Your job contains 1 sequence.
>008385
MNEYTVRKVGRLQILHKRTTSTTPFLQQTMLATECSLALFKVICSAGDSCHACGAISIML
LMCGLPRYPAPYPSMVRPAFPPRPPGPVGVLPSVARPPVPGIPGVRPIMPPVVRPVPLPT
VTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA
EGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDES
VQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKT
NPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDR
PETSSPDRSRVHDRRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREY
ERCLKDWEYREREREKERQYEKEKEKERERKRKKEILYDEEEDEDDSRKRWRRSVLEEKR
RKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQQQRDALKLLSDNAVNGSLAEESAVE
SKGMDVEHDYHDDSIRENHMAGKPCHP
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 008385
(567 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2195568 - symbol:AT1G60200 species:3702 "Arabi... 493 7.7e-50 3
WB|WBGene00012245 - symbol:W04D2.6 species:6239 "Caenorha... 205 1.6e-13 1
UNIPROTKB|E2RQR0 - symbol:RBM25 "Uncharacterized protein"... 180 2.3e-13 1
UNIPROTKB|E9PQU5 - symbol:RBM25 "RNA-binding protein 25" ... 180 2.3e-13 1
DICTYBASE|DDB_G0269926 - symbol:DDB_G0269926 "splicing fa... 201 4.8e-13 1
RGD|1565486 - symbol:RGD1565486 "similar to RNA binding m... 180 1.8e-12 2
ZFIN|ZDB-GENE-030131-5547 - symbol:rbm25 "RNA binding mot... 192 1.1e-11 2
UNIPROTKB|I3LLA0 - symbol:RBM25 "Uncharacterized protein"... 180 1.1e-11 2
MGI|MGI:1914289 - symbol:Rbm25 "RNA binding motif protein... 180 2.0e-11 2
UNIPROTKB|E1BHM5 - symbol:RBM25 "Uncharacterized protein"... 180 5.2e-11 2
UNIPROTKB|P49756 - symbol:RBM25 "RNA-binding protein 25" ... 180 5.2e-11 2
UNIPROTKB|E1BSR5 - symbol:RBM25 "Uncharacterized protein"... 180 5.3e-11 2
FB|FBgn0028474 - symbol:CG4119 species:7227 "Drosophila m... 146 1.3e-07 2
GENEDB_PFALCIPARUM|PFF0505c - symbol:PFF0505c "hypothetic... 144 1.6e-06 1
UNIPROTKB|C6KSU9 - symbol:PFF0505c "Putative uncharacteri... 144 1.6e-06 1
POMBASE|SPAC644.16 - symbol:SPAC644.16 "RNA-binding prote... 135 4.8e-06 1
FB|FBgn0027841 - symbol:CstF-64 "Cleavage stimulation fac... 131 1.4e-05 1
ZFIN|ZDB-GENE-040625-116 - symbol:puf60b "poly-U binding ... 131 1.9e-05 1
UNIPROTKB|K7GQZ8 - symbol:LOC100515986 "Uncharacterized p... 106 2.9e-05 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 125 4.1e-05 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 125 9.2e-05 2
ASPGD|ASPL0000005213 - symbol:AN6074 species:162425 "Emer... 119 0.00015 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00030 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 119 0.00031 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00033 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 117 0.00038 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 119 0.00044 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 117 0.00046 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 119 0.00051 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 119 0.00051 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00052 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 119 0.00052 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 119 0.00053 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 119 0.00053 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 117 0.00058 1
MGI|MGI:1343054 - symbol:Cstf2 "cleavage stimulation fact... 118 0.00061 1
ZFIN|ZDB-GENE-031118-2 - symbol:cstf2 "cleavage stimulati... 117 0.00061 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 117 0.00065 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 117 0.00067 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00069 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00069 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 117 0.00071 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 117 0.00072 1
UNIPROTKB|K7GQE7 - symbol:LOC100515986 "Uncharacterized p... 117 0.00073 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 117 0.00074 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 117 0.00074 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 117 0.00075 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 117 0.00075 1
UNIPROTKB|Q8HXM1 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00076 1
UNIPROTKB|K7GS58 - symbol:LOC100515986 "Uncharacterized p... 117 0.00076 1
UNIPROTKB|E2RP40 - symbol:CSTF2 "Uncharacterized protein"... 117 0.00077 1
UNIPROTKB|P33240 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00077 1
UNIPROTKB|Q5RDA3 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00077 1
UNIPROTKB|E1BVJ6 - symbol:CSTF2 "Uncharacterized protein"... 117 0.00080 1
UNIPROTKB|F1MVI1 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00080 1
UNIPROTKB|I3LE23 - symbol:LOC100515986 "Uncharacterized p... 117 0.00080 1
UNIPROTKB|E7EWR4 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00081 1
UNIPROTKB|E1C8T0 - symbol:CSTF2 "Uncharacterized protein"... 117 0.00083 1
UNIPROTKB|G1K177 - symbol:CSTF2 "Cleavage stimulation fac... 117 0.00090 1
>TAIR|locus:2195568 [details] [associations]
symbol:AT1G60200 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
evidence=ISM] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102 PROSITE:PS51025
SMART:SM00311 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
KO:K12822 SUPFAM:SSF101233 OMA:VENDFMM EMBL:AY074284 EMBL:BT001972
IPI:IPI00528280 RefSeq:NP_176226.3 UniGene:At.25089
ProteinModelPortal:Q8VY15 SMR:Q8VY15 PRIDE:Q8VY15
EnsemblPlants:AT1G60200.1 GeneID:842315 KEGG:ath:AT1G60200
TAIR:At1g60200 HOGENOM:HOG000084588 InParanoid:Q8VY15
PhylomeDB:Q8VY15 ProtClustDB:CLSN2918507 ArrayExpress:Q8VY15
Genevestigator:Q8VY15 Uniprot:Q8VY15
Length = 899
Score = 493 (178.6 bits), Expect = 7.7e-50, Sum P(3) = 7.7e-50
Identities = 113/249 (45%), Positives = 162/249 (65%)
Query: 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 183
AEKPQT +Y+GKIA T ++DF++S+L+ CG VKS RA+ P+ PKGFGF EFESAEG+
Sbjct: 199 AEKPQTTIYIGKIA-TVENDFMMSILEFCGHVKSCLRAEDPTTKKPKGFGFYEFESAEGI 257
Query: 184 LRALRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQS 243
LRA+RLL + IDGQEL++ V+QAT+EYL +YV+ Q KE+++
Sbjct: 258 LRAIRLLTQRTIDGQELLVNVNQATKEYLLKYVEKKIETAKKAKESQGT---KENQAEGP 314
Query: 244 VEKNEPTKSPENL--KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTN 301
+ + +S +N KD E+ KE+ D N V+T+E+R+AD+EA+EK+ +EERLK+N
Sbjct: 315 ESEQDKLESADNETGKDGESKIKENIDIANSAVLTDEEREADREAMEKIETAIEERLKSN 374
Query: 302 XXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRP 361
ADGSG+ E K++DGDS+ D+ R+D A + D ET+ + H+RP
Sbjct: 375 PLPPPP-PPPADGSGM---EFAFKSKDGDSNTDVARSDAAAN--DVETSGE-----HNRP 423
Query: 362 ETSSPDRSR 370
+TSSPD S+
Sbjct: 424 DTSSPDWSK 432
Score = 41 (19.5 bits), Expect = 7.7e-50, Sum P(3) = 7.7e-50
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 64 GLPRYPAPY 72
GL RYP+PY
Sbjct: 139 GLLRYPSPY 147
Score = 37 (18.1 bits), Expect = 7.7e-50, Sum P(3) = 7.7e-50
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 467 SRKRWRRSVL 476
SR+RW R+ L
Sbjct: 526 SRRRWHRAAL 535
>WB|WBGene00012245 [details] [associations]
symbol:W04D2.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0009792 GO:GO:0002009 GO:GO:0040007 GO:GO:0018991
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477 GO:GO:0003676
Gene3D:1.20.1390.10 EMBL:Z75552 SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:Z75551 GeneID:259655
KEGG:cel:CELE_W04D2.6 CTD:259655 RefSeq:NP_001256427.1
ProteinModelPortal:H2L2D0 SMR:H2L2D0 EnsemblMetazoa:W04D2.6c.1
EnsemblMetazoa:W04D2.6c.2 WormBase:W04D2.6c OMA:VENDFMM
Uniprot:H2L2D0
Length = 707
Score = 205 (77.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 66/254 (25%), Positives = 114/254 (44%)
Query: 125 EKPQTK-VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGV 183
+KP + V+VG I+ +F+ +L CG V SWKR + SNG +GFGFC F EG
Sbjct: 42 QKPDSSPVFVGNISDKCSDEFIRKILNECGNVASWKRIK-GSNGKLQGFGFCHFTDLEGT 100
Query: 184 LRALRLLNKFNIDGQELMLKVDQATREYLERYV--DXXXXXXXXXXXXQDAGAGKEDESV 241
LRALR+L++F++ ++L +K D+ R+ L + + D ED+
Sbjct: 101 LRALRILHEFHLGDKKLTVKPDEKVRDDLRKNAIENRKRQGKKELKLKHDELPADEDD-- 158
Query: 242 QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKAD--QEALEKLTCMVEERLK 299
++K+E + + L ET +KE T G +++E +K +EK T
Sbjct: 159 --LKKDEEIRL-KILHWMETDHKELFSITEDGELSDETKKVKGHDSKIEKQTVPSSSSNP 215
Query: 300 TNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMI--RNDIAEDKLDDETTSDTKASD 357
+ S ++R +S R+ + + + +S +++S
Sbjct: 216 KKDEHKRNRNRRSRSRTRSRERTSRRSRSKESPRSKRSRRSRSSSNSSSESDSSSSRSSS 275
Query: 358 HD-RPETSSPDRSR 370
+ R + +P RSR
Sbjct: 276 YSSRSRSRTPQRSR 289
>UNIPROTKB|E2RQR0 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104356 EMBL:AAEX03005833
ProteinModelPortal:E2RQR0 PRIDE:E2RQR0 Ensembl:ENSCAFT00000037190
Uniprot:E2RQR0
Length = 211
Score = 180 (68.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 47 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 105
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 106 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 134
>UNIPROTKB|E9PQU5 [details] [associations]
symbol:RBM25 "RNA-binding protein 25" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL442663
EMBL:AC004858 HGNC:HGNC:23244 ChiTaRS:RBM25 IPI:IPI00982364
ProteinModelPortal:E9PQU5 SMR:E9PQU5 Ensembl:ENST00000531500
ArrayExpress:E9PQU5 Bgee:E9PQU5 Uniprot:E9PQU5
Length = 243
Score = 180 (68.4 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
>DICTYBASE|DDB_G0269926 [details] [associations]
symbol:DDB_G0269926 "splicing factor PWI
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 dictyBase:DDB_G0269926
EMBL:AAFI02000005 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:1.20.1390.10 eggNOG:NOG250187 SUPFAM:SSF101233
RefSeq:XP_646409.1 ProteinModelPortal:Q55CS2
EnsemblProtists:DDB0252841 GeneID:8617366 KEGG:ddi:DDB_G0269926
OMA:NEINDFY Uniprot:Q55CS2
Length = 724
Score = 201 (75.8 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 61/182 (33%), Positives = 88/182 (48%)
Query: 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188
T Y+GKI + F+ S+L CG V W RA +NG K FG CEFE AEG + ALR
Sbjct: 246 TTAYIGKIPQFVEDSFIRSLLNQCGKVSKWNRAS-DTNGKLKQFGLCEFEHAEGAVTALR 304
Query: 189 LLNKFNID--GQELMLKVDQATREYLERYVDXXXXXXXXXXXX-QDAGAGKEDESVQS-V 244
+LN +D G +L++KVD+ +++ Y+D QD ES+++ V
Sbjct: 305 VLNDLEVDRDGGKLVVKVDKG-QKFFSDYLDKKGGLTDQSSDSPQDIILR---ESIKAMV 360
Query: 245 EKN----EPTKSPENLKDNETGNKESHDPTN---FGVVTEEDRKADQEALEKLTCMVEER 297
EKN K E+ + N+ NK+ D T ++ +E K Q E+ E
Sbjct: 361 EKNFINIYEKKKMESNEINDFYNKDRRDLTKEEKIKIIEKEKEKEKQRHKERELKNKERD 420
Query: 298 LK 299
LK
Sbjct: 421 LK 422
>RGD|1565486 [details] [associations]
symbol:RGD1565486 "similar to RNA binding motif protein 25"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1565486 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OrthoDB:EOG498V0R IPI:IPI00948221
Ensembl:ENSRNOT00000064529 ArrayExpress:D3ZYI5 Uniprot:D3ZYI5
Length = 494
Score = 180 (68.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 55 (24.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
Identities = 19/67 (28%), Positives = 31/67 (46%)
Query: 236 KEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292
KEDE + ++E E + S E K +T +K+ D T +R+ + L +
Sbjct: 240 KEDEDINAIEMEEDKRDLISREISKFRDT-HKKHRDRTKEDEEDAYERRKLERKLREKEA 298
Query: 293 MVEERLK 299
+ERLK
Sbjct: 299 AYQERLK 305
Score = 47 (21.6 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 23/115 (20%), Positives = 42/115 (36%)
Query: 258 DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTTADGSGI 317
D K+++ VT +D +A E ++ M++ ++
Sbjct: 170 DEWKAKKKANGNARPETVTNDDEEALDEETKRRDQMIKGAIEVLIREYSSELNAPSQESD 229
Query: 318 SNSELPAKARDGDSDVDMIRNDIAEDKLD---DETTS--DTKASDHDRPETSSPD 367
S+ K + D D++ I ++ EDK D E + DT DR + D
Sbjct: 230 SHPRKKKKEKKEDEDINAI--EMEEDKRDLISREISKFRDTHKKHRDRTKEDEED 282
Score = 39 (18.8 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 376 ERDRKREKEELEEI 389
>ZFIN|ZDB-GENE-030131-5547 [details] [associations]
symbol:rbm25 "RNA binding motif protein 25"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
ZFIN:ZDB-GENE-030131-5547 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.20.1390.10
SUPFAM:SSF101233 GeneTree:ENSGT00700000104356 EMBL:AL928824
IPI:IPI00971796 Ensembl:ENSDART00000113929 Uniprot:E7F440
Length = 833
Score = 192 (72.6 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 44/119 (36%), Positives = 63/119 (52%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVE 245
LRLL++ + ++L++KVD T+ L+ + D AG+E+E V E
Sbjct: 144 LRLLHELQVGEKKLLVKVDAKTKAQLDEWKAKKKSTSANGNGKAD-DAGEEEEEVLDEE 201
Score = 41 (19.5 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 237 EDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL 290
+D+ V + P + +D E + GV TEE RK + +EK+
Sbjct: 683 DDDEVDEAPRKRKLV-PLDYEDEEKAVDGATVAGGKGVNTEEKRKHIKSLIEKI 735
Score = 39 (18.8 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 480 ERDRKREKEELEEI 493
>UNIPROTKB|I3LLA0 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0006915 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000381
GeneTree:ENSGT00700000104356 EMBL:CU633699
Ensembl:ENSSSCT00000032106 Uniprot:I3LLA0
Length = 513
Score = 180 (68.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 48 (22.0 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 235 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 293
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 294 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 353
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 354 KASDHDRPETSSPDRSR 370
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
>MGI|MGI:1914289 [details] [associations]
symbol:Rbm25 "RNA binding motif protein 25" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISO] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00311 SMART:SM00360 MGI:MGI:1914289
GO:GO:0005737 GO:GO:0006915 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
Gene3D:1.20.1390.10 GO:GO:0000381 CTD:58517 eggNOG:NOG250187
KO:K12822 OMA:EDINAME OrthoDB:EOG498V0R SUPFAM:SSF101233
EMBL:AK011184 EMBL:AK011403 EMBL:AK076553 EMBL:AK142132
EMBL:AK151910 EMBL:AK164367 EMBL:BC158104 EMBL:BC010792
EMBL:BC066150 EMBL:BC067400 IPI:IPI00421119 IPI:IPI00662049
IPI:IPI00928541 RefSeq:NP_081625.3 UniGene:Mm.46005
ProteinModelPortal:B2RY56 SMR:B2RY56 IntAct:B2RY56 STRING:B2RY56
PhosphoSite:B2RY56 PaxDb:B2RY56 PRIDE:B2RY56
Ensembl:ENSMUST00000048155 GeneID:67039 KEGG:mmu:67039
UCSC:uc007odj.1 UCSC:uc007odl.1 GeneTree:ENSGT00700000104356
InParanoid:Q8BVT8 NextBio:323382 Bgee:B2RY56 Genevestigator:B2RY56
Uniprot:B2RY56
Length = 838
Score = 180 (68.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 52 (23.4 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 23/135 (17%), Positives = 53/135 (39%)
Query: 235 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 295 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERER-DRDRDRT 353
Query: 295 EERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTK 354
+ER + + + S K+RD + + + R E + + E + +
Sbjct: 354 KERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERERE 413
Query: 355 AS-DHDRPETSSPDR 368
+ +R + DR
Sbjct: 414 REREREREKDKKRDR 428
Score = 48 (22.0 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 325 KARDGDSDVDMIRN-DIAEDKLDDETTSDTKASDHDRPETSSPDRSR 370
+ RD D D R+ D D+ D S + D R S DR R
Sbjct: 344 RERDRDRDRTKERDRDRERDRDRDRERSSDRNKDRSRSREKSRDRER 390
Score = 40 (19.1 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 347 DETTSDTKASDHDRPETSSPD 367
DE + KA+ + RPET + D
Sbjct: 170 DEWKAKKKANGNARPETVTND 190
Score = 39 (18.8 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 528 ERDRKREKEELEEI 541
>UNIPROTKB|E1BHM5 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0005737 GO:GO:0006915 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 Gene3D:1.20.1390.10
GO:GO:0000381 CTD:58517 KO:K12822 OMA:EDINAME SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:DAAA02029591 EMBL:DAAA02029588
EMBL:DAAA02029589 EMBL:DAAA02029590 IPI:IPI00692901
RefSeq:XP_002691044.2 RefSeq:XP_884737.3 UniGene:Bt.109575
Ensembl:ENSBTAT00000022826 GeneID:540258 KEGG:bta:540258
ArrayExpress:E1BHM5 Uniprot:E1BHM5
Length = 843
Score = 180 (68.4 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 48 (22.0 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 235 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 293
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 294 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 353
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 354 KASDHDRPETSSPDRSR 370
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
Score = 39 (18.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 533 ERDRKREKEELEEI 546
>UNIPROTKB|P49756 [details] [associations]
symbol:RBM25 "RNA-binding protein 25" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00311 SMART:SM00360 GO:GO:0005737
GO:GO:0006915 EMBL:CH471061 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
Gene3D:1.20.1390.10 GO:GO:0000381 EMBL:AL442663 EMBL:AF109907
EMBL:AC004858 EMBL:AK026107 EMBL:AK094697 EMBL:BC062440
EMBL:BC083496 EMBL:BC111066 EMBL:BC113389 EMBL:BC113391
EMBL:BC136775 EMBL:BC136776 EMBL:BC144407 EMBL:L40392
IPI:IPI00004273 IPI:IPI00924634 IPI:IPI00925670 IPI:IPI00926163
RefSeq:NP_067062.1 UniGene:Hs.531106 PDB:3V53 PDBsum:3V53
ProteinModelPortal:P49756 SMR:P49756 IntAct:P49756
MINT:MINT-4545359 STRING:P49756 PhosphoSite:P49756 DMDM:226693631
PaxDb:P49756 PRIDE:P49756 DNASU:58517 Ensembl:ENST00000261973
Ensembl:ENST00000525321 Ensembl:ENST00000526754
Ensembl:ENST00000527432 Ensembl:ENST00000528081
Ensembl:ENST00000540173 GeneID:58517 KEGG:hsa:58517 UCSC:uc001xnn.4
UCSC:uc001xno.3 CTD:58517 GeneCards:GC14P073525 HGNC:HGNC:23244
HPA:HPA003025 MIM:612427 neXtProt:NX_P49756 PharmGKB:PA134912024
eggNOG:NOG250187 HOVERGEN:HBG068941 InParanoid:P49756 KO:K12822
OMA:EDINAME OrthoDB:EOG498V0R PhylomeDB:P49756 ChiTaRS:RBM25
GenomeRNAi:58517 NextBio:65066 ArrayExpress:P49756 Bgee:P49756
CleanEx:HS_RBM25 Genevestigator:P49756 GermOnline:ENSG00000119707
SUPFAM:SSF101233 Uniprot:P49756
Length = 843
Score = 180 (68.4 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 85 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 143
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 144 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 172
Score = 48 (22.0 bits), Expect = 5.2e-11, Sum P(2) = 5.2e-11
Identities = 22/137 (16%), Positives = 52/137 (37%)
Query: 235 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA-LEKLTCM 293
GK+++ Q +EK + E ++ E +E E++R+ ++E ++
Sbjct: 296 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERERDRDRDRTK 355
Query: 294 VEERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDT 353
+R + + + S K+RD + + + R E + + E +
Sbjct: 356 ERDRDRDRERDRDRDRERSSDRNKDRSRSREKSRDRERERERERERERERERERERERE- 414
Query: 354 KASDHDRPETSSPDRSR 370
+ + +R D+ R
Sbjct: 415 REREREREREREKDKKR 431
Score = 39 (18.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 533 ERDRKREKEELEEI 546
>UNIPROTKB|E1BSR5 [details] [associations]
symbol:RBM25 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0005737 GO:GO:0006915 GO:GO:0000166 GO:GO:0016607
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 Gene3D:1.20.1390.10
GO:GO:0000381 OMA:EDINAME SUPFAM:SSF101233
GeneTree:ENSGT00700000104356 EMBL:AADN02033574 EMBL:AADN02033573
IPI:IPI00591819 Ensembl:ENSGALT00000015198 Uniprot:E1BSR5
Length = 782
Score = 180 (68.4 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P T V+VG I+ A + +L CG V SWKR Q S G + FGFCE++ E LRA
Sbjct: 43 PTTTVFVGNISEKASDMLIRQLLAKCGLVLSWKRVQGAS-GKLQAFGFCEYKEPESTLRA 101
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
LRLL+ I ++L++KVD T+ L+ +
Sbjct: 102 LRLLHDLQIGEKKLLVKVDAKTKAQLDEW 130
Score = 47 (21.6 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 235 GKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285
GK+++ Q +EK + E ++ E +E E++R+ ++E
Sbjct: 243 GKKEKERQEIEKERRERERERERERERREREREREREREREKEKERERERE 293
Score = 47 (21.6 bits), Expect = 5.3e-11, Sum P(2) = 5.3e-11
Identities = 30/137 (21%), Positives = 50/137 (36%)
Query: 238 DESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294
+E + ++E E + S E K +T K + G +E ++ ++E E+
Sbjct: 208 EEDINAIEMEEDKRDLISREISKFRDTHKKLEEEK---GKKEKERQEIEKERRERERERE 264
Query: 295 EERLKTNXXXXXXXQTTADGSGISNSELPA-KARDGDSDVDMIRNDIAEDKLDDETTSDT 353
ER + + + E + RD D D R + D E +SD
Sbjct: 265 RERERREREREREREREREKEKERERERERDRDRDRTKDRDRDRERDRDRDRDRERSSD- 323
Query: 354 KASDHDRPETSSPDRSR 370
+ D R S DR R
Sbjct: 324 RNKDRSRSREKSRDRER 340
Score = 45 (20.9 bits), Expect = 8.6e-11, Sum P(2) = 8.6e-11
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 237 EDESVQSVEKNEPTKSPENLKDNETGNKESHDPT 270
E+E + EK E + PE ++ E K PT
Sbjct: 523 EEEEEEKAEKEEKREEPEE-EEEEPEQKPCLKPT 555
Score = 42 (19.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 347 DETTSDTKASD-HDRPETSSPD 367
DE + KAS+ + RPET++ D
Sbjct: 128 DEWKAKKKASNGNSRPETTNDD 149
Score = 39 (18.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 277 EEDRKADQEALEKL 290
E DRK ++E LE++
Sbjct: 472 ERDRKREKEELEEI 485
Score = 39 (18.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 24/106 (22%), Positives = 37/106 (34%)
Query: 252 SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTT 311
S + N T N D + G++ + DQ+ E+ + LK
Sbjct: 564 SVSSASGNATPNTPG-DESPCGIIIPHENSPDQQQPEEHRPKIGLSLKLGACNSPNQPNA 622
Query: 312 ADGSGISNSELPAKARDGDSD-VDMIRNDIAEDKLDDETTSDTKAS 356
++ + K D DSD V R + D DE S+ K S
Sbjct: 623 VKRKKLAVDSVFNKFDDEDSDDVPRKRKLVPLD-YGDEDKSNIKGS 667
>FB|FBgn0028474 [details] [associations]
symbol:CG4119 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] InterPro:IPR000504
InterPro:IPR002483 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480
PROSITE:PS50102 PROSITE:PS51025 SMART:SM00311 SMART:SM00360
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 Gene3D:1.20.1390.10 GO:GO:0000381
KO:K12822 SUPFAM:SSF101233 GeneTree:ENSGT00700000104356 OMA:VENDFMM
EMBL:AF181653 RefSeq:NP_572242.1 UniGene:Dm.7639 SMR:Q9V3Y5
EnsemblMetazoa:FBtr0070799 GeneID:31481 KEGG:dme:Dmel_CG4119
UCSC:CG4119-RA FlyBase:FBgn0028474 InParanoid:Q9V3Y5
OrthoDB:EOG4WH72B GenomeRNAi:31481 NextBio:773859 Uniprot:Q9V3Y5
Length = 998
Score = 146 (56.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 32/89 (35%), Positives = 47/89 (52%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P V+VG I+ + +L CG V +WKR FGFCEF+ +RA
Sbjct: 59 PIITVFVGNISERVPEALLKRILNACGVVINWKRVST--------FGFCEFDGPIAAMRA 110
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLERY 215
+RLL++ IDG++L+ KVD + +E Y
Sbjct: 111 VRLLSEMEIDGKKLVAKVDAKNKVLIEDY 139
Score = 54 (24.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 37/146 (25%), Positives = 56/146 (38%)
Query: 233 GAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEED--RKA--DQEALE 288
G+ ++ + E + EN + E N S + F + EED RK ++ E
Sbjct: 190 GSANRNKKTRREEDIKMKVLSENTLEEEKRNLISSEIGKFRMRAEEDEHRKELEKEKEKE 249
Query: 289 KLTCMVEERLKTNXXXXXXXQTTADGSG----ISNSELPAKARDGDSD-VDMIRNDIAED 343
KL E+ K T+ GS S+S A + +D DM E
Sbjct: 250 KLAASKEKERKKQREMERMSSTSKSGSSSTAAASSSSATATSSTPAADGADMSDKTDKES 309
Query: 344 K--LDDETTSDTK--ASDHDRPETSS 365
+ ET ++K AS R E+SS
Sbjct: 310 VAVVIKETVKESKESASSTGRKESSS 335
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 325 KARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPETSS 365
K R +D D+A DD ++D +AS D +S
Sbjct: 610 KQRQKSQQLDSYDPDMAGTNDDDSISNDDRASMADTASNAS 650
Score = 42 (19.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 23/136 (16%), Positives = 48/136 (35%)
Query: 236 KEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295
+EDE + +EK + + K+ E K+ + T + + A +
Sbjct: 234 EEDEHRKELEKEKEKEKLAASKEKE--RKKQREMERMSS-TSKSGSSSTAAASSSSATAT 290
Query: 296 ERLKTNXXXXXXXQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDD-ETTSDTK 354
+T + + E ++++ S + A ++ E SD+K
Sbjct: 291 SSTPAADGADMSDKTDKESVAVVIKETVKESKESASSTGRKESSSAAIEITQKERRSDSK 350
Query: 355 ASDHDRPETSSPDRSR 370
+ R ++ S DR R
Sbjct: 351 ETRRRRSKSRSKDRER 366
>GENEDB_PFALCIPARUM|PFF0505c [details] [associations]
symbol:PFF0505c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 52/243 (21%), Positives = 97/243 (39%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
+Y+G I + + ++ +L++ G V W+R + PS FGFCEF V + +L
Sbjct: 42 MYIGNIDKYIEDNDMVKMLEIFGNVIKWQRQRNPSTNELMAFGFCEFSDIYEVYLCMNIL 101
Query: 191 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVEKNEPT 250
+ + + L + ++ ER VD KE+ + ++ E
Sbjct: 102 DNIKLGDKHLKVNCSDNLKKMFERIVDVMYEKREEI---------KEEHKERDMQYEENE 152
Query: 251 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQT 310
KS EN K E E ++ + EE+ + E L+ L + +E +
Sbjct: 153 KSEENEKSEENEKNEENEKS------EENE--ENEKLKLLNYINKEMATKKMEIMKFIER 204
Query: 311 TADGSGISNSELPAKARDGDSDVDMIRNDIAED-KLDDETTSDTKASDHDRPETSSPDRS 369
N E K ++ D+ +I N+I + +D ++ +DH + D +
Sbjct: 205 V-------NEESDEKKKENDT---IINNEINNNIDTNDHINNNINTNDHINNNIDTNDNT 254
Query: 370 RVH 372
+VH
Sbjct: 255 KVH 257
>UNIPROTKB|C6KSU9 [details] [associations]
symbol:PFF0505c "Putative uncharacterized protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002483
InterPro:IPR012677 Pfam:PF00076 Pfam:PF01480 PROSITE:PS50102
PROSITE:PS51025 SMART:SM00360 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL844505 RefSeq:XP_966092.1
ProteinModelPortal:C6KSU9 IntAct:C6KSU9
EnsemblProtists:PFF0505c:mRNA GeneID:3885919 KEGG:pfa:PFF0505c
EuPathDB:PlasmoDB:PF3D7_0610200 OMA:INWRERE ProtClustDB:CLSZ2515317
Uniprot:C6KSU9
Length = 960
Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 52/243 (21%), Positives = 97/243 (39%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
+Y+G I + + ++ +L++ G V W+R + PS FGFCEF V + +L
Sbjct: 42 MYIGNIDKYIEDNDMVKMLEIFGNVIKWQRQRNPSTNELMAFGFCEFSDIYEVYLCMNIL 101
Query: 191 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVEKNEPT 250
+ + + L + ++ ER VD KE+ + ++ E
Sbjct: 102 DNIKLGDKHLKVNCSDNLKKMFERIVDVMYEKREEI---------KEEHKERDMQYEENE 152
Query: 251 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQT 310
KS EN K E E ++ + EE+ + E L+ L + +E +
Sbjct: 153 KSEENEKSEENEKNEENEKS------EENE--ENEKLKLLNYINKEMATKKMEIMKFIER 204
Query: 311 TADGSGISNSELPAKARDGDSDVDMIRNDIAED-KLDDETTSDTKASDHDRPETSSPDRS 369
N E K ++ D+ +I N+I + +D ++ +DH + D +
Sbjct: 205 V-------NEESDEKKKENDT---IINNEINNNIDTNDHINNNINTNDHINNNIDTNDNT 254
Query: 370 RVH 372
+VH
Sbjct: 255 KVH 257
>POMBASE|SPAC644.16 [details] [associations]
symbol:SPAC644.16 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005849 "mRNA
cleavage factor complex" evidence=ISO] [GO:0006378 "mRNA
polyadenylation" evidence=ISO] [GO:0006379 "mRNA cleavage"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC644.16 EMBL:CU329670
GO:GO:0000166 Gene3D:3.30.70.330 eggNOG:NOG246793 GO:GO:0006378
GO:GO:0003723 GO:GO:0006379 GO:GO:0005849 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4GQTF6 HSSP:P33240 RefSeq:NP_593884.1
ProteinModelPortal:Q9P6P7 EnsemblFungi:SPAC644.16.1 GeneID:2543462
KEGG:spo:SPAC644.16 OMA:SHEERAN NextBio:20804474 Uniprot:Q9P6P7
Length = 422
Score = 135 (52.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 32/88 (36%), Positives = 44/88 (50%)
Query: 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRA 186
P VYVG I + V+ + K G VKS++ P +G PKG+GFCE+ A
Sbjct: 3 PSCVVYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDPATAASA 62
Query: 187 LRLLNKFNIDGQELMLKVDQATREYLER 214
+R LN N D L+VD T + + R
Sbjct: 63 VRNLN--NYDAGTRRLRVDFPTADQIRR 88
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 131 (51.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 184
+K V+VG I A + + + G V S K +G PKGFGFCE++ E L
Sbjct: 12 DKSMRSVFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETAL 71
Query: 185 RALRLLNKFNIDGQELMLKVDQATRE 210
A+R LN + I G+ L +VD A E
Sbjct: 72 SAMRNLNGYEIGGRTL--RVDNACTE 95
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 131 (51.2 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV I P D + SV + G +KS A+ P+ G KGFGF E+E + L A+
Sbjct: 184 RIYVASIHPDLSDDDIKSVFEAFGKIKSCMLAREPTTGKHKGFGFIEYEKPQSSLDAVSS 243
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 244 MNLFDLGGQYL 254
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 106 (42.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 26/77 (33%), Positives = 37/77 (48%)
Query: 134 GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF 193
G I A + + + G V S++ G PKG+GFCE++ E L A+R LN
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 194 NIDGQELMLKVDQATRE 210
G+ L +VD A E
Sbjct: 62 EFSGRAL--RVDNAASE 76
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 125 (49.1 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 40/146 (27%), Positives = 62/146 (42%)
Query: 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVL 184
++ Q V+VG I+ D + S+ G V S K G PKG+GF EF +
Sbjct: 14 DRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAE 73
Query: 185 RALRLLNKFNIDGQELMLKVDQATREY-LERYVDXXXXXXXXXXX--XQDAGAGKEDESV 241
A+R LN + + G+ +L+VD A +E + + AGK E +
Sbjct: 74 VAIRNLNGYELSGR--ILRVDSAAGGMNMEEFGSSSNAPAPVEENPYGPECDAGKAPERI 131
Query: 242 -QSVEKNEPTKSPENLKDNETGNKES 266
Q+V P K E +K + K +
Sbjct: 132 SQTVASLAPEKMFELMKQLQESLKNN 157
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 125 (49.1 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 24/71 (33%), Positives = 40/71 (56%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + P D + SV + G +KS A+ P+ G KG+GF E++ A+ A+
Sbjct: 191 RIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSS 250
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 251 MNLFDLGGQYL 261
Score = 42 (19.8 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 17/84 (20%), Positives = 36/84 (42%)
Query: 266 SHDPT-NFGVVTEEDRKADQEALEKLTCMVEERLKTNXXXXXXXQTTADGSGISNSELPA 324
S PT + V ++ K ++E E L + + + + + GS + +
Sbjct: 379 SSPPTLSAAVAAAQEAKKEKEEEEALLDGLGQEMLSEQE-----HMSISGSSARHMVMQK 433
Query: 325 KARDGDSDVDMIRNDIAEDKLDDE 348
R +S V ++RN + + +DD+
Sbjct: 434 LLRKQESTVMVLRNMVGPEDIDDD 457
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V++G I + V +L GTV ++ P G PKG+GF +F A+ A+R L
Sbjct: 10 VFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAASAVRNL 69
Query: 191 NKFNIDGQELMLKVD 205
N + I G+++ +VD
Sbjct: 70 NDYEIMGRKI--RVD 82
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 117 (46.2 bits), Expect = 0.00030, P = 0.00030
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 209 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 268
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 269 MNLFDLGGQYL 279
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 119 (46.9 bits), Expect = 0.00031, P = 0.00031
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 82 NGREFSGRAL--RVDNAASE 99
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 117 (46.2 bits), Expect = 0.00033, P = 0.00033
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 225 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 284
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 285 MNLFDLGGQYL 295
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 184 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 243
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 244 MNLFDLGGQYL 254
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 119 (46.9 bits), Expect = 0.00044, P = 0.00044
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 119 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 178
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 179 MNLFDLGGQYL 189
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 119 (46.9 bits), Expect = 0.00051, P = 0.00051
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 119 (46.9 bits), Expect = 0.00051, P = 0.00051
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 117 (46.2 bits), Expect = 0.00052, P = 0.00052
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 119 (46.9 bits), Expect = 0.00053, P = 0.00053
Identities = 28/80 (35%), Positives = 41/80 (51%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G+V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 117 (46.2 bits), Expect = 0.00058, P = 0.00058
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 118 (46.6 bits), Expect = 0.00061, P = 0.00061
Identities = 34/126 (26%), Positives = 53/126 (42%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATREYLERYVDXXXXXXXXXXXXQDAGAGKEDESVQSVEKNEPT 250
N G+ L +VD A E + + ED + +S+ K +
Sbjct: 78 NGREFSGRAL--RVDNAASEKNKEELKSLGTGAPVIESPYGESISPED-APESISKAVAS 134
Query: 251 KSPENL 256
PE +
Sbjct: 135 LPPEQM 140
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 86 NGREFSGRAL--RVDNAASE 103
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 117 (46.2 bits), Expect = 0.00065, P = 0.00065
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 190 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 249
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 250 MNLFDLGGQYL 260
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 258 MNLFDLGGQYL 268
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 117 (46.2 bits), Expect = 0.00069, P = 0.00069
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 198 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 257
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 258 MNLFDLGGQYL 268
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 117 (46.2 bits), Expect = 0.00071, P = 0.00071
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 211 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 270
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 271 MNLFDLGGQYL 281
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 117 (46.2 bits), Expect = 0.00072, P = 0.00072
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 117 (46.2 bits), Expect = 0.00073, P = 0.00073
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 227 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 286
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 287 MNLFDLGGQYL 297
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 117 (46.2 bits), Expect = 0.00074, P = 0.00074
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 228 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 287
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 288 MNLFDLGGQYL 298
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 117 (46.2 bits), Expect = 0.00075, P = 0.00075
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 292 MNLFDLGGQYL 302
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 117 (46.2 bits), Expect = 0.00075, P = 0.00075
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189
++YV + D + SV + G +KS A+ P+ G KG+GF E+E A+ A+
Sbjct: 232 RIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 291
Query: 190 LNKFNIDGQEL 200
+N F++ GQ L
Sbjct: 292 MNLFDLGGQYL 302
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 117 (46.2 bits), Expect = 0.00076, P = 0.00076
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 117 (46.2 bits), Expect = 0.00076, P = 0.00076
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 117 (46.2 bits), Expect = 0.00077, P = 0.00077
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 117 (46.2 bits), Expect = 0.00077, P = 0.00077
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 117 (46.2 bits), Expect = 0.00077, P = 0.00077
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 117 (46.2 bits), Expect = 0.00080, P = 0.00080
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 117 (46.2 bits), Expect = 0.00081, P = 0.00081
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 117 (46.2 bits), Expect = 0.00083, P = 0.00083
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 117 (46.2 bits), Expect = 0.00090, P = 0.00090
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190
V+VG I A + + + G V S++ G PKG+GFCE++ E L A+R L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 191 NKFNIDGQELMLKVDQATRE 210
N G+ L +VD A E
Sbjct: 78 NGREFSGRAL--RVDNAASE 95
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.129 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 567 368 0.00085 117 3 11 23 0.46 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 59
No. of states in DFA: 614 (65 KB)
Total size of DFA: 247 KB (2133 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 34.70u 0.07s 34.77t Elapsed: 00:00:04
Total cpu time: 34.70u 0.07s 34.77t Elapsed: 00:00:04
Start: Tue May 21 03:27:20 2013 End: Tue May 21 03:27:24 2013