Query 008384
Match_columns 567
No_of_seqs 449 out of 2482
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 23:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1262 FAD-binding protein DI 100.0 8E-109 2E-113 825.8 24.6 534 9-555 8-543 (543)
2 TIGR01678 FAD_lactone_ox sugar 100.0 3E-45 6.4E-50 394.5 37.7 417 43-532 2-437 (438)
3 TIGR01679 bact_FAD_ox FAD-link 100.0 8.8E-45 1.9E-49 390.2 34.1 406 45-536 1-415 (419)
4 TIGR01676 GLDHase galactonolac 100.0 3E-44 6.6E-49 389.4 38.0 445 43-536 49-537 (541)
5 TIGR01677 pln_FAD_oxido plant- 100.0 2.9E-41 6.3E-46 370.8 38.3 455 37-541 13-511 (557)
6 PLN02465 L-galactono-1,4-lacto 100.0 3.1E-41 6.7E-46 368.7 37.1 447 43-537 84-568 (573)
7 PLN02441 cytokinin dehydrogena 100.0 3.2E-36 6.8E-41 327.3 35.1 436 44-530 53-511 (525)
8 PLN02805 D-lactate dehydrogena 100.0 1.2E-32 2.5E-37 303.5 33.0 383 59-530 139-543 (555)
9 PRK11230 glycolate oxidase sub 100.0 4.7E-31 1E-35 289.0 31.5 191 59-257 61-255 (499)
10 COG0277 GlcD FAD/FMN-containin 100.0 7E-31 1.5E-35 286.2 28.2 405 58-532 36-452 (459)
11 TIGR00387 glcD glycolate oxida 100.0 3.7E-30 8E-35 277.0 31.4 191 59-257 3-198 (413)
12 KOG4730 D-arabinono-1, 4-lacto 100.0 3.2E-29 6.9E-34 258.0 29.5 429 59-535 55-508 (518)
13 PRK11282 glcE glycolate oxidas 99.9 3E-26 6.5E-31 239.4 19.2 184 62-257 3-193 (352)
14 KOG1231 Proteins containing th 99.9 3.8E-24 8.3E-29 220.7 16.1 170 55-233 62-240 (505)
15 PF01565 FAD_binding_4: FAD bi 99.8 2.5E-20 5.4E-25 170.6 11.5 133 59-199 6-139 (139)
16 PRK11183 D-lactate dehydrogena 99.8 1.5E-19 3.2E-24 194.4 14.4 191 59-257 44-290 (564)
17 KOG1232 Proteins containing th 99.8 3.7E-19 8E-24 179.8 10.2 190 59-256 95-289 (511)
18 PRK13905 murB UDP-N-acetylenol 99.8 1.9E-18 4.1E-23 178.2 13.4 150 59-232 36-193 (298)
19 KOG1233 Alkyl-dihydroxyacetone 99.7 6.5E-17 1.4E-21 163.8 12.2 205 45-258 149-365 (613)
20 PRK12436 UDP-N-acetylenolpyruv 99.7 3.4E-16 7.5E-21 161.5 13.5 146 59-231 42-197 (305)
21 PRK14652 UDP-N-acetylenolpyruv 99.7 6.2E-16 1.3E-20 159.3 14.2 147 59-232 41-196 (302)
22 PRK13906 murB UDP-N-acetylenol 99.7 6.2E-16 1.3E-20 159.6 13.4 149 59-231 42-197 (307)
23 PRK13903 murB UDP-N-acetylenol 99.6 1.1E-15 2.4E-20 160.3 13.7 147 59-232 38-197 (363)
24 TIGR00179 murB UDP-N-acetyleno 99.6 1.8E-15 3.8E-20 154.9 13.5 147 59-231 18-175 (284)
25 PRK14649 UDP-N-acetylenolpyruv 99.6 2E-14 4.3E-19 147.8 13.3 151 59-232 26-193 (295)
26 PRK14653 UDP-N-acetylenolpyruv 99.5 6.2E-14 1.3E-18 143.8 13.8 145 59-232 39-194 (297)
27 PF04030 ALO: D-arabinono-1,4- 99.5 4.1E-14 8.8E-19 143.3 9.4 131 391-536 124-257 (259)
28 PRK14650 UDP-N-acetylenolpyruv 99.5 3.4E-13 7.3E-18 138.1 13.3 146 59-232 38-195 (302)
29 COG0812 MurB UDP-N-acetylmuram 99.5 4.1E-13 8.8E-18 135.5 13.1 147 59-231 26-183 (291)
30 PRK00046 murB UDP-N-acetylenol 99.5 4.6E-13 1E-17 139.0 12.8 146 59-231 26-188 (334)
31 PRK14648 UDP-N-acetylenolpyruv 99.4 3.2E-12 6.9E-17 132.7 12.7 148 59-232 35-237 (354)
32 PLN00107 FAD-dependent oxidore 99.3 1.9E-11 4.2E-16 120.5 11.5 133 395-541 65-205 (257)
33 PRK14651 UDP-N-acetylenolpyruv 99.2 7.9E-11 1.7E-15 119.0 11.7 121 90-231 39-170 (273)
34 PRK13904 murB UDP-N-acetylenol 98.9 3.9E-09 8.5E-14 105.8 10.0 120 90-232 33-160 (257)
35 PF09265 Cytokin-bind: Cytokin 96.6 0.0045 9.7E-08 63.1 6.6 123 393-530 142-274 (281)
36 PF02913 FAD-oxidase_C: FAD li 94.5 0.2 4.3E-06 49.4 9.3 113 391-530 127-243 (248)
37 PRK09799 putative oxidoreducta 93.7 0.085 1.8E-06 53.6 4.7 142 62-227 7-155 (258)
38 TIGR02963 xanthine_xdhA xanthi 92.5 0.24 5.2E-06 54.6 6.4 147 61-228 196-358 (467)
39 PF00941 FAD_binding_5: FAD bi 92.1 0.054 1.2E-06 51.4 0.6 62 105-166 44-114 (171)
40 TIGR03312 Se_sel_red_FAD proba 90.7 0.35 7.7E-06 49.0 4.9 96 62-166 6-108 (257)
41 PRK09971 xanthine dehydrogenas 87.7 0.41 8.9E-06 49.4 3.0 98 62-166 9-117 (291)
42 TIGR03195 4hydrxCoA_B 4-hydrox 87.0 0.73 1.6E-05 48.2 4.3 98 62-166 9-116 (321)
43 PLN02906 xanthine dehydrogenas 87.0 1.2 2.7E-05 55.2 7.0 99 62-166 233-349 (1319)
44 TIGR03199 pucC xanthine dehydr 86.8 0.48 1.1E-05 48.2 2.8 97 64-166 2-108 (264)
45 PF08031 BBE: Berberine and be 80.6 1 2.2E-05 33.2 1.5 24 508-531 16-41 (47)
46 COG4630 XdhA Xanthine dehydrog 77.8 2.7 5.9E-05 44.3 4.2 104 104-214 244-354 (493)
47 PLN00192 aldehyde oxidase 70.1 8.2 0.00018 48.3 6.5 101 61-166 237-351 (1344)
48 TIGR02969 mam_aldehyde_ox alde 68.8 5.5 0.00012 49.7 4.6 98 62-166 241-357 (1330)
49 TIGR03752 conj_TIGR03752 integ 57.1 13 0.00029 40.6 4.3 49 142-200 278-327 (472)
50 COG1319 CoxM Aerobic-type carb 53.3 12 0.00027 38.5 3.2 99 62-166 8-116 (284)
51 KOG1996 mRNA splicing factor [ 45.1 12 0.00025 38.3 1.5 29 518-548 96-124 (378)
52 PF02209 VHP: Villin headpiece 36.8 20 0.00043 25.0 1.2 19 502-520 1-21 (36)
53 smart00751 BSD domain in trans 26.6 33 0.00072 25.5 1.0 12 501-512 32-43 (51)
54 PF02228 Gag_p19: Major core p 24.6 32 0.0007 28.1 0.7 16 411-426 49-64 (92)
55 smart00153 VHP Villin headpiec 23.2 55 0.0012 22.7 1.5 19 502-520 1-21 (36)
56 PF09286 Pro-kuma_activ: Pro-k 21.1 1.1E+02 0.0024 27.7 3.6 51 482-533 27-79 (143)
No 1
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=100.00 E-value=7.7e-109 Score=825.84 Aligned_cols=534 Identities=48% Similarity=0.862 Sum_probs=483.6
Q ss_pred CcccchhhHHHHhhccceEEEEEecCCCcchhhhhhcccccccccccccCCCCCHHHHHHHHHHHHhcCC-CCCceeecc
Q 008384 9 RPKRKKGIADFLVQFRWILVVFVVLPISVTIYFLIYLGDVKSDMKSYKKRQKEHDENVKKVVKRLKERNP-SKDGLVCTA 87 (567)
Q Consensus 9 ~~~~~~~~~~~l~~~r~i~~~~~~lp~s~~~~~~~~~~n~~~~~~~~~pa~~~~~~~V~~i~~~~~~~~~-~~~~~~~~~ 87 (567)
++++...-+.+++++||||||+|+||.|+.|+.++++|++| . .+.++++-.|.+.|+.||++++++.. +.+..+|++
T Consensus 8 ~~~k~~~Wv~~~~~fRwv~Vv~f~LP~S~lF~~~i~~r~~~-~-~~~ssa~~~H~qrVkkIqkqlkew~d~s~k~~lcta 85 (543)
T KOG1262|consen 8 VKAKAIRWVEYFVHFRWVFVVLFLLPLSFLFDLFIYFRIWL-V-RKLSSAPREHQQRVKKIQKQLKEWLDDSEKKPLCTA 85 (543)
T ss_pred hhhhhhhHHHHHhhcceEEEehhhhhHHHHHHHHHHHHHHH-H-HHhccCchHHHHHHHHHHHHHHhhccccccCccccc
Confidence 44555445668999999999999999999999999999955 3 23455656799999999999999775 667899999
Q ss_pred CCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhccc
Q 008384 88 RKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGY 167 (567)
Q Consensus 88 ~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~g 167 (567)
+.+|.++|.+..++... .--|++..|.+||++|.++.+|+|||+|+++++.++|.+.|+++|+.|+.++.||||+++|.
T Consensus 86 Rp~Wltvs~r~~dykk~-h~~v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~EldDlTvGGLinG~ 164 (543)
T KOG1262|consen 86 RPGWLTVSTRFFDYKKC-HHQVPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPELDDLTVGGLINGV 164 (543)
T ss_pred CCCeEEEEEecchhhhh-cccCCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeecccccceecceeeec
Confidence 99999999999887754 34456666788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHH
Q 008384 168 GIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLR 247 (567)
Q Consensus 168 g~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~ 247 (567)
|+.++|++||++.+.+.+.|||++||+++++.++++++|||+|+.+|.||+|+.+.+|+|++|++++++++|.++.+ ++
T Consensus 165 Gies~ShkyGlfq~~~~aYEvVladGelv~~t~dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~-l~ 243 (543)
T KOG1262|consen 165 GIESSSHKYGLFQHICTAYEVVLADGELVRVTPDNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHG-LD 243 (543)
T ss_pred ccccccchhhhHHhhhheeEEEecCCeEEEecCCcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEeccc-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998754 99
Q ss_pred HHHHHHHHHhCCCCCCCcCCCCccceEEEEEecCCceEEEEeecCChHHhhhcccccccccccccchhhHHHhhhhhcCc
Q 008384 248 EIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGE 327 (567)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~ 327 (567)
++++.+.+... +.+.....++|+|+++|++++||+|+|.+++..+..+ .+++|.+++|++||||.|++..++.+.
T Consensus 244 e~c~k~~e~~~----dsdkntk~~dfvE~liyn~~egviMvG~fad~~dak~-~~kvN~vgwwyKpWFykHvet~lkkge 318 (543)
T KOG1262|consen 244 EYCKKITELSG----DSDKNTKNADFVEGLIYNKNEGVIMVGNFADKVDAKS-NAKVNDVGWWYKPWFYKHVETFLKKGE 318 (543)
T ss_pred HHHHHHHhhcc----cccccccccchhheeeecCCccEEEEEeccCcccccc-ccccccchhhhhhHHHHHHHHHHhcCC
Confidence 99998888643 2222223479999999999999999999998666544 368999999999999999999998888
Q ss_pred ccccccccccccccCcceeeccccccccCchhhhhhhhccCCChhhhhhHhhhchhhhcccCCceEEEEEeeccccHHHH
Q 008384 328 FTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDA 407 (567)
Q Consensus 328 ~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~R~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~viqDv~VP~~~l~e~ 407 (567)
..||||+++|++||.|++||+.+.++|||++++||++++|++|+++++++++++.++++++.+.+|+|||.||++++.|+
T Consensus 319 ~~EYIPlr~YyhRHtrsifWe~~~iiPFGn~~~FRyllgWl~PPKia~LKaTt~ealRkly~~~hV~QDmlvPl~kl~ea 398 (543)
T KOG1262|consen 319 GEEYIPLRSYYHRHTRSIFWELEDIIPFGNNPVFRYLLGWLCPPKIAFLKATTGEALRKLYFAKHVFQDMLVPLDKLKEA 398 (543)
T ss_pred CceeeeHHHHHHhccceeEEeeeeeeecCCcHHHHHHHHhcCCChHHHhhcccHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCceeeeeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHH
Q 008384 408 LEWQHREVEVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQW 487 (567)
Q Consensus 408 l~~l~~~~~~~P~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~ 487 (567)
|+.++++++.||+||||+++..+|..|+++|.|.-- ++.+...+||+|+|+||+|+...|.+.|++.+.+|+||++
T Consensus 399 ld~~hke~evYPiwlcP~~l~~qp~~Gq~~~~p~~r----~~~~~~~~my~DvGvYg~pg~v~r~e~y~~~~a~RrmEkf 474 (543)
T KOG1262|consen 399 LDTFHKEFEVYPIWLCPFRLYSQPGQGQLRPPPKSR----LVPGTNASMYNDVGVYGTPGQVERREPYNPTHAMRRMEKF 474 (543)
T ss_pred HHHHHhhheeeeeeeeeeeccCCCCCceecCCcccc----CCCCCcceeEEecccccCCccccccCCCCHHHHHHHHHHH
Confidence 999999999999999999999987777777665322 2222345999999999999999999999999999999999
Q ss_pred HHHcCCcccccccccCCHHHHHhhCChhHHHHHHHhCCCCCCCccchhhhcc-CccchHHHHHHHHhhc
Q 008384 488 LIENGGFQPQYAVSELSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKSKK-GRKTEKEVQEAEQAQL 555 (567)
Q Consensus 488 v~~~gG~k~Lya~~y~t~~ef~~~y~~~~y~~lr~kydp~~~f~~~y~k~~~-~~~~~~~~~~~~~~~~ 555 (567)
|++++|+++|||+.||||+|||+|||+++|+++|.||+|.|+||++|||++. +|..+++.++++||.+
T Consensus 475 vr~v~Gfq~~YAd~~m~eeef~eMFd~tLY~~~R~ky~cigaFp~vYdKikk~gr~~~~~~~~a~~~~~ 543 (543)
T KOG1262|consen 475 VRSVHGFQMLYADIYMSEEEFWEMFDGTLYNQVRLKYHCIGAFPRVYDKIKKEGRVISIGETYAVKKEE 543 (543)
T ss_pred HHHccCcceeehhhhcCHHHHHHHhhhHHHHHHHHHcCccccchHHHHhhchhccccchhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999655 9999999999999853
No 2
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=3e-45 Score=394.51 Aligned_cols=417 Identities=20% Similarity=0.287 Sum_probs=297.6
Q ss_pred hhcccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceE
Q 008384 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (567)
Q Consensus 43 ~~~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (567)
+.|+| |+....+.|. .|.+.++|+++++.+++.+. ...++|+||++. +...++|++|||++||+|++
T Consensus 2 ~~w~n-W~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~--~v~v~G~GhS~s-------~~~~~~gvvIdl~~l~~i~~ 71 (438)
T TIGR01678 2 VQFQN-WAKTYSASPEVYYQPTSVEEVREVLALAREQKK--KVKVVGGGHSPS-------DIACTDGFLIHLDKMNKVLQ 71 (438)
T ss_pred ceEEe-CCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC--eEEEECCCCCCC-------CCccCCeEEEEhhhcCCceE
Confidence 46789 8887767776 78888888888888887663 455677777653 22345789999999999999
Q ss_pred EeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEc
Q 008384 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (567)
Q Consensus 120 id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s 199 (567)
+|+++++|+|+||+++.+|.+.|.++|+++|+.|+++.+||||++++ |.|+++.+||.++|+|+++++|++||++++++
T Consensus 72 id~~~~~vtV~aG~~l~~L~~~L~~~Gl~l~~~g~~~~~TvGG~iat-g~hG~~~~~G~~~d~V~~l~vV~~~G~i~~~s 150 (438)
T TIGR01678 72 FDKEKKQITVEAGIRLYQLHEQLDEHGYSMSNLGSISEVSVAGIIST-GTHGSSIKHGILATQVVALTIMTADGEVLECS 150 (438)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHcCCEecCCCCCCCceeeehhcC-CCCCCccccCcHHhhEEEEEEEcCCCcEEEeC
Confidence 99999999999999999999999999999998889999999999965 55667899999999999999999999999999
Q ss_pred CCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEe
Q 008384 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (567)
Q Consensus 200 ~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (567)
++ +++||||+.+||+|+|||||++|||++|......... ..+++++++.+.+... ..++++++||
T Consensus 151 ~~-~~~dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~w~ 215 (438)
T TIGR01678 151 EE-RNADVFQAARVSLGCLGIIVTVTIQVVPQFHLQETSF---VSTLKELLDNWDSHWK-----------SSEFFRVLWF 215 (438)
T ss_pred CC-CChhHHHHHhcCCCceEeeEEEEEEEEeccceEEEEe---cCCHHHHHHHHHHHhh-----------cCCeEEEEEE
Confidence 87 8999999999999999999999999999887554322 3578999998877632 2589999999
Q ss_pred cCC-ceEEEEeecCChHHhhhcccccccccccccchhhH-HHhhhhhcCcccccccccccccccCcceeecccc---ccc
Q 008384 280 TST-EAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQ-HAATALKRGEFTEYIPTREYYHRHTRSLYWEGKL---ILP 354 (567)
Q Consensus 280 ~~~-~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~-~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~---~~p 354 (567)
+.. ++++..++..+..... . ..||+- ...... .+ .+ .|.++. +.|
T Consensus 216 p~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~-----~~------~l-------~~~~~~~~~~~~ 265 (438)
T TIGR01678 216 PYTENVVIWRQNKTNKAPSS-------P-----SNSFWDYKLGFFL-----YE------FL-------LWTSKYLPCLTP 265 (438)
T ss_pred cCCCcEEEEECccCCCCccc-------c-----cchhhhhhHHHHH-----HH------HH-------HHHHhhcccccH
Confidence 765 4555555544321100 0 012111 000000 00 00 000000 001
Q ss_pred cCchhhhhhhhccC---CChhh-hhhHhhhchhhhcccCCceEEEEEeeccccHHHHHHHHHHHhhcCC-----ceeeee
Q 008384 355 FGDQFWFRFLFGWM---MPPKV-SLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVYP-----LWLCPH 425 (567)
Q Consensus 355 ~~~~~~~R~l~~~~---~~~~~-~~~~~~~~~~i~~~~~~~~viqDv~VP~~~l~e~l~~l~~~~~~~P-----~wlcp~ 425 (567)
.-+...++.....- -.... ..++.++.... .+++..+++||+++++++|++++++++..| .-++|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-----f~~~~~Ey~vP~~~~~~al~~l~~~~~~~~~~~~~~v~fpi 340 (438)
T TIGR01678 266 WIERFFFWMLYGEKSSTKKESSNLSHKIFTMECR-----FSQHVQEWGIPREKTKEALLELKAMLEAHAKNKEVYAHYPV 340 (438)
T ss_pred HHHHHHHHhhcCCccCCCcceecchHHhhcccce-----eehhceeecccHHHHHHHHHHHHHHHHhcccccCceEeeeE
Confidence 10001111111100 00000 01122221111 224567999999999999999999998763 366799
Q ss_pred EEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHHHcCCccccccccc-CC
Q 008384 426 RLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSE-LS 504 (567)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~Lya~~y-~t 504 (567)
.+|.+.. . .+|..| |||..+ .+.+||+|-.|. +.... -+...+++.+|++++++||++++-+.+. ++
T Consensus 341 EvR~~~~--~-~~Dd~w-LSp~~~---rds~~i~~~~y~-~~~~~----~~~~~~f~~~E~i~~~~gGRPHWgK~h~~~~ 408 (438)
T TIGR01678 341 EVRFTRG--T-LPDECL-LSPCFQ---VDTCYINAIMYR-PFGKD----VPRLDYFLAYETIMKKFGGKPHWAKAHNVCK 408 (438)
T ss_pred EEEEeCC--C-CCCcee-cCCCCC---CceEEEEEEEcc-CCCCC----CCHHHHHHHHHHHHHHcCCCCCchhcccccC
Confidence 9998731 0 115555 466443 468999997775 43111 1226899999999999999998888888 89
Q ss_pred HHHHHhhCCh-hHHHHHHHhCCCCCCCcc
Q 008384 505 EKNFWRMFDA-DLYEKCRKKYKAVGTFMS 532 (567)
Q Consensus 505 ~~ef~~~y~~-~~y~~lr~kydp~~~f~~ 532 (567)
.+++.++||+ +.|.+||+++||+|.|.|
T Consensus 409 ~~~l~~~YP~~~~F~~vr~~~DP~g~F~N 437 (438)
T TIGR01678 409 QKDFEEMYPTLHKFCDIRKKLDPTGVFLN 437 (438)
T ss_pred HHHHHHHCcCHHHHHHHHHhhCcccccCC
Confidence 9999999998 899999999999999987
No 3
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=8.8e-45 Score=390.16 Aligned_cols=406 Identities=14% Similarity=0.172 Sum_probs=286.6
Q ss_pred cccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEe
Q 008384 45 LGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDID 121 (567)
Q Consensus 45 ~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id 121 (567)
|+| |+....+.|. .|.++++|+++++.++ . ...++|+||++. +...++|++|||++||+|+++|
T Consensus 1 w~n-W~~~~~~~p~~v~~P~s~~ev~~~v~~a~---~--~v~~~G~Ghs~~-------~~~~~~g~~idl~~l~~i~~~d 67 (419)
T TIGR01679 1 WSN-WSGEQVAAPSAIVRPTDEGELADVIAQAA---K--PVRAVGSGHSFT-------DLACTDGTMISLTGLQGVVDVD 67 (419)
T ss_pred CcC-CCCCccCCCCeEECCCCHHHHHHHHHHhC---C--CEEEEeCCCCCC-------CcccCCCEEEEhhHcCCceeec
Confidence 578 8887777776 5666666666555543 2 355677777653 2234578999999999999999
Q ss_pred CCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCC
Q 008384 122 KDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD 201 (567)
Q Consensus 122 ~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~ 201 (567)
+++++|+||||+++.+|.+.|.++|+.+|+.|+++.+||||+++ +|.|+++.++|.++|+|++++||++||++++++++
T Consensus 68 ~~~~~v~v~aG~~l~~l~~~L~~~G~~l~~~~~~~~~tvGG~ia-~~~hG~g~~~G~~~d~V~~l~vV~a~G~v~~~~~~ 146 (419)
T TIGR01679 68 QPTGLATVEAGTRLGALGPQLAQRGLGLENQGDIDPQSIGGALG-TATHGTGVRFQALHARIVSLRLVTAGGKVLDLSEG 146 (419)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHcCCccccCCCCCCceecccee-cCCCCCCccCCchhhhEEEEEEEcCCCCEEEEcCC
Confidence 99999999999999999999999999999889999999999995 46777788999999999999999999999999987
Q ss_pred CCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEecC
Q 008384 202 NEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTS 281 (567)
Q Consensus 202 ~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~ 281 (567)
+++|||||++||+|+|||||++|||++|.+....... ..+++++++.+.+++. ..+++++++++.
T Consensus 147 -~~~dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~~---~~~~~~~~~~~~~~~~-----------~~~~~~~~~~p~ 211 (419)
T TIGR01679 147 -DDQDMYLAARVSLGALGVISQVTLQTVALFRLRRRDW---RRPLAQTLERLDEFVD-----------GHRHFEFYVFPF 211 (419)
T ss_pred -CCHHHHHHHHhCCCceEEEEEEEEEeecceEeEEEEE---ecCHHHHHHHHHHHHh-----------cCCeEEEEEecC
Confidence 8999999999999999999999999999987544332 2467888888887742 247899998876
Q ss_pred -CceEEEEeecCChHHhhhccccccccccccc-chhhHHHhhhhhcCcccccccccccccccCcceeeccccccccCchh
Q 008384 282 -TEAVFMTGRYASKEEAKKKGNVINSVGWWFK-PWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQF 359 (567)
Q Consensus 282 -~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~-p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~ 359 (567)
++++++.+..++..+. . .. ...+ .+. ...+ .+.. .....| ... ++.
T Consensus 212 ~~~~~~~~~~~~~~~~~-~--~~-----~~~~~~~~-~~~~-~l~~--~~~~~~--~~~-------~~~----------- 259 (419)
T TIGR01679 212 AGKALTITMDRSDEQPK-P--RQ-----RDVDENFL-GGLR-LLRQ--TLRRFP--SLR-------PRL----------- 259 (419)
T ss_pred CCeEEEEECCcCCCccc-c--cc-----cchhhhHH-HHHH-HHHH--hcccCc--hhH-------HHH-----------
Confidence 4566666665542110 0 00 0000 011 0111 0000 000000 000 000
Q ss_pred hhhhhhccCCChhh--hhhHhhhchhhhcccCCceEEEEEeeccccHHHHHHHHHHHhhcC-CceeeeeEEecCCCCccC
Q 008384 360 WFRFLFGWMMPPKV--SLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVY-PLWLCPHRLYKLPYKTMV 436 (567)
Q Consensus 360 ~~R~l~~~~~~~~~--~~~~~~~~~~i~~~~~~~~viqDv~VP~~~l~e~l~~l~~~~~~~-P~wlcp~~~~~~~~~~~~ 436 (567)
.+.....+-+.+. ..+|....+.. ..+.-.+++||.++.+++|+.+.++++.+ +.-.+|+..|.++
T Consensus 260 -~~~~~~~~~~~~~~~~~~r~~~~~~~-----~~f~q~e~~iP~~~~~~al~~i~~~i~~~~~~~~~pve~R~~~----- 328 (419)
T TIGR01679 260 -NRLMTNMMSSETVVDRAYKVFATQRK-----VRFNEMEYHLPRENGRKALQEVIDLVERRSPPVMFPIEVRFSA----- 328 (419)
T ss_pred -HHHHHhhcCCceeeccceEEeccccc-----ceeeEEEEecchhHHHHHHHHHHHHHHhcCCCccceEEEEEec-----
Confidence 0000000000000 00011110000 11223399999999999999999988764 6666799999873
Q ss_pred CCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHHHcCCcccccccccCCHHHHHhhCCh-h
Q 008384 437 YPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA-D 515 (567)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~Lya~~y~t~~ef~~~y~~-~ 515 (567)
+|+.| |||..+ .+.++|++-.|..+ +...+++++|++++++||+.++.+++.++.++|+++||+ +
T Consensus 329 -ad~~~-LS~~~~---r~~~~ia~~~~~~~---------~~~~~~~~~e~i~~~~gGRpHwgK~~~l~~~~l~~~YP~~~ 394 (419)
T TIGR01679 329 -PDDSW-LSPFYG---RPTCSIAVHQYAGM---------DFESYFRAVEPIFRRYAGRPHWGKRHYLTAATLRERYPRWD 394 (419)
T ss_pred -CCCcc-cCCCCC---CCcEEEEEEEcCCC---------CHHHHHHHHHHHHHHcCCCCCchhccCCCHHHHHHHCcCHH
Confidence 34444 354222 35789888777521 226899999999999999999999999999999999998 8
Q ss_pred HHHHHHHhCCCCCCCccchhh
Q 008384 516 LYEKCRKKYKAVGTFMSVYYK 536 (567)
Q Consensus 516 ~y~~lr~kydp~~~f~~~y~k 536 (567)
.|.++|++|||++.|.|-|-+
T Consensus 395 ~F~~~r~~~DP~g~F~n~~~~ 415 (419)
T TIGR01679 395 DFAAVRDDLDPDRRFLNPYTR 415 (419)
T ss_pred HHHHHHHHhCCCCccCCHHHH
Confidence 999999999999999998765
No 4
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=3e-44 Score=389.38 Aligned_cols=445 Identities=15% Similarity=0.135 Sum_probs=301.6
Q ss_pred hhcccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceE
Q 008384 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (567)
Q Consensus 43 ~~~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (567)
..|+| |+....+.|+ .|.+.++|+++++.+++.+. .++++|+||++. +.+.+++.+|||++||+|++
T Consensus 49 ~~w~N-Wsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~--~Vr~~GsGhS~s-------g~a~t~g~lldL~~ln~Vl~ 118 (541)
T TIGR01676 49 HTVSN-WSGTHEVLTRTFHQPEAIEELEGIVKQANEKKA--RIRPVGSGLSPN-------GIGLSRAGMVNLALMDKVLE 118 (541)
T ss_pred ccccc-cCCccccCcceEECCCCHHHHHHHHHHHHHcCC--cEEEECCCcCCC-------CcccCCCeEEEhhhCCCCEE
Confidence 45789 9998888876 78888888888888887663 456677777654 22233456899999999999
Q ss_pred EeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEc
Q 008384 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (567)
Q Consensus 120 id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s 199 (567)
+|+++++|+||||+++.+|.+.|.++|+++|+.|+++.+||||+++ +|.||++.++|.++|+|++++||+++|++++++
T Consensus 119 vD~~~~tVtV~AG~~l~~L~~~L~~~Glal~n~gsi~~~TIGGaia-tgtHGtg~~~G~l~d~V~~l~lVta~G~vv~~s 197 (541)
T TIGR01676 119 VDEEKKRVRVQAGIRVQQLVDAIKEYGITLQNFASIREQQIGGIIQ-VGAHGTGAKLPPIDEQVIAMKLVTPAKGTIEIS 197 (541)
T ss_pred EcCCCCEEEEcCCCCHHHHHHHHHHcCCEeccCCCCCCceEccccc-cCCcCCCCCCCCHHHhEEEEEEEECCCCEEEEC
Confidence 9999999999999999999999999999999889999999999996 467777889999999999999999999999999
Q ss_pred CCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEe
Q 008384 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (567)
Q Consensus 200 ~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (567)
++ +++|||||++||+|+|||||++||+++|.+.+....+. .+++++++.+.++.. .+++++++||
T Consensus 198 ~~-~~pdLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~---~~~~e~l~~~~~~~~-----------~~~h~~f~wf 262 (541)
T TIGR01676 198 KD-KDPELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI---SNMKDIKKNHKKFLA-----------DNKHVKYLHI 262 (541)
T ss_pred CC-CCHHHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe---cCHHHHHHHHHHHHh-----------cCCcEEEEEE
Confidence 86 89999999999999999999999999999997766654 468999999888742 2589999999
Q ss_pred cCCceEEEEeec-CChHHhhhcccccccc--ccccc---chhhHHHhhhhh--cCcccccccccccccccCcceeecccc
Q 008384 280 TSTEAVFMTGRY-ASKEEAKKKGNVINSV--GWWFK---PWFYQHAATALK--RGEFTEYIPTREYYHRHTRSLYWEGKL 351 (567)
Q Consensus 280 ~~~~~v~~~g~~-~~~~~~~~~~~~~~~~--~~~~~---p~fy~~~~~~~~--~~~~~e~~p~~dy~~r~~r~~fw~~~~ 351 (567)
+....+++.... ++....... ..+.. ..... ..+...+..... .....+-..+..+.+.. ..+....
T Consensus 263 P~t~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---l~~~~~~ 337 (541)
T TIGR01676 263 PYTDAIVVVTCNPISKSRGPPK--FKPKYTSEEAIQHVRDLYRESLKKYRGQVADSASEEPDIDEFSFTE---LRDKLLA 337 (541)
T ss_pred cCCCceeEEEcCCCCcccCCCC--ccccccchhhhhhhhhhhhhhhhhhhcccccccccccchhhhHHHH---HHHHHhh
Confidence 887666554433 221100000 00000 00000 000000000000 00000000000000000 0000000
Q ss_pred ccccCch---hhhhhh-hccCCChh---hhhhHhhhchhhhcccCCceEEEEEeeccc-------cHHHHHHHHHHHhhc
Q 008384 352 ILPFGDQ---FWFRFL-FGWMMPPK---VSLLKATQGEAIRNYYHQNHVIQDMLVPLY-------KVGDALEWQHREVEV 417 (567)
Q Consensus 352 ~~p~~~~---~~~R~l-~~~~~~~~---~~~~~~~~~~~i~~~~~~~~viqDv~VP~~-------~l~e~l~~l~~~~~~ 417 (567)
+-+.... .+.+.. ..|..... =+.++.+.+.. ..++++.+++||.+ +..++|++|++++++
T Consensus 338 ~~~l~~~~~~~in~~~~~~~~~s~~~~v~~S~~vf~~~~-----~f~q~~~EyaiP~e~~~~~~~~~~~~l~el~~~i~~ 412 (541)
T TIGR01676 338 LDPLNKEHVIEINKAEAEFWRKSEGYKVGWSDEILGFDC-----GGHQWVSETCFPAGTLAKPNMKDIEYIEELKQLIEK 412 (541)
T ss_pred CCcccchhHHHHHHHHHHHhhcCCceEeCcHHHhcCccc-----ccceEEEEEEEecccccccccchHHHHHHHHHHHHh
Confidence 0000000 111110 01111111 02223333211 13467889999999 559999999999876
Q ss_pred C-CceeeeeEEecCCCCccCCCCCCCCCCcCCCCCCCC----ceeEEEEeecCCC-CCC-CCCccchhHHH---HHHHHH
Q 008384 418 Y-PLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYA----QMYTDVGVYYAPG-PIL-RGEVFDGAEAV---RKMEQW 487 (567)
Q Consensus 418 ~-P~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~n~g~~~~~~-~~~-~~~~~~~~~~~---r~lE~~ 487 (567)
. ..-.+||+.|.+. +|..| |||..+. + .+||+|..|- |. +.. |++ =...++ +..|++
T Consensus 413 ~~~~~~fPiEvR~ta------~Dd~~-LSpa~~r---~~~~~s~~I~v~~y~-~~~~~~~~~~--~~~~~f~~~~~~e~i 479 (541)
T TIGR01676 413 ENIPAPAPIEQRWTA------CSKSP-MSPASSS---ADDDIFSWVGIIMYL-PTMDARQRKE--ITEEFFHYRHLTQAL 479 (541)
T ss_pred cCCCCCCCeEEEeec------CCCcc-cCCccCC---CCCCceEEEEEEecC-CCCChhhhhh--hHHHHHhhhHHHHHH
Confidence 4 7778899999873 44444 4654332 3 4899999997 43 110 000 012566 677888
Q ss_pred HHHc-CCcccccccccC-CHHH-------HHhhCChhHHHHHHHhCCCCCCCccchhh
Q 008384 488 LIEN-GGFQPQYAVSEL-SEKN-------FWRMFDADLYEKCRKKYKAVGTFMSVYYK 536 (567)
Q Consensus 488 v~~~-gG~k~Lya~~y~-t~~e-------f~~~y~~~~y~~lr~kydp~~~f~~~y~k 536 (567)
+.+. ||++++-+.+.+ +.++ |.++||-+.|.++|+++||+|.|.|-|-+
T Consensus 480 ~~~~ygGRPHWgK~h~~~~~~~l~~~yprl~~~YP~d~F~~~R~~lDP~g~F~N~yL~ 537 (541)
T TIGR01676 480 LWDHFSAFEHWAKIEVPKDKDELAALQARLKKKFPVDASNKARKALDPNKILSNNKLE 537 (541)
T ss_pred HHHhcCCccCcceecCCCCHHHHHHHHHHHHhhCCHHHHHHHHHHhCCCCccccHHHH
Confidence 8888 999999999999 9999 88888878999999999999999998854
No 5
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=100.00 E-value=2.9e-41 Score=370.80 Aligned_cols=455 Identities=14% Similarity=0.125 Sum_probs=295.0
Q ss_pred cchhhhhhcccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceee-ccCCCceeeccccCccccCCeEEEEcC
Q 008384 37 VTIYFLIYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVC-TARKPWIAVGMRNVDYKRARHFEVDLS 112 (567)
Q Consensus 37 ~~~~~~~~~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~-~~~~~~~~~G~~~~~~~~~~givIdls 112 (567)
+.--.+..|+| |+...++.|. .|.++++|+++++.+++++. ...++ |++|++..+..+.. .++|++|||+
T Consensus 13 ~~~~~~~~w~n-Wag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~--~v~v~GG~gHs~~~~a~t~~---~~ggvvIdL~ 86 (557)
T TIGR01677 13 ANCTVSNAYGA-FPDRSTCRAANVAYPKTEAELVSVVAAATAAGR--KMKVVTRYSHSIPKLACPDG---SDGALLISTK 86 (557)
T ss_pred CCceeecchhh-cCCcccCCCCEEEecCCHHHHHHHHHHHHHCCC--eEEEEeCCCCCcCcccccCC---CCCEEEEEcc
Confidence 33345667899 9999988887 78889999999998888763 33334 45665532221111 1247999999
Q ss_pred CCCCceEEeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCC-cccCcccceEEEEEEEEe
Q 008384 113 AFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSS-HIYGLFSDTVVAYEIVLA 191 (567)
Q Consensus 113 ~l~~il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s-~~~G~~~d~V~~~evV~a 191 (567)
+||+|+++|.++++|+|+||+++.+|.+.|.++|+.+++.|.+..+||||++++|+.|+.. .++|.++|+|++++||++
T Consensus 87 ~Ln~il~iD~~~~tVtV~AG~~l~~L~~~L~~~Glal~~~~~~~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a 166 (557)
T TIGR01677 87 RLNHVVAVDATAMTVTVESGMSLRELIVEAEKAGLALPYAPYWWGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVP 166 (557)
T ss_pred cCCCCEEEeCCCCEEEECCCCcHHHHHHHHHHcCCEeccCCCCCCeEeeEhhhCCCCCccccccccchhheEEEEEEEeC
Confidence 9999889999999999999999999999999999999998888899999999654444333 488999999999999999
Q ss_pred cC------eEEEEcCCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCc
Q 008384 192 DG------QVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQD 265 (567)
Q Consensus 192 dG------~vv~~s~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (567)
|| ++++++++ +++|||||++||+|+|||||++|||+.|.+. ...++. ....+++.+.+.+...
T Consensus 167 ~G~a~G~~~v~~~s~~-~~~dLf~a~rgslG~lGVVtevTL~~~P~~~-~~~~~~--~~~~~~l~~~~~~~~~------- 235 (557)
T TIGR01677 167 ASAAEGFAKVRILSEG-DTPNEFNAAKVSLGVLGVISQVTLALQPMFK-RSVTYT--MRDDSDFEDQFVTFGK------- 235 (557)
T ss_pred CCcccCcceEEEeCCC-CCHHHHHhhccCCCccEeeeEEEEEEEcccc-ceEEEE--cCCHHHHHHHHHHhhc-------
Confidence 98 89999986 8999999999999999999999999999977 333443 3457777776766631
Q ss_pred CCCCccceEEEEEecCCceEEEEeec-CChHHhhhcccccccccccccchhhHHHhhhhhcCcccccccccccccccCcc
Q 008384 266 NQAKVPDFVEGMIYTSTEAVFMTGRY-ASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRS 344 (567)
Q Consensus 266 ~~~~~~~~vd~~~~~~~~~v~~~g~~-~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~ 344 (567)
..++.+++|++....+++.... ++.... ....+.+-...+.+.-....... .. ++.+.+ +...+
T Consensus 236 ----~~~~~~f~w~P~~~~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~-~~~~~ 300 (557)
T TIGR01677 236 ----KHEFADITWYPSQGKAVYRRDDRVPVNAS---GNGVNDFLGFRSTLIAAIAGIRA----LE---ETFERS-RNANG 300 (557)
T ss_pred ----CCeEEEEEEECCCCeEEEEecCcCCCCCC---cchhhhhccccccchhhhhhhhh----hh---HHHhhh-ccccc
Confidence 2478888888876555543322 221100 00000000000000000000000 00 000000 00000
Q ss_pred eeeccccccccCchhhh--------hhhhccCCChhhhhhHhhhc-------------hhhhccc--C-CceEEEEEeec
Q 008384 345 LYWEGKLILPFGDQFWF--------RFLFGWMMPPKVSLLKATQG-------------EAIRNYY--H-QNHVIQDMLVP 400 (567)
Q Consensus 345 ~fw~~~~~~p~~~~~~~--------R~l~~~~~~~~~~~~~~~~~-------------~~i~~~~--~-~~~viqDv~VP 400 (567)
.-+.+.. .|.....+. +.+...-. .. +.++.+.. .+..... . ..+.-.+++||
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~g-~s~~v~~~~~c~~~~~~~~~~~~~~~~~~~~~~~f~e~EyavP 377 (557)
T TIGR01677 301 KCVTATI-TSAALFLPGYGLTNSGGIIFTGYPV-VG-SQGRMQTSGSCLDSPQDGLLTACAWDPRYKGLFFFHQTTLSVP 377 (557)
T ss_pred ceecccc-ccchhhhhcccccccccccccCCce-ec-chHhhcccccccccccccccccCccccccccccceeEEEEEee
Confidence 0000000 000000000 00000000 00 01111110 0000000 0 00223499999
Q ss_pred cccHHHHHHHHHHHhhcCCce------eeeeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCc
Q 008384 401 LYKVGDALEWQHREVEVYPLW------LCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEV 474 (567)
Q Consensus 401 ~~~l~e~l~~l~~~~~~~P~w------lcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~ 474 (567)
+++++++|++++++++..|-- ..||.+|.+ ++|+.|. |+ + .+.+||+|-.|. +.+.+....
T Consensus 378 ~e~~~~al~~vr~~~~~~~~~~~~~~~~fpievR~v------~aDd~wL-Sp--~---rds~~i~~~~~~-~~~~~~~~~ 444 (557)
T TIGR01677 378 VSRFRDFVLDVKRLRDMEPKSLCGVELYNGILIRYV------KASPAYL-GK--E---EDAVDFDFTYYR-AKDPLTPRL 444 (557)
T ss_pred HHHHHHHHHHHHHHHHhcccccCceeeecCeEEEEe------cCCcccc-CC--C---CceEEEEEEEec-CCCCcccch
Confidence 999999999999999877533 347778887 3566554 55 2 368999999987 322111011
Q ss_pred cchhHHHHHHHHH-HHHcCCcccccccccCCHHHHHhhCCh-hHHHHHHHhCCCCCCCccchhhhccCc
Q 008384 475 FDGAEAVRKMEQW-LIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYKSKKGR 541 (567)
Q Consensus 475 ~~~~~~~r~lE~~-v~~~gG~k~Lya~~y~t~~ef~~~y~~-~~y~~lr~kydp~~~f~~~y~k~~~~~ 541 (567)
+ ..+++.+|++ +.++|||+++-+.+.++.+++.++||+ +.|.+||+++||++.|.|-|-+-....
T Consensus 445 ~--~~~f~~~E~i~l~~yggRPHWGK~h~~~~~~l~~~YP~~~dF~alR~~~DP~g~F~N~yl~~l~~~ 511 (557)
T TIGR01677 445 Y--EDVIEEIEQMAFFKYGALPHWGKNRNLAFDGVIRKYPNADKFLKVKDSYDPKGLFSSEWSDEILGI 511 (557)
T ss_pred H--HHHHHHHHHHHHhhcCCCCCccccccchHHHHHHhCCCHHHHHHHHHhcCCCCccCCHHHHHHhCc
Confidence 2 6799999997 999999999999999999999999998 899999999999999999987744443
No 6
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=100.00 E-value=3.1e-41 Score=368.66 Aligned_cols=447 Identities=15% Similarity=0.126 Sum_probs=301.2
Q ss_pred hhcccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceE
Q 008384 43 IYLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD 119 (567)
Q Consensus 43 ~~~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~ 119 (567)
..++| |+....+.|. .|.+.++|+++++.+++.+. .+.++|+||++. +...+++.+|||++||+|++
T Consensus 84 ~~~~N-Wsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~--~VrvvGsGhS~~-------~l~~td~glIdL~~l~~Il~ 153 (573)
T PLN02465 84 HTVSN-WSGTHEVQTRRYHQPESLEELEDIVKEAHEKGR--RIRPVGSGLSPN-------GLAFSREGMVNLALMDKVLE 153 (573)
T ss_pred hhccc-cccccCCCCCEEEEeCCHHHHHHHHHHHHHcCC--cEEEEcCCcCCC-------CeeeCCCEEEECcCCCCcEE
Confidence 46889 9998888887 77788888888888777663 445566666542 22234455789999999999
Q ss_pred EeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEc
Q 008384 120 IDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (567)
Q Consensus 120 id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s 199 (567)
+|+++++|+|+||+++.+|.+.|.++|++++..+++..+||||+++ +|.|+++.++|.++|+|++++||+++|++++++
T Consensus 154 vD~e~~~VtV~AG~~l~~L~~~L~~~GLal~n~g~I~~~TIGGaIs-tGtHGtG~~~g~i~d~V~~l~lVta~G~vv~~s 232 (573)
T PLN02465 154 VDKEKKRVTVQAGARVQQVVEALRPHGLTLQNYASIREQQIGGFIQ-VGAHGTGARIPPIDEQVVSMKLVTPAKGTIELS 232 (573)
T ss_pred EeCCCCEEEEccCCCHHHHHHHHHHcCCEeccCCCCCCeeecchhh-CCCCCcCCCcCcHhheEEEEEEEECCCCEEEEC
Confidence 9999999999999999999999999999999888999999999996 577888889999999999999999999999999
Q ss_pred CCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEe
Q 008384 200 KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIY 279 (567)
Q Consensus 200 ~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~ 279 (567)
++ +++|||++.++|.|+|||||++||+++|.+.+...++. .+++++.+.+.++.. .+++++++||
T Consensus 233 ~~-~~pdLF~aar~glG~lGVIteVTLql~P~~~L~~~~~~---~~~~~~~~~~~~~~~-----------~~~h~~f~wf 297 (573)
T PLN02465 233 KE-DDPELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTFV---SNRKEIKKNHKKWLS-----------ENKHIRYMWI 297 (573)
T ss_pred CC-CCHHHHhHhhccCCCCcEEEEEEEEEEecCceEEEEEE---ecHHHHHHHHHHHHH-----------hCcccceeec
Confidence 86 88999999999999999999999999999987655554 357888888887742 2578899998
Q ss_pred cCCceEEEEeecCChHHhhhcccccccccccccchhhHHHhhhhh--cCccccccc------ccccccccCcceeecccc
Q 008384 280 TSTEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALK--RGEFTEYIP------TREYYHRHTRSLYWEGKL 351 (567)
Q Consensus 280 ~~~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~--~~~~~e~~p------~~dy~~r~~r~~fw~~~~ 351 (567)
+....+++.-.....+...+ ..... .+...-...+.....+ .+...+-++ +.....+.- ..|...
T Consensus 298 P~td~~~v~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~- 370 (573)
T PLN02465 298 PYTDTVVVVTCNPLSKWKEP--PKIKP--KYSEDERVQPLRDLYKESAGTKSSENPEPDIQEMGFGELRDK--LLALDP- 370 (573)
T ss_pred CCcceEEEEeCCCCCCccCC--ccccc--ccchhhhhhhhhhhhhhhccccccccccccccccchHHHHHH--HhhcCc-
Confidence 88766655443321111000 00000 0000000000000000 000000000 000000000 000000
Q ss_pred ccccCchhhhhhh-hccCCChh---hhhhHhhhchhhhcccCCceEEEEEeeccc-------cHHHHHHHHHHHhhcC-C
Q 008384 352 ILPFGDQFWFRFL-FGWMMPPK---VSLLKATQGEAIRNYYHQNHVIQDMLVPLY-------KVGDALEWQHREVEVY-P 419 (567)
Q Consensus 352 ~~p~~~~~~~R~l-~~~~~~~~---~~~~~~~~~~~i~~~~~~~~viqDv~VP~~-------~l~e~l~~l~~~~~~~-P 419 (567)
+.|--...+.+.. ..|..... =+.++.+.+.. ..++++.+++||.+ +..++|++|++++++. .
T Consensus 371 l~p~~~~~vn~~~~~~~~~s~~~~v~~S~~if~~~~-----~~~q~~~EyaiP~~~~~~~~~~~~~~l~el~~~i~~~~~ 445 (573)
T PLN02465 371 LDPDHVKRVNAAEAEFWRRSEGYRVGWSDEILGFDC-----GGQQWVSEVCFPAGTLAKPSMKDLEFMEELLALIEKEGI 445 (573)
T ss_pred cchhhhHHHHHHHHHHhhcCCCcEeCcHHHhcCccc-----cceeEEEEEEEeccccccccccHHHHHHHHHHHHHhcCC
Confidence 0000000111110 00111111 01222222111 13467889999999 5559999999998764 6
Q ss_pred ceeeeeEEecCCCCccCCCCCCCCCCcCCC-CCCCCceeEEEEeecCCCCC-C-CC---CccchhHHH-HHHHHHHHHcC
Q 008384 420 LWLCPHRLYKLPYKTMVYPEPGFEHHRRQG-DTSYAQMYTDVGVYYAPGPI-L-RG---EVFDGAEAV-RKMEQWLIENG 492 (567)
Q Consensus 420 ~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~g~~~~~~~~-~-~~---~~~~~~~~~-r~lE~~v~~~g 492 (567)
.-.+||++|.+. +|..| |||..+ ..+.+.+||+|..|- |.+. . |+ +.| ..+. +.+|+++.++|
T Consensus 446 ~~~fPiE~R~ta------~dd~~-LSpa~~~~~d~~s~~I~i~~Y~-~~~~~~~~~~~~~~~--~~yf~~~~e~i~~~yg 515 (573)
T PLN02465 446 PAPAPIEQRWTA------SSSSP-MSPASSPSPDDLHSWVGIIMYL-PTEDERQRKEITEEF--FHYRKKTQRNLWDKYS 515 (573)
T ss_pred CCCCceEEEeec------CCccc-cCcccCCCCCCceEEEEEEecc-CCChhhhhhhhhHHH--HHHHHHHHHHHHHHcC
Confidence 777899999874 34444 455333 111248999999997 4431 0 00 112 4677 99999999999
Q ss_pred Cccccccccc--------CCHHHHHhhCChhHHHHHHHhCCCCCCCccchhhh
Q 008384 493 GFQPQYAVSE--------LSEKNFWRMFDADLYEKCRKKYKAVGTFMSVYYKS 537 (567)
Q Consensus 493 G~k~Lya~~y--------~t~~ef~~~y~~~~y~~lr~kydp~~~f~~~y~k~ 537 (567)
|++++-+.+. ++.+++.++||-+.|.++|+++||+|.|.|-|-+-
T Consensus 516 gRPHWgK~h~~~~~~~~~~~~~~L~~~YP~d~F~~~R~~lDP~g~f~N~~L~~ 568 (573)
T PLN02465 516 AYEHWAKIEVPKDKEELEALRERLRKRFPVDAFNKARKELDPKGILSNNLLEK 568 (573)
T ss_pred CCcccceeccccccchhhcCHHHHHhhCCHHHHHHHHHHhCCCCccCCHHHHH
Confidence 9999999999 99999999999889999999999999999988653
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=3.2e-36 Score=327.30 Aligned_cols=436 Identities=14% Similarity=0.172 Sum_probs=275.2
Q ss_pred hcccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCC----
Q 008384 44 YLGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRN---- 116 (567)
Q Consensus 44 ~~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~---- 116 (567)
+.+| |.....+.|+ .|.++++|+++++.+++....-.+.++|+||++. |.+. .++|++|||++||+
T Consensus 53 ~s~d-~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~--G~a~----~~~GivIdms~Ln~i~~~ 125 (525)
T PLN02441 53 ASKD-FGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLN--GQAQ----APGGVVVDMRSLRGGVRG 125 (525)
T ss_pred HhcC-cccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCC--CCcc----CCCeEEEECCCCCCcCcc
Confidence 3567 7666666776 6777777777777776322112345678888654 2222 24799999999999
Q ss_pred --ceEEeCCCcEEEEcCCCcHHHHHHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCe
Q 008384 117 --ILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQ 194 (567)
Q Consensus 117 --il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~ 194 (567)
++++|.++.+|+|++|++|.++.+++.++|+++++.+.+..+||||+++++|+|+.+++||.++|+|++++||+++|+
T Consensus 126 ~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGe 205 (525)
T PLN02441 126 PPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGE 205 (525)
T ss_pred CceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCce
Confidence 678999999999999999999999999999998887888999999999988999999999999999999999999999
Q ss_pred EEEEcCCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceE
Q 008384 195 VVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFV 274 (567)
Q Consensus 195 vv~~s~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 274 (567)
+++|+++ +|+|||||++||+|+|||||+++|+++|+++.+..... .+.+++++.+...++... . .....+++
T Consensus 206 vv~~s~~-~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~-~y~~~~~~~~d~~~li~~-~-----~~~~~d~v 277 (525)
T PLN02441 206 VVTCSPT-QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRV-LYSDFSTFTRDQERLISR-P-----PENSFDYV 277 (525)
T ss_pred EEEeCCC-CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEE-EcCCHHHHHHHHHHHHhc-C-----CCCCcceE
Confidence 9999986 89999999999999999999999999999985432222 356788888887776530 0 11236999
Q ss_pred EEEEecC-CceEEEEee-cCChHHhhhcccccccccccccchhhHH-HhhhhhcCcccccccccccc---cccCcceeec
Q 008384 275 EGMIYTS-TEAVFMTGR-YASKEEAKKKGNVINSVGWWFKPWFYQH-AATALKRGEFTEYIPTREYY---HRHTRSLYWE 348 (567)
Q Consensus 275 d~~~~~~-~~~v~~~g~-~~~~~~~~~~~~~~~~~~~~~~p~fy~~-~~~~~~~~~~~e~~p~~dy~---~r~~r~~fw~ 348 (567)
|++++.. ...+...-. +-+..+..+. ..+..-+ .|+|.. +-..-........-+-.+.+ .++..+..+.
T Consensus 278 eg~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~y~le~~~~~~~~~~~~~~~~~~~ll~~L~~~~~~~~~ 352 (525)
T PLN02441 278 EGFVIVNRNGLINNWRSSFFSPSDPVRA-SSLPSDG----GVLYCLEVAKYYDEDTSDTVDQEVESLLKRLSFIPGLLFT 352 (525)
T ss_pred eEEEEeCCCCceeeeecccCCccccchh-hccccCC----ceEEEEEEEEeeCCCCccchhhHHHHHHhhcCCCCCCcee
Confidence 9999987 333322211 1111111110 0010000 122211 00000000000000000000 0000000000
Q ss_pred cccccccCchhhhhhhhccCCChhhhhhHhhhchhhhcccCCceEEEEEeeccccHHHHHHHHHHHh-hc---CCceeee
Q 008384 349 GKLILPFGDQFWFRFLFGWMMPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREV-EV---YPLWLCP 424 (567)
Q Consensus 349 ~~~~~p~~~~~~~R~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~viqDv~VP~~~l~e~l~~l~~~~-~~---~P~wlcp 424 (567)
.. ...+.. +++.-.... . +...|+ ....+-=-+++||-+++.+|.+.+-+.+ .. -|+-++|
T Consensus 353 ~d-------~~y~~f-l~rv~~~e~-~---lr~~G~---W~~phPWlnlfvp~s~i~~f~~~v~~~i~~~~~~G~~liyP 417 (525)
T PLN02441 353 TD-------VSYVDF-LDRVHVEEL-K---LRSKGL---WEVPHPWLNLFVPKSRIADFDDGVFKGILLDGTNGPILVYP 417 (525)
T ss_pred cc-------cCHHHH-HHhhhhHHH-H---HhhcCC---cCCCCchhheeCcHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 00 000000 000000000 0 011111 1111222389999999999999887754 22 6999999
Q ss_pred eEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHHHcCC--ccccccccc
Q 008384 425 HRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGG--FQPQYAVSE 502 (567)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~~~gG--~k~Lya~~y 502 (567)
+....- .++.... .|. ++.+.=|++.....| .......-.+.||+|=++..+.|+ ++||.. |
T Consensus 418 ~~~~~~-------~~~~s~~--~P~----~~~~y~v~~l~~~~p-~~~~~~~~~~~n~~i~~~~~~~g~~~k~Yl~~--~ 481 (525)
T PLN02441 418 LNRSKW-------DNRTSAV--IPD----EDIFYLVALLRSALP-SGDDLEHLLAQNKEILRFCEKAGIGVKQYLPH--Y 481 (525)
T ss_pred cccccC-------CCCCccc--cCC----CCeEEEEEEcCCCCC-CcccHHHHHHHHHHHHHHHHHcCCceEEcCCC--C
Confidence 976532 1121111 121 255666777653211 111223347899999999999898 677764 4
Q ss_pred CCHHHHHhhCCh--hHHHHHHHhCCCCCCC
Q 008384 503 LSEKNFWRMFDA--DLYEKCRKKYKAVGTF 530 (567)
Q Consensus 503 ~t~~ef~~~y~~--~~y~~lr~kydp~~~f 530 (567)
.|.+++.+-|+. +.|.+.|++|||...|
T Consensus 482 ~~~~~W~~HfG~~w~~f~~~K~~yDP~~iL 511 (525)
T PLN02441 482 TTQEEWKRHFGPKWETFVRRKAKFDPLAIL 511 (525)
T ss_pred CCHHHHHHHhcchHHHHHHHHhhCCchhhc
Confidence 899999999975 6999999999999777
No 8
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=1.2e-32 Score=303.49 Aligned_cols=383 Identities=15% Similarity=0.154 Sum_probs=248.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
.|.+.++|+++++++++++. ..+++|+++++. |++. ..++|++|||++||+|+++|+++++|+||||+++.+|
T Consensus 139 ~P~s~eeV~~ivk~a~~~~i--pv~prGgGts~~--G~~~---~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L 211 (555)
T PLN02805 139 FPRSEEEVSKIVKSCNKYKV--PIVPYGGATSIE--GHTL---APHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLEL 211 (555)
T ss_pred EcCCHHHHHHHHHHHHHCCC--cEEEECCCCCCC--CCcc---CCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHH
Confidence 78999999999999998875 344556666543 2211 1357999999999999999999999999999999999
Q ss_pred HHHHccCCceeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCC----CCChhhhhhcccc
Q 008384 139 SRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD----NEYKDLFYAIPWS 214 (567)
Q Consensus 139 ~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~----~~~~dLf~a~~gs 214 (567)
+++|.++|+++|+.|+ +.+||||++++++.|..+.+||.++|+|++++||++||++++++.. ..++||+|+++||
T Consensus 212 ~~~L~~~Gl~~p~~p~-~~~TIGG~ia~n~~G~~s~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~Gs 290 (555)
T PLN02805 212 NEYLEPYGLFFPLDPG-PGATIGGMCATRCSGSLAVRYGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGS 290 (555)
T ss_pred HHHHHHcCCEeCCCCc-cccChhhHhhCCCcccccCccccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccC
Confidence 9999999999998876 5789999998888888899999999999999999999999987432 2468999999999
Q ss_pred CCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEec-------------C
Q 008384 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYT-------------S 281 (567)
Q Consensus 215 ~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-------------~ 281 (567)
+|+|||||+++||+.|.|+....... .|.+++++.+++.+....+ ..|..+|.+... +
T Consensus 291 eGtLGIIT~~tlrl~p~P~~~~~~~~-~f~~~~~a~~av~~i~~~g--------~~psa~ElmD~~~~~~~~~~~~~~~p 361 (555)
T PLN02805 291 EGTLGVITEVTLRLQKIPQHSVVAMC-NFPTIKDAADVAIATMLSG--------IQVSRVELLDEVQIRAINMANGKNLP 361 (555)
T ss_pred CCceEEEEEEEEEeecCCcceEEEEE-EcCCHHHHHHHHHHHHhCC--------CCcEEEEEECHHHHHHHHHhcCCCCC
Confidence 99999999999999999986544443 4788999988887764211 123444444221 0
Q ss_pred CceEEEEeecCChHHhhhcccccccccccccchhhHHHhhhhhcCcccccccccccccccCcceeeccccccccCchhhh
Q 008384 282 TEAVFMTGRYASKEEAKKKGNVINSVGWWFKPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWF 361 (567)
Q Consensus 282 ~~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~ 361 (567)
....++.....+.++...+ . ..+... ..++....++..+ +....
T Consensus 362 ~~~~Ll~e~~g~~~~~~~~--------------~-~~~~~i---------------~~~~g~~~~~~a~-----~~~e~- 405 (555)
T PLN02805 362 EAPTLMFEFIGTEAYAREQ--------------T-LIVQKI---------------ASKHNGSDFVFAE-----EPEAK- 405 (555)
T ss_pred cceEEEEEEecCcHHHHHH--------------H-HHHHHH---------------HHhCCCceEEEeC-----CHHHH-
Confidence 1122222212211111000 0 000000 0001100111110 00000
Q ss_pred hhhhccCCChhhhhhHhhhchhhhcccC-CceEEEEEeeccccHHHHHHHHHHHhhcCCceeeeeEEecCCCCccCCCCC
Q 008384 362 RFLFGWMMPPKVSLLKATQGEAIRNYYH-QNHVIQDMLVPLYKVGDALEWQHREVEVYPLWLCPHRLYKLPYKTMVYPEP 440 (567)
Q Consensus 362 R~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~viqDv~VP~~~l~e~l~~l~~~~~~~P~wlcp~~~~~~~~~~~~~~~~ 440 (567)
.++|.+|.....++.+..+ ...+++|++||+++++++++.++++++++++-.|-+ .+.
T Consensus 406 ---------~~lW~~R~~~~~~~~~~~~~~~~~~~DvaVP~s~L~e~i~~~~~~~~~~~~~~~~~--gHa---------- 464 (555)
T PLN02805 406 ---------KELWKIRKEALWACFAMEPKYEAMITDVCVPLSHLAELISRSKKELDASPLVCTVI--AHA---------- 464 (555)
T ss_pred ---------HHHHHHHHHHHHHHhhcCCCCceeEEEEEEEHHHHHHHHHHHHHHHHHcCCeEEEE--EEc----------
Confidence 1234444433333322221 234789999999999999999999999997433222 111
Q ss_pred CCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHHHcCCcc-cccccccCCHHHHHhhCCh---hH
Q 008384 441 GFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQ-PQYAVSELSEKNFWRMFDA---DL 516 (567)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k-~Lya~~y~t~~ef~~~y~~---~~ 516 (567)
..| .+.+++ ++. +.. .++.....+..+++-+.+.++||.= -=..--..-.+-+.+.|+. ..
T Consensus 465 ------GdG-----nlH~~i-~~~-~~~--~~~~~~~~~~~~~i~~~~~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~l 529 (555)
T PLN02805 465 ------GDG-----NFHTII-LFD-PSQ--EDQRREAERLNHFMVHTALSMEGTCTGEHGVGTGKMKYLEKELGIEALQT 529 (555)
T ss_pred ------CCC-----cEEEEe-ccC-CCC--HHHHHHHHHHHHHHHHHHHHcCCeEeEECCCChhHHHHHHHhcCHHHHHH
Confidence 012 334454 232 211 1111122457788888899999952 1111122234445566663 58
Q ss_pred HHHHHHhCCCCCCC
Q 008384 517 YEKCRKKYKAVGTF 530 (567)
Q Consensus 517 y~~lr~kydp~~~f 530 (567)
+.++|+-+||++.|
T Consensus 530 m~~IK~a~DP~gIL 543 (555)
T PLN02805 530 MKRIKKALDPNNIM 543 (555)
T ss_pred HHHHHHHhCcCcCC
Confidence 89999999999755
No 9
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=4.7e-31 Score=288.97 Aligned_cols=191 Identities=21% Similarity=0.222 Sum_probs=161.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
.|.+.++|+++++++++.+. ..+.+|++++.. | +..+..+|++|||++||+|+++|+++++|+||||+++.+|
T Consensus 61 ~P~s~eeV~~iv~~a~~~~i--pv~~rG~Gt~~~--g---g~~~~~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L 133 (499)
T PRK11230 61 LPKQMEQVQALLAVCHRLRV--PVVARGAGTGLS--G---GALPLEKGVLLVMARFNRILDINPVGRRARVQPGVRNLAI 133 (499)
T ss_pred eeCCHHHHHHHHHHHHHcCC--eEEEECCCcCcC--C---CcccCCCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHH
Confidence 89999999999999998774 234455555331 1 1122357899999999999999999999999999999999
Q ss_pred HHHHccCCceeeecCC-CCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCC---CCChhhhhhcccc
Q 008384 139 SRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD---NEYKDLFYAIPWS 214 (567)
Q Consensus 139 ~~~l~~~Gl~~~~~p~-~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~---~~~~dLf~a~~gs 214 (567)
+++|.++|+.+++.|+ ...+||||+++.++.|+.+.+||.+.|+|++++||++||++++++.. +.++||+|+++||
T Consensus 134 ~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~v~~levVl~~G~i~~~~~~~~~~~g~dl~~l~~Gs 213 (499)
T PRK11230 134 SQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNLLKVEILTLDGEALTLGSDALDSPGFDLLALFTGS 213 (499)
T ss_pred HHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhheeEEEEEcCCCcEEEeCCccCCCCccchHhhhccC
Confidence 9999999999887784 56799999998777778899999999999999999999999998753 2488999999999
Q ss_pred CCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHh
Q 008384 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (567)
Q Consensus 215 ~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
+|+|||||++|||+.|.|+....... .|.+.+++.+++.++.
T Consensus 214 ~GtlGIIt~atlkl~p~p~~~~~~~~-~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 214 EGMLGVVTEVTVKLLPKPPVARVLLA-SFDSVEKAGLAVGDII 255 (499)
T ss_pred CCccEEEEEEEEEEEcCCcceEEEEE-ECCCHHHHHHHHHHHH
Confidence 99999999999999999986543333 4788999988887764
No 10
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=99.98 E-value=7e-31 Score=286.18 Aligned_cols=405 Identities=19% Similarity=0.175 Sum_probs=253.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHH
Q 008384 58 RQKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQ 137 (567)
Q Consensus 58 a~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~ 137 (567)
..|.++++|++++++|.+++. .++++|+++++. |.... . +|++|||++||+|+++|+++++|+||||+++.+
T Consensus 36 ~~p~s~~eV~~iv~~a~~~~~--~v~prG~gts~~--g~~~~---~-~gvvl~l~~mn~i~~id~~~~~~~v~aGv~l~~ 107 (459)
T COG0277 36 VFPKSEEEVAAILRLANENGI--PVVPRGGGTSLS--GGAVP---D-GGVVLDLSRLNRILEIDPEDGTATVQAGVTLED 107 (459)
T ss_pred EccCCHHHHHHHHHHHHHcCC--eEEEECCCCCcc--ccccC---C-CcEEEEchhhcchhccCcCCCEEEEcCCccHHH
Confidence 378899999999999999885 356677777543 21111 1 399999999999989999999999999999999
Q ss_pred HHHHHccCCceeeecCCCC-ccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCC----CCChhhhhhcc
Q 008384 138 ISRATCPMNLSLAVVAELD-DLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKD----NEYKDLFYAIP 212 (567)
Q Consensus 138 L~~~l~~~Gl~~~~~p~~~-~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~----~~~~dLf~a~~ 212 (567)
|.++|.++|+++|++|+.. .+||||++++++.|..+.+||.++|+|+++++|++||++++++.. ..+.||+.++.
T Consensus 108 l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~vV~~dG~i~~~~~~~~k~~~g~dl~~l~i 187 (459)
T COG0277 108 LEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRVVLPDGEILRLGRKLRKDNAGYDLTALFV 187 (459)
T ss_pred HHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEEEcCCceehhhcCcccCCCCCCCHHHhcc
Confidence 9999999999999999876 999999999888888999999999999999999999999998873 46789999999
Q ss_pred ccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhCCCCCCCcCCCCccceEEEEEecCCce--EEEEee
Q 008384 213 WSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFAPRDGDQDNQAKVPDFVEGMIYTSTEA--VFMTGR 290 (567)
Q Consensus 213 gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~--v~~~g~ 290 (567)
||+|+|||||++||++.|.++........ +.+.+............. .. ....+..++.+.-. ... ....+.
T Consensus 188 Gs~GtlGiit~~tl~l~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~e~~~~~-~~~~~~~~~~~ 261 (459)
T COG0277 188 GSEGTLGIITEATLKLLPLPETKATAVAG-FPSIEAAARLAVAAIALL-EA---LGVIPAALEFMDRP-IKAAEAYLGGG 261 (459)
T ss_pred cCCccceEEEEEEEEeccCCchheEEEEe-CCCHHHHHHHHHHHHHhh-hh---cCCCceeeeecchh-HHHHHHhcccc
Confidence 99999999999999999998755444432 344444433211111000 00 00011222222110 000 000000
Q ss_pred -cCChHHhhhcccccccccccc-cchhhHHHhhhhhcCcccccccccccccccCcceeeccccccccCchhhhhhhhccC
Q 008384 291 -YASKEEAKKKGNVINSVGWWF-KPWFYQHAATALKRGEFTEYIPTREYYHRHTRSLYWEGKLILPFGDQFWFRFLFGWM 368 (567)
Q Consensus 291 -~~~~~~~~~~~~~~~~~~~~~-~p~fy~~~~~~~~~~~~~e~~p~~dy~~r~~r~~fw~~~~~~p~~~~~~~R~l~~~~ 368 (567)
.....+ ...+....... ...... .+. ..+ ....+. .++... ........
T Consensus 262 ~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~------~~~------~~~~~~--~~~~~~--~~~~~~~~-------- 312 (459)
T COG0277 262 ALPLEAP----ARLLVEVEGSDEAAVDEA-LEA------LGE------LLLEHG--LARDLV--VAQDLAEA-------- 312 (459)
T ss_pred CCCCCCc----eEEEEEEcCCcHHHHHHH-HHH------HHH------HHHhcC--CceeEE--EeCCHHHH--------
Confidence 000000 00000000000 000000 000 000 000000 000000 00000001
Q ss_pred CChhhhhhHhhhchhhhcccCCceEEEEEeeccccHHHHHHHHHHHhhcCCceeeeeEEecCCCCccCCCCCCCCCCcCC
Q 008384 369 MPPKVSLLKATQGEAIRNYYHQNHVIQDMLVPLYKVGDALEWQHREVEVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQ 448 (567)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~viqDv~VP~~~l~e~l~~l~~~~~~~P~wlcp~~~~~~~~~~~~~~~~~~~~~~~~ 448 (567)
.+.|..+...........+. .+..|+++|.+.+++++..+.+.+..+.+ ..++..+.. .++
T Consensus 313 --~~~~~~r~~~~~~~~~~~~~-~~~~d~~vp~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~~d--------- 373 (459)
T COG0277 313 --ARLWLARKGALAAAGALGPG-VIQEDVVVPLEALPEFLREILALLDKAGL-ALRVALFGH------AGD--------- 373 (459)
T ss_pred --HHHHHHHHHHHHHHHhhCCC-ccccceeeeHHHHHHHHHHHHHHHHhcCC-Cceeeeecc------cCC---------
Confidence 22334443333333322222 56779999999999999999999988864 111111111 011
Q ss_pred CCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHHHcCCcccccccccCCHHHHHhhCCh---hHHHHHHHhCC
Q 008384 449 GDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA---DLYEKCRKKYK 525 (567)
Q Consensus 449 ~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~~~gG~k~Lya~~y~t~~ef~~~y~~---~~y~~lr~kyd 525 (567)
| .+.+++-.... .... ......++++.+++.+.++||..+.+....+++.+|...|.. ..+.++|+.||
T Consensus 374 g-----~~~~~~~~~~~-~~~~--~~~~~~~~~~~i~~~~~~~gG~~~~~h~~g~~~~~~~~~~~~~~~~~~~~~k~~~D 445 (459)
T COG0277 374 G-----NLHLNILYDVG-DEAE--ELARAEALNEAIEALAVELGGSISGEHGIGRTKAEFLELEPGEAWALLRAIKRAFD 445 (459)
T ss_pred C-----cceeeeccCCC-ccHH--HHHHHHHHHHHHHHHHHHhCCeeEEecccchhhHHHHHHHHhHHHHHHHHHHHhcC
Confidence 1 12333332221 0000 112236788999999999999999999999999999999985 68899999999
Q ss_pred CCCCCcc
Q 008384 526 AVGTFMS 532 (567)
Q Consensus 526 p~~~f~~ 532 (567)
|++.|..
T Consensus 446 P~~i~np 452 (459)
T COG0277 446 PNGIFNP 452 (459)
T ss_pred CCCCCCC
Confidence 9998854
No 11
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=99.98 E-value=3.7e-30 Score=276.97 Aligned_cols=191 Identities=25% Similarity=0.242 Sum_probs=160.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
.|.+.++|+++++++++++. ...++|+|+++. |.+ .+.+++++|||++||+|+++|+++.+++||||+++.+|
T Consensus 3 ~P~s~eev~~iv~~a~~~~i--~v~~~G~Gt~~~--g~~---~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l 75 (413)
T TIGR00387 3 FPKNTEQVARILKLCHEHRI--PIVPRGAGTGLS--GGA---LPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLEL 75 (413)
T ss_pred CCCCHHHHHHHHHHHHHcCC--cEEEECCCCCCC--CCc---cCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHH
Confidence 48899999999999999885 334455555432 111 12347999999999999999999999999999999999
Q ss_pred HHHHccCCceeeecCC-CCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcC----CCCChhhhhhccc
Q 008384 139 SRATCPMNLSLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYAIPW 213 (567)
Q Consensus 139 ~~~l~~~Gl~~~~~p~-~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~----~~~~~dLf~a~~g 213 (567)
.++|.++|+++|+.|+ ...+||||++++++.|..+.+||.++|+|++++||++||++++++. ...++||++.+.|
T Consensus 76 ~~~l~~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~G 155 (413)
T TIGR00387 76 EQAVEEHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVG 155 (413)
T ss_pred HHHHHHcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhccc
Confidence 9999999999987775 4578999999877777788999999999999999999999999864 2357899999999
Q ss_pred cCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHh
Q 008384 214 SQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (567)
Q Consensus 214 s~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
|+|+|||||+++||+.|.|+....... .|.+++++++++.++.
T Consensus 156 s~GtlGiit~~~lkl~p~p~~~~~~~~-~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 156 SEGTLGIVTEATLKLLPKPENIVVALA-FFDSIEKAMQAVYDII 198 (413)
T ss_pred CCccceEEEEEEEEeecCCCccEEEEE-ECCCHHHHHHHHHHHH
Confidence 999999999999999999985443332 4688999999887764
No 12
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.97 E-value=3.2e-29 Score=258.01 Aligned_cols=429 Identities=18% Similarity=0.230 Sum_probs=264.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
+|.+++++.+|++.+++++. +.+++|.+| +.+.+.+++|.+|+++.||+++++|++..++|||+|+++.||
T Consensus 55 yP~teaeL~~lVa~A~~a~~--kirvVg~gH-------Sp~~l~ctdg~lisl~~lnkVv~~dpe~~tvTV~aGirlrQL 125 (518)
T KOG4730|consen 55 YPKTEAELVELVAAATEAGK--KIRVVGSGH-------SPSKLVCTDGLLISLDKLNKVVEFDPELKTVTVQAGIRLRQL 125 (518)
T ss_pred CCCCHHHHHHHHHHHHHcCc--eEEEecccC-------CCCcceeccccEEEhhhhccceeeCchhceEEeccCcCHHHH
Confidence 68888888888888888774 455555555 445667888899999999999999999999999999999999
Q ss_pred HHHHccCCceeeecCCCCccchhhhhcccCCCCCCcc-cCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhccccCCC
Q 008384 139 SRATCPMNLSLAVVAELDDLTVGGLINGYGIEGSSHI-YGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGT 217 (567)
Q Consensus 139 ~~~l~~~Gl~~~~~p~~~~~tvGG~i~~gg~g~~s~~-~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs~G~ 217 (567)
++++.+.|+.+|..|....++|||++ ++|.||+|.. |+...+......++.++|.+++++++ .+|++|.|++.|.|.
T Consensus 126 ie~~~~~GlsL~~~~si~e~sVgGii-~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-~dpe~F~AAkvSLG~ 203 (518)
T KOG4730|consen 126 IEELAKLGLSLPNAPSISEQSVGGII-STGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-KDPELFNAAKVSLGV 203 (518)
T ss_pred HHHHHhcCccccCCCceecceeeeEE-ecccCCCccccCcccceeEEEeeeccCCceEEEeccc-CCHHHHhhhhhcccc
Confidence 99999999999999999999999999 5788888877 77777777777777899999999987 899999999999999
Q ss_pred ceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHH-HHhCCCCCCCcCCCCccceEEEEEecCCceEEE-EeecCChH
Q 008384 218 LGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYA-DSFAPRDGDQDNQAKVPDFVEGMIYTSTEAVFM-TGRYASKE 295 (567)
Q Consensus 218 lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~v~~-~g~~~~~~ 295 (567)
||||.++||+++|..+.....+. .+..++...+. .+. ...+|+|.+|++..+.+++ .++-...-
T Consensus 204 LGVIs~VTl~~vp~Fk~s~t~~v---~n~~dl~~d~~~~~~-----------~~~EF~~~~w~Py~~kvV~~~~nrv~~n 269 (518)
T KOG4730|consen 204 LGVISQVTLSVVPAFKRSLTYVV---TNDSDLFKDWKVTLG-----------ESHEFVDVLWYPYTGKVVYRRDNRVPVN 269 (518)
T ss_pred eeEEEEEEEEEEecceeeeEEEE---echHHHHHHHHHHhc-----------ccccceEEEEeccCCeEEEEecCccccc
Confidence 99999999999999885443332 45555554443 221 2368999999987654444 33322111
Q ss_pred HhhhcccccccccccccchhhHHHhhhhh----cCcccccccccccccccC-----cceeeccccccccCchhhhhhhhc
Q 008384 296 EAKKKGNVINSVGWWFKPWFYQHAATALK----RGEFTEYIPTREYYHRHT-----RSLYWEGKLILPFGDQFWFRFLFG 366 (567)
Q Consensus 296 ~~~~~~~~~~~~~~~~~p~fy~~~~~~~~----~~~~~e~~p~~dy~~r~~-----r~~fw~~~~~~p~~~~~~~R~l~~ 366 (567)
.....-.+-.....+.........++... .+.-+....+..|+++-. .+....+. |..+ . -+
T Consensus 270 tg~~~f~p~~~~~s~~~~~~~s~~e~~~~~r~~~~kc~~a~~~tp~l~~~sf~~~~~~~~~t~~---pvig-----~-q~ 340 (518)
T KOG4730|consen 270 TGLPDFKPFRPQPSAVLAKLRSFEESIELFRDANGKCVSADSVTPYLERFSFGLTNGGKLFTGY---PVIG-----V-QG 340 (518)
T ss_pred cCCccccCCCCcHHHHHHHHHHHHHHHHHhhhccCceecCcccchhHHHhhhheecCcEeeecC---cccC-----c-cc
Confidence 00000000000000000000000000000 010000000111221111 11111110 1110 0 00
Q ss_pred cCCChhhhhhHhhhchhhhcccCCc---eEEE--EEeeccccHHHHHHHHHHHhhcCCceee------eeEEecCCCCcc
Q 008384 367 WMMPPKVSLLKATQGEAIRNYYHQN---HVIQ--DMLVPLYKVGDALEWQHREVEVYPLWLC------PHRLYKLPYKTM 435 (567)
Q Consensus 367 ~~~~~~~~~~~~~~~~~i~~~~~~~---~viq--Dv~VP~~~l~e~l~~l~~~~~~~P~wlc------p~~~~~~~~~~~ 435 (567)
..|-. ...+ ..+..+.+-..+.+ ...+ =..+|++....||..+..+..+.|.=+| |+-+|.+.
T Consensus 341 ~~~~s-~sCl-~s~~~g~~~~W~~ri~g~f~~qt~~s~pl~~~~~ai~dik~l~~ie~~~~c~~~~~~pi~iR~~t---- 414 (518)
T KOG4730|consen 341 KMMSS-GSCL-DSQSDGTACEWDPRIKGFFFHQTTFSIPLTAVKDAINDIKDLVKIEPKSLCGLETYNPILIRYVT---- 414 (518)
T ss_pred hhccc-hhhh-hhccCccccCCCccccCchhheeeeccchhhhhhHhhhhhhhcccChhhhhhhhhccceeEEEec----
Confidence 00000 0000 00111111011111 1112 2458999999999999999888888888 66666652
Q ss_pred CCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCCCCCccchhHHHHHHHHHHH-HcCCcccccccccCCHHHHHhhC-C
Q 008384 436 VYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPILRGEVFDGAEAVRKMEQWLI-ENGGFQPQYAVSELSEKNFWRMF-D 513 (567)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~~~~~~~~~~~~r~lE~~v~-~~gG~k~Lya~~y~t~~ef~~~y-~ 513 (567)
+.|.+. -.......-+.||++---|. |-. . .-+ -..++++||++.. +.||.+++-+.--+.-|..-+-| |
T Consensus 415 --~sPayl-~~t~~~~~fd~~Y~~a~dyr-p~~--~-~l~-e~~~~e~lEq~al~kyna~PHWaKn~~lafe~vi~ky~n 486 (518)
T KOG4730|consen 415 --SSPAYL-GKTSEDCDFDTTYYRAKDYR-PLT--P-RLY-EDFYFEELEQIALFKYNAKPHWAKNRNLAFEGVIRKYKN 486 (518)
T ss_pred --CCchhh-ccCcccceeeeeeeeccCCC-cCC--C-Ccc-hhHHHHHHHHHHHHHhcCCcchhhhhhhhHHHHHHhccC
Confidence 234442 11111112234455555443 211 1 111 1249999999998 99999988777655555555666 4
Q ss_pred hhHHHHHHHhCCCCCCCccchh
Q 008384 514 ADLYEKCRKKYKAVGTFMSVYY 535 (567)
Q Consensus 514 ~~~y~~lr~kydp~~~f~~~y~ 535 (567)
-+.|.++|++|||++.|.+=|-
T Consensus 487 ~~~flkvr~~lDP~~lFssew~ 508 (518)
T KOG4730|consen 487 LDKFLKVRKELDPKGLFSSEWT 508 (518)
T ss_pred hHHHHHHHHhcCccchhhhhhH
Confidence 5899999999999999976543
No 13
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=99.94 E-value=3e-26 Score=239.41 Aligned_cols=184 Identities=15% Similarity=0.150 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCC-CceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARK-PWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~ 140 (567)
..++|+++++++++++. ...++|+++ .+. | . ..++++|||++||+|+++|+++.+|+|+||+++.+|.+
T Consensus 3 ~~~ev~~~v~~A~~~~~--~v~~~GgGt~~~~--g-----~-~~~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~ 72 (352)
T PRK11282 3 ISAALLERVRQAAADGT--PLRIRGGGSKDFY--G-----R-ALAGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEA 72 (352)
T ss_pred hHHHHHHHHHHHHHCCC--eEEEECCCCCCCC--C-----C-CCCCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHH
Confidence 46788888888888764 344455543 211 1 1 12567999999999999999999999999999999999
Q ss_pred HHccCCceeeecCC-C-CccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcC----CCCChhhhhhcccc
Q 008384 141 ATCPMNLSLAVVAE-L-DDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK----DNEYKDLFYAIPWS 214 (567)
Q Consensus 141 ~l~~~Gl~~~~~p~-~-~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~----~~~~~dLf~a~~gs 214 (567)
+|.++|+++|..|. . ..+||||++++|+.|..+.+||.++|+|+++++|++||++++++. +..++||||+++||
T Consensus 73 ~L~~~G~~lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs 152 (352)
T PRK11282 73 ALAEAGQMLPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGS 152 (352)
T ss_pred HHHHcCCeeCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhC
Confidence 99999999987663 3 359999999888888888999999999999999999999999864 23578999999999
Q ss_pred CCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHh
Q 008384 215 QGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSF 257 (567)
Q Consensus 215 ~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (567)
+|+|||||++|||++|.|+... ++...+ +.+++++++.++.
T Consensus 153 ~GtLGVitevtlkl~P~p~~~~-t~~~~~-~~~~a~~~~~~~~ 193 (352)
T PRK11282 153 LGTLGVLLEVSLKVLPRPRAEL-TLRLEM-DAAEALRKLNEWG 193 (352)
T ss_pred CchhhhheEEEEEEEecCceEE-EEEEec-CHHHHHHHHHHHh
Confidence 9999999999999999988543 322222 3577778877774
No 14
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.91 E-value=3.8e-24 Score=220.65 Aligned_cols=170 Identities=20% Similarity=0.230 Sum_probs=133.8
Q ss_pred cccC---CCCCHHHHHHHHHHHHhcCCCCC-ceeeccCCCceeeccccCccccCCeEEEEcC---CCCCceEEeCCCcEE
Q 008384 55 YKKR---QKEHDENVKKVVKRLKERNPSKD-GLVCTARKPWIAVGMRNVDYKRARHFEVDLS---AFRNILDIDKDRMIA 127 (567)
Q Consensus 55 ~~pa---~~~~~~~V~~i~~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~~~~givIdls---~l~~il~id~~~~~v 127 (567)
.+|. .|.+.++|.++++.|...+. .. +..+|+||+.. |... +..+|++|.|+ .|+++-.+..+...|
T Consensus 62 ~~P~aVL~P~S~edVs~ilk~~~~~~s-~~pVaarG~GhSl~--Gqa~---a~~~GvvV~m~~~~~~~~~~~~~~~~~yv 135 (505)
T KOG1231|consen 62 LPPLAVLFPSSVEDVSKILKHCNDYGS-NFPVAARGGGHSLE--GQAL---ATRGGVVVCMDSSLLMKDVPVLVVDDLYV 135 (505)
T ss_pred CCCeeEEcCCCHHHHHHHHHHHhccCC-cceeeccCCccccc--Cccc---cCCCCeEEEEehhhccCCCceeecccceE
Confidence 3455 45666666666666666531 22 23345555432 2111 12588776654 356654566667899
Q ss_pred EEcCCCcHHHHHHHHccCCc--eeeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCCh
Q 008384 128 KVEPLVNMGQISRATCPMNL--SLAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYK 205 (567)
Q Consensus 128 ~VeaGv~~~~L~~~l~~~Gl--~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~ 205 (567)
.|+||..|-+|++++.++|| +.+.++.. .||||.++++|+|+..++||...+||.+++||+++|++++|++. .|+
T Consensus 136 dV~~g~~Widll~~t~e~GL~p~swtDyl~--ltVGGtlsnagiggqafRyGpqi~NV~~LdVVtgkGeiv~cs~r-~n~ 212 (505)
T KOG1231|consen 136 DVSAGTLWIDLLDYTLEYGLSPFSWTDYLP--LTVGGTLSNAGIGGQAFRYGPQISNVIELDVVTGKGEIVTCSKR-ANS 212 (505)
T ss_pred EeeCChhHHHHHHHHHHcCCCccCcCCccc--eeecceeccCccccceeeccchhhceEEEEEEcCCCcEEecccc-cCc
Confidence 99999999999999999999 55555543 89999999999999999999999999999999999999999997 999
Q ss_pred hhhhhccccCCCceEEEEEEEEEEeccc
Q 008384 206 DLFYAIPWSQGTLGLLVSAEIKLIPIKE 233 (567)
Q Consensus 206 dLf~a~~gs~G~lGiIt~~tl~l~p~~~ 233 (567)
+||+++.||+|+|||||+++++|+|+|.
T Consensus 213 ~lf~~vlGglGqfGIITrArI~le~aP~ 240 (505)
T KOG1231|consen 213 NLFFLVLGGLGQFGIITRARIKLEPAPK 240 (505)
T ss_pred eeeeeeeccCcceeeEEEEEEEeccCCc
Confidence 9999999999999999999999999994
No 15
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.83 E-value=2.5e-20 Score=170.65 Aligned_cols=133 Identities=32% Similarity=0.427 Sum_probs=115.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
.|.+.++|+++++++++.+. ...+++++|++. |.+. ..++++|||++||+|+++|+++++++|+||+++.+|
T Consensus 6 ~P~s~~ev~~~v~~a~~~~~--~v~~~g~G~~~~--~~~~----~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l 77 (139)
T PF01565_consen 6 RPKSVEEVQAIVKFANENGV--PVRVRGGGHSWT--GQSS----DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDL 77 (139)
T ss_dssp EESSHHHHHHHHHHHHHTTS--EEEEESSSTTSS--STTS----STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHH
T ss_pred EeCCHHHHHHHHHHHHHcCC--cEEEEcCCCCcc--cccc----cCCcEEEeeccccccccccccceeEEEeccccchhc
Confidence 48899999999999999875 455667777654 2221 368999999999998899999999999999999999
Q ss_pred HHHHccCCceeeecC-CCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEc
Q 008384 139 SRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRAT 199 (567)
Q Consensus 139 ~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s 199 (567)
.++|.++|+.++..+ .+..+|+||++++++.+..++.||.++|+|+++++|++||+++++|
T Consensus 78 ~~~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 78 YEALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999998655 5678899999988888888999999999999999999999999985
No 16
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=99.81 E-value=1.5e-19 Score=194.43 Aligned_cols=191 Identities=10% Similarity=0.045 Sum_probs=151.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCcc--ccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDY--KRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMG 136 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~--~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~ 136 (567)
.|.+.++|++|+++|.+++. .++++|++.+.. |++.... -..++|+|||++||+|++|| ++.+++|+|||++.
T Consensus 44 ~P~SteEVa~IVklC~e~~v--PVIPRGgGTGLt--GGAvP~~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~ 118 (564)
T PRK11183 44 FPGTLLELWRVLQACVAADK--IIIMQAANTGLT--GGSTPNGNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLY 118 (564)
T ss_pred ecCCHHHHHHHHHHHHHcCC--eEEEeCCCcccc--cCcccCCCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHH
Confidence 79999999999999999885 455667766543 2222110 01248999999999999999 55789999999999
Q ss_pred HHHHHHccCCceeeecC-C-CCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeE-------EEEcCC------
Q 008384 137 QISRATCPMNLSLAVVA-E-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQV-------VRATKD------ 201 (567)
Q Consensus 137 ~L~~~l~~~Gl~~~~~p-~-~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~v-------v~~s~~------ 201 (567)
+|.++|.++|+.++..+ + +-.+||||.|+.++.|....+||.+.+.++. ++|+++|++ +....+
T Consensus 119 ~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRgga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~ 197 (564)
T PRK11183 119 QLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRGPAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILT 197 (564)
T ss_pred HHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEcchhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHH
Confidence 99999999999988755 3 3467999999777777778999999999999 999999999 432221
Q ss_pred ---CC----------------------------------Chhhhhhc--cccCCCceEEEEEEEEEEeccceeEEEEecC
Q 008384 202 ---NE----------------------------------YKDLFYAI--PWSQGTLGLLVSAEIKLIPIKEYMKLTYKPV 242 (567)
Q Consensus 202 ---~~----------------------------------~~dLf~a~--~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~ 242 (567)
+. |.|+...+ .||.|+|||+ +++|++.|.|+-..+.|. .
T Consensus 198 ~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaDl~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~i-g 275 (564)
T PRK11183 198 RLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNADPRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYI-G 275 (564)
T ss_pred hhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCCHHHHhhccCCCceEEEE-EEEeccccCCCcceEEEE-e
Confidence 11 23888888 9999999999 999999999986665665 4
Q ss_pred CCCHHHHHHHHHHHh
Q 008384 243 ASNLREIAQAYADSF 257 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~ 257 (567)
+.+.+++.+....++
T Consensus 276 ~n~~~~~~~~rr~il 290 (564)
T PRK11183 276 TNDPAVLTEIRRHIL 290 (564)
T ss_pred CCCHHHHHHHHHHHH
Confidence 678888888777765
No 17
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=99.78 E-value=3.7e-19 Score=179.78 Aligned_cols=190 Identities=18% Similarity=0.241 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQI 138 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L 138 (567)
.|.+.++|.+|++.|.+.+. .++.-||..... |++- +..+-|||+|..||+|+++|+-.+++.+++||.+.++
T Consensus 95 ~Pkst~eVS~ILkYCn~~kL--AVVPQGGNTgLV--GgSV---PvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~ 167 (511)
T KOG1232|consen 95 KPKSTEEVSAILKYCNDRKL--AVVPQGGNTGLV--GGSV---PVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENA 167 (511)
T ss_pred cCCCHHHHHHHHHhhccccE--EEecCCCCcccc--cCcc---cchHHHhhhhhhhccccccccccceEEeccceEehhh
Confidence 78999999999999988664 233344444332 2211 2347899999999999999999999999999999999
Q ss_pred HHHHccCCceeee-cCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEE----cCCCCChhhhhhccc
Q 008384 139 SRATCPMNLSLAV-VAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRA----TKDNEYKDLFYAIPW 213 (567)
Q Consensus 139 ~~~l~~~Gl~~~~-~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~----s~~~~~~dLf~a~~g 213 (567)
..+|.++|+++|- .|.-.+|-|||.++.++.|-.-.+||...-+|+++|+|+|+|+|+.. .+++.+.|+-+.+.|
T Consensus 168 d~~l~e~g~m~PlDLgAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIG 247 (511)
T KOG1232|consen 168 DNFLAEKGYMFPLDLGAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIG 247 (511)
T ss_pred HHHHHhcCceeeecCCCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheec
Confidence 9999999999986 44678999999996555555578999999999999999999999873 456788999999999
Q ss_pred cCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHH
Q 008384 214 SQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADS 256 (567)
Q Consensus 214 s~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (567)
|+|++||||.+++-+.|.|+.+...|+. ..+++++++.+.+.
T Consensus 248 SEGtlGVvT~vSil~~~kpksvn~af~g-i~sf~~v~k~fv~A 289 (511)
T KOG1232|consen 248 SEGTLGVVTKVSILAPPKPKSVNVAFIG-IESFDDVQKVFVEA 289 (511)
T ss_pred CCceeeEEeeEEEeecCCCcceeEEEEc-cccHHHHHHHHHHH
Confidence 9999999999999999999988777764 34566666555443
No 18
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.77 E-value=1.9e-18 Score=178.18 Aligned_cols=150 Identities=22% Similarity=0.275 Sum_probs=119.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCCc
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLVN 134 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~-l~~il~id~~~~~v~VeaGv~ 134 (567)
.|.++++|+++++++++.+. |+..+|.|+|....+ +|++||+++ |+.| ++ ++.+++|+||++
T Consensus 36 ~P~s~edv~~~v~~a~~~~~-----------p~~v~GgGsnll~~d~g~~gvvI~l~~~l~~i-~~--~~~~v~v~aG~~ 101 (298)
T PRK13905 36 EPADIEDLQEFLKLLKENNI-----------PVTVLGNGSNLLVRDGGIRGVVIRLGKGLNEI-EV--EGNRITAGAGAP 101 (298)
T ss_pred eCCCHHHHHHHHHHHHHcCC-----------CEEEEeCCceEEecCCCcceEEEEecCCcceE-Ee--cCCEEEEECCCc
Confidence 68999999999999998775 666677776655443 489999998 9887 55 457899999999
Q ss_pred HHHHHHHHccCCce-eeecCCCCccchhhhhcccCCCCCCccc-CcccceEEEEEEEEecCeEEEEcCCCCChhhhhhcc
Q 008384 135 MGQISRATCPMNLS-LAVVAELDDLTVGGLINGYGIEGSSHIY-GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIP 212 (567)
Q Consensus 135 ~~~L~~~l~~~Gl~-~~~~p~~~~~tvGG~i~~gg~g~~s~~~-G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~ 212 (567)
+.+|.++|.++|+. +...++++. ||||++..++ +.| |.++|+|+++++|++||++++++++ |++|++|
T Consensus 102 ~~~L~~~l~~~Gl~gle~~~gipG-TVGGai~~Na-----G~~G~~~~d~v~~v~vv~~~G~~~~~~~~----e~~~~yR 171 (298)
T PRK13905 102 LIKLARFAAEAGLSGLEFAAGIPG-TVGGAVFMNA-----GAYGGETADVLESVEVLDRDGEIKTLSNE----ELGFGYR 171 (298)
T ss_pred HHHHHHHHHHcCCCcchhccCCCc-chhHHHHHcC-----CcCceEhheeEEEEEEEeCCCCEEEEEHH----HcCCcCc
Confidence 99999999999983 111222332 8999985322 124 4899999999999999999998764 9999999
Q ss_pred ccCCC--ceEEEEEEEEEEecc
Q 008384 213 WSQGT--LGLLVSAEIKLIPIK 232 (567)
Q Consensus 213 gs~G~--lGiIt~~tl~l~p~~ 232 (567)
+|.+. +||||+++|++.|..
T Consensus 172 ~s~~~~~~gII~~~~l~l~~~~ 193 (298)
T PRK13905 172 HSALQEEGLIVLSATFQLEPGD 193 (298)
T ss_pred cccCCCCCEEEEEEEEEEcCCC
Confidence 98654 899999999999974
No 19
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=99.70 E-value=6.5e-17 Score=163.79 Aligned_cols=205 Identities=18% Similarity=0.197 Sum_probs=161.1
Q ss_pred cccccccccccccC---CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCcccc----CC-eEEEEcCCCCC
Q 008384 45 LGDVKSDMKSYKKR---QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKR----AR-HFEVDLSAFRN 116 (567)
Q Consensus 45 ~~n~~~~~~~~~pa---~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~----~~-givIdls~l~~ 116 (567)
+.|+|.....-.|. .|...++|-.|++.+..++- ..+..|||.+.. +.+-+ .+ -+-+|++.||+
T Consensus 149 i~~Lregkf~RiPDiVvWP~chdevVkiv~lA~khN~--~iiPiGGGTSVs------~al~cP~~E~R~iislDtsqmnr 220 (613)
T KOG1233|consen 149 IINLREGKFPRIPDIVVWPKCHDEVVKIVELAMKHNC--AIIPIGGGTSVS------NALDCPETEKRAIISLDTSQMNR 220 (613)
T ss_pred HHHHhcCccCCCCceEecccchHHHHHHHHHHhhcCe--EEEEeCCccccc------ccccCCcccceeEEEecHHhhhh
Confidence 34455444333444 78888999999999988874 233334443321 11111 12 24588999999
Q ss_pred ceEEeCCCcEEEEcCCCcHHHHHHHHccCCceeeecC-CCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeE
Q 008384 117 ILDIDKDRMIAKVEPLVNMGQISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQV 195 (567)
Q Consensus 117 il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~v 195 (567)
||-+|.++-++++|+|++-.+|.+.|.+.|+....-| ++...|+||.++..+.|+.-..||++-|-|+.+.+|+|.|.+
T Consensus 221 iLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPDS~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Gii 300 (613)
T KOG1233|consen 221 ILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPDSIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGII 300 (613)
T ss_pred eeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCCceeeecccceeeeccccccccccCChhHheEEEEeecCcchh
Confidence 9999999999999999999999999999999987777 577889999999889999999999999999999999999987
Q ss_pred EE-Ec--CCCCChhhhhhccccCCCceEEEEEEEEEEeccceeEEEEecCCCCHHHHHHHHHHHhC
Q 008384 196 VR-AT--KDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIKEYMKLTYKPVASNLREIAQAYADSFA 258 (567)
Q Consensus 196 v~-~s--~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (567)
-. |+ +-+.+||+.+-+.||+|+|||||++++|+.|.|++.+.-.. .|.++++-+..+.+...
T Consensus 301 ek~Cq~PRmS~GPDihh~IlGSEGTLGVitEvtiKirPiPe~~ryGS~-aFPNFEqGV~f~REvA~ 365 (613)
T KOG1233|consen 301 EKQCQVPRMSSGPDIHHIILGSEGTLGVITEVTIKIRPIPEVKRYGSF-AFPNFEQGVNFFREVAI 365 (613)
T ss_pred hhhhcCCcccCCCCcceEEeccCcceeEEEEEEEEEeechhhhhcCcc-ccCcHHHHHHHHHHHHH
Confidence 65 22 12368999999999999999999999999999997654433 47889988888877653
No 20
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=3.4e-16 Score=161.49 Aligned_cols=146 Identities=16% Similarity=0.172 Sum_probs=121.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.+.++|+++++++++.+. |+..+|.|+|....++ |++|++++|++| +++ +.+++|+||+.+
T Consensus 42 ~p~~~edv~~~l~~a~~~~i-----------p~~v~GgGSNll~~d~g~~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~ 107 (305)
T PRK12436 42 APTNYDEIQEVIKYANKYNI-----------PVTFLGNGSNVIIKDGGIRGITVSLIHITGV-TVT--GTTIVAQCGAAI 107 (305)
T ss_pred ecCCHHHHHHHHHHHHHcCC-----------CEEEEcCCeEEEEeCCCeeEEEEEeCCcCcE-EEe--CCEEEEEeCCcH
Confidence 78999999999999998876 7778888888776554 899999889987 776 368999999999
Q ss_pred HHHHHHHccCCce----eeecCCCCccchhhhhcccCCCCCCcccC-cccceEEEEEEEEecCeEEEEcCCCCChhhhhh
Q 008384 136 GQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYG-LFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (567)
Q Consensus 136 ~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~s~~~G-~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a 210 (567)
.+|.+++.++|+. +...|+ ||||++.+++. .|| .++|.+.+++++++||++++++++ |+.|+
T Consensus 108 ~~L~~~~~~~gl~Gle~~~giPG----tVGGav~~NAG-----ayG~~~~dvl~~v~vv~~~G~v~~~~~~----e~~f~ 174 (305)
T PRK12436 108 IDVSRIALDHNLTGLEFACGIPG----SVGGALYMNAG-----AYGGEISFVLTEAVVMTGDGELRTLTKE----AFEFG 174 (305)
T ss_pred HHHHHHHHHcCCccchhhcCCcc----chhHHHHhcCc-----cchhehheeeeEEEEEeCCCCEEEEEHH----HhcCc
Confidence 9999999999985 223444 89999843221 144 788999999999999999999886 99999
Q ss_pred ccccC--CCceEEEEEEEEEEec
Q 008384 211 IPWSQ--GTLGLLVSAEIKLIPI 231 (567)
Q Consensus 211 ~~gs~--G~lGiIt~~tl~l~p~ 231 (567)
||.|. ....||++++|++.+.
T Consensus 175 YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 175 YRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred CCCCcCCCCCEEEEEEEEEEcCC
Confidence 99983 3457999999999875
No 21
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.67 E-value=6.2e-16 Score=159.28 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=119.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCC---eEEEEcCC-CCCceEEeCCCcEEEEcCCCc
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSA-FRNILDIDKDRMIAKVEPLVN 134 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~-l~~il~id~~~~~v~VeaGv~ 134 (567)
.|.+.++|+++++++++++. |+..+|.|+|....++ |++|++++ ++.+ .+ ++.+++|+||+.
T Consensus 41 ~p~~~edl~~~v~~a~~~~i-----------p~~vlGgGSNllv~d~g~~gvVI~l~~~~~~i-~~--~~~~v~v~AG~~ 106 (302)
T PRK14652 41 RPADPDALSALLRAVRELGV-----------PLSILGGGANTLVADAGVRGVVLRLPQDFPGE-ST--DGGRLVLGAGAP 106 (302)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------cEEEEcCCcceeecCCCEeeEEEEecCCcceE-Ee--cCCEEEEECCCc
Confidence 68999999999999998876 8888888888776654 79999977 4444 43 346999999999
Q ss_pred HHHHHHHHccCCce----eeecCCCCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhh
Q 008384 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (567)
Q Consensus 135 ~~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a 210 (567)
+.+|.+++.++||. +...|+ ||||++..++ +..+|.++|+|.++++|+++| +.+.+++ |+.|+
T Consensus 107 ~~~L~~~~~~~GL~GlE~l~gIPG----TvGGav~mNa----Ga~ggei~d~v~~v~vv~~~G-~~~~~~~----e~~f~ 173 (302)
T PRK14652 107 ISRLPARAHAHGLVGMEFLAGIPG----TLGGAVAMNA----GTKLGEMKDVVTAVELATADG-AGFVPAA----ALGYA 173 (302)
T ss_pred HHHHHHHHHHcCCcccccccCCCc----chhHHHHHcC----CCCceEhhheEEEEEEECCCC-cEEeehh----hcCcc
Confidence 99999999999994 333444 9999995443 246799999999999999999 6566554 99999
Q ss_pred ccccC-CCceEEEEEEEEEEecc
Q 008384 211 IPWSQ-GTLGLLVSAEIKLIPIK 232 (567)
Q Consensus 211 ~~gs~-G~lGiIt~~tl~l~p~~ 232 (567)
||+|. +.-||||+++|++.|..
T Consensus 174 YR~s~~~~~~II~~a~~~L~~~~ 196 (302)
T PRK14652 174 YRTCRLPPGAVITRVEVRLRPGD 196 (302)
T ss_pred cceeccCCCeEEEEEEEEEecCC
Confidence 99984 43489999999999854
No 22
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.66 E-value=6.2e-16 Score=159.65 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=120.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.++++|+++++++++.+. |+..+|.|+|....++ |++|++++|++| +++. .+++|+||+.+
T Consensus 42 ~p~~~edv~~~v~~a~~~~i-----------p~~vlGgGSNll~~d~g~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~ 107 (307)
T PRK13906 42 TPTKNEEVQAVVKYAYQNEI-----------PVTYLGNGSNIIIREGGIRGIVISLLSLDHI-EVSD--DAIIAGSGAAI 107 (307)
T ss_pred EcCCHHHHHHHHHHHHHcCC-----------CEEEEcCceeEeecCCCcceEEEEecCccce-EEeC--CEEEEECCCcH
Confidence 68999999999999999876 7888888888776554 899999899998 7764 58999999999
Q ss_pred HHHHHHHccCCceeeecC-CCCccchhhhhcccCCCCCCccc-CcccceEEEEEEEEecCeEEEEcCCCCChhhhhhccc
Q 008384 136 GQISRATCPMNLSLAVVA-ELDDLTVGGLINGYGIEGSSHIY-GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPW 213 (567)
Q Consensus 136 ~~L~~~l~~~Gl~~~~~p-~~~~~tvGG~i~~gg~g~~s~~~-G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~g 213 (567)
.+|.+++.++||.-.-.+ +++. ||||++..++. .| |.++|+|+++++|+++|++++++++ |+.|+||.
T Consensus 108 ~~l~~~~~~~Gl~GlE~~~gIPG-tVGGav~mNaG-----ayGg~i~D~l~~v~vv~~~G~~~~~~~~----e~~f~YR~ 177 (307)
T PRK13906 108 IDVSRVARDYALTGLEFACGIPG-SIGGAVYMNAG-----AYGGEVKDCIDYALCVNEQGSLIKLTTK----ELELDYRN 177 (307)
T ss_pred HHHHHHHHHcCCccchhhcCCCc-cHhHHHHhhCC-----cchhhhhhheeEEEEEeCCCCEEEEEHH----HccCcCCc
Confidence 999999999999421111 2332 89999843221 13 6999999999999999999999876 99999999
Q ss_pred cC--CCceEEEEEEEEEEec
Q 008384 214 SQ--GTLGLLVSAEIKLIPI 231 (567)
Q Consensus 214 s~--G~lGiIt~~tl~l~p~ 231 (567)
|. ..--||++++|++.|.
T Consensus 178 S~~~~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 178 SIIQKEHLVVLEAAFTLAPG 197 (307)
T ss_pred ccCCCCCEEEEEEEEEECCC
Confidence 84 2235999999999863
No 23
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.65 E-value=1.1e-15 Score=160.32 Aligned_cols=147 Identities=17% Similarity=0.166 Sum_probs=123.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCC---eEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR---HFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.+++++.+++++++..+. |+..+|.|+|.+..++ |++|+++ ++.+ +++.++.+++|+||+.|
T Consensus 38 ~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNlLv~D~g~~GvVI~l~-~~~i-~i~~~~~~v~vgAG~~~ 104 (363)
T PRK13903 38 TCTSTEELVAAVRELDAAGE-----------PLLVLGGGSNLVIADDGFDGTVVRVA-TRGV-TVDCGGGLVRAEAGAVW 104 (363)
T ss_pred EeCCHHHHHHHHHHHHHCCC-----------CEEEEeCCeeEeECCCCccEEEEEeC-CCcE-EEeCCCCEEEEEcCCCH
Confidence 68899999999999998876 8888899998887664 7999997 5887 78766679999999999
Q ss_pred HHHHHHHccCCce----eeecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEEEec-CeEEEEcCCCCChhhh
Q 008384 136 GQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKDLF 208 (567)
Q Consensus 136 ~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV~ad-G~vv~~s~~~~~~dLf 208 (567)
.+|.+++.++|+. +...|+ ||||++ |+|++| +.++|.|.++++++.+ |++++.+++ |++
T Consensus 105 ~~l~~~a~~~GL~GlE~laGIPG----TVGGAv~mNaGayG------~ei~D~l~sV~vvd~~~G~~~~~~~~----el~ 170 (363)
T PRK13903 105 DDVVARTVEAGLGGLECLSGIPG----SAGATPVQNVGAYG------QEVSDTITRVRLLDRRTGEVRWVPAA----DLG 170 (363)
T ss_pred HHHHHHHHHcCCccccccCCCCc----chhhHhhcCCChhH------HHHhhhEeEEEEEECCCCEEEEEEHH----Hcc
Confidence 9999999999985 334566 899988 444444 4789999999999965 999998764 999
Q ss_pred hhccccC---CCceEEEEEEEEEEecc
Q 008384 209 YAIPWSQ---GTLGLLVSAEIKLIPIK 232 (567)
Q Consensus 209 ~a~~gs~---G~lGiIt~~tl~l~p~~ 232 (567)
|+||+|. +..+|||+++|++.|..
T Consensus 171 f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 171 FGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred eeccccccCCCCCEEEEEEEEEEEcCC
Confidence 9999983 34789999999999874
No 24
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.64 E-value=1.8e-15 Score=154.87 Aligned_cols=147 Identities=24% Similarity=0.235 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCcccc---CCeEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKR---ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~---~~givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.+.++|+++++++++.+. |+..+|.|+|.+.. .+|++|++++|+.+ .+|+ +.+++|+||+.+
T Consensus 18 ~p~s~edl~~~l~~a~~~~~-----------p~~vlGgGSNll~~d~~~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~~~ 84 (284)
T TIGR00179 18 CPESIEQLVNVLDNAKEEDQ-----------PLLILGEGSNLLILDDGRGGVIINLGKGIDI-EDDE-GEYVHVGGGENW 84 (284)
T ss_pred EeCCHHHHHHHHHHHHHcCC-----------CEEEEecceEEEEccCCcCeEEEECCCCceE-EEec-CCEEEEEcCCcH
Confidence 68999999999999999886 77777888777654 37899999999887 5666 579999999999
Q ss_pred HHHHHHHccCCc----eeeecCCCCccchhhhhcccCCCCCCcccCc-ccceEEEEEEEEecCeEEEEcCCCCChhhhhh
Q 008384 136 GQISRATCPMNL----SLAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (567)
Q Consensus 136 ~~L~~~l~~~Gl----~~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~-~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a 210 (567)
.+|.+++.++|| .++..|+ ||||++..++ +.||. +.|.|+++++|++||++++.+++ |+.|+
T Consensus 85 ~~l~~~~~~~Gl~GlE~l~giPG----tvGGai~mNA-----GayG~~i~d~l~~v~vv~~~G~~~~~~~~----~~~f~ 151 (284)
T TIGR00179 85 HKLVKYALKNGLSGLEFLAGIPG----TVGGAVIMNA-----GAYGVEISEVLVYATILLATGKTEWLTNE----QLGFG 151 (284)
T ss_pred HHHHHHHHHCCCcccccCCCCCc----hHHHHHHHhc-----ccchhehhheEEEEEEEeCCCCEEEEEHH----Hcccc
Confidence 999999999999 6666776 8999984322 12444 55688999999999999999876 99999
Q ss_pred ccccC--CCc-eEEEEEEEEEEec
Q 008384 211 IPWSQ--GTL-GLLVSAEIKLIPI 231 (567)
Q Consensus 211 ~~gs~--G~l-GiIt~~tl~l~p~ 231 (567)
||.|. ... .||+++++++.+.
T Consensus 152 YR~S~f~~~~~~iil~a~~~l~~~ 175 (284)
T TIGR00179 152 YRTSIFQHKYVGLVLKAEFQLTLG 175 (284)
T ss_pred CCccccCCCCcEEEEEEEEEeccc
Confidence 99984 332 6999999998554
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.57 E-value=2e-14 Score=147.76 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=122.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC---CeEEEEcCCCC-CceEEeCCCcEEEEcCCCc
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFR-NILDIDKDRMIAKVEPLVN 134 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~-~il~id~~~~~v~VeaGv~ 134 (567)
.|.+++++.++++++++.+. |+..+|.|+|.+..+ +|++|+++.++ ++ ..+.++.+++|+||+.
T Consensus 26 ~p~~~~dl~~~l~~~~~~~i-----------p~~vlG~GSNlL~~d~g~~GvVI~l~~~~~~i-~~~~~~~~v~v~AG~~ 93 (295)
T PRK14649 26 EPTTPDEAIAAAAWAEQRQL-----------PLFWLGGGSNLLVRDEGFDGLVARYRGQRWEL-HEHGDTAEVWVEAGAP 93 (295)
T ss_pred EcCCHHHHHHHHHHHHHCCC-----------CEEEEecceeEEEeCCCcCeEEEEecCCCcEE-EEeCCcEEEEEEcCCc
Confidence 58999999999999998876 888889999887754 68999998754 55 5565555899999999
Q ss_pred HHHHHHHHccCCcee-eecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhc
Q 008384 135 MGQISRATCPMNLSL-AVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAI 211 (567)
Q Consensus 135 ~~~L~~~l~~~Gl~~-~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~ 211 (567)
|.+|.+++.++||.- -...++|. ||||++ |+|+++ +.++|.|.++++++.+|++++.+++ |++|+|
T Consensus 94 ~~~l~~~~~~~GL~GlE~l~GIPG-TvGGa~~mNaGayg------~ei~d~l~~V~~~~~~g~~~~~~~~----el~f~Y 162 (295)
T PRK14649 94 MAGTARRLAAQGWAGLEWAEGLPG-TIGGAIYGNAGCYG------GDTATVLIRAWLLLNGSECVEWSVH----DFAYGY 162 (295)
T ss_pred HHHHHHHHHHcCCccccccCCCCc-chhHHHHhhccccc------eEhheeEEEEEEEeCCCCEEEEeHH----HcCccc
Confidence 999999999999963 22334455 999977 444444 7999999999999999999999775 999999
Q ss_pred cccC--CC--------ceEEEEEEEEEEecc
Q 008384 212 PWSQ--GT--------LGLLVSAEIKLIPIK 232 (567)
Q Consensus 212 ~gs~--G~--------lGiIt~~tl~l~p~~ 232 (567)
|.|. .. --||++++|++.|..
T Consensus 163 R~S~~~~~~~~~~~~~~~ii~~~~~~l~~~~ 193 (295)
T PRK14649 163 RTSVLKQLRADGITWRPPLVLAARFRLHRDD 193 (295)
T ss_pred ceeecccccccccccCCeEEEEEEEEECCCC
Confidence 9983 22 239999999998753
No 26
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.54 E-value=6.2e-14 Score=143.76 Aligned_cols=145 Identities=14% Similarity=0.133 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC---CeEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.+.+++.++++++++ +. |+..+|.|+|.+..+ +|++|.+++|+.| +++. ..++|+||+.+
T Consensus 39 ~p~s~eel~~~~~~~~~-~~-----------p~~vlG~GSNlLv~d~g~~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l 103 (297)
T PRK14653 39 IPNSTNGFIETINLLKE-GI-----------EVKILGNGTNVLPKDEPMDFVVVSTERLDDI-FVDN--DKIICESGLSL 103 (297)
T ss_pred ecCCHHHHHHHHHHHhc-CC-----------CEEEEcCCeeEEEecCCccEEEEEeCCcCce-EEeC--CEEEEeCCCcH
Confidence 58899999999999988 75 888899999988765 5899999789998 8873 58999999999
Q ss_pred HHHHHHHccCCce----eeecCCCCccchhhhhcccCCCCCCcccCc-ccceEEEEEEEEecCeEEEEcCCCCChhhhhh
Q 008384 136 GQISRATCPMNLS----LAVVAELDDLTVGGLINGYGIEGSSHIYGL-FSDTVVAYEIVLADGQVVRATKDNEYKDLFYA 210 (567)
Q Consensus 136 ~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i~~gg~g~~s~~~G~-~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a 210 (567)
.+|..++.++||. +...|+ ||||++.+++.. ||. ++|.|.++++++ +|++++.+++ |+-|+
T Consensus 104 ~~L~~~~~~~GL~GlE~l~gIPG----TVGGAv~mNAGa-----yG~ei~d~l~~V~~~d-~g~v~~~~~~----e~~f~ 169 (297)
T PRK14653 104 KKLCLVAAKNGLSGFENAYGIPG----SVGGAVYMNAGA-----YGWETAENIVEVVAYD-GKKIIRLGKN----EIKFS 169 (297)
T ss_pred HHHHHHHHHCCCcchhhhcCCch----hHHHHHHHhCcc-----CchhhheeEEEEEEEC-CCEEEEEchh----hcccc
Confidence 9999999999992 333576 899999432211 455 999999999999 7899988775 99999
Q ss_pred ccccC-CC--ceEEEEEEEEEEecc
Q 008384 211 IPWSQ-GT--LGLLVSAEIKLIPIK 232 (567)
Q Consensus 211 ~~gs~-G~--lGiIt~~tl~l~p~~ 232 (567)
||.|. +. --|||+++|++.|..
T Consensus 170 YR~S~~~~~~~~iI~~a~f~L~~~~ 194 (297)
T PRK14653 170 YRNSIFKEEKDLIILRVTFKLKKGN 194 (297)
T ss_pred CccccCCCCCcEEEEEEEEEEecCC
Confidence 99884 32 239999999998853
No 27
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1.1.3.37 from EC, which is involved in the final step of the D-erythroascorbic acid biosynthesis pathway [].; GO: 0003885 D-arabinono-1,4-lactone oxidase activity, 0055114 oxidation-reduction process, 0016020 membrane; PDB: 2VFU_A 2VFV_A 2VFT_A 2VFS_A 2VFR_A.
Probab=99.51 E-value=4.1e-14 Score=143.32 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=91.3
Q ss_pred ceEEEEEeeccccHHHHHHHHHHHhhcCC--ceeeeeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCC
Q 008384 391 NHVIQDMLVPLYKVGDALEWQHREVEVYP--LWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGP 468 (567)
Q Consensus 391 ~~viqDv~VP~~~l~e~l~~l~~~~~~~P--~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~ 468 (567)
++..++++||+++++++|+.+.+++++++ ..+.|+.+|.++ ++..+ ||+..+ .+.|+|++-.|. |..
T Consensus 124 ~~~~~E~~iP~~~~~~~l~~l~~~~~~~~~~~~~~pie~R~~~------~d~~~-Ls~~~~---~~~~~i~~~~~~-~~~ 192 (259)
T PF04030_consen 124 RFWEMEYAIPIENAPEALRELRALIDKEGGFPVHFPIEVRFVK------ADDAW-LSPAYG---RDTCYIEIHMYR-PMG 192 (259)
T ss_dssp ---EEEEEEEGGGHHHHHHHHHHTHHHHG--GGEEEEEEEEE--------B-ST-T-TTBT---S-EEEEEEEE-S--HH
T ss_pred cceeEEEeeCHHHHHHHHHHHHHHHHHcccCceeEEEEEEEEC------CChhh-cCCCCC---CCEEEEEEEEeC-Ccc
Confidence 46778999999999999999999998877 667799999874 33333 355333 358999999997 332
Q ss_pred CCCCCccchhHHHHHHHHHHHHcCCcccccccccCCHHHHHhhCCh-hHHHHHHHhCCCCCCCccchhh
Q 008384 469 ILRGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYK 536 (567)
Q Consensus 469 ~~~~~~~~~~~~~r~lE~~v~~~gG~k~Lya~~y~t~~ef~~~y~~-~~y~~lr~kydp~~~f~~~y~k 536 (567)
.. .....+.+.+|+++.++||++++-+...++.+++.++||+ +.|.++|++|||+|.|.|-|-+
T Consensus 193 ~~----~~~~~~~~~~e~~~~~~ggRpHWgK~~~~~~~~l~~~Yp~~~~F~~~r~~~DP~g~F~n~~~~ 257 (259)
T PF04030_consen 193 DP----VPYEEFFRAFEQILRKYGGRPHWGKNHTLTAEQLRKLYPRLDDFLAVRKKLDPQGVFLNDYLR 257 (259)
T ss_dssp -------HHHHHHHHHHHHHGGGT-EE-TTS-----HHHHHHT-TTHHHHHHHHHHH-TT-TT--HHHH
T ss_pred cc----ccHHHHHHHHHHHHHHcCCEECcCcCCCCCHHHHHHHCcCHHHHHHHHHHhCCCCCCCCHhhh
Confidence 11 1247899999999999999999999999999999999987 8999999999999999998754
No 28
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.48 E-value=3.4e-13 Score=138.05 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=123.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCC----eEEEEcCCCCCceEEeCCCcEEEEcCCCc
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRAR----HFEVDLSAFRNILDIDKDRMIAKVEPLVN 134 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----givIdls~l~~il~id~~~~~v~VeaGv~ 134 (567)
.|.+.++++++++++++.+. |+..+|.|||.+..|+ |++|.+.+|+.+ +++. ..++|+||+.
T Consensus 38 ~p~~~~eL~~~l~~~~~~~~-----------p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~i-~~~~--~~v~a~AG~~ 103 (302)
T PRK14650 38 TPKTIKDAEHIFKAAIEEKI-----------KIFILGGGSNILINDEEEIDFPIIYTGHLNKI-EIHD--NQIVAECGTN 103 (302)
T ss_pred ecCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEECCCccceEEEEECCcCcE-EEeC--CEEEEEeCCc
Confidence 58899999999988888765 8999999999988765 478888679887 7764 4799999999
Q ss_pred HHHHHHHHccCCce----eeecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhh
Q 008384 135 MGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLF 208 (567)
Q Consensus 135 ~~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf 208 (567)
|.+|.+++.++||. +...|+ ||||++ |+|++| +.++|.|.++++++.+|++++.+++ |+.
T Consensus 104 ~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNAGayG------~ei~d~l~sV~~~d~~g~~~~~~~~----e~~ 169 (302)
T PRK14650 104 FEDLCKFALQNELSGLEFIYGLPG----TLGGAIWMNARCFG------NEISEILDKITFIDEKGKTICKKFK----KEE 169 (302)
T ss_pred HHHHHHHHHHcCCchhhhhcCCCc----chhHHHHhhCCccc------cchheeEEEEEEEECCCCEEEEEHH----HcC
Confidence 99999999999984 445666 999998 555555 7899999999999999999988776 999
Q ss_pred hhccccC--CCceEEEEEEEEEEecc
Q 008384 209 YAIPWSQ--GTLGLLVSAEIKLIPIK 232 (567)
Q Consensus 209 ~a~~gs~--G~lGiIt~~tl~l~p~~ 232 (567)
|+||.|. ..-.||++++|++.|..
T Consensus 170 f~YR~S~f~~~~~iIl~a~f~L~~~~ 195 (302)
T PRK14650 170 FKYKISPFQNKNTFILKATLNLKKGN 195 (302)
T ss_pred cccccccCCCCCEEEEEEEEEEcCCC
Confidence 9999984 22359999999998754
No 29
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.47 E-value=4.1e-13 Score=135.49 Aligned_cols=147 Identities=22% Similarity=0.237 Sum_probs=126.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC---CeEEEEcCCCCCceEEeCCCcEEEEcCCCcH
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDIDKDRMIAKVEPLVNM 135 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~id~~~~~v~VeaGv~~ 135 (567)
.|.+.+++.++++.+++.+. |+..+|.|||.+..+ ++++|.+.+++.+ +++.+...++|++|+.|
T Consensus 26 ~~~~~e~l~~~~~~~~~~~~-----------p~~ilG~GSNlLv~d~g~~gvvi~~~~~~~~-~~~~~~~~i~a~aG~~~ 93 (291)
T COG0812 26 EPRDIEELKAALKYAKAEDL-----------PVLILGGGSNLLVRDGGIGGVVIKLGKLNFI-EIEGDDGLIEAGAGAPW 93 (291)
T ss_pred ecCCHHHHHHHHHhhhhcCC-----------CEEEEecCceEEEecCCCceEEEEcccccce-eeeccCCeEEEccCCcH
Confidence 68888888888888887665 899999999988766 5899999988887 78877779999999999
Q ss_pred HHHHHHHccCCce----eeecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhh
Q 008384 136 GQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFY 209 (567)
Q Consensus 136 ~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~ 209 (567)
.+|.+++..+|+. +...|+ ||||++ |+|++| +.++|.|.++++++.+|++.+.+++ |+-|
T Consensus 94 ~~l~~~~~~~gl~GlE~l~gIPG----svGgav~mNaGAyG------~Ei~d~~~~v~~ld~~G~~~~l~~~----el~f 159 (291)
T COG0812 94 HDLVRFALENGLSGLEFLAGIPG----SVGGAVIMNAGAYG------VEISDVLVSVEVLDRDGEVRWLSAE----ELGF 159 (291)
T ss_pred HHHHHHHHHcCCcchhhhcCCCc----ccchhhhccCcccc------cchheeEEEEEEEcCCCCEEEEEHH----HhCc
Confidence 9999999999983 444666 899998 566666 7899999999999999999999876 9999
Q ss_pred hccccC--CCceEEEEEEEEEEec
Q 008384 210 AIPWSQ--GTLGLLVSAEIKLIPI 231 (567)
Q Consensus 210 a~~gs~--G~lGiIt~~tl~l~p~ 231 (567)
+||.|. -.-.||++++|++.|-
T Consensus 160 ~YR~S~f~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 160 GYRTSPFKKEYLVVLSVEFKLTKG 183 (291)
T ss_pred ccccCcCCCCCEEEEEEEEEeCCC
Confidence 999994 2338999999999885
No 30
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.46 E-value=4.6e-13 Score=138.99 Aligned_cols=146 Identities=15% Similarity=0.080 Sum_probs=121.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC--CeEEEEcCCCCCceEEe--CCC-cEEEEcCCC
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA--RHFEVDLSAFRNILDID--KDR-MIAKVEPLV 133 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~--~givIdls~l~~il~id--~~~-~~v~VeaGv 133 (567)
.|.+.++++++++++++.+. |+..+|.|||.+.++ +|++|.+ +|+++ +++ .++ .+++|+||+
T Consensus 26 ~p~~~~el~~~~~~~~~~~~-----------p~~vlG~GSNlLv~D~~~g~vI~~-~~~~~-~~~~~~~~~~~v~a~AG~ 92 (334)
T PRK00046 26 EAESEEQLLEALADARAAGL-----------PVLVLGGGSNVLFTEDFDGTVLLN-RIKGI-EVLSEDDDAWYLHVGAGE 92 (334)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceEEEEECCCCCEEEEEe-cCCce-EEEecCCCeEEEEEEcCC
Confidence 58899999999999988775 888899999988765 6888987 48887 773 222 389999999
Q ss_pred cHHHHHHHHccCCce----eeecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEEEec-CeEEEEcCCCCChh
Q 008384 134 NMGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIVLAD-GQVVRATKDNEYKD 206 (567)
Q Consensus 134 ~~~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV~ad-G~vv~~s~~~~~~d 206 (567)
.|.+|.+++.++||. +..+|+ ||||++ |+|++| +.++|.|.++++++.+ |++++.+++ |
T Consensus 93 ~~~~l~~~~~~~gl~GlE~l~gIPG----TVGGAv~mNaGayG------~ei~d~l~~V~v~d~~~g~~~~~~~~----e 158 (334)
T PRK00046 93 NWHDLVLWTLQQGMPGLENLALIPG----TVGAAPIQNIGAYG------VELKDVCDYVEALDLATGEFVRLSAA----E 158 (334)
T ss_pred cHHHHHHHHHHcCchhhHHhcCCCc----chhHHHHhcCCcCc------ccHheeEEEEEEEECCCCcEEEEEHH----H
Confidence 999999999999983 455666 999998 555555 7899999999999987 999999876 9
Q ss_pred hhhhccccC--CC---ceEEEEEEEEEEec
Q 008384 207 LFYAIPWSQ--GT---LGLLVSAEIKLIPI 231 (567)
Q Consensus 207 Lf~a~~gs~--G~---lGiIt~~tl~l~p~ 231 (567)
+.|+||.|. .. --||++++|++.|.
T Consensus 159 ~~f~YR~S~f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 159 CRFGYRDSIFKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred cCcccccccCCCCCcCCEEEEEEEEEecCC
Confidence 999999994 22 24999999999985
No 31
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.38 E-value=3.2e-12 Score=132.73 Aligned_cols=148 Identities=12% Similarity=0.147 Sum_probs=119.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccC---CeEEEEcCCCCCceEEe---CCCcEEEEcCC
Q 008384 59 QKEHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRA---RHFEVDLSAFRNILDID---KDRMIAKVEPL 132 (567)
Q Consensus 59 ~~~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~givIdls~l~~il~id---~~~~~v~VeaG 132 (567)
.|.+.+++.+++++++..+. |+..+|.|||.+..| +|++|.+.+|+.+ ++. .+...++|++|
T Consensus 35 ~p~s~~el~~~l~~~~~~~~-----------p~~iLG~GSNlL~~D~g~~G~VI~l~~~~~i-~i~~~~~~~~~v~agAG 102 (354)
T PRK14648 35 EPRSCTQLRALIEEAQRARI-----------PLSLIGGGSNVLIADEGVPGLMLSLRRFRSL-HTQTQRDGSVLVHAGAG 102 (354)
T ss_pred eeCCHHHHHHHHHHHHHcCC-----------CEEEEeceeEEEEeCCCccEEEEEeCCcCce-EEeeccCCcEEEEEEeC
Confidence 58899999999999998775 888999999998876 5899998778887 652 22247999999
Q ss_pred CcHHHHHHHHccCCce----eeecCCCCccchhhhh--cccCCCCCCcccCcccceEEEEEEE-----------------
Q 008384 133 VNMGQISRATCPMNLS----LAVVAELDDLTVGGLI--NGYGIEGSSHIYGLFSDTVVAYEIV----------------- 189 (567)
Q Consensus 133 v~~~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~i--~~gg~g~~s~~~G~~~d~V~~~evV----------------- 189 (567)
+.|.+|.+++.++||. +...|+ ||||++ |+|++| +.++|.|.+++++
T Consensus 103 ~~~~~Lv~~~~~~gl~GlE~laGIPG----TVGGAv~mNAGAyG------~ei~d~l~~V~v~d~~~~~~~~~~~~~~~~ 172 (354)
T PRK14648 103 LPVAALLAFCAHHALRGLETFAGLPG----SVGGAAYMNARCYG------RAIADCFHSARTLVLHPVRSRAKELPEVRK 172 (354)
T ss_pred CcHHHHHHHHHHcCCcchhhhcCCCc----chhhHhhhcCCccc------eEhhheEEEEEEEeccCccccccccccccc
Confidence 9999999999999984 445666 999998 555655 6899999999999
Q ss_pred ---EecCeE-------------EEEcCCCCChhhhhhccccC--CC--------ceEEEEEEEEEEecc
Q 008384 190 ---LADGQV-------------VRATKDNEYKDLFYAIPWSQ--GT--------LGLLVSAEIKLIPIK 232 (567)
Q Consensus 190 ---~adG~v-------------v~~s~~~~~~dLf~a~~gs~--G~--------lGiIt~~tl~l~p~~ 232 (567)
+.+|++ .+.++ .|+.|+||.|. .. --||++++|++.|..
T Consensus 173 ~~~~~~g~~~~~~~~~~~~~~~~~~~~----~e~~f~YR~S~f~~~~~~~~~~~~~iIl~v~f~L~~~~ 237 (354)
T PRK14648 173 NAQDKRGECLGLDGGPFTCSSFQTVFA----RAGDWGYKRSPFQSPHGVELHAGRRLILSLCVRLTPGN 237 (354)
T ss_pred ccccCCCceecccccccccccceEecH----HHcCccCCcccCCCCccccccCCCEEEEEEEEEEcCCC
Confidence 456776 44444 49999999984 21 239999999998753
No 32
>PLN00107 FAD-dependent oxidoreductase; Provisional
Probab=99.29 E-value=1.9e-11 Score=120.54 Aligned_cols=133 Identities=14% Similarity=0.135 Sum_probs=106.3
Q ss_pred EEEeeccccHHHHHHHHHHHhhcCCceee------eeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCC
Q 008384 395 QDMLVPLYKVGDALEWQHREVEVYPLWLC------PHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGP 468 (567)
Q Consensus 395 qDv~VP~~~l~e~l~~l~~~~~~~P~wlc------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~ 468 (567)
.+++||+++++++|++++++++..|--|| ||.+|.+. .|..|. |+. .+.++|+|-.|.....
T Consensus 65 ~EyaVP~e~~~~aL~elr~l~~~~~~~l~~~ev~fPIevR~va------ADdawL-Sp~-----rDSv~I~~~~yr~~~~ 132 (257)
T PLN00107 65 SAISVPLSGAAAFINDIKALRDIEPDALCGLELNYGVLLRYVR------ASPAHL-GKE-----EDALDFDLTYYRSKDD 132 (257)
T ss_pred EEEEecHHHHHHHHHHHHHHHHhCcccccccccccCeEEEEec------Ccchhh-CCC-----CCeEEEEEEEecccCC
Confidence 39999999999999999999998876666 56688873 455553 542 3588999998872201
Q ss_pred CCCCCccchhHHHHHHHHH-HHHcCCcccccccccCCHHHHHhhCCh-hHHHHHHHhCCCCCCCccchhhhccCc
Q 008384 469 ILRGEVFDGAEAVRKMEQW-LIENGGFQPQYAVSELSEKNFWRMFDA-DLYEKCRKKYKAVGTFMSVYYKSKKGR 541 (567)
Q Consensus 469 ~~~~~~~~~~~~~r~lE~~-v~~~gG~k~Lya~~y~t~~ef~~~y~~-~~y~~lr~kydp~~~f~~~y~k~~~~~ 541 (567)
.. ..-+...+++++|++ +.++||++++-+.+.++.+++.++|++ +.|.+||++|||+|.|.|-|-+-....
T Consensus 133 ~~--~pr~~~~~f~eiEqial~kygGRPHWGK~h~l~~~~l~~lYPr~~dFlavR~~lDP~G~F~N~yl~rllg~ 205 (257)
T PLN00107 133 PA--APRLHEDAMEEIEQMAILKYGALPHWGKNRNAAFDGAIAKYKKAGEFLKVKERLDPEGLFSSEWSDKILGL 205 (257)
T ss_pred cc--ccccHHHHHHHHHHHHHHhcCCcCCchhccCCCHHHHHHHCcCHHHHHHHHHHhCCCCccCCHHHHHHhCc
Confidence 00 011236799999998 999999999999999999999999998 799999999999999999987744444
No 33
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.21 E-value=7.9e-11 Score=119.04 Aligned_cols=121 Identities=24% Similarity=0.273 Sum_probs=99.3
Q ss_pred CceeeccccCccccC---CeEEEEcCC-CCCceEEeCCCcEEEEcCCCcHHHHHHHHccCCce----eeecCCCCccchh
Q 008384 90 PWIAVGMRNVDYKRA---RHFEVDLSA-FRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS----LAVVAELDDLTVG 161 (567)
Q Consensus 90 ~~~~~G~~~~~~~~~---~givIdls~-l~~il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~----~~~~p~~~~~tvG 161 (567)
|+..+|.|||.+.+| +|++|.+.+ ++.+ +++ + +|++|+.|.+|.+++.++||. +...|+ |||
T Consensus 39 p~~vlG~GSNlL~~D~g~~g~vI~l~~~~~~~-~~~---~--~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPG----TVG 108 (273)
T PRK14651 39 PYRVLGGGSNLLVSDAGVPERVIRLGGEFAEW-DLD---G--WVGGGVPLPGLVRRAARLGLSGLEGLVGIPA----QVG 108 (273)
T ss_pred CeEEEeceeEEEEcCCCcceEEEEECCcceeE-eEC---C--EEECCCcHHHHHHHHHHCCCcchhhhcCCCc----chh
Confidence 888999999998876 588998865 5554 443 2 699999999999999999983 445666 999
Q ss_pred hhh--cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhccccC-CCceEEEEEEEEEEec
Q 008384 162 GLI--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQ-GTLGLLVSAEIKLIPI 231 (567)
Q Consensus 162 G~i--~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs~-G~lGiIt~~tl~l~p~ 231 (567)
|++ |+|++| +.++|.|.++++++ +|++++.+++ |+.|+||.|. -.--||++++|++.|.
T Consensus 109 GAv~mNaGayG------~ei~d~l~~V~~~~-~g~~~~~~~~----e~~f~YR~S~~~~~~iIl~a~f~l~~~ 170 (273)
T PRK14651 109 GAVKMNAGTRF------GEMADALHTVEIVH-DGGFHQYSPD----ELGFGYRHSGLPPGHVVTRVRLKLRPS 170 (273)
T ss_pred hHHHhhCCccc------cChheeEEEEEEEE-CCCEEEEEHH----HccccccccCCCCCEEEEEEEEEECCC
Confidence 998 555555 68999999999997 8999998876 9999999984 2224999999999875
No 34
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=98.93 E-value=3.9e-09 Score=105.81 Aligned_cols=120 Identities=21% Similarity=0.136 Sum_probs=94.3
Q ss_pred CceeeccccCccccCC--eEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHHHccCCce----eeecCCCCccchhhh
Q 008384 90 PWIAVGMRNVDYKRAR--HFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS----LAVVAELDDLTVGGL 163 (567)
Q Consensus 90 ~~~~~G~~~~~~~~~~--givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~----~~~~p~~~~~tvGG~ 163 (567)
|+..+|.|||.+..|+ +.+|-+++++.+ +++. .+++|+||+.|.+|.+++.++||. +...|+ ||||+
T Consensus 33 p~~vlG~GSNlLv~D~g~~~vv~~~~~~~~-~~~~--~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPG----tVGGA 105 (257)
T PRK13904 33 DGQIIGGANNLLISPNPKNLAILGKNFDYI-KIDG--ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPG----TLGGL 105 (257)
T ss_pred CeEEEeceeEEEEecCCccEEEEccCcCeE-EEeC--CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCc----cHHHH
Confidence 8889999999888652 334434568877 7754 479999999999999999999984 445666 99999
Q ss_pred h--cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhccccCCCceEEEEEEEEEEecc
Q 008384 164 I--NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWSQGTLGLLVSAEIKLIPIK 232 (567)
Q Consensus 164 i--~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs~G~lGiIt~~tl~l~p~~ 232 (567)
+ |+|++| +.++|.|.++++++ | +.++ .|+.|+||.|.=. .||++++|++.|..
T Consensus 106 v~mNaGa~g------~ei~d~l~~V~~~~--~---~~~~----~e~~f~YR~S~~~-~iIl~a~f~l~~~~ 160 (257)
T PRK13904 106 VKMNAGLKE------YEISNNLESICTNG--G---WIEK----EDIGFGYRSSGIN-GVILEARFKKTHGF 160 (257)
T ss_pred HHhcCCcCc------cchheeEEEEEEEe--e---EEeH----HHCcccccCcCCC-cEEEEEEEEECCCC
Confidence 8 455554 68999999999998 4 3444 4999999998422 49999999998854
No 35
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold. It is predominantly found in plant cytokinin dehydrogenase 1, where it is capable of binding both FAD and cytokinin substrates. The substrate displays a 'plug-into-socket' binding mode that seals the catalytic site and precisely positions the carbon atom undergoing oxidation in close contact with the reactive locus of the flavin []. ; GO: 0019139 cytokinin dehydrogenase activity, 0050660 flavin adenine dinucleotide binding, 0009690 cytokinin metabolic process, 0055114 oxidation-reduction process; PDB: 2EXR_A 2Q4W_A 3S1E_A 1W1Q_A 2QPM_A 3C0P_A 3BW7_A 3S1C_A 1W1S_A 2QKN_A ....
Probab=96.59 E-value=0.0045 Score=63.07 Aligned_cols=123 Identities=13% Similarity=0.173 Sum_probs=74.8
Q ss_pred EEEEEeeccccHHHHHHHHHHHh-----hcCCceeeeeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCC
Q 008384 393 VIQDMLVPLYKVGDALEWQHREV-----EVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPG 467 (567)
Q Consensus 393 viqDv~VP~~~l~e~l~~l~~~~-----~~~P~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~ 467 (567)
-=-+++||-+++.+|.+.+-+.+ ..-|+-++|+....-. ++....- |. ++.+.=|++.....
T Consensus 142 PWlnlfvP~s~i~dF~~~V~~~il~~~~~~GpiLvYP~~~~kwd-------~~~s~v~--Pd----e~vfylv~lLrsa~ 208 (281)
T PF09265_consen 142 PWLNLFVPKSRIEDFDRGVFKGILKDDGNSGPILVYPLNRSKWD-------TRMSAVI--PD----EDVFYLVALLRSAD 208 (281)
T ss_dssp --EEEEEEHHHHHHHHHHCCCCCTTTS-S-SEEEEEEEEGGGS--------TTSS------S----SSEEEEEEEEE---
T ss_pred cceeeecchHHHHHHHHHHHHHhhccCCCCceEEEEEecccccC-------CCCcccC--CC----CCeEEEEEEeCCCC
Confidence 33599999999999998876643 1258999999864320 1211111 21 25555566665421
Q ss_pred CC-CCCCccchhHHHHHHHHHHHHcC--CcccccccccCCHHHHHhhCCh--hHHHHHHHhCCCCCCC
Q 008384 468 PI-LRGEVFDGAEAVRKMEQWLIENG--GFQPQYAVSELSEKNFWRMFDA--DLYEKCRKKYKAVGTF 530 (567)
Q Consensus 468 ~~-~~~~~~~~~~~~r~lE~~v~~~g--G~k~Lya~~y~t~~ef~~~y~~--~~y~~lr~kydp~~~f 530 (567)
|. .......-.+.||+|=+...+.| |++||.. |.|.+++.+.|+. +.|.+.|++|||.+.|
T Consensus 209 P~~~~~~l~~l~~qN~~il~~c~~agi~~k~Yl~~--~~t~~dW~~HFG~~W~~f~~~K~~yDP~~IL 274 (281)
T PF09265_consen 209 PSDGPDDLERLLEQNRRILEFCRKAGIGGKQYLPH--YTTQEDWRRHFGPKWERFVERKRRYDPKAIL 274 (281)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHHTT--EEESS-----SSHHHHHHHHGHHHHHHHHHHHHH-TT--B
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHcCCceEECCCC--CCCHHHHHHHhchHHHHHHHHHHhCCchhhc
Confidence 21 11111122788999999995544 6667664 4999999999975 6999999999999766
No 36
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=94.52 E-value=0.2 Score=49.41 Aligned_cols=113 Identities=14% Similarity=0.134 Sum_probs=67.3
Q ss_pred ceEEEEEeeccccHHHHHHHHHHHhhcCCceeeeeEEecCCCCccCCCCCCCCCCcCCCCCCCCceeEEEEeecCCCCCC
Q 008384 391 NHVIQDMLVPLYKVGDALEWQHREVEVYPLWLCPHRLYKLPYKTMVYPEPGFEHHRRQGDTSYAQMYTDVGVYYAPGPIL 470 (567)
Q Consensus 391 ~~viqDv~VP~~~l~e~l~~l~~~~~~~P~wlcp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~~~~~~~ 470 (567)
..+..|++||.++++++++.++++++.+.+-.|-+- +. ..| .+.+++-+-. ..+
T Consensus 127 ~~~~~dv~vp~~~l~~~~~~~~~~~~~~~~~~~~~g--H~----------------~~g-----~~h~~~~~~~-~~~-- 180 (248)
T PF02913_consen 127 VWDTEDVAVPPSRLPEFLREIRALLREYGLEVCHFG--HA----------------GDG-----NLHLYILFDP-RDP-- 180 (248)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHCTEEEEEEE--EE----------------EEC-----EEEEEEEEET-TSH--
T ss_pred ceeeeeecccchhhhhHHHhhhhhhhhccccccceE--Ec----------------cCC-----eEEEEeeccc-chH--
Confidence 357899999999999999999999999982222221 10 012 3344444332 111
Q ss_pred CCCccchhHHHHHHHHHHHHcCCcccccccccCCHHH-HHhhCCh---hHHHHHHHhCCCCCCC
Q 008384 471 RGEVFDGAEAVRKMEQWLIENGGFQPQYAVSELSEKN-FWRMFDA---DLYEKCRKKYKAVGTF 530 (567)
Q Consensus 471 ~~~~~~~~~~~r~lE~~v~~~gG~k~Lya~~y~t~~e-f~~~y~~---~~y~~lr~kydp~~~f 530 (567)
.+.....+..+++-+.+.++||.-+-=--.-..+.. +.+.++. ..+.++|+.+||++.|
T Consensus 181 -~~~~~~~~~~~~~~~~~~~~gG~is~eHG~G~~k~~~~~~~~~~~~~~~~~~iK~~~DP~~il 243 (248)
T PF02913_consen 181 -EEPERAEALWDELYELVLELGGSISAEHGIGKLKKPYLEEEYGPAALRLMRAIKQAFDPNGIL 243 (248)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-BBSSSSGGGHHHHHHHCHHCHHHHHHHHHHHHHHH-TTS-B
T ss_pred -HHHHHHHHHHHHHHHHHHhcccccccccchhhhhHHHHHHhcchHHHHHHHHhhhccCCccCC
Confidence 011122567788888899999974432112222222 3345544 5889999999999755
No 37
>PRK09799 putative oxidoreductase; Provisional
Probab=93.66 E-value=0.085 Score=53.56 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~ 141 (567)
.|.+++++.+++++.+. .....+|+....... ......++||++++ .+-.|..+++.+++++++++.++.+.
T Consensus 7 ~P~sl~Ea~~ll~~~~~--~a~ilAGGT~L~~~~-----~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~ 78 (258)
T PRK09799 7 RPDSVEQALELKRRYQD--EAVWFAGGSKLNATP-----TRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDA 78 (258)
T ss_pred CCCCHHHHHHHHHhCCC--CCEEEecCCChHhhh-----CCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhC
Confidence 34566677777776532 234444544442111 11235789999975 44445556678999999999999875
Q ss_pred HccC-Cc-----eeeecCC-CCccchhhhhcccCCCCCCcccCcccceEEEEEEEEecCeEEEEcCCCCChhhhhhcccc
Q 008384 142 TCPM-NL-----SLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (567)
Q Consensus 142 l~~~-Gl-----~~~~~p~-~~~~tvGG~i~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs 214 (567)
..-. .| .+. .|. -+..|+||.++...-. | --...=..+..+|+..+|+.+.. .|+|-+ .
T Consensus 79 ~~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p~--s--D~~p~LlAldA~v~l~~~r~vpl------~~f~~g---~ 144 (258)
T PRK09799 79 RFIPAALREALGFVY-SRHLRNQSTIGGEIAARQEE--S--VLLPVLLALDAELVFGNGETLSI------EDYLAC---P 144 (258)
T ss_pred cccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCcc--H--HHHHHHHHcCCEEEEecCcEEeH------HHhcCC---C
Confidence 4221 11 111 233 3667999999542211 0 00111123455666666643322 254433 2
Q ss_pred CCCceEEEEEEEE
Q 008384 215 QGTLGLLVSAEIK 227 (567)
Q Consensus 215 ~G~lGiIt~~tl~ 227 (567)
.-.+||++.+-
T Consensus 145 --~~Eil~~I~iP 155 (258)
T PRK09799 145 --CDRLLTEIIIP 155 (258)
T ss_pred --CCcEEEEEEcC
Confidence 22589988764
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=92.47 E-value=0.24 Score=54.62 Aligned_cols=147 Identities=10% Similarity=0.060 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHH
Q 008384 61 EHDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISR 140 (567)
Q Consensus 61 ~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~ 140 (567)
..|.+++++.+++++.. ......|+..+. .. ..........+||++++..+-.|..+++.++++|++++.++.+
T Consensus 196 ~~P~sl~Ea~~ll~~~~---~a~lvAGGTdl~-~~--~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~el~~ 269 (467)
T TIGR02963 196 IAPTTLDDLAALKAAHP---DARIVAGSTDVG-LW--VTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTDAYA 269 (467)
T ss_pred ECCCCHHHHHHHHhhCC---CCEEEecCcchH-HH--HhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHHHHH
Confidence 45666777777777653 233334433321 01 0011123568999988654433444557899999999999987
Q ss_pred HHccC--Cc-----eeeecCC-CCccchhhhhcccCCCCCCcccCcccceE-----E--EEEEEEecCeEEEEcCCCCCh
Q 008384 141 ATCPM--NL-----SLAVVAE-LDDLTVGGLINGYGIEGSSHIYGLFSDTV-----V--AYEIVLADGQVVRATKDNEYK 205 (567)
Q Consensus 141 ~l~~~--Gl-----~~~~~p~-~~~~tvGG~i~~gg~g~~s~~~G~~~d~V-----~--~~evV~adG~vv~~s~~~~~~ 205 (567)
.+.++ .+ .+. .+. -+..||||.++...- .+|.. + .+++..++|+ .+..- .
T Consensus 270 ~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~asP---------~sD~~p~LlALdA~v~l~~~~G~-R~vpl----~ 334 (467)
T TIGR02963 270 ALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANGSP---------IGDSPPALIALGARLTLRKGEGR-RTLPL----E 334 (467)
T ss_pred HHHHHhHHHHHHHHHhC-CHHHcCceecccccccCCC---------chHHHHHHHHcCCEEEEEcCCCc-EEEeH----H
Confidence 65443 11 121 222 367799999954221 12321 2 2344445553 22222 2
Q ss_pred hhhhhcccc-CCCceEEEEEEEEE
Q 008384 206 DLFYAIPWS-QGTLGLLVSAEIKL 228 (567)
Q Consensus 206 dLf~a~~gs-~G~lGiIt~~tl~l 228 (567)
|+|-+++-. ...--||+++.+..
T Consensus 335 dF~~g~~kt~L~~~EiI~~I~iP~ 358 (467)
T TIGR02963 335 DFFIDYGKTDRQPGEFVEALHVPR 358 (467)
T ss_pred HhhcccccccCCCCceEEEEEecC
Confidence 655543322 23335999998763
No 39
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=92.06 E-value=0.054 Score=51.43 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=38.1
Q ss_pred CeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHHH---------ccCCceeeecCCCCccchhhhhcc
Q 008384 105 RHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRAT---------CPMNLSLAVVAELDDLTVGGLING 166 (567)
Q Consensus 105 ~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~l---------~~~Gl~~~~~p~~~~~tvGG~i~~ 166 (567)
...+||++++..+-.|..+++.+++|+++++.++.+.- .++--.+...+--+..|+||.+++
T Consensus 44 ~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~~~~~~~~~~p~L~~~~~~ias~~IRn~aTiGGNl~~ 114 (171)
T PF00941_consen 44 PDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELEESPLIQQYFPALAQAARRIASPQIRNRATIGGNLCN 114 (171)
T ss_dssp -SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHTT-BHHHHHHH
T ss_pred cceEEEeEEecccccEEEeccEEEECCCccHHHHhhcchhhhhHHHHHHHHHHhCCHhHeeeeeecccccc
Confidence 56899998864443344445789999999999998861 111111221112366799999954
No 40
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=90.65 E-value=0.35 Score=49.04 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~ 141 (567)
.|++++++.+++++... ......||+.+.. . .. .....++||++++ .+-.|..+++.+++++++++.++.+.
T Consensus 6 ~P~sl~Ea~~ll~~~~~--~a~~lAGGTdL~~-~--~~--~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~ 77 (257)
T TIGR03312 6 RPESTIQALELKKRHTG--VAVWFAGGSKLNA-T--PT--RTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDN 77 (257)
T ss_pred CCCCHHHHHHHHHhCCC--CCEEEecCcchhh-h--hc--ccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhC
Confidence 34556677777766532 2334445444421 1 11 1234688999875 44344555678999999999999764
Q ss_pred HccCC-c-----eeeecCC-CCccchhhhhcc
Q 008384 142 TCPMN-L-----SLAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 142 l~~~G-l-----~~~~~p~-~~~~tvGG~i~~ 166 (567)
..-.+ + .+ ..|. -+..|+||.+++
T Consensus 78 ~~~~~~L~~aa~~v-a~~qIRN~gTlGGNl~~ 108 (257)
T TIGR03312 78 ELTPAALKEALGFV-YSRHIRNQATIGGEIAA 108 (257)
T ss_pred cchHHHHHHHHHHh-CCHHHhccccHHHHhhc
Confidence 21111 1 11 1233 366799999964
No 41
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=87.70 E-value=0.41 Score=49.44 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEe-CCCcEEEEcCCCcHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDID-KDRMIAKVEPLVNMGQISR 140 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id-~~~~~v~VeaGv~~~~L~~ 140 (567)
.|++++++.+++++.. .....+|++.+.. . ..........+||++++..+-.|. .+++.+++++++++.++.+
T Consensus 9 ~P~sl~Ea~~ll~~~~---~a~ivaGGTdl~~-~--~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~~ 82 (291)
T PRK09971 9 EAATLEEAIELLADNP---QAKLIAGGTDVLI-Q--LHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQIIE 82 (291)
T ss_pred CCCCHHHHHHHHHhCC---CCEEEeccchHHH-H--HhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHhc
Confidence 4556677777776642 2333444443311 0 001112457889998855433334 2346799999999999986
Q ss_pred H--HccCC--c-----eeeecCC-CCccchhhhhcc
Q 008384 141 A--TCPMN--L-----SLAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 141 ~--l~~~G--l-----~~~~~p~-~~~~tvGG~i~~ 166 (567)
. +..+- | .+. .|. -+..|+||++++
T Consensus 83 ~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~ 117 (291)
T PRK09971 83 DPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICN 117 (291)
T ss_pred ChHHHHHhHHHHHHHHHhC-CHHHhcceeccccccc
Confidence 2 21111 0 111 233 467799999964
No 42
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=86.99 E-value=0.73 Score=48.25 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~ 141 (567)
.|.+++++++++++.. ...+.+|+..... .. .........+||+.++..+-.|..+.+.+++|++|++.++.+.
T Consensus 9 ~P~sl~eA~~ll~~~~---~a~ivaGGTdl~~-~~--~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~~ 82 (321)
T TIGR03195 9 RPASLADAVAALAAHP---AARPLAGGTDLLP-NL--RRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAED 82 (321)
T ss_pred CCCCHHHHHHHHhhCC---CCEEEEccchHHH-HH--hcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhhC
Confidence 3446677777776653 2333344443310 00 0011235788999875433233444567999999999999663
Q ss_pred --HccC-C-c-----eeeecCC-CCccchhhhhcc
Q 008384 142 --TCPM-N-L-----SLAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 142 --l~~~-G-l-----~~~~~p~-~~~~tvGG~i~~ 166 (567)
+..+ . | .+. .|. -+..||||.+++
T Consensus 83 ~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~ 116 (321)
T TIGR03195 83 ALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCL 116 (321)
T ss_pred hhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhc
Confidence 1111 0 1 111 233 366799999963
No 43
>PLN02906 xanthine dehydrogenase
Probab=86.96 E-value=1.2 Score=55.18 Aligned_cols=99 Identities=7% Similarity=0.010 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~ 141 (567)
.|.+++++.+++++.. ...+..|+..+. -...........+||++++..+-.|..+++.++++|++++.+|.+.
T Consensus 233 ~P~tl~ea~~ll~~~~---~a~ivAGGTdl~---~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el~~~ 306 (1319)
T PLN02906 233 RPTSLQHLLELKAEYP---DAKLVVGNTEVG---IEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSELQNL 306 (1319)
T ss_pred CcCCHHHHHHHHHhCC---CCEEEEcCchhH---HHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHHHHH
Confidence 4566777777776653 223333333321 0111112346789999986554444555578999999999999986
Q ss_pred HccCC-----c---eee---------ecCC-CCccchhhhhcc
Q 008384 142 TCPMN-----L---SLA---------VVAE-LDDLTVGGLING 166 (567)
Q Consensus 142 l~~~G-----l---~~~---------~~p~-~~~~tvGG~i~~ 166 (567)
|.+.= + .+| ..+. -+..||||.|++
T Consensus 307 l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~ 349 (1319)
T PLN02906 307 FRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICT 349 (1319)
T ss_pred HHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhcc
Confidence 54331 0 011 1233 367799999954
No 44
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=86.77 E-value=0.48 Score=48.19 Aligned_cols=97 Identities=10% Similarity=0.155 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH--
Q 008384 64 ENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA-- 141 (567)
Q Consensus 64 ~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~-- 141 (567)
.+++++.+.+++.. .....+|+..+. ..... ........+||++++..+-.|+.+++.+++++++++.++.+.
T Consensus 2 ~sl~ea~~ll~~~~---~a~ivaGgT~l~-~~~~~-~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 2 AALDEAWSLLEKAP---DSTFVSGSTLLQ-LQWEK-GTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCHHHHHHHHHhCC---CCEEEEccChHH-HHHhc-CcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 45677777777643 233334444331 11111 001225788999986655455556688999999999999752
Q ss_pred HccC--Cc-----eeeecCC-CCccchhhhhcc
Q 008384 142 TCPM--NL-----SLAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 142 l~~~--Gl-----~~~~~p~-~~~~tvGG~i~~ 166 (567)
+..+ .+ .+ ..|. -+..|+||.++.
T Consensus 77 i~~~~p~L~~a~~~i-a~~qIRN~aTlGGNl~~ 108 (264)
T TIGR03199 77 IKRALPCFVDAASAI-AAPGVRNRATIGGNIAS 108 (264)
T ss_pred hHhHhHHHHHHHHHh-cCHHHhcceecHHhccC
Confidence 1110 01 11 1233 367799999954
No 45
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
Probab=80.60 E-value=1 Score=33.22 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=15.3
Q ss_pred HHhhCCh--hHHHHHHHhCCCCCCCc
Q 008384 508 FWRMFDA--DLYEKCRKKYKAVGTFM 531 (567)
Q Consensus 508 f~~~y~~--~~y~~lr~kydp~~~f~ 531 (567)
.+..|+. ....++|++|||++.|.
T Consensus 16 ~~~yyg~n~~rL~~iK~~yDP~n~F~ 41 (47)
T PF08031_consen 16 QEAYYGENYDRLRAIKRKYDPDNVFR 41 (47)
T ss_dssp HHHHHGGGHHHHHHHHHHH-TT-TS-
T ss_pred HHHHhchhHHHHHHHHHHhCccceeC
Confidence 3444443 57788899999999885
No 46
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=77.75 E-value=2.7 Score=44.28 Aligned_cols=104 Identities=15% Similarity=0.041 Sum_probs=62.0
Q ss_pred CCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHHHccCCce-------eeecCCCCccchhhhhcccCCCCCCccc
Q 008384 104 ARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRATCPMNLS-------LAVVAELDDLTVGGLINGYGIEGSSHIY 176 (567)
Q Consensus 104 ~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-------~~~~p~~~~~tvGG~i~~gg~g~~s~~~ 176 (567)
+-+.+|-+.++..+-+|+...+.+++++|+++.+..+.|..+=-. +...+--+.-|+||.|++|.-=+-+
T Consensus 244 ~l~~vi~v~~l~eL~~i~~~~~~l~iGAgvt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangSPIGDt--- 320 (493)
T COG4630 244 DLNPVIFVGHLAELRRIEVSTGGLEIGAGVTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGSPIGDT--- 320 (493)
T ss_pred hcCCeEEecchhhhheeeecCCcEEEccCccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCCcCCCC---
Confidence 344566666666665667777899999999999999998765211 1111123456999999542211111
Q ss_pred CcccceEEEEEEEEecCeEEEEcCCCCChhhhhhcccc
Q 008384 177 GLFSDTVVAYEIVLADGQVVRATKDNEYKDLFYAIPWS 214 (567)
Q Consensus 177 G~~~d~V~~~evV~adG~vv~~s~~~~~~dLf~a~~gs 214 (567)
...=..++.++++-.|+-.+.- .-.|.|-+|.--
T Consensus 321 -PPaLIALgA~ltLr~g~~~Rtl---PLe~~Fi~Y~kq 354 (493)
T COG4630 321 -PPALIALGATLTLRSGDGRRTL---PLEDYFIAYGKQ 354 (493)
T ss_pred -CchhhhcCcEEEEEecCCcccc---cHHHHHHHhhhh
Confidence 1111346677777666543322 234778777654
No 47
>PLN00192 aldehyde oxidase
Probab=70.14 E-value=8.2 Score=48.27 Aligned_cols=101 Identities=11% Similarity=0.051 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhcC-CCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHH
Q 008384 61 EHDENVKKVVKRLKERN-PSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQIS 139 (567)
Q Consensus 61 ~~~~~V~~i~~~~~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~ 139 (567)
..|.+++++.++..+.. ......+..|+..+..+ . . ......+||++++..+-.|..+++.++++|++++.++.
T Consensus 237 ~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~--k--~-~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~ 311 (1344)
T PLN00192 237 YTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYY--K--D-EELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAI 311 (1344)
T ss_pred ECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceee--e--c-cCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHH
Confidence 34566777777777652 01123344444444221 1 1 22357899999855444445455789999999999998
Q ss_pred HHHccCCc---eee---------ecCC-CCccchhhhhcc
Q 008384 140 RATCPMNL---SLA---------VVAE-LDDLTVGGLING 166 (567)
Q Consensus 140 ~~l~~~Gl---~~~---------~~p~-~~~~tvGG~i~~ 166 (567)
+.+..+-. .+| ..+. -+..||||.++.
T Consensus 312 ~~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~ 351 (1344)
T PLN00192 312 EALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVM 351 (1344)
T ss_pred HHHHhhccccchHHHHHHHHHHhcChhhccceechhhhcc
Confidence 77655421 011 1222 356799999954
No 48
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=68.80 E-value=5.5 Score=49.66 Aligned_cols=98 Identities=9% Similarity=0.022 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceEEeCCCcEEEEcCCCcHHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILDIDKDRMIAKVEPLVNMGQISRA 141 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~id~~~~~v~VeaGv~~~~L~~~ 141 (567)
.|.+++++.++.+++. ...+..|+..+. -...........+||++++..+-.|..+++.+++++++++.++.+.
T Consensus 241 ~P~tl~ea~~ll~~~~---~a~lvAGGTdl~---~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~~~ 314 (1330)
T TIGR02969 241 SPVTLKELLEAKFKYP---QAPVVMGNTSVG---PEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVKDI 314 (1330)
T ss_pred CCCCHHHHHHHHHhCC---CCEEEecCcchH---HHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHHHH
Confidence 3456666666666643 233333433321 0111111234579999885555444555678999999999999986
Q ss_pred HccC---------C----c-----eeeecCC-CCccchhhhhcc
Q 008384 142 TCPM---------N----L-----SLAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 142 l~~~---------G----l-----~~~~~p~-~~~~tvGG~i~~ 166 (567)
|.+. . + .+. .+. -+..||||+++.
T Consensus 315 l~~~i~~~p~~~~~~~p~L~~a~~~ia-s~qIRN~gTlGGNi~~ 357 (1330)
T TIGR02969 315 LADVVQKLPEETTQTYRALLKHLGTLA-GSQIRNMASLGGHIIS 357 (1330)
T ss_pred HHHhhhcCchhhhHHHHHHHHHHHHhC-Chhhcccccchhhccc
Confidence 5432 1 1 111 222 366799999953
No 49
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.10 E-value=13 Score=40.60 Aligned_cols=49 Identities=16% Similarity=0.284 Sum_probs=33.5
Q ss_pred HccCCceeeecCCCCccchhhhh-cccCCCCCCcccCcccceEEEEEEEEecCeEEEEcC
Q 008384 142 TCPMNLSLAVVAELDDLTVGGLI-NGYGIEGSSHIYGLFSDTVVAYEIVLADGQVVRATK 200 (567)
Q Consensus 142 l~~~Gl~~~~~p~~~~~tvGG~i-~~gg~g~~s~~~G~~~d~V~~~evV~adG~vv~~s~ 200 (567)
|..+|+-+| -|-|++ +|++.| -..-.+.+-.|.|+.+|-.||+|+++.+
T Consensus 278 LtANGIeLP--------DV~GaivSGtAsG--DwTLSCVRGqV~SiTFVF~DGtirTvp~ 327 (472)
T TIGR03752 278 LTANGIELP--------DVAGAVVSGTASG--DWTLSCVRGQVRSLTFVFNDGTIRTVPR 327 (472)
T ss_pred ccccCccCC--------CccceEEeeeecc--ceEEEEEeeeEEEEEEEEeCCeEEEecC
Confidence 345566555 366666 444443 3334566789999999999999999864
No 50
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=53.28 E-value=12 Score=38.46 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCceeeccCCCceeeccccCccccCCeEEEEcCCCCCceE-EeCCCcEEEEcCCCcHHHHHH
Q 008384 62 HDENVKKVVKRLKERNPSKDGLVCTARKPWIAVGMRNVDYKRARHFEVDLSAFRNILD-IDKDRMIAKVEPLVNMGQISR 140 (567)
Q Consensus 62 ~~~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~givIdls~l~~il~-id~~~~~v~VeaGv~~~~L~~ 140 (567)
.+++|++...+++.... .....||+.+..+-... .....-+||++++...+. +..+++.+++||-+++.++.+
T Consensus 8 rp~Sv~eA~~ll~~~~~---a~~laGGt~L~~~~k~~---~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~ei~~ 81 (284)
T COG1319 8 RPASVEEALNLLARAPD---AKYLAGGTDLLPLMKLG---IERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTEIAR 81 (284)
T ss_pred CCCCHHHHHHHHHhCCC---cEEeeCcchHHHHhhcc---cCCcceEEEecCChhhhceEeecCCEEEEeecccHHHHHh
Confidence 34567777777776442 22233333332111111 124667889987642212 233566799999999999975
Q ss_pred HHccCCce--------eeecCC-CCccchhhhhcc
Q 008384 141 ATCPMNLS--------LAVVAE-LDDLTVGGLING 166 (567)
Q Consensus 141 ~l~~~Gl~--------~~~~p~-~~~~tvGG~i~~ 166 (567)
--.-+... .-..|. -+..||||.++.
T Consensus 82 ~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~ 116 (284)
T COG1319 82 HPAVRRIPPALSEAASAIASPQVRNRATIGGNLCN 116 (284)
T ss_pred ChhhhhhchHHHHHHHHhcChhhcceeeecchhcc
Confidence 33222221 112444 366799999854
No 51
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=45.06 E-value=12 Score=38.27 Aligned_cols=29 Identities=24% Similarity=0.408 Sum_probs=22.0
Q ss_pred HHHHHhCCCCCCCccchhhhccCccchHHHH
Q 008384 518 EKCRKKYKAVGTFMSVYYKSKKGRKTEKEVQ 548 (567)
Q Consensus 518 ~~lr~kydp~~~f~~~y~k~~~~~~~~~~~~ 548 (567)
..++..||| +|||-|.||+....++.+++
T Consensus 96 ~~v~~EYdP--m~PNdye~v~Kr~~~er~~~ 124 (378)
T KOG1996|consen 96 EHVKCEYDP--MFPNDYEKVVKRQRDERKQR 124 (378)
T ss_pred cchhhhcCC--CCcchHHHHHHHhhhHHHHH
Confidence 567888999 59999999877766644443
No 52
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=36.82 E-value=20 Score=24.96 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=14.3
Q ss_pred cCCHHHHHhhCC--hhHHHHH
Q 008384 502 ELSEKNFWRMFD--ADLYEKC 520 (567)
Q Consensus 502 y~t~~ef~~~y~--~~~y~~l 520 (567)
|++.+||.++|. ++.|.+|
T Consensus 1 YLsd~dF~~vFgm~~~eF~~l 21 (36)
T PF02209_consen 1 YLSDEDFEKVFGMSREEFYKL 21 (36)
T ss_dssp GS-HHHHHHHHSS-HHHHHHS
T ss_pred CcCHHHHHHHHCCCHHHHHHC
Confidence 788999999996 4677765
No 53
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=26.56 E-value=33 Score=25.48 Aligned_cols=12 Identities=42% Similarity=0.947 Sum_probs=10.8
Q ss_pred ccCCHHHHHhhC
Q 008384 501 SELSEKNFWRMF 512 (567)
Q Consensus 501 ~y~t~~ef~~~y 512 (567)
..+|+++||+.|
T Consensus 32 ~~~se~~FW~ry 43 (51)
T smart00751 32 KVLSEEEFWARY 43 (51)
T ss_pred CCCCHHHHHHHH
Confidence 679999999988
No 54
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=24.62 E-value=32 Score=28.11 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=10.5
Q ss_pred HHHHhhcCCceeeeeE
Q 008384 411 QHREVEVYPLWLCPHR 426 (567)
Q Consensus 411 l~~~~~~~P~wlcp~~ 426 (567)
+-+++-+-|+|||||.
T Consensus 49 flk~alkTpvwl~pi~ 64 (92)
T PF02228_consen 49 FLKLALKTPVWLNPIN 64 (92)
T ss_dssp HHHHHHT-TTSTTTT-
T ss_pred HHHHHHcCCeeecccc
Confidence 3345567899999996
No 55
>smart00153 VHP Villin headpiece domain.
Probab=23.23 E-value=55 Score=22.74 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=13.5
Q ss_pred cCCHHHHHhhCC--hhHHHHH
Q 008384 502 ELSEKNFWRMFD--ADLYEKC 520 (567)
Q Consensus 502 y~t~~ef~~~y~--~~~y~~l 520 (567)
|++.+||.++|+ ++.|.+|
T Consensus 1 yLsdeeF~~vfgmsr~eF~~L 21 (36)
T smart00153 1 YLSDEDFEEVFGMTREEFYKL 21 (36)
T ss_pred CCCHHHHHHHHCCCHHHHHhC
Confidence 678888888885 4566654
No 56
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=21.14 E-value=1.1e+02 Score=27.71 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCcccccccccCCHHHHHhhCCh--hHHHHHHHhCCCCCCCccc
Q 008384 482 RKMEQWLIENGGFQPQYAVSELSEKNFWRMFDA--DLYEKCRKKYKAVGTFMSV 533 (567)
Q Consensus 482 r~lE~~v~~~gG~k~Lya~~y~t~~ef~~~y~~--~~y~~lr~kydp~~~f~~~ 533 (567)
..||+++.+.--=..-.++.|+|.+||.++|.. +..++++.-+-..| |...
T Consensus 27 ~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~p~~~~v~~V~~wL~~~G-~~~~ 79 (143)
T PF09286_consen 27 DALEQYLAEVSDPGSPNYGKYLTPEEFAALFAPSPEDVAAVKSWLKSHG-LTVV 79 (143)
T ss_dssp HHHHHHHHHHHTTTSTTTT----HHHHHHHHS--HHHHHHHHHHHHHCT--EEE
T ss_pred HHHHHHHHhCcCCCCcccccCCCHHHHHHHHCCCHHHHHHHHHHHHHcC-Ccee
Confidence 568999988865556677899999999999954 57899888776665 5433
Done!