Query 008383
Match_columns 567
No_of_seqs 276 out of 1476
Neff 7.1
Searched_HMMs 46136
Date Thu Mar 28 23:08:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2476 Uncharacterized conser 100.0 8E-113 2E-117 875.6 40.5 479 1-566 1-490 (528)
2 cd00844 MPP_Dbr1_N Dbr1 RNA la 100.0 7.6E-45 1.6E-49 366.6 24.0 223 6-241 1-261 (262)
3 cd07380 MPP_CWF19_N Schizosacc 100.0 3.5E-41 7.7E-46 312.3 14.5 145 7-233 1-150 (150)
4 KOG2863 RNA lariat debranching 100.0 3.8E-41 8.3E-46 337.4 12.7 227 4-247 1-264 (456)
5 KOG2477 Uncharacterized conser 100.0 7.3E-40 1.6E-44 339.1 12.7 180 387-566 405-588 (628)
6 PF04677 CwfJ_C_1: Protein sim 100.0 3.9E-37 8.5E-42 274.8 14.1 116 384-499 6-121 (121)
7 cd07388 MPP_Tt1561 Thermus the 99.9 8E-21 1.7E-25 187.7 21.1 195 3-235 4-208 (224)
8 COG2129 Predicted phosphoester 99.9 2.1E-20 4.6E-25 180.4 21.7 199 1-234 1-205 (226)
9 cd07392 MPP_PAE1087 Pyrobaculu 99.8 3.1E-19 6.7E-24 170.7 20.7 187 6-231 1-188 (188)
10 PRK10687 purine nucleoside pho 99.6 7.1E-16 1.5E-20 138.0 10.2 101 388-488 2-109 (119)
11 PF14582 Metallophos_3: Metall 99.6 7.9E-14 1.7E-18 134.6 19.6 199 4-235 6-237 (255)
12 COG0537 Hit Diadenosine tetrap 99.6 8.2E-15 1.8E-19 134.5 10.5 99 390-488 2-106 (138)
13 cd01275 FHIT FHIT (fragile his 99.5 3.8E-14 8.3E-19 128.2 11.0 99 391-489 1-106 (126)
14 cd01277 HINT_subgroup HINT (hi 99.5 6.3E-14 1.4E-18 121.8 11.0 97 390-486 1-103 (103)
15 cd01276 PKCI_related Protein K 99.5 1.7E-13 3.6E-18 119.5 9.3 97 390-486 1-104 (104)
16 cd07397 MPP_DevT Myxococcus xa 99.4 7.4E-12 1.6E-16 124.5 18.4 203 4-234 1-235 (238)
17 PF01230 HIT: HIT domain; Int 99.4 1.7E-12 3.7E-17 112.1 9.3 86 402-487 5-96 (98)
18 cd07379 MPP_239FB Homo sapiens 99.4 6.8E-12 1.5E-16 114.5 12.8 133 5-231 1-135 (135)
19 PF04676 CwfJ_C_2: Protein sim 99.3 1.4E-12 2.9E-17 112.8 4.1 59 508-566 1-61 (98)
20 cd01278 aprataxin_related apra 99.3 2.6E-11 5.7E-16 105.8 11.4 95 390-484 1-103 (104)
21 TIGR03729 acc_ester putative p 99.3 8.9E-11 1.9E-15 117.7 14.6 200 5-231 1-236 (239)
22 cd07402 MPP_GpdQ Enterobacter 99.3 3.1E-10 6.7E-15 113.2 18.4 197 5-235 1-212 (240)
23 cd00468 HIT_like HIT family: H 99.2 2.8E-11 6E-16 101.4 8.7 80 406-485 1-86 (86)
24 KOG3275 Zinc-binding protein o 99.2 3.3E-11 7.1E-16 103.9 9.0 97 388-485 15-118 (127)
25 PF00149 Metallophos: Calcineu 99.1 1.9E-10 4.1E-15 104.9 9.7 192 4-210 1-200 (200)
26 cd07393 MPP_DR1119 Deinococcus 99.0 7.5E-09 1.6E-13 103.4 17.1 179 6-218 1-213 (232)
27 PF12850 Metallophos_2: Calcin 99.0 3E-09 6.5E-14 98.4 11.8 141 4-237 1-141 (156)
28 KOG3947 Phosphoesterases [Gene 99.0 3.7E-09 8.1E-14 104.7 12.5 204 4-233 62-281 (305)
29 cd07403 MPP_TTHA0053 Thermus t 99.0 7.1E-09 1.5E-13 94.2 12.4 68 155-233 57-124 (129)
30 TIGR00040 yfcE phosphoesterase 99.0 1.2E-08 2.7E-13 95.6 14.3 63 4-76 1-63 (158)
31 cd07404 MPP_MS158 Microscilla 99.0 4.2E-09 9E-14 99.4 11.0 150 6-211 1-150 (166)
32 TIGR00209 galT_1 galactose-1-p 99.0 1.6E-09 3.4E-14 114.2 9.0 99 389-487 194-303 (347)
33 PRK11148 cyclic 3',5'-adenosin 99.0 5.2E-08 1.1E-12 99.8 19.6 195 3-234 14-224 (275)
34 PRK11720 galactose-1-phosphate 98.9 2.3E-09 5E-14 112.9 9.3 99 389-487 194-303 (346)
35 cd00841 MPP_YfcE Escherichia c 98.8 7.5E-08 1.6E-12 89.6 13.7 133 5-236 1-133 (155)
36 cd00838 MPP_superfamily metall 98.8 5.1E-08 1.1E-12 85.9 11.6 131 7-231 1-131 (131)
37 PLN02643 ADP-glucose phosphory 98.8 2.2E-08 4.8E-13 105.2 9.9 96 389-487 198-303 (336)
38 cd07385 MPP_YkuE_C Bacillus su 98.8 2.2E-07 4.7E-12 91.6 15.6 162 3-216 1-172 (223)
39 cd07396 MPP_Nbla03831 Homo sap 98.7 4.9E-07 1.1E-11 92.2 18.3 198 5-235 2-246 (267)
40 PRK09453 phosphodiesterase; Pr 98.7 1.7E-07 3.7E-12 90.0 14.0 68 4-76 1-75 (182)
41 PHA03008 hypothetical protein; 98.7 2.7E-08 5.8E-13 93.7 8.0 93 101-210 98-204 (234)
42 cd00608 GalT Galactose-1-phosp 98.7 2.4E-08 5.2E-13 104.9 8.6 100 389-488 184-296 (329)
43 PF11969 DcpS_C: Scavenger mRN 98.7 1.4E-08 3.1E-13 90.5 5.7 99 390-489 1-107 (116)
44 KOG3379 Diadenosine polyphosph 98.7 8.9E-08 1.9E-12 85.2 10.4 89 400-488 14-108 (150)
45 cd07400 MPP_YydB Bacillus subt 98.6 1.3E-06 2.9E-11 80.0 13.7 63 157-231 81-143 (144)
46 COG0622 Predicted phosphoester 98.5 2.5E-06 5.5E-11 81.2 15.0 140 3-237 1-141 (172)
47 cd07394 MPP_Vps29 Homo sapiens 98.5 1.7E-06 3.7E-11 83.0 14.0 134 5-235 1-136 (178)
48 cd00839 MPP_PAPs purple acid p 98.5 1.2E-06 2.7E-11 90.1 13.0 215 3-235 4-239 (294)
49 PRK05340 UDP-2,3-diacylglucosa 98.5 3.6E-06 7.8E-11 84.6 15.5 201 4-235 1-221 (241)
50 cd07395 MPP_CSTP1 Homo sapiens 98.5 7.9E-06 1.7E-10 82.9 18.1 185 3-210 4-218 (262)
51 cd00840 MPP_Mre11_N Mre11 nucl 98.5 6.3E-07 1.4E-11 87.9 9.8 175 5-211 1-202 (223)
52 cd07378 MPP_ACP5 Homo sapiens 98.4 8.5E-06 1.8E-10 83.2 15.4 206 4-235 1-233 (277)
53 TIGR01854 lipid_A_lpxH UDP-2,3 98.4 1E-05 2.2E-10 80.8 15.0 103 6-127 1-115 (231)
54 PRK11340 phosphodiesterase Yae 98.3 1.4E-05 3.1E-10 81.8 16.1 71 3-76 49-124 (271)
55 cd08163 MPP_Cdc1 Saccharomyces 98.3 5.7E-05 1.2E-09 76.7 18.0 162 32-213 45-231 (257)
56 PHA02239 putative protein phos 98.2 4E-06 8.6E-11 84.0 8.0 78 4-84 1-78 (235)
57 TIGR00583 mre11 DNA repair pro 98.2 1E-05 2.3E-10 87.0 11.0 75 3-78 3-124 (405)
58 PHA02546 47 endonuclease subun 98.2 3.6E-05 7.8E-10 81.4 14.7 139 4-162 1-155 (340)
59 cd07383 MPP_Dcr2 Saccharomyces 98.1 3.3E-05 7.2E-10 75.1 12.3 72 3-75 2-87 (199)
60 PLN02533 probable purple acid 98.1 9.9E-05 2.1E-09 80.4 17.2 208 3-236 139-361 (427)
61 cd07399 MPP_YvnB Bacillus subt 98.1 3.6E-05 7.7E-10 76.0 12.4 150 5-211 2-162 (214)
62 PRK00166 apaH diadenosine tetr 98.1 6.6E-06 1.4E-10 84.3 7.2 68 4-76 1-68 (275)
63 cd07401 MPP_TMEM62_N Homo sapi 98.1 0.00017 3.7E-09 73.2 17.4 186 6-219 2-219 (256)
64 PRK04036 DNA polymerase II sma 98.1 5.5E-05 1.2E-09 84.0 14.5 117 3-127 243-388 (504)
65 cd07386 MPP_DNA_pol_II_small_a 98.0 1.9E-05 4.1E-10 79.4 8.4 108 7-127 2-139 (243)
66 cd07410 MPP_CpdB_N Escherichia 98.0 0.00057 1.2E-08 70.1 19.2 209 4-248 1-257 (277)
67 KOG4359 Protein kinase C inhib 97.9 2.2E-05 4.8E-10 70.2 6.4 103 388-491 30-141 (166)
68 cd07424 MPP_PrpA_PrpB PrpA and 97.8 3.5E-05 7.7E-10 75.5 7.2 66 4-76 1-66 (207)
69 TIGR00619 sbcd exonuclease Sbc 97.8 4.8E-05 1E-09 77.1 8.0 74 4-78 1-89 (253)
70 cd07423 MPP_PrpE Bacillus subt 97.8 3.2E-05 6.9E-10 77.4 6.5 76 4-83 1-84 (234)
71 cd00845 MPP_UshA_N_like Escher 97.7 0.0039 8.5E-08 62.7 19.2 201 4-250 1-236 (252)
72 PRK10966 exonuclease subunit S 97.6 0.00013 2.9E-09 78.8 8.5 75 4-79 1-89 (407)
73 PRK11439 pphA serine/threonine 97.6 8.7E-05 1.9E-09 73.5 6.3 72 4-84 17-88 (218)
74 COG0420 SbcD DNA repair exonuc 97.6 0.00016 3.6E-09 77.7 8.2 73 4-78 1-89 (390)
75 TIGR00668 apaH bis(5'-nucleosy 97.6 0.00012 2.6E-09 74.7 6.6 68 4-76 1-68 (279)
76 cd07421 MPP_Rhilphs Rhilph pho 97.6 0.00021 4.5E-09 73.3 8.0 72 5-77 3-80 (304)
77 cd07422 MPP_ApaH Escherichia c 97.6 0.00014 3E-09 73.8 6.6 67 6-77 1-67 (257)
78 PRK13625 bis(5'-nucleosyl)-tet 97.5 0.00015 3.2E-09 73.2 6.3 77 4-84 1-84 (245)
79 PRK09968 serine/threonine-spec 97.5 0.00017 3.8E-09 71.4 6.5 71 5-84 16-86 (218)
80 cd07412 MPP_YhcR_N Bacillus su 97.5 0.016 3.5E-07 59.9 21.3 220 4-250 1-272 (288)
81 cd07413 MPP_PA3087 Pseudomonas 97.4 0.0003 6.6E-09 69.9 6.8 68 7-76 2-75 (222)
82 cd07425 MPP_Shelphs Shewanella 97.4 0.00032 6.9E-09 69.0 6.7 69 7-76 1-79 (208)
83 cd00144 MPP_PPP_family phospho 97.4 0.00032 6.8E-09 69.2 6.4 67 7-76 1-67 (225)
84 cd08166 MPP_Cdc1_like_1 unchar 97.3 0.002 4.3E-08 62.6 11.1 99 32-209 42-146 (195)
85 COG1409 Icc Predicted phosphoh 97.3 0.0064 1.4E-07 61.7 15.4 179 4-210 1-193 (301)
86 cd07411 MPP_SoxB_N Thermus the 97.3 0.023 5E-07 57.8 19.4 200 4-250 1-250 (264)
87 COG1768 Predicted phosphohydro 97.3 0.0059 1.3E-07 57.8 13.3 149 26-209 37-198 (230)
88 cd07406 MPP_CG11883_N Drosophi 97.2 0.036 7.8E-07 56.3 19.7 112 4-128 1-138 (257)
89 cd07408 MPP_SA0022_N Staphyloc 97.2 0.0056 1.2E-07 62.1 12.9 110 4-127 1-135 (257)
90 PRK09419 bifunctional 2',3'-cy 97.0 0.038 8.3E-07 67.7 20.8 204 3-235 660-900 (1163)
91 cd07405 MPP_UshA_N Escherichia 97.0 0.084 1.8E-06 54.5 20.0 112 4-127 1-138 (285)
92 cd07398 MPP_YbbF-LpxH Escheric 97.0 0.0036 7.8E-08 61.2 9.0 42 185-233 176-217 (217)
93 TIGR01530 nadN NAD pyrophospha 96.9 0.013 2.8E-07 66.1 14.3 36 416-451 409-445 (550)
94 cd07420 MPP_RdgC Drosophila me 96.8 0.0025 5.5E-08 66.7 6.6 73 4-77 51-123 (321)
95 PTZ00422 glideosome-associated 96.8 0.07 1.5E-06 57.3 17.5 214 3-234 26-277 (394)
96 smart00156 PP2Ac Protein phosp 96.7 0.0034 7.4E-08 64.3 7.1 73 3-77 27-99 (271)
97 TIGR00024 SbcD_rel_arch putati 96.6 0.0035 7.5E-08 62.5 6.1 68 5-76 16-101 (225)
98 cd07416 MPP_PP2B PP2B, metallo 96.6 0.0053 1.1E-07 64.0 7.2 72 4-77 43-114 (305)
99 cd00842 MPP_ASMase acid sphing 96.4 0.079 1.7E-06 54.6 14.6 173 20-213 56-264 (296)
100 COG0737 UshA 5'-nucleotidase/2 96.4 0.13 2.7E-06 57.7 17.1 214 3-250 26-280 (517)
101 cd07414 MPP_PP1_PPKL PP1, PPKL 96.4 0.0067 1.5E-07 62.9 6.4 72 4-77 50-121 (293)
102 PRK09558 ushA bifunctional UDP 96.3 0.1 2.2E-06 58.9 16.2 113 3-126 34-172 (551)
103 cd07415 MPP_PP2A_PP4_PP6 PP2A, 96.3 0.0076 1.6E-07 62.2 6.3 206 4-234 42-259 (285)
104 cd07409 MPP_CD73_N CD73 ecto-5 96.3 0.093 2E-06 54.0 14.2 111 4-127 1-149 (281)
105 PTZ00239 serine/threonine prot 96.2 0.0087 1.9E-07 62.3 6.5 207 4-234 43-261 (303)
106 PTZ00244 serine/threonine-prot 96.2 0.0074 1.6E-07 62.6 5.8 206 5-234 53-269 (294)
107 PTZ00480 serine/threonine-prot 96.2 0.01 2.2E-07 62.1 6.7 211 4-235 59-277 (320)
108 cd07407 MPP_YHR202W_N Saccharo 96.2 0.074 1.6E-06 54.9 12.8 117 3-127 5-156 (282)
109 cd07417 MPP_PP5_C PP5, C-termi 96.1 0.01 2.2E-07 62.1 6.5 211 4-234 60-278 (316)
110 cd07390 MPP_AQ1575 Aquifex aeo 96.1 0.014 3E-07 55.3 6.9 66 7-77 2-82 (168)
111 cd07418 MPP_PP7 PP7, metalloph 96.0 0.013 2.9E-07 62.4 6.8 73 4-77 66-138 (377)
112 COG1085 GalT Galactose-1-phosp 95.8 0.024 5.2E-07 59.2 7.3 98 388-485 184-291 (338)
113 cd07382 MPP_DR1281 Deinococcus 95.8 0.2 4.3E-06 51.0 13.6 109 5-126 1-115 (255)
114 TIGR00282 metallophosphoestera 95.8 0.061 1.3E-06 54.9 10.0 70 4-78 1-72 (266)
115 KOG3325 Membrane coat complex 95.7 0.085 1.8E-06 48.5 9.7 111 4-160 1-113 (183)
116 cd07419 MPP_Bsu1_C Arabidopsis 95.7 0.027 5.8E-07 58.9 7.2 74 4-77 48-127 (311)
117 TIGR03767 P_acnes_RR metalloph 95.6 0.37 7.9E-06 53.0 15.4 90 116-209 300-391 (496)
118 cd07391 MPP_PF1019 Pyrococcus 95.5 0.031 6.7E-07 53.1 6.3 58 18-76 28-87 (172)
119 cd08162 MPP_PhoA_N Synechococc 95.3 0.35 7.6E-06 50.7 14.0 119 4-127 1-165 (313)
120 KOG2679 Purple (tartrate-resis 95.2 0.084 1.8E-06 53.3 8.2 208 3-232 43-272 (336)
121 cd07384 MPP_Cdc1_like Saccharo 95.0 0.03 6.6E-07 53.3 4.7 56 19-75 33-98 (171)
122 KOG2310 DNA repair exonuclease 95.0 0.057 1.2E-06 59.0 7.0 75 3-79 13-135 (646)
123 PF02744 GalP_UDP_tr_C: Galact 94.6 0.05 1.1E-06 51.6 5.0 72 389-460 13-86 (166)
124 KOG0371 Serine/threonine prote 94.6 0.064 1.4E-06 53.6 5.8 69 6-76 62-130 (319)
125 cd08165 MPP_MPPE1 human MPPE1 94.6 0.056 1.2E-06 50.6 5.2 44 32-75 38-87 (156)
126 PRK09418 bifunctional 2',3'-cy 93.8 3.4 7.5E-05 48.5 18.8 42 3-45 39-96 (780)
127 PRK09419 bifunctional 2',3'-cy 93.4 4.6 0.0001 49.9 19.8 206 4-235 42-312 (1163)
128 COG2908 Uncharacterized protei 93.2 0.38 8.2E-06 48.0 8.2 79 32-126 29-114 (237)
129 COG1408 Predicted phosphohydro 92.8 0.25 5.5E-06 51.0 6.7 72 3-77 44-118 (284)
130 cd07387 MPP_PolD2_C PolD2 (DNA 92.2 2.1 4.5E-05 43.6 12.2 185 33-248 43-248 (257)
131 KOG1378 Purple acid phosphatas 92.1 2.7 5.8E-05 45.9 13.5 189 3-214 147-347 (452)
132 KOG2958 Galactose-1-phosphate 91.5 0.33 7.1E-06 49.3 5.5 61 400-460 212-272 (354)
133 KOG0373 Serine/threonine speci 91.3 0.46 1E-05 46.6 6.1 68 5-76 47-116 (306)
134 KOG0372 Serine/threonine speci 91.2 0.37 8E-06 48.0 5.4 68 6-77 45-114 (303)
135 cd08164 MPP_Ted1 Saccharomyces 90.5 0.36 7.9E-06 46.9 4.6 44 32-75 44-109 (193)
136 KOG1595 CCCH-type Zn-finger pr 89.9 0.55 1.2E-05 51.5 5.9 102 231-370 187-292 (528)
137 cd00608 GalT Galactose-1-phosp 89.8 4.2 9E-05 42.9 12.3 61 425-485 95-161 (329)
138 COG1407 Predicted ICC-like pho 89.4 0.99 2.2E-05 45.1 6.8 67 4-76 20-109 (235)
139 TIGR01390 CycNucDiestase 2',3' 89.3 4.4 9.6E-05 46.6 12.9 113 3-127 2-160 (626)
140 COG4186 Predicted phosphoester 88.9 0.8 1.7E-05 42.7 5.3 69 1-75 1-84 (186)
141 COG4360 APA2 ATP adenylyltrans 88.4 0.71 1.5E-05 45.7 4.8 72 409-488 90-165 (298)
142 TIGR03768 RPA4764 metallophosp 88.4 0.9 2E-05 49.6 6.1 60 16-76 84-169 (492)
143 KOG0374 Serine/threonine speci 88.1 0.54 1.2E-05 49.6 4.2 206 5-235 60-279 (331)
144 KOG3662 Cell division control 87.9 1.2 2.5E-05 48.1 6.5 46 31-76 92-143 (410)
145 cd07381 MPP_CapA CapA and rela 87.8 31 0.00066 34.3 17.9 98 14-129 22-142 (239)
146 smart00854 PGA_cap Bacterial c 86.8 35 0.00077 33.9 18.4 106 5-128 1-137 (239)
147 COG1692 Calcineurin-like phosp 85.9 5.8 0.00013 39.8 9.6 106 4-124 1-114 (266)
148 PRK09420 cpdB bifunctional 2', 85.7 6.2 0.00013 45.6 11.3 113 3-126 25-182 (649)
149 PRK11907 bifunctional 2',3'-cy 85.5 3.3 7.1E-05 48.9 9.0 112 3-126 115-273 (814)
150 PF04042 DNA_pol_E_B: DNA poly 82.0 3.4 7.4E-05 40.1 6.4 115 6-126 1-137 (209)
151 PLN03103 GDP-L-galactose-hexos 81.3 2.8 6.1E-05 45.1 5.8 71 410-488 169-244 (403)
152 PF05011 DBR1: Lariat debranch 80.1 1.7 3.6E-05 40.4 3.2 30 221-252 6-35 (145)
153 PLN02643 ADP-glucose phosphory 79.5 27 0.00059 37.0 12.5 75 426-500 110-196 (336)
154 COG1311 HYS2 Archaeal DNA poly 75.5 19 0.00041 39.7 9.9 208 3-250 225-463 (481)
155 COG1085 GalT Galactose-1-phosp 75.4 18 0.00038 38.3 9.4 65 424-488 93-165 (338)
156 KOG0375 Serine-threonine phosp 73.8 4.3 9.3E-05 42.7 4.3 66 5-76 89-158 (517)
157 PRK11720 galactose-1-phosphate 73.1 23 0.00049 37.8 9.8 59 426-485 108-171 (346)
158 KOG0377 Protein serine/threoni 70.9 1.2 2.7E-05 47.7 -0.3 71 4-78 165-238 (631)
159 PF09587 PGA_cap: Bacterial ca 70.7 1.2E+02 0.0026 30.3 16.7 105 5-129 1-140 (250)
160 KOG0562 Predicted hydrolase (H 66.8 4.5 9.8E-05 38.0 2.5 76 410-486 23-105 (184)
161 PF00642 zf-CCCH: Zinc finger 64.9 2.1 4.5E-05 27.8 -0.0 23 315-337 5-27 (27)
162 KOG1432 Predicted DNA repair e 63.0 21 0.00046 37.7 6.8 75 3-78 53-148 (379)
163 TIGR00209 galT_1 galactose-1-p 61.5 56 0.0012 34.8 10.0 60 426-486 108-172 (347)
164 PF13483 Lactamase_B_3: Beta-l 57.7 36 0.00079 31.4 7.0 62 114-206 102-163 (163)
165 PF10686 DUF2493: Protein of u 55.1 32 0.00069 27.9 5.2 38 3-42 3-41 (71)
166 smart00356 ZnF_C3H1 zinc finge 53.3 9.7 0.00021 24.0 1.6 21 315-336 6-26 (27)
167 KOG2720 Predicted hydrolase (H 52.5 10 0.00023 39.7 2.5 19 414-432 170-188 (431)
168 PF13277 YmdB: YmdB-like prote 50.4 35 0.00076 34.6 5.8 70 7-85 1-77 (253)
169 KOG3770 Acid sphingomyelinase 37.0 1E+02 0.0022 35.0 7.3 62 16-78 194-264 (577)
170 PF01076 Mob_Pre: Plasmid reco 34.1 1.2E+02 0.0026 29.4 6.6 53 446-498 98-153 (196)
171 KOG3818 DNA polymerase epsilon 30.4 2E+02 0.0042 31.7 7.8 42 4-45 283-326 (525)
172 KOG3243 6,7-dimethyl-8-ribityl 29.8 87 0.0019 28.5 4.3 54 29-82 73-131 (158)
173 TIGR01239 galT_2 galactose-1-p 26.9 89 0.0019 34.5 4.7 75 388-464 168-254 (489)
174 KOG1747 Protein tyrosine kinas 26.6 1.3E+02 0.0028 31.4 5.5 49 187-246 217-273 (342)
175 PTZ00235 DNA polymerase epsilo 25.8 2.2E+02 0.0048 29.6 7.1 43 3-45 27-76 (291)
176 TIGR00672 cdh CDP-diacylglycer 25.1 2.1E+02 0.0045 29.1 6.6 97 412-513 62-168 (250)
177 PRK05471 CDP-diacylglycerol py 24.8 2.1E+02 0.0046 29.0 6.6 97 412-513 63-169 (252)
178 KOG3969 Uncharacterized conser 24.3 1.3E+02 0.0029 30.8 5.0 89 400-490 157-260 (310)
179 PRK05270 galactose-1-phosphate 23.7 1.2E+02 0.0026 33.6 5.0 72 388-461 171-254 (493)
180 PF12239 DUF3605: Protein of u 21.9 1.9E+02 0.0041 27.2 5.4 69 412-481 73-155 (158)
181 PRK01395 V-type ATP synthase s 21.8 1.9E+02 0.0041 25.2 5.0 66 1-75 1-82 (104)
182 KOG0780 Signal recognition par 21.7 1.3E+02 0.0028 32.7 4.5 69 6-81 104-172 (483)
No 1
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8e-113 Score=875.59 Aligned_cols=479 Identities=44% Similarity=0.763 Sum_probs=405.1
Q ss_pred CCC--CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 1 MSP--PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 1 M~~--~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
|+. .|||||||+.|++++||+||+++++|+||||++||+|+||+. .....+|.+|.+|..++|+||||.++|...+.
T Consensus 1 Ma~~~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~-~~~~~e~~~ykng~~~vPiptY~~g~~~~~~~ 79 (528)
T KOG2476|consen 1 MAQADAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGH-DTQNAEVEKYKNGTKKVPIPTYFLGDNANETE 79 (528)
T ss_pred CCCCCceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCC-ccchhHHHHHhcCCccCceeEEEecCCCCccc
Confidence 773 599999999999999999999999999999999999999997 34467899999999999999999999986555
Q ss_pred HHHHHHhccccccCcccCCceecccEEEeCCCCeEEE-cCeEEEEEecccCCCCCCCCCCCHHHHHHHHH---hhcCCCC
Q 008383 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTL-HGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA---LAEEPGI 154 (567)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~-~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~---~~~~~~~ 154 (567)
.++.. .+|.|||+||+|||++|++++ +|++||||||.++..... ..|+.+|+++|+. ......+
T Consensus 80 ky~~n-----------~~g~Ei~~Nlt~Lg~~G~~~l~sGl~IaYLsG~e~~~~~~-~~fs~~dv~~l~~~~~~~~~~~g 147 (528)
T KOG2476|consen 80 KYFEN-----------SDGKEIAENLTYLGRKGTYKLASGLTIAYLSGPESSEKGE-SKFSQADVDELRHRLDTQKEFKG 147 (528)
T ss_pred eeccc-----------CCCcccccceeeecccceEeecCCcEEEEeeccccccccc-cccCHHHHHHHhcccccccccCC
Confidence 54442 358899999999999999985 699999999998765542 3799999999883 3345689
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCC-----CCcceeEEEE
Q 008383 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV-----DAVHVTRFLG 229 (567)
Q Consensus 155 vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~-----~~~~~TRFI~ 229 (567)
||||||++||.+|... ... .+ ......||..|++|+.++||||||+|..++||||+||+|+ ++.++||||+
T Consensus 148 vDILlTseWP~~v~e~-~ss-~~--~~~~~~gs~lvs~La~~lkPRYHFa~~~~v~YErePyrn~~~~~~~~~h~TRFI~ 223 (528)
T KOG2476|consen 148 VDILLTSEWPADVQER-NSS-LP--ESKRLCGSELVSELAAELKPRYHFAGSDGVFYEREPYRNHAALNEEAGHVTRFIA 223 (528)
T ss_pred ccEEEecCCcchhhhc-ccc-Cc--cccCCcchHHHHHHHHhcCcceEeccCCCceeecccccchhhhcccccceeeeee
Confidence 9999999999999874 111 11 1124689999999999999999999998899999999995 4789999999
Q ss_pred ccCCCCcccceeEEEeccCCCCCCccccccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCC
Q 008383 230 LAPVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGG 309 (567)
Q Consensus 230 L~~~g~~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (567)
||++||++|+||+|||++.|+.+|++.+|++.|+|+|+|||.... .. -...+|..++ ++.+++||+++++.+
T Consensus 224 LA~vGN~ek~K~lYAfs~~P~~~~~~~el~a~Ppn~~~~Py~~~d--~~-~qs~kr~~~s--~~~q~ffd~~~~~~~--- 295 (528)
T KOG2476|consen 224 LAKVGNPEKQKWLYAFSLKPMGTMELAELTAKPPNLIPNPYNLED--VA-IQSNKRPNSS--ESTQYFFDMDKQQLS--- 295 (528)
T ss_pred hhhcCCccccceeeeecccccccchhhhcccCCCccCCCCcchhh--hh-hhhccCCCCC--ccceeeeccCccccc---
Confidence 999999999999999999999999999999999999999996211 01 1234554433 244455998633222
Q ss_pred CCCCCcceeeeccCCCCCCCcccccCCchhhhhhccccchhhhccccCCCCCCcccccccCCCccccccCCcccccCCCC
Q 008383 310 GDGDKMCFKFIYSGSCPRGEKCNFRHDTDAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQNDDSQRTHRSENASANRSK 389 (567)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (567)
+.+||+...++.. +++|. +.+.++
T Consensus 296 -----------------------------------------------~~~gr~~h~~~~~-----kgpR~----p~~~pg 319 (528)
T KOG2476|consen 296 -----------------------------------------------KMNGRESHSDKSE-----KGPRK----PKIPPG 319 (528)
T ss_pred -----------------------------------------------cCCcccccccccc-----cCCCC----CCCCCC
Confidence 1122222222100 11111 335688
Q ss_pred CCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEE
Q 008383 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFF 469 (567)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g~~~v~~ 469 (567)
.||||+|||++++||||+||+++|++||||||++||||||||+|++++..+++|+++||.+|+.+|++||+++|+.+|||
T Consensus 320 ~CwFCLSnP~vEkHLIVsIG~~~YlAlaKGpLs~~HvlIipi~H~p~~~~ls~ev~~Ei~kykaal~~myk~~g~~~vvf 399 (528)
T KOG2476|consen 320 SCWFCLSNPNVEKHLIVSIGNHFYLALAKGPLSSDHVLIIPIEHIPSLVPLSAEVTQEINKYKAALRKMYKKQGKDAVVF 399 (528)
T ss_pred ceEEEecCCChhhheEEEecceeEEeecCCCCCCCeEEEEEcccccccccCCHHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCeeEEEEeecCcchhhHHHHHHHHHHHHcCCcceeccCCCCcchhhhHhhhcCCCCCeEEEEecCCceEEEEe
Q 008383 470 EWLSKRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLI 549 (567)
Q Consensus 470 E~~~~~~~H~hi~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~Yf~v~~~~~~~~~~~i 549 (567)
|+.+.++.|+|+|+||||+.....++..|..+|++++++|++.+... .+.+..+.+.+||+||+|+|+.|+|++
T Consensus 400 E~~~~rs~Hlq~Qvipvpks~s~~ik~~F~~~A~eag~ef~t~~~~~------s~~~~~n~~l~yF~vELPdg~~L~hr~ 473 (528)
T KOG2476|consen 400 ERQSYRSVHLQLQVIPVPKSSSRQIKSSFETAAEEAGLEFETYDSHS------SIKNQSNNGLPYFVVELPDGSILIHRL 473 (528)
T ss_pred EeecccceeeEEEEEeccchhhhhhhHHHHHHHHHcCceEEecCcch------hhhhhhccCCceEEEECCCCCeehhhh
Confidence 96689999999999999999999999999999999999999776533 466677778899999999999999999
Q ss_pred cCCCccccccccccccc
Q 008383 550 EENERFPAQFGREVRYA 566 (567)
Q Consensus 550 ~~~~~f~~qFgR~Vla~ 566 (567)
+.+++||+||||||||+
T Consensus 474 ~k~e~FplqFGReVlAs 490 (528)
T KOG2476|consen 474 MKNETFPLQFGREVLAS 490 (528)
T ss_pred hccCccchhhhHHHHHH
Confidence 99999999999999996
No 2
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=100.00 E-value=7.6e-45 Score=366.61 Aligned_cols=223 Identities=26% Similarity=0.446 Sum_probs=179.7
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCCCh-------------hhHHHHHHHhcccCCCCccEEEEc
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAG-PFDAVLCVGQFFPDSS-------------ELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G-pfD~vi~~GDff~~~~-------------~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
|.|+||+||+|+.++++++.++++++ ++|+|||||||+.... ..+.+|.+|++|..++|+|||||+
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 68999999999999999999998865 8999999999976521 124578899999999999999999
Q ss_pred cCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCC-----CCCCCCHHHHHHHH
Q 008383 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ-----QFGTYSQDDVDALR 146 (567)
Q Consensus 72 GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~-----~~~~~t~~dv~~L~ 146 (567)
||||+. .++..+. .|+++++||+||++++|++++|+|||||||++..... ....|+++++.++.
T Consensus 81 GNHE~~-~~l~~l~----------~gg~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~~~~~~~t~~~~rs~y 149 (262)
T cd00844 81 GNHEAS-NYLWELP----------YGGWVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGHFERPPYSEDTKRSAY 149 (262)
T ss_pred CCCCCH-HHHHhhc----------CCCeecCcEEEecCCCEEEECCeEEEEecccccccccccccccCCCCCHHHHHHhh
Confidence 999975 4555553 4679999999999999999999999999999764321 13478888887643
Q ss_pred H--------hhcCCCCccEEEeCCCCcccccccccc-------ccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008383 147 A--------LAEEPGIVDLFLTNEWPSGVTNKAAAS-------DMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (567)
Q Consensus 147 ~--------~~~~~~~vDILLTh~wP~gI~~~~~~~-------~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fy 211 (567)
. +.....+|||||||+||.||.+.++.. .+..++...+.||+.+++|++++|||||||||.|.+|
T Consensus 150 ~~r~~~~~kl~~~~~~vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~ll~~lkPryhf~gH~H~~f 229 (262)
T cd00844 150 HVRNIEVFKLKQLKQPIDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEELLKHLKPRYWFSAHLHVKF 229 (262)
T ss_pred hhhHHHHHHHHhcCCCCcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHHHHHhCCCEEEEecCCccc
Confidence 2 222245899999999999998877642 1222333347899999999999999999999999988
Q ss_pred c-cccccCC---CCcceeEEEEccCCCCccccee
Q 008383 212 A-REPYSNV---DAVHVTRFLGLAPVGNKEKQKF 241 (567)
Q Consensus 212 E-r~Py~~~---~~~~~TRFI~L~~~g~~~K~Kw 241 (567)
| ++||+|. +..++|||||||++-+ +++|
T Consensus 230 ~~~~~~~~~~~~~~~~~TRFiaL~k~~~--~~~~ 261 (262)
T cd00844 230 AALVPHENKSPGNTNKETKFLALDKCLP--GRDF 261 (262)
T ss_pred ceecCCcccccCCCCcceEEEEcccccC--CCCC
Confidence 8 5599983 3578999999999977 4444
No 3
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=100.00 E-value=3.5e-41 Score=312.25 Aligned_cols=145 Identities=50% Similarity=0.933 Sum_probs=127.8
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHhc
Q 008383 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (567)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~ 86 (567)
||+||+||+++++|++++++++|+||||++|||||||+...+ .++|.+|++|.+++|+||||++|||+
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~-~~~~~~y~~g~~~~pipTyf~ggn~~----------- 68 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDED-DEELEAYKDGSKKVPIPTYFLGGNNP----------- 68 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccc-hhhHHHHhcCCccCCCCEEEECCCCC-----------
Confidence 799999999999999999999999999999999999998655 36899999999999999999999751
Q ss_pred cccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 008383 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (567)
Q Consensus 87 ~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~g 166 (567)
++||||||+||+|
T Consensus 69 -------------------------------------------------------------------~~DILlTh~wP~g 81 (150)
T cd07380 69 -------------------------------------------------------------------GVDILLTSEWPKG 81 (150)
T ss_pred -------------------------------------------------------------------CCCEEECCCCchh
Confidence 4899999999999
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCC-----CcceeEEEEccCC
Q 008383 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD-----AVHVTRFLGLAPV 233 (567)
Q Consensus 167 I~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~-----~~~~TRFI~L~~~ 233 (567)
|.+.++... .....+.||+.|++|++++|||||||||.+.||||+||+|+. ..++||||+||++
T Consensus 82 i~~~~~~~~---~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~Pf~~~~~~~~~~~~~TRFi~La~~ 150 (150)
T cd07380 82 ISKLSKVPF---EETLLICGSDLIAELAKKLKPRYHFAGLEGVFYEREPYRNDSVLEEKAEHVTRFIGLAPV 150 (150)
T ss_pred hhhhCCCcc---cccccCCCCHHHHHHHHHcCCCeEeecCCCceEeecCccCCCccccccCcceeEEeccCC
Confidence 976554311 111247899999999999999999999999999999999985 3789999999985
No 4
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=100.00 E-value=3.8e-41 Score=337.39 Aligned_cols=227 Identities=25% Similarity=0.437 Sum_probs=184.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhh-cCCCcEEEEecCCCCC-------------ChhhHHHHHHHhcccCCCCccEEE
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKS-AGPFDAVLCVGQFFPD-------------SSELLDEFMNYVEGRSEIPIPTYF 69 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k-~GpfD~vi~~GDff~~-------------~~~~~~~~~~~l~g~~~~p~ptyf 69 (567)
|||.|-|++||.++.+++.+..++++ ++|+|++||||||++. .+..+.+|..|++|+.++|+||+|
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 79999999999999999999999887 4599999999999774 245688999999999999999999
Q ss_pred EccCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCC-----CCCCCC------
Q 008383 70 IGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQ-----QFGTYS------ 138 (567)
Q Consensus 70 v~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~-----~~~~~t------ 138 (567)
|+||||. ..++.+|+ .|||+++||+|||.+||++++|+||||+||++..... .+..|+
T Consensus 81 IGGNHEA-snyL~eLp----------yGGwVApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh~E~ppyn~stiRs 149 (456)
T KOG2863|consen 81 IGGNHEA-SNYLQELP----------YGGWVAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGHFEWPPYNNSTIRS 149 (456)
T ss_pred ecCchHH-HHHHHhcc----------cCceeccceEEeeecceEEECCEEEeeccchhhhhhcccCCCCCCCccchhhhh
Confidence 9999996 46777776 4789999999999999999999999999999764221 133333
Q ss_pred -----HHHHHHHHHhhcCCCCccEEEeCCCCcccccccccc-------ccccccCCCCCCcHHHHHHHHHhCCCEEEEcc
Q 008383 139 -----QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAAS-------DMLVGISDSSNTDSTVSELVAEIKPRYHIAGS 206 (567)
Q Consensus 139 -----~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~~~~-------~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh 206 (567)
..|+..|+++ ..+|||+|||+||.||..+++.. .+.++++....||+++.+|++++||+|||++|
T Consensus 150 iYHvR~~dV~~Lkql---k~piDIfLSHDWP~GI~~yGd~~~LLr~KPFFrqeie~~~LGSp~~~eLL~~LkP~yWfsAH 226 (456)
T KOG2863|consen 150 IYHVRISDVAKLKQL---KHPIDIFLSHDWPRGIYYYGDKKQLLRLKPFFRQEIEEGKLGSPALEELLEDLKPQYWFSAH 226 (456)
T ss_pred hhhhhhhhhHHHHhh---cCcceEEeecCCCcchhhcCCHHHHHhcCcHHHHHHhcCCcCChHHHHHHHHhCcchhhhhh
Confidence 4445555555 58999999999999999887653 24556666789999999999999999999999
Q ss_pred CCCccccccccCCCCcceeEEEEccCCCCcccceeEEEecc
Q 008383 207 KGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSP 247 (567)
Q Consensus 207 ~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i 247 (567)
.|+-|...-- +..+.++|.|++|+++-.. ++++.-+++
T Consensus 227 LH~KFaA~v~-H~~~~~~tkflaldKclp~--~~flqile~ 264 (456)
T KOG2863|consen 227 LHVKFAALVQ-HNKRSHVTKFLALDKCLPN--RNFLQILEI 264 (456)
T ss_pred HhhHHhhhhc-ccCcCCCcccccccccCCC--cchhhhccC
Confidence 9877665422 2237899999999999763 335444443
No 5
>KOG2477 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-40 Score=339.09 Aligned_cols=180 Identities=24% Similarity=0.470 Sum_probs=164.7
Q ss_pred CCCCCccccCCCCCCcceEEEECCEEEEEecC-CCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 008383 387 RSKECWFCLSSPSVESHLIVSVGEYYYCALPK-GPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 465 (567)
Q Consensus 387 ~~~~C~FC~~~~~~~~hliis~g~~~yl~l~k-gpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g~~ 465 (567)
..++|.||+.++..++|+|||+|..+||+||. -+|..|||+|||.+|.++..+||+++|+||++|+++|..||++.+.+
T Consensus 405 ~lD~C~rCfds~klpkhlviSlg~~tYLsLp~~~gL~~gHciIvptqH~~~t~slDEdvWDEIrnfrKcL~~Mfas~n~d 484 (628)
T KOG2477|consen 405 VLDTCPRCFDSEKLPKHLVISLGHRTYLSLPTQPGLAKGHCIIVPTQHRINTLSLDEDVWDEIRNFRKCLALMFASMNLD 484 (628)
T ss_pred HhhhchhhhcccccccceeEEeccceeEeccccCccccCceEEecccccccccccchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999997 55999999999999999999999999999999999999999999999
Q ss_pred eEEEEec-C-CCCCeeEEEEeecCcchhhHHHHHHHHHHHHcCCcceeccC-CCCcchhhhHhhhcCCCCCeEEEEecCC
Q 008383 466 AVFFEWL-S-KRGTHANLQAVPIPTSKAAAVQDIFNLAAEKLGFKFLATKS-SKSSDGRRSLRAQFDRNCSFFYVELPEG 542 (567)
Q Consensus 466 ~v~~E~~-~-~~~~H~hi~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~Yf~v~~~~~ 542 (567)
|||||.+ + .+.+|+-|||||||.+++..++.||++|+.+++.||+++.. ...+....+||+.||+++|||+|||+..
T Consensus 485 viFyE~a~~l~rrpH~~IeCIPvpqeig~map~YFKkAI~esE~Ews~~~nkkliets~k~lR~~IpKglpYfhV~Fgld 564 (628)
T KOG2477|consen 485 VIFYENAPSLQRRPHTAIECIPVPQEIGSMAPAYFKKAISESEEEWSHRKNKKLIETSKKALRKMIPKGLPYFHVWFGLD 564 (628)
T ss_pred eEEEeccCccccCCceeEEEeechHHhhhhhhHHHHHHHhhhHHHHHhhhHHHHHHhhHHHHHHhcccCCCeEEEEEecc
Confidence 9999933 2 34789999999999999999999999999999999964432 1222235789999999999999999999
Q ss_pred ceEEEEecCCCccccccccccccc
Q 008383 543 TVLSHLIEENERFPAQFGREVRYA 566 (567)
Q Consensus 543 ~~~~~~i~~~~~f~~qFgR~Vla~ 566 (567)
.||+|+|+++..||-||||+|||+
T Consensus 565 ~GfaHVIEded~fpsnfa~eViag 588 (628)
T KOG2477|consen 565 GGFAHVIEDEDGFPSNFAREVIAG 588 (628)
T ss_pred CceeeeecccccCcchHHHHHHHH
Confidence 999999999999999999999986
No 6
>PF04677 CwfJ_C_1: Protein similar to CwfJ C-terminus 1; InterPro: IPR006768 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006767 from INTERPRO, which is generally C-terminal and adjacent to this domain.
Probab=100.00 E-value=3.9e-37 Score=274.82 Aligned_cols=116 Identities=43% Similarity=0.850 Sum_probs=110.7
Q ss_pred ccCCCCCCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcC
Q 008383 384 SANRSKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQG 463 (567)
Q Consensus 384 ~~~~~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g 463 (567)
..+.+++||||++||++++|||||+|+++||++|||||.+||+||||++|++|+.++|+++|+||++|+++|++||+++|
T Consensus 6 ~~~~~~~C~fCl~n~~~~khliisiG~~~YLalpkg~L~~gH~lIvPi~H~~s~~~~de~~~~Ei~~f~~~L~~mf~~~~ 85 (121)
T PF04677_consen 6 QNKAPDNCWFCLSNPNVEKHLIISIGDEVYLALPKGPLVPGHCLIVPIQHVPSLTELDEEVWEEIRNFQKSLRKMFASQG 85 (121)
T ss_pred cCCCCCCCCCccCCCCccceEEEEEcCcEEEEeCCCCccCCEEEEEecceecccccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEecCCCCCeeEEEEeecCcchhhHHHHHHH
Q 008383 464 KEAVFFEWLSKRGTHANLQAVPIPTSKAAAVQDIFN 499 (567)
Q Consensus 464 ~~~v~~E~~~~~~~H~hi~~vPvp~~~~~~~~~~F~ 499 (567)
+++||||....+..|+||||||||++++++++.|||
T Consensus 86 ~~vvf~E~~~~~~~H~~iq~vPvp~~~~~~~~~yFk 121 (121)
T PF04677_consen 86 KDVVFFERVRKRNPHTHIQCVPVPKELGEKAPSYFK 121 (121)
T ss_pred CCEEEEEEeCCCCcEEEEEEEEcCHHHHHhhhhhcC
Confidence 999999944666899999999999999999999996
No 7
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.87 E-value=8e-21 Score=187.72 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=135.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHH
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~ 82 (567)
.+|||+++|+||++..+-+.++.+ ++. .+|+||++||+...... .+++.+++.-...++.|+|+|+||||.. +..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~-~~~-~~D~vv~~GDl~~~g~~-~~~~~~~l~~l~~l~~pv~~V~GNhD~~--v~~ 78 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLA-PET-GADAIVLIGNLLPKAAK-SEDYAAFFRILGEAHLPTFYVPGPQDAP--LWE 78 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHH-hhc-CCCEEEECCCCCCCCCC-HHHHHHHHHHHHhcCCceEEEcCCCChH--HHH
Confidence 589999999999998765444433 223 48999999999664311 2234444433356778999999999854 344
Q ss_pred HHhccccccCcccCCceecccEEEeCCCCeEEEcC-eEEEEEecccCCCCCCCCCCCHHHH--------HH-HHHhhcCC
Q 008383 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQFGTYSQDDV--------DA-LRALAEEP 152 (567)
Q Consensus 83 ~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~~~~~t~~dv--------~~-L~~~~~~~ 152 (567)
.+... .....+-|+...|+. +++++.| ++|+|+||+..++ .+++|+++ +. |..+....
T Consensus 79 ~l~~~-------~~~~~~~p~~~~lh~-~~~~~~g~~~~~GlGGs~~~~----~e~sE~e~~~~~~~~~~~~l~~~~~~~ 146 (224)
T cd07388 79 YLREA-------YNAELVHPEIRNVHE-TFAFWRGPYLVAGVGGEIADE----GEPEEHEALRYPAWVAEYRLKALWELK 146 (224)
T ss_pred HHHHH-------hcccccCccceecCC-CeEEecCCeEEEEecCCcCCC----CCcCHHHHhhhhhhHHHHHHHHHHhCC
Confidence 33310 011122355566775 5667755 8999999997653 46688873 22 22232234
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccC
Q 008383 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAP 232 (567)
Q Consensus 153 ~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~ 232 (567)
...||||||.||+|+. ..++||+++++++++.+|++++|||.|.-+| +...|.+||.|+
T Consensus 147 ~~~~VLv~H~PP~g~g-------------~~h~GS~alr~~I~~~~P~l~i~GHih~~~~--------~~g~t~vvNpg~ 205 (224)
T cd07388 147 DYRKVFLFHTPPYHKG-------------LNEQGSHEVAHLIKTHNPLVVLVGGKGQKHE--------LLGASWVVVPGD 205 (224)
T ss_pred CCCeEEEECCCCCCCC-------------CCccCHHHHHHHHHHhCCCEEEEcCCceeEE--------EeCCEEEECCCc
Confidence 5699999999999982 0379999999999999999999999773333 456799999999
Q ss_pred CCC
Q 008383 233 VGN 235 (567)
Q Consensus 233 ~g~ 235 (567)
+..
T Consensus 206 ~~~ 208 (224)
T cd07388 206 LSE 208 (224)
T ss_pred ccC
Confidence 754
No 8
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=99.87 E-value=2.1e-20 Score=180.45 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=143.3
Q ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCC--C--CChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 1 MSPPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFF--P--DSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 1 M~~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff--~--~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|.+||||++.|.||+...+-+-+.....+ .+|+++++||+- . +.....+++. +.......+|+|+++||+|
T Consensus 1 ~~~mkil~vtDlHg~~~~~~k~~~~~~~~--~~D~lviaGDlt~~~~~~~~~~~~~~~--~e~l~~~~~~v~avpGNcD- 75 (226)
T COG2129 1 IKKMKILAVTDLHGSEDSLKKLLNAAADI--RADLLVIAGDLTYFHFGPKEVAEELNK--LEALKELGIPVLAVPGNCD- 75 (226)
T ss_pred CCcceEEEEeccccchHHHHHHHHHHhhc--cCCEEEEecceehhhcCchHHHHhhhH--HHHHHhcCCeEEEEcCCCC-
Confidence 66899999999999987655444443333 589999999985 3 2222222210 2223567799999999987
Q ss_pred hHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHH-hh-cCCCC
Q 008383 77 AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LA-EEPGI 154 (567)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~-~~-~~~~~ 154 (567)
+..+...+... .-|++ ..+.+++|+.|.++||+.++++++.++|+|+++..... +. .....
T Consensus 76 ~~~v~~~l~~~-------------~~~v~----~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~ 138 (226)
T COG2129 76 PPEVIDVLKNA-------------GVNVH----GRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNP 138 (226)
T ss_pred hHHHHHHHHhc-------------ccccc----cceEEecCcEEEEecccCCCCCCCccccCHHHHHHHHHHHHhcccCc
Confidence 55666655411 23333 26778999999999999999999999999999886443 32 11122
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCC
Q 008383 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (567)
Q Consensus 155 vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g 234 (567)
+-||+||.||+|..... |.+ ..++||.+|+++++++||+.++|||.|.. +-.+..+.|.|||.|+.+
T Consensus 139 ~~Il~~HaPP~gt~~d~-----~~g--~~hvGS~~vr~~ieefqP~l~i~GHIHEs------~G~d~iG~TivVNPG~~~ 205 (226)
T COG2129 139 VNILLTHAPPYGTLLDT-----PSG--YVHVGSKAVRKLIEEFQPLLGLHGHIHES------RGIDKIGNTIVVNPGPLG 205 (226)
T ss_pred ceEEEecCCCCCccccC-----CCC--ccccchHHHHHHHHHhCCceEEEeeeccc------ccccccCCeEEECCCCcc
Confidence 22999999999996542 222 14899999999999999999999996631 222367789999999965
No 9
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.83 E-value=3.1e-19 Score=170.66 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=128.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHh
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~ 85 (567)
||++||+||++..+.+ ..++ ..++|+||++||+............+.+ ...++|+|+|+||||... ....+
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~--~~~~D~vv~~GDl~~~~~~~~~~~~~~l---~~~~~p~~~v~GNHD~~~-~~~~~- 71 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILK--AEEADAVIVAGDITNFGGKEAAVEINLL---LAIGVPVLAVPGNCDTPE-ILGLL- 71 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhh--ccCCCEEEECCCccCcCCHHHHHHHHHH---HhcCCCEEEEcCCCCCHH-HHHhh-
Confidence 7999999999987765 2332 3368999999999765432111111333 567899999999999642 22211
Q ss_pred ccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 008383 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (567)
Q Consensus 86 ~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~ 165 (567)
.++.+.+.+ .++.++|++|.+++|...........+++++++.+..+.......+||+||.||.
T Consensus 72 ---------------~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~ilv~H~pp~ 135 (188)
T cd07392 72 ---------------TSAGLNLHG-KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSDGRLNNLLAKNLILVTHAPPY 135 (188)
T ss_pred ---------------hcCcEecCC-CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHhhhhhccCCCCeEEEECCCCc
Confidence 234455553 5667899999999997654444445788888887633333346789999999998
Q ss_pred cc-cccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcc
Q 008383 166 GV-TNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 166 gI-~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
+. .+... . ....|+..+.++++..+|+++||||.|..+.. .....|.+||.|
T Consensus 136 ~~~~d~~~-----~---~~~~g~~~l~~li~~~~~~~~l~GH~H~~~~~------~~~~~~~~~n~G 188 (188)
T cd07392 136 GTAVDRVS-----G---GFHVGSKAIRKFIEERQPLLCICGHIHESRGV------DKIGNTLVVNPG 188 (188)
T ss_pred CCcccccC-----C---CCccCCHHHHHHHHHhCCcEEEEeccccccce------eeeCCeEEecCC
Confidence 84 32211 0 12479999999999999999999998765431 134568999876
No 10
>PRK10687 purine nucleoside phosphoramidase; Provisional
Probab=99.64 E-value=7.1e-16 Score=137.97 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-----c
Q 008383 388 SKECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-----Q 462 (567)
Q Consensus 388 ~~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~-----~ 462 (567)
.++|.||.+.......-+|++++.++++++..|+++||+||||++|++++.+++++++.++..+.+.++++.++ .
T Consensus 2 ~~~CiFC~I~~g~~p~~~v~edd~~~aflD~~P~~~GH~LViPK~H~~~l~dl~~~~~~~l~~l~~~~~~~~~~~~~~~~ 81 (119)
T PRK10687 2 AEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIPNILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAED 81 (119)
T ss_pred CCCCchhhhhcCCCCCCEEEECCCEEEEEcCCCCCCccEEEEehhHhCChhHCChHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35799998654433345789999999999999999999999999999999999999999999998877776543 2
Q ss_pred CCceEEEE--ecCCCCCeeEEEEeecCc
Q 008383 463 GKEAVFFE--WLSKRGTHANLQAVPIPT 488 (567)
Q Consensus 463 g~~~v~~E--~~~~~~~H~hi~~vPvp~ 488 (567)
|+.+++.. ..++...|+|+|+||...
T Consensus 82 g~~l~~n~G~~agQ~V~HlHiHvI~g~~ 109 (119)
T PRK10687 82 GYRLIMNTNRHGGQEVYHIHMHLLGGRP 109 (119)
T ss_pred ceEEEEeCCCcCCcccCEEEEEECCCcc
Confidence 44444443 233446899999999754
No 11
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=99.60 E-value=7.9e-14 Score=134.62 Aligned_cols=199 Identities=18% Similarity=0.231 Sum_probs=120.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHH--------------------------HHHHh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDE--------------------------FMNYV 57 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~--------------------------~~~~l 57 (567)
-|||+++|.+|+++.|-+.+..+..+. .|+|+.+||+...... .++ +..++
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~--~D~~v~~G~~~~~~a~-~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff 82 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKG--PDAVVFVGDLLKAEAR-SDEYERAQEEQREPDKSEINEEECYDSEALDKFF 82 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT---SEEEEES-SS-TCHH-HHHHHHHHHTT----THHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccC--CCEEEEeccccccchh-hhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHH
Confidence 499999999999998887788777773 6999999999764221 112 22455
Q ss_pred cccCCCCccEEEEccCCCChHHH-HHHHhccccccCcccCCceecccEEEeCCCCeEEEcC-eEEEEEecccCCCCCC--
Q 008383 58 EGRSEIPIPTYFIGDYGVGAAKV-LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHG-LSVAYLSGRQSSEGQQ-- 133 (567)
Q Consensus 58 ~g~~~~p~ptyfv~GN~~~~~~~-~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~G-lrIa~lgG~~~~~~~~-- 133 (567)
.-...+++||++||||+|.+.+. +..+. +..-+-+|++.+++ +++.+.| +-|+|+||........
T Consensus 83 ~~L~~~~~p~~~vPG~~Dap~~~~lr~a~----------~~e~v~p~~~~vH~-sf~~~~g~y~v~G~GGeI~~~~~~~~ 151 (255)
T PF14582_consen 83 RILGELGVPVFVVPGNMDAPERFFLREAY----------NAEIVTPHIHNVHE-SFFFWKGEYLVAGMGGEITDDQREEE 151 (255)
T ss_dssp HHHHCC-SEEEEE--TTS-SHHHHHHHHH----------HCCCC-TTEEE-CT-CEEEETTTEEEEEE-SEEESSS-BCS
T ss_pred HHHHhcCCcEEEecCCCCchHHHHHHHHh----------ccceeccceeeeee-eecccCCcEEEEecCccccCCCcccc
Confidence 54578999999999999987653 34333 12236799999994 7777887 9999999985432221
Q ss_pred -C--CCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008383 134 -F--GTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (567)
Q Consensus 134 -~--~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (567)
. .++-+.+- .|+.+......--|||+|.+|. +. . + ..++||.++++|++..+|+..+|||.|.-
T Consensus 152 ~~LrYP~weaey-~lk~l~elk~~r~IlLfhtpPd-~~---k------g--~~h~GS~~V~dlIk~~~P~ivl~Ghihe~ 218 (255)
T PF14582_consen 152 FKLRYPAWEAEY-SLKFLRELKDYRKILLFHTPPD-LH---K------G--LIHVGSAAVRDLIKTYNPDIVLCGHIHES 218 (255)
T ss_dssp SS-EEEHHHHHH-HHGGGGGCTSSEEEEEESS-BT-BC---T------C--TBTTSBHHHHHHHHHH--SEEEE-SSS-E
T ss_pred ccccchHHHHHH-HHHHHHhcccccEEEEEecCCc-cC---C------C--cccccHHHHHHHHHhcCCcEEEecccccc
Confidence 1 11112221 2443433334578999999992 11 1 1 24799999999999999999999997654
Q ss_pred cccccccCCCCcceeEEEEccCCCC
Q 008383 211 YAREPYSNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 211 yEr~Py~~~~~~~~TRFI~L~~~g~ 235 (567)
-..+ ....|-.||.|.+.-
T Consensus 219 ~~~e------~lG~TlVVNPGsL~~ 237 (255)
T PF14582_consen 219 HGKE------SLGKTLVVNPGSLAE 237 (255)
T ss_dssp E--E------EETTEEEEE--BGGG
T ss_pred hhhH------HhCCEEEecCccccc
Confidence 3222 466899999999854
No 12
>COG0537 Hit Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only]
Probab=99.58 E-value=8.2e-15 Score=134.51 Aligned_cols=99 Identities=21% Similarity=0.205 Sum_probs=79.6
Q ss_pred CCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHH----HHhcCCc
Q 008383 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMY----YKNQGKE 465 (567)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~----~~~~g~~ 465 (567)
.|.||..-.......+|+++++++++++..|.++||+||||++|+.++.+++++++.+|....+.+.+. |.+.|+.
T Consensus 2 ~ciFc~ii~~e~~~~~Vye~~~~~afld~~P~~~gH~LviPk~h~~~l~~l~~~~~~~l~~~~~~ia~al~~~~~~~g~n 81 (138)
T COG0537 2 MCIFCKIIRGEIPANKVYEDEHVLAFLDIYPAAPGHTLVIPKRHVSDLEDLDPEELAELFLLAQKIAKALKEAFGADGYN 81 (138)
T ss_pred CceeeeeecCCCCceEEEeCCCEEEEecCCCCCCCeEEEEeccchhhhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCceE
Confidence 699998543333456899999999999999999999999999999999999999999998876555554 4456776
Q ss_pred eEEEE--ecCCCCCeeEEEEeecCc
Q 008383 466 AVFFE--WLSKRGTHANLQAVPIPT 488 (567)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPvp~ 488 (567)
++.+- .+++-..|+|+|+||+..
T Consensus 82 i~~N~g~~agq~V~HlH~HvIPr~~ 106 (138)
T COG0537 82 IGINNGKAAGQEVFHLHIHIIPRYK 106 (138)
T ss_pred EEEecCcccCcCcceEEEEEcCCcC
Confidence 65553 234447899999999865
No 13
>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.
Probab=99.54 E-value=3.8e-14 Score=128.17 Aligned_cols=99 Identities=23% Similarity=0.268 Sum_probs=78.1
Q ss_pred CccccCCC-CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCc
Q 008383 391 CWFCLSSP-SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKE 465 (567)
Q Consensus 391 C~FC~~~~-~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~----~g~~ 465 (567)
|.||.... +.+...||++++.++++++..|.++||+||||++|+.++.+++++++.+|..+.+.+.+.+++ .++.
T Consensus 1 C~fC~i~~~e~~~~~iv~e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (126)
T cd01275 1 CVFCDIPIKPDEDNLVFYRTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLVQLAMKALKVVYKPDGFN 80 (126)
T ss_pred CccccCccCCCccccEEEeCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 99998653 332267899999999999999999999999999999999999999999999988766666554 3444
Q ss_pred eEEEE--ecCCCCCeeEEEEeecCcc
Q 008383 466 AVFFE--WLSKRGTHANLQAVPIPTS 489 (567)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPvp~~ 489 (567)
+++.. ..++...|+|+|+||+...
T Consensus 81 ~~~~~g~~~gq~v~H~HiHiiPR~~~ 106 (126)
T cd01275 81 IGINDGKAGGGIVPHVHIHIVPRWNG 106 (126)
T ss_pred EEEeCCcccCCCcCEEEEEEeCCcCC
Confidence 44333 1233468999999998654
No 14
>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides. This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.
Probab=99.53 E-value=6.3e-14 Score=121.78 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=76.1
Q ss_pred CCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hcCCc
Q 008383 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK----NQGKE 465 (567)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~----~~g~~ 465 (567)
+|.||....+-....+|++++.+++++|..|..+||+||+|++|+.++.+++++++.++....+.+.+.+. ..++.
T Consensus 1 ~C~~c~ii~~e~~~~iv~e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~~~~~~v~~~l~~~~~~~~~n 80 (103)
T cd01277 1 DCIFCKIIAGEIPSYKVYEDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELILAAKKVARALKKALKADGLN 80 (103)
T ss_pred CCccccccCCCCCCCEEEeCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 59999864332223489999999999999999999999999999999999999999998887766655544 34566
Q ss_pred eEEEE--ecCCCCCeeEEEEeec
Q 008383 466 AVFFE--WLSKRGTHANLQAVPI 486 (567)
Q Consensus 466 ~v~~E--~~~~~~~H~hi~~vPv 486 (567)
.++.+ ...+...|+|+|++|+
T Consensus 81 ~~~~~~~~~g~~~~H~HiHiiPR 103 (103)
T cd01277 81 ILQNNGRAAGQVVFHVHVHVIPR 103 (103)
T ss_pred EEEeCCcccCcccCEEEEEEccC
Confidence 55554 1223368999999996
No 15
>cd01276 PKCI_related Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.
Probab=99.47 E-value=1.7e-13 Score=119.52 Aligned_cols=97 Identities=21% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-----CC
Q 008383 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-----GK 464 (567)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~-----g~ 464 (567)
+|+||....+-....||++++.+++++|..|.++||+||||++|++++.+++++.+.++..+.+.++++.+.. |+
T Consensus 1 ~C~fc~i~~~e~~~~iv~e~~~~~a~~~~~p~~~gh~lIiPk~H~~~~~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (104)
T cd01276 1 DCIFCKIIRGEIPAKKVYEDDEVLAFHDINPQAPVHILVIPKKHIASLSDATEEDEELLGHLLSAAAKVAKDLGIAEDGY 80 (104)
T ss_pred CCcceecccCCCccCEEEECCCEEEEECCCCCCCCEEEEEecceeCChHHcccccHHHHHHHHHHHHHHHHHhCCCCCCE
Confidence 5999986543223568999999999999999999999999999999999998888777777766665554433 34
Q ss_pred ceEEEE--ecCCCCCeeEEEEeec
Q 008383 465 EAVFFE--WLSKRGTHANLQAVPI 486 (567)
Q Consensus 465 ~~v~~E--~~~~~~~H~hi~~vPv 486 (567)
++++.. ...+...|+|+|+|+.
T Consensus 81 n~~~~~g~~~g~~v~H~HiHii~~ 104 (104)
T cd01276 81 RLVINCGKDGGQEVFHLHLHLLGG 104 (104)
T ss_pred EEEEeCCCCCCCceeEEEEEEeCC
Confidence 443333 1223357999999973
No 16
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.43 E-value=7.4e-12 Score=124.52 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=113.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHH---
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKV--- 80 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~--- 80 (567)
.||+++||+||++... .++.+++ . .+|+||++||+.... . ++.+.+ ..++.|+|+|.||||.....
T Consensus 1 ~rIa~isDiHg~~~~~--~~~~l~~-~-~pD~Vl~~GDi~~~~---~-~~~~~l---~~l~~p~~~V~GNHD~~~~~~~~ 69 (238)
T cd07397 1 LRIAIVGDVHGQWDLE--DIKALHL-L-QPDLVLFVGDFGNES---V-QLVRAI---SSLPLPKAVILGNHDAWYDATFR 69 (238)
T ss_pred CEEEEEecCCCCchHH--HHHHHhc-c-CCCEEEECCCCCcCh---H-HHHHHH---HhCCCCeEEEcCCCccccccccc
Confidence 4899999999997652 2334443 2 479999999997532 2 333333 45678999999999853210
Q ss_pred --HHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEeccc-CCCCCC-------CCCC---CHHH-HHHHH
Q 008383 81 --LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ-SSEGQQ-------FGTY---SQDD-VDALR 146 (567)
Q Consensus 81 --~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~-~~~~~~-------~~~~---t~~d-v~~L~ 146 (567)
.+.+.. .-+...+. ++. .+.+++..+.++.+|+.- +.+... +..| |-+| ++.+.
T Consensus 70 ~k~~~l~~----------~L~~lg~~-~l~-~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~iv 137 (238)
T cd07397 70 KKGDRVQE----------QLELLGDL-HCG-WGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRII 137 (238)
T ss_pred chHHHHHH----------HHHHhCCc-EEe-ecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHH
Confidence 111110 00111111 222 123345554555555541 111110 0112 2222 33322
Q ss_pred Hhh--cCCCCccEEEeCCCCccccccccc----cccccccCCCCCCcHHHHHHHHHhC----CCEEEEccCCCc--cc--
Q 008383 147 ALA--EEPGIVDLFLTNEWPSGVTNKAAA----SDMLVGISDSSNTDSTVSELVAEIK----PRYHIAGSKGVF--YA-- 212 (567)
Q Consensus 147 ~~~--~~~~~vDILLTh~wP~gI~~~~~~----~~~~~~~~~~~~Gs~~i~~l~~~lk----PRYhf~Gh~~~f--yE-- 212 (567)
+.+ ......+|||||..|.|..+.... .+.+. ...+|++-+++.+..++ |+||++||.|.- |.
T Consensus 138 e~~~~~~~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~---~~~~G~~~l~~ai~~~~~~~~~~l~~fGH~H~~l~~~~~ 214 (238)
T cd07397 138 AAAKKAPPDLPLILLAHNGPSGLGSDAEDPCGRDWKPP---GGDWGDPDLALAISQIQQGRQVPLVVFGHMHHRLRRGKG 214 (238)
T ss_pred HHhhhcCCCCCeEEEeCcCCcCCCcccccccccccCCc---CCCCCCHHHHHHHHHHhccCCCCEEEeCCccCccccccc
Confidence 222 234567999999999999654332 11221 24689999999998888 999999996533 22
Q ss_pred -cccccCCCCcceeEEEEccCCC
Q 008383 213 -REPYSNVDAVHVTRFLGLAPVG 234 (567)
Q Consensus 213 -r~Py~~~~~~~~TRFI~L~~~g 234 (567)
|..+.. ....|.|||-|.+-
T Consensus 215 ~r~~~~~--~~~gt~y~N~a~~p 235 (238)
T cd07397 215 LRNMIAV--DREGTVYLNAASVP 235 (238)
T ss_pred ccceeee--cCCCeEEEeccccc
Confidence 222212 34579999988763
No 17
>PF01230 HIT: HIT domain; InterPro: IPR001310 The Histidine Triad (HIT) motif, His-x-His-x-His-x-x (x, a hydrophobic amino acid) was identified as being highly conserved in a variety of organisms []. Crystal structure of rabbit Hint, purified as an adenosine and AMP-binding protein, showed that proteins in the HIT superfamily are conserved as nucleotide-binding proteins and that Hint homologues, which are found in all forms of life, are structurally related to Fhit homologues and GalT-related enzymes, which have more restricted phylogenetic profiles []. Hint homologues including rabbit Hint and yeast Hnt1 hydrolyse adenosine 5' monophosphoramide substrates such as AMP-NH2 and AMP-lysine to AMP plus the amine product and function as positive regulators of Cdk7/Kin28 in vivo []. Fhit homologues are diadenosine polyphosphate hydrolases [] and function as tumour suppressors in human and mouse [] though the tumour suppressing function of Fhit does not depend on ApppA hydrolysis []. The third branch of the HIT superfamily, which includes GalT homologues, contains a related His-X-His-X-Gln motif and transfers nucleoside monophosphate moieties to phosphorylated second substrates rather than hydrolysing them [].; PDB: 3LB5_B 1EMS_A 1Y23_A 3ANO_B 1KPE_B 1KPC_A 4EQE_B 1KPA_A 1KPB_B 4EQG_B ....
Probab=99.38 E-value=1.7e-12 Score=112.06 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=68.8
Q ss_pred cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCCceEEEE--ecCCC
Q 008383 402 SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGKEAVFFE--WLSKR 475 (567)
Q Consensus 402 ~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~----~g~~~v~~E--~~~~~ 475 (567)
...||++++.++++++..|.++||+||||++|+.++.+++++++.+|....+.+.+.++. .|+.++... ..++.
T Consensus 5 ~~~vv~e~~~~~~~~~~~p~~~gh~LVipk~H~~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~g~~~gq~ 84 (98)
T PF01230_consen 5 PARVVYEDDHFVAFLDIFPISPGHLLVIPKRHVESLSDLPPEERAELMQLVQKVAKALKEAFGPDGYNVIINNGPAAGQS 84 (98)
T ss_dssp HCEEEEE-SSEEEEEESSTSSTTEEEEEESSTGSSGGGSHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESGGGTSS
T ss_pred CeeEEEECCCEEEEEcCCCCCCeEEEEEecccccchhcCCHHHHHHHHHHHHHHHHHHhcccccceeeccccchhhhcCc
Confidence 345899999999999999999999999999999999999999999999888777766554 344444443 23344
Q ss_pred CCeeEEEEeecC
Q 008383 476 GTHANLQAVPIP 487 (567)
Q Consensus 476 ~~H~hi~~vPvp 487 (567)
..|+|+|+||+.
T Consensus 85 v~HlH~HviPR~ 96 (98)
T PF01230_consen 85 VPHLHFHVIPRY 96 (98)
T ss_dssp SSS-EEEEEEES
T ss_pred cCEEEEEEeccc
Confidence 689999999975
No 18
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.37 E-value=6.8e-12 Score=114.53 Aligned_cols=133 Identities=20% Similarity=0.297 Sum_probs=92.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCcc-EEEEccCCCChHHHHH
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAKVLL 82 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~p-tyfv~GN~~~~~~~~~ 82 (567)
||+++||+||++. .++ ..+.|+||++||++.... ...+.+.+++ .+.+.+ +++|.||||..
T Consensus 1 ~i~~isD~H~~~~-------~~~--~~~~D~vi~~GD~~~~~~~~~~~~~~~~l---~~~~~~~~~~v~GNHD~~----- 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TIS--IPDGDVLIHAGDLTERGTLEELQKFLDWL---KSLPHPHKIVIAGNHDLT----- 63 (135)
T ss_pred CEEEEeCCCCCCC-------cCc--CCCCCEEEECCCCCCCCCHHHHHHHHHHH---HhCCCCeEEEEECCCCCc-----
Confidence 6999999999976 111 235899999999976432 1222344444 444455 58899999721
Q ss_pred HHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 008383 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (567)
Q Consensus 83 ~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~ 162 (567)
. . ..+.+||+||.
T Consensus 64 --------------~----~-------------------------------------------------~~~~~ilv~H~ 76 (135)
T cd07379 64 --------------L----D-------------------------------------------------PEDTDILVTHG 76 (135)
T ss_pred --------------C----C-------------------------------------------------CCCCEEEEECC
Confidence 0 0 03579999999
Q ss_pred CCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcc
Q 008383 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 163 wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
+|.++.+.... ....|+..+.++++..+|+|+|+||.|..+-.. .+ ......|.+||.|
T Consensus 77 ~p~~~~~~~~~--------~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~-~~-~~~~~~t~~in~~ 135 (135)
T cd07379 77 PPYGHLDLVSS--------GQRVGCEELLNRVQRVRPKLHVFGHIHEGYGAE-RV-LDTDGETLFVNAS 135 (135)
T ss_pred CCCcCcccccc--------CcccCCHHHHHHHHHHCCcEEEEcCcCCcCcee-Ee-cccCCCEEEEeCC
Confidence 99987543221 136899999999999999999999988665321 12 1245689999975
No 19
>PF04676 CwfJ_C_2: Protein similar to CwfJ C-terminus 2; InterPro: IPR006767 This group of sequences contain a conserved C-terminal domain which is found in the Schizosaccharomyces pombe (Fission yeast) protein Cwf19 (Q09909 from SWISSPROT) and its homologues. Cwf19 is part of the Cdc5p complex involved in mRNA splicing []. This domain is found in association with IPR006768 from INTERPRO, which is generally N-terminal and adjacent to this domain.
Probab=99.31 E-value=1.4e-12 Score=112.84 Aligned_cols=59 Identities=36% Similarity=0.673 Sum_probs=50.3
Q ss_pred cceec--cCCCCcchhhhHhhhcCCCCCeEEEEecCCceEEEEecCCCccccccccccccc
Q 008383 508 KFLAT--KSSKSSDGRRSLRAQFDRNCSFFYVELPEGTVLSHLIEENERFPAQFGREVRYA 566 (567)
Q Consensus 508 ~~~~~--~~~~~~~~~~~l~~~~~~~~~Yf~v~~~~~~~~~~~i~~~~~f~~qFgR~Vla~ 566 (567)
||++| ++.....++.++++++++++|||+|+|+.+++|+|+|+++++||+||||+|||+
T Consensus 1 ews~n~~kk~~~~~~~~~~~~~~~~~~~Yf~V~~~~~~~~~~vie~~~~f~~qFgReVla~ 61 (98)
T PF04676_consen 1 EWSQNEKKKLIDTSKKKGLRRSIPKGFPYFHVEFPDGKGYAHVIEDEERFPLQFGREVLAG 61 (98)
T ss_pred CccccccCCcccccChHHHHHhcCCCCCEEEEEEeCCCEEEEECCcCCccCcchHHHHHHH
Confidence 57766 443333335789999999999999999999999999999999999999999985
No 20
>cd01278 aprataxin_related aprataxin related: Aprataxin, a HINT family hydrolase is mutated in ataxia oculomotor apraxia syndrome. All the members of this subgroup have the conserved HxHxHxx (where x is a hydrophobic residue) signature motif. Members of this subgroup are predominantly eukaryotic in origin.
Probab=99.29 E-value=2.6e-11 Score=105.76 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=72.3
Q ss_pred CCccccCCCC-C-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-----
Q 008383 390 ECWFCLSSPS-V-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ----- 462 (567)
Q Consensus 390 ~C~FC~~~~~-~-~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~----- 462 (567)
.|+||..... . ....||+.++.+++++|..|..+||+||||++|+.++.+++++.++++..+.+.+.+.+.+.
T Consensus 1 ~c~fc~i~~~e~~~~~~iv~~~~~~~a~~~~~p~~~~h~lIiPk~h~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~ 80 (104)
T cd01278 1 LCHFCDIAKRRDPDPEDQVYEDDRVVVFKDIYPKARHHYLVIPKEHIASLKALTKEDVPLLEHMETVGREKLLRSDNTDP 80 (104)
T ss_pred CCccccCccCCCCCCccEEEeCCCEEEEECCCCCCCceEEEEecCCCCChHHCCHhHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 4999986533 3 24679999999999999999999999999999999999999999999999987776644332
Q ss_pred -CCceEEEEecCCCCCeeEEEEe
Q 008383 463 -GKEAVFFEWLSKRGTHANLQAV 484 (567)
Q Consensus 463 -g~~~v~~E~~~~~~~H~hi~~v 484 (567)
|+.+.+.-...+...|+|+|+|
T Consensus 81 ~~~n~g~h~~p~~~v~H~H~Hvi 103 (104)
T cd01278 81 SEFRFGFHAPPFTSVSHLHLHVI 103 (104)
T ss_pred cCeEEEeCCCCCcCeeeEEEEee
Confidence 2222111111123579999997
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.25 E-value=8.9e-11 Score=117.66 Aligned_cols=200 Identities=12% Similarity=-0.023 Sum_probs=111.5
Q ss_pred EEEEEcCCCCCHH-----H-HHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 5 RILLCGDVLGRLN-----Q-LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 5 KILv~GDvhG~~~-----~-l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
||++++|+|.++. . +-..++.+++. ++|+||++||++........-+..+. ...+.|+|+++||||...
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~--~~d~vv~~GDl~~~~~~~~~~~~~l~---~~~~~pv~~v~GNHD~~~ 75 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQ--KIDHLHIAGDISNDFQRSLPFIEKLQ---ELKGIKVTFNAGNHDMLK 75 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhc--CCCEEEECCccccchhhHHHHHHHHH---HhcCCcEEEECCCCCCCC
Confidence 6999999997532 1 22223334333 48999999999874322111222221 114589999999998531
Q ss_pred H-HHHHHhccccccCcccCCceecccEEEeCCCCeE-EEcCeEEEEEecccCCCC--------------------CCCCC
Q 008383 79 K-VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEG--------------------QQFGT 136 (567)
Q Consensus 79 ~-~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~--------------------~~~~~ 136 (567)
. ....+.. . . +..+|.+..+. ..++++|.++.|-...+. .....
T Consensus 76 ~~~~~~~~~----------~--~--~~~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 141 (239)
T TIGR03729 76 DLTYEEIES----------N--D--SPLYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEILRWKKSFWFDRRIKRP 141 (239)
T ss_pred CCCHHHHHh----------c--c--chhhhcccccccCCCceEEEeeccceecccccccCHHHHHHhhhcEEeecccCCC
Confidence 1 1121210 0 0 34456544432 237899999997432110 00111
Q ss_pred -----CCHHHHHHHHHh-hcCCCCccEEEeCCCCcccccc--ccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC
Q 008383 137 -----YSQDDVDALRAL-AEEPGIVDLFLTNEWPSGVTNK--AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG 208 (567)
Q Consensus 137 -----~t~~dv~~L~~~-~~~~~~vDILLTh~wP~gI~~~--~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~ 208 (567)
+.+++++.|.+. +.....--|++||-+|...... ....... . .....||..+.++++..+|+++|+||.|
T Consensus 142 ~~~~~~~~~~l~~l~~~l~~~~~~~~ivvtH~pP~~~~~~~~~~~~~~~-~-~~~~~~s~~l~~li~~~~v~~~i~GH~H 219 (239)
T TIGR03729 142 MSDPERTAIVLKQLKKQLNQLDNKQVIFVTHFVPHRDFIYVPMDHRRFD-M-FNAFLGSQHFGQLLVKYEIKDVIFGHLH 219 (239)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCEEEEEcccchHHHhcCCCCCcchh-h-hhhccChHHHHHHHHHhCCCEEEECCcc
Confidence 223334445442 2233456899999999653210 0000000 0 0125789999999999999999999987
Q ss_pred CccccccccCCCCcceeEEEEcc
Q 008383 209 VFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 209 ~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
..+... ....||+++-.
T Consensus 220 ~~~~~~------~i~~~~~~~~~ 236 (239)
T TIGR03729 220 RRFGPL------TIGGTTYHNRP 236 (239)
T ss_pred CCCCCE------EECCEEEEecC
Confidence 653211 23579998753
No 22
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.25 E-value=3.1e-10 Score=113.16 Aligned_cols=197 Identities=16% Similarity=0.121 Sum_probs=121.4
Q ss_pred EEEEEcCCCCC------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEEc
Q 008383 5 RILLCGDVLGR------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 5 KILv~GDvhG~------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
||++++|+|=. ...+-+-++.+++...++|+||++||++.... ..-+.+.+.+ .++++|+|+|+
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l---~~~~~p~~~v~ 77 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSPESYERLRELL---AALPIPVYLLP 77 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCHHHHHHHHHHH---hhcCCCEEEeC
Confidence 68999999943 22333344555554346899999999976532 2222344444 45689999999
Q ss_pred cCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhh-c
Q 008383 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA-E 150 (567)
Q Consensus 72 GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~-~ 150 (567)
||||....+...+.. .. ..+ .+. .-.+.++|++|.+|....... ....+++++++.|++.. .
T Consensus 78 GNHD~~~~~~~~~~~---------~~---~~~-~~~--~~~~~~~~~~~i~lds~~~~~--~~~~~~~~ql~wL~~~L~~ 140 (240)
T cd07402 78 GNHDDRAAMRAVFPE---------LP---PAP-GFV--QYVVDLGGWRLILLDSSVPGQ--HGGELCAAQLDWLEAALAE 140 (240)
T ss_pred CCCCCHHHHHHhhcc---------cc---ccc-ccc--ceeEecCCEEEEEEeCCCCCC--cCCEECHHHHHHHHHHHHh
Confidence 999965433332220 00 000 001 123457899999997653321 22456777777777532 2
Q ss_pred CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeEEEE
Q 008383 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLG 229 (567)
Q Consensus 151 ~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~ 229 (567)
.....-|+++|.+|........ . . ....++..+.+++... +++++|+||.|..+.+ ....+.+++
T Consensus 141 ~~~~~~il~~H~pp~~~~~~~~----~-~--~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~-------~~~g~~~~~ 206 (240)
T cd07402 141 APDKPTLVFLHHPPFPVGIAWM----D-A--IGLRNAEALAAVLARHPNVRAILCGHVHRPIDG-------SWGGIPLLT 206 (240)
T ss_pred CCCCCEEEEECCCCccCCchhh----h-h--hhCCCHHHHHHHHhcCCCeeEEEECCcCchHHe-------EECCEEEEE
Confidence 2345679999999987632110 0 0 1235678888999988 8899999998875332 234578888
Q ss_pred ccCCCC
Q 008383 230 LAPVGN 235 (567)
Q Consensus 230 L~~~g~ 235 (567)
.+..+.
T Consensus 207 ~gs~~~ 212 (240)
T cd07402 207 APSTCH 212 (240)
T ss_pred cCccee
Confidence 887754
No 23
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=99.24 E-value=2.8e-11 Score=101.42 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=63.6
Q ss_pred EEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-cC---CceEEEE--ecCCCCCee
Q 008383 406 VSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-QG---KEAVFFE--WLSKRGTHA 479 (567)
Q Consensus 406 is~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~-~g---~~~v~~E--~~~~~~~H~ 479 (567)
|++++++++++|..|..+||+||||++|+.++.+++++++.++....+.+.+.+++ .+ ..+++.. ...+...|+
T Consensus 1 ~~e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~n~g~~~g~~v~H~ 80 (86)
T cd00468 1 VPDDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLVITAQRVAAELEKHGNVPSLTVFVNDGAAAGQSVPHV 80 (86)
T ss_pred CeecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCccCCCcCCEE
Confidence 46789999999999999999999999999999999999999999988777766643 23 2322222 122335899
Q ss_pred EEEEee
Q 008383 480 NLQAVP 485 (567)
Q Consensus 480 hi~~vP 485 (567)
|+|+||
T Consensus 81 H~hiiP 86 (86)
T cd00468 81 HLHVLP 86 (86)
T ss_pred EEEeCC
Confidence 999998
No 24
>KOG3275 consensus Zinc-binding protein of the histidine triad (HIT) family [Signal transduction mechanisms]
Probab=99.24 E-value=3.3e-11 Score=103.93 Aligned_cols=97 Identities=16% Similarity=0.155 Sum_probs=77.9
Q ss_pred CCCCccccCCC-CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccc---cCCCCCCCHHHHHHHHHHHHHHHHHHH-hc
Q 008383 388 SKECWFCLSSP-SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEH---VPNTISTSPECEKELGRFQNSLMMYYK-NQ 462 (567)
Q Consensus 388 ~~~C~FC~~~~-~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H---~~s~~~~~~~~~~E~~~~~~~L~~~~~-~~ 462 (567)
...|+||.+-. .++ .-||++++.|+++.+..|..|||.||||+.| .+...+.+++....+.-..+.+.+.+. ..
T Consensus 15 ~~~tIF~kIi~keIP-a~ii~Edd~~lAF~Di~Pqap~HfLvIPK~hi~~~s~aed~~~e~Lg~ll~~~k~vak~~Gl~~ 93 (127)
T KOG3275|consen 15 AAPTIFCKIIRKEIP-AKIIFEDDRCLAFHDIAPQAPGHFLVIPKKHITQLSKAEDRDDELLGHLLPVAKKVAKALGLED 93 (127)
T ss_pred CCCcEeeeeecccCC-cceEeeccceEEEEecCCCCCceEEEeecccccchhhcccCCHHHHHHHHHHHHHHHHHhCccc
Confidence 57899998654 344 4589999999999999999999999999999 555667788888888888887777765 45
Q ss_pred CCceEEEE-e-cCCCCCeeEEEEee
Q 008383 463 GKEAVFFE-W-LSKRGTHANLQAVP 485 (567)
Q Consensus 463 g~~~v~~E-~-~~~~~~H~hi~~vP 485 (567)
|+.+|..+ . ..+.+.|+|+|++|
T Consensus 94 gYrvv~NnG~~g~QsV~HvH~Hvlg 118 (127)
T KOG3275|consen 94 GYRVVQNNGKDGHQSVYHVHLHVLG 118 (127)
T ss_pred ceeEEEcCCcccceEEEEEEEEEeC
Confidence 78888776 2 23346899999999
No 25
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.14 E-value=1.9e-10 Score=104.93 Aligned_cols=192 Identities=12% Similarity=0.094 Sum_probs=99.0
Q ss_pred CEEEEEcCCCCCHHHH---HHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHH--hcccCCCCccEEEEccCCCChH
Q 008383 4 PRILLCGDVLGRLNQL---FKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNY--VEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l---~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~--l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
|||+++||+|+..... ...+.....+. +.|+||++||++............. .......+.|+|++.||||...
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~-~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~ 79 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAEN-KPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYS 79 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHT-TTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccC-CCCEEEeeccccccccccccchhhhccchhhhhccccccccccccccce
Confidence 6999999999998877 44555554444 5799999999987654322222211 1223557899999999999764
Q ss_pred HHHHHHhccccccCcccCCceecccEEEeCCCC-eEE-EcCeEEEEEecccCCCCCCCCCCCHHHHHH-HHHhhcCCCCc
Q 008383 79 KVLLAASKNSANQGFKMDGFKVTDNLFWLKGSG-NFT-LHGLSVAYLSGRQSSEGQQFGTYSQDDVDA-LRALAEEPGIV 155 (567)
Q Consensus 79 ~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~g-v~~-~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~-L~~~~~~~~~v 155 (567)
........... ........+..+....+ ... ............... .. .......... ...+.......
T Consensus 80 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 151 (200)
T PF00149_consen 80 GNSFYGFYDYQ-----FEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPD-YG--MEAQQEWWLWLLLLLEAKNDDP 151 (200)
T ss_dssp HHHHHHHHHHH-----HSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHH-SE--HHHHHHHHHHHHHHHHEEEESE
T ss_pred ecccccccccc-----ccccccccccccccCcceeeecccccccccccccccc-cc--cccchhcccccccccccccccc
Confidence 32221110000 00001111111111001 000 111111111110000 00 0000111111 11122233568
Q ss_pred cEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008383 156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (567)
Q Consensus 156 DILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (567)
.|+++|.+|.......... .....+...+..+.+..++.++|+||.|.|
T Consensus 152 ~iv~~H~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 152 VIVFTHHPPYSSSSDSSSY------GNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp EEEEESSSSSTTSSSTHHH------SSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred eeEEEecCCCCcccccccc------chhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 8999999999775432110 001356789999999999999999998864
No 26
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.04 E-value=7.5e-09 Score=103.43 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=101.2
Q ss_pred EEEEcCCCCCH---------H----HHHHHHHHH-HhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEc
Q 008383 6 ILLCGDVLGRL---------N----QLFKRVQSV-NKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 6 ILv~GDvhG~~---------~----~l~~kv~~l-~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
|.+++|.|-.. . ++.+++.+. ++-..+.|+||++||+...... +++.+.+......+.|+|+|+
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~--~~~~~~l~~l~~l~~~v~~V~ 78 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKL--EEAKLDLAWIDALPGTKVLLK 78 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCCh--HHHHHHHHHHHhCCCCeEEEe
Confidence 57899999652 1 333333333 2222358999999999743211 122222222245667899999
Q ss_pred cCCCCh----HHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecc-cCCCCC-----C-----CCC
Q 008383 72 DYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGR-QSSEGQ-----Q-----FGT 136 (567)
Q Consensus 72 GN~~~~----~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~-~~~~~~-----~-----~~~ 136 (567)
||||-. ..+.+.+. ++.+++.....+.+++++|.|+.+. .+.... + ...
T Consensus 79 GNHD~~~~~~~~~~~~l~----------------~~~~~~~~n~~~~~~~i~i~G~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (232)
T cd07393 79 GNHDYWWGSASKLRKALE----------------ESRLALLFNNAYIDDDVAICGTRGWDNPGNPWPPINETLKVEEDEK 142 (232)
T ss_pred CCccccCCCHHHHHHHHH----------------hcCeEEeccCcEEECCEEEEEEEeeCCCCCccccccccccchhHHH
Confidence 999941 22222222 2222222234556789999988652 221110 0 011
Q ss_pred CCHHHHHHHHHh----hcC-CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008383 137 YSQDDVDALRAL----AEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (567)
Q Consensus 137 ~t~~dv~~L~~~----~~~-~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fy 211 (567)
+..++...|... ... ..++-|+++|.+|.... .++..+.+++++..+.+.|+||.|.+.
T Consensus 143 ~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~----------------~~~~~~~~~~~~~~v~~vl~GH~H~~~ 206 (232)
T cd07393 143 IFERELERLELSLKAAKKREKEKIKIVMLHYPPANEN----------------GDDSPISKLIEEYGVDICVYGHLHGVG 206 (232)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCC----------------CCHHHHHHHHHHcCCCEEEECCCCCCc
Confidence 223344444331 111 12467999999986541 234567788888899999999999887
Q ss_pred ccccccC
Q 008383 212 AREPYSN 218 (567)
Q Consensus 212 Er~Py~~ 218 (567)
...||..
T Consensus 207 ~~~~~~~ 213 (232)
T cd07393 207 RDRAING 213 (232)
T ss_pred ccccccc
Confidence 7777743
No 27
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.01 E-value=3e-09 Score=98.39 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=88.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~ 83 (567)
|||+++||+|++.+.+-+-++.+ + ..|+||++||++.. .++.+.+. ++ |+|+|.||||... +..
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~---~-~~d~vi~~GDi~~~-----~~~~~~~~---~~--~~~~v~GNHD~~~--~~~ 64 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI---N-EPDFVIILGDIFDP-----EEVLELLR---DI--PVYVVRGNHDNWA--FPN 64 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH---T-TESEEEEES-SCSH-----HHHHHHHH---HH--EEEEE--CCHSTH--HHS
T ss_pred CEEEEEeCCCCChhHHHHHHHHh---c-CCCEEEECCCchhH-----HHHHHHHh---cC--CEEEEeCCccccc--chh
Confidence 89999999999999766555655 2 37999999999872 45555553 22 8999999998542 111
Q ss_pred HhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCC
Q 008383 84 ASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEW 163 (567)
Q Consensus 84 l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~w 163 (567)
.. ..+. +...-..++ .+..|+++|.-
T Consensus 65 ~~-----------~~~~------~~~~~~~~~-------------------------------------~~~~i~~~H~~ 90 (156)
T PF12850_consen 65 EN-----------DEEY------LLDALRLTI-------------------------------------DGFKILLSHGH 90 (156)
T ss_dssp EE-----------CTCS------SHSEEEEEE-------------------------------------TTEEEEEESST
T ss_pred hh-----------hccc------cccceeeee-------------------------------------cCCeEEEECCC
Confidence 00 0001 000000011 24678888886
Q ss_pred CccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcc
Q 008383 164 PSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (567)
Q Consensus 164 P~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~ 237 (567)
|..+. .+...+.+++...+++++|+||.|..+... ...+.++++|.++...
T Consensus 91 ~~~~~----------------~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~-------~~~~~~~~~Gs~~~~~ 141 (156)
T PF12850_consen 91 PYDVQ----------------WDPAELREILSRENVDLVLHGHTHRPQVFK-------IGGIHVINPGSIGGPR 141 (156)
T ss_dssp SSSST----------------TTHHHHHHHHHHTTSSEEEESSSSSEEEEE-------ETTEEEEEE-GSSS-S
T ss_pred Ccccc----------------cChhhhhhhhcccCCCEEEcCCcccceEEE-------ECCEEEEECCcCCCCC
Confidence 66542 344567788889999999999988765542 3359999999998644
No 28
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=99.00 E-value=3.7e-09 Score=104.75 Aligned_cols=204 Identities=16% Similarity=0.166 Sum_probs=119.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC-hhhHHHHHHHhcccCCCCcc-EEEEccCCCChHH--
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-SELLDEFMNYVEGRSEIPIP-TYFIGDYGVGAAK-- 79 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~-~~~~~~~~~~l~g~~~~p~p-tyfv~GN~~~~~~-- 79 (567)
.|..+++|.|+....+ + +--+-|+++.+|||-.-. .++...+.+.+ -++|.- -+.|.||||+..+
T Consensus 62 ~r~VcisdtH~~~~~i-------~-~~p~gDvlihagdfT~~g~~~ev~~fn~~~---gslph~yKIVIaGNHELtFd~e 130 (305)
T KOG3947|consen 62 ARFVCISDTHELTFDI-------N-DIPDGDVLIHAGDFTNLGLPEEVIKFNEWL---GSLPHEYKIVIAGNHELTFDHE 130 (305)
T ss_pred eEEEEecCcccccCcc-------c-cCCCCceEEeccCCccccCHHHHHhhhHHh---ccCcceeeEEEeeccceeeccc
Confidence 5889999999975532 2 222349999999996632 22233333332 444444 5788999987633
Q ss_pred HHHHHhc---ccccc------Ccc-cCC-ceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHh
Q 008383 80 VLLAASK---NSANQ------GFK-MDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL 148 (567)
Q Consensus 80 ~~~~l~~---~~~~~------~~~-~~~-~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~ 148 (567)
+...+-+ ++.-+ +.+ .++ ..+-.|.+||.+..| ++.|++|.+ +.+......|.++...--..|.++
T Consensus 131 f~~~~~k~~~~~~~~p~~s~l~P~a~egv~~lLTN~iYLqD~~v-tv~G~~Iyg--spw~p~~~g~~f~l~rg~~~ld~W 207 (305)
T KOG3947|consen 131 FMADLIKDEQDAYYFPGVSKLKPEAYEGVQSLLTNCIYLQDSEV-TVRGVRIYG--SPWTPLLPGWAFNLPRGQSLLDKW 207 (305)
T ss_pred ccchhhccccceecCccccccCccccccccchhceeEEEecCcE-EEEEEEEec--CCCCcccCchhhhhhhhHhhhHHH
Confidence 1110000 00000 000 111 236678999998775 788888873 222222222222221111123334
Q ss_pred hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHH-HHHHHhCCCEEEEccCCCccccccccCCCCcceeEE
Q 008383 149 AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVS-ELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRF 227 (567)
Q Consensus 149 ~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~-~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRF 227 (567)
....+++|||+||.+|.|..+... -.+....|+..+- .+...+||+||++||.|..|--. +...|+|
T Consensus 208 ~~ip~~iDvL~tHtPPlG~gd~~~------~~~gqr~GC~ell~tVe~rvqpk~hVfGhvhe~~Gvt------a~G~t~f 275 (305)
T KOG3947|consen 208 NQIPGGIDVLITHTPPLGHGDLVP------VFSGQRNGCVELLNTVERRVQPKYHVFGHVHEGHGVT------ADGYTTF 275 (305)
T ss_pred hcCccccceeccCCCCCCcchhcc------cccCcccCHHHHHHhHhhccccceEEeeeeecCceee------ecCcccc
Confidence 445789999999999999765422 0112467877654 44455999999999976654322 5678999
Q ss_pred EEccCC
Q 008383 228 LGLAPV 233 (567)
Q Consensus 228 I~L~~~ 233 (567)
||-.-+
T Consensus 276 ina~~C 281 (305)
T KOG3947|consen 276 INAELC 281 (305)
T ss_pred ccHHHh
Confidence 987765
No 29
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.97 E-value=7.1e-09 Score=94.19 Aligned_cols=68 Identities=18% Similarity=0.273 Sum_probs=49.4
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCC
Q 008383 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (567)
Q Consensus 155 vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (567)
++||++|.||.++..... ....|+..+.+++...+|+++|+||.|..+... =++ .....|++||.+-+
T Consensus 57 ~~Ilv~H~pp~~~~~~~~---------~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~~-~~~-~~~~~t~~~n~~~~ 124 (129)
T cd07403 57 VDILLTHAPPAGIGDGED---------FAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGYQ-LRI-RRVGDTTVINAYGY 124 (129)
T ss_pred cCEEEECCCCCcCcCccc---------ccccCHHHHHHHHHHHCCcEEEEcCcCCCcCcc-ccc-cccCCEEEEeCCcE
Confidence 489999999987753211 135789999999999999999999987654321 000 14678999988754
No 30
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.97 E-value=1.2e-08 Score=95.56 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=43.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|||++++|+||+...+-.-++.+. .....|.||++||+.+ .++.+++ .+...|+++|.||||.
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~-~~~~~d~ii~~GD~~~------~~~~~~l---~~~~~~~~~V~GN~D~ 63 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFN-LESNVDLVIHAGDLTS------PFVLKEF---EDLAAKVIAVRGNNDG 63 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHh-hccCCCEEEEcCCCCC------HHHHHHH---HHhCCceEEEccCCCc
Confidence 799999999999865433233333 3324899999999984 1233333 3345689999999984
No 31
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.96 E-value=4.2e-09 Score=99.38 Aligned_cols=150 Identities=9% Similarity=0.021 Sum_probs=85.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHh
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAAS 85 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~ 85 (567)
|++++|+|+++......+.+.. ...++|+|+++||++..... .++..+ ......+.|+|+++||||.
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~-~~~~~d~li~~GDi~~~~~~--~~~~~~-~~~~~~~~~v~~v~GNHD~--------- 67 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFP-IAPDADILVLAGDIGYLTDA--PRFAPL-LLALKGFEPVIYVPGNHEF--------- 67 (166)
T ss_pred CceEccccccCccccccccccC-CCCCCCEEEECCCCCCCcch--HHHHHH-HHhhcCCccEEEeCCCcce---------
Confidence 5789999999865443321111 22358999999999875322 111111 1124567899999999962
Q ss_pred ccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCc
Q 008383 86 KNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPS 165 (567)
Q Consensus 86 ~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~ 165 (567)
| ++|.|.++-.. ...+.++. +....+...+..|++||-+|.
T Consensus 68 --------------------~-----------~~~~G~~~w~~-----~~~~~~~~---~~~~~~d~~~~~vv~~HhpP~ 108 (166)
T cd07404 68 --------------------Y-----------VRIIGTTLWSD-----ISLFGEAA---ARMRMNDFRGKTVVVTHHAPS 108 (166)
T ss_pred --------------------E-----------EEEEeeecccc-----cCccchHH---HHhCCCCCCCCEEEEeCCCCC
Confidence 0 23333332111 11222332 222222334678999999998
Q ss_pred cccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008383 166 GVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (567)
Q Consensus 166 gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fy 211 (567)
........ ..... ...++..+.++++..+++++||||.|..+
T Consensus 109 ~~~~~~~~---~~~~~-~~~~~~~l~~~~~~~~v~~~i~GH~H~~~ 150 (166)
T cd07404 109 PLSLAPQY---GDSLV-NAAFAVDLDDLILADPIDLWIHGHTHFNF 150 (166)
T ss_pred ccccCccc---cCCCc-chhhhhccHhHHhhcCCCEEEECCccccc
Confidence 65321100 00100 11455667888888899999999987653
No 32
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=98.96 E-value=1.6e-09 Score=114.19 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=77.4
Q ss_pred CCCccccCC-CCC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 008383 389 KECWFCLSS-PSV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (567)
Q Consensus 389 ~~C~FC~~~-~~~-~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~-~--- 462 (567)
..|.||..- ... ....||++++++++++|..|..+||+||||++|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 194 g~clfcdIi~~E~~~~~riV~End~fvAf~p~~p~~Pgh~lIiPKrH~~~~~dl~d~e~~~La~~lk~v~~~l~~~~~~~ 273 (347)
T TIGR00209 194 KSPMLVDYVKRELADKSRTVVETEHWIAVVPYWAIWPFETLLLPKAHVLRITDLTDAQRSDLALILKKLTSKYDNLFETS 273 (347)
T ss_pred CCccHHHHHHhHhhcCCeEEEECCCEEEEeccCCCCCCeEEEeeccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 479999754 333 2457999999999999999999999999999999999999999999999888777766543 2
Q ss_pred -CCceEEEE-ecCCC---CCeeEEEEeecC
Q 008383 463 -GKEAVFFE-WLSKR---GTHANLQAVPIP 487 (567)
Q Consensus 463 -g~~~v~~E-~~~~~---~~H~hi~~vPvp 487 (567)
+++.++.- -.+.. ..|+|+|++|+-
T Consensus 274 ~pYn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (347)
T TIGR00209 274 FPYSMGWHGAPFNGEENQHWQLHAHFYPPL 303 (347)
T ss_pred CCcceeEEecccCCCCCcEEEEEEEEeCCc
Confidence 35555444 11222 358999999973
No 33
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.95 E-value=5.2e-08 Score=99.77 Aligned_cols=195 Identities=15% Similarity=0.192 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCC-C-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEE
Q 008383 3 PPRILLCGDVLG-R-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFI 70 (567)
Q Consensus 3 ~~KILv~GDvhG-~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv 70 (567)
.|||+.++|+|= . .+.+-+.++.+++...+.|+||++||+..... .+++..+.+...++++|+|++
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~v 91 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVWL 91 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEEe
Confidence 689999999991 1 22333345555554335899999999976432 223333333336678999999
Q ss_pred ccCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhh-
Q 008383 71 GDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALA- 149 (567)
Q Consensus 71 ~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~- 149 (567)
+||||....+.+.+... + +.++ ..++...+.+|..|..... ....+.+.+++++.|++..
T Consensus 92 ~GNHD~~~~~~~~~~~~---------~--~~~~------~~~~~~~~~~~i~Lds~~~--g~~~G~l~~~ql~wL~~~L~ 152 (275)
T PRK11148 92 PGNHDFQPAMYSALQDA---------G--ISPA------KHVLIGEHWQILLLDSQVF--GVPHGELSEYQLEWLERKLA 152 (275)
T ss_pred CCCCCChHHHHHHHhhc---------C--CCcc------ceEEecCCEEEEEecCCCC--CCcCCEeCHHHHHHHHHHHh
Confidence 99999754444433210 0 1111 0111223456666654321 1113456788888777532
Q ss_pred cCCCCccEEEeCCCC--ccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCccccccccCCCCcceeE
Q 008383 150 EEPGIVDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTR 226 (567)
Q Consensus 150 ~~~~~vDILLTh~wP--~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~fyEr~Py~~~~~~~~TR 226 (567)
......-|++.|..| .+..-. + . .....+..+.+++++. +.+..|+||.|..+.. ....++
T Consensus 153 ~~~~~~~vv~~hH~P~~~~~~~~-d----~----~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~-------~~~gi~ 216 (275)
T PRK11148 153 DAPERHTLVLLHHHPLPAGCAWL-D----Q----HSLRNAHELAEVLAKFPNVKAILCGHIHQELDL-------DWNGRR 216 (275)
T ss_pred hCCCCCeEEEEcCCCCCCCcchh-h----c----cCCCCHHHHHHHHhcCCCceEEEecccChHHhc-------eECCEE
Confidence 222222344444434 332110 1 0 0124567888999887 7899999998864331 123456
Q ss_pred EEEccCCC
Q 008383 227 FLGLAPVG 234 (567)
Q Consensus 227 FI~L~~~g 234 (567)
++..+..+
T Consensus 217 ~~~~ps~~ 224 (275)
T PRK11148 217 LLATPSTC 224 (275)
T ss_pred EEEcCCCc
Confidence 65544443
No 34
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=98.94 E-value=2.3e-09 Score=112.87 Aligned_cols=99 Identities=13% Similarity=0.051 Sum_probs=77.1
Q ss_pred CCCccccCCC-CCC-cceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 008383 389 KECWFCLSSP-SVE-SHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (567)
Q Consensus 389 ~~C~FC~~~~-~~~-~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~-~--- 462 (567)
..|.||.... ..+ ...||++++++++++|..|..|||+||||++|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 194 g~Clfcdii~~E~~~~~RiV~End~fvAf~p~~p~~P~h~lIiPKrH~~~~~dl~dee~~~La~~lk~v~~~l~~~~~~~ 273 (346)
T PRK11720 194 GSPLLVDYVQRELADGERIVVETEHWLAVVPYWAAWPFETLLLPKAHVLRLTDLTDAQRDDLALALKKLTSRYDNLFQCS 273 (346)
T ss_pred CCeEHHHHHHhhhhcCCeEEEECCCEEEEeccccCCCCeEEEecccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5799997543 332 247999999999999999999999999999999999999999999999887766666543 2
Q ss_pred -CCceEEEEe-cCC---CCCeeEEEEeecC
Q 008383 463 -GKEAVFFEW-LSK---RGTHANLQAVPIP 487 (567)
Q Consensus 463 -g~~~v~~E~-~~~---~~~H~hi~~vPvp 487 (567)
.+.+++... .+. ...|+|+|++|+-
T Consensus 274 ~pyn~~~h~~p~~~~~~~~~H~HihiiPrl 303 (346)
T PRK11720 274 FPYSMGWHGAPFNGEENDHWQLHAHFYPPL 303 (346)
T ss_pred CCCceeEEecccCCCCCeeEEEEEEEeCCc
Confidence 345554441 111 2479999999973
No 35
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.81 E-value=7.5e-08 Score=89.59 Aligned_cols=133 Identities=17% Similarity=0.143 Sum_probs=82.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHH
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l 84 (567)
||++++|+||+...+.+.++.+. ..|.||++||+....... . .....|+++|.||||.... +.
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~----~~d~ii~~GD~~~~~~~~--~--------~~~~~~~~~V~GNhD~~~~-~~-- 63 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFG----DVDLIIHAGDVLYPGPLN--E--------LELKAPVIAVRGNCDGEVD-FP-- 63 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhc----CCCEEEECCccccccccc--h--------hhcCCcEEEEeCCCCCcCC-cc--
Confidence 69999999999865554444432 279999999987643211 1 2234689999999984210 00
Q ss_pred hccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCC
Q 008383 85 SKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWP 164 (567)
Q Consensus 85 ~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP 164 (567)
.|....+++++ +.-|+++|.++
T Consensus 64 ---------------------~~p~~~~~~~~-------------------------------------g~~i~v~Hg~~ 85 (155)
T cd00841 64 ---------------------ILPEEAVLEIG-------------------------------------GKRIFLTHGHL 85 (155)
T ss_pred ---------------------cCCceEEEEEC-------------------------------------CEEEEEECCcc
Confidence 00001112222 34567777776
Q ss_pred ccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCc
Q 008383 165 SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNK 236 (567)
Q Consensus 165 ~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~ 236 (567)
...... ... .+++......|+++||.|..+.+ ....+++||.|.++.+
T Consensus 86 ~~~~~~----------------~~~-~~~~~~~~~d~vi~GHtH~~~~~-------~~~~~~~inpGs~~~~ 133 (155)
T cd00841 86 YGVKNG----------------LDR-LYLAKEGGADVVLYGHTHIPVIE-------KIGGVLLLNPGSLSLP 133 (155)
T ss_pred cccccc----------------hhh-hhhhhhcCCCEEEECcccCCccE-------EECCEEEEeCCCccCc
Confidence 544210 011 45566778899999998866443 2336899999999865
No 36
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.80 E-value=5.1e-08 Score=85.94 Aligned_cols=131 Identities=19% Similarity=0.242 Sum_probs=87.7
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHhc
Q 008383 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASK 86 (567)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~ 86 (567)
+++||+|+..............+..+.|+||++||++.............+........|++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD----------- 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD----------- 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce-----------
Confidence 579999999887765542223333457999999999876433222111112223668899999999983
Q ss_pred cccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 008383 87 NSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (567)
Q Consensus 87 ~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~g 166 (567)
|+++|.+|..
T Consensus 70 ----------------------------------------------------------------------i~~~H~~~~~ 79 (131)
T cd00838 70 ----------------------------------------------------------------------ILLTHGPPYD 79 (131)
T ss_pred ----------------------------------------------------------------------EEEeccCCCC
Confidence 8899999977
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcc
Q 008383 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 167 I~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
....... ........+..++...+|.++|+||.|.++...+ ....+++|++|
T Consensus 80 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~~-----~~~~~~~v~~g 131 (131)
T cd00838 80 PLDELSP--------DEDPGSEALLELLEKYGVDLVLSGHTHVYERREP-----DGGGTLYINPG 131 (131)
T ss_pred Cchhhcc--------cchhhHHHHHHHHHHhCCCEEEeCCeeccccccC-----CCCceEEecCC
Confidence 6543221 0122578899999999999999999988766542 12345666543
No 37
>PLN02643 ADP-glucose phosphorylase
Probab=98.78 E-value=2.2e-08 Score=105.19 Aligned_cols=96 Identities=17% Similarity=0.218 Sum_probs=73.7
Q ss_pred CCCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh----cCC
Q 008383 389 KECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN----QGK 464 (567)
Q Consensus 389 ~~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~----~g~ 464 (567)
..|.||..... +. ||+.++++.+++|..|..+||++|||++|+.++.+++++++.+|....+.+.+.+.. .++
T Consensus 198 g~Clfcdii~~-E~--iV~en~~f~Af~p~ap~~P~evlIiPKrH~~~~~dl~~~e~~~La~ilk~v~~~l~~~~~~~py 274 (336)
T PLN02643 198 GKCSLCEVVKK-DL--LIDESSHFVSIAPFAATFPFEIWIIPRDHSSNFHEIDDDKAVDLGGLLKLMLQKISKQLNDPPY 274 (336)
T ss_pred CCCcHHHHHhC-cc--EEEeCCCEEEEeccccCCCCEEEEEeccccCChhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 47999975432 22 899999999999999999999999999999999999999999999887766655432 245
Q ss_pred ceEEEEe-c---CCC--CCeeEEEEeecC
Q 008383 465 EAVFFEW-L---SKR--GTHANLQAVPIP 487 (567)
Q Consensus 465 ~~v~~E~-~---~~~--~~H~hi~~vPvp 487 (567)
++++... . .+. ..|+|+|++|+-
T Consensus 275 N~~~~~~P~~~~~~~~~~~H~hihi~PRl 303 (336)
T PLN02643 275 NYMIQTSPLGVEESNLPYTHWFLQIVPQL 303 (336)
T ss_pred eeeeecCCCccccCcccceEEEEEEecCc
Confidence 6555551 1 111 257777999964
No 38
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.75 E-value=2.2e-07 Score=91.58 Aligned_cols=162 Identities=17% Similarity=0.193 Sum_probs=91.9
Q ss_pred CCEEEEEcCCCCCHH----HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 3 PPRILLCGDVLGRLN----QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
.|||++++|+|.... .+-+.++.+++ . ..|+||++||++.........+.+++.. ...+.|+|++.||||...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~-~-~~d~vl~~GD~~~~~~~~~~~~~~~l~~-l~~~~~v~~v~GNHD~~~ 77 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINA-L-KPDLVVLTGDLVDGSVDVLELLLELLKK-LKAPLGVYAVLGNHDYYS 77 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhc-c-CCCEEEEcCcccCCcchhhHHHHHHHhc-cCCCCCEEEECCCccccc
Confidence 379999999998643 23223333333 2 3699999999987543322345555543 335689999999999642
Q ss_pred HH----HHHHhccccccCcccCCceecccEEEeCCCCeE-EEcCeEEEEEecccCCCCCCCCCCCHHHHH-HHHHhhcCC
Q 008383 79 KV----LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNF-TLHGLSVAYLSGRQSSEGQQFGTYSQDDVD-ALRALAEEP 152 (567)
Q Consensus 79 ~~----~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~-~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~-~L~~~~~~~ 152 (567)
.. .+.+. ..++.+|....+. +..|.+|.-+|-.... . ..++.. .+... ..
T Consensus 78 ~~~~~~~~~l~---------------~~~v~~L~~~~~~~~~~~~~i~i~G~~~~~-~------~~~~~~~~~~~~--~~ 133 (223)
T cd07385 78 GDEENWIEALE---------------SAGITVLRNESVEISVGGATIGIAGVDDGL-G------RRPDLEKALKGL--DE 133 (223)
T ss_pred CchHHHHHHHH---------------HcCCEEeecCcEEeccCCeEEEEEeccCcc-c------cCCCHHHHHhCC--CC
Confidence 21 11111 2466777654433 3567666665522110 0 011111 22221 23
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 008383 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY 216 (567)
Q Consensus 153 ~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py 216 (567)
..+.|+|+|. |..+.. +......|.++||.|..=-+.|+
T Consensus 134 ~~~~I~l~H~-P~~~~~------------------------~~~~~~dl~l~GHtHggqi~~~~ 172 (223)
T cd07385 134 DDPNILLAHQ-PDTAEE------------------------AAAWGVDLQLSGHTHGGQIRLPG 172 (223)
T ss_pred CCCEEEEecC-CChhHH------------------------hcccCccEEEeccCCCCEEeccc
Confidence 5689999998 332211 13447779999998866444443
No 39
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.75 E-value=4.9e-07 Score=92.23 Aligned_cols=198 Identities=14% Similarity=0.060 Sum_probs=105.3
Q ss_pred EEEEEcCCC--CC-----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-hHHHHHHHhcccCCCCccEEEE
Q 008383 5 RILLCGDVL--GR-----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-LLDEFMNYVEGRSEIPIPTYFI 70 (567)
Q Consensus 5 KILv~GDvh--G~-----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~~~~p~ptyfv 70 (567)
||++++|+| .+ .+.+-+.++.+++. ++|+||++||+...... ..+++..+..-...+++|+|++
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~--~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v 79 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRE--SLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHV 79 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcC--CCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEe
Confidence 799999999 21 23344445666544 38999999999754321 1123333322225577999999
Q ss_pred ccCCCChHHHHHHHhccccccCcccCCceecccEEEeCC-CCeEEEcCeEEEEEecccCCCC----C-------------
Q 008383 71 GDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEG----Q------------- 132 (567)
Q Consensus 71 ~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~----~------------- 132 (567)
+||||........... ... ..++. .-.++.+|.++.+|.+...... .
T Consensus 80 ~GNHD~~~~~~~~~~~--------------~~~-~~~~~~yysf~~~~~~~i~lds~~~~~~~~~~~~~~~~~~~~~~~~ 144 (267)
T cd07396 80 LGNHDLYNPSREYLLL--------------YTL-LGLGAPYYSFSPGGIRFIVLDGYDISALGRPEDTPKAENADDNSNL 144 (267)
T ss_pred cCccccccccHhhhhc--------------ccc-cCCCCceEEEecCCcEEEEEeCCccccccCCCCChhhhhHHHhchh
Confidence 9999854211111100 000 00110 0122346778888876421100 0
Q ss_pred -----------CCCCCCHHHHHHHHHhh-c--CCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-
Q 008383 133 -----------QFGTYSQDDVDALRALA-E--EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI- 197 (567)
Q Consensus 133 -----------~~~~~t~~dv~~L~~~~-~--~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l- 197 (567)
..+.+.++++..|+... . .....=|+++|.+|..... ... ........+.++++..
T Consensus 145 ~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~~~viV~~Hhp~~~~~~-~~~--------~~~~~~~~~~~ll~~~~ 215 (267)
T cd07396 145 GLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANGEKVIIFSHFPLHPEST-SPH--------GLLWNHEEVLSILRAYG 215 (267)
T ss_pred hhhccCccceeccCcCCHHHHHHHHHHHHHHHhcCCeEEEEEeccCCCCCC-Ccc--------ccccCHHHHHHHHHhCC
Confidence 01245677777666532 1 1122238999988754321 010 0122346677788774
Q ss_pred CCCEEEEccCCCccccccccCCCCcceeEEEEccCCCC
Q 008383 198 KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 198 kPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~ 235 (567)
+.+++|+||.|...... ...+.|+..+....
T Consensus 216 ~V~~v~~GH~H~~~~~~-------~~gi~~~~~~a~~~ 246 (267)
T cd07396 216 CVKACISGHDHEGGYAQ-------RHGIHFLTLEGMVE 246 (267)
T ss_pred CEEEEEcCCcCCCCccc-------cCCeeEEEechhhc
Confidence 67899999988764321 22455555555443
No 40
>PRK09453 phosphodiesterase; Provisional
Probab=98.74 E-value=1.7e-07 Score=89.97 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=46.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|||++++|+||++..+ +++.++.++. +.|.||++||++.... ....++.+.+ .+.+.++++|.||||.
T Consensus 1 mri~viSD~Hg~~~~~-~~~l~~~~~~-~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l---~~~~~~v~~V~GNhD~ 75 (182)
T PRK09453 1 MKLMFASDTHGSLPAT-EKALELFAQS-GADWLVHLGDVLYHGPRNPLPEGYAPKKVAELL---NAYADKIIAVRGNCDS 75 (182)
T ss_pred CeEEEEEeccCCHHHH-HHHHHHHHhc-CCCEEEEcccccccCcCCCCccccCHHHHHHHH---HhcCCceEEEccCCcc
Confidence 7999999999998754 3444433333 4799999999975321 0123445544 3455689999999984
No 41
>PHA03008 hypothetical protein; Provisional
Probab=98.74 E-value=2.7e-08 Score=93.65 Aligned_cols=93 Identities=15% Similarity=0.141 Sum_probs=61.7
Q ss_pred cccEEEeCCCCeEEE----cCeEEEEEecccCCC--CCC--------CCCCCHHHHHHHHHhhcCCCCccEEEeCCCCcc
Q 008383 101 TDNLFWLKGSGNFTL----HGLSVAYLSGRQSSE--GQQ--------FGTYSQDDVDALRALAEEPGIVDLFLTNEWPSG 166 (567)
Q Consensus 101 ~~Nl~~Lg~~gv~~~----~GlrIa~lgG~~~~~--~~~--------~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~g 166 (567)
..|++||..+++ ++ .|++|.|-.- .+. ++. .+.|..++-+.+.-+...+ .+||||||.||.|
T Consensus 98 ~gnIIYLeDs~V-tI~f~~rgIKIYGSP~--sP~~~F~~sai~k~~~~wAf~~~~d~~i~wwn~IP-~tDILITHgPP~G 173 (234)
T PHA03008 98 ELDIIILRDDLI-EFDFFDDIIKIYGQSH--IEDKKFKNSHIHKALEGIAHIKKNDDEINYRNHIP-KCDILITASPPFA 173 (234)
T ss_pred CCCEEEEeCCcE-EEEecCCceEEECCCC--CcchhcccccccccccccccccCccccchhhccCC-CCCEEEeCCCCcc
Confidence 358999998887 55 6888884322 222 111 1334322111221222234 4999999999999
Q ss_pred ccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008383 167 VTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (567)
Q Consensus 167 I~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (567)
+.|. .+|++.+.+-+.++|||||++||.-.|
T Consensus 174 hLD~-------------~vGC~~Ll~~I~rVKPKyHVFGh~~~~ 204 (234)
T PHA03008 174 ILDD-------------DLACGDLFSKVIKIKPKFHIFNGLTQF 204 (234)
T ss_pred cccc-------------ccCcHHHHHHHHHhCCcEEEeCCcccc
Confidence 9752 479999999999999999999995444
No 42
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=98.74 E-value=2.4e-08 Score=104.92 Aligned_cols=100 Identities=17% Similarity=0.193 Sum_probs=76.2
Q ss_pred CCCccccCC-CCC-CcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHh-c---
Q 008383 389 KECWFCLSS-PSV-ESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKN-Q--- 462 (567)
Q Consensus 389 ~~C~FC~~~-~~~-~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~-~--- 462 (567)
..|.||... ... ....||++++++.+++|-.|..|+|+||||++|+.++.+++++++.+|....+.+.+.+.+ .
T Consensus 184 g~clfcdii~~E~~~~~riV~end~~va~~p~~~~~P~e~lIiPKrH~~~~~dl~~~e~~~La~~l~~v~~~l~~~~~~~ 263 (329)
T cd00608 184 GRCLLCDYLKLELESKERIVVENEHFVAVVPFWARWPFEVHILPKRHVSRFTDLTDEEREDLAEILKRLLARYDNLFNCS 263 (329)
T ss_pred CCccHHHHHHhhhhcCCeEEEeCCCEEEEEecCCCCCcEEEEecCCCcCChhHCCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 579999743 222 2467999999999999999999999999999999999999999999999988777755543 2
Q ss_pred -CCceEEEEe-cCC-----CCCeeEEEEeecCc
Q 008383 463 -GKEAVFFEW-LSK-----RGTHANLQAVPIPT 488 (567)
Q Consensus 463 -g~~~v~~E~-~~~-----~~~H~hi~~vPvp~ 488 (567)
++.+++... .+. ...|+|+|++|+-.
T Consensus 264 ~pyn~~~h~~P~~~~~~~~~~~H~Hihi~Pr~~ 296 (329)
T cd00608 264 FPYSMGWHQAPTGGKELENWYYHWHFEIPPRRS 296 (329)
T ss_pred CCeEEEEeccCCCCCcCCcceEEEEEEeCCCcC
Confidence 344444331 111 24699999999743
No 43
>PF11969 DcpS_C: Scavenger mRNA decapping enzyme C-term binding; PDB: 1VLR_B 1XMM_D 1XML_B 1ST0_A 3BLA_B 3BL9_B 3BL7_B 1ST4_B 1XQU_B.
Probab=98.73 E-value=1.4e-08 Score=90.51 Aligned_cols=99 Identities=19% Similarity=0.269 Sum_probs=69.1
Q ss_pred CCccccCCCCCCcceEEEECCEEEEEecCCCCCCCeEEEEecc-ccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCC----
Q 008383 390 ECWFCLSSPSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVE-HVPNTISTSPECEKELGRFQNSLMMYYKNQGK---- 464 (567)
Q Consensus 390 ~C~FC~~~~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~-H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g~---- 464 (567)
+|.||......+...|++.++.+.++-+..|..+-|+||||.+ |+.|+.+|+.+-..-|.+++....+++++.+.
T Consensus 1 ~cif~~i~~~~~~~~vly~d~~~v~~~D~~P~a~~H~LviPk~~~i~sl~~L~~~~~~lL~~m~~~~~~~~~~~~~~~~~ 80 (116)
T PF11969_consen 1 NCIFCIIIRGEEPERVLYEDDDFVVFKDIYPKAPVHLLVIPKDPHIRSLRDLTPEHLPLLERMREVARELLKEEYPGDLD 80 (116)
T ss_dssp HHHHHHHTTSSSGGGESEEETSEEEEE-TT-SCCEEEEEEESSSS-SSGGG--GGGHHHHHHHHHHHHHHHHHHH-TT-E
T ss_pred CccceEeEcCCCCCcEEEEeCCEEEeeCCCCCcCcEEEEEeecCCCCChHHcCHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 4999987655455668899999999999999999999999999 99999999887777777776666666554321
Q ss_pred --c-eEEEEecCCCCCeeEEEEeecCcc
Q 008383 465 --E-AVFFEWLSKRGTHANLQAVPIPTS 489 (567)
Q Consensus 465 --~-~v~~E~~~~~~~H~hi~~vPvp~~ 489 (567)
. .+.|. ......|+|+|+|..+..
T Consensus 81 ~~~~~~gfH-~~PS~~HLHlHvi~~~~~ 107 (116)
T PF11969_consen 81 SDDIRLGFH-YPPSVYHLHLHVISPDFD 107 (116)
T ss_dssp GGGEEEEEE-SS-SSSS-EEEEEETTS-
T ss_pred hhhhccccc-CCCCcceEEEEEccCCCc
Confidence 1 23344 334568999999997764
No 44
>KOG3379 consensus Diadenosine polyphosphate hydrolase and related proteins of the histidine triad (HIT) family [Nucleotide transport and metabolism; General function prediction only]
Probab=98.73 E-value=8.9e-08 Score=85.19 Aligned_cols=89 Identities=13% Similarity=0.201 Sum_probs=69.7
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCc--eEEEE---ecC
Q 008383 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKE--AVFFE---WLS 473 (567)
Q Consensus 400 ~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~-g~~--~v~~E---~~~ 473 (567)
+...-|++...++|++....|+.|||+||+|++-++.+.+|+.++..+|..-.+.+.+++++. +.+ .|.+. -++
T Consensus 14 i~~~~VFykT~~sfafvNlkPvvpgHVLv~P~R~vpRl~dLt~~E~aDlF~t~~~v~~~lek~~~~ts~ti~iQDG~~AG 93 (150)
T KOG3379|consen 14 IPPDHVFYKTKHSFAFVNLKPVVPGHVLVSPLRVVPRLTDLTAAETADLFTTVQKVQRVLEKHYNATSLTIAIQDGPEAG 93 (150)
T ss_pred CCcceEEEeccceEEEEeccccccceEEEeccccccccccCCcHHHHHHHHHHHHHHHHHHHHhcccceEEEeccccccC
Confidence 343458899999999999999999999999999999999999988888887777777777753 222 22232 234
Q ss_pred CCCCeeEEEEeecCc
Q 008383 474 KRGTHANLQAVPIPT 488 (567)
Q Consensus 474 ~~~~H~hi~~vPvp~ 488 (567)
+-.+|+|+|++|+-.
T Consensus 94 QTVpHvHvHIlPR~~ 108 (150)
T KOG3379|consen 94 QTVPHVHVHILPRKA 108 (150)
T ss_pred cccceeEEEEccccc
Confidence 447899999999743
No 45
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.56 E-value=1.3e-06 Score=80.04 Aligned_cols=63 Identities=14% Similarity=0.053 Sum_probs=42.3
Q ss_pred EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEcc
Q 008383 157 LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 157 ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
|+++|.+|......... ...+...+.++++..+++++++||.|..+-.. +......|-+|+.|
T Consensus 81 iv~~Hhp~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~---~~~~~~~~~~~~aG 143 (144)
T cd07400 81 IVVLHHPLVPPPGSGRE---------RLLDAGDALKLLAEAGVDLVLHGHKHVPYVGN---ISNAGGGLVVIGAG 143 (144)
T ss_pred EEEecCCCCCCCccccc---------cCCCHHHHHHHHHHcCCCEEEECCCCCcCeee---ccCCCCCEEEEecC
Confidence 89999999877432111 12367889999999999999999988654321 11124456666655
No 46
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.53 E-value=2.5e-06 Score=81.22 Aligned_cols=140 Identities=16% Similarity=0.094 Sum_probs=88.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCC-CCccEEEEccCCCChHHHH
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSE-IPIPTYFIGDYGVGAAKVL 81 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~-~p~ptyfv~GN~~~~~~~~ 81 (567)
.|||||++|.|++... ..+..++.... ++|+||++||+..+.. +..+ .. +..++|+|-||+|.... .
T Consensus 1 ~m~ilviSDtH~~~~~-~~~~~~~~~~~-~~d~vih~GD~~~~~~-----~~~l----~~~~~~~i~~V~GN~D~~~~-~ 68 (172)
T COG0622 1 MMKILVISDTHGPLRA-IEKALKIFNLE-KVDAVIHAGDSTSPFT-----LDAL----EGGLAAKLIAVRGNCDGEVD-Q 68 (172)
T ss_pred CcEEEEEeccCCChhh-hhHHHHHhhhc-CCCEEEECCCcCCccc-----hHHh----hcccccceEEEEccCCCccc-c
Confidence 4899999999999873 34444444444 5899999999977532 2222 22 45789999999985310 0
Q ss_pred HHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeC
Q 008383 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTN 161 (567)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh 161 (567)
.-+....+++++|+||+.+=|-
T Consensus 69 -----------------------~~~p~~~~~~~~g~ki~l~HGh----------------------------------- 90 (172)
T COG0622 69 -----------------------EELPEELVLEVGGVKIFLTHGH----------------------------------- 90 (172)
T ss_pred -----------------------ccCChhHeEEECCEEEEEECCC-----------------------------------
Confidence 1112245677888888766553
Q ss_pred CCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcc
Q 008383 162 EWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKE 237 (567)
Q Consensus 162 ~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~ 237 (567)
=..+ ...-..+..+++....-..++||.|..... ....+.+||+|++-.+.
T Consensus 91 --~~~~----------------~~~~~~l~~la~~~~~Dvli~GHTH~p~~~-------~~~~i~~vNPGS~s~pr 141 (172)
T COG0622 91 --LYFV----------------KTDLSLLEYLAKELGADVLIFGHTHKPVAE-------KVGGILLVNPGSVSGPR 141 (172)
T ss_pred --cccc----------------ccCHHHHHHHHHhcCCCEEEECCCCcccEE-------EECCEEEEcCCCcCCCC
Confidence 2211 011234556666666777888998754221 23459999999986543
No 47
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.53 E-value=1.7e-06 Score=83.02 Aligned_cols=134 Identities=15% Similarity=0.162 Sum_probs=81.3
Q ss_pred EEEEEcCCC-CCHH-HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHH
Q 008383 5 RILLCGDVL-GRLN-QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (567)
Q Consensus 5 KILv~GDvh-G~~~-~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~ 82 (567)
.|+|++|+| |.-. .+-+.+.++.+. +.+|.+|++||+... +..+++ ..+..|+++|.||||...
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~-~~~d~iih~GDi~~~------~~~~~l---~~~~~~~~~V~GN~D~~~---- 66 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVP-GKIQHVLCTGNLCSK------ETYDYL---KTIAPDVHIVRGDFDENL---- 66 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhcc-CCCCEEEECCCCCCH------HHHHHH---HhhCCceEEEECCCCccc----
Confidence 489999999 5422 222234444333 358999999999762 233333 222347899999997320
Q ss_pred HHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCC
Q 008383 83 AASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNE 162 (567)
Q Consensus 83 ~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~ 162 (567)
. |...-+++++|++ |+++|-
T Consensus 67 ~-----------------------lp~~~~~~~~g~~-------------------------------------i~l~HG 86 (178)
T cd07394 67 N-----------------------YPETKVITVGQFK-------------------------------------IGLIHG 86 (178)
T ss_pred c-----------------------CCCcEEEEECCEE-------------------------------------EEEEEC
Confidence 0 1111233445544 456666
Q ss_pred CCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCC
Q 008383 163 WPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 163 wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~ 235 (567)
++.+.. .....+..+++...+.+.++||.|..+.+ ....+++||+|+++.
T Consensus 87 ~~~~~~----------------~~~~~~~~~~~~~~~dvii~GHTH~p~~~-------~~~g~~viNPGSv~~ 136 (178)
T cd07394 87 HQVVPW----------------GDPDSLAALQRQLDVDILISGHTHKFEAF-------EHEGKFFINPGSATG 136 (178)
T ss_pred CcCCCC----------------CCHHHHHHHHHhcCCCEEEECCCCcceEE-------EECCEEEEECCCCCC
Confidence 553221 12345667777788899999998864332 123599999999974
No 48
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.50 E-value=1.2e-06 Score=90.05 Aligned_cols=215 Identities=16% Similarity=0.122 Sum_probs=113.6
Q ss_pred CCEEEEEcCCCC---CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCC-h---hhHHHHHHHhcccCCCCccEEEEccCCC
Q 008383 3 PPRILLCGDVLG---RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDS-S---ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (567)
Q Consensus 3 ~~KILv~GDvhG---~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~-~---~~~~~~~~~l~g~~~~p~ptyfv~GN~~ 75 (567)
..|++|+||.+. .-..++++ +.+...++|+||++||+.-.. . ..-+.+.+.++. ....+|+|+++||||
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~---l~~~~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~-~~~~~P~~~~~GNHD 79 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDH---LEKELGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEP-LASYVPYMVTPGNHE 79 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHH---HHhccCCccEEEEcCchhhhcCCccchhHHHHHHHHHH-HHhcCCcEEcCcccc
Confidence 468999999995 33444444 433233689999999996321 1 112233333321 123589999999998
Q ss_pred ChHHHHHHHhccccc-cCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCC-
Q 008383 76 GAAKVLLAASKNSAN-QGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEP- 152 (567)
Q Consensus 76 ~~~~~~~~l~~~~~~-~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~-~~~~~- 152 (567)
............... ............+.+| .+++++++|.+|....... ......++++.|++ |+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y-----sf~~g~v~fi~Lds~~~~~---~~~~~~~q~~WL~~~L~~~~~ 151 (294)
T cd00839 80 ADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWY-----SFDVGPVHFVSLSTEVDFY---GDGPGSPQYDWLEADLAKVDR 151 (294)
T ss_pred cccCCCCcccccccccccccCCCCCCCCCceE-----EEeeCCEEEEEEecccccc---cCCCCcHHHHHHHHHHHHhcc
Confidence 542110000000000 0000000000112221 2346788999886543211 11334555665554 22211
Q ss_pred --CCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCC---------CC
Q 008383 153 --GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNV---------DA 221 (567)
Q Consensus 153 --~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~---------~~ 221 (567)
.+.-|+++|.++.......... . ........+.+|+++.+....|+||.|.|--..|..+. ..
T Consensus 152 ~~~~~~iv~~H~P~~~~~~~~~~~----~--~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~~~~~ 225 (294)
T cd00839 152 SKTPWIIVMGHRPMYCSNTDHDDC----I--EGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCNPYSN 225 (294)
T ss_pred cCCCeEEEEeccCcEecCcccccc----c--hhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccccccC
Confidence 2456899999987543211100 0 01234567888899999999999999865445564331 12
Q ss_pred cceeEEEEccCCCC
Q 008383 222 VHVTRFLGLAPVGN 235 (567)
Q Consensus 222 ~~~TRFI~L~~~g~ 235 (567)
...|.+|-.|.-|.
T Consensus 226 ~~g~~yiv~G~~G~ 239 (294)
T cd00839 226 PKGPVHIVIGAGGN 239 (294)
T ss_pred CCccEEEEECCCcc
Confidence 34678887777776
No 49
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.48 E-value=3.6e-06 Score=84.55 Aligned_cols=201 Identities=15% Similarity=0.113 Sum_probs=102.0
Q ss_pred CEEEEEcCCCCCH------HHHHHHHHHHHhhcCCCcEEEEecCCCCC----C--hhhHHHHHHHhcccCCCCccEEEEc
Q 008383 4 PRILLCGDVLGRL------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD----S--SELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 4 ~KILv~GDvhG~~------~~l~~kv~~l~~k~GpfD~vi~~GDff~~----~--~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
|||++++|+|... +.+.+.+. ......|+|+++||+|.. + .....++.+.+....+.++|+|++.
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~---~~~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~g~~v~~v~ 77 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLR---GEARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDSGVPCYFMH 77 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHH---hhhccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 7899999999542 12333332 222247999999999852 1 1112334444444355668999999
Q ss_pred cCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC
Q 008383 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE 151 (567)
Q Consensus 72 GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~ 151 (567)
||||... ...+.. ..++..|....+++++|.+|...-|-...... ..-..++++..
T Consensus 78 GNHD~~~--~~~~~~--------------~~g~~~l~~~~~~~~~g~~i~l~HGd~~~~~d-------~~y~~~r~~~r- 133 (241)
T PRK05340 78 GNRDFLL--GKRFAK--------------AAGMTLLPDPSVIDLYGQRVLLLHGDTLCTDD-------KAYQRFRRKVR- 133 (241)
T ss_pred CCCchhh--hHHHHH--------------hCCCEEeCCcEEEEECCEEEEEECCcccccCC-------HHHHHHHHHHh-
Confidence 9998421 111110 12345555555667899999888776431111 11111222111
Q ss_pred CCCccEEEeCCCCcccc----cc----ccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcc
Q 008383 152 PGIVDLFLTNEWPSGVT----NK----AAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVH 223 (567)
Q Consensus 152 ~~~vDILLTh~wP~gI~----~~----~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~ 223 (567)
.+.=+.+-+..|.... .. +..........-.......+.++++...+++.++||.|.--. ..+.. ...
T Consensus 134 -~~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~-~~~~~--~~~ 209 (241)
T PRK05340 134 -NPWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAI-HQLQA--GGQ 209 (241)
T ss_pred -CHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCcce-eeccC--CCc
Confidence 1111111122332210 00 000000000001234456788999999999999999774211 11111 111
Q ss_pred eeEEEEccCCCC
Q 008383 224 VTRFLGLAPVGN 235 (567)
Q Consensus 224 ~TRFI~L~~~g~ 235 (567)
.-+.++||.+..
T Consensus 210 ~~~~~~lgdw~~ 221 (241)
T PRK05340 210 PATRIVLGDWHE 221 (241)
T ss_pred ceEEEEeCCCCC
Confidence 236899999964
No 50
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=98.48 E-value=7.9e-06 Score=82.86 Aligned_cols=185 Identities=10% Similarity=-0.026 Sum_probs=99.4
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh------HHHHHHHhccc
Q 008383 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL------LDEFMNYVEGR 60 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~------~~~~~~~l~g~ 60 (567)
+.++++++|+|-... .+-..++.+++.....|+||++||++...... ...+.+.+..
T Consensus 4 ~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~- 82 (262)
T cd07395 4 PFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSL- 82 (262)
T ss_pred CEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhh-
Confidence 568999999998742 11122333433333579999999997653221 1233344322
Q ss_pred CCCCccEEEEccCCCCh----HHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCC
Q 008383 61 SEIPIPTYFIGDYGVGA----AKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGT 136 (567)
Q Consensus 61 ~~~p~ptyfv~GN~~~~----~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~ 136 (567)
...++|+|+++||||.. ...+..+.. ...+. + -.++.+|+++..|.............
T Consensus 83 ~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~------------~~g~~-~-----y~~~~~~~~~i~lds~~~~~~~~~~~ 144 (262)
T cd07395 83 LDPDIPLVCVCGNHDVGNTPTEESIKDYRD------------VFGDD-Y-----FSFWVGGVFFIVLNSQLFFDPSEVPE 144 (262)
T ss_pred ccCCCcEEEeCCCCCCCCCCChhHHHHHHH------------HhCCc-c-----eEEEECCEEEEEeccccccCcccccc
Confidence 22378999999999852 111111110 00011 0 12346788888775432211111123
Q ss_pred CCHHHHHHHHHh-hcC---CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCc
Q 008383 137 YSQDDVDALRAL-AEE---PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVF 210 (567)
Q Consensus 137 ~t~~dv~~L~~~-~~~---~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~f 210 (567)
...++++.|++. ... ....-|+++|.||...........+. ........+.+++++......||||.|..
T Consensus 145 ~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~----~~~~~~~~l~~ll~~~~V~~v~~GH~H~~ 218 (262)
T cd07395 145 LAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFN----IPKSVRKPLLDKFKKAGVKAVFSGHYHRN 218 (262)
T ss_pred chHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCC----cCHHHHHHHHHHHHhcCceEEEECccccC
Confidence 456667766653 211 23467999999996432110000000 00112346777888889999999998854
No 51
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.48 E-value=6.3e-07 Score=87.92 Aligned_cols=175 Identities=16% Similarity=0.151 Sum_probs=89.4
Q ss_pred EEEEEcCCCCC-H----------H---HHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCccE
Q 008383 5 RILLCGDVLGR-L----------N---QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPT 67 (567)
Q Consensus 5 KILv~GDvhG~-~----------~---~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~pt 67 (567)
||+.++|+|=. . . ..++++.....+. ..|+||++||+|.... .....+.+++.......+|+
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 79 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEE-KVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPV 79 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhc-CCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCE
Confidence 69999999932 1 1 1233332222233 4799999999987532 22334444443222247899
Q ss_pred EEEccCCCChHHHHHHHhccccccCcccCCceecccEEEeC---C-CCeE--E--EcCeEEEEEecccCCCCCCCCCCCH
Q 008383 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLK---G-SGNF--T--LHGLSVAYLSGRQSSEGQQFGTYSQ 139 (567)
Q Consensus 68 yfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg---~-~gv~--~--~~GlrIa~lgG~~~~~~~~~~~~t~ 139 (567)
|++.||||....... .. ......++..++ . .... . ..++.|.+++-.... ...
T Consensus 80 ~~~~GNHD~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~~-------~~~ 140 (223)
T cd00840 80 FIIAGNHDSPSRLGA-LS-----------PLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRRS-------RLR 140 (223)
T ss_pred EEecCCCCCcccccc-cc-----------chHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCHH-------HHH
Confidence 999999996532111 00 001123444432 1 1111 1 235666655432110 001
Q ss_pred HHHHHHHH--hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcc
Q 008383 140 DDVDALRA--LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFY 211 (567)
Q Consensus 140 ~dv~~L~~--~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fy 211 (567)
+..+.+.. ........-||++|....+...... ...+.....+...+..|+++||.|...
T Consensus 141 ~~~~~~~~~~~~~~~~~~~Il~~H~~~~~~~~~~~------------~~~~~~~~~~~~~~~d~v~~GH~H~~~ 202 (223)
T cd00840 141 DLLADAELRPRPLDPDDFNILLLHGGVAGAGPSDS------------ERAPFVPEALLPAGFDYVALGHIHRPQ 202 (223)
T ss_pred HHHHHHHHHhhccCCCCcEEEEEeeeeecCCCCcc------------cccccCcHhhcCcCCCEEECCCcccCe
Confidence 11110111 1123456789999999887642110 112333344556788999999987653
No 52
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=98.37 E-value=8.5e-06 Score=83.16 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=110.9
Q ss_pred CEEEEEcCCCCCH----HHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhcccCCCCccEEEEcc
Q 008383 4 PRILLCGDVLGRL----NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVEGRSEIPIPTYFIGD 72 (567)
Q Consensus 4 ~KILv~GDvhG~~----~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~g~~~~p~ptyfv~G 72 (567)
++++++||.-..- ..+.+.+.++.++. +.|+||.+||++-.+. ...+.+.+.+.. ....+|+|.++|
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~-~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~-~~~~~P~~~v~G 78 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAEL-GPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSA-PSLQVPWYLVLG 78 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhc-CCCEEEeCCCccccCCCCCCcchHHHHHHHHHccc-hhhcCCeEEecC
Confidence 4789999988741 34444555555543 5799999999863211 111234444432 225789999999
Q ss_pred CCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEc------CeEEEEEecccCC-CC--------CCCCCC
Q 008383 73 YGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLH------GLSVAYLSGRQSS-EG--------QQFGTY 137 (567)
Q Consensus 73 N~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~------GlrIa~lgG~~~~-~~--------~~~~~~ 137 (567)
|||........+.-... .....+..++.+| .+... +++|.+|--.... .. ......
T Consensus 79 NHD~~~~~~~~~~~~~~----~~~~~~~~~~~~y-----~~~~~~~~~~~~~~~i~LDt~~~~~~~~~~~~~~~~~~~~~ 149 (277)
T cd07378 79 NHDYSGNVSAQIDYTKR----PNSPRWTMPAYYY-----RVSFPFPSSDTTVEFIMIDTVPLCGNSDDIASPYGPPNGKL 149 (277)
T ss_pred CcccCCCchheeehhcc----CCCCCccCcchhe-----EEEeecCCCCCEEEEEEEeChhHcCccccccccccCcchhh
Confidence 99864221111000000 0001111222111 11222 5788777544221 11 011233
Q ss_pred CHHHHHHHHHh-hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccc
Q 008383 138 SQDDVDALRAL-AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPY 216 (567)
Q Consensus 138 t~~dv~~L~~~-~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py 216 (567)
.+++++.|.+. .......=|+++|.+|........ ...-...+.+++++.+..++|+||.|.+....
T Consensus 150 ~~~Q~~wL~~~L~~~~~~~~iv~~H~P~~~~~~~~~----------~~~~~~~l~~l~~~~~v~~vl~GH~H~~~~~~-- 217 (277)
T cd07378 150 AEEQLAWLEKTLAASTADWKIVVGHHPIYSSGEHGP----------TSCLVDRLLPLLKKYKVDAYLSGHDHNLQHIK-- 217 (277)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCccceeCCCCCC----------cHHHHHHHHHHHHHcCCCEEEeCCcccceeee--
Confidence 45666666653 222334569999999875432111 01124567788888899999999988754321
Q ss_pred cCCCCcceeEEEEccCCCC
Q 008383 217 SNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 217 ~~~~~~~~TRFI~L~~~g~ 235 (567)
. ....|++|..|.-+.
T Consensus 218 -~--~~~~~~~i~~G~~~~ 233 (277)
T cd07378 218 -D--DGSGTSFVVSGAGSK 233 (277)
T ss_pred -c--CCCCcEEEEeCCCcc
Confidence 1 124688888875543
No 53
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.35 E-value=1e-05 Score=80.83 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=63.1
Q ss_pred EEEEcCCCCCH------HHHHHHHHHHHhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccCCCCccEEEEccC
Q 008383 6 ILLCGDVLGRL------NQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRSEIPIPTYFIGDY 73 (567)
Q Consensus 6 ILv~GDvhG~~------~~l~~kv~~l~~k~GpfD~vi~~GDff~~------~~~~~~~~~~~l~g~~~~p~ptyfv~GN 73 (567)
+++++|+|... +.+++.+..+. ...|+||++||+|.. .....+++.+.+....+.+.|+|+|.||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~---~~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~~~~v~~v~GN 77 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEA---RKADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQGVPCYFMHGN 77 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhh---ccCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 37899999542 23444444332 257999999999852 1111223344444335557899999999
Q ss_pred CCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEeccc
Q 008383 74 GVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (567)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (567)
||.... ..+.. ..++.+|....+++++|.+|..+-|-.
T Consensus 78 HD~~~~--~~~~~--------------~~gi~~l~~~~~~~~~g~~ill~HGd~ 115 (231)
T TIGR01854 78 RDFLIG--KRFAR--------------EAGMTLLPDPSVIDLYGQKVLLMHGDT 115 (231)
T ss_pred Cchhhh--HHHHH--------------HCCCEEECCCEEEEECCEEEEEEcCcc
Confidence 984211 11110 135667766666778999998887763
No 54
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.34 E-value=1.4e-05 Score=81.78 Aligned_cols=71 Identities=17% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCEEEEEcCCCCC----HHHHHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 3 PPRILLCGDVLGR----LNQLFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 3 ~~KILv~GDvhG~----~~~l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
.+||++++|+|.. ...+-+.++.+++. +.|+|+++||++.. .....+++.+.+..... +.|+|+|.||||-
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~--~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~-~~pv~~V~GNHD~ 124 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQ--KPDLILLGGDYVLFDMPLNFSAFSDVLSPLAE-CAPTFACFGNHDR 124 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhc--CCCEEEEccCcCCCCccccHHHHHHHHHHHhh-cCCEEEecCCCCc
Confidence 4899999999976 33333333344332 57999999999762 11122334444433232 4799999999985
No 55
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=98.25 E-value=5.7e-05 Score=76.74 Aligned_cols=162 Identities=12% Similarity=0.041 Sum_probs=87.5
Q ss_pred CCcEEEEecCCCCCChh-hHHH----HHHHhcccCCC--CccEEEEccCCCChH------HHHHHHhccccccCcccCCc
Q 008383 32 PFDAVLCVGQFFPDSSE-LLDE----FMNYVEGRSEI--PIPTYFIGDYGVGAA------KVLLAASKNSANQGFKMDGF 98 (567)
Q Consensus 32 pfD~vi~~GDff~~~~~-~~~~----~~~~l~g~~~~--p~ptyfv~GN~~~~~------~~~~~l~~~~~~~~~~~~~~ 98 (567)
+.|+||++||++..+.. ..++ +..+..-.... .+|+|.|+||||..- ..+..+..
T Consensus 45 ~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig~~~~~~~~~~~rf~~------------ 112 (257)
T cd08163 45 KPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIGFGNGVVLPVRQRFEK------------ 112 (257)
T ss_pred CCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccCCCCCCCHHHHHHHHH------------
Confidence 47999999999875432 1122 33333222233 378999999998421 11111110
Q ss_pred eecccEEEeCC-CCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHh-hc-CCCCccEEEeCCCCcccccccc---
Q 008383 99 KVTDNLFWLKG-SGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AE-EPGIVDLFLTNEWPSGVTNKAA--- 172 (567)
Q Consensus 99 ~i~~Nl~~Lg~-~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~-~~-~~~~vDILLTh~wP~gI~~~~~--- 172 (567)
++|. ..++.++|.+|.+|-+....... ...+.....+.|... .. .....=|||||.|..-..+...
T Consensus 113 -------~Fg~~~~~~~~~~~~fV~Lds~~l~~~~-~~~~~~~~~~~l~~~l~~~~~~~p~ILl~H~Plyr~~~~~cg~~ 184 (257)
T cd08163 113 -------YFGPTSRVIDVGNHTFVILDTISLSNKD-DPDVYQPPREFLHSFSAMKVKSKPRILLTHVPLYRPPNTSCGPL 184 (257)
T ss_pred -------HhCCCceEEEECCEEEEEEccccccCCc-ccccchhHHHHHHhhhhccCCCCcEEEEeccccccCCCCCCCCc
Confidence 1121 13446778888887776322111 122333333334332 21 1234559999999765533111
Q ss_pred -ccc--ccc--ccCC-CCCCcHHHHHHHHHhCCCEEEEccCCCcccc
Q 008383 173 -ASD--MLV--GISD-SSNTDSTVSELVAEIKPRYHIAGSKGVFYAR 213 (567)
Q Consensus 173 -~~~--~~~--~~~~-~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr 213 (567)
... .+. +..- ..+..+.-.+|++++||+..|+||.|.|.+-
T Consensus 185 re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~ 231 (257)
T cd08163 185 RESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEV 231 (257)
T ss_pred cccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCcccee
Confidence 000 111 1111 1345567779999999999999998887773
No 56
>PHA02239 putative protein phosphatase
Probab=98.19 E-value=4e-06 Score=84.01 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~ 83 (567)
|||+++||+||+++.|.+.++.+....++.|.||++||+..-.+...+.+..++. ....+.+++++.||||. .+++-
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~-~~~~~~~~~~l~GNHE~--~~l~~ 77 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFD-LMSNDDNVVTLLGNHDD--EFYNI 77 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHH-HhhcCCCeEEEECCcHH--HHHHH
Confidence 6899999999999988877887765444679999999997654332333333322 12335679999999983 45554
Q ss_pred H
Q 008383 84 A 84 (567)
Q Consensus 84 l 84 (567)
+
T Consensus 78 ~ 78 (235)
T PHA02239 78 M 78 (235)
T ss_pred H
Confidence 4
No 57
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.16 E-value=1e-05 Score=87.01 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=47.8
Q ss_pred CCEEEEEcCCCCCH-----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh-------hHHHHHHHhcc-----
Q 008383 3 PPRILLCGDVLGRL-----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE-------LLDEFMNYVEG----- 59 (567)
Q Consensus 3 ~~KILv~GDvhG~~-----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~-------~~~~~~~~l~g----- 59 (567)
.||||+++|+|-.. ...|+++-.+..+. ..|+||++||+|..... ..+.|.+|.-|
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~-~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~ 81 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQ-DVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCE 81 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccc
Confidence 58999999999421 22344444444333 48999999999985321 12233332111
Q ss_pred ------------------------cCCCCccEEEEccCCCChH
Q 008383 60 ------------------------RSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 60 ------------------------~~~~p~ptyfv~GN~~~~~ 78 (567)
...+.+|+|.|.||||++.
T Consensus 82 ~~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 82 LEFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1136899999999999875
No 58
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.15 E-value=3.6e-05 Score=81.41 Aligned_cols=139 Identities=13% Similarity=0.122 Sum_probs=76.2
Q ss_pred CEEEEEcCCC-CC----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh----hhHHHHHH-HhcccCCCCccE
Q 008383 4 PRILLCGDVL-GR----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS----ELLDEFMN-YVEGRSEIPIPT 67 (567)
Q Consensus 4 ~KILv~GDvh-G~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~----~~~~~~~~-~l~g~~~~p~pt 67 (567)
||||.++|+| |. +...++++-.+..+. ..|+||++||+|.... .....+.+ ++.-..+.++|+
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~-~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v 79 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAH-GITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITL 79 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHc-CCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 7999999999 31 334555554444444 4799999999997521 11112222 222224568999
Q ss_pred EEEccCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHH
Q 008383 68 YFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA 147 (567)
Q Consensus 68 yfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~ 147 (567)
|+++||||.... ........ ..--...+|+++.+....++++|++|..+. +...++...+..
T Consensus 80 ~~I~GNHD~~~~--~~~~~~~~-----~~ll~~~~~v~v~~~~~~v~i~g~~i~~lP-----------~~~~~~~~~~~~ 141 (340)
T PHA02546 80 HVLVGNHDMYYK--NTIRPNAP-----TELLGQYDNITVIDEPTTVDFDGCSIDLIP-----------WICKENTEEILE 141 (340)
T ss_pred EEEccCCCcccc--cccccCch-----HHHHhhCCCEEEeCCceEEEECCEEEEECC-----------CCCHHHHHHHHH
Confidence 999999984210 00000000 000012367777766555567787766432 223444444333
Q ss_pred hhcCCCCccEEEeCC
Q 008383 148 LAEEPGIVDLFLTNE 162 (567)
Q Consensus 148 ~~~~~~~vDILLTh~ 162 (567)
... .....|||.|.
T Consensus 142 ~l~-~~~~~ill~H~ 155 (340)
T PHA02546 142 FIK-NSKSEYCVGHW 155 (340)
T ss_pred Hhc-cCCCcEEEEee
Confidence 221 24568999994
No 59
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.10 E-value=3.3e-05 Score=75.11 Aligned_cols=72 Identities=14% Similarity=0.018 Sum_probs=47.3
Q ss_pred CCEEEEEcCCCCCHH-----------HHHHHHHHHHhhcCCCcEEEEecCCCCCChh---hHHHHHHHhcccCCCCccEE
Q 008383 3 PPRILLCGDVLGRLN-----------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE---LLDEFMNYVEGRSEIPIPTY 68 (567)
Q Consensus 3 ~~KILv~GDvhG~~~-----------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~---~~~~~~~~l~g~~~~p~pty 68 (567)
.+|||+++|+|-... ...+.++++.++. ++|+||++||++..... ....+..++.-.....+|+|
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~ 80 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAE-KPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWA 80 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhc-CCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEE
Confidence 579999999996322 2344454444333 57999999999664222 23344444433344579999
Q ss_pred EEccCCC
Q 008383 69 FIGDYGV 75 (567)
Q Consensus 69 fv~GN~~ 75 (567)
+++||||
T Consensus 81 ~~~GNHD 87 (199)
T cd07383 81 ATFGNHD 87 (199)
T ss_pred EECccCC
Confidence 9999996
No 60
>PLN02533 probable purple acid phosphatase
Probab=98.10 E-value=9.9e-05 Score=80.40 Aligned_cols=208 Identities=14% Similarity=0.128 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh--hHHHHHHHhcccCCCCccEEEEccCCCChHH-
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK- 79 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~--~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~- 79 (567)
..|++++||.+-. ...-+.++.+++. .+|+||++||+.-.+.. .-+.+.++++. ....+|.+.++||||....
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~~--~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~-l~s~~P~m~~~GNHE~~~~~ 214 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSKW--DYDVFILPGDLSYANFYQPLWDTFGRLVQP-LASQRPWMVTHGNHELEKIP 214 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHhc--CCCEEEEcCccccccchHHHHHHHHHHhhh-HhhcCceEEeCccccccccc
Confidence 4689999998532 1111233444432 58999999999654321 11234444332 2235899999999995310
Q ss_pred -----HHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhc---
Q 008383 80 -----VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAE--- 150 (567)
Q Consensus 80 -----~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~-~~~--- 150 (567)
.+..+.. .+. .+........|.+| .+..+|+.|..|+..... ....++.+-|++ |++
T Consensus 215 ~~~~~~f~~y~~-rf~--mP~~~~g~~~~~yY-----Sfd~g~vhfI~Lds~~~~------~~~~~Q~~WLe~dL~~~~r 280 (427)
T PLN02533 215 ILHPEKFTAYNA-RWR--MPFEESGSTSNLYY-----SFNVYGVHIIMLGSYTDF------EPGSEQYQWLENNLKKIDR 280 (427)
T ss_pred cccCcCccchhh-ccc--CCccccCCCCCceE-----EEEECCEEEEEEeCCccc------cCchHHHHHHHHHHHhhcc
Confidence 0000000 000 00000000123332 135678888888653211 112344444543 221
Q ss_pred CCCCccEEEeCCCCccccccccccccccccCCCCCC-cHHHHHHHHHhCCCEEEEccCCCcccc-ccccCC-CCcceeEE
Q 008383 151 EPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNT-DSTVSELVAEIKPRYHIAGSKGVFYAR-EPYSNV-DAVHVTRF 227 (567)
Q Consensus 151 ~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~G-s~~i~~l~~~lkPRYhf~Gh~~~fyEr-~Py~~~-~~~~~TRF 227 (567)
...+.-|++.|.||......... . ....+ -..+..|+.+.++.+.|+||.|. ||| .|..+. .....|..
T Consensus 281 ~~~pwiIv~~H~P~y~s~~~~~~----~---~~~~~~r~~le~Ll~~~~VdlvlsGH~H~-YeR~~p~~~~~~~~~gpvy 352 (427)
T PLN02533 281 KTTPWVVAVVHAPWYNSNEAHQG----E---KESVGMKESMETLLYKARVDLVFAGHVHA-YERFDRVYQGKTDKCGPVY 352 (427)
T ss_pred cCCCEEEEEeCCCeeecccccCC----c---chhHHHHHHHHHHHHHhCCcEEEecceec-ccccccccCCccCCCCCEE
Confidence 12356789999999865321000 0 00111 24678899999999999999985 565 343222 12346788
Q ss_pred EEccCCCCc
Q 008383 228 LGLAPVGNK 236 (567)
Q Consensus 228 I~L~~~g~~ 236 (567)
|-.|.-|+.
T Consensus 353 iv~G~gG~~ 361 (427)
T PLN02533 353 ITIGDGGNR 361 (427)
T ss_pred EEeCCCccc
Confidence 888887774
No 61
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.09 E-value=3.6e-05 Score=76.02 Aligned_cols=150 Identities=11% Similarity=0.054 Sum_probs=82.8
Q ss_pred EEEEEcCCCCC-------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCccEEEEccCCC
Q 008383 5 RILLCGDVLGR-------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (567)
Q Consensus 5 KILv~GDvhG~-------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~ptyfv~GN~~ 75 (567)
+|++++|+|-- ++...+++.+...+. +.|+||++||+..... .....+.+.+....+.++|+++++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~-~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEAL-NIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHc-CCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCCc
Confidence 79999999952 222333333332222 5799999999976533 2223333444322335799999999997
Q ss_pred ChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHh-hcCCCC
Q 008383 76 GAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRAL-AEEPGI 154 (567)
Q Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~-~~~~~~ 154 (567)
.- + +|. +. ...++++.|.+. +.....
T Consensus 81 ~~------~---------------------~ld-~~-------------------------~~~~ql~WL~~~L~~~~~~ 107 (214)
T cd07399 81 LV------L---------------------ALE-FG-------------------------PRDEVLQWANEVLKKHPDR 107 (214)
T ss_pred ch------h---------------------hCC-CC-------------------------CCHHHHHHHHHHHHHCCCC
Confidence 20 0 011 00 013445555542 222222
Q ss_pred ccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEccCCCcc
Q 008383 155 VDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAGSKGVFY 211 (567)
Q Consensus 155 vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~Gh~~~fy 211 (567)
-=|+++|.+|..-....+. ..-. .....+...+.+|+++. +.+..|+||.|...
T Consensus 108 ~~iv~~H~p~~~~~~~~~~--~~~~-~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~ 162 (214)
T cd07399 108 PAILTTHAYLNCDDSRPDS--IDYD-SDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAG 162 (214)
T ss_pred CEEEEecccccCCCCcCcc--cccc-cccccHHHHHHHHHhCCCCEEEEEccccCCCc
Confidence 3489999998733211110 0000 00124556788888877 68889999987653
No 62
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=98.09 E-value=6.6e-06 Score=84.28 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=50.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|+|+|+||+||+++.|.+.++++.-.. ..|.++++||+..-++... ++.+++ .+.+.++++|.||||.
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~-~~D~li~lGDlVdrGp~s~-~vl~~l---~~l~~~~~~VlGNHD~ 68 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDP-AKDTLWLVGDLVNRGPDSL-EVLRFV---KSLGDSAVTVLGNHDL 68 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCC-CCCEEEEeCCccCCCcCHH-HHHHHH---HhcCCCeEEEecChhH
Confidence 579999999999998887777664222 3699999999987544433 444554 2345578999999984
No 63
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.08 E-value=0.00017 Score=73.16 Aligned_cols=186 Identities=12% Similarity=0.058 Sum_probs=100.2
Q ss_pred EEEEcCCCCCHH---HH--H-H-HHHHHHhhcCCCcEEEEecCCCCCCh-------hhHHHHHHHhc---ccCCC-CccE
Q 008383 6 ILLCGDVLGRLN---QL--F-K-RVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLDEFMNYVE---GRSEI-PIPT 67 (567)
Q Consensus 6 ILv~GDvhG~~~---~l--~-~-kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~~~~~~l~---g~~~~-p~pt 67 (567)
|+.++|+|-... .. . + .++.+++- +.|+||++||+..... ....++.+|+. ..... +.|+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~--~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 79 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVI--KPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKW 79 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhh--CCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceE
Confidence 678899996321 11 1 1 12333332 4799999999864311 11222323332 22222 5899
Q ss_pred EEEccCCCChHH-----HHHHHhccccccCcccCCceecccEEEeCCCCeEE--EcCeEEEEEecccCCCCC----CCCC
Q 008383 68 YFIGDYGVGAAK-----VLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFT--LHGLSVAYLSGRQSSEGQ----QFGT 136 (567)
Q Consensus 68 yfv~GN~~~~~~-----~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~--~~GlrIa~lgG~~~~~~~----~~~~ 136 (567)
|.++||||.... ....... ..+....+.-. -.++ .+++.|.+|......... ..+.
T Consensus 80 ~~v~GNHD~~~~~~~~~~~~~~~~--------y~~~~~~~~~~-----~~~~~~~~~~~~I~Ldt~~~~~~~~~~~~~g~ 146 (256)
T cd07401 80 FDIRGNHDLFNIPSLDSENNYYRK--------YSATGRDGSFS-----FSHTTRFGNYSFIGVDPTLFPGPKRPFNFFGS 146 (256)
T ss_pred EEeCCCCCcCCCCCccchhhHHHH--------hheecCCCccc-----eEEEecCCCEEEEEEcCccCCCCCCCCceecc
Confidence 999999985210 0000000 00000001000 1111 368899888876432111 1245
Q ss_pred CCHHHHHHHHH-hhcC-CCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCcccc-
Q 008383 137 YSQDDVDALRA-LAEE-PGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAR- 213 (567)
Q Consensus 137 ~t~~dv~~L~~-~~~~-~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr- 213 (567)
+++++++.|++ +... ..+.-|+++|.|+....... ...+.. +.+++++.++.+.||||.|.. ++
T Consensus 147 l~~~ql~wL~~~L~~~~~~~~~IV~~HhP~~~~~~~~-----------~~~~~~-~~~ll~~~~v~~vl~GH~H~~-~~~ 213 (256)
T cd07401 147 LDKKLLDRLEKELEKSTNSNYTIWFGHYPTSTIISPS-----------AKSSSK-FKDLLKKYNVTAYLCGHLHPL-GGL 213 (256)
T ss_pred CCHHHHHHHHHHHHhcccCCeEEEEEcccchhccCCC-----------cchhHH-HHHHHHhcCCcEEEeCCccCC-Ccc
Confidence 67888888765 3222 23567999999985432110 112233 888899999999999998864 44
Q ss_pred ccccCC
Q 008383 214 EPYSNV 219 (567)
Q Consensus 214 ~Py~~~ 219 (567)
.|.-+.
T Consensus 214 ~p~h~~ 219 (256)
T cd07401 214 EPVHYA 219 (256)
T ss_pred eeeeec
Confidence 776554
No 64
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.06 E-value=5.5e-05 Score=84.05 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=67.2
Q ss_pred CCEEEEEcCCC-CCH---HHHHHHH-HHHHhh-------cCCCcEEEEecCCCCCC-----h----------hhHHHHHH
Q 008383 3 PPRILLCGDVL-GRL---NQLFKRV-QSVNKS-------AGPFDAVLCVGQFFPDS-----S----------ELLDEFMN 55 (567)
Q Consensus 3 ~~KILv~GDvh-G~~---~~l~~kv-~~l~~k-------~GpfD~vi~~GDff~~~-----~----------~~~~~~~~ 55 (567)
.++|++++|+| |.- ...+.++ +-++.. ....|.+|++||++... . .....+.+
T Consensus 243 ~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~~ 322 (504)
T PRK04036 243 KVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAAE 322 (504)
T ss_pred ccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHHH
Confidence 47899999999 542 1222222 222311 22479999999998631 0 01124555
Q ss_pred HhcccCCCCccEEEEccCCCChHHHHHHHhccccccCcccC-Cceec-ccEEEeCCCCeEEEcCeEEEEEeccc
Q 008383 56 YVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVT-DNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (567)
Q Consensus 56 ~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~~~~~~-~~~i~-~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (567)
++... ...+|+++++||||..... ++.... ... ...+. .|+.+|..-..++++|.+|.+..|..
T Consensus 323 ~L~~L-~~~i~V~~ipGNHD~~~~~---lPQ~~l----~~~l~~~l~~~~v~~lsNP~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 323 YLKQI-PEDIKIIISPGNHDAVRQA---EPQPAF----PEEIRSLFPEHNVTFVSNPALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHhh-hcCCeEEEecCCCcchhhc---cCCCCc----cHHHHHhcCcCCeEEecCCeEEEECCEEEEEECCCC
Confidence 55432 2358999999999843210 110000 000 00012 58888887666688999999999974
No 65
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=97.99 E-value=1.9e-05 Score=79.41 Aligned_cols=108 Identities=15% Similarity=0.231 Sum_probs=62.2
Q ss_pred EEEcCCC--CCH--HHHHHHHHH-HHhhc---CCCcEEEEecCCCCCCh---------------hhHHHHHHHhcccCCC
Q 008383 7 LLCGDVL--GRL--NQLFKRVQS-VNKSA---GPFDAVLCVGQFFPDSS---------------ELLDEFMNYVEGRSEI 63 (567)
Q Consensus 7 Lv~GDvh--G~~--~~l~~kv~~-l~~k~---GpfD~vi~~GDff~~~~---------------~~~~~~~~~l~g~~~~ 63 (567)
++++|+| +.. ...+..+.+ ++... -..|+||++||++.... +....+.+++.... .
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~ 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVP-S 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhcc-c
Confidence 6889999 321 122222222 22211 14799999999986410 11223555554322 3
Q ss_pred CccEEEEccCCCChHHHH------HHHhccccccCcccCCcee-cccEEEeCCCCeEEEcCeEEEEEeccc
Q 008383 64 PIPTYFIGDYGVGAAKVL------LAASKNSANQGFKMDGFKV-TDNLFWLKGSGNFTLHGLSVAYLSGRQ 127 (567)
Q Consensus 64 p~ptyfv~GN~~~~~~~~------~~l~~~~~~~~~~~~~~~i-~~Nl~~Lg~~gv~~~~GlrIa~lgG~~ 127 (567)
.+|+|+++||||.....+ ..+. . .+ ..|+.++.....++++|.+|.+..|..
T Consensus 81 ~~~v~~ipGNHD~~~~~~pq~~l~~~l~-----------~-~~~~~~v~~l~Np~~~~~~g~~i~~~~G~~ 139 (243)
T cd07386 81 HIKIIIIPGNHDAVRQAEPQPALPEEIR-----------K-LFLPGNVEFVSNPALVKIHGVDVLIYHGRS 139 (243)
T ss_pred CCeEEEeCCCCCcccccCCCCCccHHHH-----------h-hcCCCceEEeCCCCEEEECCEEEEEECCCC
Confidence 589999999998532110 1110 0 01 357888876666688999999888864
No 66
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.98 E-value=0.00057 Score=70.05 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=109.8
Q ss_pred CEEEEEcCCCCCH----------------HHHHHHHHHHHhhcCCCcEEEE-ecCCCCCChh--hH-----HHHHHHhcc
Q 008383 4 PRILLCGDVLGRL----------------NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSE--LL-----DEFMNYVEG 59 (567)
Q Consensus 4 ~KILv~GDvhG~~----------------~~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~--~~-----~~~~~~l~g 59 (567)
.+||.++|+||.+ ..+...++++.+++ .|+|++ +||++..... .. ..-...+..
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ 78 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAA 78 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHH
Confidence 4799999999987 33445555555443 377776 9999864321 00 000111111
Q ss_pred cCCCCccEEEEccCCCChH--HHH-HHHhccccccCcccCCceecccEEEeC-------CCCeEEEc-CeEEEEEecccC
Q 008383 60 RSEIPIPTYFIGDYGVGAA--KVL-LAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGRQS 128 (567)
Q Consensus 60 ~~~~p~ptyfv~GN~~~~~--~~~-~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG~~~ 128 (567)
...+.. .+++.||||... +.+ +.+.. .+...++.|+.+.. ..-|++++ |+|||.+|-...
T Consensus 79 ln~~g~-d~~~lGNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~kVgviG~~~~ 149 (277)
T cd07410 79 MNALGY-DAGTLGNHEFNYGLDYLDKVIKQ--------ANFPVLSANVIDADTGEPFLKPYVILERDVGVKVGIIGLTTP 149 (277)
T ss_pred HHhcCC-CEEeecccCcccCHHHHHHHHHh--------CCCCEEEEEEEeCCCCCcccCCEEEEEecCCCEEEEEecCCc
Confidence 234444 477789999652 222 22221 22346788888764 22355689 999999986633
Q ss_pred CCCC-----C--CCCCCH--HHHHH-HHHhhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHH
Q 008383 129 SEGQ-----Q--FGTYSQ--DDVDA-LRALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAE 196 (567)
Q Consensus 129 ~~~~-----~--~~~~t~--~dv~~-L~~~~~~~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~ 196 (567)
.... . ...|+. +.+++ +..+.. .++| |+|+|.--..-.. + .........+|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~--~~~D~IIvl~H~g~~~~~~-------~-----~~~~~~~~~~la~~ 215 (277)
T cd07410 150 QIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA--EGADVVVVLAHGGFERDLE-------E-----SLTGENAAYELAEE 215 (277)
T ss_pred ccccccCcccCCCcEEcCHHHHHHHHHHHHHH--cCCCEEEEEecCCcCCCcc-------c-----ccCCccHHHHHHhc
Confidence 2110 0 012221 11222 112211 3455 5677753221100 0 01223344566665
Q ss_pred -hCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcccceeEEEeccC
Q 008383 197 -IKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (567)
Q Consensus 197 -lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~ 248 (567)
-..-..|+||.|..+..+ ....|.++.-|..|. ++--++|+
T Consensus 216 ~~~vD~IlgGHsH~~~~~~------~~~~~~v~q~g~~g~-----~vg~l~l~ 257 (277)
T cd07410 216 VPGIDAILTGHQHRRFPGP------TVNGVPVVQPGNWGS-----HLGVIDLT 257 (277)
T ss_pred CCCCcEEEeCCCccccccC------CcCCEEEEcCChhhC-----EEEEEEEE
Confidence 345678899988765421 234578887777665 66665554
No 67
>KOG4359 consensus Protein kinase C inhibitor-like protein [General function prediction only]
Probab=97.92 E-value=2.2e-05 Score=70.16 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=63.8
Q ss_pred CCCCccccCCCC--CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCc
Q 008383 388 SKECWFCLSSPS--VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKE 465 (567)
Q Consensus 388 ~~~C~FC~~~~~--~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g~~ 465 (567)
.+.|.||-.... -.+.+..-+.+++.++-++.|-..-|-|+||++|+.+..+|..+...=+++.++.=+..|.....
T Consensus 30 ~~~C~FCDia~r~~~~~ell~~En~~~V~fkDikPaA~~HYLvipK~Hi~~~~~L~k~~V~Lve~m~~~G~~~l~r~~~- 108 (166)
T KOG4359|consen 30 KSTCVFCDIAGRQDPGTELLHCENEDLVCFKDIKPAATHHYLVVPKKHIGNCRTLRKDQVELVENMVTVGKTILERNNF- 108 (166)
T ss_pred CCceEEEEeecccCCCCceeEecCCcEEEEecCCccccceEEEechHHcCChhhcchhhHHHHHHHHHHHHHHHHHhcc-
Confidence 458999986542 23344444555555556789999999999999999999998766544444343333333333221
Q ss_pred eEEEE-ecCCC------CCeeEEEEeecCcchh
Q 008383 466 AVFFE-WLSKR------GTHANLQAVPIPTSKA 491 (567)
Q Consensus 466 ~v~~E-~~~~~------~~H~hi~~vPvp~~~~ 491 (567)
+++=| +++.. ..|+|+|+|--+.+++
T Consensus 109 td~~~~r~GFHLPPf~SV~HLHlH~I~P~~DMg 141 (166)
T KOG4359|consen 109 TDFTNVRMGFHLPPFCSVSHLHLHVIAPVDDMG 141 (166)
T ss_pred CCchheeEeccCCCcceeeeeeEeeecchHHhc
Confidence 22222 22222 4799999996555654
No 68
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=97.85 E-value=3.5e-05 Score=75.55 Aligned_cols=66 Identities=18% Similarity=0.174 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
.||+++||+||++..|.+.++.+..+ ...|.+|++||+..-.... .+..+++. . .++++|.||||.
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~-~~~d~~~~~GD~v~~g~~~-~~~~~~l~---~--~~~~~v~GNhe~ 66 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFD-PARDRLISVGDLIDRGPES-LACLELLL---E--PWFHAVRGNHEQ 66 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCC-CCCCEEEEeCCcccCCCCH-HHHHHHHh---c--CCEEEeECCChH
Confidence 37999999999999887766665432 2479999999997643332 24444542 2 358999999984
No 69
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.83 E-value=4.8e-05 Score=77.11 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=47.8
Q ss_pred CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCC-ccEE
Q 008383 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIP-IPTY 68 (567)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p-~pty 68 (567)
||||.++|+|- . ....++++-.+..+. ..|+||++||+|.... .+...+.+++....... +|+|
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~-~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~ 79 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAE-QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIV 79 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHc-CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEE
Confidence 79999999993 2 122344444333333 4899999999987532 22223445554434444 9999
Q ss_pred EEccCCCChH
Q 008383 69 FIGDYGVGAA 78 (567)
Q Consensus 69 fv~GN~~~~~ 78 (567)
+|.||||...
T Consensus 80 ~i~GNHD~~~ 89 (253)
T TIGR00619 80 VISGNHDSAQ 89 (253)
T ss_pred EEccCCCChh
Confidence 9999999754
No 70
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=97.82 E-value=3.2e-05 Score=77.41 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhh-------cC-CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKS-------AG-PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGV 75 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k-------~G-pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~ 75 (567)
|||.|+||+||++.+|-+.++++.-. .+ +.|.+|++||+..-+.. ..+..+++.... .+-.+++|-||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~-s~evl~~l~~l~-~~~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPD-SPEVLRLVMSMV-AAGAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCC-HHHHHHHHHHHh-hCCcEEEEECCcH
Confidence 68999999999999998888877321 11 36999999999875443 234444542211 1235889999998
Q ss_pred ChHHHHHH
Q 008383 76 GAAKVLLA 83 (567)
Q Consensus 76 ~~~~~~~~ 83 (567)
. .++..
T Consensus 79 ~--~l~~~ 84 (234)
T cd07423 79 N--KLYRK 84 (234)
T ss_pred H--HHHHH
Confidence 3 34443
No 71
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.68 E-value=0.0039 Score=62.67 Aligned_cols=201 Identities=12% Similarity=0.055 Sum_probs=105.9
Q ss_pred CEEEEEcCCCCCH---------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCccEEEE
Q 008383 4 PRILLCGDVLGRL---------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFI 70 (567)
Q Consensus 4 ~KILv~GDvhG~~---------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv 70 (567)
++|+.++|+||.+ ..+...++++++.+ |=.+++..||++...... ...+.+.+ ..++ ..+++
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~-~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l---~~~g-~d~~~ 75 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAEN-ENTLLLDAGDNFDGSPPSTATKGEANIELM---NALG-YDAVT 75 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcC-CCeEEEeCCccCCCccchhccCCcHHHHHH---HhcC-CCEEe
Confidence 4899999999776 45555566665543 434889999997643210 01122222 3333 46788
Q ss_pred ccCCCChH---HHHHHHhccccccCcccCCceecccEEEeC---------CCCeEEEcCeEEEEEecccCCCCC-----C
Q 008383 71 GDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSSEGQ-----Q 133 (567)
Q Consensus 71 ~GN~~~~~---~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~~~~-----~ 133 (567)
.|||+... .+.+.+.. .+...++.|+.+-+ ..-+++++|+||+.+|-....... .
T Consensus 76 ~GNHe~d~g~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~~~~~~~~~~~~~~ 147 (252)
T cd00845 76 IGNHEFDYGLDALAELYKD--------ANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGLTTPDTPTYTPLGW 147 (252)
T ss_pred eccccccccHHHHHHHHHh--------CCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEeccccceeecCCCc
Confidence 89999642 12222321 12345677876543 123667899999999876432211 0
Q ss_pred CCCCC-HHHHHHHHH-hhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHH-hCCCEEEEccCC
Q 008383 134 FGTYS-QDDVDALRA-LAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAE-IKPRYHIAGSKG 208 (567)
Q Consensus 134 ~~~~t-~~dv~~L~~-~~~~~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~-lkPRYhf~Gh~~ 208 (567)
...+. +...+++.+ ......++| |+|+| ||..- ..++++. -..-..++||.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~D~vIvl~H-~g~~~----------------------~~~la~~~~giDlvlggH~H 204 (252)
T cd00845 148 IIGLPFEDLAEAVAVAEELLAEGADVIILLSH-LGLDD----------------------DEELAEEVPGIDVILGGHTH 204 (252)
T ss_pred ccCceecCHHHHHHHHHHHHhCCCCEEEEEec-cCccc----------------------hHHHHhcCCCccEEEcCCcC
Confidence 01111 111222221 011124555 45666 54432 1122222 245678899987
Q ss_pred CccccccccCCCCcceeEEEEccCCCCcccceeEEEeccCCC
Q 008383 209 VFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 250 (567)
Q Consensus 209 ~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~p~ 250 (567)
..+... .....|..+--|..+ +++-.+.|+..
T Consensus 205 ~~~~~~-----~~~~~~~v~~~g~~~-----~~~~~~~l~~~ 236 (252)
T cd00845 205 HLLEEP-----EVVNGTLIVQAGKYG-----KYVGEIDLELD 236 (252)
T ss_pred cccCCC-----cccCCEEEEeCChhH-----ceEEEEEEEEE
Confidence 643211 123357777655544 47777777654
No 72
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.65 E-value=0.00013 Score=78.84 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=47.7
Q ss_pred CEEEEEcCCCC-C----------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh---hhHHHHHHHhcccCCCCccEEE
Q 008383 4 PRILLCGDVLG-R----------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS---ELLDEFMNYVEGRSEIPIPTYF 69 (567)
Q Consensus 4 ~KILv~GDvhG-~----------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~---~~~~~~~~~l~g~~~~p~ptyf 69 (567)
||||.++|+|- . ...+++++..+-.+. ..|+||++||+|.... .....+.+++......++|+|+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~-~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEH-QVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhc-CCCEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 79999999993 2 112233333332233 4899999999986421 1112234444444556789999
Q ss_pred EccCCCChHH
Q 008383 70 IGDYGVGAAK 79 (567)
Q Consensus 70 v~GN~~~~~~ 79 (567)
|.||||....
T Consensus 80 I~GNHD~~~~ 89 (407)
T PRK10966 80 LAGNHDSVAT 89 (407)
T ss_pred EcCCCCChhh
Confidence 9999997654
No 73
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.64 E-value=8.7e-05 Score=73.50 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=52.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~ 83 (567)
.||+|+||+||++++|.+.++++..+. ..|.++++||+..-++. ..+..+++. + ...++|.||||. .+++.
T Consensus 17 ~ri~vigDIHG~~~~L~~lL~~i~~~~-~~D~li~lGDlvDrGp~-s~~vl~~l~---~--~~~~~v~GNHE~--~~l~~ 87 (218)
T PRK11439 17 RHIWLVGDIHGCFEQLMRKLRHCRFDP-WRDLLISVGDLIDRGPQ-SLRCLQLLE---E--HWVRAVRGNHEQ--MALDA 87 (218)
T ss_pred CeEEEEEcccCCHHHHHHHHHhcCCCc-ccCEEEEcCcccCCCcC-HHHHHHHHH---c--CCceEeeCchHH--HHHHH
Confidence 489999999999999998888875432 36999999999865443 234555653 2 236789999983 34554
Q ss_pred H
Q 008383 84 A 84 (567)
Q Consensus 84 l 84 (567)
+
T Consensus 88 ~ 88 (218)
T PRK11439 88 L 88 (218)
T ss_pred H
Confidence 4
No 74
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.59 E-value=0.00016 Score=77.74 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=49.5
Q ss_pred CEEEEEcCCCCC---------HHHHHH----HHHHHHhhcCCCcEEEEecCCCCCC---hhhHHHHHHHhcccCCCCccE
Q 008383 4 PRILLCGDVLGR---------LNQLFK----RVQSVNKSAGPFDAVLCVGQFFPDS---SELLDEFMNYVEGRSEIPIPT 67 (567)
Q Consensus 4 ~KILv~GDvhG~---------~~~l~~----kv~~l~~k~GpfD~vi~~GDff~~~---~~~~~~~~~~l~g~~~~p~pt 67 (567)
||||.++|+|=. ++..++ .++.+. +. ..|+||++||+|... ..+...+.+.+.......+|+
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~-~~-~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv 78 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAK-EE-KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPV 78 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHH-Hc-cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcE
Confidence 799999999954 222222 233222 23 479999999999853 233444555554446678999
Q ss_pred EEEccCCCChH
Q 008383 68 YFIGDYGVGAA 78 (567)
Q Consensus 68 yfv~GN~~~~~ 78 (567)
|.|.||||.+.
T Consensus 79 ~~I~GNHD~~~ 89 (390)
T COG0420 79 VVIAGNHDSPS 89 (390)
T ss_pred EEecCCCCchh
Confidence 99999999764
No 75
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=97.58 E-value=0.00012 Score=74.71 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=49.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|.+.|+||+||++++|.+.++++.-.. .-|.++++||+..-++... +..+++ ...+-.+++|-||||.
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~-~~D~l~~lGDlVdRGP~sl-evL~~l---~~l~~~~~~VlGNHD~ 68 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDP-GQDTLWLTGDLVARGPGSL-EVLRYV---KSLGDAVRLVLGNHDL 68 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCC-CCCEEEEeCCccCCCCCHH-HHHHHH---HhcCCCeEEEEChhHH
Confidence 459999999999999988888775322 3599999999977554433 344454 2333346799999984
No 76
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=97.57 E-value=0.00021 Score=73.34 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=48.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc----CCCcEEEEecCCCCCChhhHHHHHHHhcc-cCCCCc-cEEEEccCCCCh
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSA----GPFDAVLCVGQFFPDSSELLDEFMNYVEG-RSEIPI-PTYFIGDYGVGA 77 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~----GpfD~vi~~GDff~~~~~~~~~~~~~l~g-~~~~p~-ptyfv~GN~~~~ 77 (567)
+|+++||+||+++.|-+.++.+.... ...+.+|++||+..-.++. .++.+++.. ...-+. .++|+.||||..
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS-~eVld~L~~l~~~~~~~~vv~LrGNHE~~ 80 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPET-RKVIDFLISLPEKHPKQRHVFLCGNHDFA 80 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCH-HHHHHHHHHhhhcccccceEEEecCChHH
Confidence 69999999999998887777776442 1367899999997644332 233444322 222222 578999999843
No 77
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=97.56 E-value=0.00014 Score=73.83 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=48.3
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
++|+||+||+++.|-+.++++.... ..|.++++||+..-++... +..+++. +..-.+++|.||||..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~-~~D~Li~lGDlVdRGp~s~-evl~~l~---~l~~~v~~VlGNHD~~ 67 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDP-AKDRLWLVGDLVNRGPDSL-ETLRFVK---SLGDSAKTVLGNHDLH 67 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCC-CCCEEEEecCcCCCCcCHH-HHHHHHH---hcCCCeEEEcCCchHH
Confidence 4799999999998887777765332 3699999999977554433 3444542 3334688999999853
No 78
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=97.52 E-value=0.00015 Score=73.15 Aligned_cols=77 Identities=12% Similarity=0.111 Sum_probs=51.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhc-------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSA-------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~-------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
||+.|+||+||.++.|.+.+++++-.. ..-|.+|++||+..-++... ++.+|+.... .+-.++++-||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~-~vl~~~~~~~-~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSL-RMIEIVWELV-EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChH-HHHHHHHHHh-hCCCEEEEeCccHH
Confidence 689999999999999888887764321 12379999999986544322 3334432211 22368999999973
Q ss_pred hHHHHHHH
Q 008383 77 AAKVLLAA 84 (567)
Q Consensus 77 ~~~~~~~l 84 (567)
.++..+
T Consensus 79 --~~l~~~ 84 (245)
T PRK13625 79 --KLYRFF 84 (245)
T ss_pred --HHHHHH
Confidence 345543
No 79
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=97.52 E-value=0.00017 Score=71.41 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=49.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHH
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAA 84 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l 84 (567)
||+|+||+||+++.|.+.++.+.-+. ..|.+||+||+..-++... +..+++. + -.+++|.||||. .++..+
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~-~~d~l~~lGD~vdrG~~~~-~~l~~l~---~--~~~~~v~GNHE~--~~~~~~ 86 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCP-ETDLLISVGDNIDRGPESL-NVLRLLN---Q--PWFISVKGNHEA--MALDAF 86 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCC-CCCEEEECCCCcCCCcCHH-HHHHHHh---h--CCcEEEECchHH--HHHHHH
Confidence 89999999999998887777664222 4799999999977443322 3445542 1 246899999983 344433
No 80
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.51 E-value=0.016 Score=59.89 Aligned_cols=220 Identities=16% Similarity=0.137 Sum_probs=113.6
Q ss_pred CEEEEEcCCCCCHH--------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChh--hH---HHHHHHhcccCCCC
Q 008383 4 PRILLCGDVLGRLN--------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE--LL---DEFMNYVEGRSEIP 64 (567)
Q Consensus 4 ~KILv~GDvhG~~~--------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~--~~---~~~~~~l~g~~~~p 64 (567)
++||.++|+||++. .+...++++.+++ +-.++|-+||+|..... .. ....+.+ ..++
T Consensus 1 i~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~-~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~---n~~g 76 (288)
T cd07412 1 VQILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQN-PNSLFVSAGDLIGASPFESALLQDEPTIEAL---NAMG 76 (288)
T ss_pred CeEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcC-CCeEEEeCCcccccccchhhcccCCcHHHHH---HhhC
Confidence 47999999999754 3444455554443 44699999998754211 00 0111222 3444
Q ss_pred ccEEEEccCCCCh---HHHHHHHhccccc-------cCcc-cCCceecccEEEeC-------CCCeEEEcCeEEEEEecc
Q 008383 65 IPTYFIGDYGVGA---AKVLLAASKNSAN-------QGFK-MDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 65 ~ptyfv~GN~~~~---~~~~~~l~~~~~~-------~~~~-~~~~~i~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~ 126 (567)
+- +++.||||.. ..+.+.+...... +.|. ..-..++.|+++-. ..-+++.+|+|||.+|=.
T Consensus 77 ~D-a~t~GNHefd~G~~~l~~~~~~~~~~~~~~~~~~~~~~a~fp~l~aNv~~~~~~~~~~~py~i~~~~G~kIgviGl~ 155 (288)
T cd07412 77 VD-ASAVGNHEFDEGYAELLRRINGGCHPTTGCQAGYPFPGANFPYLAANVYDKGTGTPALPPYTIKDVGGVKVGFIGAV 155 (288)
T ss_pred Ce-eeeecccccccCHHHHHHHHhccCCccccccccccCcCCCCCEEEEeEEecCCCCcccCCEEEEEECCEEEEEEeec
Confidence 44 4777999954 2333333210000 0000 11246788887643 234456899999999875
Q ss_pred cCCCCC-------CCCCCCHHHHHHHHH----hhcCCCCccE--EEeCCCCccccccccccccccccCCCCCCcHHHHHH
Q 008383 127 QSSEGQ-------QFGTYSQDDVDALRA----LAEEPGIVDL--FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (567)
Q Consensus 127 ~~~~~~-------~~~~~t~~dv~~L~~----~~~~~~~vDI--LLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (567)
.+.... ....|+ +.++++++ +.. .++|+ +|+|.--..-. . +.. .........++
T Consensus 156 ~~~~~~~~~~~~~~g~~f~-d~~e~~~~~v~~lr~--~~~D~IIvL~H~G~~~~~---~----~~~---~~~~~~~~~~l 222 (288)
T cd07412 156 TKDTPNLVSPDGVAGLEFT-DEVEAINAVAPELKA--GGVDAIVVLAHEGGSTKG---G----DDT---CSAASGPIADI 222 (288)
T ss_pred CCCccceeccccccCceEc-CHHHHHHHHHHHHHH--CCCCEEEEEeCCCCCCCC---C----Ccc---ccccChhHHHH
Confidence 321110 011232 12233322 221 35665 66884322110 0 000 00111234566
Q ss_pred HHHhC--CCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcccceeEEEeccCCC
Q 008383 194 VAEIK--PRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 250 (567)
Q Consensus 194 ~~~lk--PRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~p~ 250 (567)
+.++. .-..+.||.|..+.. |.. ....|.++.-|..|+ ++--..|.-.
T Consensus 223 ~~~~~~~iD~IlgGHsH~~~~~-~~~---~~~~~~v~q~g~~g~-----~vg~i~l~~~ 272 (288)
T cd07412 223 VNRLDPDVDVVFAGHTHQAYNC-TVP---AGNPRLVTQAGSYGK-----AVADVDLTID 272 (288)
T ss_pred HhhcCCCCCEEEeCccCccccc-ccc---CcCCEEEEecChhhc-----eeEEEEEEEE
Confidence 66654 478999999877653 211 234688888888775 6766666543
No 81
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=97.42 E-value=0.0003 Score=69.88 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=47.0
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhc------CCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 7 LLCGDVLGRLNQLFKRVQSVNKSA------GPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~------GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
.|+||+||+++.|.+.++++.... .+.|.+|++||+..-++. ..++.+++..... +-.++++-||||.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~-S~~vl~~l~~l~~-~~~~~~l~GNHE~ 75 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPE-IRELLEIVKSMVD-AGHALAVMGNHEF 75 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCC-HHHHHHHHHHhhc-CCCEEEEEccCcH
Confidence 589999999999988888875431 146999999999764433 2234444432221 2368999999984
No 82
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.40 E-value=0.00032 Score=69.02 Aligned_cols=69 Identities=13% Similarity=0.186 Sum_probs=46.8
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhh------cCCCcEEEEecCCCCCChhhHHHHHHHhc----ccCCCCccEEEEccCCCC
Q 008383 7 LLCGDVLGRLNQLFKRVQSVNKS------AGPFDAVLCVGQFFPDSSELLDEFMNYVE----GRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k------~GpfD~vi~~GDff~~~~~~~~~~~~~l~----g~~~~p~ptyfv~GN~~~ 76 (567)
+|+||+||+++.|.+.++++.-- ..+.|.++++||++.-.+... ++.+++. ...+.+.+++++.||||.
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~-~vl~~l~~l~~~~~~~~~~v~~l~GNHE~ 79 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVI-EILWLLYKLEQEAAKAGGKVHFLLGNHEL 79 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHH-HHHHHHHHHHHHHHhcCCeEEEeeCCCcH
Confidence 48999999999888777655310 125799999999987544322 2223221 122356789999999984
No 83
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=97.38 E-value=0.00032 Score=69.20 Aligned_cols=67 Identities=15% Similarity=0.360 Sum_probs=45.9
Q ss_pred EEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 7 LLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 7 Lv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
.|+||+||+++.|.+.++.+... +-|.+|++||++.-..... ++..++......+.+++++-||||.
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~--~~d~li~lGD~vdrg~~~~-~~l~~l~~~~~~~~~~~~l~GNHe~ 67 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFP--PNDKLIFLGDYVDRGPDSV-EVIDLLLALKILPDNVILLRGNHED 67 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCC--CCCEEEEECCEeCCCCCcH-HHHHHHHHhcCCCCcEEEEccCchh
Confidence 48999999999887666665542 4699999999986543322 2333332112226789999999984
No 84
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.33 E-value=0.002 Score=62.61 Aligned_cols=99 Identities=12% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCcEEEEecCCCCCChh-hHHHHHHHhcccC-----CCCccEEEEccCCCChHHHHHHHhccccccCcccCCceecccEE
Q 008383 32 PFDAVLCVGQFFPDSSE-LLDEFMNYVEGRS-----EIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLF 105 (567)
Q Consensus 32 pfD~vi~~GDff~~~~~-~~~~~~~~l~g~~-----~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~ 105 (567)
+.|+||++||++..+.. ..+++.+++.... .-.+|+|+|+||||- ++
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDI-------------------G~-------- 94 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDI-------------------GG-------- 94 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCc-------------------CC--------
Confidence 57999999999876432 1223444433222 235889999999972 11
Q ss_pred EeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCC
Q 008383 106 WLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSN 185 (567)
Q Consensus 106 ~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~ 185 (567)
.+ ...+++.++..++. . |+|||.++...
T Consensus 95 ----~~-----------------------~~~~~~~v~RF~~~---F----i~lsH~P~~~~------------------ 122 (195)
T cd08166 95 ----EE-----------------------EDPIESKIRRFEKY---F----IMLSHVPLLAE------------------ 122 (195)
T ss_pred ----CC-----------------------CCcCHHHHHHHHHh---h----eeeeccccccc------------------
Confidence 00 00123434444432 2 99999987632
Q ss_pred CcHHHHHHHHHhCCCEEEEccCCC
Q 008383 186 TDSTVSELVAEIKPRYHIAGSKGV 209 (567)
Q Consensus 186 Gs~~i~~l~~~lkPRYhf~Gh~~~ 209 (567)
+.+++.+++.+++|...|+||.|.
T Consensus 123 ~~~~~~~~~~~~~p~~Ifs~H~H~ 146 (195)
T cd08166 123 GGQALKHVVTDLDPDLIFSAHRHK 146 (195)
T ss_pred ccHHHHHHHHhcCceEEEEcCccc
Confidence 334889999999999999999764
No 85
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=97.31 E-value=0.0064 Score=61.74 Aligned_cols=179 Identities=14% Similarity=0.118 Sum_probs=90.4
Q ss_pred CEEEEEcCCCCC--H---HHHHH-HHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 4 PRILLCGDVLGR--L---NQLFK-RVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 4 ~KILv~GDvhG~--~---~~l~~-kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
|||+.++|+|-. . ..++. .++.++ ..++|+||+.||+-.... ..-..+.+++. ....+.|+++++||||.
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~--~~~~D~~v~tGDl~~~~~~~~~~~~~~~l~-~~~~~~~~~~vpGNHD~ 77 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIE--QLKPDLLVVTGDLTNDGEPEEYRRLKELLA-RLELPAPVIVVPGNHDA 77 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHh--cCCCCEEEEccCcCCCCCHHHHHHHHHHHh-hccCCCceEeeCCCCcC
Confidence 689999999976 1 22222 223333 235699999999966532 22234445553 23788999999999996
Q ss_pred hHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc-CC-C-
Q 008383 77 AAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE-EP-G- 153 (567)
Q Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~-~~-~- 153 (567)
............. ..+-.+... ....+.++.++-=.... ...+.+..+..+.|..... .. .
T Consensus 78 ~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~~~~~~~~d~~~~~--~~~G~~~~~q~~~l~~~l~~~~~~~ 141 (301)
T COG1409 78 RVVNGEAFSDQFF-----------NRYAVLVGA---CSSGGWRVIGLDSSVPG--VPLGRLGAEQLDWLEEALAAAPERA 141 (301)
T ss_pred CchHHHHhhhhhc-----------ccCcceEee---ccCCceEEEEecCCCCC--CCCCEECHHHHHHHHHHHHhCcccc
Confidence 5443332221000 011111100 00023344433211110 1123345666665554321 11 1
Q ss_pred --CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhC--CCEEEEccCCCc
Q 008383 154 --IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK--PRYHIAGSKGVF 210 (567)
Q Consensus 154 --~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk--PRYhf~Gh~~~f 210 (567)
.+ |+++|.++......... ...........++.... =++.++||.|.-
T Consensus 142 ~~~~-v~~~hh~~~~~~~~~~~--------~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 142 KDTV-VVLHHHPLPSPGTGVDR--------VALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred CceE-EEecCCCCCCCCCccce--------eeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 23 56666555533222111 12344556666677666 789999997643
No 86
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=97.31 E-value=0.023 Score=57.85 Aligned_cols=200 Identities=13% Similarity=0.073 Sum_probs=102.8
Q ss_pred CEEEEEcCCCCCHHH----------------------HHHHHHHHHhhcCCCcEEE-EecCCCCCChhh----HHHHHHH
Q 008383 4 PRILLCGDVLGRLNQ----------------------LFKRVQSVNKSAGPFDAVL-CVGQFFPDSSEL----LDEFMNY 56 (567)
Q Consensus 4 ~KILv~GDvhG~~~~----------------------l~~kv~~l~~k~GpfD~vi-~~GDff~~~~~~----~~~~~~~ 56 (567)
..||.++|+||.+.. +...++++.+.. ..|+++ -+||++...... ...+.+.
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~-~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ 79 (264)
T cd07411 1 LTLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAER-NPNTLLLDGGDTWQGSGEALYTRGQAMVDA 79 (264)
T ss_pred CEEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhc-CCCeEEEeCCCccCCChHHhhcCChhHHHH
Confidence 369999999997533 233334333331 358775 599998653210 0112222
Q ss_pred hcccCCCCccEEEEccCCCChH---HHHHHHhccccccCcccCCceecccEEEeC-------CCCeEEEcCeEEEEEecc
Q 008383 57 VEGRSEIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 57 l~g~~~~p~ptyfv~GN~~~~~---~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~ 126 (567)
+ .. +..+++.||||... .+...+.. .+-..++.|+.+-. ..-+++.+|+||+.+|-.
T Consensus 80 l---~~--~g~da~~GNHefd~g~~~l~~~~~~--------~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~ 146 (264)
T cd07411 80 L---NA--LGVDAMVGHWEFTYGPERVRELFGR--------LNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQT 146 (264)
T ss_pred H---Hh--hCCeEEecccccccCHHHHHHHHhh--------CCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEec
Confidence 2 33 34444449999652 22222221 12346788887643 123446799999999876
Q ss_pred cCCCCC-----C--CCCCC--HHHHHHH-HHhhcCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHH
Q 008383 127 QSSEGQ-----Q--FGTYS--QDDVDAL-RALAEEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (567)
Q Consensus 127 ~~~~~~-----~--~~~~t--~~dv~~L-~~~~~~~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (567)
...... . ...|+ .+.+.++ ..+.. ..++| |+|+|..-. .-.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~iI~l~H~g~~-----------------------~~~~la 202 (264)
T cd07411 147 FPYVPIANPPRFTPGLTFGIREEELQEVVVKLRR-EEGVDVVVLLSHNGLP-----------------------VDVELA 202 (264)
T ss_pred cCCcccccCcCCCCCcEECCHHHHHHHHHHHHHH-hCCCCEEEEEecCCch-----------------------hhHHHH
Confidence 432111 0 01222 2222222 22211 23455 466664321 001233
Q ss_pred HHh-CCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcccceeEEEeccCCC
Q 008383 195 AEI-KPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 250 (567)
Q Consensus 195 ~~l-kPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~p~ 250 (567)
+++ ..-..+.||.|..+.. |+. ....|.++.-|..+. ++--++|+..
T Consensus 203 ~~~~~iDlilgGH~H~~~~~-~~~---~~~~t~v~~~g~~~~-----~vg~i~l~~~ 250 (264)
T cd07411 203 ERVPGIDVILSGHTHERTPK-PII---AGGGTLVVEAGSHGK-----FLGRLDLDVR 250 (264)
T ss_pred hcCCCCcEEEeCcccccccC-ccc---ccCCEEEEEcCcccc-----EEEEEEEEEE
Confidence 332 2456889998865432 321 234588888887665 7777777643
No 87
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.29 E-value=0.0059 Score=57.76 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=92.0
Q ss_pred HHhhcCCCcEEEEecCC-CCCC-hhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHhccccccCcccCCceeccc
Q 008383 26 VNKSAGPFDAVLCVGQF-FPDS-SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDN 103 (567)
Q Consensus 26 l~~k~GpfD~vi~~GDf-f~~~-~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~N 103 (567)
+..+-.|-|.|++.||+ .+.+ +++.++| .++ ..+|-.-|.+-|||+---.-..+|. ..+.+-
T Consensus 37 W~~~v~~eDiVllpGDiSWaM~l~ea~~Dl-~~i---~~LPG~K~m~rGNHDYWw~s~skl~------------n~lp~~ 100 (230)
T COG1768 37 WRSKVSPEDIVLLPGDISWAMRLEEAEEDL-RFI---GDLPGTKYMIRGNHDYWWSSISKLN------------NALPPI 100 (230)
T ss_pred HHhcCChhhEEEecccchhheechhhhhhh-hhh---hcCCCcEEEEecCCccccchHHHHH------------hhcCch
Confidence 33444478999999998 3321 2222233 333 5678889999999984433333332 124566
Q ss_pred EEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHH-------H--hhcCCCCcc--EEEeCCCCcccccccc
Q 008383 104 LFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALR-------A--LAEEPGIVD--LFLTNEWPSGVTNKAA 172 (567)
Q Consensus 104 l~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~-------~--~~~~~~~vD--ILLTh~wP~gI~~~~~ 172 (567)
++||++ |+ .+..+-|+|.-|-.+++.. +..||++|-+.+. . ++....+++ |+.||-+|..=.
T Consensus 101 l~~~n~-~f-~l~n~aI~G~RgW~s~~~~-~e~~te~Deki~~RE~~RLrlsa~a~l~k~~~~fivM~HYPP~s~~---- 173 (230)
T COG1768 101 LFYLNN-GF-ELLNYAIVGVRGWDSPSFD-SEPLTEQDEKIFLREIGRLRLSADAALPKGVSKFIVMTHYPPFSDD---- 173 (230)
T ss_pred Hhhhcc-ce-eEeeEEEEEeecccCCCCC-cCccchhHHHHHHHHHHHHHHHHHHhcccCcCeEEEEEecCCCCCC----
Confidence 888885 43 5555777777776555432 4568888765422 1 122334444 788999987321
Q ss_pred ccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCC
Q 008383 173 ASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGV 209 (567)
Q Consensus 173 ~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~ 209 (567)
..++ .+.+++++.|+...+.||.|.
T Consensus 174 -----------~t~~-~~sevlee~rv~~~lyGHlHg 198 (230)
T COG1768 174 -----------GTPG-PFSEVLEEGRVSKCLYGHLHG 198 (230)
T ss_pred -----------CCCc-chHHHHhhcceeeEEeeeccC
Confidence 1122 477889999999999999763
No 88
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=97.23 E-value=0.036 Score=56.26 Aligned_cols=112 Identities=14% Similarity=0.063 Sum_probs=66.9
Q ss_pred CEEEEEcCCCC----------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhcccCCCCccEEE
Q 008383 4 PRILLCGDVLG----------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVEGRSEIPIPTYF 69 (567)
Q Consensus 4 ~KILv~GDvhG----------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~g~~~~p~ptyf 69 (567)
.+||.+.|+|+ .+..+...++++.+.+ |-.++|.+||++..... ..+.+.+.+ ..++. .+.
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~-~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l---~~l~~-d~~ 75 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKEN-PNTLVLFSGDVLSPSLLSTATKGKQMVPVL---NALGV-DLA 75 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcC-CCEEEEECCCccCCccchhhcCCccHHHHH---HhcCC-cEE
Confidence 36899999993 3566666666666543 43499999999864311 001222232 33333 477
Q ss_pred EccCCCChH--H-HHHHHhccccccCcccCCceecccEEEeCC---------CCeEEEcCeEEEEEecccC
Q 008383 70 IGDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLKG---------SGNFTLHGLSVAYLSGRQS 128 (567)
Q Consensus 70 v~GN~~~~~--~-~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~---------~gv~~~~GlrIa~lgG~~~ 128 (567)
+.||||... + +...+.. .+...++.|+.+-.. .-+++.+|+||+.+|=..+
T Consensus 76 ~~GNHefd~g~~~l~~~~~~--------~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG~~~~ 138 (257)
T cd07406 76 CFGNHEFDFGEDQLQKRLGE--------SKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLGLVEE 138 (257)
T ss_pred eecccccccCHHHHHHHHhh--------CCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEEEecc
Confidence 899999642 2 2222221 123467888876442 3455679999999986643
No 89
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.16 E-value=0.0056 Score=62.09 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=65.3
Q ss_pred CEEEEEcCCCCCH----------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----HHHHHHHhcccCCCCccEEE
Q 008383 4 PRILLCGDVLGRL----------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYF 69 (567)
Q Consensus 4 ~KILv~GDvhG~~----------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyf 69 (567)
++||.++|+||.+ ..+...++++.++ +-+++|-+||++...... ...+.+.+ ..+++. ++
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~--~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l---n~~g~d-~~ 74 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKL--DNDLLVDAGDAIQGLPISDLDKGETIIKIM---NAVGYD-AV 74 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhc--CCEEEEeCCCcCCCchhhhhcCCcHHHHHH---HhcCCc-EE
Confidence 4799999999975 3344444444443 468999999998753210 01122222 334444 46
Q ss_pred EccCCCChH--H-HHHHHhccccccCcccCCceecccEEEeC-------CCCeEEEc-CeEEEEEeccc
Q 008383 70 IGDYGVGAA--K-VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLH-GLSVAYLSGRQ 127 (567)
Q Consensus 70 v~GN~~~~~--~-~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~~-GlrIa~lgG~~ 127 (567)
+.||||... + +.+.+.. .+-..++.|+.... ..-+++.+ |+|||.+|-..
T Consensus 75 ~~GNHefd~G~~~l~~~~~~--------~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~~ 135 (257)
T cd07408 75 TPGNHEFDYGLDRLKELSKE--------ADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLTT 135 (257)
T ss_pred ccccccccCCHHHHHHHHhh--------CCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeecC
Confidence 679999641 2 2222221 12346888887653 12344677 99999998663
No 90
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.05 E-value=0.038 Score=67.73 Aligned_cols=204 Identities=15% Similarity=0.099 Sum_probs=104.8
Q ss_pred CCEEEEEcCCCCCH---HHHHHHHHHHHhhcCCCcEEEE-ecCCCCCChhh----HHHHHHHhcccCCCCccEEEEccCC
Q 008383 3 PPRILLCGDVLGRL---NQLFKRVQSVNKSAGPFDAVLC-VGQFFPDSSEL----LDEFMNYVEGRSEIPIPTYFIGDYG 74 (567)
Q Consensus 3 ~~KILv~GDvhG~~---~~l~~kv~~l~~k~GpfD~vi~-~GDff~~~~~~----~~~~~~~l~g~~~~p~ptyfv~GN~ 74 (567)
.++||.++|+||.+ ..+...++++.+++ .|+|++ +||+|...... -....+.+ ..+.+ -+++.|||
T Consensus 660 ~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l---n~lg~-d~~~~GNH 733 (1163)
T PRK09419 660 ELTILHTNDFHGHLDGAAKRVTKIKEVKEEN--PNTILVDAGDVYQGSLYSNLLKGLPVLKMM---KEMGY-DASTFGNH 733 (1163)
T ss_pred EEEEEEEeecccCCCCHHHHHHHHHHHHhhC--CCeEEEecCCCCCCcchhhhcCChHHHHHH---hCcCC-CEEEeccc
Confidence 37899999999874 55555566655443 377766 99998653210 01122222 23333 36689999
Q ss_pred CCh---HHHHHHHhccc---cccCcc-cCCceecccEEEeC---------CCCeEEEcCeEEEEEecccCC-CCC-----
Q 008383 75 VGA---AKVLLAASKNS---ANQGFK-MDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS-EGQ----- 132 (567)
Q Consensus 75 ~~~---~~~~~~l~~~~---~~~~~~-~~~~~i~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~-~~~----- 132 (567)
|.. ..+...+.... ....|. ..-..++.|+++-. ..-|++.+|+|||.+|=.... ...
T Consensus 734 Efd~g~~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G~kIgiiGltt~~~~~~~~p~~ 813 (1163)
T PRK09419 734 EFDWGPDVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNGKKVGFIGLTTPETAYKTSPGN 813 (1163)
T ss_pred ccccChHHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECCEEEEEEEecccccccccCCCC
Confidence 943 23333332110 000000 01246888887532 234446799999999866321 110
Q ss_pred -CCCCCCHHHHHHHHHhh---cCCCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHh-CCCEEEEc
Q 008383 133 -QFGTYSQDDVDALRALA---EEPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEI-KPRYHIAG 205 (567)
Q Consensus 133 -~~~~~t~~dv~~L~~~~---~~~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~l-kPRYhf~G 205 (567)
....|+ +.++++++.. ....++| |+|||.--.. +. ..+.-.+.+|++++ .--..+.|
T Consensus 814 ~~~l~f~-d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~-----d~----------~~~~~~~~~lA~~v~gIDvIigG 877 (1163)
T PRK09419 814 VKNLEFK-DPAEAAKKWVKELKEKEKVDAIIALTHLGSNQ-----DR----------TTGEITGLELAKKVKGVDAIISA 877 (1163)
T ss_pred cCCcEEc-CHHHHHHHHHHHHHhhcCCCEEEEEecCCccc-----cc----------cccccHHHHHHHhCCCCCEEEeC
Confidence 012333 2233332211 1124566 5788864321 10 01122345666655 34578899
Q ss_pred cCCCccccccccCCCCcceeEEEEccCCCC
Q 008383 206 SKGVFYAREPYSNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 206 h~~~fyEr~Py~~~~~~~~TRFI~L~~~g~ 235 (567)
|.|..+... ...|-.+.-+.+|.
T Consensus 878 HsH~~~~~~-------v~~~~ivqag~~g~ 900 (1163)
T PRK09419 878 HTHTLVDKV-------VNGTPVVQAYKYGR 900 (1163)
T ss_pred CCCcccccc-------CCCEEEEeCChhHc
Confidence 988765421 23466666665554
No 91
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.00 E-value=0.084 Score=54.48 Aligned_cols=112 Identities=18% Similarity=0.118 Sum_probs=62.3
Q ss_pred CEEEEEcCCCCCHHH----------HHHHHHHHHhh---cCCCcEEEEecCCCCCChh-----hHHHHHHHhcccCCCCc
Q 008383 4 PRILLCGDVLGRLNQ----------LFKRVQSVNKS---AGPFDAVLCVGQFFPDSSE-----LLDEFMNYVEGRSEIPI 65 (567)
Q Consensus 4 ~KILv~GDvhG~~~~----------l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~-----~~~~~~~~l~g~~~~p~ 65 (567)
+.||.++|+||++.. +-..++++.++ .++--++|-+||++..... ....+ +.+ ..+.+
T Consensus 1 ltIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~-~~~---n~~g~ 76 (285)
T cd07405 1 ITILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDF-RGM---NLVGY 76 (285)
T ss_pred CEEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHH-HHH---HhhCC
Confidence 469999999997532 22333333222 2455799999998754211 00111 111 33444
Q ss_pred cEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeC------CCCeEEEcCeEEEEEeccc
Q 008383 66 PTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTLHGLSVAYLSGRQ 127 (567)
Q Consensus 66 ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg------~~gv~~~~GlrIa~lgG~~ 127 (567)
-.. +.||||..- +.+..+... ..-..++.|+++-. ..-+++.+|+|||.+|=..
T Consensus 77 Da~-~~GNHEfD~G~~~L~~~~~~-------~~fp~l~aNv~~~~g~~~~~p~~i~~~~G~kIgviG~t~ 138 (285)
T cd07405 77 DAM-AVGNHEFDNPLEVLRQQMKW-------ANFPLLSANIYQESGERLFKPYALFDLGGLKIAVIGLTT 138 (285)
T ss_pred cEE-eecccccccCHHHHHHHHhh-------CCCCEEEEEEEecCCCCccCCeEEEEECCEEEEEEEecc
Confidence 444 558999752 222222111 12346888987652 1234467999999998664
No 92
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=96.95 E-value=0.0036 Score=61.23 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCC
Q 008383 185 NTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPV 233 (567)
Q Consensus 185 ~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (567)
.....+.+++...++.+.++||.|..+... ...+.++|+|.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~-------~~~~~~~n~G~W 217 (217)
T cd07398 176 VFEEAVARLARRKGVDGVICGHTHRPALHE-------LDGKLYINLGDW 217 (217)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCCCCCeEE-------ECCEEEEECCCC
Confidence 455567788889999999999987653322 224788888863
No 93
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=96.93 E-value=0.013 Score=66.10 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=28.8
Q ss_pred ecCCCCCCCeEE-EEeccccCCCCCCCHHHHHHHHHH
Q 008383 416 LPKGPLVEDHVL-VIPVEHVPNTISTSPECEKELGRF 451 (567)
Q Consensus 416 l~kgpl~~gH~L-IiP~~H~~s~~~~~~~~~~E~~~~ 451 (567)
+++|+++-+.++ |.|..=.....+++-..+.++...
T Consensus 409 i~~G~IT~~di~~v~PF~N~l~v~~ltG~~Lk~~LE~ 445 (550)
T TIGR01530 409 ILPGEITFNDAYTFLPFGNTLVLVDMEGAELKQIIED 445 (550)
T ss_pred CCCCCcCHHHhheeCCcCceEEEEEecHHHHHHHHHH
Confidence 468999999877 889888888888888777776654
No 94
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=96.78 E-value=0.0025 Score=66.66 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=49.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
.++.|+||+||++..|..-++...... +-+.+|.+||+..-+....+.+.-++.-....|--+|++-||||..
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~g~~~-~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~ 123 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKNGLPS-PENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDH 123 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHcCCCC-ccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhh
Confidence 379999999999999886665432111 1267999999987655444444333332234566689999999964
No 95
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=96.77 E-value=0.07 Score=57.28 Aligned_cols=214 Identities=12% Similarity=0.048 Sum_probs=108.4
Q ss_pred CCEEEEEcCCCCC---HHHHHHHHHHHHhhcCCCcEEEEecCCCCC------ChhhHHHHHHHhcccC-CCCccEEEEcc
Q 008383 3 PPRILLCGDVLGR---LNQLFKRVQSVNKSAGPFDAVLCVGQFFPD------SSELLDEFMNYVEGRS-EIPIPTYFIGD 72 (567)
Q Consensus 3 ~~KILv~GDvhG~---~~~l~~kv~~l~~k~GpfD~vi~~GDff~~------~~~~~~~~~~~l~g~~-~~p~ptyfv~G 72 (567)
+++.+++||.-+. -..+-+.+.++.++. ++|+||-+||-|.. ++.-...|++.++... .+.+|-|.+.|
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~-~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNE-RVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhC-CCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 4689999996543 222333444444444 79999999997732 1122234666655432 26789999999
Q ss_pred CCCChHHHHHHHhcc-------------ccccCcccCCceecccEEEeCCCCeE--------EE--cC--eEEEEEeccc
Q 008383 73 YGVGAAKVLLAASKN-------------SANQGFKMDGFKVTDNLFWLKGSGNF--------TL--HG--LSVAYLSGRQ 127 (567)
Q Consensus 73 N~~~~~~~~~~l~~~-------------~~~~~~~~~~~~i~~Nl~~Lg~~gv~--------~~--~G--lrIa~lgG~~ 127 (567)
|||-.-...+.+... +....-.....|.+||-+|--..... ++ .+ +.|.++--.-
T Consensus 105 NHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~~yY~~~~~f~~~~~~~~~~~~~~~~~v~fifiDT~~ 184 (394)
T PTZ00422 105 QADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPNYWYHYFTHFTDTSGPSLLKSGHKDMSVAFIFIDTWI 184 (394)
T ss_pred cccccCCchhhhccccccccccccccccccccccccCCCccCCchhheeeeeeecccccccccccCCCCEEEEEEEECch
Confidence 998422222222100 00000001346788886653110000 00 11 2223222110
Q ss_pred CCCCCCCCCCCHHHHHHHHH-h--hcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEE
Q 008383 128 SSEGQQFGTYSQDDVDALRA-L--AEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIA 204 (567)
Q Consensus 128 ~~~~~~~~~~t~~dv~~L~~-~--~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~ 204 (567)
..........++.+.+.|.+ + +....+-=|.+-|.|-.......+. ..=...+..|+++.+-...++
T Consensus 185 l~~~~~~~~~~~~~w~~L~~~L~~a~k~a~WkIVvGHhPIySsG~hg~~----------~~L~~~L~PLL~ky~VdlYis 254 (394)
T PTZ00422 185 LSSSFPYKKVSERAWQDLKATLEYAPKIADYIIVVGDKPIYSSGSSKGD----------SYLSYYLLPLLKDAQVDLYIS 254 (394)
T ss_pred hcccCCccccCHHHHHHHHHHHHhhccCCCeEEEEecCceeecCCCCCC----------HHHHHHHHHHHHHcCcCEEEE
Confidence 00000001123445444443 2 2212334578888888766432211 001236778889999999999
Q ss_pred ccCCCccccccccCCCCcceeEEEEccCCC
Q 008383 205 GSKGVFYAREPYSNVDAVHVTRFLGLAPVG 234 (567)
Q Consensus 205 Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g 234 (567)
||.|.+ |+.. ...|.||.-|.-+
T Consensus 255 GHDH~l-q~i~------~~gt~yIvSGaGs 277 (394)
T PTZ00422 255 GYDRNM-EVLT------DEGTAHINCGSGG 277 (394)
T ss_pred ccccce-EEec------CCCceEEEeCccc
Confidence 998754 5431 2247788777643
No 96
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=96.74 E-value=0.0034 Score=64.34 Aligned_cols=73 Identities=11% Similarity=0.240 Sum_probs=49.9
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
.++|.|+||+||++..+..-++.+.. .+-+-++++||+..-+....+-+.-++.-....|--++++-||||..
T Consensus 27 ~~~i~vvGDiHG~~~~l~~ll~~~~~--~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~ 99 (271)
T smart00156 27 SAPVTVCGDIHGQFDDLLRLFDLNGP--PPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESR 99 (271)
T ss_pred CCCEEEEEeCcCCHHHHHHHHHHcCC--CCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHH
Confidence 36899999999999988766654432 24689999999977544433333322221234566789999999964
No 97
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.64 E-value=0.0035 Score=62.52 Aligned_cols=68 Identities=12% Similarity=0.111 Sum_probs=45.2
Q ss_pred EEEEEcCCC-CC---------------HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCcc
Q 008383 5 RILLCGDVL-GR---------------LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPIP 66 (567)
Q Consensus 5 KILv~GDvh-G~---------------~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~p 66 (567)
+.|+++|+| |. +.++++++.++-++. ++|.||++||++.... ....++.+++. .+..+
T Consensus 16 ~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~-~~d~vIi~GDl~h~~~~~~~~~~~~~~l~---~~~~~ 91 (225)
T TIGR00024 16 DKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKY-GIEALIINGDLKHEFKKGLEWRFIREFIE---VTFRD 91 (225)
T ss_pred CeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhc-CCCEEEEcCccccccCChHHHHHHHHHHH---hcCCc
Confidence 689999999 42 123455555554444 4899999999975321 22335555653 34569
Q ss_pred EEEEccCCCC
Q 008383 67 TYFIGDYGVG 76 (567)
Q Consensus 67 tyfv~GN~~~ 76 (567)
+++|.||||.
T Consensus 92 v~~V~GNHD~ 101 (225)
T TIGR00024 92 LILIRGNHDA 101 (225)
T ss_pred EEEECCCCCC
Confidence 9999999984
No 98
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=96.56 E-value=0.0053 Score=63.99 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=48.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
.+|.|+||+||++..|.+-+..... .+-|-++++||+..-+....+.+.-++.-....|--++.+-||||..
T Consensus 43 ~~i~ViGDIHG~~~dL~~l~~~~g~--~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~ 114 (305)
T cd07416 43 APVTVCGDIHGQFYDLLKLFEVGGS--PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECR 114 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCC--CCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHH
Confidence 4799999999999988765553321 13589999999976544434333333322244566789999999953
No 99
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=96.37 E-value=0.079 Score=54.65 Aligned_cols=173 Identities=12% Similarity=0.034 Sum_probs=87.0
Q ss_pred HHHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHHHHHHhcccCCCCccEEEEccCCCChHH----------
Q 008383 20 FKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---------- 79 (567)
Q Consensus 20 ~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~---------- 79 (567)
-+.++.+.+...++|+||+.||+....... ...+.+.+.. .-..+|+|++.||||..+.
T Consensus 56 ~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~pv~~~~GNHD~~p~~~~~~~~~~~ 134 (296)
T cd00842 56 ESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKK-AFPDTPVYPALGNHDSYPVNQFPPNNSPS 134 (296)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHH-hCCCCCEEEcCCCCCCCcccccCCccccc
Confidence 334444544445789999999997653210 1112222211 1246899999999987432
Q ss_pred -HHHHHhccccccCcccCCceeccc--EEEeCCCCeE--E-EcCeEEEEEecccCCCCCC-----CCCCCHHHHHHHHHh
Q 008383 80 -VLLAASKNSANQGFKMDGFKVTDN--LFWLKGSGNF--T-LHGLSVAYLSGRQSSEGQQ-----FGTYSQDDVDALRAL 148 (567)
Q Consensus 80 -~~~~l~~~~~~~~~~~~~~~i~~N--l~~Lg~~gv~--~-~~GlrIa~lgG~~~~~~~~-----~~~~t~~dv~~L~~~ 148 (567)
.++.+... + ..++..+ -.+. +.|-+ . ..|++|.+|.-..-..... ......++++.|++.
T Consensus 135 ~~~~~~~~~-w-------~~~l~~~~~~~~~-~ggYY~~~~~~~l~vI~Lnt~~~~~~~~~~~~~~~~~~~~Ql~WL~~~ 205 (296)
T cd00842 135 WLYDALAEL-W-------KSWLPEEAEETFK-KGGYYSVPVKPGLRVISLNTNLYYKKNFWLLGSNETDPAGQLQWLEDE 205 (296)
T ss_pred HHHHHHHHH-H-------HhhcCHHHHHHhh-cceEEEEEcCCCeEEEEEeCccccccChhhhccCCCCHHHHHHHHHHH
Confidence 12211100 0 0000000 0011 12323 3 4688888886543211110 011124455555432
Q ss_pred -h--cCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhC--CCEEEEccCCCcccc
Q 008383 149 -A--EEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIK--PRYHIAGSKGVFYAR 213 (567)
Q Consensus 149 -~--~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lk--PRYhf~Gh~~~fyEr 213 (567)
. +..+.-=|++.|.+|...... . .......+.+|+++.+ ....|+||.|...-+
T Consensus 206 L~~a~~~~~~v~I~~HiPp~~~~~~-~----------~~~~~~~~~~ii~~y~~~i~~~~~GH~H~d~~~ 264 (296)
T cd00842 206 LQEAEQAGEKVWIIGHIPPGVNSYD-T----------LENWSERYLQIINRYSDTIAGQFFGHTHRDEFR 264 (296)
T ss_pred HHHHHHCCCeEEEEeccCCCCcccc-c----------chHHHHHHHHHHHHHHHhhheeeecccccceEE
Confidence 1 112222368899988643210 0 0134667888888887 788999998764333
No 100
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.13 Score=57.71 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=116.5
Q ss_pred CCEEEEEcCCCCCHH---------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--hh---HHHHHHHhcccCC
Q 008383 3 PPRILLCGDVLGRLN---------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--EL---LDEFMNYVEGRSE 62 (567)
Q Consensus 3 ~~KILv~GDvhG~~~---------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~~---~~~~~~~l~g~~~ 62 (567)
++.||.+.|+||++. .+...++++.++. +-.++|-+||++.... .. ..-..+.+ ..
T Consensus 26 ~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~-~~~llld~GD~~~G~~l~~~~~~g~~~~~~m---N~ 101 (517)
T COG0737 26 KLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAEN-KNVLLLDAGDLIQGSPLSDYLTKGEPTVDLL---NA 101 (517)
T ss_pred eEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhc-CCeEEEeCCcccCCccccccccCCChHHHHH---hh
Confidence 578999999999998 6666666665554 3578999999866411 00 00111121 23
Q ss_pred CCccEEEEccCCCChHH--HHHHHhccccccCcccCCceecccEEEeC--------CCCeEEEcCeEEEEEecccC--CC
Q 008383 63 IPIPTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK--------GSGNFTLHGLSVAYLSGRQS--SE 130 (567)
Q Consensus 63 ~p~ptyfv~GN~~~~~~--~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg--------~~gv~~~~GlrIa~lgG~~~--~~ 130 (567)
++. -+.+.||||.... .+..+... ..-..++.|++.=. ..-|++.+|+|||.+|=.-+ ..
T Consensus 102 m~y-Da~tiGNHEFd~g~~~l~~~~~~-------~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~KIgiIG~~~~~~~~ 173 (517)
T COG0737 102 LGY-DAMTLGNHEFDYGLEALARLLDE-------AKFPVLSANVYDKNSTGPPFFKPYAIKEVGGVKIGIIGLTTPTIPT 173 (517)
T ss_pred cCC-cEEeecccccccCHHHHHHHHhc-------cCCceEEeeeEecCCCCccCcCCeEEEecCCeEEEEEEecCCcccc
Confidence 333 3566679997632 23333211 12236888887661 23345678999999985521 11
Q ss_pred -CC----CCCCCCHHHHHHHHHhhc-C-CCCcc--EEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCE
Q 008383 131 -GQ----QFGTYSQDDVDALRALAE-E-PGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRY 201 (567)
Q Consensus 131 -~~----~~~~~t~~dv~~L~~~~~-~-~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRY 201 (567)
.. .-..|+ +.++++.+... . ..++| |+|||..-..-...... .+ +...+ .. ..+..
T Consensus 174 ~~~~~~~~~~~f~-d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~~--~~--------~~~~~--~~--~~iD~ 238 (517)
T COG0737 174 WEKPNAIEGVTFR-DPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELASE--VP--------GDVDV--AV--PGIDL 238 (517)
T ss_pred cccccccCCcEEc-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCcccccccc--cc--------ccccc--cc--cCcce
Confidence 11 012343 33444443220 0 11266 58899655433221110 11 00000 00 33889
Q ss_pred EEEccCCCccccccccCCCCcceeEEEEccCCCCcccceeEEEeccCCC
Q 008383 202 HIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPTPA 250 (567)
Q Consensus 202 hf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~p~ 250 (567)
.|.||.|..|+..-+. .....|-.+..|.+|. ++.-+.|+-.
T Consensus 239 i~~GH~H~~~~~~~~~--~~~~~t~ivqag~~gk-----~vG~~di~~d 280 (517)
T COG0737 239 IIGGHSHTVFPGGDKP--GTVNGTPIVQAGEYGK-----YVGVLDITFD 280 (517)
T ss_pred EeccCCcccccCCccc--CccCCEEEEccChhhC-----ceeEEEEEEc
Confidence 9999988766654211 1344688888888875 6766666553
No 101
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=96.35 E-value=0.0067 Score=62.86 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=48.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
.++.|+||+||++..+.+.+..... .+-+-+|++||+..-+....+-+.-++.-....|--++.+-||||..
T Consensus 50 ~~i~viGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~ 121 (293)
T cd07414 50 APLKICGDIHGQYYDLLRLFEYGGF--PPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA 121 (293)
T ss_pred CceEEEEecCCCHHHHHHHHHhcCC--CCcceEEEEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchh
Confidence 4799999999999988766654322 14578999999977544333333322222234566689999999964
No 102
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=96.31 E-value=0.1 Score=58.88 Aligned_cols=113 Identities=18% Similarity=0.071 Sum_probs=62.4
Q ss_pred CCEEEEEcCCCCCHHH----------HHHHHHHHHh---hcCCCcEEEEecCCCCCChhh-H---HHHHHHhcccCCCCc
Q 008383 3 PPRILLCGDVLGRLNQ----------LFKRVQSVNK---SAGPFDAVLCVGQFFPDSSEL-L---DEFMNYVEGRSEIPI 65 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~----------l~~kv~~l~~---k~GpfD~vi~~GDff~~~~~~-~---~~~~~~l~g~~~~p~ 65 (567)
++.||.++|+||.+.. +-..++++.+ +.+|=-++|-+||+|...... . .-.-+.+ ..+++
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~m---N~~g~ 110 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGM---NLIGY 110 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHH---hcCCC
Confidence 3679999999998741 1222232222 224446899999998642110 0 0001111 33444
Q ss_pred cEEEEccCCCChHH--HHHHHhccccccCcccCCceecccEEEeC-------CCCeEEEcCeEEEEEecc
Q 008383 66 PTYFIGDYGVGAAK--VLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 66 ptyfv~GN~~~~~~--~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~~GlrIa~lgG~ 126 (567)
- +++.||||..-. .+..+-.. ..-..++.|+++-. ..-+++.+|+|||.+|=.
T Consensus 111 D-a~tlGNHEFD~G~~~L~~~~~~-------a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kIgiiG~~ 172 (551)
T PRK09558 111 D-AMAVGNHEFDNPLSVLRKQEKW-------AKFPFLSANIYQKSTGERLFKPYAIFDRQGLKIAVIGLT 172 (551)
T ss_pred C-EEcccccccCcCHHHHHHhhcc-------CCCCEEEEEEEECCCCCcccCCeEEEEECCEEEEEEEEe
Confidence 4 455699996522 22222111 12347888987642 223445789999999865
No 103
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=96.28 E-value=0.0076 Score=62.22 Aligned_cols=206 Identities=13% Similarity=0.101 Sum_probs=102.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHH----
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---- 79 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~---- 79 (567)
.++.|+||+||++..|..-+..... .+-+-+|++||+..-+....+-+.-++.-....|-.+|++-||||...-
T Consensus 42 ~~i~vvGDIHG~~~dL~~ll~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~y 119 (285)
T cd07415 42 SPVTVCGDIHGQFYDLLELFRVGGD--PPDTNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVY 119 (285)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHcCC--CCCCeEEEEeEECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhc
Confidence 4689999999999988765554321 1457899999997654443333322222123456679999999996320
Q ss_pred -HHHHHhccccccCcccCC--ceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CC
Q 008383 80 -VLLAASKNSANQGFKMDG--FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PG 153 (567)
Q Consensus 80 -~~~~l~~~~~~~~~~~~~--~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~---~~ 153 (567)
+..+... .. .... ..+....-+|.=.- .+++ +|..+-|..++... +.++++.+...... .-
T Consensus 120 gf~~e~~~-~y----~~~~l~~~~~~~f~~lPlaa--ii~~-~i~cvHgGi~p~~~-----~~~~i~~i~r~~~~~~~~~ 186 (285)
T cd07415 120 GFYDECLR-KY----GNANVWKYCTDLFDYLPLAA--LIDN-QIFCVHGGLSPSID-----TLDQIRAIDRFQEVPHEGP 186 (285)
T ss_pred chhHHHHH-hc----CchHHHHHHHHHHHHhHHHh--EeCC-eEEEEcCCCCCCcc-----cHHHhhcccCCCCCCCCCC
Confidence 1111100 00 0000 00001111111000 1334 33333333332111 24445554432111 11
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEcc
Q 008383 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 154 ~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
-.|+|-+ +|-.. ..... -+.+.. ...|..++.+.+++..=++.+=||+- ..|+.. + +..-+|-|=+..
T Consensus 187 ~~dllWs-DP~~~-~~~~~---~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~---~~~~~TvfSa~~ 256 (285)
T cd07415 187 MCDLLWS-DPDDI-EGWGI---SPRGAG-YLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWM-F---DDKLVTVWSAPN 256 (285)
T ss_pred ccceEec-CCCcc-CCCCc---CCCCCc-cccCHHHHHHHHHHCCCeEEEEcCccccceEEEe-c---CCcEEEEecCCc
Confidence 2455544 22211 11111 112211 34799999999999999999999962 355532 1 135578887665
Q ss_pred CCC
Q 008383 232 PVG 234 (567)
Q Consensus 232 ~~g 234 (567)
-++
T Consensus 257 y~~ 259 (285)
T cd07415 257 YCY 259 (285)
T ss_pred ccC
Confidence 543
No 104
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.26 E-value=0.093 Score=54.00 Aligned_cols=111 Identities=12% Similarity=0.015 Sum_probs=62.9
Q ss_pred CEEEEEcCCCCCH---------------------HHHHHHHHHHHhhcCCCcEEEEecCCCCCChh----hHHHHHHHhc
Q 008383 4 PRILLCGDVLGRL---------------------NQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSE----LLDEFMNYVE 58 (567)
Q Consensus 4 ~KILv~GDvhG~~---------------------~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~----~~~~~~~~l~ 58 (567)
++||.++|+||++ ..+...++++.+++ +=-+++-+||++..... ......+.+
T Consensus 1 l~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~-~~~l~ld~GD~~~gs~~~~~~~g~~~~~~l- 78 (281)
T cd07409 1 LTILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAEN-PNVLFLNAGDAFQGTLWYTLYKGNADAEFM- 78 (281)
T ss_pred CEEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcC-CCEEEEeCCCCCCCcchhhhcCChHHHHHH-
Confidence 4799999999865 44555555555443 32355669998764221 011122222
Q ss_pred ccCCCCccEEEEccCCCChH---HHHHHHhccccccCcccCCceecccEEEeCC----------CCeEEEcCeEEEEEec
Q 008383 59 GRSEIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLHGLSVAYLSG 125 (567)
Q Consensus 59 g~~~~p~ptyfv~GN~~~~~---~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~----------~gv~~~~GlrIa~lgG 125 (567)
..+++... +.||||... .+.+.+.. .+...++.|+..-.. .-+++.+|+|||.+|=
T Consensus 79 --n~~g~D~~-~lGNHefd~G~~~l~~~~~~--------~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~ 147 (281)
T cd07409 79 --NLLGYDAM-TLGNHEFDDGVEGLAPFLNN--------LKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGY 147 (281)
T ss_pred --HhcCCCEE-EeccccccCCHHHHHHHHHh--------CCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEE
Confidence 44556544 558999752 12222221 123467778765431 2455689999999986
Q ss_pred cc
Q 008383 126 RQ 127 (567)
Q Consensus 126 ~~ 127 (567)
..
T Consensus 148 ~~ 149 (281)
T cd07409 148 TT 149 (281)
T ss_pred ec
Confidence 53
No 105
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=96.24 E-value=0.0087 Score=62.26 Aligned_cols=207 Identities=12% Similarity=0.054 Sum_probs=102.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHH----
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK---- 79 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~---- 79 (567)
.++.|+||+||++..+...+..+... +-+-+|++||+..-+....+-+.-++.-....|--++++-||||...-
T Consensus 43 ~~i~vvGDIHG~~~~L~~l~~~~~~~--~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~ 120 (303)
T PTZ00239 43 APVNVCGDIHGQFYDLQALFKEGGDI--PNANYIFIGDFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVY 120 (303)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCCC--CCceEEEeeeEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhc
Confidence 35899999999999888666543321 457899999997654433333333322223446668999999996320
Q ss_pred -HHHHHhccccccCcccCCc--eecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcC---CC
Q 008383 80 -VLLAASKNSANQGFKMDGF--KVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEE---PG 153 (567)
Q Consensus 80 -~~~~l~~~~~~~~~~~~~~--~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~---~~ 153 (567)
+.++... .. ..... .+....-+|.=.- .+++-.++.=||.-+ ... +.++++.+...... ..
T Consensus 121 gf~~e~~~-ky----~~~~~~~~~~~~f~~LPlaa--ii~~~i~cvHgGi~p-~~~-----~l~~i~~i~r~~~~~~~~~ 187 (303)
T PTZ00239 121 GFYEEILR-KY----GNSNPWRLFMDVFDCLPLAA--LIEGQILCVHGGLSP-DMR-----TIDQIRTIDRKIEIPHEGP 187 (303)
T ss_pred ChHHHHHH-Hh----cChhHHHHHHHHHHhCchhe--EEcCeEEEEcCccCc-ccc-----cHhhhccccCCCCCCCCCC
Confidence 1111100 00 00000 0011111222111 234544444444422 111 23444444322111 11
Q ss_pred CccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEcc
Q 008383 154 IVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLA 231 (567)
Q Consensus 154 ~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~ 231 (567)
-.|||-+- |- ....... -+.+. ....|.+++.+.+++.+=++.+=||+- ..|+.. | .+..-+|-|=+..
T Consensus 188 ~~dllWsD-P~-~~~~~~~---~~Rg~-g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~-~--~~~~~iTvfSa~~ 258 (303)
T PTZ00239 188 FCDLMWSD-PE-EVEYWAV---NSRGA-GYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYW-F--PDQNLVTVWSAPN 258 (303)
T ss_pred ceeeEecC-cc-ccCCCcc---CCCCC-ccccCHHHHHHHHHHCCCcEEEEcChhhccceEEE-e--CCCeEEEEECCCc
Confidence 24544432 21 1111111 11121 135799999999999999999999962 345431 2 1123578887665
Q ss_pred CCC
Q 008383 232 PVG 234 (567)
Q Consensus 232 ~~g 234 (567)
-++
T Consensus 259 Y~~ 261 (303)
T PTZ00239 259 YCY 261 (303)
T ss_pred ccC
Confidence 443
No 106
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=96.22 E-value=0.0074 Score=62.55 Aligned_cols=206 Identities=13% Similarity=0.135 Sum_probs=101.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHH-----
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~----- 79 (567)
.+.|+||+||++..|.+-++.+.. .+.+-++++||+..-+....+-+.-++.-....|..++.+-||||...-
T Consensus 53 p~~ViGDIHG~~~~L~~l~~~~~~--~~~~~~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~g 130 (294)
T PTZ00244 53 PVRVCGDTHGQYYDLLRIFEKCGF--PPYSNYLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYG 130 (294)
T ss_pred CceeeccCCCCHHHHHHHHHHcCC--CCcccEEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccC
Confidence 488999999999988876665432 2567888999997655443333332222123356679999999995310
Q ss_pred HHHHHhccccccCcccCC-ceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCC-C--Cc
Q 008383 80 VLLAASKNSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP-G--IV 155 (567)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~-~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~-~--~v 155 (567)
+.++... .. ...- ..+....-+|.-.- .+++-.+..=||.-+ .. -+.++++.+....... . -.
T Consensus 131 f~~e~~~-~y----~~~l~~~~~~~f~~lPlaa--ii~~~il~vHgGi~p-~~-----~~l~~i~~i~rp~~~~~~~~~~ 197 (294)
T PTZ00244 131 FFDDVKR-RY----NIKLFKAFTDVFNTMPVCC--VISEKIICMHGGLSP-DL-----TSLASVNEIERPCDVPDRGILC 197 (294)
T ss_pred hHHHHHH-Hh----hHHHHHHHHHHHHhCchhe--EecCeeEEEcCCCCc-hh-----hHHHHhhhhccccCCCccchhh
Confidence 0111100 00 0000 00111111111100 123323333334322 10 0233344443211110 1 13
Q ss_pred cEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEccCC
Q 008383 156 DLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPV 233 (567)
Q Consensus 156 DILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~ 233 (567)
|+|-+- |-..+..... .+.+.. ...|.+++.+.+++..=.+.+=||+- ..|+.. . +..-+|-|=+..-+
T Consensus 198 dllWsD-P~~~~~~~~~---~~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~---~-~~~~iTvfSa~~Y~ 268 (294)
T PTZ00244 198 DLLWAD-PEDEVRGFLE---SDRGVS-YLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFF---A-SRQLVTVFSAPNYC 268 (294)
T ss_pred eeeecC-cccccCCCCc---CCCCCc-cccCHHHHHHHHHHcCCcEEEEcCccccCceEEc---C-CCeEEEEeCCcccc
Confidence 544332 2111111111 112211 35799999999999999999999963 345531 2 24668888766655
Q ss_pred C
Q 008383 234 G 234 (567)
Q Consensus 234 g 234 (567)
|
T Consensus 269 ~ 269 (294)
T PTZ00244 269 G 269 (294)
T ss_pred C
Confidence 4
No 107
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=96.18 E-value=0.01 Score=62.07 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=103.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~ 83 (567)
.+|.|+||+||++..|.+-+...... +-+-+|++||+..-+....+.+.-++.-....|-.++.+-||||.. .+..
T Consensus 59 ~~i~vvGDIHG~~~dL~~l~~~~g~~--~~~~ylfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~--~~~~ 134 (320)
T PTZ00480 59 APLKICGDVHGQYFDLLRLFEYGGYP--PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECA--SINR 134 (320)
T ss_pred CCeEEEeecccCHHHHHHHHHhcCCC--CcceEEEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchh--hhhh
Confidence 46999999999999887655533221 3578899999976544333333333222244566789999999963 1111
Q ss_pred Hhc--cccccCcccCC-ceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCC---CCccE
Q 008383 84 ASK--NSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP---GIVDL 157 (567)
Q Consensus 84 l~~--~~~~~~~~~~~-~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~---~~vDI 157 (567)
... .+....+...- ..+....-+|.-.- .+++-.+..=||.-+ .-. +-++++.+....... --.|+
T Consensus 135 ~ygF~~e~~~~y~~~l~~~~~~~F~~LPlaA--iI~~~i~cvHGGI~p-~~~-----~l~~i~~i~rp~~~~~~~~~~dl 206 (320)
T PTZ00480 135 IYGFYDECKRRYTIKLWKTFTDCFNCLPVAA--LIDEKILCMHGGLSP-ELS-----NLEQIRRIMRPTDVPDTGLLCDL 206 (320)
T ss_pred hcchHHHHHhhcCHHHHHHHHHHHHhccHhh--eecCcEEEEcCCcCc-ccC-----CHHHHhcccCCCCCCccchhhhe
Confidence 100 00000000000 00001111111111 133433333344422 111 234444433211100 11344
Q ss_pred EEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEccCCCC
Q 008383 158 FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPVGN 235 (567)
Q Consensus 158 LLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~g~ 235 (567)
|-+ +|-..+..... -+.+. ....|.+++.+.+++..=.+.+=||+- ..|+.. . +..-+|-|=+..-+|.
T Consensus 207 lWS-DP~~~~~~~~~---s~RG~-g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~---~-~~~~iTvFSa~~Y~~~ 277 (320)
T PTZ00480 207 LWS-DPDKDVQGWAD---NERGV-SYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFF---S-KRQLVTLFSAPNYCGE 277 (320)
T ss_pred eec-CcccccCCCcc---CCCCC-ccccCHHHHHHHHHhCCCcEEEEcCccccCceEEe---C-CCcEEEEeCCcccCCC
Confidence 433 22111211111 11221 134799999999999999999999963 345532 2 2466899987666554
No 108
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=96.16 E-value=0.074 Score=54.86 Aligned_cols=117 Identities=12% Similarity=-0.018 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCCh--h----hHHHHHHHhccc
Q 008383 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSS--E----LLDEFMNYVEGR 60 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~--~----~~~~~~~~l~g~ 60 (567)
+++||.++|+||.+. .+.+.+++..++.++--++|-+||++.... . .-.-..+.+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~m--- 81 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIF--- 81 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHH---
Confidence 578999999999864 333444433233344336677999866321 0 001112222
Q ss_pred CCCCccEEEEccCCCCh--HHHHHHHhccccccCcccCCceecccEEEeCC----------CCeEEEc-CeEEEEEeccc
Q 008383 61 SEIPIPTYFIGDYGVGA--AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG----------SGNFTLH-GLSVAYLSGRQ 127 (567)
Q Consensus 61 ~~~p~ptyfv~GN~~~~--~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~----------~gv~~~~-GlrIa~lgG~~ 127 (567)
..++. =+++.||||.. ...++.+..... ...-..++.|+++-.. .-|++.+ |+|||.+|=..
T Consensus 82 N~mgy-Da~tlGNHEFd~g~~~l~~l~~~~~----~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~~~~G~kIgiiGltt 156 (282)
T cd07407 82 RMMPY-DLLTIGNHELYNYEVADDEYEGFVP----SWGDRYLTSNVDITDDSGLLVPIGSRYRKFTTKHGLRVLAFGFLF 156 (282)
T ss_pred HhcCC-cEEeecccccCccccHHHHHHHHHh----hcCCCEEEEEEEEeCCCCcccccccceEEEEcCCCcEEEEEEEec
Confidence 22323 36788999974 212222211000 0123478899876531 2233555 99999998653
No 109
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=96.15 E-value=0.01 Score=62.14 Aligned_cols=211 Identities=14% Similarity=0.168 Sum_probs=103.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLA 83 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~ 83 (567)
.++.|+||+||.+..+..-+....-.. +-|-+|.+||+..-+....+-+.-++.-....|--++.+-||||.. .+..
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~-~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~--~~~~ 136 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPS-ETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETD--NMNK 136 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCC-ccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchH--HHHH
Confidence 469999999999998876554332110 1268999999976544434433333221234456689999999963 2222
Q ss_pred Hhc--cccccCcccCC-ceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCC---CCccE
Q 008383 84 ASK--NSANQGFKMDG-FKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEP---GIVDL 157 (567)
Q Consensus 84 l~~--~~~~~~~~~~~-~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~---~~vDI 157 (567)
... .+....+...- ..+...+-+|.-.- .+++-.+..=||..+.. ..+-++++.+....... --.|+
T Consensus 137 ~~gf~~e~~~k~~~~l~~~~~~~f~~LPlaa--ii~~~~~~vHgGi~~~~-----~~~l~~i~~i~r~~~~~~~~~~~dl 209 (316)
T cd07417 137 MYGFEGEVKAKYNEQMFDLFSEVFNWLPLAH--LINGKVLVVHGGLFSDD-----GVTLDDIRKIDRFRQPPDSGLMCEL 209 (316)
T ss_pred HhhhcchhhhcccHHHHHHHHHHHHhchHhh--eeCCeEEEEccccccCC-----CccHHHhhcccCCCCCCccccceee
Confidence 110 00000000000 00111111222111 23443344344442221 12344455444321110 12344
Q ss_pred EEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCC--CccccccccCCCCcceeEEEEccCCC
Q 008383 158 FLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKG--VFYAREPYSNVDAVHVTRFLGLAPVG 234 (567)
Q Consensus 158 LLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~--~fyEr~Py~~~~~~~~TRFI~L~~~g 234 (567)
|-+ +|-. ...... -+.+.. ...|.+++.+.+++..=++.+-||+- ..|+.. . +..-+|-|=+..-+|
T Consensus 210 lWs-DP~~-~~~~~~---s~Rg~g-~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~---~-~~~~~TvfSa~~Y~~ 278 (316)
T cd07417 210 LWS-DPQP-QPGRSP---SKRGVG-CQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVE---H-DGKCITVFSAPNYCD 278 (316)
T ss_pred eec-CCCC-CCCCCc---cCCCCc-eEeCHHHHHHHHHHcCCcEEEECCcccceeEEEe---c-CCeEEEEeCCccccC
Confidence 433 2111 110001 111211 24689999999999999999999963 355542 1 245688887765444
No 110
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=96.14 E-value=0.014 Score=55.26 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=42.2
Q ss_pred EEEcCCCCCHHHHH--------------H-HHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEc
Q 008383 7 LLCGDVLGRLNQLF--------------K-RVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 7 Lv~GDvhG~~~~l~--------------~-kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
.+++|+|=...... + .++.+++.-.+.|.||++||++..... ....+++ .+.+.|+++|.
T Consensus 2 ~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~--~~~~~~l---~~~~~~~~~v~ 76 (168)
T cd07390 2 YFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKA--GTELELL---SRLNGRKHLIK 76 (168)
T ss_pred eEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCCh--HHHHHHH---HhCCCCeEEEe
Confidence 57788886544332 2 245555544467999999999875432 1113333 34567899999
Q ss_pred cCCCCh
Q 008383 72 DYGVGA 77 (567)
Q Consensus 72 GN~~~~ 77 (567)
||||..
T Consensus 77 GNHD~~ 82 (168)
T cd07390 77 GNHDSS 82 (168)
T ss_pred CCCCch
Confidence 999853
No 111
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=96.03 E-value=0.013 Score=62.41 Aligned_cols=73 Identities=14% Similarity=0.230 Sum_probs=47.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
.+|.|+||+||.+..|...++...-.. +-+.+|++||+..-+....+-+.-++.-....|--+|.+-||||..
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~-~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~ 138 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPD-QNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESK 138 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCC-CCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccc
Confidence 468999999999998886655432111 1246899999976444333333322221234566699999999963
No 112
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=95.81 E-value=0.024 Score=59.25 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=72.4
Q ss_pred CCCCccccCCC--CCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhc---
Q 008383 388 SKECWFCLSSP--SVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQ--- 462 (567)
Q Consensus 388 ~~~C~FC~~~~--~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~--- 462 (567)
...|.||-.-. .-.+.+||..++++-++.|=...-|-+++|+|++|+..+.++++++.++|-...+.+...|.+.
T Consensus 184 ~~~~~~~~~ve~E~~~~~R~v~e~~~~~a~~Pf~a~~pfEv~i~pk~hv~~l~~~sdee~~~lA~ilk~~~~~y~~~~~~ 263 (338)
T COG1085 184 NGSCMYCDLVEREKGDGERIVVENDHFLAFVPFWARWPFEVLIYPKEHVSFLTDLSDEELKDLAEILKKLLARYDNLFGN 263 (338)
T ss_pred cCCchHHHHHHHHhccCceEEecCceeEEeccccccCceEEEeccHHHhhhhhhCCHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34799996432 2345689988888888888788888999999999999999999999999988877777666542
Q ss_pred C--CceEEEE-ecC--CCCCeeEEEEee
Q 008383 463 G--KEAVFFE-WLS--KRGTHANLQAVP 485 (567)
Q Consensus 463 g--~~~v~~E-~~~--~~~~H~hi~~vP 485 (567)
. +...|.- ..+ ..-.|+|+|++|
T Consensus 264 ~fpY~m~~h~ap~~~~~~~~~~h~~~~p 291 (338)
T COG1085 264 SFPYSMGFHQAPFNEVNEHYHLHAEIYP 291 (338)
T ss_pred CCceeeeeecCCCCcccccceEEEEEcc
Confidence 1 3344443 112 124689999998
No 113
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=95.77 E-value=0.2 Score=50.98 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=62.7
Q ss_pred EEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHH-HH
Q 008383 5 RILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK-VL 81 (567)
Q Consensus 5 KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~-~~ 81 (567)
|||++||+-|+ ...+.+.+.++.++. +.|++|.-||-............+.+ ..+++- +++.|||+.... ++
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~-~~D~vi~NgEn~~gg~gl~~~~~~~L---~~~G~D-~iTlGNH~fD~gel~ 75 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEY-KIDFVIANGENAAGGKGITPKIAKEL---LSAGVD-VITMGNHTWDKKEIL 75 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHC-CCCEEEECCccccCCCCCCHHHHHHH---HhcCCC-EEEecccccCcchHH
Confidence 69999999997 566677788876666 58999999997543211112223332 345555 445589986543 33
Q ss_pred HHHhccccccCcccCCceecccEEE--eCC-CCeEEEcCeEEEEEecc
Q 008383 82 LAASKNSANQGFKMDGFKVTDNLFW--LKG-SGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~i~~Nl~~--Lg~-~gv~~~~GlrIa~lgG~ 126 (567)
+.+... .-.-.+-|+.. -++ ..+++.+|++||.++-.
T Consensus 76 ~~l~~~--------~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~ 115 (255)
T cd07382 76 DFIDEE--------PRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLM 115 (255)
T ss_pred HHHhcC--------cCceEeeecCCCCCCCCeEEEEECCEEEEEEEEe
Confidence 433211 00111223211 122 24556789999988743
No 114
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=95.76 E-value=0.061 Score=54.90 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=45.5
Q ss_pred CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
||||++||+-|+ ...|-+.+..+.+++ +.|++|+-||.....-...++..+.| .+.++-++-+ |||....
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~-~~D~vIaNgEn~~gG~Gi~~~~~~~L---~~~GvDviT~-GNH~~Dk 72 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKY-QADLVIANGENTTHGKGLTLKIYEFL---KQSGVNYITM-GNHTWFQ 72 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhC-CCCEEEEcCcccCCCCCCCHHHHHHH---HhcCCCEEEc-cchhccC
Confidence 799999999999 555666677777666 58999999997543211112222222 3455554444 7998653
No 115
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.085 Score=48.52 Aligned_cols=111 Identities=20% Similarity=0.276 Sum_probs=67.4
Q ss_pred CEEEEEcCCCC--CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHH
Q 008383 4 PRILLCGDVLG--RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (567)
Q Consensus 4 ~KILv~GDvhG--~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~ 81 (567)
|-+|++||.|= +-..|=.|.+++. --|++.-++|+|++.+ .+..+|+ +.+.--+=+|-|.-+
T Consensus 1 mLvL~lgD~HiP~Ra~~Lp~KFkklL-vPgki~hilctGNlcs------~e~~dyl---k~l~~dvhiVrGeFD------ 64 (183)
T KOG3325|consen 1 MLVLVLGDLHIPHRANDLPAKFKKLL-VPGKIQHILCTGNLCS------KESYDYL---KTLSSDVHIVRGEFD------ 64 (183)
T ss_pred CEEEEeccccCCccccccCHHHHhcc-CCCceeEEEEeCCcch------HHHHHHH---HhhCCCcEEEecccC------
Confidence 45899999985 3333434444444 2468999999999876 3566776 344344555666322
Q ss_pred HHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEe
Q 008383 82 LAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLT 160 (567)
Q Consensus 82 ~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLT 160 (567)
+|+.|=. .+++|++-+||++..|-.-.+.. ..+.+..|.. .-+||||||
T Consensus 65 --------------------~~~~yP~-~kvvtvGqfkIG~chGhqViP~g-----d~~sL~~LaR----qldvDILl~ 113 (183)
T KOG3325|consen 65 --------------------ENLKYPE-NKVVTVGQFKIGLCHGHQVIPWG-----DPESLALLAR----QLDVDILLT 113 (183)
T ss_pred --------------------ccccCCc-cceEEeccEEEEeecCcEeecCC-----CHHHHHHHHH----hcCCcEEEe
Confidence 1222222 36889999999999997543322 1233333332 247999997
No 116
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=95.67 E-value=0.027 Score=58.93 Aligned_cols=74 Identities=18% Similarity=0.279 Sum_probs=46.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhh----cCCC--cEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKS----AGPF--DAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k----~Gpf--D~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
..+.|+||+||++.+|.+-++.+.-. .|.+ .-+|++||+..-++...+-+.-++.-....|--+|++-||||..
T Consensus 48 ~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~ 127 (311)
T cd07419 48 APIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDR 127 (311)
T ss_pred CCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchH
Confidence 35899999999999988766554311 1111 24789999976444333333322221234566799999999963
No 117
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=95.55 E-value=0.37 Score=52.98 Aligned_cols=90 Identities=10% Similarity=0.118 Sum_probs=49.1
Q ss_pred cCeEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHH
Q 008383 116 HGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELV 194 (567)
Q Consensus 116 ~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~-~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~ 194 (567)
+|++|..|--.... ......+.+++++-|++ |+.....-=|+++|.+|..+.........+. ........+.+++
T Consensus 300 ggvrfIvLDSt~~~-G~~~G~L~eeQL~WLeqeLa~a~~k~VVVf~HHPp~s~g~~~~Dp~~pg---~~~~n~~eLldLL 375 (496)
T TIGR03767 300 GGVRGISMDTTNRA-GGDEGSLGQTQFKWIKDTLRASSDTLFVLFSHHTSWSMVNELTDPVDPG---EKRHLGTELVSLL 375 (496)
T ss_pred CCEEEEEEeCCCcC-CCcCCccCHHHHHHHHHHHhcCCCCCEEEEECCCCcccccccccccccc---ccccCHHHHHHHH
Confidence 45666666443221 11234567888888876 3333344568889988765422111000010 0112345677777
Q ss_pred HHh-CCCEEEEccCCC
Q 008383 195 AEI-KPRYHIAGSKGV 209 (567)
Q Consensus 195 ~~l-kPRYhf~Gh~~~ 209 (567)
+.. +-+.+|+||.|.
T Consensus 376 ~~ypnV~aVfsGHvH~ 391 (496)
T TIGR03767 376 LEHPNVLAWVNGHTHS 391 (496)
T ss_pred hcCCCceEEEECCcCC
Confidence 776 677899999664
No 118
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=95.48 E-value=0.031 Score=53.08 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHHHH-hcccCCCCccEEEEccCCCC
Q 008383 18 QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFMNY-VEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 18 ~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~~~-l~g~~~~p~ptyfv~GN~~~ 76 (567)
+.++++.++-.+. +.|.||++||++...... ..+.... +.......+++|+|.||||.
T Consensus 28 ~~~~~l~~~~~~~-~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~ 87 (172)
T cd07391 28 DTLERLDRLIEEY-GPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDG 87 (172)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCcc
Confidence 4556666665555 479999999998532111 1111111 11124567899999999984
No 119
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=95.31 E-value=0.35 Score=50.67 Aligned_cols=119 Identities=13% Similarity=-0.012 Sum_probs=61.8
Q ss_pred CEEEEEcCCCCCHH------HHHHHHHHHHhh---cCCCcEEEEecCCCCCChhh------------HHHHHHHhcccCC
Q 008383 4 PRILLCGDVLGRLN------QLFKRVQSVNKS---AGPFDAVLCVGQFFPDSSEL------------LDEFMNYVEGRSE 62 (567)
Q Consensus 4 ~KILv~GDvhG~~~------~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~~~------------~~~~~~~l~g~~~ 62 (567)
++||.+.|+||++. .+-..++++.++ .++--++|-+||+|....-. -.-..+++ ..
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~m---N~ 77 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILIL---NA 77 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHH---hc
Confidence 47999999999853 333334444332 14446999999987532100 00111222 22
Q ss_pred CCccEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeC-----------------------CCCeEEEcC
Q 008383 63 IPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-----------------------GSGNFTLHG 117 (567)
Q Consensus 63 ~p~ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-----------------------~~gv~~~~G 117 (567)
+.+- +.+.||||..- +.+..+-..... .....-..++.|+.+-+ ..-|++.+|
T Consensus 78 ~g~D-a~tlGNHEFD~G~~~L~~~~~~~~~-~~~a~fp~l~aNv~~~~~~~~~~~~~~~~~~~~~~~~~~~py~I~e~~G 155 (313)
T cd08162 78 LGVQ-AIALGNHEFDLGTDELADLIRPSAA-GGGAAFPYLSANLDFSGDANLAGLATADGQQAAAIAGKIAKSTVVEVGG 155 (313)
T ss_pred cCCc-EEeccccccccCHHHHHHHHHhhcc-cccCCCCEEEecccccCCcccccccccccccccccccccCCeEEEEECC
Confidence 2222 57789999652 222222111000 00001236778876432 223446799
Q ss_pred eEEEEEeccc
Q 008383 118 LSVAYLSGRQ 127 (567)
Q Consensus 118 lrIa~lgG~~ 127 (567)
+|||.+|-.-
T Consensus 156 ~kIGviGltt 165 (313)
T cd08162 156 EKIGVVGATT 165 (313)
T ss_pred EEEEEEEecc
Confidence 9999998763
No 120
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.084 Score=53.27 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=113.4
Q ss_pred CCEEEEEcCCC--CCHHHHH--HHHHHHHhhcCCCcEEEEecCCCCC-------ChhhHHHHHHHhcccCCCCccEEEEc
Q 008383 3 PPRILLCGDVL--GRLNQLF--KRVQSVNKSAGPFDAVLCVGQFFPD-------SSELLDEFMNYVEGRSEIPIPTYFIG 71 (567)
Q Consensus 3 ~~KILv~GDvh--G~~~~l~--~kv~~l~~k~GpfD~vi~~GDff~~-------~~~~~~~~~~~l~g~~~~p~ptyfv~ 71 (567)
..++||+||.- |.+.+-. ..+.+|.+|. ..|+||-+||=|-. ++.-.+.|+..++. ..+-.|-|-|.
T Consensus 43 slsflvvGDwGr~g~~nqs~va~qmg~ige~l-~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~-pSLQkpWy~vl 120 (336)
T KOG2679|consen 43 SLSFLVVGDWGRRGSFNQSQVALQMGEIGEKL-DIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTA-PSLQKPWYSVL 120 (336)
T ss_pred ceEEEEEcccccCCchhHHHHHHHHHhHHHhc-cceEEEecCCcccccCCCCCCChhHHhhhhhcccC-cccccchhhhc
Confidence 46899999974 5454432 2234455555 49999999994321 22233456666653 44667999999
Q ss_pred cCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEe--cccCCC--CCCCC------CCCHHH
Q 008383 72 DYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLS--GRQSSE--GQQFG------TYSQDD 141 (567)
Q Consensus 72 GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lg--G~~~~~--~~~~~------~~t~~d 141 (567)
||||---.+.++|+.-= ...+..|+|+..+|.. ..++++-+.-+..+. -..... ...|. .|....
T Consensus 121 GNHDyrGnV~AQls~~l----~~~d~RW~c~rsf~~~-ae~ve~f~v~~~~f~~d~~~~~~~~~ydw~~v~PR~~~~~~~ 195 (336)
T KOG2679|consen 121 GNHDYRGNVEAQLSPVL----RKIDKRWICPRSFYVD-AEIVEMFFVDTTPFMDDTFTLCTDDVYDWRGVLPRVKYLRAL 195 (336)
T ss_pred cCccccCchhhhhhHHH----HhhccceecccHHhhc-ceeeeeeccccccchhhheecccccccccccCChHHHHHHHH
Confidence 99984433434332000 0134679999998887 455554332222221 110101 01111 122222
Q ss_pred HHHHHH-hhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCC
Q 008383 142 VDALRA-LAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVD 220 (567)
Q Consensus 142 v~~L~~-~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~ 220 (567)
...|+. +.+....--|++-|-+-+.+..+++. ..-.+.+.-|+++.+-...++||.|+- |- .- .
T Consensus 196 l~~le~~L~~S~a~wkiVvGHh~i~S~~~HG~T----------~eL~~~LlPiL~~n~VdlY~nGHDHcL-Qh---is-~ 260 (336)
T KOG2679|consen 196 LSWLEVALKASRAKWKIVVGHHPIKSAGHHGPT----------KELEKQLLPILEANGVDLYINGHDHCL-QH---IS-S 260 (336)
T ss_pred HHHHHHHHHHhhcceEEEecccceehhhccCCh----------HHHHHHHHHHHHhcCCcEEEecchhhh-hh---cc-C
Confidence 222221 22223456678888777766555442 112346778889999999999996541 10 01 1
Q ss_pred CcceeEEEEccC
Q 008383 221 AVHVTRFLGLAP 232 (567)
Q Consensus 221 ~~~~TRFI~L~~ 232 (567)
....+-|+--|.
T Consensus 261 ~e~~iqf~tSGa 272 (336)
T KOG2679|consen 261 PESGIQFVTSGA 272 (336)
T ss_pred CCCCeeEEeeCC
Confidence 255678886553
No 121
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=95.03 E-value=0.03 Score=53.29 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCCChhh-HHHHHH----HhcccC-C----CCccEEEEccCCC
Q 008383 19 LFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL-LDEFMN----YVEGRS-E----IPIPTYFIGDYGV 75 (567)
Q Consensus 19 l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~-~~~~~~----~l~g~~-~----~p~ptyfv~GN~~ 75 (567)
+.+++..+..+. +.|+||++||+|...... ..++.+ +..... . ..+|+|+|+||||
T Consensus 33 ~~~~~~~~i~~~-~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD 98 (171)
T cd07384 33 MRRAFKTALQRL-KPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHD 98 (171)
T ss_pred HHHHHHHHHHhc-CCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccc
Confidence 444555555444 579999999998753211 112222 211111 1 2689999999997
No 122
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.99 E-value=0.057 Score=59.01 Aligned_cols=75 Identities=20% Similarity=0.317 Sum_probs=51.0
Q ss_pred CCEEEEEcCCCC------------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-------hhHH------------
Q 008383 3 PPRILLCGDVLG------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-------ELLD------------ 51 (567)
Q Consensus 3 ~~KILv~GDvhG------------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-------~~~~------------ 51 (567)
.+||||..|.|- .|..+ +.|=.|... ...|+||.-||+|..+. ...+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tF-eEIl~iA~e-~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~ 90 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTF-EEILEIAQE-NDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPV 90 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHH-HHHHHHHHh-cCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCce
Confidence 489999999995 23333 333333333 36999999999998631 0111
Q ss_pred -----------------HHHHHhcccCCCCccEEEEccCCCChHH
Q 008383 52 -----------------EFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (567)
Q Consensus 52 -----------------~~~~~l~g~~~~p~ptyfv~GN~~~~~~ 79 (567)
....|.+....+.+|++=|.|||+++..
T Consensus 91 ~le~lSD~s~~f~~~~f~~VNY~DpNlNIsIPVFsIHGNHDDpSG 135 (646)
T KOG2310|consen 91 QLEILSDQSVNFGNSVFGNVNYEDPNLNISIPVFSIHGNHDDPSG 135 (646)
T ss_pred eeEEecccceeccccccceecccCCCcceeeeeEEeecCCCCCcc
Confidence 1124666778899999999999999853
No 123
>PF02744 GalP_UDP_tr_C: Galactose-1-phosphate uridyl transferase, C-terminal domain; InterPro: IPR005850 Galactose-1-phosphate uridyl transferase catalyses the conversion of UDP-glucose and alpha-D-galactose 1-phosphate to alpha-D-glucose 1-phosphate and UDP-galactose during galactose metabolism. The enzyme is present in prokaryotes and eukaryotes. Defects in GalT in humans is the cause of galactosemia, an inherited disorder of galactose metabolism that leads to jaundice, cataracts and mental retardation. This domain describes the C-terminal of Galactose-1-phosphate uridyl transferase. SCOP reports fold duplication of the C-terminal with the N-terminal domain. Both are involved in Zn and Fe binding; GO: 0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity, 0006012 galactose metabolic process; PDB: 1GUP_C 1HXP_A 1HXQ_A 1GUQ_C.
Probab=94.64 E-value=0.05 Score=51.64 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=44.8
Q ss_pred CCCccccCC--CCCCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 008383 389 KECWFCLSS--PSVESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (567)
Q Consensus 389 ~~C~FC~~~--~~~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~ 460 (567)
..|.||-.- ...+...||+.++++-++.|--.--|--++|+|.+|..++.++++++..++-...+.+...+.
T Consensus 13 Gs~L~~D~~~~E~~~~~Riv~en~~f~a~vP~~a~wP~ev~ilpkrh~~~l~~l~~~E~~dlA~~l~~i~~r~d 86 (166)
T PF02744_consen 13 GSCLFCDHLQMELAEGERIVYENEHFVAFVPFAARWPFEVWILPKRHVPSLADLTDEERDDLAAILKPILRRYD 86 (166)
T ss_dssp SS-HHHHHHHHHHHH-TTEEEE-SSEEEE--TT--STT-EEEEESS--SSGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHhhcCCCEEEEECCceEEEEECcccCCcEEEEecCCChhhHHHhhhHHHhhHHHHHHHHHHHhc
Confidence 479999642 223456799999987777776667788999999999999999999977777766555555544
No 124
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=94.64 E-value=0.064 Score=53.63 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=47.8
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
+-||||+||+|+.+.+.. ++... +|----|..||+..-++...+.+.-++.=+.+.|--+-++.||||.
T Consensus 62 vtvcGDvHGqf~dl~ELf-kiGG~-~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEs 130 (319)
T KOG0371|consen 62 VTVCGDVHGQFHDLIELF-KIGGL-APDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHES 130 (319)
T ss_pred eEEecCcchhHHHHHHHH-HccCC-CCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHH
Confidence 789999999999998766 44433 2445567889997765554444444443334556669999999984
No 125
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=94.57 E-value=0.056 Score=50.64 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=27.2
Q ss_pred CCcEEEEecCCCCCChh-hHHHH----HHHhcccC-CCCccEEEEccCCC
Q 008383 32 PFDAVLCVGQFFPDSSE-LLDEF----MNYVEGRS-EIPIPTYFIGDYGV 75 (567)
Q Consensus 32 pfD~vi~~GDff~~~~~-~~~~~----~~~l~g~~-~~p~ptyfv~GN~~ 75 (567)
+.|+||++||++..... ...++ ..+..-.. ..++|+|+|.||||
T Consensus 38 ~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD 87 (156)
T cd08165 38 QPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHD 87 (156)
T ss_pred CCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCC
Confidence 47999999999875321 11122 22221111 13689999999997
No 126
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=93.83 E-value=3.4 Score=48.54 Aligned_cols=42 Identities=19% Similarity=0.132 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCC
Q 008383 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPD 45 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~ 45 (567)
.++||.+.|+||++.. +-..|+++.+++ +--++|-.||++..
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~-~ntlllD~GD~iqG 96 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEA-KNSVLFDDGDALQG 96 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhC-CCeEEEECCCCCCC
Confidence 3689999999998632 222333333333 44699999998653
No 127
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=93.38 E-value=4.6 Score=49.87 Aligned_cols=206 Identities=13% Similarity=0.076 Sum_probs=100.6
Q ss_pred CEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHH------------HH
Q 008383 4 PRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEF------------MN 55 (567)
Q Consensus 4 ~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~------------~~ 55 (567)
++||.++|+||++. ++...++++.+++ +--++|-.||++....- .++ +.
T Consensus 42 l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~-~n~llld~GD~~qGs~l--~~~~~~~~~~~~~~~~~ 118 (1163)
T PRK09419 42 IQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKEN-PNTLLVDNGDLIQGNPL--GEYAVKDNILFKNKTHP 118 (1163)
T ss_pred EEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhC-CCeEEEeCCCccCCChh--hhHHhhhccccCCCcCH
Confidence 68999999999863 3334444444443 32355559998764321 000 00
Q ss_pred HhcccCCCCccEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeC------CCCeEEE---------cCe
Q 008383 56 YVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK------GSGNFTL---------HGL 118 (567)
Q Consensus 56 ~l~g~~~~p~ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg------~~gv~~~---------~Gl 118 (567)
.+.....+.. -+++.||||..- +.+..+-.. ..-..||.|++.-. ..-|++. +|+
T Consensus 119 ~i~~mN~lgy-Da~~lGNHEFd~G~~~L~~~~~~-------a~fp~l~aNv~~~~~~~~~~py~I~~~~~~~~~g~~~gv 190 (1163)
T PRK09419 119 MIKAMNALGY-DAGTLGNHEFNYGLDFLDGTIKG-------ANFPVLNANVKYKNGKNVYTPYKIKEKTVTDENGKKQGV 190 (1163)
T ss_pred HHHHHhhcCc-cEEeecccccccCHHHHHHHHhc-------CCCCEEEeeeecCCCCcccCCEEEEEEEeeccCCCCCCe
Confidence 1110122222 267789999642 222222111 12346888885432 2234456 899
Q ss_pred EEEEEecccCCCCC-----CC--CCCCHHHHHHHHHhhc--CCCCcc--EEEeCCCCccccccccccccccccCCCCCC-
Q 008383 119 SVAYLSGRQSSEGQ-----QF--GTYSQDDVDALRALAE--EPGIVD--LFLTNEWPSGVTNKAAASDMLVGISDSSNT- 186 (567)
Q Consensus 119 rIa~lgG~~~~~~~-----~~--~~~t~~dv~~L~~~~~--~~~~vD--ILLTh~wP~gI~~~~~~~~~~~~~~~~~~G- 186 (567)
|||.+|=.-+.-.. .. ..|+ +.++++++... ...++| |+|+|.--..- . . ..|
T Consensus 191 kIgiiG~~~p~~~~~~~~~~~g~~~~~-d~v~~~~~~v~~lk~~gaDvII~l~H~G~~~~--~-~-----------~~~~ 255 (1163)
T PRK09419 191 KVGYIGFVPPQIMTWDKKNLKGKVEVK-NIVEEANKTIPEMKKGGADVIVALAHSGIESE--Y-Q-----------SSGA 255 (1163)
T ss_pred EEEEEecCCcchhhcchhhccCcEEEC-CHHHHHHHHHHHHHhcCCCEEEEEeccCcCCC--C-C-----------CCCc
Confidence 99999876321110 00 1222 12333322110 024566 57788542210 0 0 112
Q ss_pred cHHHHHHHHHh-CCCEEEEccCCCccccccccCC-------CCcceeEEEEccCCCC
Q 008383 187 DSTVSELVAEI-KPRYHIAGSKGVFYAREPYSNV-------DAVHVTRFLGLAPVGN 235 (567)
Q Consensus 187 s~~i~~l~~~l-kPRYhf~Gh~~~fyEr~Py~~~-------~~~~~TRFI~L~~~g~ 235 (567)
...+.+|++++ .--..+.||.|..+....|... .....|-.+-.|..|+
T Consensus 256 en~~~~la~~~~gID~Il~GHsH~~~~~~~~~~~~~~~~~~~~i~g~~ivqag~~g~ 312 (1163)
T PRK09419 256 EDSVYDLAEKTKGIDAIVAGHQHGLFPGADYKGVPQFDNAKGTINGIPVVMPKSWGK 312 (1163)
T ss_pred chHHHHHHHhCCCCcEEEeCCCcccccCcccccccccccccceECCEEEEccChhhc
Confidence 22455677554 4668999999887753333211 0123455555565554
No 128
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.18 E-value=0.38 Score=47.96 Aligned_cols=79 Identities=14% Similarity=0.105 Sum_probs=48.2
Q ss_pred CCcEEEEecCCCCC----C---hhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHhccccccCcccCCceecccE
Q 008383 32 PFDAVLCVGQFFPD----S---SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNL 104 (567)
Q Consensus 32 pfD~vi~~GDff~~----~---~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl 104 (567)
..|.|+++||+|.. + +...+...+++. ...-+.++||++|||| .++.+.... -+-++
T Consensus 29 ~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~-~a~~G~~v~~i~GN~D---fll~~~f~~------------~~g~~ 92 (237)
T COG2908 29 QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLR-LARKGTRVYYIHGNHD---FLLGKRFAQ------------EAGGM 92 (237)
T ss_pred cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHH-HHhcCCeEEEecCchH---HHHHHHHHh------------hcCce
Confidence 35999999999763 1 111111222221 2445789999999997 334332210 12345
Q ss_pred EEeCCCCeEEEcCeEEEEEecc
Q 008383 105 FWLKGSGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 105 ~~Lg~~gv~~~~GlrIa~lgG~ 126 (567)
..+.+.-+.+..|.++.-+=|-
T Consensus 93 ~l~~~~~~~~l~g~~~Ll~HGD 114 (237)
T COG2908 93 TLLPDPIVLDLYGKRILLAHGD 114 (237)
T ss_pred EEcCcceeeeecCcEEEEEeCC
Confidence 6666666667889999988885
No 129
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=92.80 E-value=0.25 Score=50.98 Aligned_cols=72 Identities=8% Similarity=0.135 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCCCHHH--HHHHHHHHHhhcCCCcEEEEecCCCCC-ChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 3 PPRILLCGDVLGRLNQ--LFKRVQSVNKSAGPFDAVLCVGQFFPD-SSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~--l~~kv~~l~~k~GpfD~vi~~GDff~~-~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
..||+.++|.|-..-. ..+.+.++-... | |+|+..||++.- .......+...+.. .+.+.++|++.||||-.
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~-~-DlivltGD~~~~~~~~~~~~~~~~L~~-L~~~~gv~av~GNHd~~ 118 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANEL-P-DLIVLTGDYVDGDRPPGVAALALFLAK-LKAPLGVFAVLGNHDYG 118 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcC-C-CEEEEEeeeecCCCCCCHHHHHHHHHh-hhccCCEEEEecccccc
Confidence 3589999999987443 222233333333 4 999999999873 33334455555543 45789999999999743
No 130
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=92.19 E-value=2.1 Score=43.65 Aligned_cols=185 Identities=12% Similarity=0.105 Sum_probs=89.0
Q ss_pred CcEEEEecCCCCCC---------------------hhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHHHHhcccccc
Q 008383 33 FDAVLCVGQFFPDS---------------------SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQ 91 (567)
Q Consensus 33 fD~vi~~GDff~~~---------------------~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~ 91 (567)
+.-||++||..... ....+++..||+. ..-.+|+.++|||||-....+..-+.-..
T Consensus 43 I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~l~~-l~~~i~V~imPG~~Dp~~~~lPQqplh~~-- 119 (257)
T cd07387 43 IVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAVKELDNFLSQ-LASSVPVDLMPGEFDPANHSLPQQPLHRC-- 119 (257)
T ss_pred eEEEEEECCcccccccccchhhhhhccccccchhhHHHHHHHHHHHHh-hhcCCeEEECCCCCCcccccCCCCCCCHH--
Confidence 44699999986531 1123456666654 23468999999999743222111000000
Q ss_pred CcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccc
Q 008383 92 GFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKA 171 (567)
Q Consensus 92 ~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~ 171 (567)
=|.. +. --.|+..+..-..++++|++|.+.+|....+-..-..+ ++.++.|+... .+ =|-.|..=...
T Consensus 120 lfp~-s~-~~~~~~~vtNP~~~~i~g~~vLgtsGqni~Di~ky~~~-~~~l~~me~~L--~w------rHlaPTaPDTL- 187 (257)
T cd07387 120 LFPK-SS-NYSTLNLVTNPYEFSIDGVRVLGTSGQNVDDILKYSSL-ESRLDILERTL--KW------RHIAPTAPDTL- 187 (257)
T ss_pred Hhhc-cc-ccCCcEEeCCCeEEEECCEEEEEECCCCHHHHHHhCCC-CCHHHHHHHHH--Hh------cccCCCCCCcc-
Confidence 0000 00 01356666554566789999999999743111000011 12233333211 00 12222110000
Q ss_pred cccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccccccccCCCCcceeEEEEccCCCCcccceeEEEeccC
Q 008383 172 AASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYAREPYSNVDAVHVTRFLGLAPVGNKEKQKFIHALSPT 248 (567)
Q Consensus 172 ~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyEr~Py~~~~~~~~TRFI~L~~~g~~~K~Kw~yAf~i~ 248 (567)
...|- ..-+-++-.--|...|+||.+.|--+. |.+. ....+|.|++..|-. -.-+--+++.
T Consensus 188 --~~yP~---------~~~Dpfvi~~~PhVyf~Gnq~~f~t~~-~~~~-~~~~v~lv~vP~Fs~---t~~~vlvdl~ 248 (257)
T cd07387 188 --WCYPF---------TDRDPFILEECPHVYFAGNQPKFGTKL-VEGE-EGQRVLLVCVPSFSK---TGTAVLVNLR 248 (257)
T ss_pred --ccccC---------CCCCceeecCCCCEEEeCCCcceeeeE-EEcC-CCCeEEEEEeCCcCc---CCEEEEEECC
Confidence 00000 000111223359999999987663333 4443 356799999999943 2334444443
No 131
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=92.09 E-value=2.7 Score=45.86 Aligned_cols=189 Identities=17% Similarity=0.075 Sum_probs=92.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCC-CChh--hHHHHHHHhcccCCCCccEEEEccCCCChHH
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFP-DSSE--LLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK 79 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~-~~~~--~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~ 79 (567)
+.++.++||.--..... ....+...+.++|+||.+|||-= .... .-++|...+.- ...-+|..++.||||....
T Consensus 147 ~~~~~i~GDlG~~~~~~--s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp-~As~vPymv~~GNHE~d~~ 223 (452)
T KOG1378|consen 147 PTRAAIFGDMGCTEPYT--STLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEP-IASYVPYMVCSGNHEIDWP 223 (452)
T ss_pred ceeEEEEcccccccccc--chHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhh-hhccCceEEecccccccCC
Confidence 45788999965432210 11222334446999999999932 2111 23344444432 3356899999999985421
Q ss_pred H---HHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHH-hhcCC---
Q 008383 80 V---LLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRA-LAEEP--- 152 (567)
Q Consensus 80 ~---~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~-~~~~~--- 152 (567)
- +.... ... .....+.+--.|++|- +..++..|.+||--... ....++++. +-|+. |++..
T Consensus 224 ~~~~F~~y~-~Rf--~mP~~~s~s~~~l~YS-----fd~G~vhfv~lsse~~~---~~~~~~~QY-~WL~~dL~~v~r~~ 291 (452)
T KOG1378|consen 224 PQPCFVPYS-ARF--NMPGNSSESDSNLYYS-----FDVGGVHFVVLSTETYY---NFLKGTAQY-QWLERDLASVDRKK 291 (452)
T ss_pred Ccccccccc-eee--ccCCCcCCCCCceeEE-----EeeccEEEEEEeccccc---cccccchHH-HHHHHHHHHhcccC
Confidence 0 00000 000 0000001112246653 34667788877532211 111222221 12221 22111
Q ss_pred CCccEEEeCCCCccccccccccccccccCCCCCCc--HHHHHHHHHhCCCEEEEccCCCccccc
Q 008383 153 GIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTD--STVSELVAEIKPRYHIAGSKGVFYARE 214 (567)
Q Consensus 153 ~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs--~~i~~l~~~lkPRYhf~Gh~~~fyEr~ 214 (567)
.+=-|.+-|-|=..-....- ..+ ....+ ..+.+|.-+.+-...|+||.|. |||.
T Consensus 292 tPWlIv~~HrP~Y~S~~~~~---~re----G~~~~~~~~LE~l~~~~~VDvvf~GHvH~-YER~ 347 (452)
T KOG1378|consen 292 TPWLIVQGHRPMYCSSNDAH---YRE----GEFESMREGLEPLFVKYKVDVVFWGHVHR-YERF 347 (452)
T ss_pred CCeEEEEecccceecCCchh---hcc----CcchhhHHHHHHHHHHhceeEEEecccee-hhcc
Confidence 34456666654433221000 001 11112 3799999999999999999885 5873
No 132
>KOG2958 consensus Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=91.55 E-value=0.33 Score=49.34 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=50.7
Q ss_pred CCcceEEEECCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 008383 400 VESHLIVSVGEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYK 460 (567)
Q Consensus 400 ~~~hliis~g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~ 460 (567)
.+|+.||-++++..+..|=-.+-|--+||||.+|+.++.++++-+..+|....+.|..-|.
T Consensus 212 l~Kervv~enehfivvvPywA~wPfEtllipk~h~~~~~~l~~~~k~dLasiLK~ll~Kyd 272 (354)
T KOG2958|consen 212 LEKERVVVENEHFIVVVPYWATWPFETLLIPKRHVSRFHELDEVEKVDLASILKLLLIKYD 272 (354)
T ss_pred hhhceEEeecCceEEEeehhhcCcceeeeechhhhhhhcccchHHHhhHHHHHHHHHHHHH
Confidence 5789999999998888887777788899999999999999999888877776666554444
No 133
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=91.33 E-value=0.46 Score=46.55 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCC
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
-|-||||+||.|-.|.+..+. .| |=---|..|||..-++-.++.|.-++.-..+-|-.+-.+-||||.
T Consensus 47 PVTvCGDIHGQFyDL~eLFrt----gG~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEs 116 (306)
T KOG0373|consen 47 PVTVCGDIHGQFYDLLELFRT----GGQVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHES 116 (306)
T ss_pred CeeEeeccchhHHHHHHHHHh----cCCCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchh
Confidence 478999999999888765443 23 444567899998776655666666655446677778899999985
No 134
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=91.25 E-value=0.37 Score=48.05 Aligned_cols=68 Identities=18% Similarity=0.356 Sum_probs=47.5
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcC--CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAG--PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~G--pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
|-||||+||.|..|.+..+ ..| |--=-|.+||+..-+....+.+.-++.=+..-|--+-.+-||||..
T Consensus 45 vtvcGDIHGQf~Dllelf~----igG~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsR 114 (303)
T KOG0372|consen 45 VTVCGDIHGQFYDLLELFR----IGGDVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESR 114 (303)
T ss_pred cEEeecccchHHHHHHHHH----hCCCCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhh
Confidence 7899999999998876443 223 3455788999977655445555544443355677789999999853
No 135
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=90.53 E-value=0.36 Score=46.93 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCcEEEEecCCCCCChhhHHHHHHHhccc------CC----------------CCccEEEEccCCC
Q 008383 32 PFDAVLCVGQFFPDSSELLDEFMNYVEGR------SE----------------IPIPTYFIGDYGV 75 (567)
Q Consensus 32 pfD~vi~~GDff~~~~~~~~~~~~~l~g~------~~----------------~p~ptyfv~GN~~ 75 (567)
..|.|+++||+|+..-...++|.+++... .. -.+|++.|+||||
T Consensus 44 ~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~i~V~GNHD 109 (193)
T cd08164 44 KPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPLINIAGNHD 109 (193)
T ss_pred CCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceEEEECCccc
Confidence 46999999999975322233444332210 10 1488999999997
No 136
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=89.94 E-value=0.55 Score=51.51 Aligned_cols=102 Identities=23% Similarity=0.449 Sum_probs=62.9
Q ss_pred cCCCCcccceeEEEeccCCCCCCccccccCCCCCCcCCCCccccCCCCcccccCCCCCCCCCCcccccccccccccCCCC
Q 008383 231 APVGNKEKQKFIHALSPTPAATMSAADISMKTPNTTLSPYTFLDQGSHSKEAAKRPSDSVSDSQYWRYDVSQKRQKHGGG 310 (567)
Q Consensus 231 ~~~g~~~K~Kw~yAf~i~p~~~~~~~~l~~~p~~~t~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (567)
|.|+.++- -||+|.|.|=+.- .=-+=|+|||..+. +..++|.+ ..|. |.
T Consensus 187 ~~ys~DeF--rMy~fKir~C~R~-------~shDwteCPf~Hpg-----EkARRRDP-----Rkyh-Ys----------- 235 (528)
T KOG1595|consen 187 GIYSSDEF--RMYSFKIRRCSRP-------RSHDWTECPFAHPG-----EKARRRDP-----RKYH-YS----------- 235 (528)
T ss_pred ccccccce--EEEeeeecccCCc-------cCCCcccCCccCCC-----cccccCCc-----cccc-cc-----------
Confidence 77877554 6999999987642 23588999997531 11122211 1111 11
Q ss_pred CCCCcceeeeccCCCCCCCcccccCCc----hhhhhhccccchhhhccccCCCCCCcccccccC
Q 008383 311 DGDKMCFKFIYSGSCPRGEKCNFRHDT----DAREQCLRGVCLDFIIKGKCEKGPECSYKHSLQ 370 (567)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 370 (567)
.-+|=.|+. |+|.+|+.|+|||-- .+.+.|-.+.|-|- |.|.+ +=|.+.|..+
T Consensus 236 --~tpCPefrk-G~C~rGD~CEyaHgvfEcwLHPa~YRT~~CkDg---~~C~R-rvCfFAH~~e 292 (528)
T KOG1595|consen 236 --STPCPEFRK-GSCERGDSCEYAHGVFECWLHPARYRTRKCKDG---GYCPR-RVCFFAHSPE 292 (528)
T ss_pred --CccCccccc-CCCCCCCccccccceehhhcCHHHhccccccCC---CCCcc-ceEeeecChH
Confidence 014555554 889999999999974 46677878888442 55554 5566666544
No 137
>cd00608 GalT Galactose-1-phosphate uridyl transferase (GalT): This enzyme plays a key role in galactose metabolism by catalysing the transfer of a uridine 5'-phosphoryl group from UDP-galactose 1-phosphate. The structure of E.coli GalT reveals that the enzyme contains two identical subunits. It also demonstrates that the active site is formed by amino acid residues from both subunits of the dimer.
Probab=89.81 E-value=4.2 Score=42.91 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=38.3
Q ss_pred eEEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEEecC---C-CCCeeEEEEee
Q 008383 425 HVLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWLS---K-RGTHANLQAVP 485 (567)
Q Consensus 425 H~LIiP~~H~~s~~~~~~~~~~E~~~-~~~~L~~~~~~~g~-~~v~~E~~~---~-~~~H~hi~~vP 485 (567)
=++|-.-.|..++.+++.+.+.++.. +++.+.++.+..+. -+.+||+.. + ...|-|.|++-
T Consensus 95 eVii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~~~yv~if~N~G~~aGaSl~HpH~Qi~a 161 (329)
T cd00608 95 EVICFSPDHNLTLAEMSVAEIREVVEAWAERTRELGKNPRIKYVQIFENKGAEMGASLPHPHGQIWA 161 (329)
T ss_pred EEEEECCcccCChhhCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeecCcccccCCCCCCeeeee
Confidence 35677889999999999887666654 45555555443333 355677221 2 24688888764
No 138
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=89.40 E-value=0.99 Score=45.12 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=43.6
Q ss_pred CEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCCC---h----hhHHHHHHHhccc
Q 008383 4 PRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPDS---S----ELLDEFMNYVEGR 60 (567)
Q Consensus 4 ~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~~---~----~~~~~~~~~l~g~ 60 (567)
-+.||+.|+|=-+.. +.+++.++-.+.+ .+.||++||++-.- . .....|.+++.+.
T Consensus 20 ~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~-p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~~~~~ 98 (235)
T COG1407 20 GRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYG-PKRLIILGDLKHEFGKSLRQEKEEVREFLELLDER 98 (235)
T ss_pred CcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcC-CCEEEEcCccccccCccccccHHHHHHHHHHhccC
Confidence 368999999965444 4455655555665 69999999995531 1 1222344444321
Q ss_pred CCCCccEEEEccCCCC
Q 008383 61 SEIPIPTYFIGDYGVG 76 (567)
Q Consensus 61 ~~~p~ptyfv~GN~~~ 76 (567)
-+++|.||||.
T Consensus 99 -----evi~i~GNHD~ 109 (235)
T COG1407 99 -----EVIIIRGNHDN 109 (235)
T ss_pred -----cEEEEeccCCC
Confidence 48999999984
No 139
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=89.33 E-value=4.4 Score=46.60 Aligned_cols=113 Identities=12% Similarity=-0.098 Sum_probs=60.9
Q ss_pred CCEEEEEcCCCCCHHH----------------HHHHHHHHHhhcCCCcEEEEecCCCCCChhhH------------HHHH
Q 008383 3 PPRILLCGDVLGRLNQ----------------LFKRVQSVNKSAGPFDAVLCVGQFFPDSSELL------------DEFM 54 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~----------------l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~------------~~~~ 54 (567)
.++||.+.|+||++.. +...++++.+++ +--++|-.||++....-.. .-+.
T Consensus 2 ~l~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~ 80 (626)
T TIGR01390 2 DLRIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEV-KNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVY 80 (626)
T ss_pred eEEEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhC-CCeEEEECCCcCCCccchhhhhhccccCCCcChHH
Confidence 4689999999999742 333344443333 3469999999876421100 0011
Q ss_pred HHhcccCCCCccEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeC-------CCCeEEE-----c----
Q 008383 55 NYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H---- 116 (567)
Q Consensus 55 ~~l~g~~~~p~ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~-----~---- 116 (567)
+.+ ..++.- ..+.||||..- +.+..+-.. ..-..||.|++... ..-|++. +
T Consensus 81 ~~m---N~lgyD-a~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~aNv~~~~~~~~~~~py~I~~~~~~~~~G~~~ 149 (626)
T TIGR01390 81 KAM---NLLKYD-VGNLGNHEFNYGLPFLKQAIAA-------AKFPIVNANVVDAGTGQPAFTPYLIQERSVVDTDGKPH 149 (626)
T ss_pred HHH---hhcCcc-EEecccccccccHHHHHHHHHh-------CCCCEEEEEEEeCCCCCcccCCeEEEEEEeeccCCCcc
Confidence 111 222222 57789999652 222222111 12346888886532 1223333 2
Q ss_pred CeEEEEEeccc
Q 008383 117 GLSVAYLSGRQ 127 (567)
Q Consensus 117 GlrIa~lgG~~ 127 (567)
|+|||.+|=.-
T Consensus 150 ~~kIGiIG~~~ 160 (626)
T TIGR01390 150 TLKVGYIGFVP 160 (626)
T ss_pred ceEEEEEEecC
Confidence 69999998753
No 140
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=88.93 E-value=0.8 Score=42.74 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=45.9
Q ss_pred CCCCEEEEEcCCCCC------------HHHHHH-HHHHHHhhcCCCcEEEEecCCCCCCh--hhHHHHHHHhcccCCCCc
Q 008383 1 MSPPRILLCGDVLGR------------LNQLFK-RVQSVNKSAGPFDAVLCVGQFFPDSS--ELLDEFMNYVEGRSEIPI 65 (567)
Q Consensus 1 M~~~KILv~GDvhG~------------~~~l~~-kv~~l~~k~GpfD~vi~~GDff~~~~--~~~~~~~~~l~g~~~~p~ 65 (567)
|+..+|.++||.|=. ++..-+ -++.+++--+|=|.|-.+|||-.... .+...+++.|.|
T Consensus 1 ~sm~mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerLnG------ 74 (186)
T COG4186 1 ASMTMMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERLNG------ 74 (186)
T ss_pred CceeEEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHcCC------
Confidence 555689999999842 222221 25556666679999999999965432 333455555555
Q ss_pred cEEEEccCCC
Q 008383 66 PTYFIGDYGV 75 (567)
Q Consensus 66 ptyfv~GN~~ 75 (567)
-..+|+|||+
T Consensus 75 rkhlv~GNhD 84 (186)
T COG4186 75 RKHLVPGNHD 84 (186)
T ss_pred cEEEeeCCCC
Confidence 3478999997
No 141
>COG4360 APA2 ATP adenylyltransferase (5',5'''-P-1,P-4-tetraphosphate phosphorylase II) [Nucleotide transport and metabolism]
Probab=88.41 E-value=0.71 Score=45.73 Aligned_cols=72 Identities=24% Similarity=0.350 Sum_probs=42.2
Q ss_pred CCEEE-EEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCceEEEE--ecCCC-CCeeEEEEe
Q 008383 409 GEYYY-CALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQAV 484 (567)
Q Consensus 409 g~~~y-l~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~hi~~v 484 (567)
++..| +.+.|.|+++-|.|||-.+--..-..++.. .|..+..-+-..+| .|||. -.++. ..|-|+|+|
T Consensus 90 ~s~th~~llNKF~VVdeHlLiVTrefedQ~s~LTl~------Df~ta~~vL~~ldg--lvFYNsGp~aGaSq~HkHLQi~ 161 (298)
T COG4360 90 ISDTHKLLLNKFPVVDEHLLIVTREFEDQESALTLA------DFTTAYAVLCGLDG--LVFYNSGPIAGASQDHKHLQIV 161 (298)
T ss_pred CchhHhhhhhcCCcccceeEEeehhhhhccccCCHH------HHHHHHHHHhcccc--eEEecCCCCcCcCCCccceeEe
Confidence 34466 456899999999999987533322223322 12221111111233 78887 12222 479999999
Q ss_pred ecCc
Q 008383 485 PIPT 488 (567)
Q Consensus 485 Pvp~ 488 (567)
|.|.
T Consensus 162 pmPf 165 (298)
T COG4360 162 PMPF 165 (298)
T ss_pred eccc
Confidence 9994
No 142
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=88.40 E-value=0.9 Score=49.64 Aligned_cols=60 Identities=18% Similarity=0.313 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh-hhHHHHHHHhccc-------------------------CCCCccEEE
Q 008383 16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS-ELLDEFMNYVEGR-------------------------SEIPIPTYF 69 (567)
Q Consensus 16 ~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~-~~~~~~~~~l~g~-------------------------~~~p~ptyf 69 (567)
+++++.+|++|+.+. |||++|.+||.....+ .++.=+.+.|+|. ....+|.|.
T Consensus 84 ~~AaVqtvNal~~~~-p~df~is~GD~~nn~~~nElrWyidvldG~~I~p~SG~~~~~e~v~~~~p~~a~GL~~~iPWY~ 162 (492)
T TIGR03768 84 LDAAVQTVNDLHKRD-RFDFGISLGDACNSTQYNELRWYIDVLDGKPITPSSGAHAGADTIDYQKPFQAAGLDKSIPWYQ 162 (492)
T ss_pred HHHHHHHHHHhhcCC-CceEEEeccccccchhHHHHHHHHHHhcCCeeccCCCCCCCccCCCCCCcccccccCCCCceEE
Confidence 566777777776544 9999999999976532 1122222334442 112389999
Q ss_pred EccCCCC
Q 008383 70 IGDYGVG 76 (567)
Q Consensus 70 v~GN~~~ 76 (567)
+.||||.
T Consensus 163 v~GNHD~ 169 (492)
T TIGR03768 163 VLGNHDH 169 (492)
T ss_pred eecCCcc
Confidence 9999974
No 143
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=88.10 E-value=0.54 Score=49.56 Aligned_cols=206 Identities=13% Similarity=0.186 Sum_probs=104.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHH-----
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK----- 79 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~----- 79 (567)
-|.++||+||++..|...+....... |=.-.+.+||...-+....+.+.-+++=....|--++.+-||||...-
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~p-p~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG 138 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSFP-PDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG 138 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCCC-CcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence 48999999999999886555443121 457788999985543332222222222235677778999999996521
Q ss_pred HHHHHhccccccCcccCCceec-c-cEEEeCCCCeEEEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhc-CCC--C
Q 008383 80 VLLAASKNSANQGFKMDGFKVT-D-NLFWLKGSGNFTLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAE-EPG--I 154 (567)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~i~-~-Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~-~~~--~ 154 (567)
++++... ... ....|-+ . ..-+|.-.. .+++ +|..+=|..++.-. +.++++.+..-.. ... -
T Consensus 139 FydE~~r-r~~----~~~~w~~F~~~f~~mp~~a--~i~~-kI~CmhGGlsp~l~-----~~~~i~~i~rp~~~~~~gll 205 (331)
T KOG0374|consen 139 FYDECKR-RYG----EIKLWKAFNDAFNCLPLAA--LIDG-KILCMHGGLSPHLK-----SLDQIRAIPRPTDSPDKGLL 205 (331)
T ss_pred eHHHHHH-hcc----hHHHHHHHHHHHhhCchhh--eecc-eEEEecCCCChhhc-----ChHHHhhccCCcCCCcccee
Confidence 1222110 000 0000000 0 011111111 1233 33333333222111 2344544442110 011 2
Q ss_pred ccEEEeCCCC--ccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccC--CCccccccccCCCCcceeEEEEc
Q 008383 155 VDLFLTNEWP--SGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSK--GVFYAREPYSNVDAVHVTRFLGL 230 (567)
Q Consensus 155 vDILLTh~wP--~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~--~~fyEr~Py~~~~~~~~TRFI~L 230 (567)
.|+|-++.=. .|..... .++. ...|..+++++++++.=...+=+|. ...||. | . +..-+|-|-+.
T Consensus 206 ~DLlWsdp~~~~~g~~~n~------Rg~s-~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyef--f-a-~r~lvTIFSAP 274 (331)
T KOG0374|consen 206 CDLLWSDPDDDVPGWEEND------RGVS-FTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEF--F-A-GRKLVTIFSAP 274 (331)
T ss_pred eeeeecCCCCCCCCcccCC------Ccee-eEecHHHHHHHHHHhCcceEEEcCccccccceE--e-c-CceEEEEecCc
Confidence 4554332111 1111111 1222 2478999999999999999999993 345553 2 2 25679999988
Q ss_pred cCCCC
Q 008383 231 APVGN 235 (567)
Q Consensus 231 ~~~g~ 235 (567)
.=+|.
T Consensus 275 ~Ycg~ 279 (331)
T KOG0374|consen 275 NYCGE 279 (331)
T ss_pred hhccc
Confidence 88876
No 144
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=87.88 E-value=1.2 Score=48.07 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=32.6
Q ss_pred CCCcEEEEecCCCCCChh-hHHHHHHHhccc-----CCCCccEEEEccCCCC
Q 008383 31 GPFDAVLCVGQFFPDSSE-LLDEFMNYVEGR-----SEIPIPTYFIGDYGVG 76 (567)
Q Consensus 31 GpfD~vi~~GDff~~~~~-~~~~~~~~l~g~-----~~~p~ptyfv~GN~~~ 76 (567)
...|+++.+||+|..+.. ..+||.+++... .+..+++..++||||-
T Consensus 92 lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~~k~~~~~~~i~GNhDI 143 (410)
T KOG3662|consen 92 LKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFGRKGNIKVIYIAGNHDI 143 (410)
T ss_pred cCCCEEEEeccccccCccCChHHHHHHHHHHHHhhCCCCCCeeEEeCCcccc
Confidence 467999999999985332 244666655432 2357899999999984
No 145
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=87.83 E-value=31 Score=34.30 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=51.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCcEEEEecCC------C-CC-Ch---hhHHHHHHHhcccCCCCccEEEEccCCCChHH---
Q 008383 14 GRLNQLFKRVQSVNKSAGPFDAVLCVGQF------F-PD-SS---ELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAK--- 79 (567)
Q Consensus 14 G~~~~l~~kv~~l~~k~GpfD~vi~~GDf------f-~~-~~---~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~--- 79 (567)
.+++.+|+.+..+-+. .|++++=-.. . .. .. ....+..+.+ ..+++-..-+++||+..-.
T Consensus 22 ~~~~~~~~~v~~~~~~---~D~~~~NlE~~~~~~~~~~~~~~~~f~~~~~~~~~L---~~~G~d~~tlaNNH~fD~G~~g 95 (239)
T cd07381 22 YDFDPLFEDVKPLLRA---ADLAIGNLETPLTDKGSPAPSKYPHFRAPPEVADAL---KAAGFDVVSLANNHTLDYGEEG 95 (239)
T ss_pred CCchhHHHHHHHHHhc---CCEEEEEeecCccCCCCcCCCCceEecCCHHHHHHH---HHhCCCEEEcccccccccchHH
Confidence 3577888888887764 4777543221 1 00 00 0122333333 4567777778889986521
Q ss_pred HHHHHhccccccCcccCCceecccEEEeC---------CCCeEEEcCeEEEEEecccCC
Q 008383 80 VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQSS 129 (567)
Q Consensus 80 ~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~~ 129 (567)
+.+.+.... ..|+.++| +.-+++++|++|+.+|-....
T Consensus 96 l~~t~~~l~------------~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~ 142 (239)
T cd07381 96 LLDTLDALD------------EAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGT 142 (239)
T ss_pred HHHHHHHHH------------HcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCC
Confidence 222221000 12233332 223446899999999987543
No 146
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=86.79 E-value=35 Score=33.94 Aligned_cols=106 Identities=11% Similarity=0.095 Sum_probs=57.7
Q ss_pred EEEEEcCCC-------CCHHHHHHHHHHHHhhcCCCcEEEEe------cCC--CCCC-h---hhHHHHHHHhcccCCCCc
Q 008383 5 RILLCGDVL-------GRLNQLFKRVQSVNKSAGPFDAVLCV------GQF--FPDS-S---ELLDEFMNYVEGRSEIPI 65 (567)
Q Consensus 5 KILv~GDvh-------G~~~~l~~kv~~l~~k~GpfD~vi~~------GDf--f~~~-~---~~~~~~~~~l~g~~~~p~ 65 (567)
+|+++||+- .+++.+|+.+..+-++ .|++++= ++- .... + ....++.+.+ ..+++
T Consensus 1 ~i~~~GDi~~~~~~~~~~~~~~~~~v~~~~~~---aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l---~~~G~ 74 (239)
T smart00854 1 TLSFVGDVMLGRGVYKADFSPPFAGVKPLLRA---ADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAAL---KAAGF 74 (239)
T ss_pred CEEEEeeecccCcccccCcchHHHHHHHHHhc---CCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHH---HHhCC
Confidence 478888872 3478888888887654 4766653 111 1100 0 1112333333 55677
Q ss_pred cEEEEccCCCChHH---HHHHHhccccccCcccCCceecccEEEeC---------CCCeEEEcCeEEEEEecccC
Q 008383 66 PTYFIGDYGVGAAK---VLLAASKNSANQGFKMDGFKVTDNLFWLK---------GSGNFTLHGLSVAYLSGRQS 128 (567)
Q Consensus 66 ptyfv~GN~~~~~~---~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg---------~~gv~~~~GlrIa~lgG~~~ 128 (567)
-+.-+++||+..-. +.+.+.... ..|+.++| +.-+++++|++||.+|-+..
T Consensus 75 d~~~laNNH~fD~G~~gl~~t~~~l~------------~a~i~~~g~~~~~~~~~~~~i~~~~g~kIg~ig~t~~ 137 (239)
T smart00854 75 DVVSLANNHSLDYGEEGLLDTLAALD------------AAGIAHVGAGRNLAEARKPAIVEVKGIKIALLAYTYG 137 (239)
T ss_pred CEEEeccCcccccchHHHHHHHHHHH------------HCCCCEeeCCCChHHhhCcEEEEECCEEEEEEEEEcC
Confidence 77788889986522 222221100 12333333 12344678999999997754
No 147
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=85.85 E-value=5.8 Score=39.84 Aligned_cols=106 Identities=16% Similarity=0.169 Sum_probs=60.7
Q ss_pred CEEEEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh
Q 008383 4 PRILLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA 77 (567)
Q Consensus 4 ~KILv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~ 77 (567)
||||++||+-|+ .+.+.+.+..+..|- +.|++|+=|.. |+...+ ...+++ +.++- +++.|||-=.
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~ky-k~dfvI~N~ENaa~G~Git~k---~y~~l~----~~G~d-viT~GNH~wd 71 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKY-KIDFVIVNGENAAGGFGITEK---IYKELL----EAGAD-VITLGNHTWD 71 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhh-cCcEEEEcCccccCCcCCCHH---HHHHHH----HhCCC-EEeccccccc
Confidence 799999999997 677888888887775 47999999986 333322 233333 23333 5677887422
Q ss_pred -HHHHHHHhccccccCcccCCceecccEEEeCC-CCeEEEcCeEEEEEe
Q 008383 78 -AKVLLAASKNSANQGFKMDGFKVTDNLFWLKG-SGNFTLHGLSVAYLS 124 (567)
Q Consensus 78 -~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~-~gv~~~~GlrIa~lg 124 (567)
.++++-+..... -..-.. .|+. ..|+ +++++.+|.+|+.+.
T Consensus 72 ~~ei~~~i~~~~~----ilRP~N-~p~~-~~G~G~~~f~~ng~ki~V~N 114 (266)
T COG1692 72 QKEILDFIDNADR----ILRPAN-YPDG-TPGKGSRIFKINGKKLAVIN 114 (266)
T ss_pred chHHHHHhhcccc----eeccCC-CCCC-CCcceEEEEEeCCcEEEEEE
Confidence 334444421100 000000 1121 3444 345677887777654
No 148
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=85.71 E-value=6.2 Score=45.63 Aligned_cols=113 Identities=12% Similarity=-0.010 Sum_probs=61.0
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHH-----------
Q 008383 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMN----------- 55 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~----------- 55 (567)
.++||.+.|+||++. ++-..++++.+++ +--++|-.||++....- .++..
T Consensus 25 ~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~-~n~llvD~GD~~qGsp~--~~~~~~~~~~~g~~~p 101 (649)
T PRK09420 25 DLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEA-KNSVLVDNGDLIQGSPL--GDYMAAKGLKAGDVHP 101 (649)
T ss_pred eEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhC-CCEEEEECCCcCCCchh--hhhhhhccccCCCcch
Confidence 578999999999863 2333344443333 34689999998764321 11110
Q ss_pred HhcccCCCCccEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeC-------CCCeEEE-----c----C
Q 008383 56 YVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLK-------GSGNFTL-----H----G 117 (567)
Q Consensus 56 ~l~g~~~~p~ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg-------~~gv~~~-----~----G 117 (567)
.+.-...++. -..+.||||..- +.+..+-.. ..-..||.|++... ..-|++. + |
T Consensus 102 ~i~amN~lgy-Da~tlGNHEFd~G~~~L~~~~~~-------a~fP~l~ANv~~~~~~~~~~~py~I~e~~v~~~~G~~~~ 173 (649)
T PRK09420 102 VYKAMNTLDY-DVGNLGNHEFNYGLDYLKKALAG-------AKFPYVNANVIDAKTGKPLFTPYLIKEKEVKDKDGKEHT 173 (649)
T ss_pred HHHHHHhcCC-cEEeccchhhhcCHHHHHHHHhc-------CCCCEEEEEEEecCCCCcccCCeEEEEEEeeccCCCccc
Confidence 0000011222 367889999652 233322111 12347888887432 1223333 3 5
Q ss_pred eEEEEEecc
Q 008383 118 LSVAYLSGR 126 (567)
Q Consensus 118 lrIa~lgG~ 126 (567)
+|||.+|=.
T Consensus 174 vkIGiIGl~ 182 (649)
T PRK09420 174 IKIGYIGFV 182 (649)
T ss_pred eEEEEEEec
Confidence 999999854
No 149
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=85.46 E-value=3.3 Score=48.89 Aligned_cols=112 Identities=13% Similarity=-0.027 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCHH----------------HHHHHHHHHHhhcCCCcEEEEecCCCCCChhh----------HHH---H
Q 008383 3 PPRILLCGDVLGRLN----------------QLFKRVQSVNKSAGPFDAVLCVGQFFPDSSEL----------LDE---F 53 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----------------~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~----------~~~---~ 53 (567)
.++||.+.|+||++. ++-..|+++.+++ +--++|-.||++....-. .++ .
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~-~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~ 193 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKEN-PNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPM 193 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhC-CCEEEEecCCCCCCCcccchhhhccccccCcchHH
Confidence 368999999999864 2333344443333 446899999986532100 000 1
Q ss_pred HHHhcccCCCCccEEEEccCCCChH--HHHHHHhccccccCcccCCceecccEEEeCC-------CCeEEE-----cC--
Q 008383 54 MNYVEGRSEIPIPTYFIGDYGVGAA--KVLLAASKNSANQGFKMDGFKVTDNLFWLKG-------SGNFTL-----HG-- 117 (567)
Q Consensus 54 ~~~l~g~~~~p~ptyfv~GN~~~~~--~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~-------~gv~~~-----~G-- 117 (567)
.+.+ ..++.- ..+.||||..- +.+..+-.. ..-..||.|++.... .-|++. +|
T Consensus 194 i~am---N~LGyD-A~tLGNHEFDyG~d~L~~~l~~-------a~fPvl~ANV~~~~~~~~~~~PY~I~e~~~~d~~G~~ 262 (814)
T PRK11907 194 YAAL---EALGFD-AGTLGNHEFNYGLDYLEKVIAT-------ANMPIVNANVLDPTTGDFLYTPYTIVTKTFTDTEGKK 262 (814)
T ss_pred HHHH---hccCCC-EEEechhhcccCHHHHHHHHHh-------CCCCEEEeeeeecCCCCccCCCeEEEEEEEecCCCcc
Confidence 1121 223332 57889999652 233322111 123468888875432 223333 55
Q ss_pred --eEEEEEecc
Q 008383 118 --LSVAYLSGR 126 (567)
Q Consensus 118 --lrIa~lgG~ 126 (567)
+||+++|=.
T Consensus 263 ~~vKIGiIGlv 273 (814)
T PRK11907 263 VTLNIGITGIV 273 (814)
T ss_pred cceEEEEEEeC
Confidence 999999854
No 150
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=81.99 E-value=3.4 Score=40.14 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=53.2
Q ss_pred EEEEcCCCCC-HHHHHHHHHHHHhh---cCCCcEEEEecCCCCCCh------------hhHH-HHHHHhcccCCC--Ccc
Q 008383 6 ILLCGDVLGR-LNQLFKRVQSVNKS---AGPFDAVLCVGQFFPDSS------------ELLD-EFMNYVEGRSEI--PIP 66 (567)
Q Consensus 6 ILv~GDvhG~-~~~l~~kv~~l~~k---~GpfD~vi~~GDff~~~~------------~~~~-~~~~~l~g~~~~--p~p 66 (567)
|++++|.|-. =...++.+..+-.. ..+.+++|++|+|..... .... .+..+.+-..++ .+.
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5667776654 22234444444332 236799999999977411 1111 111222112333 478
Q ss_pred EEEEccCCCChHHHHHHHhccccccCcccC-Cceecc--cEEEeCCCCeEEEcCeEEEEEecc
Q 008383 67 TYFIGDYGVGAAKVLLAASKNSANQGFKMD-GFKVTD--NLFWLKGSGNFTLHGLSVAYLSGR 126 (567)
Q Consensus 67 tyfv~GN~~~~~~~~~~l~~~~~~~~~~~~-~~~i~~--Nl~~Lg~~gv~~~~GlrIa~lgG~ 126 (567)
+++|+|++|.... ..+++... ... -..+.. ++.++..=-.+.++|++|+..+|-
T Consensus 81 vvlvPg~~D~~~~--~~lPq~pl----~~~~~~~~~~~~~~~~~sNP~~~~i~~~~i~~~s~d 137 (209)
T PF04042_consen 81 VVLVPGPNDPTSS--PVLPQPPL----HSKLFPKLKKYSNIHFVSNPCRISINGQEIGVTSGD 137 (209)
T ss_dssp EEEE--TTCTT-S---SCSB--------TTTTCHHCTTTTEEE--CSEEEEETTEEEEE-SSH
T ss_pred EEEeCCCcccccc--CCCCCCCC----CHHHHhhhhhcCceEEeCCCeEEEEeCCcEEEECCc
Confidence 9999998875432 11211100 000 001122 277777666678999999988875
No 151
>PLN03103 GDP-L-galactose-hexose-1-phosphate guanyltransferase; Provisional
Probab=81.27 E-value=2.8 Score=45.10 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=40.3
Q ss_pred CEEEEEecCCCCCCCeEEEEec--cccCCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCceEEEEec-CC-CCCeeEEEEe
Q 008383 410 EYYYCALPKGPLVEDHVLVIPV--EHVPNTISTSPECEKELGRFQNSLMMYYKNQ-GKEAVFFEWL-SK-RGTHANLQAV 484 (567)
Q Consensus 410 ~~~yl~l~kgpl~~gH~LIiP~--~H~~s~~~~~~~~~~E~~~~~~~L~~~~~~~-g~~~v~~E~~-~~-~~~H~hi~~v 484 (567)
+...+++...|+.+||+||||- .|.+-..+. +.. .+ ++.-+.... ..-.|+|.-. +. ..-|+|+|..
T Consensus 169 s~~~VlINvsPI~~gH~LlvP~~~~~lPQ~i~~--~~l----~l--a~~~a~~~~~p~frvgYNSlGA~ASvNHLHFQa~ 240 (403)
T PLN03103 169 SPNVVAINVSPIEYGHVLLVPRVLDCLPQRIDP--DSF----LL--ALYMAAEANNPYFRVGYNSLGAFATINHLHFQAY 240 (403)
T ss_pred CccEEEEeCCCCccCeEEEcCCcccCCCeEecH--HHH----HH--HHHHHHhcCCCcEEEEecCCccccCcceeeeeec
Confidence 3346778899999999999964 677765542 222 11 111111112 2224667611 12 2469999987
Q ss_pred ecCc
Q 008383 485 PIPT 488 (567)
Q Consensus 485 Pvp~ 488 (567)
-.+.
T Consensus 241 yl~~ 244 (403)
T PLN03103 241 YLAN 244 (403)
T ss_pred ccCC
Confidence 6533
No 152
>PF05011 DBR1: Lariat debranching enzyme, C-terminal domain; InterPro: IPR007708 This presumed domain is found at the C terminus of lariat debranching enzyme. This domain is always found in association with a metallo-phosphoesterase domain IPR004843 from INTERPRO. RNA lariat debranching enzyme is capable of digesting a variety of branched nucleic acid substrates and multicopy single-stranded DNAs. The enzyme degrades intron lariat structures during splicing. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0006397 mRNA processing
Probab=80.06 E-value=1.7 Score=40.40 Aligned_cols=30 Identities=20% Similarity=0.442 Sum_probs=26.2
Q ss_pred CcceeEEEEccCCCCcccceeEEEeccCCCCC
Q 008383 221 AVHVTRFLGLAPVGNKEKQKFIHALSPTPAAT 252 (567)
Q Consensus 221 ~~~~TRFI~L~~~g~~~K~Kw~yAf~i~p~~~ 252 (567)
....|||++|++|+. +++||..+.|.+...
T Consensus 6 ~~~~TkFLALDKClP--~R~FLqviei~~~~~ 35 (145)
T PF05011_consen 6 TNKTTKFLALDKCLP--RRDFLQVIEIPPDSS 35 (145)
T ss_pred CCCccEEEeccccCC--CCcceEEEEecCCCC
Confidence 567899999999998 788999999987664
No 153
>PLN02643 ADP-glucose phosphorylase
Probab=79.50 E-value=27 Score=37.00 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=43.4
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCC-ceEEEEecC---C-CCCeeEEEEeec---Ccchhh---H
Q 008383 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGK-EAVFFEWLS---K-RGTHANLQAVPI---PTSKAA---A 493 (567)
Q Consensus 426 ~LIiP~~H~~s~~~~~~~~~~E~~~-~~~~L~~~~~~~g~-~~v~~E~~~---~-~~~H~hi~~vPv---p~~~~~---~ 493 (567)
++|-.-+|..++.+++.+.+..+.. +++.+..+.+..+. -+.+||+.+ + ...|-|-|++-. |..... .
T Consensus 110 Vii~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~~~i~yv~iF~N~G~~aGaSl~HPH~Qi~a~~~vP~~~~~el~~ 189 (336)
T PLN02643 110 VVIETPVHSVQLSDLPARHIGEVLKAYKKRINQLQSDSRFKYVQVFKNHGASAGASMSHSHSQIIALPVVPPSVSARLDG 189 (336)
T ss_pred EEEeCCccCCChHHCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeecCccCCcCCCCCceeeEecCcCChHHHHHHHH
Confidence 3455568999999999887666654 44555544333333 355677322 1 136888887643 444443 4
Q ss_pred HHHHHHH
Q 008383 494 VQDIFNL 500 (567)
Q Consensus 494 ~~~~F~~ 500 (567)
++.||++
T Consensus 190 ~~~y~~~ 196 (336)
T PLN02643 190 SKEYFEK 196 (336)
T ss_pred HHHHHHH
Confidence 4556554
No 154
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=75.50 E-value=19 Score=39.65 Aligned_cols=208 Identities=16% Similarity=0.208 Sum_probs=107.1
Q ss_pred CCEEEEEcCCCCCHH----HHHHHHHHHHhhcCCC------cEEEEecCCCCC-----C----------hhhHHHHHHHh
Q 008383 3 PPRILLCGDVLGRLN----QLFKRVQSVNKSAGPF------DAVLCVGQFFPD-----S----------SELLDEFMNYV 57 (567)
Q Consensus 3 ~~KILv~GDvhG~~~----~l~~kv~~l~~k~Gpf------D~vi~~GDff~~-----~----------~~~~~~~~~~l 57 (567)
..++++++|+|=--. ..|.+.-.+- +|+. ..++|+||.... + .+.-+++.+||
T Consensus 225 ~v~v~~isDih~GSk~F~~~~f~~fi~wl--~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L 302 (481)
T COG1311 225 RVYVALISDIHRGSKEFLEDEFEKFIDWL--NGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFL 302 (481)
T ss_pred ceEEEEEeeeecccHHHHHHHHHHHHHHh--cCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHH
Confidence 357999999997222 2222222221 4666 899999997441 1 11234566676
Q ss_pred cccCCCCccEEEEccCCCChHHHHHHHhccccccCcccCCceecccEEEeCCCCeEEEcCeEEEEEecccCCCC--CCCC
Q 008383 58 EGRSEIPIPTYFIGDYGVGAAKVLLAASKNSANQGFKMDGFKVTDNLFWLKGSGNFTLHGLSVAYLSGRQSSEG--QQFG 135 (567)
Q Consensus 58 ~g~~~~p~ptyfv~GN~~~~~~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg~~gv~~~~GlrIa~lgG~~~~~~--~~~~ 135 (567)
.- .---+.++++||||+..... +++.... . ....-....|+.+++.--.+.++|..+-+..|....+- .-+.
T Consensus 303 ~~-vp~~I~v~i~PGnhDa~r~a---~PQp~~~-~-~~kslf~~~n~~~v~NP~~~~l~G~~vL~~hG~sidDii~~vP~ 376 (481)
T COG1311 303 DQ-VPEHIKVFIMPGNHDAVRQA---LPQPHFP-E-LIKSLFSLNNLLFVSNPALVSLHGVDVLIYHGRSIDDIIKLVPG 376 (481)
T ss_pred hh-CCCCceEEEecCCCCccccc---cCCCCcc-h-hhcccccccceEecCCCcEEEECCEEEEEecCCCHHHHHhhCCC
Confidence 42 22345689999999854221 1111000 0 00111234568888777777899999999988732100 0000
Q ss_pred -CCC--HHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHHHHHhCCCEEEEccCCCccc
Q 008383 136 -TYS--QDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSELVAEIKPRYHIAGSKGVFYA 212 (567)
Q Consensus 136 -~~t--~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l~~~lkPRYhf~Gh~~~fyE 212 (567)
.|. -.-++.|.+. =|-.|.-= +.. | ..-. .-+-++-.-.|.+..+||.|.|.-
T Consensus 377 ~~~~~~~~ame~lLk~-----------rHlaPtyg---g~~---p------~aP~-~kD~lVIeevPDv~~~Ghvh~~g~ 432 (481)
T COG1311 377 ADYDSPLKAMEELLKR-----------RHLAPTYG---GTL---P------IAPE-TKDYLVIEEVPDVFHTGHVHKFGT 432 (481)
T ss_pred CCccchHHHHHHHHHh-----------cccCCCCC---Ccc---c------cccC-CcCceeeccCCcEEEEccccccce
Confidence 110 1112222222 12222100 000 0 0111 144556666899999999988754
Q ss_pred cccccCCCCcceeEEEEccCCCCcc-cceeEEEeccCCC
Q 008383 213 REPYSNVDAVHVTRFLGLAPVGNKE-KQKFIHALSPTPA 250 (567)
Q Consensus 213 r~Py~~~~~~~~TRFI~L~~~g~~~-K~Kw~yAf~i~p~ 250 (567)
.. | ..-+.||++.+-.-. .+| +.-++.+|.
T Consensus 433 ~~-y------~gv~~vns~T~q~qTefqk-~vni~p~~~ 463 (481)
T COG1311 433 GV-Y------EGVNLVNSGTWQEQTEFQK-MVNINPTPG 463 (481)
T ss_pred eE-E------eccceEEeeeecchhccce-EEEecCccc
Confidence 42 2 236788999887643 344 455554443
No 155
>COG1085 GalT Galactose-1-phosphate uridylyltransferase [Energy production and conversion]
Probab=75.38 E-value=18 Score=38.27 Aligned_cols=65 Identities=22% Similarity=0.212 Sum_probs=41.9
Q ss_pred CeEEEE--eccccCCCCCCCHHHHHHHHHH-HHHHHHHHHhcC-CceEEEEecC---C-CCCeeEEEEeecCc
Q 008383 424 DHVLVI--PVEHVPNTISTSPECEKELGRF-QNSLMMYYKNQG-KEAVFFEWLS---K-RGTHANLQAVPIPT 488 (567)
Q Consensus 424 gH~LIi--P~~H~~s~~~~~~~~~~E~~~~-~~~L~~~~~~~g-~~~v~~E~~~---~-~~~H~hi~~vPvp~ 488 (567)
|++.|| --+|..++.+++.+...++.++ ++..+++.+... +-|.+|++-+ + ...|-|.|++-.|.
T Consensus 93 g~~~VIvesp~H~~~l~~~~~~~~~~vv~~~~e~~~~L~~~~~~~yV~iF~N~Gk~~G~S~~HPH~Qi~a~~~ 165 (338)
T COG1085 93 GKSRVIVESPDHSKTLPELPVEEIEEVVKLWQERVRELYEREKYKYVQIFENKGKAAGASLPHPHGQIVALPV 165 (338)
T ss_pred cceEEEEECCcccCccccCCHHHHHHHHHHHHHHHHHHhhccCcceEEeeeccCcccCccCCCCCcceeeccc
Confidence 554444 5589999999998888887766 555556666532 2456677221 1 24688888876543
No 156
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=73.76 E-value=4.3 Score=42.71 Aligned_cols=66 Identities=20% Similarity=0.374 Sum_probs=38.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcCCC-cEEEEecCCCCCChhhHH---HHHHHhcccCCCCccEEEEccCCCC
Q 008383 5 RILLCGDVLGRLNQLFKRVQSVNKSAGPF-DAVLCVGQFFPDSSELLD---EFMNYVEGRSEIPIPTYFIGDYGVG 76 (567)
Q Consensus 5 KILv~GDvhG~~~~l~~kv~~l~~k~Gpf-D~vi~~GDff~~~~~~~~---~~~~~l~g~~~~p~ptyfv~GN~~~ 76 (567)
-|-||||+||.|-.|.+ +..+... |. ---+.+||...-++...+ -++.+ ....|...+.+-||||.
T Consensus 89 PiTVCGDIHGQf~DLmK-LFEVGG~--PA~t~YLFLGDYVDRGyFSiECvlYLwsL---Ki~yp~tl~lLRGNHEC 158 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMK-LFEVGGS--PANTRYLFLGDYVDRGYFSIECVLYLWSL---KINYPKTLFLLRGNHEC 158 (517)
T ss_pred CeeEecccchHHHHHHH-HHHccCC--cccceeEeeccccccceeeeehHHHHHHH---hcCCCCeEEEecCCcch
Confidence 37899999999877764 3333221 22 335678997554332121 23333 23445556777899985
No 157
>PRK11720 galactose-1-phosphate uridylyltransferase; Provisional
Probab=73.14 E-value=23 Score=37.77 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=35.9
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEEecCC----CCCeeEEEEee
Q 008383 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKEAVFFEWLSK----RGTHANLQAVP 485 (567)
Q Consensus 426 ~LIiP~~H~~s~~~~~~~~~~E~~~-~~~~L~~~~~~~g~~~v~~E~~~~----~~~H~hi~~vP 485 (567)
++|---+|..++.+++.+.+..+.. +++.+..+.+. =.-+.+||+.+. ...|-|-|++-
T Consensus 108 Viv~sp~H~~~l~~~~~~~i~~v~~~~~~r~~~l~~~-i~yv~iF~N~G~~~GaSl~HPH~Qi~a 171 (346)
T PRK11720 108 VICFSPDHSKTLPELSVAALREVVDTWQEQTAELGKT-YPWVQVFENKGAAMGCSNPHPHGQIWA 171 (346)
T ss_pred EEEECCCcCCChhHCCHHHHHHHHHHHHHHHHHHHhC-CcEEEEEeecCcccCcCCCCCceeeee
Confidence 4555678999999999876666554 44554444333 223556773221 13677777764
No 158
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=70.86 E-value=1.2 Score=47.75 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=46.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhhcC---CCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKSAG---PFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k~G---pfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
.-|-||||.||.++.|+- +--|+| +=.--+.-|||..-+....+.+.-++.--...|..++.--||||++.
T Consensus 165 ~qVTiCGDLHGklDDL~~----I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~m 238 (631)
T KOG0377|consen 165 QQVTICGDLHGKLDDLLV----ILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHM 238 (631)
T ss_pred cceEEeccccccccceEE----EEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHH
Confidence 358899999999998762 223555 22345678999765544444443333222456777888899999873
No 159
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=70.66 E-value=1.2e+02 Score=30.34 Aligned_cols=105 Identities=14% Similarity=0.246 Sum_probs=59.2
Q ss_pred EEEEEcCCC--C---------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCC---------C-h--hhHHHHHHHhcccC
Q 008383 5 RILLCGDVL--G---------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPD---------S-S--ELLDEFMNYVEGRS 61 (567)
Q Consensus 5 KILv~GDvh--G---------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~---------~-~--~~~~~~~~~l~g~~ 61 (567)
+|+++||+- . .++.+|+.+..+-++. |++ ++++..+ . . ....++.+.| .
T Consensus 1 ti~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~~a---D~~--~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L---~ 72 (250)
T PF09587_consen 1 TIAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQSA---DLV--VANLETPVTDSGQPASGYPHFNAPPEILDAL---K 72 (250)
T ss_pred CEEEEeccccCcchhhhcccCChHHHHHHHHHHHhhC---CEE--EEEeeecCcCCCCcCCCcceecCCHHHHHHH---H
Confidence 477888863 2 4567888888777653 754 4454221 0 0 1122333333 5
Q ss_pred CCCccEEEEccCCCChH---HHHHHHhccccccCcccCCceecccEEEeC--------C-CCeEEEcCeEEEEEecccCC
Q 008383 62 EIPIPTYFIGDYGVGAA---KVLLAASKNSANQGFKMDGFKVTDNLFWLK--------G-SGNFTLHGLSVAYLSGRQSS 129 (567)
Q Consensus 62 ~~p~ptyfv~GN~~~~~---~~~~~l~~~~~~~~~~~~~~~i~~Nl~~Lg--------~-~gv~~~~GlrIa~lgG~~~~ 129 (567)
.+++-++-+..||...- .+.+.+...+ ..+|.+.| + --+++++|++||.+|.....
T Consensus 73 ~~G~d~vslANNH~~D~G~~gl~~Tl~~L~------------~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~ 140 (250)
T PF09587_consen 73 DAGFDVVSLANNHIFDYGEEGLLDTLEALD------------KAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGE 140 (250)
T ss_pred HcCCCEEEecCCCCccccHHHHHHHHHHHH------------HCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCC
Confidence 57777888888997652 2333332100 13455555 1 13446899999999987543
No 160
>KOG0562 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=66.83 E-value=4.5 Score=38.01 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=41.7
Q ss_pred CEEEEEecCCCCCCCeEEEEec-cccCCCCCC---CHHHHHHHHHHHHHHHHHHHhcCCceEEEE--ecCCC-CCeeEEE
Q 008383 410 EYYYCALPKGPLVEDHVLVIPV-EHVPNTIST---SPECEKELGRFQNSLMMYYKNQGKEAVFFE--WLSKR-GTHANLQ 482 (567)
Q Consensus 410 ~~~yl~l~kgpl~~gH~LIiP~-~H~~s~~~~---~~~~~~E~~~~~~~L~~~~~~~g~~~v~~E--~~~~~-~~H~hi~ 482 (567)
+.+.++-++.|=..-|.||.|. .=++++... .-+..+||...-.++...+...+ ...+|- +-+.. ..|+|+|
T Consensus 23 d~vvvIrD~fPKa~~H~LvLpr~s~i~~l~~~~qe~l~ll~~~h~~~~~~v~~~~~~~-~~~~f~vG~HavPSM~~LHLH 101 (184)
T KOG0562|consen 23 DDVVVIRDKFPKARMHLLVLPRRSSIDSLFSVVQEHLSLLKEDHAVGPCWVDQLTNEA-LCNYFRVGFHAVPSMNNLHLH 101 (184)
T ss_pred ccEEEEcccCccceeEEEEecccchhHHHHHHHHHHhhHhHHHhhcCchHHHHhcchh-hhhheeeeeccCcchhheeEE
Confidence 4778888899999999999994 333333222 12234444444334444444321 112222 11222 3589999
Q ss_pred Eeec
Q 008383 483 AVPI 486 (567)
Q Consensus 483 ~vPv 486 (567)
||--
T Consensus 102 VISk 105 (184)
T KOG0562|consen 102 VISK 105 (184)
T ss_pred Eeec
Confidence 9874
No 161
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=64.94 E-value=2.1 Score=27.80 Aligned_cols=23 Identities=43% Similarity=1.125 Sum_probs=16.7
Q ss_pred cceeeeccCCCCCCCcccccCCc
Q 008383 315 MCFKFIYSGSCPRGEKCNFRHDT 337 (567)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~ 337 (567)
+|..|...|.|+.|+.|+|.|++
T Consensus 5 ~C~~f~~~g~C~~G~~C~f~H~~ 27 (27)
T PF00642_consen 5 LCRFFMRTGTCPFGDKCRFAHGE 27 (27)
T ss_dssp B-HHHHHTS--TTGGGSSSBSSG
T ss_pred cChhhccCCccCCCCCcCccCCC
Confidence 57778888999999999998863
No 162
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=62.95 E-value=21 Score=37.66 Aligned_cols=75 Identities=21% Similarity=0.146 Sum_probs=44.5
Q ss_pred CCEEEEEcCCCCCHH-----------------HH--HHHHHHHHhhcCCCcEEEEecCC-CCCCh-hhHHHHHHHhcccC
Q 008383 3 PPRILLCGDVLGRLN-----------------QL--FKRVQSVNKSAGPFDAVLCVGQF-FPDSS-ELLDEFMNYVEGRS 61 (567)
Q Consensus 3 ~~KILv~GDvhG~~~-----------------~l--~~kv~~l~~k~GpfD~vi~~GDf-f~~~~-~~~~~~~~~l~g~~ 61 (567)
+.|||.+.|.|=.+. .+ ..-++++.+.. +.|+|+..||. ++... ++...+.+-++=.+
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE-~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I 131 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASE-KPDLVVFTGDNIFGHSTQDAATSLMKAVAPAI 131 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhcc-CCCEEEEeCCcccccccHhHHHHHHHHhhhHh
Confidence 468999999985443 00 01233333333 46999999996 54321 22223333333234
Q ss_pred CCCccEEEEccCCCChH
Q 008383 62 EIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 62 ~~p~ptyfv~GN~~~~~ 78 (567)
.-.+|--.+.||||+..
T Consensus 132 ~~~IPwA~~lGNHDdes 148 (379)
T KOG1432|consen 132 DRKIPWAAVLGNHDDES 148 (379)
T ss_pred hcCCCeEEEeccccccc
Confidence 55788899999999764
No 163
>TIGR00209 galT_1 galactose-1-phosphate uridylyltransferase, family 1. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=61.52 E-value=56 Score=34.78 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=36.3
Q ss_pred EEEEeccccCCCCCCCHHHHHHHHH-HHHHHHHHHHhcCCceEEEEecCC----CCCeeEEEEeec
Q 008383 426 VLVIPVEHVPNTISTSPECEKELGR-FQNSLMMYYKNQGKEAVFFEWLSK----RGTHANLQAVPI 486 (567)
Q Consensus 426 ~LIiP~~H~~s~~~~~~~~~~E~~~-~~~~L~~~~~~~g~~~v~~E~~~~----~~~H~hi~~vPv 486 (567)
++|---+|..++.+++.+.+..+.. +++.+..+. +.=.-|.+||+.+. ...|-|-|++-.
T Consensus 108 Vii~sp~H~~~l~~m~~~~i~~v~~~~~~r~~~l~-~~i~yv~iF~N~G~~~GaSl~HPH~Qi~a~ 172 (347)
T TIGR00209 108 VICFSPDHSKTLPELSVAALTEIVKTWQEQTAELG-KTYPWVQIFENKGAAMGCSNPHPHGQIWAN 172 (347)
T ss_pred EEEeCCCccCChhHCCHHHHHHHHHHHHHHHHHHH-hCCcEEEEEeecCcccCcCCCCCceeeeeC
Confidence 4455668999999999876666554 455555444 22123567883222 136888887643
No 164
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=57.69 E-value=36 Score=31.44 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=31.9
Q ss_pred EEcCeEEEEEecccCCCCCCCCCCCHHHHHHHHHhhcCCCCccEEEeCCCCccccccccccccccccCCCCCCcHHHHHH
Q 008383 114 TLHGLSVAYLSGRQSSEGQQFGTYSQDDVDALRALAEEPGIVDLFLTNEWPSGVTNKAAASDMLVGISDSSNTDSTVSEL 193 (567)
Q Consensus 114 ~~~GlrIa~lgG~~~~~~~~~~~~t~~dv~~L~~~~~~~~~vDILLTh~wP~gI~~~~~~~~~~~~~~~~~~Gs~~i~~l 193 (567)
+.+|++|...|-... ..+.+.+..+ .++|||+..--- . ...+.+...++
T Consensus 102 ~~~g~~i~~~Gd~~~----------~~~~~~~~~~----~~vDvl~~p~~g-------~----------~~~~~~~a~~~ 150 (163)
T PF13483_consen 102 EVGGVTIYHAGDTGF----------PPDDEQLKQL----GKVDVLFLPVGG-------P----------FTMGPEEAAEL 150 (163)
T ss_dssp EETTEEEEE-TT--S-------------HHHHHHH-----S-SEEEEE--T-------T----------TS--HHHHHHH
T ss_pred EeCCCEEEEECCCcc----------CCCHHHHhcc----cCCCEEEecCCC-------C----------cccCHHHHHHH
Confidence 345666666554422 1223344443 579999864322 0 13567788899
Q ss_pred HHHhCCCEEEEcc
Q 008383 194 VAEIKPRYHIAGS 206 (567)
Q Consensus 194 ~~~lkPRYhf~Gh 206 (567)
+++++||+.+--|
T Consensus 151 ~~~l~pk~viP~H 163 (163)
T PF13483_consen 151 AERLKPKLVIPMH 163 (163)
T ss_dssp HHHCT-SEEEEES
T ss_pred HHHcCCCEEEeCC
Confidence 9999999987644
No 165
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=55.10 E-value=32 Score=27.86 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCC-CHHHHHHHHHHHHhhcCCCcEEEEecCC
Q 008383 3 PPRILLCGDVLG-RLNQLFKRVQSVNKSAGPFDAVLCVGQF 42 (567)
Q Consensus 3 ~~KILv~GDvhG-~~~~l~~kv~~l~~k~GpfD~vi~~GDf 42 (567)
-|||||+|.-.= +...++..+.++.++.+ +++|+.|.-
T Consensus 3 g~rVli~GgR~~~D~~~i~~~Ld~~~~~~~--~~~lvhGga 41 (71)
T PF10686_consen 3 GMRVLITGGRDWTDHELIWAALDKVHARHP--DMVLVHGGA 41 (71)
T ss_pred CCEEEEEECCccccHHHHHHHHHHHHHhCC--CEEEEECCC
Confidence 489999998554 67889999999988873 788888876
No 166
>smart00356 ZnF_C3H1 zinc finger.
Probab=53.33 E-value=9.7 Score=23.99 Aligned_cols=21 Identities=43% Similarity=1.116 Sum_probs=17.2
Q ss_pred cceeeeccCCCCCCCcccccCC
Q 008383 315 MCFKFIYSGSCPRGEKCNFRHD 336 (567)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (567)
+|..| ..|.|+.|..|+|.|.
T Consensus 6 ~C~~~-~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 6 LCKFF-KRGYCPYGDRCKFAHP 26 (27)
T ss_pred cCcCc-cCCCCCCCCCcCCCCc
Confidence 57667 7788999999998875
No 167
>KOG2720 consensus Predicted hydrolase (HIT family) [General function prediction only]
Probab=52.52 E-value=10 Score=39.67 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.5
Q ss_pred EEecCCCCCCCeEEEEecc
Q 008383 414 CALPKGPLVEDHVLVIPVE 432 (567)
Q Consensus 414 l~l~kgpl~~gH~LIiP~~ 432 (567)
|++.+.|+..||+||||.-
T Consensus 170 vaIN~sPie~~H~LiiP~V 188 (431)
T KOG2720|consen 170 VAINVSPIEYGHVLIIPRV 188 (431)
T ss_pred EEEecCccccCcEEEecch
Confidence 4566779999999999963
No 168
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=50.41 E-value=35 Score=34.60 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=38.8
Q ss_pred EEEcCCCCC--HHHHHHHHHHHHhhcCCCcEEEEecCC----CCCChhhHHHHHHHhcccCCCCccEEEEccCCCCh-HH
Q 008383 7 LLCGDVLGR--LNQLFKRVQSVNKSAGPFDAVLCVGQF----FPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGA-AK 79 (567)
Q Consensus 7 Lv~GDvhG~--~~~l~~kv~~l~~k~GpfD~vi~~GDf----f~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~-~~ 79 (567)
|++||+-|+ .+.+.+.+..|.++.+ +|+||+=|.= ++.....-++|.++ | +- .++.|||--. .+
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~-~DfVIaNgENaa~G~Git~~~~~~L~~~--G-----vD-viT~GNH~wdkke 71 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYG-IDFVIANGENAAGGFGITPKIAEELFKA--G-----VD-VITMGNHIWDKKE 71 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G--SEEEEE-TTTTTTSS--HHHHHHHHHH--T------S-EEE--TTTTSSTT
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcC-CCEEEECCcccCCCCCCCHHHHHHHHhc--C-----CC-EEecCcccccCcH
Confidence 789999997 6677788888887764 8999999985 33333322333333 2 22 5788998643 23
Q ss_pred HHHHHh
Q 008383 80 VLLAAS 85 (567)
Q Consensus 80 ~~~~l~ 85 (567)
+++.+.
T Consensus 72 i~~~i~ 77 (253)
T PF13277_consen 72 IFDFID 77 (253)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 169
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=37.01 E-value=1e+02 Score=34.98 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhhcCCCcEEEEecCCCCCCh------h---hHHHHHHHhcccCCCCccEEEEccCCCChH
Q 008383 16 LNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSS------E---LLDEFMNYVEGRSEIPIPTYFIGDYGVGAA 78 (567)
Q Consensus 16 ~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~------~---~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~ 78 (567)
...+-+.+..+.+-...+|+|+..||....+. . ....+.+.+.. .--++|+|...||||..+
T Consensus 194 ~~lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e-~FpdvpvypalGNhe~~P 264 (577)
T KOG3770|consen 194 KRLIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSE-YFPDVPVYPALGNHEIHP 264 (577)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHH-hCCCCceeeecccCCCCc
Confidence 44444455555443334999999999977531 1 11122222211 113789999999998764
No 170
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=34.07 E-value=1.2e+02 Score=29.42 Aligned_cols=53 Identities=17% Similarity=0.324 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHH-hcCC-ceEEEE-ecCCCCCeeEEEEeecCcchhhHHHHHH
Q 008383 446 KELGRFQNSLMMYYK-NQGK-EAVFFE-WLSKRGTHANLQAVPIPTSKAAAVQDIF 498 (567)
Q Consensus 446 ~E~~~~~~~L~~~~~-~~g~-~~v~~E-~~~~~~~H~hi~~vPvp~~~~~~~~~~F 498 (567)
+++.+|.+...+.|. .+|. .++..- ..-..++|+|+-+||+-.+.-...+.+|
T Consensus 98 e~~~~~~~~~~~~~~~r~g~~ni~~a~vH~DE~tPH~H~~~vP~~~~~rl~~k~~~ 153 (196)
T PF01076_consen 98 EQQKRWFEDSLEWLQERYGNENIVSAVVHLDETTPHMHFDVVPIDEDGRLSAKRLF 153 (196)
T ss_pred HHHHHHHHHHHHHHHHHCCchhEEEEEEECCCCCcceEEEEeecccccccchhhhh
Confidence 455666555555555 4664 333333 2223489999999999777433344444
No 171
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=30.45 E-value=2e+02 Score=31.69 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=35.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhh--cCCCcEEEEecCCCCC
Q 008383 4 PRILLCGDVLGRLNQLFKRVQSVNKS--AGPFDAVLCVGQFFPD 45 (567)
Q Consensus 4 ~KILv~GDvhG~~~~l~~kv~~l~~k--~GpfD~vi~~GDff~~ 45 (567)
.++.+++||+=+-.+++++++++-.+ .-|.-++|.+|.|.+.
T Consensus 283 ~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~ 326 (525)
T KOG3818|consen 283 TSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSS 326 (525)
T ss_pred ceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEecccccc
Confidence 46788899999999999999998775 3488999999999764
No 172
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=29.80 E-value=87 Score=28.50 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=35.9
Q ss_pred hcCCCcEEEEecCCCCCC-----hhhHHHHHHHhcccCCCCccEEEEccCCCChHHHHH
Q 008383 29 SAGPFDAVLCVGQFFPDS-----SELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVLL 82 (567)
Q Consensus 29 k~GpfD~vi~~GDff~~~-----~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~~ 82 (567)
+.|.||+|||.|=+...+ +-.....+.+++-..+..+|++|-.=.+++.++.+.
T Consensus 73 ~r~~~daVi~IGvlIkGsTmHfeyis~s~~hglm~~~~~sgvPvIfGlLTc~~eeQAL~ 131 (158)
T KOG3243|consen 73 KRGKFDAVICIGVLIKGSTMHFEYISNSAAHGLMSASINSGVPVIFGLLTCEDEEQALN 131 (158)
T ss_pred hccCceEEEEEEEEEecCchhHHHHHHHHHHHHhhhcccCCCCEEEEEeeeccHHHHHH
Confidence 456899999999875432 111223445555567889999998877776655444
No 173
>TIGR01239 galT_2 galactose-1-phosphate uridylyltransferase, family 2. This enzyme is involved in glucose and galactose interconversion. This model describes one of two extremely distantly related branches of the model pfam01087 from PFAM.
Probab=26.90 E-value=89 Score=34.49 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=55.8
Q ss_pred CCCCccccCCCC---------CCcceEEEE---CCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHH
Q 008383 388 SKECWFCLSSPS---------VESHLIVSV---GEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSL 455 (567)
Q Consensus 388 ~~~C~FC~~~~~---------~~~hliis~---g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L 455 (567)
=..|..|+.|.. ...|.||-+ |+..|+-...+.+-.-||+|+--+|.|= .++..++..|..|.+.+
T Consensus 168 YPkC~LC~ENeGY~Gr~nhPAR~NhRiI~~~L~ge~W~fQYSPY~YynEHcIvl~~~H~PM--kI~~~tF~~Ll~fv~~f 245 (489)
T TIGR01239 168 YPACQLCMENEGFEGSVNHPARSNHRIIRVILEDEQWGFQFSPYAYFPEHSIVLKGKHEPM--EISKKTFERLLSFLGKF 245 (489)
T ss_pred CCccchhccccCcCCCCCCCcccCceEEEEeeCCccceeeccchheecceeEEecCccCCc--EecHHHHHHHHHHHHhC
Confidence 358999998743 246777643 5566677777888899999999999983 46788999999888766
Q ss_pred HHHHHhcCC
Q 008383 456 MMYYKNQGK 464 (567)
Q Consensus 456 ~~~~~~~g~ 464 (567)
=-.|.-.+.
T Consensus 246 PhYFiGSNA 254 (489)
T TIGR01239 246 PHYFIGSNA 254 (489)
T ss_pred CccccccCC
Confidence 666654333
No 174
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=26.56 E-value=1.3e+02 Score=31.36 Aligned_cols=49 Identities=20% Similarity=0.322 Sum_probs=33.4
Q ss_pred cHHHHHHHHHh---CCCEEEEc----cCCCccccccccCCCCcceeEEE-EccCCCCcccceeEEEec
Q 008383 187 DSTVSELVAEI---KPRYHIAG----SKGVFYAREPYSNVDAVHVTRFL-GLAPVGNKEKQKFIHALS 246 (567)
Q Consensus 187 s~~i~~l~~~l---kPRYhf~G----h~~~fyEr~Py~~~~~~~~TRFI-~L~~~g~~~K~Kw~yAf~ 246 (567)
|..+++|-..+ .|||||+- |++.+.| -+-|| ++..+|..-|.|-+|+=.
T Consensus 217 ~~e~sdL~s~vP~d~prY~ff~~~ht~eGD~~e-----------s~~FIYS~P~~~~sVKeRMlYSSc 273 (342)
T KOG1747|consen 217 CTEPSDLPSRVPRDGPRYHFFLFKHTHEGDPLE-----------SIVFIYSMPGYGCSVKERMLYSSC 273 (342)
T ss_pred CCChHHhhhhcCCCCCceEEEecccccCCCCce-----------eEEEEEECCCCCcchhhhhHhhhc
Confidence 44566666655 69999988 5555533 47787 666668777888888643
No 175
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=25.80 E-value=2.2e+02 Score=29.56 Aligned_cols=43 Identities=12% Similarity=0.065 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhhc-C------CCcEEEEecCCCCC
Q 008383 3 PPRILLCGDVLGRLNQLFKRVQSVNKSA-G------PFDAVLCVGQFFPD 45 (567)
Q Consensus 3 ~~KILv~GDvhG~~~~l~~kv~~l~~k~-G------pfD~vi~~GDff~~ 45 (567)
..||.++||+|=+-...+++++++-.+- . ..-++|.+|+|.+.
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~ 76 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISL 76 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCC
Confidence 4689999999988777777777665542 1 24688999999653
No 176
>TIGR00672 cdh CDP-diacylglycerol pyrophosphatase, bacterial type. Alternate names for this enzyme include CDP-diglyceride hydrolase and CDP-diacylglycerol hydrolase.
Probab=25.09 E-value=2.1e+02 Score=29.06 Aligned_cols=97 Identities=18% Similarity=0.165 Sum_probs=59.3
Q ss_pred EEEEecCCCCCCCeEEEEeccccCCCCC------CCHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe--cCCCC-CeeEE
Q 008383 412 YYCALPKGPLVEDHVLVIPVEHVPNTIS------TSPECEKELGRFQNSLMMYYKNQ-GKEAVFFEW--LSKRG-THANL 481 (567)
Q Consensus 412 ~yl~l~kgpl~~gH~LIiP~~H~~s~~~------~~~~~~~E~~~~~~~L~~~~~~~-g~~~v~~E~--~~~~~-~H~hi 481 (567)
=|+.+ |.+--+-|.|+||...+.-+++ -.++-|.+-++-+..+.+.+.+- .-..+...+ ...|+ .|+||
T Consensus 62 gyvvl-KD~~Gp~qyLLmPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHI 140 (250)
T TIGR00672 62 GYVVL-KDLNGPLQYLLMPTYRINGTESPLLLDPSTPNFFWLAWQARDFMSKKYGQPIPDRAVSLAINSRTGRSQNHFHI 140 (250)
T ss_pred CeEEE-eCCCCCceeEEeeccccCCccChhhcCCCCccHHHHHHHHhHHHHHhcCCCCChhheeEEecCCCCccccccee
Confidence 34444 2233456999999999998886 24567777777777666665531 112344441 12233 45666
Q ss_pred EEeecCcchhhHHHHHHHHHHHHcCCcceecc
Q 008383 482 QAVPIPTSKAAAVQDIFNLAAEKLGFKFLATK 513 (567)
Q Consensus 482 ~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~ 513 (567)
|+=-+ -..+...+...+...+..|..++
T Consensus 141 HIsCl----rpdv~~~L~~~~~~i~~~W~~lp 168 (250)
T TIGR00672 141 HISCI----RPDVRKQLDNNLKKISSRWLPLP 168 (250)
T ss_pred eHhhC----CHHHHHHHHHhcccccCCceeCC
Confidence 55332 24567777777777888898766
No 177
>PRK05471 CDP-diacylglycerol pyrophosphatase; Provisional
Probab=24.83 E-value=2.1e+02 Score=29.02 Aligned_cols=97 Identities=13% Similarity=0.111 Sum_probs=59.9
Q ss_pred EEEEecCCCCCCCeEEEEeccccCCCCCC------CHHHHHHHHHHHHHHHHHHHhc-CCceEEEEe--cCCCC-CeeEE
Q 008383 412 YYCALPKGPLVEDHVLVIPVEHVPNTIST------SPECEKELGRFQNSLMMYYKNQ-GKEAVFFEW--LSKRG-THANL 481 (567)
Q Consensus 412 ~yl~l~kgpl~~gH~LIiP~~H~~s~~~~------~~~~~~E~~~~~~~L~~~~~~~-g~~~v~~E~--~~~~~-~H~hi 481 (567)
=|+.+ |.+--+-|.|+||...+.-+++- .+..|.+-+.-+..+.+.+.+- .-..+...+ ...|+ .|+||
T Consensus 63 gyvvl-KD~~Gp~qyLLiPt~rIsGIEsP~Ll~~~tpnyf~~AW~aR~~v~~~~g~pipd~~lsLaINS~~gRSQnQLHI 141 (252)
T PRK05471 63 GYVLL-KDRNGPLQYLLMPTYRISGIESPLLLEPSTPNYFALAWQARDFMSKKYGKPIPDSAVSLAINSRYGRTQDQLHI 141 (252)
T ss_pred CeEEE-ecCCCCcceEEeecccccCccCccccCCCCccHHHHHHHHhHHHHHhhCCCCChhheEEEecCCCCccccceee
Confidence 34444 23344569999999999988862 4567877777777666665531 223344441 12233 46666
Q ss_pred EEeecCcchhhHHHHHHHHHHHHcCCcceecc
Q 008383 482 QAVPIPTSKAAAVQDIFNLAAEKLGFKFLATK 513 (567)
Q Consensus 482 ~~vPvp~~~~~~~~~~F~~~~~~~~~~~~~~~ 513 (567)
|+--+ -..+...+...+...+..|..++
T Consensus 142 HIsCl----rp~v~~~L~~~~~~i~~~W~~lp 169 (252)
T PRK05471 142 HISCL----RPDVRAQLDNNLAAISSRWLPLP 169 (252)
T ss_pred ehhhC----CHHHHHHHHHhcccCCCCceeCC
Confidence 65433 24567777777777888898666
No 178
>KOG3969 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.25 E-value=1.3e+02 Score=30.84 Aligned_cols=89 Identities=20% Similarity=0.200 Sum_probs=54.9
Q ss_pred CCcceEEEECCE---EEEEec--C-CC--CCCCeEEEEe-ccccCCCCCCCHHHHHHHHHHHHHHHHHHH-hcCCc----
Q 008383 400 VESHLIVSVGEY---YYCALP--K-GP--LVEDHVLVIP-VEHVPNTISTSPECEKELGRFQNSLMMYYK-NQGKE---- 465 (567)
Q Consensus 400 ~~~hliis~g~~---~yl~l~--k-gp--l~~gH~LIiP-~~H~~s~~~~~~~~~~E~~~~~~~L~~~~~-~~g~~---- 465 (567)
.|...||++..+ -|+.+| | .+ +..=|+|.|= ..-+.|+.++..+-++=+.+..+..+.... .+|.+
T Consensus 157 aE~driV~ed~d~~nGFillPDlKWdgqtld~LyllaIvhr~dikSiRDL~~~h~~lL~n~r~k~~~~i~~~y~v~~dql 236 (310)
T KOG3969|consen 157 AEDDRIVYEDPDPENGFILLPDLKWDGQTLDSLYLLAIVHRRDIKSIRDLRPSHLQLLRNIRNKSREAIPQRYGVDPDQL 236 (310)
T ss_pred ccccceEEecCCCcCCeEEccccccCcccccceeEEEEEecCCcchhhhCCHHHHHHHHHHHHHHHHHHHHHhCCCchhE
Confidence 455566665433 357777 3 33 4455666443 344667888998888888888777766654 34443
Q ss_pred eEEEEecCCCC-CeeEEEEeecCcch
Q 008383 466 AVFFEWLSKRG-THANLQAVPIPTSK 490 (567)
Q Consensus 466 ~v~~E~~~~~~-~H~hi~~vPvp~~~ 490 (567)
-+||- -+.+ .|+|+|++++-.+.
T Consensus 237 rmf~H--YqPSyYHlHVHi~nik~~~ 260 (310)
T KOG3969|consen 237 RMFFH--YQPSYYHLHVHIVNIKHDH 260 (310)
T ss_pred EEEEE--ecCceEEEEEEEEeccCCC
Confidence 23333 1223 69999999987663
No 179
>PRK05270 galactose-1-phosphate uridylyltransferase; Provisional
Probab=23.75 E-value=1.2e+02 Score=33.56 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=55.5
Q ss_pred CCCCccccCCCC---------CCcceEEEE---CCEEEEEecCCCCCCCeEEEEeccccCCCCCCCHHHHHHHHHHHHHH
Q 008383 388 SKECWFCLSSPS---------VESHLIVSV---GEYYYCALPKGPLVEDHVLVIPVEHVPNTISTSPECEKELGRFQNSL 455 (567)
Q Consensus 388 ~~~C~FC~~~~~---------~~~hliis~---g~~~yl~l~kgpl~~gH~LIiP~~H~~s~~~~~~~~~~E~~~~~~~L 455 (567)
=..|..|+.|.. ...|.||-+ |+..|+-...+.+-.-||+|+--+|.|= .++.+++..|..|.+.+
T Consensus 171 YP~C~LC~ENeGY~Gr~~hPAR~NhRiI~~~L~ge~W~fQYSPY~YynEH~Ivl~~~H~PM--kI~~~tF~rLL~fv~~f 248 (493)
T PRK05270 171 YPKCLLCMENEGYAGRLNHPARSNHRIIRLTLGGESWGFQYSPYAYFNEHCIVLSEKHRPM--KISRKTFERLLDFVEQF 248 (493)
T ss_pred CCcccccccccCcCCCCCCccccCceEEEEeeCCceeeeecCchheecceeEEecCccCcc--EecHHHHHHHHHHHHhC
Confidence 468999998743 346777643 5666777778888899999999999983 46889999999988876
Q ss_pred HHHHHh
Q 008383 456 MMYYKN 461 (567)
Q Consensus 456 ~~~~~~ 461 (567)
=..|.-
T Consensus 249 PhYFiG 254 (493)
T PRK05270 249 PHYFIG 254 (493)
T ss_pred Cccccc
Confidence 666653
No 180
>PF12239 DUF3605: Protein of unknown function (DUF3605); InterPro: IPR022036 This family of proteins is found in eukaryotes and viruses. Proteins in this family are typically between 161 and 256 amino acids in length.
Probab=21.85 E-value=1.9e+02 Score=27.21 Aligned_cols=69 Identities=22% Similarity=0.370 Sum_probs=43.3
Q ss_pred EEEEec-CCC--CCCC--eEEE---EeccccCCCCCCCHHHHHHHHHHHHHHH-HHHHhcCCceEEEE-ecCCC----CC
Q 008383 412 YYCALP-KGP--LVED--HVLV---IPVEHVPNTISTSPECEKELGRFQNSLM-MYYKNQGKEAVFFE-WLSKR----GT 477 (567)
Q Consensus 412 ~yl~l~-kgp--l~~g--H~LI---iP~~H~~s~~~~~~~~~~E~~~~~~~L~-~~~~~~g~~~v~~E-~~~~~----~~ 477 (567)
-|-++. .-| +.+| |.+| +|+..-+...+++++..++|.+|.+..- .-+ ..+..++.|- ..+.+ ..
T Consensus 73 d~kIl~NDwPY~~e~~I~HlVVWsK~~L~~d~~~gd~t~~~r~~I~~fv~~~f~~~~-~~~~~v~WF~N~~~LqSV~~v~ 151 (158)
T PF12239_consen 73 DYKILRNDWPYGFEPGIVHLVVWSKFPLPVDPETGDLTPESRELIEDFVQRTFVDRL-IPEDNVLWFKNWPSLQSVRAVE 151 (158)
T ss_pred ceEEEecCCCcCCCCCceEEEEEecCccccccccccccHHHHHHHHHHHHHHHHhhc-CCCccEEEEeCchhcCCcCcce
Confidence 344443 455 4555 8877 5777777788899999999999865322 222 2234677777 33444 35
Q ss_pred eeEE
Q 008383 478 HANL 481 (567)
Q Consensus 478 H~hi 481 (567)
|+|+
T Consensus 152 H~HV 155 (158)
T PF12239_consen 152 HIHV 155 (158)
T ss_pred EEEE
Confidence 7776
No 181
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=21.81 E-value=1.9e+02 Score=25.18 Aligned_cols=66 Identities=12% Similarity=0.182 Sum_probs=34.2
Q ss_pred CCCCEEEEEcCCCC---------------CHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCc
Q 008383 1 MSPPRILLCGDVLG---------------RLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPI 65 (567)
Q Consensus 1 M~~~KILv~GDvhG---------------~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ 65 (567)
|..+||.|+||..- +-+++.+.++++..+ .+.++++.=++... ..+.+.+| .+-..
T Consensus 1 ~~~~kIaVIGD~dtv~GFrLaGi~~~~v~~~ee~~~~i~~l~~~--d~gII~Ite~~a~~---i~~~i~~~----~~~~~ 71 (104)
T PRK01395 1 KTMYKIGVVGDKDSILPFKALGIDVFPVIDEQEAINTLRKLAME--DYGIIYITEQIAAD---IPETIERY----DNQVL 71 (104)
T ss_pred CcceeEEEEECHHHHHHHHHcCCeeEEecChHHHHHHHHHHhcC--CcEEEEEcHHHHHH---hHHHHHHh----cCCCC
Confidence 55679999999211 113444455555422 36666666554332 12234444 23345
Q ss_pred c-EEEEccCCC
Q 008383 66 P-TYFIGDYGV 75 (567)
Q Consensus 66 p-tyfv~GN~~ 75 (567)
| ++.+|+.+-
T Consensus 72 P~Il~IP~~~g 82 (104)
T PRK01395 72 PAIILIPSNQG 82 (104)
T ss_pred CEEEEeCCCCC
Confidence 6 566776553
No 182
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.72 E-value=1.3e+02 Score=32.72 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=42.4
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHhhcCCCcEEEEecCCCCCChhhHHHHHHHhcccCCCCccEEEEccCCCChHHHH
Q 008383 6 ILLCGDVLGRLNQLFKRVQSVNKSAGPFDAVLCVGQFFPDSSELLDEFMNYVEGRSEIPIPTYFIGDYGVGAAKVL 81 (567)
Q Consensus 6 ILv~GDvhG~~~~l~~kv~~l~~k~GpfD~vi~~GDff~~~~~~~~~~~~~l~g~~~~p~ptyfv~GN~~~~~~~~ 81 (567)
|+++|=--+-=.....|+.-..+|.| +..+++|||-|-.+ .+.++.....++.+|.|--.- .-+|..+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG-~K~~LvcaDTFRag-----AfDQLkqnA~k~~iP~ygsyt-e~dpv~ia 172 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKG-YKVALVCADTFRAG-----AFDQLKQNATKARVPFYGSYT-EADPVKIA 172 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcC-CceeEEeecccccc-----hHHHHHHHhHhhCCeeEeccc-ccchHHHH
Confidence 55565433333344557777777777 89999999998753 334444434678888776433 33344443
Done!