score=85.13 Aligned_cols=84 Identities=23% Similarity=0.504 Sum_probs=56.3
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHH------HhhcChHHH
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMI------DMLASDEDK 211 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i------~~ll~~e~~ 211 (567)
...+.|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..... ..++....+
T Consensus 29 ~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~~~l~~~~~~~d~~~ 96 (141)
T 3knv_A 29 EAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS----G----PQNCA--ACVHEGIYEEGISILESSSAFPDNAA 96 (141)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGG----S----CEECH--HHHHTTCCCTTTTEECGGGCEECHHH
T ss_pred CcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHhc----C----CCCCC--CCCCcccccccccccchhhhcccHHH
Confidence 4578999999987 78888999999999999999852 2 36899 57765432211 122222222
Q ss_pred HHHHHHHHHHHHhcCCCcccCCCCCCCCceec
Q 008382 212 KKYSRYLLRSYVEDNRKTKWCPAPGCEHAIDF 243 (567)
Q Consensus 212 ~ky~~~~~~~~v~~~~~~~~CP~~~C~~~i~~ 243 (567)
. ..+. .-..+||+.+|...+..
T Consensus 97 ~--------~~i~--~L~v~Cpn~GC~~~~~l 118 (141)
T 3knv_A 97 R--------REVE--SLPAVCPSDGCTWKGTL 118 (141)
T ss_dssp H--------HHHH--TSEEECCSTTCCCEEEH
T ss_pred H--------HHHc--ccccccCCCCCCCEeEH
Confidence 1 1122 23579999999877764
No 29
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.28 E-value=5.1e-07 Score=72.47 Aligned_cols=53 Identities=25% Similarity=0.676 Sum_probs=40.6
Q ss_pred CCcccccccccccccCCeeecC--CCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAA--CGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...++|+||++.+...++..++ |||.||..||..++.. + ...|| .|+..+...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~----~----~~~CP--~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD----E----NGLCP--ACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS----S----CSBCT--TTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc----C----CCCCC--CCCCccCCC
Confidence 4578999999987555555554 9999999999998753 2 46899 599887643
No 30
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.27 E-value=1.8e-07 Score=73.37 Aligned_cols=54 Identities=33% Similarity=0.818 Sum_probs=41.5
Q ss_pred CCccccccccccccc-----CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHH
Q 008382 138 ARELTCGICFDTYSC-----DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMI 202 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i 202 (567)
.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---------CCCCC--CCCCccChhhe
Confidence 457889999998732 22378899999999999999864 24799 59988865443
No 31
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.27 E-value=3.6e-07 Score=81.85 Aligned_cols=46 Identities=30% Similarity=0.823 Sum_probs=38.7
Q ss_pred cccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.+.|+||++.+ .+++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 53 ~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECP--ICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCT--TTCCBCC
T ss_pred cCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCC--CCCCcCC
Confidence 56899999988 78899999999999999999742 35799 5888774
No 32
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.26 E-value=4.7e-07 Score=74.00 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+++.++|||.||+.|+..||.. ...|| .|+..+...
T Consensus 12 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~~ 61 (85)
T 2kr4_A 12 PDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN---------SPTDP--FNRQMLTES 61 (85)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCCGG
T ss_pred chheECcccCchh--cCCeECCCCCEECHHHHHHHHhc---------CCCCC--CCcCCCChH
Confidence 3479999999988 89999999999999999999974 24799 588877654
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.25 E-value=2.6e-07 Score=79.97 Aligned_cols=50 Identities=30% Similarity=0.802 Sum_probs=41.2
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
...+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+..
T Consensus 13 ~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK----A----SLCCP--FCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT----T----TSBCT--TTCCBCHH
T ss_pred CCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH----C----cCCCC--CCCcccCc
Confidence 3478999999987 67888999999999999988742 1 46899 69988864
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.25 E-value=8.4e-07 Score=65.80 Aligned_cols=49 Identities=24% Similarity=0.642 Sum_probs=39.0
Q ss_pred Cccccccccccccc--CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSC--DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~--~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
....|+||++.+.. ..++.++|||.||..|+..|+... ..|| .|+..++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCP--LCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCT--TSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCC--CCCCcCC
Confidence 46789999998743 347788999999999999998753 5798 5877653
No 35
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=7.1e-07 Score=69.38 Aligned_cols=50 Identities=36% Similarity=0.864 Sum_probs=38.9
Q ss_pred CCcccccccccccccC-----CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCD-----KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~-----~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.....|+||++.+... .++.++|||.||..|+..|+.. ...|| .|+..|.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCT--TTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCC--CCCCccC
Confidence 4578899999987421 2377899999999999999864 24799 5887764
No 36
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.22 E-value=2.3e-07 Score=71.04 Aligned_cols=53 Identities=34% Similarity=0.817 Sum_probs=40.9
Q ss_pred Cccccccccccccc-----CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHH
Q 008382 139 RELTCGICFDTYSC-----DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMI 202 (567)
Q Consensus 139 ~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i 202 (567)
+.+.|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCccce
Confidence 35789999998732 22377899999999999999865 24799 59988876543
No 37
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.22 E-value=3.5e-07 Score=70.56 Aligned_cols=54 Identities=22% Similarity=0.610 Sum_probs=40.1
Q ss_pred ccccccccc-ccccCC--eeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHHH
Q 008382 140 ELTCGICFD-TYSCDK--VVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMID 203 (567)
Q Consensus 140 ~~~C~IC~e-~~~~~~--~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i~ 203 (567)
...|+||++ .+.... ++.++|||.||..|+..++.. + ...|| .|+..+....+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~~~~ 59 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR----G----AGNCP--ECGTPLRKSNFR 59 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT----T----SSSCT--TTCCCCSSCCCE
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc----C----CCcCC--CCCCccccccce
Confidence 578999999 553222 256899999999999999863 2 46899 599888755443
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.20 E-value=5.8e-07 Score=81.64 Aligned_cols=49 Identities=27% Similarity=0.699 Sum_probs=41.6
Q ss_pred cccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
.+.|+||++.+ .+++.++|||.||..|+..++.. + ...|| .|+..+...
T Consensus 78 ~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~~~ 126 (150)
T 1z6u_A 78 SFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA----Q----VFSCP--ACRHDLGQN 126 (150)
T ss_dssp HTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT----T----CCBCT--TTCCBCCTT
T ss_pred CCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh----C----CCcCC--CCCccCCCC
Confidence 57899999987 78888999999999999999974 2 46899 599888654
No 39
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.17 E-value=2.4e-06 Score=66.52 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=39.9
Q ss_pred CCccccccccccccc-CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSC-DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~-~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---------NKKCP--ICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---------CSBCT--TTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---------CCCCc--CcCccccC
Confidence 446789999998754 45677899999999999999865 13599 58877653
No 40
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.17 E-value=5.7e-07 Score=75.83 Aligned_cols=49 Identities=10% Similarity=-0.038 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
...+.|+||++.+ .+|+.++|||.||+.|+..||.. ...|| .|+..+..
T Consensus 27 p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP--~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDP--FNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCS--SSCCBCCT
T ss_pred cHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCC--CCCCCCCh
Confidence 4579999999988 89999999999999999999853 24799 58888765
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.14 E-value=7.5e-07 Score=76.15 Aligned_cols=47 Identities=28% Similarity=0.685 Sum_probs=39.2
Q ss_pred CcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. ...|| .|+..+.
T Consensus 14 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET---------SKYCP--ICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS---------CSBCT--TTCCBSC
T ss_pred CcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh---------CCcCc--CCCcccc
Confidence 468899999988 678877 99999999999999854 25799 5888775
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.12 E-value=1.6e-06 Score=86.53 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=42.4
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+|+.++|||+||+.|+..|+... + ..|| .|+..++..
T Consensus 206 ~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~---~-----~~cP--~~~~~~~~~ 256 (281)
T 2c2l_A 206 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G-----HFNP--VTRSPLTQE 256 (281)
T ss_dssp CSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHT---C-----SSCT--TTCCCCCGG
T ss_pred CcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHHC---C-----CCCc--CCCCCCchh
Confidence 4589999999988 899999999999999999999651 2 2399 588888653
No 43
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.11 E-value=1.2e-06 Score=73.64 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCeeecCCC-CcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACG-HPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~Cg-H~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.|+||++.+ .+|+.++|| |.||+.|+..||.. ...|| .|+..+...
T Consensus 20 p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP--~~~~~l~~~ 70 (98)
T 1wgm_A 20 CDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---------DQTDP--FNRSPLTMD 70 (98)
T ss_dssp CTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---------SCBCT--TTCSBCCTT
T ss_pred cHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---------CCCCC--CCCCCCChh
Confidence 4579999999988 899999999 99999999999864 13799 588887653
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.08 E-value=3.1e-06 Score=67.66 Aligned_cols=52 Identities=23% Similarity=0.602 Sum_probs=40.2
Q ss_pred CCcccccccccccccC-CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
.....|+||++.+... .+..++|||.||..|+..|+.. ...|| .|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCP--VCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCT--TTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCc--CcCCccCCc
Confidence 4568999999987543 4456799999999999999853 24799 598887643
No 45
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.2e-06 Score=85.53 Aligned_cols=54 Identities=28% Similarity=0.572 Sum_probs=44.4
Q ss_pred CCcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.||||++.+ .+|++. .|||.||+.||..||... + ...||..+|+..+...
T Consensus 179 ~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~~---~----~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 179 KIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQGY---T----TRDCPQAACSQVVSMR 233 (267)
T ss_dssp BCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTTC---S----CEECSGGGCSCEECGG
T ss_pred ceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHhC---C----CCCCCcccccCcCchh
Confidence 3468999999988 788875 999999999999998641 2 4789988899987643
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=4.9e-06 Score=65.73 Aligned_cols=50 Identities=22% Similarity=0.586 Sum_probs=38.7
Q ss_pred CCcccccccccccccC-CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.....|+||++.+... .+..++|+|.||..|+..|+... ..|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP--~Cr~~~~ 63 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCP--LCNMPVL 63 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCT--TTCCBCS
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCC--CcCcccc
Confidence 3467899999997543 34556999999999999998642 3799 5887764
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=8e-07 Score=77.15 Aligned_cols=46 Identities=28% Similarity=0.672 Sum_probs=38.6
Q ss_pred CcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
..+.|+||++.+ .+++.+ +|||.||..|+..++. ..|| .|+..+..
T Consensus 21 ~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP--~Cr~~~~~ 67 (117)
T 1jm7_B 21 KLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCP--VCYTPAWI 67 (117)
T ss_dssp HTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCS--SSCCBCSC
T ss_pred hCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCc--CCCCcCcc
Confidence 368899999988 678888 9999999999999864 5799 59888753
No 48
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.04 E-value=1.2e-06 Score=65.57 Aligned_cols=44 Identities=25% Similarity=0.548 Sum_probs=36.1
Q ss_pred CcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
..+.|+||++.+ .+++.++|||.||..|+.. . ...|| .|+..+.
T Consensus 5 ~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~--------~----~~~CP--~Cr~~~~ 48 (56)
T 1bor_A 5 QFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA--------S----GMQCP--ICQAPWP 48 (56)
T ss_dssp CCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS--------S----SSSCS--SCCSSSS
T ss_pred cCCCceEeCCcc--CCeEEcCCCCcccHHHHcc--------C----CCCCC--cCCcEee
Confidence 468899999988 5788899999999999866 1 56899 5887764
No 49
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.01 E-value=3.3e-06 Score=69.83 Aligned_cols=51 Identities=24% Similarity=0.568 Sum_probs=39.6
Q ss_pred CCcccccccccccccC-CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
.....|+||++.+... .+..++|||.||..|+..|+.. ...|| .|+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP--~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCP--VCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCT--TTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCc--CcCccCCC
Confidence 3467899999988543 3567899999999999999843 24799 59887754
No 50
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.99 E-value=4.2e-06 Score=64.90 Aligned_cols=48 Identities=29% Similarity=0.663 Sum_probs=37.6
Q ss_pred CcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
....|+||++.+. ..++.++|||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ---------NPTCP--LCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH---------SCSTT--TTCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC---------cCcCc--CCChhhH
Confidence 3568999999873 23478899999999999999853 24799 5887765
No 51
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.98 E-value=3e-06 Score=62.75 Aligned_cols=49 Identities=22% Similarity=0.577 Sum_probs=37.1
Q ss_pred CcccccccccccccC-CeeecC-CCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCD-KVVSAA-CGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~-~~~~l~-CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
+...|+||++.+... .++.++ |||.||..|+..|+.. ...|| .|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP--~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCP--LCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCS--SSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCc--CCCCEeE
Confidence 357899999988543 356676 9999999999999743 24799 5877653
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.95 E-value=4.8e-06 Score=66.05 Aligned_cols=51 Identities=24% Similarity=0.597 Sum_probs=39.6
Q ss_pred CCcccccccccccccC-CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCD-KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~-~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
.....|+||++.+... .+..++|+|.||..|+..|+.. ...|| .|+..+.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---------~~~CP--~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---------NRTCP--ICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---------CSSCT--TTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---------CCcCc--CcCCcCCC
Confidence 3467899999988543 3467899999999999999864 23799 58887754
No 53
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.88 E-value=9.3e-06 Score=69.85 Aligned_cols=53 Identities=28% Similarity=0.537 Sum_probs=38.3
Q ss_pred cccccccccccccC----------------CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 140 ELTCGICFDTYSCD----------------KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 140 ~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
...|+||++.+... ....++|+|.||..|+..|+...... ....|| .|+..+.
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~----~~~~CP--~CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD----GSLQCP--SCKTIYG 93 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCS----SCCBCT--TTCCBSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCC----CCCcCC--CCCCccC
Confidence 45899999987431 12267899999999999998543211 156899 5987764
No 54
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.87 E-value=6.9e-06 Score=75.63 Aligned_cols=48 Identities=31% Similarity=0.771 Sum_probs=39.1
Q ss_pred CcccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
..+.|+||++.+ .+++.+ +|||.||..|+..|+.. + ...|| .|+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~----~~~CP--~Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS----G----NKECP--TCRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT----T----CCBCT--TTCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh----C----cCCCC--CCCCcCC
Confidence 367999999988 567766 99999999999999863 1 46799 5988874
No 55
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.85 E-value=8.1e-06 Score=75.85 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=42.5
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
...+.||||++.+ .+|+.++|||+||+.|+..||... + . .|| .|+..++..
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~~---~----~-tcP--~t~~~l~~~ 154 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRV---G----H-FDP--VTRSPLTQD 154 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT---C----S-BCT--TTCCBCCGG
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHhC---C----C-CCC--CCcCCCChh
Confidence 4589999999988 899999999999999999999752 2 2 599 588887653
No 56
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=2.7e-06 Score=66.50 Aligned_cols=47 Identities=28% Similarity=0.714 Sum_probs=37.0
Q ss_pred CCcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.....|+||++.+. + +.++|||.||..|+..|+. . ...|| .|+..+.
T Consensus 13 ~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~-----~----~~~CP--~Cr~~~~ 59 (70)
T 2ecn_A 13 TDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSD-----R----HRNCP--ICRLQMT 59 (70)
T ss_dssp CCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSC-----C----CSSCH--HHHHCTT
T ss_pred CCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHH-----C----cCcCC--CcCCccc
Confidence 44688999999874 3 7889999999999999864 1 46798 5766654
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.70 E-value=1.3e-05 Score=63.56 Aligned_cols=42 Identities=33% Similarity=0.810 Sum_probs=35.3
Q ss_pred cccccccccccccCCeeecCCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| .|+..+.
T Consensus 24 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCP--MCYTVIT 66 (74)
T ss_dssp HTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCT--TTCCBCS
T ss_pred CCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCC--CcCcCcc
Confidence 57899999987 78888999999 999998754 4798 5888775
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=2.6e-05 Score=61.82 Aligned_cols=43 Identities=33% Similarity=0.792 Sum_probs=35.0
Q ss_pred cccccccccccccCCeeecCCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
...|+||++.+ .+++.++|||. ||..|+.. ...|| .|+..+..
T Consensus 25 ~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP--~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCP--MCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCT--TTCCBCCC
T ss_pred CCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCc--cCCceecC
Confidence 56899999987 77888999999 99999952 25799 59887753
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.44 E-value=6.3e-05 Score=57.71 Aligned_cols=48 Identities=21% Similarity=0.385 Sum_probs=37.1
Q ss_pred CCcccccccccccccCCeeec--CCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCDKVVSA--ACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.....|.||++.. .+++.+ +|||. ||..|+..++.. ...|| -|+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKKR---------NKPCP--VCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHHT---------TCCCT--TTCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHHc---------CCcCC--CcCcchh
Confidence 3467899999976 566655 99999 899999998752 24799 5888764
No 60
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.44 E-value=3.4e-05 Score=67.74 Aligned_cols=55 Identities=33% Similarity=0.805 Sum_probs=42.7
Q ss_pred CCCccccccccccccc-----CCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhHH
Q 008382 137 NARELTCGICFDTYSC-----DKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDMI 202 (567)
Q Consensus 137 ~~~~~~C~IC~e~~~~-----~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~i 202 (567)
+.....|+||++.+.. ..++.++|||.||..|+..|+.. ...|| .|+..+....+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~ 128 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRY 128 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhcc
Confidence 4567889999998732 12377899999999999999864 24799 69998876654
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00014 Score=58.42 Aligned_cols=50 Identities=30% Similarity=0.476 Sum_probs=35.0
Q ss_pred Cccccccccccccc------------CCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 139 RELTCGICFDTYSC------------DKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 139 ~~~~C~IC~e~~~~------------~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
....|+||++.+.. ..++.+ +|||.|+..|+..|+.. .-.|| -|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---------NNRCP--LCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---------CCBCT--TTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---------CCCCC--CcCCCcch
Confidence 35567777777632 224444 59999999999999854 23799 59887654
No 62
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.37 E-value=0.00011 Score=76.04 Aligned_cols=48 Identities=25% Similarity=0.618 Sum_probs=39.6
Q ss_pred cccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
...|+||++.+ .+++.++|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~----~----~~~CP--~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES----E----GQGCP--FCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH----T----CSBCT--TTCCBCCE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc----C----CCCCC--CCCCccCC
Confidence 46899999987 77889999999999999998863 1 35899 59887754
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.34 E-value=0.0002 Score=55.55 Aligned_cols=45 Identities=24% Similarity=0.604 Sum_probs=36.3
Q ss_pred CCcccccccccccccCCeeecCCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCDKVVSAACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
.....|.||++.. .+++.+||||. ||..|... ...|| .|+..|..
T Consensus 13 ~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-------------~~~CP--~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-------------FQQCP--MCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-------------CSSCT--TTCCCCCC
T ss_pred CCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-------------CCCCC--CCCcchhc
Confidence 4467899999976 67888999999 99999983 24798 58887643
No 64
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.33 E-value=5.9e-05 Score=60.49 Aligned_cols=43 Identities=26% Similarity=0.696 Sum_probs=35.2
Q ss_pred cccccccccccccCCeeecCCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
...|+||++.. .+++.++|||. ||..|+..+ ..|| .|+..+..
T Consensus 18 ~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCE
T ss_pred CCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhC
Confidence 45799999976 78889999999 999998743 2899 59887754
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.32 E-value=0.00011 Score=56.19 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=35.9
Q ss_pred CcccccccccccccCCeeec--CCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSA--ACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l--~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
....|.||++.. .+++.+ ||||. ||..|...++.. ...|| -|+..+.
T Consensus 6 ~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP--iCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKKA---------GASCP--ICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHHT---------TCBCT--TTCCBCC
T ss_pred cCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHHh---------CCcCC--CcCchhh
Confidence 356899999976 455555 99998 999999988743 24799 5988774
No 66
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=97.28 E-value=8.1e-05 Score=60.70 Aligned_cols=48 Identities=23% Similarity=0.654 Sum_probs=39.3
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccc-ccCCCCCCCcccCCcch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAW-SDHGERTGGFYACNRYE 352 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~-~~H~~~~g~~y~C~~~~ 352 (567)
+-||.|..++....+-..++|. .|++.||+.|..+| ..|.. ..|..|.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~-~C~~~FC~~C~~~w~~~H~~-----~sC~~~~ 74 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCP-QCHQTFCVRCKRQWEEQHRG-----RSCEDFQ 74 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECT-TTCCEECSSSCSBCCTTTTT-----SCHHHHH
T ss_pred eECcCCCchheecCCCCceEeC-CCCCccccccCCchhhcCCC-----CChHHHH
Confidence 4599999999888888889997 89999999999999 45553 3576664
No 67
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.16 E-value=0.00031 Score=59.56 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=37.6
Q ss_pred CCcccccccccccccC----------------CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 138 ARELTCGICFDTYSCD----------------KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.....|+||++.+... .++.++|+|.|+..|+..|+.. ...|| -|+..+.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 3456799999987532 1355799999999999999854 24799 5887653
No 68
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.06 E-value=0.00084 Score=53.83 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCeeecCCC-----CcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 138 ARELTCGICFDTYSCDKVVSAACG-----HPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~Cg-----H~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
.....|.||++.+...+...+||. |.|...|+..|+... + ...|| .|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~---~----~~~Cp--lCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS---D----TRCCE--LCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH---C----CSBCS--SSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC---C----CCCCC--CCCCeeec
Confidence 346789999998866666678996 999999999999763 1 36899 58887643
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.77 E-value=0.00035 Score=71.75 Aligned_cols=42 Identities=36% Similarity=0.828 Sum_probs=35.5
Q ss_pred cccccccccccccCCeeecCCCCc-ccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 140 ELTCGICFDTYSCDKVVSAACGHP-FCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l~CgH~-fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
...|+||++.+ .+++.++|||. ||..|+..+ ..|| -|+..+.
T Consensus 295 ~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP--~CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCP--ICRGIIK 337 (345)
T ss_dssp TCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCT--TTCCBCC
T ss_pred CCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCC--CCCCCcc
Confidence 57899999987 78899999999 999998753 4799 5888775
No 70
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=96.76 E-value=0.0006 Score=54.69 Aligned_cols=40 Identities=28% Similarity=0.707 Sum_probs=34.5
Q ss_pred CcCCCC--CCcceeecCCCCccccCC----CCccchhhcccccccc
Q 008382 298 SKPCPK--CKRPIEKNQGCMHMTCSP----PCKFEFCWLCLGAWSD 337 (567)
Q Consensus 298 tk~CPk--C~~~IEK~~GCnhm~C~~----~C~~~FCw~C~~~~~~ 337 (567)
.+-||. |+.+|....+...++|.. .|++.||+.|+.+|+.
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 377987 999999888999999931 4999999999999965
No 71
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.75 E-value=0.00064 Score=51.26 Aligned_cols=39 Identities=33% Similarity=0.790 Sum_probs=33.0
Q ss_pred CCcccCCCCCCCCceecccCCCCceeee-c--CCccccccccccCC
Q 008382 227 RKTKWCPAPGCEHAIDFAAGSGNFDVSC-L--CSYNFCWNCTEEAH 269 (567)
Q Consensus 227 ~~~~~CP~~~C~~~i~~~~~~~~~~v~C-~--C~~~fC~~C~~~~H 269 (567)
.+.+.||. |...|+. ..+...++| . |++.|||.|+.+|-
T Consensus 4 ~~~k~CP~--C~~~Iek--~~GCnhmtC~~~~C~~~FCw~C~~~~~ 45 (60)
T 1wd2_A 4 ANTKECPK--CHVTIEK--DGGCNHMVCRNQNCKAEFCWVCLGPWE 45 (60)
T ss_dssp CCCCCCTT--TCCCCSS--CCSCCSSSCCSSGGGSCCSSSSCSCSG
T ss_pred ccceECcC--CCCeeEe--CCCCCcEEECCCCcCCEEeeCcCCCcc
Confidence 35688998 9999987 468899999 5 99999999998763
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.41 E-value=0.00051 Score=59.19 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=0.9
Q ss_pred CcccccccccccccC----------------CeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCD----------------KVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~----------------~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
..-.|+||++.+... .++.++|+|.|+..|+..|+.. ...|| -|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---------~~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---------CCcCC--CCCCeee
Confidence 346899999988431 1223589999999999999865 24699 5877653
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=96.39 E-value=0.002 Score=48.76 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=37.6
Q ss_pred cccccccccccccCCeeec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 140 ELTCGICFDTYSCDKVVSA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 140 ~~~C~IC~e~~~~~~~~~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
.+.|+||++.+ .+++.+ ++||.|++.|+..|+... + .||. ++..+...
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~~---~------~cP~--t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKDT---G------NDPI--TNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHHH---S------BCTT--TCCBCCGG
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHhC---C------CCcC--CcCCCChh
Confidence 57899999987 688888 899999999999999742 2 3884 56666543
No 74
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.89 E-value=0.01 Score=59.84 Aligned_cols=61 Identities=23% Similarity=0.464 Sum_probs=42.3
Q ss_pred CCccccccccccccc-CCee-----ecCCCCcccHhhHHHHHHhhhcCCC--CccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSC-DKVV-----SAACGHPFCRACWRGYISATVNDGP--GCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~-~~~~-----~l~CgH~fC~~Cl~~y~~~~i~~g~--~~~~i~CP~~~C~~~v~~~ 200 (567)
.....|+|||+.+.. ..+. ...|+|.|...|+..|+.+.-.... ....=.|| -|+..|+-.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CP--yCr~pIs~s 374 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCP--FCKAKLSTS 374 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECT--TTCCEEEGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCC--CCCCcCCcc
Confidence 356789999998754 2232 3479999999999999987543221 11234699 699887643
No 75
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.86 E-value=0.019 Score=45.02 Aligned_cols=50 Identities=22% Similarity=0.481 Sum_probs=37.0
Q ss_pred CcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
....|.||++.+.... .-..|+|.|-..|+..||.+.- .-.|| .|+..++
T Consensus 14 ~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~~-------~~~CP--~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSNA-------EPRCP--HCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTCS-------SCCCT--TTCSCCC
T ss_pred CCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhcC-------CCCCC--CCcCcCC
Confidence 3568999999885432 2238999999999999996531 24799 5887664
No 76
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=94.28 E-value=0.076 Score=37.29 Aligned_cols=41 Identities=15% Similarity=0.359 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 78 QEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 78 ~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
+.+.|.+...|.++++..|..+|...+||.+.-+..||.++
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYEDG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45679999999999999999999999999999999998764
No 77
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.77 E-value=0.19 Score=37.83 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 77 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
.+.+.|.+...|.+.++..|+.+|...+||.+.-+..||.++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDGG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 456679999999999999999999999999999999998765
No 78
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.70 E-value=0.052 Score=44.97 Aligned_cols=34 Identities=18% Similarity=0.594 Sum_probs=25.9
Q ss_pred CcccccccccccccCCeee--cCCCCcccHhhHHHHH
Q 008382 139 RELTCGICFDTYSCDKVVS--AACGHPFCRACWRGYI 173 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~--l~CgH~fC~~Cl~~y~ 173 (567)
+.+.|+||.+.+. .+.+. +.|+|.||..|+..+.
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHHHh
Confidence 3578999997642 33444 8999999999999843
No 79
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=92.67 E-value=0.082 Score=43.51 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=31.7
Q ss_pred cccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 142 TCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 142 ~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
.|++|--.+. .-...+||.|.||.+|...+.... .-.|| .|+..|.
T Consensus 3 fC~~C~~Pi~-iygRmIPCkHvFCydCa~~~~~~~--------~k~Cp--~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIK-VYGRMIPCKHVFCYDCAILHEKKG--------DKMCP--GCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCS-EEEEEETTCCEEEHHHHHHHHHTT--------CCBCT--TTCCBCS
T ss_pred ecCccCCCeE-EEeeeccccccHHHHHHHHHHhcc--------CCCCc--CcCCeee
Confidence 5888865441 233568999999999999987542 23577 5777664
No 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.88 E-value=0.014 Score=48.43 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=44.1
Q ss_pred ceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCC-CcceeecCCCCccccCCCCccch
Q 008382 250 FDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKC-KRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 250 ~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC-~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
....| .|++.||..|...+|....-...+..+.... +. ......|+.+ +.+++ ++|. .|+..+
T Consensus 17 av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~-~~------~~~~~~C~~H~~e~l~-------~fC~-~~~~~i 81 (101)
T 2jun_A 17 AVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIP-DS------HIRGLMCLEHEDEKVN-------MYCV-TDDQLI 81 (101)
T ss_dssp CCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCC-SC------CSSCCCCSSCSSSCCC-------EEET-TTTEEE
T ss_pred ceEECCcCChHHhHHHCHHHhccCCccCCCeeecccc-cc------CccCCcCcCcCCCcce-------EECC-CCCCcc
Confidence 45689 9999999999987675321111111000000 00 0112579999 57888 9999 899999
Q ss_pred hhcccc
Q 008382 328 CWLCLG 333 (567)
Q Consensus 328 Cw~C~~ 333 (567)
|+.|..
T Consensus 82 C~~C~~ 87 (101)
T 2jun_A 82 CALCKL 87 (101)
T ss_dssp CHHHHH
T ss_pred chhcCC
Confidence 999963
No 81
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=90.71 E-value=0.3 Score=36.43 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=35.3
Q ss_pred CcccccccccccccCCeeecCCC--C---cccHhhHHHHHHhhhcCCCCccccccCCCCCCCccc
Q 008382 139 RELTCGICFDTYSCDKVVSAACG--H---PFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVG 198 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~Cg--H---~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~ 198 (567)
....|.||++.. .+...+||. | .|-..|+..|+... + ...|| .|+..+.
T Consensus 5 ~~~~CrIC~~~~--~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~---~----~~~C~--~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEEL--GNERFRACGCTGELENVHRSCLSTWLTIS---R----NTACQ--ICGVVYN 58 (60)
T ss_dssp SCCEETTTTEEC--SCCCCCSCCCSSGGGSCCHHHHHHHHHHH---T----CSBCT--TTCCBCC
T ss_pred CCCEeEEeecCC--CCceecCcCCCCchhhhHHHHHHHHHHhC---C----CCccC--CCCCeee
Confidence 456899999874 333457754 4 89999999999753 2 36899 5877654
No 82
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.87 E-value=0.47 Score=36.27 Aligned_cols=41 Identities=12% Similarity=0.254 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 78 QEDDITKVSTVLS-ISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 78 ~~~~i~~v~~il~-i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
+.+.|.+...|.+ .++..|+.+|...+||.+.-+..||.+.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLNEQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4567999999999 8899999999999999999999999764
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.73 E-value=0.6 Score=36.46 Aligned_cols=51 Identities=31% Similarity=0.615 Sum_probs=38.4
Q ss_pred CCCCcccccccccccccCCeeecC--CCCcccHhhHHHHHHhhhcCCCCccccccCC
Q 008382 136 SNARELTCGICFDTYSCDKVVSAA--CGHPFCRACWRGYISATVNDGPGCLMLRCPD 190 (567)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~~~~~l~--CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~ 190 (567)
++...+.|.+|-+.+..+-++..| =.|.||..|-+.+|..+-..+ .+-||.
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~----EvyCPS 63 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATG----EVYCPS 63 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSS----CCCCTT
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCC----cEECCC
Confidence 345678999999988655565544 379999999999999875443 466775
No 84
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.67 E-value=0.67 Score=35.26 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
+.|.+...|.+.++..|+..|...+||.+.-+..||.++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 468889999999999999999999999999999998764
No 85
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=87.00 E-value=0.94 Score=37.51 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 77 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
.+.+.|..|+++.+++++.|+..|...+|+++..++.++.+.
T Consensus 38 d~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 38 DFEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 357899999999999999999999999999999998877653
No 86
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=86.73 E-value=0.3 Score=36.63 Aligned_cols=33 Identities=24% Similarity=0.796 Sum_probs=23.2
Q ss_pred ecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceeec
Q 008382 254 CLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKN 311 (567)
Q Consensus 254 C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK~ 311 (567)
=.|||.||..|.. +|.. .+...||.|+.++.++
T Consensus 24 ~~CgH~fC~~Ci~------------~~~~-------------~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 24 NVCGHTLCESCVD------------LLFV-------------RGAGNCPECGTPLRKS 56 (65)
T ss_dssp CTTCCCEEHHHHH------------HHHH-------------TTSSSCTTTCCCCSSC
T ss_pred CCCCCHhHHHHHH------------HHHH-------------cCCCcCCCCCCccccc
Confidence 3899999999962 2221 1236899999988753
No 87
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=86.32 E-value=0.5 Score=38.84 Aligned_cols=49 Identities=24% Similarity=0.645 Sum_probs=33.5
Q ss_pred cCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCccee
Q 008382 231 WCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIE 309 (567)
Q Consensus 231 ~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IE 309 (567)
+||. |+..|.. ...- .|++.||..|-.. |.....+.||.|+.+|.
T Consensus 3 fC~~--C~~Pi~i-------ygRmIPCkHvFCydCa~~-------------------------~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDK--CGLPIKV-------YGRMIPCKHVFCYDCAIL-------------------------HEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp BCTT--TCSBCSE-------EEEEETTCCEEEHHHHHH-------------------------HHHTTCCBCTTTCCBCS
T ss_pred ecCc--cCCCeEE-------EeeeccccccHHHHHHHH-------------------------HHhccCCCCcCcCCeee
Confidence 6777 8766543 2345 8999999998522 22223489999999998
Q ss_pred ecCC
Q 008382 310 KNQG 313 (567)
Q Consensus 310 K~~G 313 (567)
+.+-
T Consensus 49 rVe~ 52 (101)
T 3vk6_A 49 RIEQ 52 (101)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 6543
No 88
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=86.05 E-value=0.28 Score=43.05 Aligned_cols=28 Identities=29% Similarity=0.586 Sum_probs=19.3
Q ss_pred cCCCCCCCCceecccCCCCceeeecCCcccccccccc
Q 008382 231 WCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEE 267 (567)
Q Consensus 231 ~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~ 267 (567)
.||- |...+. ..+...|||.||..|...
T Consensus 55 ~C~i--C~~~~~-------~~~~~~CgH~fc~~Ci~~ 82 (138)
T 4ayc_A 55 QCII--CSEYFI-------EAVTLNCAHSFCSYCINE 82 (138)
T ss_dssp BCTT--TCSBCS-------SEEEETTSCEEEHHHHHH
T ss_pred CCcc--cCcccC-------CceECCCCCCccHHHHHH
Confidence 5887 865432 124558999999999643
No 89
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=85.93 E-value=1.6 Score=33.51 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 77 QQEDDITKVSTVL-SISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 77 ~~~~~i~~v~~il-~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.+...|.+|.+++ .+..+.+..+|.+|+-|++.++...+++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE~ 53 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILEE 53 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHcc
Confidence 4667889999988 5789999999999999999999887664
No 90
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=85.25 E-value=0.19 Score=41.51 Aligned_cols=35 Identities=20% Similarity=0.576 Sum_probs=28.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+. +.++|. .|||.||+.|+..|-...
T Consensus 23 ~~C~IC~~~~~-----~p~~~~-~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 23 FRCFICMEKLR-----DARLCP-HCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp TBCTTTCSBCS-----SEEECT-TTCCEEEHHHHHHHHHHT
T ss_pred CCCccCCcccc-----CccccC-CCCChhhHHHHHHHHHHC
Confidence 57999988876 456777 799999999999986544
No 91
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.07 E-value=0.53 Score=35.65 Aligned_cols=54 Identities=28% Similarity=0.645 Sum_probs=32.6
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+......+...+.-.|||.||..|.. +|+.. ...||.|+..+
T Consensus 10 ~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~------------~~~~~--------------~~~CP~Cr~~~ 61 (71)
T 3ng2_A 10 TVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCLR------------DSLKN--------------ANTCPTCRKKI 61 (71)
T ss_dssp CCBCTT--TCCBHHHHHTTTCCEEECTTSCEEEHHHHH------------HHHHH--------------CSBCTTTCCBC
T ss_pred CCCCcc--cChhhhccccccCCeEeCCCCChHhHHHHH------------HHHHc--------------CCCCCCCCCcc
Confidence 356877 765543221112222334899999999963 33321 16899999988
Q ss_pred ee
Q 008382 309 EK 310 (567)
Q Consensus 309 EK 310 (567)
..
T Consensus 62 ~~ 63 (71)
T 3ng2_A 62 NH 63 (71)
T ss_dssp CC
T ss_pred Ch
Confidence 74
No 92
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=84.03 E-value=1.2 Score=31.13 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCH-HHHHHHHHHcCCChhhhHHhhh
Q 008382 78 QEDDITKVSTVLSISR-VDASILLRHYNWSVSKVHDAWF 115 (567)
Q Consensus 78 ~~~~i~~v~~il~i~~-~~a~~LL~~~~W~~~~l~e~~~ 115 (567)
..+.|....+|.+++. +.|+..|...+||.+.-+..|+
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~ 43 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVI 43 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC-
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHc
Confidence 4567889999999995 9999999999999887766554
No 93
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.85 E-value=0.72 Score=34.58 Aligned_cols=53 Identities=28% Similarity=0.647 Sum_probs=31.6
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+......+...+.-.|+|.||..|. ..|+.. ...||.|+.+|
T Consensus 15 ~~~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci------------~~~~~~--------------~~~CP~Cr~~~ 66 (69)
T 2ea6_A 15 TVSCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCL------------RDSLKN--------------ANTCPTCRKKI 66 (69)
T ss_dssp CCCCTT--TCCCHHHHTTTTCCEEECSSSCEEEHHHH------------HHHHHH--------------CSSCTTTCCCC
T ss_pred CCCCcc--cCccccccccccCCeEeCCCCChhcHHHH------------HHHHHc--------------CCCCCCCCCcc
Confidence 356776 76544322111122233389999999985 334321 26899999887
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 67 ~ 67 (69)
T 2ea6_A 67 N 67 (69)
T ss_dssp C
T ss_pred C
Confidence 5
No 94
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=83.75 E-value=0.72 Score=41.59 Aligned_cols=46 Identities=24% Similarity=0.689 Sum_probs=30.7
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
..||- |...+. ..+.. .|||.||..|.. +|+. .....||.|+.++
T Consensus 55 ~~C~I--C~~~~~-------~p~~~~~CgH~fC~~Ci~------------~~~~-------------~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 55 LMCPI--CLDMLK-------NTMTTKECLHRFCADCII------------TALR-------------SGNKECPTCRKKL 100 (165)
T ss_dssp HBCTT--TSSBCS-------SEEEETTTCCEEEHHHHH------------HHHH-------------TTCCBCTTTCCBC
T ss_pred CCCcc--cChHhh-------CcCEeCCCCChhHHHHHH------------HHHH-------------hCcCCCCCCCCcC
Confidence 36887 865442 24566 999999999952 3332 2236799998876
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 101 ~ 101 (165)
T 2ckl_B 101 V 101 (165)
T ss_dssp C
T ss_pred C
Confidence 4
No 95
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=83.02 E-value=0.52 Score=34.77 Aligned_cols=52 Identities=27% Similarity=0.658 Sum_probs=30.5
Q ss_pred cCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceee
Q 008382 231 WCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 310 (567)
Q Consensus 231 ~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK 310 (567)
.||- |...+......+...+.-.|||.||..|. .+|+.. ...||.|+.++..
T Consensus 5 ~C~I--C~~~~~~~~~~~~~~~~~~CgH~fc~~Ci------------~~~~~~--------------~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 5 SCPI--CMDGYSEIVQNGRLIVSTECGHVFCSQCL------------RDSLKN--------------ANTCPTCRKKINH 56 (64)
T ss_dssp BCTT--TCCBHHHHHHTTCCEEEETTSCEEEHHHH------------HHHHHH--------------CSBCTTTCCBCTT
T ss_pred CCCc--cChhhhCccccCCCEEeCCCCCchhHHHH------------HHHHHc--------------CCCCCCCCccCCc
Confidence 5666 65544321111122233489999999985 334321 2689999998763
No 96
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.38 E-value=0.79 Score=35.28 Aligned_cols=51 Identities=22% Similarity=0.621 Sum_probs=32.3
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
..||- |...+.. ...+.. .|+|.||..|.. .|+.. ...||-|+..+
T Consensus 24 ~~C~I--C~~~~~~-----~~~~~~l~C~H~fh~~Ci~------------~w~~~--------------~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVV--CMCDFES-----RQLLRVLPCNHEFHAKCVD------------KWLKA--------------NRTCPICRADS 70 (75)
T ss_dssp CEETT--TTEECCB-----TCEEEEETTTEEEETTHHH------------HHHHH--------------CSSCTTTCCCC
T ss_pred CCCeE--CCcccCC-----CCeEEEECCCCHhHHHHHH------------HHHHc--------------CCcCcCcCCcC
Confidence 45766 6543321 123444 899999999853 34321 15899999998
Q ss_pred eecCC
Q 008382 309 EKNQG 313 (567)
Q Consensus 309 EK~~G 313 (567)
....|
T Consensus 71 ~~~~g 75 (75)
T 1x4j_A 71 GPSSG 75 (75)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 86655
No 97
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.97 E-value=1.3 Score=34.85 Aligned_cols=54 Identities=22% Similarity=0.444 Sum_probs=32.5
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+.. .....+.-.|||.||..|.. .|+... .+...||.|+.++
T Consensus 15 ~~~C~I--C~~~~~~---~~~~~~~~~CgH~fC~~Ci~------------~~~~~~-----------~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 15 VLECPI--CMESFTE---EQLRPKLLHCGHTICRQCLE------------KLLASS-----------INGVRCPFCSKIT 66 (88)
T ss_dssp CCBCTT--TCCBCCT---TSSCEEECSSSCEEEHHHHH------------HHHHHC-----------SSCBCCTTTCCCB
T ss_pred CCCCcc--CCccccc---cCCCeEECCCCChhhHHHHH------------HHHHcC-----------CCCcCCCCCCCcc
Confidence 456887 7654432 11112334899999999953 333221 1237899999987
Q ss_pred ee
Q 008382 309 EK 310 (567)
Q Consensus 309 EK 310 (567)
..
T Consensus 67 ~~ 68 (88)
T 2ct2_A 67 RI 68 (88)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 98
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.97 E-value=0.95 Score=38.66 Aligned_cols=46 Identities=22% Similarity=0.583 Sum_probs=29.9
Q ss_pred ccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCccee
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIE 309 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IE 309 (567)
..||- |...+. ..+.-.|||.||..|... |+ ..+...||.|+.++.
T Consensus 53 ~~C~I--C~~~~~-------~p~~~~CgH~fC~~Ci~~------------~~-------------~~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCIC--CQELVF-------RPITTVCQHNVCKDCLDR------------SF-------------RAQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTT--TSSBCS-------SEEECTTSCEEEHHHHHH------------HH-------------HTTCCBCTTTCCBCC
T ss_pred CCCCc--CChHHc-------CcEEeeCCCcccHHHHHH------------HH-------------hHCcCCCCCCCccCC
Confidence 46887 875443 123348999999999633 22 122358999988875
No 99
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.76 E-value=2.1 Score=30.35 Aligned_cols=48 Identities=21% Similarity=0.478 Sum_probs=29.2
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
..||- |...+.. +...+.. .|+|.||..|. .+|+. .+ ..||.|+..|
T Consensus 6 ~~C~I--C~~~~~~----~~~~~~~~~CgH~fc~~Ci------------~~~~~-------------~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 6 SGCPI--CLEDIHT----SRVVAHVLPCGHLLHRTCY------------EEMLK-------------EG-YRCPLCSGPS 53 (55)
T ss_dssp CSCTT--TCCCCCT----TTSCEEECTTSCEEETTHH------------HHHHH-------------HT-CCCTTSCCSS
T ss_pred CcCcc--cChhhcC----CCcCeEecCCCCcccHHHH------------HHHHH-------------cC-CcCCCCCCcC
Confidence 45766 6544321 1123445 89999999986 23332 22 7899999876
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 54 ~ 54 (55)
T 2ecm_A 54 S 54 (55)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=81.33 E-value=0.52 Score=37.27 Aligned_cols=50 Identities=22% Similarity=0.460 Sum_probs=33.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCcc-----chhhccccccccCCCCCCCcccCCcc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKF-----EFCWLCLGAWSDHGERTGGFYACNRY 351 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~-----~FCw~C~~~~~~H~~~~g~~y~C~~~ 351 (567)
..||.|+.+|+.+++ +..|. .|+. -||-.|+.+......-..--|.||.-
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~-~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C 57 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCE-TCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNG 57 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECT-TTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTT
T ss_pred CCCCCCCCccccCCC--ceECc-cccccCCCcccCcchhhHHHHHHhcCCcCeeeccC
Confidence 579999999999888 55688 7864 37999988764322110134666653
No 101
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=80.94 E-value=2.8 Score=27.93 Aligned_cols=34 Identities=12% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHh
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDA 113 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~ 113 (567)
.+.|.++.++ |.++..|+..|+..+||++.-++.
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~ 38 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASF 38 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 4578889887 999999999999999999877654
No 102
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.81 E-value=0.39 Score=35.62 Aligned_cols=33 Identities=24% Similarity=0.651 Sum_probs=25.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+. +.++- .|||.||+.|+..|...
T Consensus 21 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGET 53 (63)
T ss_dssp CBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHH
T ss_pred CCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHc
Confidence 57999987766 23444 49999999999998754
No 103
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=80.01 E-value=1 Score=32.63 Aligned_cols=27 Identities=30% Similarity=0.769 Sum_probs=21.4
Q ss_pred cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceee
Q 008382 255 LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 310 (567)
Q Consensus 255 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK 310 (567)
.|+|.||..|...+ ...||.|+..+..
T Consensus 23 ~CgH~fC~~Ci~~~-----------------------------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 23 PCLHTLCSGCLEAS-----------------------------GMQCPICQAPWPL 49 (56)
T ss_dssp TTSCCSBTTTCSSS-----------------------------SSSCSSCCSSSSC
T ss_pred CCCCcccHHHHccC-----------------------------CCCCCcCCcEeec
Confidence 79999999997551 2789999988763
No 104
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=79.95 E-value=0.48 Score=38.49 Aligned_cols=50 Identities=22% Similarity=0.506 Sum_probs=35.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccc-----hhhccccccccCCCCCCCcccCCcc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFE-----FCWLCLGAWSDHGERTGGFYACNRY 351 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~-----FCw~C~~~~~~H~~~~g~~y~C~~~ 351 (567)
..||.|+.+++.++| +.+|. .|+.. +|-.|..+......-..--|.|+.-
T Consensus 33 ~~CP~Cq~eL~~~g~--~~hC~-~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~c 87 (101)
T 2jne_A 33 LHCPQCQHVLDQDNG--HARCR-SCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHG 87 (101)
T ss_dssp CBCSSSCSBEEEETT--EEEET-TTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTT
T ss_pred ccCccCCCcceecCC--EEECc-cccchhhccccCcchhhHHHHHHHhcCcchhhccC
Confidence 789999999999988 66798 89754 6999998865433211134666653
No 105
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.01 E-value=1.8 Score=33.07 Aligned_cols=49 Identities=27% Similarity=0.615 Sum_probs=30.1
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+.. ....+...|+|.||..|.. .|+.. + ..||-|+.+|
T Consensus 15 ~~~C~I--C~~~~~~----~~~~~~~~C~H~f~~~Ci~------------~~~~~-------------~-~~CP~Cr~~~ 62 (74)
T 2ep4_A 15 HELCAV--CLEDFKP----RDELGICPCKHAFHRKCLI------------KWLEV-------------R-KVCPLCNMPV 62 (74)
T ss_dssp SCBCSS--SCCBCCS----SSCEEEETTTEEEEHHHHH------------HHHHH-------------C-SBCTTTCCBC
T ss_pred CCCCcC--CCcccCC----CCcEEEcCCCCEecHHHHH------------HHHHc-------------C-CcCCCcCccc
Confidence 346776 7654321 1222334899999999853 34321 1 5899999887
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 63 ~ 63 (74)
T 2ep4_A 63 L 63 (74)
T ss_dssp S
T ss_pred c
Confidence 5
No 106
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=78.84 E-value=1.4 Score=31.39 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=19.5
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccC
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEA 268 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~ 268 (567)
..||- |...+.. +...+.. .|++.||..|...|
T Consensus 6 ~~C~I--C~~~~~~----~~~~~~~~~C~H~f~~~Ci~~w 39 (55)
T 1iym_A 6 VECAV--CLAELED----GEEARFLPRCGHGFHAECVDMW 39 (55)
T ss_dssp CCCTT--TCCCCCT----TSCCEECSSSCCEECTTHHHHT
T ss_pred CcCcc--CCccccC----CCceEECCCCCCcccHHHHHHH
Confidence 35665 6544321 2223344 59999999997554
No 107
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=77.46 E-value=1.3 Score=34.16 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=29.7
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+.. ....+.-.|+|.||..|... |+.. ...||.|+..|
T Consensus 15 ~~~C~I--C~~~~~~----~~~~~~~~C~H~fc~~Ci~~------------~~~~--------------~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPV--CKEDYAL----GESVRQLPCNHLFHDSCIVP------------WLEQ--------------HDSCPVCRKSL 62 (78)
T ss_dssp SCCCTT--TTSCCCT----TSCEEECTTSCEEETTTTHH------------HHTT--------------TCSCTTTCCCC
T ss_pred CCCCee--CCccccC----CCCEEEeCCCCeecHHHHHH------------HHHc--------------CCcCcCcCCcc
Confidence 346776 7654321 11112237999999999633 3221 16899999887
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 63 ~ 63 (78)
T 2ect_A 63 T 63 (78)
T ss_dssp C
T ss_pred C
Confidence 6
No 108
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.45 E-value=0.61 Score=35.65 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=25.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
..||-|...+.. .++-. .|+|.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 16 ILCSICKGYLID-----ATTIT-ECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GSCTTTSSCCSS-----CEECS-SSCCEECHHHHHHHHHH
T ss_pred CCCCCCChHHHC-----cCEEC-CCCCHHHHHHHHHHHHc
Confidence 579999887653 35554 59999999999888644
No 109
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=77.26 E-value=0.7 Score=36.16 Aligned_cols=33 Identities=21% Similarity=0.677 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+.. .+.. .|+|.||+.|+..|...
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA--DCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC--TTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeC--CCCCHHHHHHHHHHHHh
Confidence 579999877652 2343 49999999999987654
No 110
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.84 E-value=0.85 Score=34.73 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=25.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
..||-|...+. +.++- .|||.||+.|+..|..
T Consensus 21 ~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 21 VICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCS
T ss_pred CEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHH
Confidence 57999987765 23444 4999999999999875
No 111
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.26 E-value=2.1 Score=32.08 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=29.8
Q ss_pred cccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcc
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRP 307 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~ 307 (567)
...||- |...+.. + ..+.. .|+|.||..|. ..|+.. ...||-|+..
T Consensus 14 ~~~C~I--C~~~~~~----~-~~~~~~~C~H~fc~~Ci------------~~~~~~--------------~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTI--CLSILEE----G-EDVRRLPCMHLFHQVCV------------DQWLIT--------------NKKCPICRVD 60 (69)
T ss_dssp CCSBTT--TTBCCCS----S-SCEEECTTSCEEEHHHH------------HHHHHH--------------CSBCTTTCSB
T ss_pred CCCCee--CCccccC----C-CcEEEeCCCCHHHHHHH------------HHHHHc--------------CCCCcCcCcc
Confidence 346776 7544321 1 12334 89999999985 334322 1569999988
Q ss_pred ee
Q 008382 308 IE 309 (567)
Q Consensus 308 IE 309 (567)
|.
T Consensus 61 ~~ 62 (69)
T 2kiz_A 61 IE 62 (69)
T ss_dssp SC
T ss_pred cc
Confidence 76
No 112
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=75.83 E-value=1.8 Score=38.39 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=18.7
Q ss_pred ccCCCCCCCCceecccCCCCceeeecCCcccccccc
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCT 265 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 265 (567)
..||- |...+. ..+.-.||+.||..|.
T Consensus 79 ~~C~I--C~~~~~-------~pv~~~CgH~fC~~Ci 105 (150)
T 1z6u_A 79 FMCVC--CQELVY-------QPVTTECFHNVCKDCL 105 (150)
T ss_dssp TBCTT--TSSBCS-------SEEECTTSCEEEHHHH
T ss_pred CEeec--CChhhc-------CCEEcCCCCchhHHHH
Confidence 46887 865442 1234489999999986
No 113
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=75.09 E-value=1.9 Score=36.36 Aligned_cols=28 Identities=32% Similarity=0.673 Sum_probs=19.2
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCcccccccc
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCT 265 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 265 (567)
...||- |...+. ..+...||+.||..|.
T Consensus 18 ~~~C~I--C~~~~~-------~p~~~~CgH~fC~~Ci 45 (118)
T 3hct_A 18 KYECPI--CLMALR-------EAVQTPCGHRFCKACI 45 (118)
T ss_dssp GGBCTT--TCSBCS-------SEEECTTSCEEEHHHH
T ss_pred CCCCCc--CChhhc-------CeEECCcCChhhHHHH
Confidence 346887 875442 1244589999999985
No 114
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=74.67 E-value=1.6 Score=42.00 Aligned_cols=51 Identities=22% Similarity=0.462 Sum_probs=36.9
Q ss_pred CcccccccccccccCCeeecCCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccch
Q 008382 139 RELTCGICFDTYSCDKVVSAACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQ 199 (567)
Q Consensus 139 ~~~~C~IC~e~~~~~~~~~l~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~ 199 (567)
....|.||.+..... ..-..|+|.|...|+..|+... + ...|| .|+..++.
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~---~----~~~CP--~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSN---A----EPRCP--HCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTC---S----SCBCT--TTCCBCCS
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhC---C----CCCCC--CCCCCCCC
Confidence 367899999987532 2222399999999999998642 1 46899 68887654
No 115
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=74.56 E-value=0.71 Score=38.42 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=27.4
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+. +.++.. .|||.||+.|+..|...+
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 16 LMCVLCGGYFI-----DATTII-ECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp TBCTTTSSBCS-----SEEEET-TTCCEEEHHHHHHHHTSC
T ss_pred CCCccCChHHh-----CcCEeC-CCCChhhHHHHHHHHHhC
Confidence 67999988775 346664 599999999999886543
No 116
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=74.23 E-value=1.4 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.582 Sum_probs=25.2
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+. +.++. .|||.||+.|+..|...
T Consensus 13 ~~C~IC~~~~~-----~p~~l--~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLT-----EPLSL--DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECS-----SCCCC--SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccC-----CeeEC--CCCCHHHHHHHHHHHHh
Confidence 46999987764 23444 49999999999988765
No 117
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=74.15 E-value=0.96 Score=37.62 Aligned_cols=34 Identities=24% Similarity=0.620 Sum_probs=25.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+. +.++ . .|||.||+.|+..|....
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~ 55 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQK 55 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSS
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhC
Confidence 68999988764 2334 3 499999999999887654
No 118
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=73.77 E-value=1.1 Score=35.14 Aligned_cols=35 Identities=26% Similarity=0.835 Sum_probs=23.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWS 336 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~ 336 (567)
..||-|..++... .-..+.|. |||.||..|+..+.
T Consensus 12 ~~CpICle~~~~~-d~~~~p~~--CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEID-DINFFPCT--CGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTT-TTTCCSST--TSCCCCHHHHHHHT
T ss_pred CcCCccCccCccc-cccccccC--CCCCcCHHHHHHHH
Confidence 5799998877421 12223354 99999999987654
No 119
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=73.59 E-value=3.4 Score=42.63 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=31.5
Q ss_pred CCcccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCc
Q 008382 227 RKTKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKR 306 (567)
Q Consensus 227 ~~~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~ 306 (567)
.....||- |-.... ..+.-.|||.||..|.. .|.. .....||-|+.
T Consensus 330 ~~~~~C~I--Cle~~~-------~pv~lpCGH~FC~~Ci~------------~wl~-------------~~~~~CP~CR~ 375 (389)
T 2y1n_A 330 STFQLCKI--CAENDK-------DVKIEPCGHLMCTSCLT------------SWQE-------------SEGQGCPFCRC 375 (389)
T ss_dssp TSSSBCTT--TSSSBC-------CEEEETTCCEECHHHHH------------HHHH-------------HTCSBCTTTCC
T ss_pred CCCCCCCc--cCcCCC-------CeEEeCCCChhhHHHHH------------HHHh-------------cCCCCCCCCCC
Confidence 33457887 753321 12233899999999853 3322 12378999999
Q ss_pred ceee
Q 008382 307 PIEK 310 (567)
Q Consensus 307 ~IEK 310 (567)
+|..
T Consensus 376 ~i~~ 379 (389)
T 2y1n_A 376 EIKG 379 (389)
T ss_dssp BCCE
T ss_pred ccCC
Confidence 8874
No 120
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=73.19 E-value=0.86 Score=35.06 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=25.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+. +.++-. .|||.||+.|+..|....
T Consensus 16 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~~~ 50 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALLES 50 (74)
T ss_dssp GSCSSSCCCCT-----TCEECS-SSCCEECTTHHHHHHHHS
T ss_pred CCCcCCChHHh-----CCeEcC-CCCCHHHHHHHHHHHHhc
Confidence 57999987765 334432 399999999999987543
No 121
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=72.80 E-value=2.3 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.636 Sum_probs=21.6
Q ss_pred CcCCCCCCc-ceeecCCCCccccCCCCccch
Q 008382 298 SKPCPKCKR-PIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 298 tk~CPkC~~-~IEK~~GCnhm~C~~~C~~~F 327 (567)
...||.|+. .|.-+..=..+.|. .||..|
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~-~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCA-KCGYVI 34 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEES-SSCCBC
T ss_pred cEeCcCCCCcceEEcCCCCeEECc-ccCCcc
Confidence 468999988 78776666678887 676644
No 122
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=72.31 E-value=0.86 Score=37.18 Aligned_cols=35 Identities=20% Similarity=0.509 Sum_probs=27.0
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+.. .++.. .|||.||..|...|...+
T Consensus 23 ~~C~IC~~~~~~-----p~~~~-~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIP-QCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp TBCTTTCSBCSS-----EEECT-TTCCEEEHHHHHHHHTTC
T ss_pred CCcccCChhhCC-----cCEEC-CCCCHhhHHHHHHHHHCC
Confidence 689999887652 45554 599999999999887543
No 123
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.98 E-value=0.98 Score=33.76 Aligned_cols=32 Identities=25% Similarity=0.565 Sum_probs=24.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
..||-|...+. +.+. . .|||.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLC-----SPKQ-T-ECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEES-----SCCC-C-SSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhc-----CeeE-C-CCCCHHHHHHHHHHHH
Confidence 57999987765 2333 3 5999999999999874
No 124
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=71.53 E-value=1.7 Score=36.41 Aligned_cols=34 Identities=21% Similarity=0.524 Sum_probs=25.3
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.||-|...+. +.++- .|||.||..|+..|..++
T Consensus 16 ~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~ 49 (115)
T 3l11_A 16 CQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKA 49 (115)
T ss_dssp HBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTT
T ss_pred CCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHC
Confidence 47999987665 22333 499999999999987653
No 125
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=71.53 E-value=2.8 Score=35.11 Aligned_cols=47 Identities=28% Similarity=0.581 Sum_probs=30.3
Q ss_pred ccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCccee
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIE 309 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IE 309 (567)
..||- |...+. ..+...|||.||..|.. .|+.. ....||.|+.++.
T Consensus 24 ~~C~I--C~~~~~-------~p~~~~CgH~fC~~Ci~------------~~~~~-------------~~~~CP~Cr~~~~ 69 (116)
T 1rmd_A 24 ISCQI--CEHILA-------DPVETSCKHLFCRICIL------------RCLKV-------------MGSYCPSCRYPCF 69 (116)
T ss_dssp TBCTT--TCSBCS-------SEEECTTSCEEEHHHHH------------HHHHH-------------TCSBCTTTCCBCC
T ss_pred CCCCC--CCcHhc-------CcEEcCCCCcccHHHHH------------HHHhH-------------CcCcCCCCCCCCC
Confidence 36887 865442 12345899999999853 23221 1267999988876
Q ss_pred e
Q 008382 310 K 310 (567)
Q Consensus 310 K 310 (567)
.
T Consensus 70 ~ 70 (116)
T 1rmd_A 70 P 70 (116)
T ss_dssp G
T ss_pred H
Confidence 4
No 126
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=71.44 E-value=1 Score=34.79 Aligned_cols=33 Identities=12% Similarity=0.219 Sum_probs=25.6
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+. +.++- .|||.||..|...|-.+
T Consensus 9 ~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHH
Confidence 57999988765 23444 49999999999998764
No 127
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.34 E-value=24 Score=35.70 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=12.9
Q ss_pred hHHHHhHHHHHHhHHHHHHHHHHHH
Q 008382 456 QFFEYLQGEAESGLERLHQCAEKEL 480 (567)
Q Consensus 456 ~~fe~~Q~~le~~~e~L~~~le~~~ 480 (567)
+.|-..-.+||..++.|.+.+...+
T Consensus 109 n~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 109 NTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555554433
No 128
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.72 E-value=1.1 Score=32.28 Aligned_cols=32 Identities=22% Similarity=0.739 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|...+.. .+. . .|+|.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 16 ASCSVCLEYLKE-----PVI-I-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CBCSSSCCBCSS-----CCC-C-SSCCCCCHHHHHHHTT
T ss_pred CCCccCCcccCc-----cEe-C-CCCCccCHHHHHHHHH
Confidence 579999877753 233 3 4999999999999854
No 129
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.63 E-value=0.71 Score=36.13 Aligned_cols=33 Identities=27% Similarity=0.680 Sum_probs=24.3
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+.. .++- .|||.||..|+..|...
T Consensus 20 ~~C~IC~~~~~~-----p~~~--~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecv_A 20 VTCPICLELLTQ-----PLSL--DCGHSFCQACLTANHKK 52 (85)
T ss_dssp CCCTTTCSCCSS-----CBCC--SSSCCBCTTHHHHHHHH
T ss_pred CCCCCCCcccCC-----ceeC--CCCCHHHHHHHHHHHHH
Confidence 579999887652 2333 49999999999887544
No 130
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=70.01 E-value=2.6 Score=28.40 Aligned_cols=27 Identities=15% Similarity=0.460 Sum_probs=24.4
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..|+.++.+++ ++|. .|+...|+.|..
T Consensus 4 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 30 (42)
T 1fre_A 4 EKCSEHDERLK-------LYCK-DDGTLSCVICRD 30 (42)
T ss_dssp CCCCSSCSSCC-------CCCC-SSSSSSCCTTSS
T ss_pred ccchhhCCeee-------EEeC-CCCeEEeccCCC
Confidence 57999998888 9999 899999999975
No 131
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=69.94 E-value=1.2 Score=35.40 Aligned_cols=36 Identities=28% Similarity=0.669 Sum_probs=28.7
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
.-.||.|+....+..+-..+.|. .|++.|- ++.|..
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C~-~Cg~~~a---ggay~~ 62 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQCS-YCDYKFT---GGSYKP 62 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEET-TTCCEEE---CCSSSS
T ss_pred cCcCCCCCCcceeccCCCeEECC-CCCCEec---CCEecc
Confidence 46899999999998888899998 8988763 455554
No 132
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.81 E-value=2 Score=36.15 Aligned_cols=33 Identities=18% Similarity=0.528 Sum_probs=24.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|...+. +.++-. .|||.||+.|+..|..
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG 55 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc
Confidence 68999988775 334442 4999999999988864
No 133
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=69.69 E-value=1.2 Score=35.90 Aligned_cols=49 Identities=27% Similarity=0.623 Sum_probs=29.6
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
...||- |...+. .+...+.-.|+|.||..|.. .|+.. ...||-|+..+
T Consensus 40 ~~~C~I--C~~~~~----~~~~~~~l~C~H~Fh~~Ci~------------~wl~~--------------~~~CP~Cr~~~ 87 (91)
T 2l0b_A 40 EMCCPI--CCSEYV----KGDVATELPCHHYFHKPCVS------------IWLQK--------------SGTCPVCRCMF 87 (91)
T ss_dssp CSEETT--TTEECC----TTCEEEEETTTEEEEHHHHH------------HHHTT--------------TCBCTTTCCBS
T ss_pred CCCCcc--cChhhc----CCCcEEecCCCChHHHHHHH------------HHHHc--------------CCcCcCcCccC
Confidence 346776 754332 12222233899999999953 34321 15899999876
Q ss_pred e
Q 008382 309 E 309 (567)
Q Consensus 309 E 309 (567)
.
T Consensus 88 ~ 88 (91)
T 2l0b_A 88 P 88 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 134
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=69.62 E-value=1.8 Score=30.96 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=24.6
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..||.++.+++ ++|. .|+..+|+.|..
T Consensus 9 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~ 35 (53)
T 2did_A 9 SLCPQHHEALS-------LFCY-EDQEAVCLICAI 35 (53)
T ss_dssp CBCTTTCCBCC-------EEES-SSCSEECHHHHT
T ss_pred CcChhhCCeee-------EEeC-CCCeEEeccccC
Confidence 67999999888 9999 899999999974
No 135
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=69.11 E-value=2 Score=32.87 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=22.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.+++-..+...+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSR-QAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5799999999988878888887 666554
No 136
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=68.81 E-value=1.7 Score=30.44 Aligned_cols=26 Identities=23% Similarity=0.696 Sum_probs=23.5
Q ss_pred cCCCCCC-cceeecCCCCccccCCCCccchhhccc
Q 008382 299 KPCPKCK-RPIEKNQGCMHMTCSPPCKFEFCWLCL 332 (567)
Q Consensus 299 k~CPkC~-~~IEK~~GCnhm~C~~~C~~~FCw~C~ 332 (567)
..|+.+. .+++ ++|. .|+...||.|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~ 33 (48)
T 3ddt_A 7 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCK 33 (48)
T ss_dssp CBCSSSTTSBCC-------EEET-TTTEEECHHHH
T ss_pred CcCCCCCCcccc-------EEcC-CCCeeEccccc
Confidence 5799998 8888 9999 89999999996
No 137
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=68.81 E-value=1.3 Score=32.40 Aligned_cols=29 Identities=17% Similarity=0.545 Sum_probs=19.9
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccch
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
.+.||+|+..+--...-+.++|. +|++.+
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~-kCgyt~ 46 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG-RCGYTE 46 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT-TTCCCE
T ss_pred cccCcCCCCceeEeccCCEEECC-CCCCEE
Confidence 47899999744322334678898 888763
No 138
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=68.80 E-value=3.1 Score=37.49 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=21.9
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCccccccccccC
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCTEEA 268 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~~~~ 268 (567)
...||- |...+. ..+.+.||+.||..|...|
T Consensus 18 ~~~C~I--C~~~~~-------~pv~~~CgH~fC~~Ci~~~ 48 (170)
T 3hcs_A 18 KYECPI--CLMALR-------EAVQTPCGHRFCKACIIKS 48 (170)
T ss_dssp GGBCTT--TCSBCS-------SEEECTTSCEEEHHHHHHH
T ss_pred CCCCCC--CChhhc-------CcEECCCCCHHHHHHHHHH
Confidence 346887 876543 1256799999999997554
No 139
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=67.99 E-value=1.3 Score=33.17 Aligned_cols=34 Identities=26% Similarity=0.845 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
..||-|...+.. ..... +|||.||+.|...|...
T Consensus 6 ~~C~IC~~~~~~-----~~~~~-~C~H~fc~~Ci~~~~~~ 39 (68)
T 1chc_A 6 ERCPICLEDPSN-----YSMAL-PCLHAFCYVCITRWIRQ 39 (68)
T ss_dssp CCCSSCCSCCCS-----CEEET-TTTEEESTTHHHHHHHH
T ss_pred CCCeeCCccccC-----CcEec-CCCCeeHHHHHHHHHhC
Confidence 679999887652 12334 58888888888888643
No 140
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=67.35 E-value=3 Score=32.01 Aligned_cols=26 Identities=31% Similarity=0.671 Sum_probs=21.6
Q ss_pred cCCcc-ccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceee
Q 008382 255 LCSYN-FCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 310 (567)
Q Consensus 255 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK 310 (567)
.|||. ||..|...| +.||-|+.+|.+
T Consensus 41 pCgH~~~C~~C~~~~------------------------------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 41 PCGHLVTCKQCAEAV------------------------------DKCPMCYTVITF 67 (74)
T ss_dssp TTCCBCCCHHHHTTC------------------------------SBCTTTCCBCSE
T ss_pred CCCChhHHHHhhhcC------------------------------ccCCCcCcCccC
Confidence 89999 999996443 689999998874
No 141
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.03 E-value=11 Score=26.54 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
.+.|.++.++ +.++..|...|+..+||+++..+-.+.
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4557777665 889999999999999999998876554
No 142
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=67.02 E-value=3.2 Score=31.22 Aligned_cols=33 Identities=27% Similarity=0.638 Sum_probs=26.0
Q ss_pred CCcccccccccccccCCeeecCC-CCcccHhhHHHHH
Q 008382 138 ARELTCGICFDTYSCDKVVSAAC-GHPFCRACWRGYI 173 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~y~ 173 (567)
.+..-|.||.++ ..+.-+.| |..||..||+..-
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345679999987 34566789 7899999999875
No 143
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.75 E-value=1.4 Score=33.49 Aligned_cols=34 Identities=32% Similarity=0.739 Sum_probs=24.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
..||-|...+.. .++- .|+|.||+.|+..|...+
T Consensus 16 ~~C~IC~~~~~~-----~~~~--~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 16 PECAICLQTCVH-----PVSL--PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CBCSSSSSBCSS-----EEEE--TTTEEEEHHHHHHCTTCS
T ss_pred CCCccCCcccCC-----CEEc--cCCCHHHHHHHHHHHHCC
Confidence 579999876642 2333 499999999999886543
No 144
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=65.96 E-value=7.1 Score=30.15 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
+.|.++.++ +.+.+.|...|+..+||+++.++.++.+
T Consensus 31 e~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~~ 67 (73)
T 1vg5_A 31 EQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMSQ 67 (73)
T ss_dssp HHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 345666664 8999999999999999999988876653
No 145
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.73 E-value=2.4 Score=30.29 Aligned_cols=28 Identities=21% Similarity=0.583 Sum_probs=17.8
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFE 326 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~ 326 (567)
.+.||+|+..+.-...=+.+.|. .||+.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~-kCG~t 46 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG-KCGYT 46 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS-SSCCE
T ss_pred cccCCCCCCceEEecCCCeEECC-CCCCE
Confidence 37899998744322222667887 78764
No 146
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=65.60 E-value=2.5 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.621 Sum_probs=24.2
Q ss_pred cCCCCC-CcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 9 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 36 (64)
T 2d8u_A 9 PMCKEHEDEKIN-------IYCL-TCEVPTCSMCKV 36 (64)
T ss_dssp CCCSSCTTCCCC-------SEES-SSCCCCCSHHHH
T ss_pred CcCcCcCCCccc-------eEcC-cCCceeCccccC
Confidence 579999 88888 9999 899999999963
No 147
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.25 E-value=1.4 Score=34.35 Aligned_cols=33 Identities=18% Similarity=0.476 Sum_probs=25.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
-.||-|...+.. .++ . .|||.||+.|+..|...
T Consensus 16 ~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 16 FRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFRA 48 (81)
T ss_dssp SBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHHH
T ss_pred CCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHHC
Confidence 579999887752 344 3 59999999999988654
No 148
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.72 E-value=2.5 Score=31.09 Aligned_cols=27 Identities=22% Similarity=0.642 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..|+.++.+++ ++|. .|+..+|+.|..
T Consensus 15 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 41 (59)
T 2yrg_A 15 DHCARHGEKLL-------LFCQ-EDGKVICWLCER 41 (59)
T ss_dssp SBCTTTCCBCC-------EEET-TTCSEECHHHHT
T ss_pred ccChhhCceee-------eecC-CCCcEEecccCC
Confidence 57999999888 9999 899999999975
No 149
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=64.63 E-value=11 Score=25.58 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
+.|.++.+ ++.+++.|...|+..+||++.-.+-.+.
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45777777 4899999999999999999887765543
No 150
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=63.86 E-value=24 Score=25.91 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhh
Q 008382 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAW 114 (567)
Q Consensus 77 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~ 114 (567)
.+.+.|..++...++...-+...|...+||-++.+..|
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F 43 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAF 43 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56788999999999999999999999999999988876
No 151
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=62.84 E-value=2.7 Score=34.97 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=23.3
Q ss_pred cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceeec
Q 008382 255 LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKN 311 (567)
Q Consensus 255 ~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK~ 311 (567)
.|+|.||..|.. .|+..... .....||-|+..+.+.
T Consensus 60 ~C~H~Fh~~Ci~------------~wl~~~~~---------~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 60 KCSHAFHLLCLL------------AMYCNGNK---------DGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SSCCEECHHHHH------------HHHHHTCC---------SSCCBCTTTCCBSSSC
T ss_pred CCCCcccHHHHH------------HHHHcccC---------CCCCcCCCCCCccCCC
Confidence 799999999963 34321100 1126899999887754
No 152
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=62.49 E-value=1.4 Score=35.31 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=24.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|...+. +.++-. .|||.||+.|+..|-.
T Consensus 14 ~~C~IC~~~~~-----~p~~~~-~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIP-CCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECT-TTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECC-CCCCHHHHHHHHHHHH
Confidence 46999987665 234432 3999999999988754
No 153
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=61.74 E-value=2.7 Score=32.16 Aligned_cols=31 Identities=26% Similarity=0.742 Sum_probs=26.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
..||.++.+++ ++|. .|+..+|+.|.. ..|.
T Consensus 19 ~~C~~H~e~l~-------lfC~-~d~~~iC~~C~~--~~H~ 49 (72)
T 2csv_A 19 RKCPVHGKTME-------LFCQ-TDQTCICYLCMF--QEHK 49 (72)
T ss_dssp CBCTTTCCBCC-------EEES-SSCCEECHHHHH--TTTS
T ss_pred CcCcccCCceE-------EEeC-CCCeEEccccCC--CCCC
Confidence 68999999888 9999 899999999975 5555
No 154
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=61.48 E-value=1.8 Score=38.00 Aligned_cols=32 Identities=19% Similarity=0.644 Sum_probs=25.3
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|...+. +.++. .|||.||..|+..|..
T Consensus 32 ~~C~IC~~~~~-----~pv~~--~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA--QCGHRYCSFCLASILS 63 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC--TTSCEEEHHHHHHHGG
T ss_pred cCCCCCChhhc-----CcEEC--CCCCccCHHHHHHHHh
Confidence 57999988765 33554 4999999999998865
No 155
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=60.51 E-value=6.7 Score=38.35 Aligned_cols=43 Identities=9% Similarity=0.298 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcChH
Q 008382 77 QQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADED 119 (567)
Q Consensus 77 ~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~~ 119 (567)
.+.+.|.+-..+.+.++..|...|..++||.+..++.||.+|.
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~~~ 56 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDKEI 56 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhCcc
Confidence 3566799999999999999999999999999999999997654
No 156
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.45 E-value=1.9 Score=32.39 Aligned_cols=31 Identities=32% Similarity=0.870 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
..||-|...+.. +. . +|+|.||+.|+..|..
T Consensus 16 ~~C~IC~~~~~~------~~-~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 16 EECCICMDGRAD------LI-L-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCSSSCCSCCS------EE-E-TTTEEECHHHHHHSSC
T ss_pred CCCeeCCcCccC------cc-c-CCCCcccHHHHHHHHH
Confidence 579999877653 33 3 5999999999998865
No 157
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=58.71 E-value=11 Score=29.87 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 81 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.|.++.++ +.++..|+..|+..+||+++.++-.+.+
T Consensus 32 ~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 32 SINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45566554 8999999999999999999988876654
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=58.32 E-value=7.7 Score=37.41 Aligned_cols=28 Identities=0% Similarity=-0.263 Sum_probs=17.6
Q ss_pred cccCCCCCCCCceecccCCCCceeeecCCcccccccc
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCT 265 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 265 (567)
...||- |...+. ..|+-.||+.||..|.
T Consensus 208 ~~~c~i--~~~~~~-------dPv~~~~gh~f~~~~i 235 (281)
T 2c2l_A 208 YLCGKI--SFELMR-------EPCITPSGITYDRKDI 235 (281)
T ss_dssp TTBCTT--TCSBCS-------SEEECSSCCEEETTHH
T ss_pred ccCCcC--cCCHhc-------CCeECCCCCEECHHHH
Confidence 456766 654432 1233479999999885
No 159
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=56.56 E-value=3.5 Score=28.94 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=26.4
Q ss_pred cCCCCC-CcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
..||.+ +.++. ++|. .|+..+|+.|.. ..|.
T Consensus 7 ~~C~~H~~e~l~-------lfC~-~~~~~iC~~C~~--~~H~ 38 (50)
T 2yvr_A 7 VYCNVHKHEPLV-------LFCE-SCDTLTCRDCQL--NAHK 38 (50)
T ss_dssp CBCSSSTTCBCC-------EEET-TTTEEECHHHHH--TTTT
T ss_pred CcCcCCCCCCEE-------EEeC-CCCEEEecccCC--CcCC
Confidence 579999 88888 9999 899999999975 3555
No 160
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.88 E-value=2.8 Score=30.60 Aligned_cols=27 Identities=22% Similarity=0.597 Sum_probs=24.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..|+.++.+++ ++|. .|+..+|+.|..
T Consensus 19 ~~C~~H~e~L~-------lfC~-~d~~~iC~~C~~ 45 (57)
T 2egm_A 19 GICPKHQEALK-------LFCE-VDEEAICVVCRE 45 (57)
T ss_dssp SBCTTTCCBCC-------EEET-TTTEEECHHHHH
T ss_pred CcChhhCceee-------EEcC-CCCcEEecccCC
Confidence 57999999888 9999 899999999974
No 161
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.23 E-value=17 Score=26.91 Aligned_cols=37 Identities=30% Similarity=0.325 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
+.|.++.+ ++.+...|+..|+..+||++..++-.+.+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34666666 48999999999999999999888776654
No 162
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=53.82 E-value=4.1 Score=32.13 Aligned_cols=41 Identities=20% Similarity=0.639 Sum_probs=25.9
Q ss_pred HHHHHhc-CcCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 291 MNWILAN-SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 291 ~~wi~~n-tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
..|+... ...|+.|+....-. --.-.|+ .||.-||..|...
T Consensus 11 ~~W~~d~~~~~C~~C~~~Fs~~--~RrHHCR-~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 11 HAWLKDDEATHCRQCEKEFSIS--RRKHHCR-NCGHIFCNTCSSN 52 (82)
T ss_dssp ----CCCCCCBCTTTCCBCBTT--BCCEECT-TTCCEECSGGGCE
T ss_pred CccccCccCCcccCcCCcccCc--cccccCC-CCCCEEChHHhCC
Confidence 4576543 56899999876411 1223588 8999999999763
No 163
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=52.47 E-value=31 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.134 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 76 CQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 76 ~~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
..+.+.|..++...++...-+...|...+||-++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 45678899999999999999999999999999998887643
No 164
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=51.16 E-value=5.4 Score=31.28 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=24.1
Q ss_pred cCCCCC-CcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKC-KRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC-~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..||.+ +.+++ ++|. .|+...|+.|..
T Consensus 19 ~~C~~H~~e~l~-------lfC~-~d~~~iC~~C~~ 46 (84)
T 2dja_A 19 ITCLDHENEKVN-------MYCV-SDDQLICALCKL 46 (84)
T ss_dssp CCCSSCSSSCCC-------EEET-TTTEEECHHHHH
T ss_pred CcCcCcCCcccc-------EEcC-CCCceEcccCcC
Confidence 579999 68888 9999 899999999974
No 165
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=51.07 E-value=6.8 Score=28.72 Aligned_cols=38 Identities=34% Similarity=0.738 Sum_probs=29.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccccccCC
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~H~ 339 (567)
-.|+-|.+. .-.+||-|. |. .|+..||-+|++.+.--.
T Consensus 10 ~~C~iC~KT-KFADG~Gh~-C~-yCk~r~CaRCGg~v~lr~ 47 (62)
T 2a20_A 10 PTCGICHKT-KFADGCGHN-CS-YCQTKFCARCGGRVSLRS 47 (62)
T ss_dssp CCCSSSSCS-CCCSSCCEE-BT-TTCCEECTTSEEEEESST
T ss_pred chhhhhccc-eeccCCCcc-cc-ccCCeeecccCCEeeecC
Confidence 578888764 225899985 76 799999999999876433
No 166
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=51.06 E-value=30 Score=25.27 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 76 CQQEDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 76 ~~~~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
......|.++.++=..+...+...|+..+||+++.++..+.++
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gnve~Ave~L~~~~ 57 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGSVQGALDSLLNGD 57 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4456678888877334677879999999999999998876543
No 167
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=50.55 E-value=6.3 Score=29.53 Aligned_cols=28 Identities=21% Similarity=0.679 Sum_probs=21.2
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 331 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C 331 (567)
+.+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVGLT----GFMCR--CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCCTT----CEECS--SSCEECTTT
T ss_pred CCcChhhCCccCcc----CEEee--cCCEecccc
Confidence 36899999877633 26797 999999753
No 168
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=49.45 E-value=33 Score=24.43 Aligned_cols=41 Identities=5% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 76 CQQEDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 76 ~~~~~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
....+.|.++.++ +. +...+...|+..+||+++.++..+.+
T Consensus 9 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 9 VRFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 3456678888776 56 99999999999999999988876544
No 169
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=48.70 E-value=7.5 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.612 Sum_probs=19.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.+++-..+=..+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICK-GDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 4799999998866554557776 565444
No 170
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=48.68 E-value=8.8 Score=33.29 Aligned_cols=30 Identities=13% Similarity=0.466 Sum_probs=22.7
Q ss_pred cCcCCCCCCcceee-c---CCCCccccCCCCccch
Q 008382 297 NSKPCPKCKRPIEK-N---QGCMHMTCSPPCKFEF 327 (567)
Q Consensus 297 ntk~CPkC~~~IEK-~---~GCnhm~C~~~C~~~F 327 (567)
..+.||.|+.++-- . .+.+.+.|+ +|++.+
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~Cr-tCgY~~ 56 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 56 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCS-SSCCBC
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECC-CCCCcE
Confidence 34899999987642 2 368889999 898865
No 171
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=48.60 E-value=9.7 Score=31.97 Aligned_cols=29 Identities=14% Similarity=0.532 Sum_probs=22.8
Q ss_pred CcCCCCCCcceeec----CCCCccccCCCCccch
Q 008382 298 SKPCPKCKRPIEKN----QGCMHMTCSPPCKFEF 327 (567)
Q Consensus 298 tk~CPkC~~~IEK~----~GCnhm~C~~~C~~~F 327 (567)
.+-||.|+.++.-. .|.+.+.|+ .|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~-~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACR-NCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECS-SSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECC-CCCCeE
Confidence 47899999877532 368899999 899866
No 172
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=48.57 E-value=30 Score=24.53 Aligned_cols=39 Identities=8% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 79 EDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 79 ~~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
...|.++.++ +. +...+...|+..+||+++.++..+.+|
T Consensus 13 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~~~ 52 (52)
T 2jy5_A 13 QQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLGSS 52 (52)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHhCc
Confidence 3467777776 66 999999999999999999988766543
No 173
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=48.32 E-value=8.1 Score=29.57 Aligned_cols=28 Identities=25% Similarity=0.636 Sum_probs=20.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.+++-+.+=..+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCN-ADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEET-TTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcC-CCCcee
Confidence 5799999999876555567786 565554
No 174
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=47.82 E-value=11 Score=38.11 Aligned_cols=26 Identities=27% Similarity=0.751 Sum_probs=21.8
Q ss_pred cCCcc-ccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceee
Q 008382 255 LCSYN-FCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEK 310 (567)
Q Consensus 255 ~C~~~-fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK 310 (567)
.|||. ||..|...+ ..||-|+.+|.+
T Consensus 312 pCgH~~fC~~C~~~~------------------------------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 312 PCGHLVVCQECAPSL------------------------------RKCPICRGIIKG 338 (345)
T ss_dssp TTCCEEECTTTGGGC------------------------------SBCTTTCCBCCE
T ss_pred CCCChhHhHHHHhcC------------------------------CcCCCCCCCccC
Confidence 89999 999997532 589999999874
No 175
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=47.75 E-value=6.4 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.745 Sum_probs=20.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWL 330 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (567)
.+|..|++.++..+ +.|+ |+..||-.
T Consensus 26 nRC~~CrKkvgL~g----f~Cr--Cg~~FCs~ 51 (74)
T 1wfl_A 26 NRCFMCRKKVGLTG----FDCR--CGNLFCGL 51 (74)
T ss_dssp TBCSSSCCBCGGGC----EECT--TSCEECSS
T ss_pred CcChhhCCcccccC----eecC--CCCEechh
Confidence 58999999877542 6798 99999964
No 176
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=47.56 E-value=6.9 Score=29.35 Aligned_cols=28 Identities=21% Similarity=0.618 Sum_probs=20.7
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 331 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C 331 (567)
+.+|..|++.+... -+.|+ |+..||-.-
T Consensus 15 ~~rC~~C~kkvgl~----~f~Cr--Cg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKCK--CGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCTTS----CEECT--TSCEECSSS
T ss_pred CCcChhhCCccccc----CeEee--cCCEecccC
Confidence 36899999876632 26797 999999643
No 177
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.56 E-value=9 Score=29.24 Aligned_cols=28 Identities=18% Similarity=0.519 Sum_probs=19.7
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.+++-..+=..+.|. .|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~-~cg~~Y 36 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISK-GAGLAY 36 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEET-TTTEEE
T ss_pred eeCCCCCCcCeEeCCCCEEEcC-CCCcEe
Confidence 5899999998865544557776 565444
No 178
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=46.14 E-value=30 Score=27.60 Aligned_cols=58 Identities=24% Similarity=0.682 Sum_probs=38.4
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcce
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPI 308 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~I 308 (567)
..|-. |+--|-.. ..+...|-| .|++..|..|. ++. +....+-||+|+.+.
T Consensus 17 qiCqi--CGD~VG~~-~~Ge~FVAC~eC~FPvCrpCy----------EYE---------------rkeG~q~CpqCktrY 68 (93)
T 1weo_A 17 QFCEI--CGDQIGLT-VEGDLFVACNECGFPACRPCY----------EYE---------------RREGTQNCPQCKTRY 68 (93)
T ss_dssp CBCSS--SCCBCCBC-SSSSBCCSCSSSCCCCCHHHH----------HHH---------------HHTSCSSCTTTCCCC
T ss_pred Ccccc--ccCccccC-CCCCEEEeeeccCChhhHHHH----------HHH---------------HhccCccccccCCcc
Confidence 45655 77666554 345677889 89999998774 221 112348999999988
Q ss_pred eecCCCC
Q 008382 309 EKNQGCM 315 (567)
Q Consensus 309 EK~~GCn 315 (567)
.+..|+-
T Consensus 69 kr~kgsp 75 (93)
T 1weo_A 69 KRLRGSP 75 (93)
T ss_dssp CCCTTCC
T ss_pred ccccCCC
Confidence 7665554
No 179
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=46.09 E-value=2e+02 Score=30.44 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=14.2
Q ss_pred hHHHHhHHHHHHhHHHHHHHHHHHHHHhh
Q 008382 456 QFFEYLQGEAESGLERLHQCAEKELLQFL 484 (567)
Q Consensus 456 ~~fe~~Q~~le~~~e~L~~~le~~~~~~~ 484 (567)
..+.-||..|+.++..+. .||.+|..-+
T Consensus 131 snIrvLQsnLedq~~kIQ-RLEvDIdiqi 158 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMK-RLEVDIDIKI 158 (562)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 444445555555555443 3566665433
No 180
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=45.08 E-value=30 Score=26.51 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 81 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
.|.++.+ ++.+...|+..|+..+||++.-++-.+.++
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 32 SVDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 3555554 489999999999999999999887766543
No 181
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=44.75 E-value=1.9e+02 Score=26.64 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHcccc
Q 008382 509 NYFENLVRALENGLA 523 (567)
Q Consensus 509 ~~~~~~~~~~e~~l~ 523 (567)
+|+.+|.+.|++=++
T Consensus 191 ~y~~kl~~~i~~~~~ 205 (207)
T 3bvo_A 191 RYFSNIEEKIKLKKI 205 (207)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 788888888876443
No 182
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.23 E-value=10 Score=32.49 Aligned_cols=40 Identities=20% Similarity=0.554 Sum_probs=27.2
Q ss_pred HHHHh-cCcCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 292 NWILA-NSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 292 ~wi~~-ntk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
.|+.. ....|+.|+....-. --.-.|+ .||.-||..|...
T Consensus 62 ~W~~d~~~~~C~~C~~~Fs~~--~RrHHCR-~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 62 KWAEDNEVQNCMACGKGFSVT--VRRHHCR-QCGNIFCAECSAK 102 (125)
T ss_dssp CCCCGGGCCBCTTTCCBCCSS--SCCEECT-TTCCEECGGGSCE
T ss_pred ccccCCCCCCCcCcCCccccc--cccccCC-CCCeEEChHHhCC
Confidence 45543 256799999875421 1224588 8999999999753
No 183
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=44.06 E-value=22 Score=26.42 Aligned_cols=36 Identities=6% Similarity=0.149 Sum_probs=28.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
+.|.++.+ ++.+...|...|+..+||++..++-.+.
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44666665 5899999999999999999988876554
No 184
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.99 E-value=6.4 Score=30.69 Aligned_cols=18 Identities=22% Similarity=0.765 Sum_probs=15.1
Q ss_pred CCccchhhccccccccCC
Q 008382 322 PCKFEFCWLCLGAWSDHG 339 (567)
Q Consensus 322 ~C~~~FCw~C~~~~~~H~ 339 (567)
.|+|.|+..|+..|-..+
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC
T ss_pred CCCCccChHHHHHHHHhC
Confidence 499999999999997544
No 185
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.57 E-value=1.5e+02 Score=31.44 Aligned_cols=16 Identities=6% Similarity=-0.058 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 008382 493 FNDFRTKLAGLTSVTK 508 (567)
Q Consensus 493 ~~~~~~~~~~l~~~~~ 508 (567)
+.+++.+|..|..-+.
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3345555555544443
No 186
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=42.16 E-value=8.5 Score=32.75 Aligned_cols=33 Identities=27% Similarity=0.695 Sum_probs=23.5
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
..|..|+...--.. -.-.|+ .||.-||..|...
T Consensus 20 ~~C~~C~~~Fs~~~--RkHHCR-~CG~ifC~~Cs~~ 52 (120)
T 1y02_A 20 PSCKSCGAHFANTA--RKQTCL-DCKKNFCMTCSSQ 52 (120)
T ss_dssp CCCTTTCCCCSSGG--GCEECT-TTCCEECGGGEEC
T ss_pred CcccCcCCcccccc--ccccCC-CCCCeeCHHHhCC
Confidence 67999988654211 123588 8999999999753
No 187
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=41.67 E-value=58 Score=22.44 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 76 CQQEDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 76 ~~~~~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
......|.++.++ +. +...+...|+..+||+++.++..+.
T Consensus 5 ~~~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 5 ERYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp HHTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 3456678888776 55 5677789999999999998887653
No 188
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.53 E-value=4.2 Score=32.79 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=25.6
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|..++. +.++-. .|||.||..|...|-.
T Consensus 8 ~~CPI~~~~~~-----dPV~~~-~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNK-VCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEES-SSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcC-CCCCeecHHHHHHHHH
Confidence 46999988776 456653 4999999999998754
No 189
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=41.42 E-value=9.7 Score=30.76 Aligned_cols=48 Identities=23% Similarity=0.530 Sum_probs=34.4
Q ss_pred CCcccccccccccccCCeeecCC-CCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchh
Q 008382 138 ARELTCGICFDTYSCDKVVSAAC-GHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQD 200 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l~C-gH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~ 200 (567)
-+.+.|..|+-.. ... +.| .|+.|..|+...+.. .-+|| -|...++..
T Consensus 26 ~G~~nCKsCWf~~--k~L--V~C~dHYLCl~CLtlmL~~---------SdrCp--IC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFEN--KGL--VECNNHYLCLNCLTLLLSV---------SNRCP--ICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCC--SSE--EECSSCEEEHHHHHHTCSS---------SSEET--TTTEECCCC
T ss_pred cCcccChhhcccc--CCe--eeecchhhHHHHHHHHHhh---------ccCCc--ccCCcCCcc
Confidence 3568899999754 333 345 699999999987643 35798 588877654
No 190
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.04 E-value=2.6e+02 Score=28.32 Aligned_cols=34 Identities=12% Similarity=-0.137 Sum_probs=16.5
Q ss_pred HHHHHHhcccceeecccCccchhhhhHHHHhHHHHHHh
Q 008382 431 VECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESG 468 (567)
Q Consensus 431 ~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~le~~ 468 (567)
.-||+.=+-|++-++=..- -.+..+.+|++|+..
T Consensus 158 d~c~~~C~~sC~~~l~~~v----D~e~ye~qqKQL~qv 191 (390)
T 1deq_A 158 DIKIRSCKGSCSRALEHKV----DLEDYKNQQKQLEQV 191 (390)
T ss_pred HHHhcccccccchhhhhhc----cHHHHHHHHHHHHhh
Confidence 4455555555555442210 134556666665443
No 191
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=40.67 E-value=12 Score=28.36 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=20.2
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.+++-...=+.+.|. .|+..|
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~-~c~~~Y 38 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNE-RLNLAY 38 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEET-TTTEEE
T ss_pred hCCCCCCCcCeEeCCCCEEEcC-CCCccc
Confidence 5799999998866554557777 666554
No 192
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.13 E-value=9.6 Score=35.89 Aligned_cols=33 Identities=21% Similarity=0.594 Sum_probs=23.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
..|+.|+...--. --.-.|+ .||.-||..|...
T Consensus 162 ~~C~~C~~~F~~~--~rrhhCr-~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 162 RVCHRCRVEFTFT--NRKHHCR-NCGQVFCGQCTAK 194 (220)
T ss_dssp SBCTTTCCBCCSS--SCCEECT-TTCCEECSTTSCE
T ss_pred CccCCCCCccCCc--ccccccC-CcCCEEChHHhCC
Confidence 6899998865421 1224588 8999999999763
No 193
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=39.42 E-value=6.2 Score=33.44 Aligned_cols=25 Identities=20% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCCCccccCCCCccchhhccccccccC
Q 008382 312 QGCMHMTCSPPCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 312 ~GCnhm~C~~~C~~~FCw~C~~~~~~H 338 (567)
+.|.-+.- .|+|.|+..|...|-..
T Consensus 75 ~~~~v~~~--~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 75 EECTVAWG--VCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ---------------------------
T ss_pred cccccccC--CcCceEcHHHHHHHHHc
Confidence 44554544 49999999999999654
No 194
>1odh_A MGCM1; transcription factor/DNA, transcription factor, DNA-binding domain, protein/DNA complex; 2.85A {Mus musculus} SCOP: d.239.1.1
Probab=39.31 E-value=24 Score=31.27 Aligned_cols=35 Identities=26% Similarity=0.635 Sum_probs=23.7
Q ss_pred CCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcceeecCCCCccccCCCCc
Q 008382 269 HRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCSPPCK 324 (567)
Q Consensus 269 H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~IEK~~GCnhm~C~~~C~ 324 (567)
=+|..|+...+- ..+ |.||+|.-+++ ++-|+..||
T Consensus 96 lRPAicdkAR~K----------Qq~-----k~CpnC~g~L~------~~~Crgh~G 130 (174)
T 1odh_A 96 LRPAICDKARQK----------QQR-----KSCPNCNGPLK------LIPCRGHGG 130 (174)
T ss_dssp ECCCSSHHHHHH----------HHH-----SBCSSSCCBEE------EECCCTBTT
T ss_pred echHHHHHHHHH----------hhc-----CCCCCCCccee------eEeccCcCC
Confidence 368889876541 112 99999998887 577873343
No 195
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=38.26 E-value=16 Score=29.29 Aligned_cols=35 Identities=20% Similarity=0.495 Sum_probs=24.8
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcccccc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAW 335 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~ 335 (567)
...|..|+....-. =-.-.|+ .||.-||..|....
T Consensus 20 ~~~C~~C~~~F~~~--~RrhhCr-~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 20 APNCMNCQVKFTFT--KRRHHCR-ACGKVFCGVCCNRK 54 (90)
T ss_dssp CCBCTTTCCBCCSS--SCCEECT-TTCCEECGGGSCEE
T ss_pred CCcCcCCCCcccch--hhCcccc-CCCCEECCcccCCe
Confidence 46799998865421 1124588 89999999998654
No 196
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=38.16 E-value=36 Score=24.42 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 79 EDDITKVSTVLSI-SRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 79 ~~~i~~v~~il~i-~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.+.|.++.++ +. ....+...|+..+||+++.++..+..
T Consensus 10 ~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 10 QVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 3457777776 56 55556899999999999998876654
No 197
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=37.31 E-value=49 Score=26.17 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
.+.|.++.+ ++.++..|+..|+..+|+++..++-.+..+
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h~ 60 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEKK 60 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTTS
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHCc
Confidence 456777776 499999999999999999999887766543
No 198
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=36.95 E-value=11 Score=32.00 Aligned_cols=29 Identities=14% Similarity=0.470 Sum_probs=22.1
Q ss_pred CcCCCCCCcceeec----CCCCccccCCCCccch
Q 008382 298 SKPCPKCKRPIEKN----QGCMHMTCSPPCKFEF 327 (567)
Q Consensus 298 tk~CPkC~~~IEK~----~GCnhm~C~~~C~~~F 327 (567)
.+-||.|+.++.-. .+-+.+.|+ .|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~-~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECR-TCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECS-SSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECC-cCCCee
Confidence 37899999776632 667889998 898865
No 199
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=36.20 E-value=13 Score=29.44 Aligned_cols=29 Identities=24% Similarity=0.537 Sum_probs=20.9
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLC 331 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C 331 (567)
..+|..|++.+-.. +-+.|+ |+..||-.=
T Consensus 25 ~~rC~~C~kkvgl~---~~f~Cr--Cg~~FC~~H 53 (85)
T 1wff_A 25 MKHCFLCGKKTGLA---TSFECR--CGNNFCASH 53 (85)
T ss_dssp CCBCSSSCCBCSSS---SCEECT--TCCEECTTT
T ss_pred CccchhhCCeeccc---CCeEcC--CCCEecccC
Confidence 36899998765532 247897 999999653
No 200
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=36.04 E-value=12 Score=29.84 Aligned_cols=33 Identities=24% Similarity=0.482 Sum_probs=23.2
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
..|+.|+....-. --.-.|+ .||.-||..|...
T Consensus 10 ~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 10 SRCYGCAVKFTLF--KKEYGCK-NCGRAFCNGCLSF 42 (88)
T ss_dssp SBCTTTCCBCCSS--SCEEECS-SSCCEEETTTSCE
T ss_pred CCCcCcCCcccCc--cccccCC-CCCCEEChhHcCC
Confidence 6788888765421 1123588 8999999999753
No 201
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.92 E-value=15 Score=28.98 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=23.6
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
...|+.|+....-. =-.-.|+ .||.-||..|..
T Consensus 14 ~~~C~~C~~~F~~~--~RrHHCR-~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 14 FGNCTGCSATFSVL--KKRRSCS-NCGNSFCSRCCS 46 (84)
T ss_dssp CSSCSSSCCCCCSS--SCCEECS-SSCCEECTTTSC
T ss_pred CCcCcCcCCccccc--hhhhhhc-CCCcEEChhhcC
Confidence 36799998875311 1123588 899999999975
No 202
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=35.61 E-value=59 Score=25.01 Aligned_cols=39 Identities=5% Similarity=0.039 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.+.|.++.++=..+...+...|+..+||+++.++..+..
T Consensus 30 e~qi~qL~eMGF~dr~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 30 QQELEELKALGFANRDANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 446777777633467888899999999999998876653
No 203
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=35.52 E-value=17 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.605 Sum_probs=20.2
Q ss_pred cCCCCCCcceeecCCCCccccCCCCcc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKF 325 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~ 325 (567)
-.||+|+.++.+.+ ++|.|. .|+.
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp-~~g~ 164 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCP-ECGR 164 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECS-SSCC
T ss_pred ecccccCCceEECC--CEEECC-CCCC
Confidence 47999999998876 999997 7864
No 204
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=35.48 E-value=15 Score=31.43 Aligned_cols=29 Identities=28% Similarity=0.905 Sum_probs=19.7
Q ss_pred cCcCCCCCCcceeecCCCCccccCCCCccch
Q 008382 297 NSKPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 297 ntk~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
+.-+||+|+...-=..|=+ ..|. .|+++|
T Consensus 26 ~lP~CP~C~seytYeDg~l-~vCP-eC~hEW 54 (138)
T 2akl_A 26 TLPPCPQCNSEYTYEDGAL-LVCP-ECAHEW 54 (138)
T ss_dssp CSCCCTTTCCCCCEECSSS-EEET-TTTEEE
T ss_pred cCCCCCCCCCcceEecCCe-EECC-cccccc
Confidence 4578999987665555554 6676 676665
No 205
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.01 E-value=23 Score=29.58 Aligned_cols=31 Identities=16% Similarity=0.526 Sum_probs=22.1
Q ss_pred CcccCCCCCCCCceecccC--CCCceeee-cCCccc
Q 008382 228 KTKWCPAPGCEHAIDFAAG--SGNFDVSC-LCSYNF 260 (567)
Q Consensus 228 ~~~~CP~~~C~~~i~~~~~--~~~~~v~C-~C~~~f 260 (567)
.+.+||. |++.+..... .+...+.| .|++.+
T Consensus 3 ~m~FCp~--Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 3 NFQYCIE--CNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCCSS--SCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred cceeCcC--CCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 3679998 9998877643 23456788 888765
No 206
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=34.63 E-value=31 Score=27.50 Aligned_cols=37 Identities=22% Similarity=0.561 Sum_probs=25.4
Q ss_pred CCCCcccccccccccccC--CeeecCCCCcccHhhHHHH
Q 008382 136 SNARELTCGICFDTYSCD--KVVSAACGHPFCRACWRGY 172 (567)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 172 (567)
+......|.+|...|... .-.--.||+.||..|....
T Consensus 16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~ 54 (90)
T 3t7l_A 16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK 54 (90)
T ss_dssp CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence 344456799999887432 1223469999999997654
No 207
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.29 E-value=13 Score=28.73 Aligned_cols=27 Identities=22% Similarity=0.709 Sum_probs=20.5
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWL 330 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (567)
..+|..|++.+... -+.|+ |+..||-.
T Consensus 25 ~~RC~~C~kkvgL~----~f~Cr--Cg~~FCs~ 51 (74)
T 1wfp_A 25 ATRCLSCNKKVGVT----GFKCR--CGSTFCGT 51 (74)
T ss_dssp CCBCSSSCCBCTTT----CEECT--TSCEECTT
T ss_pred CccchhhcCccccc----ceEec--cCCEeccc
Confidence 36899998776643 37797 99999964
No 208
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=34.18 E-value=12 Score=29.46 Aligned_cols=29 Identities=31% Similarity=0.687 Sum_probs=21.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCc--cchhhccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCK--FEFCWLCLGAWS 336 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~--~~FCw~C~~~~~ 336 (567)
-.||.|+.++++ |. .|| -.||-.|.+-.+
T Consensus 32 afCPeCgq~Le~--------lk-ACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 32 ALCPDCRQPLQV--------LK-ACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp EECSSSCSCCCE--------EE-ETTEEEECCTTTTCCCC
T ss_pred ccCcchhhHHHH--------HH-hcCCcCeeeccCCCEee
Confidence 379999999995 55 576 578888876554
No 209
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=34.16 E-value=14 Score=27.24 Aligned_cols=36 Identities=22% Similarity=0.733 Sum_probs=24.5
Q ss_pred ccCCCCCCCCceecccCCCCceeee-cCCccccccccccCCCCC
Q 008382 230 KWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTEEAHRPV 272 (567)
Q Consensus 230 ~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~~~H~p~ 272 (567)
..|-+ |...+. ......| .|+..||..|-.-.|..+
T Consensus 16 ~~C~~--C~~~~~-----~~~~y~C~~C~~~FC~dCD~fiHe~L 52 (59)
T 1z60_A 16 RFCYG--CQGELK-----DQHVYVCAVCQNVFCVDCDVFVHDSL 52 (59)
T ss_dssp CEETT--TTEECT-----TSEEECCTTTTCCBCHHHHHTTTTTS
T ss_pred Ccccc--cCcccC-----CCccEECCccCcCcccchhHHHHhhc
Confidence 35755 776542 1123679 999999999987778543
No 210
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=34.02 E-value=17 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.424 Sum_probs=22.9
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
..|..|+....-.. -.-.|+ .||.-||..|..
T Consensus 12 ~~C~~C~~~F~~~~--RrHHCR-~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 12 DACMICSKKFSLLN--RKHHCR-SCGGVFCQEHSS 43 (73)
T ss_dssp SBCTTTCCBCBTTB--CCEECT-TTCCEECGGGSC
T ss_pred CcccCCCCccCCcc--ccccCC-CCCEEEcccccC
Confidence 57999988654211 124588 899999999975
No 211
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=33.93 E-value=55 Score=24.27 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-ChhhhHHhhhcC
Q 008382 81 DITKVSTVLSISRVDASILLRHYNW-SVSKVHDAWFAD 117 (567)
Q Consensus 81 ~i~~v~~il~i~~~~a~~LL~~~~W-~~~~l~e~~~~~ 117 (567)
.|.++.+ ++.++..|...|+..+| |++.-++-.+.+
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~~ 58 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFSH 58 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 4666666 59999999999999999 998888766654
No 212
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.81 E-value=60 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=29.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 81 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.|.++.+ ++.+...|...|+..+||++.-++-.+.+
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 4556666 59999999999999999999888766544
No 213
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.34 E-value=17 Score=27.72 Aligned_cols=26 Identities=15% Similarity=0.520 Sum_probs=17.8
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFE 326 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~ 326 (567)
-.|+.|+..++...+ ..+.|. .||+.
T Consensus 29 Y~C~~CG~~~e~~~~-d~irCp-~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSRT-DAVRCK-DCGHR 54 (70)
T ss_dssp EECSSSCCEECCCTT-STTCCS-SSCCC
T ss_pred EECCCCCCcceeCCC-CCccCC-CCCce
Confidence 479999998775533 446776 67663
No 214
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=32.76 E-value=2.4e+02 Score=30.56 Aligned_cols=71 Identities=20% Similarity=0.328 Sum_probs=51.4
Q ss_pred hhhhHHHHhHHHHHHhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Q 008382 453 AKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSH 528 (567)
Q Consensus 453 ~~~~~fe~~Q~~le~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 528 (567)
.....++.+++..+..+..|.+.+|.+...++.... .-+..++.....+.+.-|++=.+.|.+.+.+|...
T Consensus 512 ~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQE-----RTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888899999988888877764221 12345566666666777888888888888888655
No 215
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.02 E-value=16 Score=27.63 Aligned_cols=30 Identities=30% Similarity=0.732 Sum_probs=19.3
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccchhhc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWL 330 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~ 330 (567)
..+|..|++.+...+ =.-+.|+ |+..||-.
T Consensus 15 ~~rC~~C~kk~gL~~-~egf~Cr--Cg~~FC~~ 44 (67)
T 1x4w_A 15 RRRCFQCQTKLELVQ-QELGSCR--CGYVFCML 44 (67)
T ss_dssp TTBCSSSCCBCCHHH-HHHHCCS--SSCCCCTT
T ss_pred CCcchhhCCeecccc-cCceEec--CCCEehhc
Confidence 368888888776211 0003587 99999964
No 216
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=31.56 E-value=27 Score=25.46 Aligned_cols=25 Identities=20% Similarity=0.507 Sum_probs=15.0
Q ss_pred cCCCCCCc-ceeecCCCCccccCCCCc
Q 008382 299 KPCPKCKR-PIEKNQGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~-~IEK~~GCnhm~C~~~C~ 324 (567)
..||.|+. .|.....=.-+.|. .||
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~-~CG 37 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICP-ECG 37 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECT-TTC
T ss_pred ccCcCCCCCceeEeCCCCeEEeC-CCC
Confidence 57999976 55544333446666 454
No 217
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=30.92 E-value=32 Score=31.30 Aligned_cols=30 Identities=0% Similarity=-0.250 Sum_probs=18.8
Q ss_pred CCcccCCCCCCCCceecccCCCCceeeecCCcccccccc
Q 008382 227 RKTKWCPAPGCEHAIDFAAGSGNFDVSCLCSYNFCWNCT 265 (567)
Q Consensus 227 ~~~~~CP~~~C~~~i~~~~~~~~~~v~C~C~~~fC~~C~ 265 (567)
+....||- |..++. ..|.-.||+.||..|-
T Consensus 104 p~~f~CPI--~~elm~-------DPV~~~~Ghtfer~~I 133 (179)
T 2f42_A 104 PDYLCGKI--SFELMR-------EPCITPSGITYDRKDI 133 (179)
T ss_dssp CGGGBCTT--TCSBCS-------SEEECTTSCEEEHHHH
T ss_pred cHhhcccC--ccccCC-------CCeECCCCCEECHHHH
Confidence 34567876 655432 1233389999998874
No 218
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=30.22 E-value=22 Score=24.74 Aligned_cols=37 Identities=5% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 80 DDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
+.|.++.+ ++.+...|...|...+||.+.-.+-.|++
T Consensus 6 eaI~rL~~-mGF~~~~a~~Al~a~~~n~e~A~~~Lf~~ 42 (47)
T 1dv0_A 6 EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLSQ 42 (47)
T ss_dssp HHHTTTTT-TTCCHHHHHHHHTTTTSCHHHHHHHTTSC
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34555544 48999999999999999999887766653
No 219
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=29.85 E-value=38 Score=32.15 Aligned_cols=59 Identities=24% Similarity=0.559 Sum_probs=31.0
Q ss_pred cchhHHHhhcChHHHHHHHHHHHHHHHhcCCCcccCCCCCCCCc-e-ecccCCCCceeee-cCCcccccc
Q 008382 197 VGQDMIDMLASDEDKKKYSRYLLRSYVEDNRKTKWCPAPGCEHA-I-DFAAGSGNFDVSC-LCSYNFCWN 263 (567)
Q Consensus 197 v~~~~i~~ll~~e~~~ky~~~~~~~~v~~~~~~~~CP~~~C~~~-i-~~~~~~~~~~v~C-~C~~~fC~~ 263 (567)
++..+...+-+.... .+.+.+.+|..+ .+||+ |+.. + .+..+....++.| .|+..|=.+
T Consensus 8 f~~~la~~YkS~SQ~---aRVLTE~Wv~~n---~yCPn--CG~~~l~~f~nN~PVaDF~C~~C~EeyELK 69 (257)
T 4esj_A 8 FNLELVETYKSNSQK---ARILTEDWVYRQ---SYCPN--CGNNPLNHFENNRPVADFYCNHCSEEFELK 69 (257)
T ss_dssp CCHHHHHHTTTCTTH---HHHHHHHHHHHH---CCCTT--TCCSSCEEC----CCCEEECTTTCCEEEEE
T ss_pred cCHHHHhhccChhhe---ehhhhHHHHHHC---CcCCC--CCChhhhhccCCCcccccccCCcchhheec
Confidence 334444444443322 244666677665 48998 8873 3 4444444566777 676665444
No 220
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=29.77 E-value=3.7e+02 Score=27.85 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHhcccceeecccCccchhhhhHHHHhHHHHHHhHH
Q 008382 391 RQKALADLHQMQTVHLEKLSDIQCTPESQLKFIIDAWLQIVECRRVLKWTYAYGYYLPEHEHAKRQFFEYLQGEAESGLE 470 (567)
Q Consensus 391 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~a~~~l~~~r~~L~~sy~~~yy~~~~~~~~~~~fe~~Q~~le~~~e 470 (567)
++.++.+-.+-...+|.+|.+ .+.-+......+..--+.+ .+++...|+++...-.
T Consensus 52 LqglL~kqerdv~~rI~kLkn-------~L~~~s~s~~~s~~y~~~~-----------------~~~lk~~~~q~~dndn 107 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQ-------QLADSQNKYKTSNRVIVET-----------------INILKPGLEGAQQLDE 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHTTTHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHH-------HHHHHHhhcchHHHHHHHH-----------------HHHHHHHHhhhccchh
Q ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Q 008382 471 RLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADVDSH 528 (567)
Q Consensus 471 ~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~ 528 (567)
.+.+..+ +++.+++.|..-+.+.+ ..++.|.+.|.++.+.
T Consensus 108 ~~~e~S~-----------------eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 108 NYGHVST-----------------ELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----------------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
No 221
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=29.65 E-value=19 Score=35.14 Aligned_cols=25 Identities=28% Similarity=0.675 Sum_probs=18.6
Q ss_pred cCCCCCCcceeec--CCCCccccCCCCc
Q 008382 299 KPCPKCKRPIEKN--QGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (567)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCP-VCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTS
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999975 555555665 565
No 222
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.38 E-value=16 Score=35.44 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=26.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|..++. ..|+.. .|||.||-.|...|-.
T Consensus 182 l~CPIcl~~f~-----DPVts~-~CGHsFcR~cI~~~~~ 214 (267)
T 3htk_C 182 LTCPITCKPYE-----APLISR-KCNHVFDRDGIQNYLQ 214 (267)
T ss_dssp SBCTTTSSBCS-----SEEEES-SSCCEEEHHHHHHHST
T ss_pred eECcCccCccc-----CCeeeC-CCCCcccHHHHHHHHH
Confidence 57999988876 567765 6999999999987643
No 223
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=29.11 E-value=18 Score=34.24 Aligned_cols=33 Identities=21% Similarity=0.580 Sum_probs=23.1
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
..|+.|+....-. --.-.|+ .||.-||..|...
T Consensus 165 ~~C~~C~~~F~~~--~RrhHCR-~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVM--TRKHHCR-ACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTT--BCCEECT-TTCCEECTTTCCE
T ss_pred CCCcCcCCCCCcc--ccccccC-CCcCEeChhhcCC
Confidence 5788888765411 1124588 8999999999764
No 224
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=29.06 E-value=22 Score=34.56 Aligned_cols=25 Identities=40% Similarity=1.045 Sum_probs=17.7
Q ss_pred cCCCCCCcceeec--CCCCccccCCCCc
Q 008382 299 KPCPKCKRPIEKN--QGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (567)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCP-TCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECT-TTT
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999975 444444554 554
No 225
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.02 E-value=31 Score=29.76 Aligned_cols=32 Identities=19% Similarity=0.497 Sum_probs=22.0
Q ss_pred CCcccCCCCCCCCceecccCC--CCceeee-cCCccc
Q 008382 227 RKTKWCPAPGCEHAIDFAAGS--GNFDVSC-LCSYNF 260 (567)
Q Consensus 227 ~~~~~CP~~~C~~~i~~~~~~--~~~~v~C-~C~~~f 260 (567)
..+++||. |++.+.+..+. +...+.| .|++..
T Consensus 22 ~~~~FCPe--CgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRD--CNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTT--TCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCC--CCCEeeECccCCCceeEEECCCCCCcE
Confidence 46789998 99988765332 3445678 777754
No 226
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=28.42 E-value=23 Score=30.09 Aligned_cols=31 Identities=19% Similarity=0.523 Sum_probs=22.2
Q ss_pred CcccCCCCCCCCceecccC--CCCceeee-cCCccc
Q 008382 228 KTKWCPAPGCEHAIDFAAG--SGNFDVSC-LCSYNF 260 (567)
Q Consensus 228 ~~~~CP~~~C~~~i~~~~~--~~~~~v~C-~C~~~f 260 (567)
.+.+||. |++.+....+ .....+.| .|++..
T Consensus 3 ~~~FCp~--CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 3 TFRFCRD--CNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCCBCSS--SCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCCcccc--cCccCcccccCcCCCCEEECCcCCCee
Confidence 3679998 9998876543 33456789 898765
No 227
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=28.28 E-value=12 Score=31.09 Aligned_cols=17 Identities=24% Similarity=0.866 Sum_probs=14.4
Q ss_pred CCccchhhccccccccC
Q 008382 322 PCKFEFCWLCLGAWSDH 338 (567)
Q Consensus 322 ~C~~~FCw~C~~~~~~H 338 (567)
.|+|.|+..|+..|-..
T Consensus 72 ~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp TTSCEEEHHHHHHHHTT
T ss_pred ccCcEECHHHHHHHHHc
Confidence 49999999999999654
No 228
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=28.20 E-value=3.6e+02 Score=27.23 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=44.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Q 008382 461 LQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLADV 525 (567)
Q Consensus 461 ~Q~~le~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~ 525 (567)
.+.+++...|.++..+..|+..|-. +...+|+..+......--.|.+++++.+|+=|+..
T Consensus 324 ~~~e~~~r~e~IS~~~~~El~rF~~-----~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f 383 (386)
T 4akv_A 324 EADGIRRRCRVVGFALQAEMNHFHQ-----RRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMY 383 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556788899999999888887643 44567777777777776777888888888766554
No 229
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=27.88 E-value=21 Score=34.72 Aligned_cols=25 Identities=28% Similarity=0.761 Sum_probs=18.1
Q ss_pred cCCCCCCcceeec--CCCCccccCCCCc
Q 008382 299 KPCPKCKRPIEKN--QGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (567)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCR-QCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeeEEEECCCceEECC-CCC
Confidence 7999999999975 554445565 564
No 230
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=27.72 E-value=21 Score=34.88 Aligned_cols=25 Identities=40% Similarity=0.963 Sum_probs=18.2
Q ss_pred cCCCCCCcceeec--CCCCccccCCCCc
Q 008382 299 KPCPKCKRPIEKN--QGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (567)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCP-RCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECC-CCC
Confidence 7999999999974 554555565 564
No 231
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=27.00 E-value=56 Score=25.51 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=26.1
Q ss_pred cCCCCcccccccccccccCC--eeecCCCCcccHhhHHHH
Q 008382 135 FSNARELTCGICFDTYSCDK--VVSAACGHPFCRACWRGY 172 (567)
Q Consensus 135 ~~~~~~~~C~IC~e~~~~~~--~~~l~CgH~fC~~Cl~~y 172 (567)
.+......|.+|...|.... -.--.||+.||..|....
T Consensus 16 ~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 16 QEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred ccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34556678999998874321 122369999999997653
No 232
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=26.96 E-value=22 Score=34.39 Aligned_cols=25 Identities=32% Similarity=0.759 Sum_probs=18.4
Q ss_pred cCCCCCCcceeec--CCCCccccCCCCc
Q 008382 299 KPCPKCKRPIEKN--QGCMHMTCSPPCK 324 (567)
Q Consensus 299 k~CPkC~~~IEK~--~GCnhm~C~~~C~ 324 (567)
++||.|+.+|++. +|=.-.+|. .|+
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP-~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCP-GCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECT-TTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECC-CCC
Confidence 7999999999974 555555665 564
No 233
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.82 E-value=34 Score=30.45 Aligned_cols=35 Identities=23% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCcccccccccccccCCeeec---CCCCcccHhhHHHHHHh
Q 008382 138 ARELTCGICFDTYSCDKVVSA---ACGHPFCRACWRGYISA 175 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~~l---~CgH~fC~~Cl~~y~~~ 175 (567)
..+..|.||.+. .+++.. .|...||..|+...+..
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 346778888764 344433 48888999999887643
No 234
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=26.46 E-value=27 Score=30.84 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=22.7
Q ss_pred CcccCCCCCCCCceecccCCCCceeee-cCCcccccc
Q 008382 228 KTKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWN 263 (567)
Q Consensus 228 ~~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~ 263 (567)
..+.||++.|+.-+..... .....| .|+..+++.
T Consensus 117 ~~~~c~~~~cg~g~fma~h--~~r~~cgkc~~t~~~~ 151 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANH--KDRLYCGKCHSVYKVN 151 (152)
T ss_dssp CSCBCCSTTSCSSSBEEEC--SSCEEESSSSSCCEEC
T ss_pred CcCcCCCccCCCceEeccc--CCCcccCCCceEEEec
Confidence 3578999999864332211 235689 999998864
No 235
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=26.18 E-value=81 Score=29.94 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=39.8
Q ss_pred cCccchhhhhHHHHhHHHHHHhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHcccccc
Q 008382 447 LPEHEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTK-NYFENLVRALENGLADV 525 (567)
Q Consensus 447 ~~~~~~~~~~~fe~~Q~~le~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~e~~l~~~ 525 (567)
++-....+..++|.. ++...++.|...|+++++.+--..... .+.+.++. .--+ -|++.-+++|+++|.+.
T Consensus 180 l~l~~~eKQ~LLe~~--d~~~Rl~~l~~lL~~e~e~~~l~~~I~---~~v~~~~~---k~Qrey~LrEQlk~IqkELGe~ 251 (252)
T 3ljc_A 180 MPLKLADKQSVLEMS--DVNERLEYLMAMMESEIDLLQVEKRIR---NRVKKQME---KSQREYYLNEQMKAIQKELGEM 251 (252)
T ss_dssp SCCCHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHhCCC
Confidence 333444566777654 777788888888888776431111000 12222222 2222 35577899999998753
No 236
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=26.02 E-value=1.1e+02 Score=24.29 Aligned_cols=50 Identities=28% Similarity=0.687 Sum_probs=33.1
Q ss_pred CCcccccccccccccC---Cee-ec-CCCCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCcc
Q 008382 138 ARELTCGICFDTYSCD---KVV-SA-ACGHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAV 197 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~---~~~-~l-~CgH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v 197 (567)
.....|.||-+....+ +++ .. .|+-..|+.|+.--. ++| .-.|| .|+...
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr----keG----~q~Cp--qCktrY 68 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER----REG----TQNCP--QCKTRY 68 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH----HTS----CSSCT--TTCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH----hcc----Ccccc--ccCCcc
Confidence 3457899999985332 233 22 488899999987543 345 46798 577654
No 237
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=25.19 E-value=29 Score=25.64 Aligned_cols=21 Identities=38% Similarity=0.920 Sum_probs=14.2
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCK 324 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~ 324 (567)
.-.||+|+.+.. .|..|. .||
T Consensus 30 l~~c~~cGe~~~-----~H~vc~-~CG 50 (60)
T 3v2d_5 30 LVPCPECKAMKP-----PHTVCP-ECG 50 (60)
T ss_dssp CEECTTTCCEEC-----TTSCCT-TTC
T ss_pred eeECCCCCCeec-----ceEEcC-CCC
Confidence 467898888766 555565 555
No 238
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=25.14 E-value=25 Score=32.15 Aligned_cols=73 Identities=14% Similarity=0.269 Sum_probs=40.4
Q ss_pred ccccccccccccCC----eeec-CCCCcccHhhHHHHHH--hhhcCCCCccccccCCCCCCCccchhHHHhhcChHHHHH
Q 008382 141 LTCGICFDTYSCDK----VVSA-ACGHPFCRACWRGYIS--ATVNDGPGCLMLRCPDPSCCAAVGQDMIDMLASDEDKKK 213 (567)
Q Consensus 141 ~~C~IC~e~~~~~~----~~~l-~CgH~fC~~Cl~~y~~--~~i~~g~~~~~i~CP~~~C~~~v~~~~i~~ll~~e~~~k 213 (567)
..|+||-..|...+ ++.. .|...|...|..---. ..+.+-+....+.|| .|...-+.. ++..+..++...
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~~el~~~ 79 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALEKELQIS 79 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHHHHHHHH
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHHHHHHHH
Confidence 46999998886654 4443 4888888888743111 111110001257899 587765543 444444454444
Q ss_pred HHH
Q 008382 214 YSR 216 (567)
Q Consensus 214 y~~ 216 (567)
+.+
T Consensus 80 l~~ 82 (183)
T 3lqh_A 80 LKQ 82 (183)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 239
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=25.08 E-value=83 Score=28.91 Aligned_cols=37 Identities=14% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
.+.|.++.++ |.+++.|...|...+|+.+..++..+.
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4555555443 899999999999999999998887654
No 240
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=25.06 E-value=35 Score=25.44 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=18.3
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~F 327 (567)
-.|..|+..++...+ ..+.|. .||+.+
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~-~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCR-ECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCS-SSCCCC
T ss_pred EECCCCCCeeecCCC-CceECC-CCCcEE
Confidence 468888887775544 447786 677654
No 241
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=25.01 E-value=23 Score=28.07 Aligned_cols=28 Identities=25% Similarity=0.669 Sum_probs=17.8
Q ss_pred cCCCCCCcc--e----eecCCCCccccCCCCccch
Q 008382 299 KPCPKCKRP--I----EKNQGCMHMTCSPPCKFEF 327 (567)
Q Consensus 299 k~CPkC~~~--I----EK~~GCnhm~C~~~C~~~F 327 (567)
-.||.|+.. | .|..|=-++.|+ .|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~-~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCT-VCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEES-SSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcc-cCCCeE
Confidence 578888754 2 244555667777 676655
No 242
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=24.85 E-value=47 Score=25.88 Aligned_cols=34 Identities=24% Similarity=0.679 Sum_probs=23.6
Q ss_pred CCcccCCCCCCCCceecccCCCCceeee-cCCccccccccc
Q 008382 227 RKTKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTE 266 (567)
Q Consensus 227 ~~~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 266 (567)
.....|+. |+..+.. ....-.| .||..||..|..
T Consensus 17 ~~~~~C~~--C~~~Fs~----~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCRQ--CEKEFSI----SRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCTT--TCCBCBT----TBCCEECTTTCCEECSGGGC
T ss_pred ccCCcccC--cCCcccC----ccccccCCCCCCEEChHHhC
Confidence 34557876 8765432 2234579 999999999974
No 243
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.07 E-value=38 Score=25.25 Aligned_cols=31 Identities=32% Similarity=0.789 Sum_probs=22.9
Q ss_pred cccCCCCCCCCceecccCCCCceeee-cCCccccccccc
Q 008382 229 TKWCPAPGCEHAIDFAAGSGNFDVSC-LCSYNFCWNCTE 266 (567)
Q Consensus 229 ~~~CP~~~C~~~i~~~~~~~~~~v~C-~C~~~fC~~C~~ 266 (567)
...|+.++|... +...+.| .|+..||...+.
T Consensus 12 ~~~Cs~~~Ck~~-------~ll~f~C~~C~~~FC~~HR~ 43 (63)
T 1x4v_A 12 TNKCERAGCRQR-------EMMKLTCERCSRNFCIKHRH 43 (63)
T ss_dssp CCCCCSTTCCCC-------CSSCCBCSSSCCBCCHHHHS
T ss_pred CCCCCccCCCCC-------CccceECCCCCcccCcccCC
Confidence 457888889854 2235789 699999988663
No 244
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=23.85 E-value=1.3e+02 Score=26.08 Aligned_cols=50 Identities=18% Similarity=0.549 Sum_probs=33.3
Q ss_pred CCcccccccccccccCCee-ecCCCCcccHhhHHHHHHh----hh--cCCCCccccccCCCCCCCc
Q 008382 138 ARELTCGICFDTYSCDKVV-SAACGHPFCRACWRGYISA----TV--NDGPGCLMLRCPDPSCCAA 196 (567)
Q Consensus 138 ~~~~~C~IC~e~~~~~~~~-~l~CgH~fC~~Cl~~y~~~----~i--~~g~~~~~i~CP~~~C~~~ 196 (567)
.....|.+|.+. .+.+ --.|...||..|+..-+.. .| ..+ .-.||. |...
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~----~W~C~~--C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENN----QWYCYI--CHPE 117 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTT----CCCCTT--TCCC
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCC----CCEeec--ccCc
Confidence 346789999985 3333 3469999999999977642 22 233 567984 6543
No 245
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=23.68 E-value=23 Score=23.01 Aligned_cols=14 Identities=14% Similarity=0.610 Sum_probs=10.8
Q ss_pred CCcccccccccccc
Q 008382 138 ARELTCGICFDTYS 151 (567)
Q Consensus 138 ~~~~~C~IC~e~~~ 151 (567)
.+.|.||+|+..+.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 34699999998764
No 246
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=23.18 E-value=60 Score=27.26 Aligned_cols=53 Identities=28% Similarity=0.627 Sum_probs=0.0
Q ss_pred cccccccccCCCCCCchhHHHHHHHhhhhHHHHHHHHhcCcCCCCCCcc-eeecCCCCc-cccCCCCcc-----------
Q 008382 259 NFCWNCTEEAHRPVDCGTVAKWILKNCAESENMNWILANSKPCPKCKRP-IEKNQGCMH-MTCSPPCKF----------- 325 (567)
Q Consensus 259 ~fC~~C~~~~H~p~~C~~~~~~~~~~~~~~~~~~wi~~ntk~CPkC~~~-IEK~~GCnh-m~C~~~C~~----------- 325 (567)
..|+.|...-|.-..|.. +.|.+|+.+ =-....|.. +.|. .|+.
T Consensus 5 ~~C~~C~~~GH~~~~Cp~----------------------~~C~~Cg~~~gH~~~~C~~~~~C~-~Cg~~GH~~~~C~~~ 61 (124)
T 2lli_A 5 PKCNNCSQRGHLKKDCPH----------------------IICSYCGATDDHYSRHCPKAIQCS-KCDEVGHYRSQCPHK 61 (124)
T ss_dssp SCCSSCSSSSCCTTTTTS----------------------CCCTTTCCTTTCCTTTGGGSSCSS-SSSCSSSSTTTSCCC
T ss_pred CcccCCCCCCcCcccCcC----------------------CcCcCCCCcCCccCcccCCccccc-ccCCCCCccccCcCc
Q ss_pred ---chhhccccc
Q 008382 326 ---EFCWLCLGA 334 (567)
Q Consensus 326 ---~FCw~C~~~ 334 (567)
..||.|+..
T Consensus 62 ~~~~~C~~Cg~~ 73 (124)
T 2lli_A 62 WKKVQCTLCKSK 73 (124)
T ss_dssp CCCCSSSSSCSS
T ss_pred ccCccCCCCCcC
No 247
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=23.00 E-value=41 Score=28.59 Aligned_cols=36 Identities=22% Similarity=0.530 Sum_probs=24.4
Q ss_pred CCCcccccccccccccC--CeeecCCCCcccHhhHHHH
Q 008382 137 NARELTCGICFDTYSCD--KVVSAACGHPFCRACWRGY 172 (567)
Q Consensus 137 ~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y 172 (567)
......|.+|...|... .-.--.||+.||..|....
T Consensus 66 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34456799999887432 1122369999999997654
No 248
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=22.98 E-value=34 Score=25.20 Aligned_cols=22 Identities=27% Similarity=0.801 Sum_probs=14.4
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCcc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKF 325 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~ 325 (567)
.-.||.|+.+.. .|..|. .||+
T Consensus 30 l~~c~~cG~~~~-----pH~vc~-~CG~ 51 (60)
T 2zjr_Z 30 LTECPQCHGKKL-----SHHICP-NCGY 51 (60)
T ss_dssp CEECTTTCCEEC-----TTBCCT-TTCB
T ss_pred ceECCCCCCEeC-----CceEcC-CCCc
Confidence 457898888765 555565 5653
No 249
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=22.94 E-value=18 Score=37.51 Aligned_cols=40 Identities=15% Similarity=0.348 Sum_probs=0.0
Q ss_pred HHHHh-cCcCCCCCCcceeecCCCCccccCCCCccchhhccccc
Q 008382 292 NWILA-NSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGA 334 (567)
Q Consensus 292 ~wi~~-ntk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~ 334 (567)
.|+.. ....|+.|+.+..-... .-.|+ .||.-||..|...
T Consensus 368 ~w~~~~~~~~c~~c~~~f~~~~r--~h~Cr-~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 368 TLVPVTHVMMCMNCGCDFSLTLR--RHHCH-ACGKIVCRNCSRN 408 (434)
T ss_dssp --------------------------------------------
T ss_pred cCCCcccCCcCCCcCCCCCCcch--hhhcc-cCcCEeehhhCCC
Confidence 46543 25679999886642211 23588 8999999999753
No 250
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=22.87 E-value=32 Score=30.38 Aligned_cols=30 Identities=13% Similarity=0.371 Sum_probs=21.3
Q ss_pred cCCCC--CCcceeecCCCCccccCCCCccchhh
Q 008382 299 KPCPK--CKRPIEKNQGCMHMTCSPPCKFEFCW 329 (567)
Q Consensus 299 k~CPk--C~~~IEK~~GCnhm~C~~~C~~~FCw 329 (567)
+.||+ |+.-+.-..-=+..+|. +|++-+++
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cg-kc~~t~~~ 150 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCG-KCHSVYKV 150 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEES-SSSSCCEE
T ss_pred CcCCCccCCCceEecccCCCcccC-CCceEEEe
Confidence 78999 98865533333567898 89887765
No 251
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.84 E-value=1.2e+02 Score=20.59 Aligned_cols=35 Identities=9% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcC
Q 008382 81 DITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFAD 117 (567)
Q Consensus 81 ~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~ 117 (567)
.|.++.+ .+.+...|...|+..+ |++.-++-.+.+
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~h 46 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHTC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHcC
Confidence 4666666 5899999999999887 887777655543
No 252
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=22.80 E-value=77 Score=27.97 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=29.8
Q ss_pred cCcCCCCCCcceeecCCCCccccCCCCccchhhcccc
Q 008382 297 NSKPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLG 333 (567)
Q Consensus 297 ntk~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~ 333 (567)
+...|..|..+.---.+.. ..|. .|++.+|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~g-~~C~-~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSR-RQCL-ECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCC-EECT-TTCCEECGGGEE
T ss_pred CCccchhhcCccccccCCC-CcCC-CCCchhhccccc
Confidence 3578999999988778886 5688 899999999984
No 253
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.56 E-value=14 Score=30.25 Aligned_cols=40 Identities=23% Similarity=0.448 Sum_probs=28.0
Q ss_pred CCcccHhhHHHHHHhhhcCCCCccccccCCCCCCCccchhH
Q 008382 161 GHPFCRACWRGYISATVNDGPGCLMLRCPDPSCCAAVGQDM 201 (567)
Q Consensus 161 gH~fC~~Cl~~y~~~~i~~g~~~~~i~CP~~~C~~~v~~~~ 201 (567)
.|.-|..|+.......+..+..+.++.||. .|...+..-.
T Consensus 13 ~h~HC~~C~~~~C~~~~~~~~~C~~i~CP~-~Cga~i~rck 52 (100)
T 2yre_A 13 QHSHCVNCVSRRCMTRPEPGISCDLIGCPL-VCGAVFHSCK 52 (100)
T ss_dssp CCTTGGGCCCTTCCCCCCTTTCCCEEECTT-CCSCEEEHHH
T ss_pred cchhHhhhcccccCCCCCCCCeeeeeeCCc-ccCCeeehhh
Confidence 477788887776666665666678999994 6877665443
No 254
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.47 E-value=92 Score=23.79 Aligned_cols=37 Identities=3% Similarity=-0.077 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-CChhhhHHhhhcC
Q 008382 80 DDITKVSTVLSISRVDASILLRHYN-WSVSKVHDAWFAD 117 (567)
Q Consensus 80 ~~i~~v~~il~i~~~~a~~LL~~~~-W~~~~l~e~~~~~ 117 (567)
+.|.++.+ ++.+...|+..|+..+ |+++.-++-.+.+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 34666666 5999999999998887 6899888766543
No 255
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=22.47 E-value=1e+02 Score=29.53 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhc
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFA 116 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~ 116 (567)
.+.|.++.++ +.+...|...|..++|+.+..++..+.
T Consensus 216 ~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 3445555443 899999999999999999999887654
No 256
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=22.36 E-value=4e+02 Score=23.47 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=27.6
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 008382 461 LQGEAESGLERLHQCAEKELLQFLNDESQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGL 522 (567)
Q Consensus 461 ~Q~~le~~~e~L~~~le~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l 522 (567)
++..|...+|.|...|+.-+.++-..-. ..+.++|.+|.-++.-.+.....-+++|..=|
T Consensus 100 Lr~~L~~d~EelR~~l~p~~~el~~~l~--~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL 159 (165)
T 1gs9_A 100 AQARLGADMEDVRGRLVQYRGEVQAMLG--QSTEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 3444444444444444433333322211 22446777776555444555555555554433
No 257
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.35 E-value=32 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.478 Sum_probs=14.8
Q ss_pred CcCCCCCCcceeecCCCCccccCCCCccc
Q 008382 298 SKPCPKCKRPIEKNQGCMHMTCSPPCKFE 326 (567)
Q Consensus 298 tk~CPkC~~~IEK~~GCnhm~C~~~C~~~ 326 (567)
.+.||+|+..+ +=.--.|+ .||+.
T Consensus 14 k~iCpkC~a~~----~~gaw~Cr-KCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGATN----PWGAKKCR-KCGYK 37 (51)
T ss_dssp EEECTTTCCEE----CTTCSSCS-SSSSC
T ss_pred CccCCCCCCcC----CCCceecC-CCCCc
Confidence 36899998872 12224566 67664
No 258
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=22.27 E-value=32 Score=31.57 Aligned_cols=28 Identities=32% Similarity=0.656 Sum_probs=17.7
Q ss_pred cCCCCCCcce-eecCCCCccccCCCCccchh
Q 008382 299 KPCPKCKRPI-EKNQGCMHMTCSPPCKFEFC 328 (567)
Q Consensus 299 k~CPkC~~~I-EK~~GCnhm~C~~~C~~~FC 328 (567)
+.||+|+..+ -....+.| +|. .|++-|+
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~-~CG-kC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRH-YCG-KCHLTLK 142 (189)
T ss_dssp EECSTTCSSCEEEECSSCE-EET-TTCCCBC
T ss_pred ccCCccCCCccccCccCCC-ccC-CceeEEE
Confidence 7899999653 33445544 676 6666554
No 259
>3rpj_A Curlin genes transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.90A {Proteus mirabilis}
Probab=22.26 E-value=42 Score=28.73 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=33.7
Q ss_pred HhcccceeecccCccchhhhhHHHH-hHHHHHHhHHHHHHHHHHHHHHhhccccchhhHH
Q 008382 436 VLKWTYAYGYYLPEHEHAKRQFFEY-LQGEAESGLERLHQCAEKELLQFLNDESQSKEFN 494 (567)
Q Consensus 436 ~L~~sy~~~yy~~~~~~~~~~~fe~-~Q~~le~~~e~L~~~le~~~~~~~~~~~~~~~~~ 494 (567)
...|+|-+|.|-...+=....|=.. .+..+++.++..|+.|..-|.++--...|.++|.
T Consensus 69 ~F~y~Y~~Glydk~G~W~~~~i~~~~~~e~v~~Tl~~FH~kL~~~L~~lel~L~Pa~~~~ 128 (134)
T 3rpj_A 69 QLIYYYQVGLFDKNGDWVNQVISKKDVIESIHETLIRFHDFLQAAVSELEMTLVPDEKMS 128 (134)
T ss_dssp EEEEEEEEEEECTTSCEESCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECGGGG
T ss_pred cEEEEEecccccCCCCeeeccCCcHHHHHHHHHHHHHHHHHHHHHHHhcceeeeeCcccc
Confidence 4567888898874433111222222 2444777777777777776666644445555443
No 260
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=21.79 E-value=58 Score=30.90 Aligned_cols=21 Identities=24% Similarity=0.869 Sum_probs=15.4
Q ss_pred HHHHHHHhcCcCCCCCCc-ceee
Q 008382 289 ENMNWILANSKPCPKCKR-PIEK 310 (567)
Q Consensus 289 ~~~~wi~~ntk~CPkC~~-~IEK 310 (567)
-+..|+..| --||+|+. +|.+
T Consensus 26 LTE~Wv~~n-~yCPnCG~~~l~~ 47 (257)
T 4esj_A 26 LTEDWVYRQ-SYCPNCGNNPLNH 47 (257)
T ss_dssp HHHHHHHHH-CCCTTTCCSSCEE
T ss_pred hhHHHHHHC-CcCCCCCChhhhh
Confidence 356788777 48999998 5654
No 261
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=21.55 E-value=1.1e+02 Score=25.31 Aligned_cols=40 Identities=8% Similarity=0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCChhhhHHhhhcCh
Q 008382 79 EDDITKVSTVLSISRVDASILLRHYNWSVSKVHDAWFADE 118 (567)
Q Consensus 79 ~~~i~~v~~il~i~~~~a~~LL~~~~W~~~~l~e~~~~~~ 118 (567)
.+.|.++.++=..+...+...|+..+||+++.++..+.++
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~~ 106 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAGG 106 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 4566777665444678889999999999999999877654
No 262
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.53 E-value=44 Score=28.28 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=22.3
Q ss_pred CCCCcccccccccccccC--CeeecCCCCcccHhhHHHHH
Q 008382 136 SNARELTCGICFDTYSCD--KVVSAACGHPFCRACWRGYI 173 (567)
Q Consensus 136 ~~~~~~~C~IC~e~~~~~--~~~~l~CgH~fC~~Cl~~y~ 173 (567)
|......|..|-..|... .-.--.||..||..|....+
T Consensus 15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 344456899998877431 12234699999999976553
No 263
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.48 E-value=2.5e+02 Score=25.40 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 008382 493 FNDFRTKLAGLTSVTKNYFENLVRALENGL 522 (567)
Q Consensus 493 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l 522 (567)
+.++|.+|.-.+.-.+..+..-++.|..-|
T Consensus 130 ~Eelr~~L~Py~eelr~kl~~~~eeLr~~l 159 (191)
T 1nfn_A 130 TEELRVRLASHLRKLRKRLLRDADDLQKRL 159 (191)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 345555554444444444444444444433
No 264
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.32 E-value=20 Score=29.12 Aligned_cols=32 Identities=6% Similarity=-0.209 Sum_probs=24.0
Q ss_pred cCCCCCCcceeecCCCCccccCCCCccchhhcccccccc
Q 008382 299 KPCPKCKRPIEKNQGCMHMTCSPPCKFEFCWLCLGAWSD 337 (567)
Q Consensus 299 k~CPkC~~~IEK~~GCnhm~C~~~C~~~FCw~C~~~~~~ 337 (567)
-.||-|..++. +.++- .|||.||..|...|-.
T Consensus 30 ~~CpI~~~~m~-----dPV~~--~cGhtf~r~~I~~~l~ 61 (100)
T 2kre_A 30 FRDPLMDTLMT-----DPVRL--PSGTIMDRSIILRHLL 61 (100)
T ss_dssp TBCTTTCSBCS-----SEEEE--TTTEEEEHHHHHHHTT
T ss_pred hCCcCccCccc-----CCeEC--CCCCEEchHHHHHHHH
Confidence 57999987665 33443 4999999999988764
Done!