Query 008385
Match_columns 567
No_of_seqs 536 out of 3211
Neff 7.8
Searched_HMMs 46136
Date Thu Mar 28 23:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 1.5E-24 3.2E-29 225.2 21.5 156 125-295 104-260 (346)
2 KOG2253 U1 snRNP complex, subu 99.9 2.6E-24 5.7E-29 227.8 21.1 339 126-523 38-386 (668)
3 TIGR01645 half-pint poly-U bin 99.9 8.9E-23 1.9E-27 222.5 13.6 164 126-293 105-269 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.8E-22 4E-27 212.1 15.0 154 127-295 2-156 (352)
5 TIGR01622 SF-CC1 splicing fact 99.9 4.5E-21 9.8E-26 208.7 14.8 166 124-293 85-251 (457)
6 TIGR01628 PABP-1234 polyadenyl 99.9 4.1E-21 8.9E-26 214.2 14.2 146 130-294 2-153 (562)
7 KOG0148 Apoptosis-promoting RN 99.8 4.3E-21 9.3E-26 183.4 10.9 159 126-293 60-223 (321)
8 KOG0144 RNA-binding protein CU 99.8 4.1E-20 8.9E-25 186.6 12.5 162 123-298 29-193 (510)
9 KOG0145 RNA-binding protein EL 99.8 8.1E-20 1.8E-24 173.4 13.1 154 125-293 38-192 (360)
10 KOG0117 Heterogeneous nuclear 99.8 7.2E-20 1.6E-24 185.7 13.4 143 126-290 81-228 (506)
11 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.5E-20 1.6E-24 192.3 13.5 167 128-294 89-335 (352)
12 TIGR01648 hnRNP-R-Q heterogene 99.8 9.9E-20 2.2E-24 198.6 14.7 144 127-292 57-204 (578)
13 KOG0131 Splicing factor 3b, su 99.8 4.3E-20 9.3E-25 167.3 9.8 155 127-295 8-164 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.8 2.5E-19 5.4E-24 199.9 14.1 166 126-293 176-349 (562)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.8 3.4E-19 7.4E-24 196.6 13.8 166 123-295 170-362 (509)
16 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 3.1E-18 6.8E-23 187.1 18.5 165 125-295 272-461 (481)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.9E-18 6.3E-23 189.2 15.5 167 126-294 293-488 (509)
18 KOG4661 Hsp27-ERE-TATA-binding 99.8 2.3E-16 5E-21 163.6 26.0 83 125-207 402-484 (940)
19 KOG0124 Polypyrimidine tract-b 99.8 7.9E-19 1.7E-23 173.5 6.7 155 127-293 112-275 (544)
20 KOG0127 Nucleolar protein fibr 99.7 1.2E-17 2.7E-22 173.0 9.7 166 128-293 5-181 (678)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 3.3E-17 7.2E-22 179.1 12.5 155 127-294 1-158 (481)
22 KOG0127 Nucleolar protein fibr 99.7 5.6E-17 1.2E-21 168.2 11.7 158 127-290 116-354 (678)
23 KOG0123 Polyadenylate-binding 99.7 3.5E-17 7.7E-22 171.0 9.1 135 129-297 2-142 (369)
24 KOG0109 RNA-binding protein LA 99.7 4.3E-17 9.4E-22 157.5 8.4 133 129-295 3-137 (346)
25 TIGR01622 SF-CC1 splicing fact 99.7 2.4E-16 5.2E-21 171.7 14.0 79 128-206 186-264 (457)
26 KOG0117 Heterogeneous nuclear 99.7 9.7E-17 2.1E-21 163.2 9.1 150 126-293 162-316 (506)
27 PLN03134 glycine-rich RNA-bind 99.7 6.6E-16 1.4E-20 141.1 11.5 82 126-207 32-113 (144)
28 TIGR01648 hnRNP-R-Q heterogene 99.6 4.2E-16 9.1E-21 170.3 11.2 149 127-293 137-292 (578)
29 KOG0146 RNA-binding protein ET 99.6 5.5E-16 1.2E-20 148.0 9.1 90 117-206 274-363 (371)
30 KOG0147 Transcriptional coacti 99.6 2.4E-16 5.1E-21 164.6 6.1 169 123-293 174-343 (549)
31 KOG0123 Polyadenylate-binding 99.6 9.7E-16 2.1E-20 160.3 10.7 150 131-296 79-234 (369)
32 KOG0113 U1 small nuclear ribon 99.6 2E-14 4.4E-19 139.8 14.1 83 125-207 98-180 (335)
33 KOG0145 RNA-binding protein EL 99.6 4.1E-15 8.8E-20 141.6 9.1 162 127-293 126-343 (360)
34 KOG0110 RNA-binding protein (R 99.6 4.3E-15 9.3E-20 159.1 9.9 154 128-292 515-677 (725)
35 KOG0121 Nuclear cap-binding pr 99.6 4.1E-15 8.8E-20 127.5 7.2 84 125-208 33-116 (153)
36 PF00076 RRM_1: RNA recognitio 99.5 3.3E-14 7.2E-19 112.8 9.5 70 131-201 1-70 (70)
37 KOG0125 Ataxin 2-binding prote 99.5 1.4E-13 3E-18 135.5 14.2 82 125-208 93-174 (376)
38 KOG0122 Translation initiation 99.5 3.1E-13 6.7E-18 128.3 13.2 82 126-207 187-268 (270)
39 KOG4205 RNA-binding protein mu 99.5 1.6E-14 3.4E-19 146.3 4.3 154 127-290 5-159 (311)
40 KOG0149 Predicted RNA-binding 99.5 6E-14 1.3E-18 132.8 7.1 81 125-206 9-89 (247)
41 KOG0415 Predicted peptidyl pro 99.5 2.2E-13 4.8E-18 134.9 10.7 86 125-210 236-321 (479)
42 PLN03213 repressor of silencin 99.5 4.9E-13 1.1E-17 137.4 12.3 85 126-216 8-94 (759)
43 KOG0126 Predicted RNA-binding 99.4 1.6E-14 3.5E-19 131.1 0.6 80 126-205 33-112 (219)
44 KOG0105 Alternative splicing f 99.4 4.7E-13 1E-17 121.8 9.2 155 126-293 4-173 (241)
45 PF14259 RRM_6: RNA recognitio 99.4 8.6E-13 1.9E-17 105.1 9.6 70 131-201 1-70 (70)
46 TIGR01645 half-pint poly-U bin 99.4 6.7E-13 1.5E-17 145.6 11.2 82 126-207 202-283 (612)
47 KOG0107 Alternative splicing f 99.4 4.7E-13 1E-17 121.2 7.9 77 127-208 9-85 (195)
48 PLN03120 nucleic acid binding 99.4 9.7E-13 2.1E-17 128.8 10.5 76 128-207 4-79 (260)
49 KOG4207 Predicted splicing fac 99.4 3.7E-13 8.1E-18 124.6 7.1 82 126-207 11-92 (256)
50 TIGR01659 sex-lethal sex-letha 99.4 1.2E-12 2.7E-17 136.2 10.7 81 127-207 192-274 (346)
51 KOG4206 Spliceosomal protein s 99.4 1.6E-12 3.4E-17 123.0 10.0 153 128-293 9-206 (221)
52 KOG0146 RNA-binding protein ET 99.4 2.9E-12 6.3E-17 122.8 11.2 82 127-209 18-102 (371)
53 PLN03121 nucleic acid binding 99.3 5.1E-12 1.1E-16 121.9 10.2 76 127-206 4-79 (243)
54 smart00362 RRM_2 RNA recogniti 99.3 1E-11 2.2E-16 97.7 9.7 71 130-202 1-71 (72)
55 KOG0111 Cyclophilin-type pepti 99.3 1.5E-12 3.3E-17 121.4 4.3 84 126-209 8-91 (298)
56 KOG0108 mRNA cleavage and poly 99.3 5.2E-12 1.1E-16 133.5 8.3 82 129-210 19-100 (435)
57 KOG0147 Transcriptional coacti 99.3 8.9E-12 1.9E-16 130.7 9.7 77 128-204 278-354 (549)
58 KOG0130 RNA-binding protein RB 99.3 7E-12 1.5E-16 108.6 7.1 80 127-206 71-150 (170)
59 smart00360 RRM RNA recognition 99.3 2.4E-11 5.2E-16 95.2 9.1 70 133-202 1-70 (71)
60 KOG0148 Apoptosis-promoting RN 99.3 1.8E-11 3.8E-16 117.9 9.4 77 125-207 161-237 (321)
61 KOG1457 RNA binding protein (c 99.3 4.8E-11 1E-15 111.9 11.9 163 127-295 33-273 (284)
62 KOG0114 Predicted RNA-binding 99.3 5.2E-11 1.1E-15 98.7 10.6 82 127-211 17-98 (124)
63 COG0724 RNA-binding proteins ( 99.3 2.3E-11 5E-16 121.4 10.3 124 128-251 115-247 (306)
64 KOG4212 RNA-binding protein hn 99.2 8.4E-11 1.8E-15 119.6 13.4 165 127-292 43-278 (608)
65 KOG0144 RNA-binding protein CU 99.2 5.4E-11 1.2E-15 121.2 11.4 85 123-207 419-503 (510)
66 cd00590 RRM RRM (RNA recogniti 99.2 1.4E-10 3E-15 91.7 10.2 73 130-203 1-73 (74)
67 KOG0124 Polypyrimidine tract-b 99.2 1.9E-11 4.1E-16 121.7 4.7 117 91-207 164-289 (544)
68 KOG4211 Splicing factor hnRNP- 99.2 2.4E-10 5.1E-15 118.7 12.5 163 127-297 9-172 (510)
69 smart00361 RRM_1 RNA recogniti 99.1 4E-10 8.7E-15 89.9 8.6 61 142-202 2-69 (70)
70 KOG0106 Alternative splicing f 99.1 8.4E-11 1.8E-15 112.4 5.2 151 129-295 2-158 (216)
71 PF13893 RRM_5: RNA recognitio 99.1 9.7E-10 2.1E-14 83.6 8.6 56 145-205 1-56 (56)
72 KOG1548 Transcription elongati 99.0 2E-09 4.3E-14 107.3 12.0 172 120-295 126-339 (382)
73 KOG0226 RNA-binding proteins [ 99.0 2.7E-09 5.8E-14 102.3 12.3 86 125-210 187-272 (290)
74 KOG0131 Splicing factor 3b, su 99.0 3.9E-10 8.6E-15 103.0 5.7 81 127-207 95-176 (203)
75 KOG4208 Nucleolar RNA-binding 99.0 1.9E-09 4.1E-14 100.7 8.2 84 125-208 46-130 (214)
76 KOG0109 RNA-binding protein LA 98.9 7.5E-10 1.6E-14 107.8 5.1 76 125-208 75-150 (346)
77 KOG4454 RNA binding protein (R 98.9 9.1E-10 2E-14 103.2 4.0 135 127-287 8-142 (267)
78 KOG0120 Splicing factor U2AF, 98.9 3.2E-09 6.9E-14 113.1 7.5 166 126-293 287-477 (500)
79 KOG4676 Splicing factor, argin 98.9 1.1E-09 2.3E-14 110.4 3.7 79 128-207 7-89 (479)
80 KOG0132 RNA polymerase II C-te 98.8 1.2E-08 2.6E-13 110.9 7.6 75 128-208 421-495 (894)
81 KOG1190 Polypyrimidine tract-b 98.8 8.3E-08 1.8E-12 97.6 12.8 155 128-291 297-473 (492)
82 KOG0153 Predicted RNA-binding 98.8 2.2E-08 4.7E-13 100.1 8.2 80 122-207 222-302 (377)
83 KOG0110 RNA-binding protein (R 98.7 1.1E-08 2.4E-13 110.5 5.6 86 125-210 610-695 (725)
84 KOG4676 Splicing factor, argin 98.7 8.5E-09 1.9E-13 104.1 3.5 67 125-196 148-214 (479)
85 KOG0151 Predicted splicing reg 98.7 8.3E-08 1.8E-12 103.5 9.5 89 120-208 166-257 (877)
86 KOG0226 RNA-binding proteins [ 98.6 1E-07 2.2E-12 91.6 8.1 153 128-293 96-255 (290)
87 KOG4212 RNA-binding protein hn 98.6 9.9E-08 2.1E-12 97.6 7.5 75 125-204 533-607 (608)
88 KOG0116 RasGAP SH3 binding pro 98.6 3.2E-07 7E-12 96.8 10.8 77 127-204 287-363 (419)
89 KOG0120 Splicing factor U2AF, 98.5 1.4E-07 3.1E-12 100.7 7.7 165 122-294 169-355 (500)
90 KOG4209 Splicing factor RNPS1, 98.5 1.2E-07 2.7E-12 93.0 6.2 80 125-205 98-177 (231)
91 KOG0533 RRM motif-containing p 98.5 3.2E-07 6.9E-12 89.9 8.7 82 125-207 80-161 (243)
92 KOG0128 RNA-binding protein SA 98.4 2.8E-08 6.1E-13 109.4 -1.5 137 127-295 666-802 (881)
93 KOG4205 RNA-binding protein mu 98.4 3.2E-07 7E-12 93.4 5.8 83 127-210 96-178 (311)
94 KOG2416 Acinus (induces apopto 98.4 4.9E-07 1.1E-11 95.9 6.9 78 124-207 440-521 (718)
95 KOG0129 Predicted RNA-binding 98.3 2.3E-05 5.1E-10 82.7 16.3 162 125-289 256-432 (520)
96 KOG1456 Heterogeneous nuclear 98.3 3.9E-05 8.4E-10 77.7 17.1 162 125-295 284-472 (494)
97 KOG4210 Nuclear localization s 98.3 8.3E-07 1.8E-11 90.1 4.6 159 126-289 86-246 (285)
98 KOG0122 Translation initiation 98.2 5.5E-07 1.2E-11 86.3 2.8 65 229-293 189-254 (270)
99 KOG4660 Protein Mei2, essentia 98.2 1.2E-06 2.6E-11 92.9 5.4 72 125-201 72-143 (549)
100 PLN03134 glycine-rich RNA-bind 98.2 7.5E-07 1.6E-11 81.5 3.2 62 232-293 37-99 (144)
101 KOG4661 Hsp27-ERE-TATA-binding 98.2 3E-05 6.4E-10 82.1 14.6 62 232-293 408-470 (940)
102 KOG0149 Predicted RNA-binding 98.2 3.4E-07 7.5E-12 87.3 -0.0 74 226-300 10-84 (247)
103 KOG1924 RhoA GTPase effector D 98.1 8.6E-06 1.9E-10 89.1 9.4 8 127-134 640-647 (1102)
104 PF04059 RRM_2: RNA recognitio 98.1 2.6E-05 5.5E-10 65.9 9.5 78 129-206 2-85 (97)
105 PF00076 RRM_1: RNA recognitio 98.0 1.2E-06 2.5E-11 69.0 0.1 62 232-293 1-62 (70)
106 KOG1924 RhoA GTPase effector D 98.0 2.6E-05 5.6E-10 85.5 10.3 13 35-47 525-537 (1102)
107 KOG4307 RNA binding protein RB 98.0 4.8E-05 1E-09 82.4 11.3 159 127-287 310-493 (944)
108 PF11608 Limkain-b1: Limkain b 97.9 2.8E-05 6E-10 62.8 6.6 70 129-208 3-77 (90)
109 KOG1365 RNA-binding protein Fu 97.9 1.4E-05 3E-10 81.1 4.8 163 128-293 161-347 (508)
110 KOG1995 Conserved Zn-finger pr 97.9 1.3E-05 2.7E-10 81.3 4.4 83 125-207 63-153 (351)
111 KOG1457 RNA binding protein (c 97.8 1.4E-05 3.1E-10 75.6 4.2 66 126-195 208-273 (284)
112 KOG0113 U1 small nuclear ribon 97.7 1.7E-05 3.7E-10 78.2 1.7 66 229-294 101-167 (335)
113 PF14259 RRM_6: RNA recognitio 97.6 2.4E-05 5.3E-10 61.8 2.0 60 232-292 1-61 (70)
114 KOG4849 mRNA cleavage factor I 97.6 5.9E-05 1.3E-09 75.6 5.0 78 126-203 78-157 (498)
115 KOG4210 Nuclear localization s 97.6 3.3E-05 7.1E-10 78.5 2.7 81 127-208 183-264 (285)
116 KOG0125 Ataxin 2-binding prote 97.5 2.7E-05 5.9E-10 77.7 0.9 64 232-297 99-163 (376)
117 KOG4208 Nucleolar RNA-binding 97.5 9.1E-05 2E-09 69.7 4.3 65 231-295 51-117 (214)
118 KOG2314 Translation initiation 97.5 0.00034 7.3E-09 74.5 8.6 78 126-204 56-140 (698)
119 KOG4307 RNA binding protein RB 97.5 0.0015 3.4E-08 71.1 13.5 77 128-204 867-943 (944)
120 KOG0126 Predicted RNA-binding 97.5 1.2E-05 2.5E-10 74.0 -2.4 62 232-293 38-100 (219)
121 KOG4206 Spliceosomal protein s 97.4 0.00066 1.4E-08 65.0 9.1 78 124-206 142-220 (221)
122 PLN03120 nucleic acid binding 97.4 7.3E-05 1.6E-09 73.9 2.3 60 231-293 6-65 (260)
123 KOG3152 TBP-binding protein, a 97.4 0.00012 2.5E-09 71.1 3.0 73 127-199 73-157 (278)
124 KOG0112 Large RNA-binding prot 97.4 5.7E-05 1.2E-09 84.3 0.9 142 126-293 370-514 (975)
125 KOG0108 mRNA cleavage and poly 97.3 0.00014 3.1E-09 77.5 3.5 62 230-293 19-83 (435)
126 PLN03213 repressor of silencin 97.3 9.6E-05 2.1E-09 77.3 2.0 59 232-293 13-73 (759)
127 KOG0121 Nuclear cap-binding pr 97.3 0.00013 2.8E-09 63.6 2.2 67 229-295 36-103 (153)
128 KOG0107 Alternative splicing f 97.2 0.0001 2.2E-09 67.6 1.0 53 232-294 13-71 (195)
129 KOG0106 Alternative splicing f 97.2 0.00022 4.7E-09 68.8 3.2 70 125-202 96-165 (216)
130 KOG4207 Predicted splicing fac 97.2 0.00012 2.6E-09 68.8 1.3 66 232-297 16-82 (256)
131 PF08777 RRM_3: RNA binding mo 97.2 0.00067 1.5E-08 58.5 5.3 71 129-205 2-77 (105)
132 KOG0111 Cyclophilin-type pepti 97.2 0.0002 4.3E-09 67.8 2.1 65 229-293 10-75 (298)
133 KOG0130 RNA-binding protein RB 97.2 0.00022 4.7E-09 62.6 2.1 65 230-294 73-138 (170)
134 COG5175 MOT2 Transcriptional r 97.1 0.0011 2.3E-08 66.6 6.9 80 128-207 114-202 (480)
135 KOG0129 Predicted RNA-binding 97.1 0.001 2.2E-08 70.7 6.9 64 126-189 368-432 (520)
136 KOG0415 Predicted peptidyl pro 97.1 0.0004 8.6E-09 70.1 3.7 66 225-295 235-306 (479)
137 KOG0114 Predicted RNA-binding 97.1 0.00039 8.5E-09 58.3 2.9 64 227-295 16-82 (124)
138 smart00360 RRM RNA recognition 97.1 0.00044 9.6E-09 53.3 2.9 59 234-292 1-60 (71)
139 PLN03121 nucleic acid binding 97.0 0.00029 6.2E-09 68.7 2.1 67 231-299 7-73 (243)
140 smart00362 RRM_2 RNA recogniti 97.0 0.00046 1E-08 53.4 2.7 59 232-292 2-61 (72)
141 COG0724 RNA-binding proteins ( 97.0 0.00041 8.9E-09 68.8 3.0 63 230-292 116-179 (306)
142 KOG1365 RNA-binding protein Fu 97.0 0.0041 8.9E-08 63.6 9.7 168 128-297 60-233 (508)
143 KOG1456 Heterogeneous nuclear 97.0 0.004 8.6E-08 63.5 9.5 143 127-293 30-182 (494)
144 KOG1855 Predicted RNA-binding 97.0 0.00069 1.5E-08 70.1 4.3 80 116-195 219-311 (484)
145 KOG1029 Endocytic adaptor prot 96.9 0.027 5.9E-07 62.5 15.6 20 285-304 253-272 (1118)
146 smart00361 RRM_1 RNA recogniti 96.9 0.0011 2.5E-08 52.5 3.7 27 267-293 34-60 (70)
147 KOG4849 mRNA cleavage factor I 96.7 0.033 7.2E-07 56.4 13.6 30 131-160 348-377 (498)
148 PF08952 DUF1866: Domain of un 96.7 0.0072 1.6E-07 54.6 8.1 70 127-205 26-104 (146)
149 KOG4211 Splicing factor hnRNP- 96.6 0.005 1.1E-07 65.1 7.2 77 127-205 102-179 (510)
150 KOG2193 IGF-II mRNA-binding pr 96.6 0.0011 2.4E-08 68.3 2.2 142 129-297 2-146 (584)
151 KOG1190 Polypyrimidine tract-b 96.5 0.0048 1E-07 63.7 6.5 78 126-207 412-490 (492)
152 KOG1548 Transcription elongati 96.5 0.0073 1.6E-07 61.2 7.2 79 126-208 263-352 (382)
153 PF05172 Nup35_RRM: Nup53/35/4 96.4 0.02 4.3E-07 48.8 8.4 78 128-207 6-91 (100)
154 cd00590 RRM RRM (RNA recogniti 96.4 0.0023 5E-08 49.7 2.4 62 232-294 2-64 (74)
155 KOG2416 Acinus (induces apopto 96.3 0.0033 7.2E-08 67.6 4.1 64 225-293 440-504 (718)
156 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.0084 1.8E-07 44.9 5.1 52 129-187 2-53 (53)
157 KOG0105 Alternative splicing f 96.3 0.02 4.2E-07 53.3 8.4 70 126-202 113-184 (241)
158 KOG0128 RNA-binding protein SA 96.2 0.0017 3.7E-08 72.6 1.2 79 128-207 736-814 (881)
159 KOG1996 mRNA splicing factor [ 95.5 0.04 8.7E-07 54.7 7.0 63 144-206 302-365 (378)
160 KOG1923 Rac1 GTPase effector F 95.4 0.057 1.2E-06 60.2 8.6 23 129-151 386-412 (830)
161 KOG0112 Large RNA-binding prot 95.3 0.04 8.7E-07 62.3 7.1 79 124-208 451-531 (975)
162 KOG0115 RNA-binding protein p5 94.6 0.038 8.3E-07 54.0 4.1 61 129-190 32-92 (275)
163 KOG4574 RNA-binding protein (c 94.3 0.16 3.5E-06 57.2 8.6 75 129-209 299-375 (1007)
164 KOG2202 U2 snRNP splicing fact 94.1 0.028 6.1E-07 55.0 2.0 63 144-207 84-147 (260)
165 KOG2068 MOT2 transcription fac 94.1 0.019 4.2E-07 58.3 0.9 79 128-207 77-162 (327)
166 KOG4209 Splicing factor RNPS1, 93.9 0.04 8.7E-07 54.3 2.9 62 231-293 103-165 (231)
167 PF15023 DUF4523: Protein of u 93.7 0.35 7.6E-06 43.4 7.9 74 125-206 83-160 (166)
168 PF08675 RNA_bind: RNA binding 93.4 0.25 5.4E-06 40.3 6.0 55 129-192 10-64 (87)
169 KOG2891 Surface glycoprotein [ 92.9 11 0.00024 37.6 19.6 36 127-162 148-195 (445)
170 PF13893 RRM_5: RNA recognitio 92.9 0.12 2.7E-06 38.6 3.4 24 270-293 21-44 (56)
171 KOG1923 Rac1 GTPase effector F 92.8 0.55 1.2E-05 52.7 9.5 8 148-155 402-409 (830)
172 KOG0533 RRM motif-containing p 92.5 0.074 1.6E-06 52.6 2.2 63 232-295 86-149 (243)
173 KOG4246 Predicted DNA-binding 91.9 0.71 1.5E-05 52.1 9.0 12 126-137 143-154 (1194)
174 KOG4285 Mitotic phosphoprotein 91.8 1.9 4.1E-05 43.4 11.0 59 134-200 203-261 (350)
175 KOG0151 Predicted splicing reg 91.8 0.1 2.2E-06 57.7 2.4 67 227-296 173-245 (877)
176 PF10309 DUF2414: Protein of u 91.7 0.87 1.9E-05 35.2 6.7 55 128-190 5-62 (62)
177 KOG0116 RasGAP SH3 binding pro 91.4 0.097 2.1E-06 55.9 1.8 59 232-290 291-350 (419)
178 PF07576 BRAP2: BRCA1-associat 91.1 2 4.3E-05 37.3 9.2 67 128-196 13-80 (110)
179 PF04847 Calcipressin: Calcipr 90.9 0.58 1.3E-05 44.5 6.3 61 141-207 8-70 (184)
180 PF03467 Smg4_UPF3: Smg-4/UPF3 90.6 0.35 7.5E-06 45.8 4.5 70 127-196 6-81 (176)
181 KOG2135 Proteins containing th 89.8 0.19 4.1E-06 53.3 2.1 74 127-207 371-445 (526)
182 KOG2591 c-Mpl binding protein, 89.5 3.5 7.6E-05 44.8 11.2 69 127-202 174-246 (684)
183 PF03880 DbpA: DbpA RNA bindin 89.2 1.8 3.9E-05 34.6 7.0 67 130-205 2-74 (74)
184 PF04059 RRM_2: RNA recognitio 89.1 0.35 7.6E-06 41.0 2.9 61 233-293 5-68 (97)
185 KOG4660 Protein Mei2, essentia 88.7 0.66 1.4E-05 50.3 5.2 68 129-196 389-457 (549)
186 KOG4672 Uncharacterized conser 87.6 3.4 7.3E-05 43.3 9.3 8 285-292 478-485 (487)
187 KOG4454 RNA binding protein (R 87.5 0.23 4.9E-06 47.6 0.8 61 232-294 12-73 (267)
188 KOG0153 Predicted RNA-binding 87.3 0.45 9.7E-06 48.7 2.8 53 229-292 228-286 (377)
189 KOG0804 Cytoplasmic Zn-finger 87.3 2 4.3E-05 45.6 7.6 67 127-196 73-141 (493)
190 KOG2253 U1 snRNP complex, subu 86.8 10 0.00022 42.3 13.0 14 478-491 352-365 (668)
191 COG5178 PRP8 U5 snRNP spliceos 83.9 0.9 2E-05 53.0 3.4 37 127-163 71-107 (2365)
192 PF11600 CAF-1_p150: Chromatin 83.6 46 0.001 32.5 16.4 11 501-511 162-172 (216)
193 KOG2888 Putative RNA binding p 82.8 0.87 1.9E-05 46.2 2.4 8 144-151 85-92 (453)
194 KOG2318 Uncharacterized conser 81.9 5.7 0.00012 43.5 8.3 80 125-204 171-304 (650)
195 KOG0115 RNA-binding protein p5 79.3 2.1 4.5E-05 42.3 3.6 83 182-291 6-93 (275)
196 PHA03378 EBNA-3B; Provisional 78.6 17 0.00036 40.8 10.5 11 140-150 820-830 (991)
197 KOG2193 IGF-II mRNA-binding pr 78.5 1.7 3.7E-05 45.6 3.0 55 232-298 4-65 (584)
198 KOG3671 Actin regulatory prote 76.4 31 0.00068 37.4 11.5 21 130-150 483-503 (569)
199 PF11767 SET_assoc: Histone ly 76.1 12 0.00026 29.3 6.4 55 139-202 11-65 (66)
200 KOG1925 Rac1 GTPase effector F 75.7 7.3 0.00016 42.0 6.7 27 125-151 303-329 (817)
201 KOG2891 Surface glycoprotein [ 75.4 94 0.002 31.2 15.2 24 172-195 77-104 (445)
202 PF03276 Gag_spuma: Spumavirus 73.1 7 0.00015 42.6 5.9 34 154-188 303-338 (582)
203 KOG1995 Conserved Zn-finger pr 70.1 3.7 8.1E-05 42.4 3.0 61 232-292 69-138 (351)
204 KOG4592 Uncharacterized conser 69.6 13 0.00028 41.2 7.0 10 282-291 431-440 (728)
205 KOG4246 Predicted DNA-binding 66.0 2.4 5.2E-05 48.0 0.7 8 169-176 157-164 (1194)
206 KOG0391 SNF2 family DNA-depend 65.6 39 0.00085 40.7 10.1 7 18-24 1838-1844(1958)
207 PHA03378 EBNA-3B; Provisional 65.4 37 0.00081 38.2 9.4 9 7-15 667-675 (991)
208 KOG1985 Vesicle coat complex C 64.8 93 0.002 36.1 12.6 25 182-206 220-247 (887)
209 KOG4410 5-formyltetrahydrofola 63.9 44 0.00095 33.6 8.8 49 127-181 329-378 (396)
210 KOG2591 c-Mpl binding protein, 63.5 10 0.00023 41.4 4.8 93 180-297 147-239 (684)
211 KOG2375 Protein interacting wi 61.7 32 0.00069 39.5 8.4 25 5-29 543-568 (756)
212 KOG4019 Calcineurin-mediated s 60.8 6.8 0.00015 36.8 2.5 75 127-207 9-89 (193)
213 KOG3671 Actin regulatory prote 57.4 57 0.0012 35.5 8.9 6 154-159 480-485 (569)
214 PF08777 RRM_3: RNA binding mo 55.2 8.2 0.00018 33.2 2.0 54 232-293 4-60 (105)
215 KOG1855 Predicted RNA-binding 54.4 9 0.00019 40.6 2.4 65 229-293 231-309 (484)
216 KOG0162 Myosin class I heavy c 54.1 80 0.0017 36.1 9.6 8 151-158 1071-1078(1106)
217 KOG1984 Vesicle coat complex C 54.0 72 0.0016 37.2 9.5 12 196-207 357-368 (1007)
218 smart00596 PRE_C2HC PRE_C2HC d 53.0 18 0.00038 28.6 3.2 59 143-204 2-61 (69)
219 KOG2295 C2H2 Zn-finger protein 52.1 2.4 5.2E-05 46.0 -2.2 69 128-196 231-299 (648)
220 KOG2314 Translation initiation 51.4 12 0.00026 41.0 2.8 30 264-293 99-128 (698)
221 PRK11901 hypothetical protein; 51.1 1.5E+02 0.0032 30.8 10.4 62 126-192 243-306 (327)
222 KOG3152 TBP-binding protein, a 49.5 3.8 8.2E-05 40.5 -1.1 66 228-293 73-151 (278)
223 KOG2675 Adenylate cyclase-asso 47.4 23 0.00049 37.8 4.0 7 175-181 385-391 (480)
224 PF10567 Nab6_mRNP_bdg: RNA-re 47.0 36 0.00078 34.5 5.2 79 127-205 14-105 (309)
225 KOG0163 Myosin class VI heavy 45.4 4.5E+02 0.0098 30.5 13.6 9 275-283 587-595 (1259)
226 KOG4368 Predicted RNA binding 45.2 71 0.0015 35.4 7.4 9 290-298 556-564 (757)
227 KOG0307 Vesicle coat complex C 42.5 2.2E+02 0.0047 34.2 11.2 10 144-153 954-963 (1049)
228 PF11608 Limkain-b1: Limkain b 42.3 31 0.00067 28.5 3.2 52 232-293 5-62 (90)
229 KOG1546 Metacaspase involved i 41.7 2.6E+02 0.0056 29.1 10.3 71 128-205 64-146 (362)
230 PF09707 Cas_Cas2CT1978: CRISP 41.5 46 0.00099 27.6 4.2 49 127-178 24-72 (86)
231 KOG0670 U4/U6-associated splic 40.7 9 0.0002 42.0 -0.0 25 482-506 270-294 (752)
232 PF03468 XS: XS domain; Inter 40.6 55 0.0012 28.7 4.9 46 140-188 29-75 (116)
233 KOG1985 Vesicle coat complex C 40.1 1.6E+02 0.0034 34.3 9.4 8 173-180 230-237 (887)
234 PF07462 MSP1_C: Merozoite sur 40.0 62 0.0013 35.6 6.0 17 171-187 372-388 (574)
235 PF07530 PRE_C2HC: Associated 39.6 45 0.00098 26.2 3.8 60 143-205 2-62 (68)
236 KOG4483 Uncharacterized conser 38.9 56 0.0012 34.5 5.3 55 128-189 391-446 (528)
237 KOG0334 RNA helicase [RNA proc 36.9 37 0.00081 40.2 4.1 32 482-513 141-172 (997)
238 PRK14950 DNA polymerase III su 36.0 1.3E+02 0.0028 34.1 8.3 13 193-205 496-508 (585)
239 KOG2888 Putative RNA binding p 34.9 14 0.0003 37.8 0.3 8 171-178 161-168 (453)
240 PRK14950 DNA polymerase III su 34.1 1.5E+02 0.0033 33.5 8.5 9 196-204 533-541 (585)
241 KOG4008 rRNA processing protei 32.2 29 0.00062 34.1 1.9 36 125-160 37-72 (261)
242 KOG0835 Cyclin L [General func 31.7 52 0.0011 33.9 3.7 15 173-187 176-190 (367)
243 PF07462 MSP1_C: Merozoite sur 29.9 1.9E+02 0.0041 32.0 7.7 17 279-295 467-483 (574)
244 PRK11558 putative ssRNA endonu 29.8 83 0.0018 26.6 4.0 50 127-179 26-75 (97)
245 PF15513 DUF4651: Domain of un 29.6 99 0.0022 23.9 4.0 19 143-161 9-27 (62)
246 PRK00247 putative inner membra 29.3 6.3E+02 0.014 27.5 11.5 8 142-149 146-153 (429)
247 KOG4840 Predicted hydrolases o 28.4 1.1E+02 0.0023 30.3 4.9 80 127-210 36-120 (299)
248 KOG0796 Spliceosome subunit [R 26.8 19 0.0004 37.0 -0.4 17 279-295 146-162 (319)
249 KOG2072 Translation initiation 24.4 3.8E+02 0.0082 31.4 9.0 7 130-136 423-429 (988)
250 KOG4365 Uncharacterized conser 24.3 13 0.00028 39.5 -2.1 78 129-207 4-81 (572)
251 PRK12270 kgd alpha-ketoglutara 24.1 3.5E+02 0.0076 32.7 8.9 15 281-295 335-349 (1228)
252 KOG3600 Thyroid hormone recept 22.4 3.8E+02 0.0083 32.9 8.7 26 121-150 1117-1142(2238)
253 KOG3702 Nuclear polyadenylated 22.4 1.4E+02 0.0031 33.7 5.2 74 128-202 511-584 (681)
254 KOG1295 Nonsense-mediated deca 22.0 94 0.002 32.8 3.6 68 128-195 7-77 (376)
255 TIGR01873 cas_CT1978 CRISPR-as 21.6 1.4E+02 0.003 24.8 3.8 49 128-179 25-74 (87)
256 KOG1766 Enhancer of rudimentar 21.4 1.4E+02 0.0031 25.0 3.8 32 276-307 18-49 (104)
257 COG5180 PBP1 Protein interacti 20.5 3.5E+02 0.0076 29.4 7.4 14 10-23 481-494 (654)
258 KOG0156 Cytochrome P450 CYP2 s 20.3 1.5E+02 0.0032 32.9 4.9 59 132-200 36-97 (489)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=1.5e-24 Score=225.16 Aligned_cols=156 Identities=16% Similarity=0.247 Sum_probs=131.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+++|+++|+++|..||.|++|+|+.++.|++++|||||+|.+.++|..||..|||..|.++.|.|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
+..... ....++ +||+||+..+++++|++++. ...+.......+..+|+++|||||+|.+.++|
T Consensus 184 a~p~~~--------------~~~~~~-lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 184 ARPGGE--------------SIKDTN-LYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred cccccc--------------ccccce-eEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 754211 011223 59999999999999999944 22222111123367899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008385 284 QEALEKLTCMVE 295 (567)
Q Consensus 284 ~kAle~ln~~i~ 295 (567)
.+||+.||+.+.
T Consensus 249 ~~Ai~~lng~~~ 260 (346)
T TIGR01659 249 QEAISALNNVIP 260 (346)
T ss_pred HHHHHHhCCCcc
Confidence 999999998754
No 2
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=99.92 E-value=2.6e-24 Score=227.82 Aligned_cols=339 Identities=30% Similarity=0.431 Sum_probs=195.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
++..++|||||...+....++.++..||.|.+|+.+. |||+.|..+..+..|+..|+-..++|..+.++..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3577999999999999999999999999999998754 9999999999999999999999999999998876
Q ss_pred hhhHHHHHhhhhhhhhccccccc---cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 206 QATREYLERYVDKKTENTKKLKE---TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~---~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
......-..+............+ ....+|+|++............. ..+-+| ....
T Consensus 109 ~q~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~-----------------is~s~~----s~~~ 167 (668)
T KOG2253|consen 109 EQTIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ-----------------ISSSAA----SRRQ 167 (668)
T ss_pred hhhhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh-----------------ccchhh----hhhh
Confidence 33322111111111110111111 11235555554444333322100 000011 0111
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCccccccCCCCCccccccccccccccccccccccccCcCCCCC
Q 008385 283 DQEALEKLTCMVEERLKTNPLPPPPPQTTADGSGISNSELPAKARDGDSDVDMIRNDIAEDKLDDETTSDTKASDHDRPE 362 (567)
Q Consensus 283 a~kAle~ln~~i~e~~~~~~~~pp~~~~~~~~~~~~~~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 362 (567)
...|...+..++......++..++.+.+..+ ..+..-.+....+..+ +.. . ++. .+..
T Consensus 168 ~~e~d~h~~e~~~~~~~s~~~~~~~~~~~~~-----~~e~~~~s~~~~s~td-----s~~-~------~d~--~~~~--- 225 (668)
T KOG2253|consen 168 IAEADDHCLELEKTETESNSALSKEAESKKS-----PFEDTKDSKRSFSSTD-----SGS-E------SDS--AEVN--- 225 (668)
T ss_pred hHHHHHHHHHHHHhhcccccccCcccccccC-----chhhhchhhhhhcccC-----ccc-c------chh--hhhc---
Confidence 1222222323333222222222111111000 0000000000000000 000 0 000 0000
Q ss_pred CCCCCcccccc-cCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 008385 363 TSSPDRSRVHD-RRGRDKERDLKREKEREIDRYEREAERERVRKEREQRRKIEEAEREYERCLKDWEYREREREKERQYE 441 (567)
Q Consensus 363 ~~~~~r~r~~~-rr~r~r~r~~~r~r~r~~~~~~r~rerer~r~~~~~~~r~~~~er~~~~r~r~~~~rer~~~~~r~~e 441 (567)
+.++. .+++.+.+.+.|...|.+.+.+...+.+..++++.......++|.+|+.|++.|+.|++.++++++++
T Consensus 226 ------s~~~n~~rd~sr~~~r~R~~~r~Re~~e~~ed~~~~re~r~~~~~~~~~E~Ayq~rl~~we~Rer~~~Ke~eke 299 (668)
T KOG2253|consen 226 ------SSSLNYCRDRSRFDRRSRNDRRIRERLEKNEDSDEYREDRAATIKSVDPEKAYQTRLVFWEIREQTKEKEREKE 299 (668)
T ss_pred ------ccccccchhhccchhhhHHHHHHHHHhhhccchHHHHHhhhhhhhccChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111 01111111122222222222222223355666777778888999999999999999999987766666
Q ss_pred HHHHHHHHH------HHhHHhhhhcccchhhhHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008385 442 KEKEKERER------KRKKEILYDEEEDEDDSRKRWRRSVLEEKRRKRIREKEEDLADEVREEEEIAVAKRRAEEEQLQQ 515 (567)
Q Consensus 442 ~ererer~r------~r~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~re~e~~~~~r~re~~e~~~~~~~~~~~~~~~ 515 (567)
+++++++++ .+++++++|||+++++ .+||+++++..|+++++++.|+|.+||.+++++++++|++..++..++
T Consensus 300 ~~ke~~r~~~~~ke~kr~k~~~ed~DD~rdd-~~y~r~s~l~~r~r~~~re~Ead~~dR~qeqee~~E~Kr~~~~~~~~~ 378 (668)
T KOG2253|consen 300 RLKEKSRQYKREKEAKRLKEFLEDYDDERDD-PKYYRGSALQERLRDREREAEADRRDRHQEQEELEEIKRRHSEEEAED 378 (668)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcchhhhh-HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhcccc
Confidence 665554443 6777888899999977 599999999999999999999999999999999999999998877766
Q ss_pred HHHHHHHh
Q 008385 516 QQRDALKL 523 (567)
Q Consensus 516 ~~~~~~~~ 523 (567)
......+.
T Consensus 379 ~~~e~~r~ 386 (668)
T KOG2253|consen 379 PSAEEERN 386 (668)
T ss_pred cchHHHHH
Confidence 66444433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=8.9e-23 Score=222.54 Aligned_cols=164 Identities=17% Similarity=0.242 Sum_probs=128.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++||||||++.+++++|+.+|..||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008385 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~ 284 (567)
........ ... ...........+||+||+..+++++|++++..++ +.......+..+|+++|||||+|.+.++|.
T Consensus 185 ~~~p~a~~-~~~---~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQAQP-IID---MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred cccccccc-ccc---cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 43211000 000 0000111122369999999999999998844111 111111123567899999999999999999
Q ss_pred HHHHHHHHH
Q 008385 285 EALEKLTCM 293 (567)
Q Consensus 285 kAle~ln~~ 293 (567)
+||..||++
T Consensus 261 kAI~amNg~ 269 (612)
T TIGR01645 261 EAIASMNLF 269 (612)
T ss_pred HHHHHhCCC
Confidence 999999987
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=1.8e-22 Score=212.07 Aligned_cols=154 Identities=14% Similarity=0.222 Sum_probs=128.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|+.||.|.+|+|+.++.+|+++|||||+|.+.++|..||..|||..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
..... .. ...+||+||+..+++++|..++. ...+.......+..+|.++|||||+|.+.++|..
T Consensus 82 ~~~~~--------------~~-~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSDS--------------IK-GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred ccccc--------------cc-cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 53211 11 12359999999999999998844 2112111111235578999999999999999999
Q ss_pred HHHHHHHHHH
Q 008385 286 ALEKLTCMVE 295 (567)
Q Consensus 286 Ale~ln~~i~ 295 (567)
||..||+...
T Consensus 147 ai~~l~g~~~ 156 (352)
T TIGR01661 147 AIKTLNGTTP 156 (352)
T ss_pred HHHHhCCCcc
Confidence 9999998643
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.85 E-value=4.5e-21 Score=208.68 Aligned_cols=166 Identities=18% Similarity=0.241 Sum_probs=131.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
.....++|||+|||..+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||. |+|..|.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 35567899999999999999999999999999999999999999999999999999999999997 89999999999998
Q ss_pred EchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 204 VDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 204 ~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
++.............. .........+||+||+..+++++|.+++..+ .+.......+..+|+++|||||+|.+.++
T Consensus 164 ~~~~~~~~~~~~~~~~---~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQ---PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred ecchhhhhhhhccccc---CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 8765433221111000 0001113447999999999999999984411 12111112335678999999999999999
Q ss_pred HHHHHHHHHHH
Q 008385 283 DQEALEKLTCM 293 (567)
Q Consensus 283 a~kAle~ln~~ 293 (567)
|..|+..||++
T Consensus 241 A~~A~~~l~g~ 251 (457)
T TIGR01622 241 AKEALEVMNGF 251 (457)
T ss_pred HHHHHHhcCCc
Confidence 99999999984
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=4.1e-21 Score=214.23 Aligned_cols=146 Identities=19% Similarity=0.293 Sum_probs=125.5
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhH
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATR 209 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~ 209 (567)
+|||||||+++|+++|.++|+.||.|.+|+|+++..|++++|||||+|.+.++|.+||..||+..|.|+.|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998875321
Q ss_pred HHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 210 EYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 210 ~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
.. ......+ +||+||+.++++++|.+++. ++.+.. +.+|+++|||||.|.+.++|
T Consensus 82 ~~------------~~~~~~~-vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~------~~~g~skg~afV~F~~~e~A 142 (562)
T TIGR01628 82 SL------------RRSGVGN-IFVKNLDKSVDNKALFDTFSKFGNILSCKVAT------DENGKSRGYGFVHFEKEESA 142 (562)
T ss_pred cc------------cccCCCc-eEEcCCCccCCHHHHHHHHHhcCCcceeEeee------cCCCCcccEEEEEECCHHHH
Confidence 10 1111223 59999999999999999844 222332 46789999999999999999
Q ss_pred HHHHHHHHHHH
Q 008385 284 QEALEKLTCMV 294 (567)
Q Consensus 284 ~kAle~ln~~i 294 (567)
..||+.||++.
T Consensus 143 ~~Ai~~lng~~ 153 (562)
T TIGR01628 143 KAAIQKVNGML 153 (562)
T ss_pred HHHHHHhcccE
Confidence 99999999874
No 7
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=4.3e-21 Score=183.37 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=126.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.....||||.|...++-+.|++.|.+||.|..++|++|..|++++|||||.|-+.++|++||..|||+-|++|.|+.+|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHhhhhhhhhc---ccccccccc-ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCH
Q 008385 206 QATREYLERYVDKKTEN---TKKLKETQD-AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDR 280 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~---~~~~~~~~~-~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~ 280 (567)
..+.. ....+...- -.....+|+ +|||||...++++.++.++...+ +.. -..-+-+||+||.|+++
T Consensus 140 TRKp~---e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~E------VRvFk~qGYaFVrF~tk 210 (321)
T KOG0148|consen 140 TRKPS---EMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQE------VRVFKDQGYAFVRFETK 210 (321)
T ss_pred ccCcc---ccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceE------EEEecccceEEEEecch
Confidence 65531 111111100 001222222 69999999999999999844222 221 12235589999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 281 KADQEALEKLTCM 293 (567)
Q Consensus 281 e~a~kAle~ln~~ 293 (567)
|+|..||..||+.
T Consensus 211 EaAahAIv~mNnt 223 (321)
T KOG0148|consen 211 EAAAHAIVQMNNT 223 (321)
T ss_pred hhHHHHHHHhcCc
Confidence 9999999999985
No 8
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.1e-20 Score=186.62 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=132.1
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eC--CeE
Q 008385 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-ID--GQE 199 (567)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~-i~--gr~ 199 (567)
..+...-.||||-||..++|.+|+.+|.+||.|.+|.|++|+.||.++|||||.|.+.++|..|+..||... |- ...
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~p 108 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHP 108 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcc
Confidence 335567899999999999999999999999999999999999999999999999999999999999998865 43 467
Q ss_pred EEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCC
Q 008385 200 LMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEED 279 (567)
Q Consensus 200 l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~ 279 (567)
|.|++++..+..+ .....+||+-|+..+++.++++++...+.++|.....+..|.++|||||+|.+
T Consensus 109 vqvk~Ad~E~er~--------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fst 174 (510)
T KOG0144|consen 109 VQVKYADGERERI--------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFST 174 (510)
T ss_pred eeecccchhhhcc--------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEeh
Confidence 8888888764433 11112599999999999999999442222222222337889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008385 280 RKADQEALEKLTCMVEERL 298 (567)
Q Consensus 280 ~e~a~kAle~ln~~i~e~~ 298 (567)
++.|..||+.||+.-....
T Consensus 175 ke~A~~Aika~ng~~tmeG 193 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEG 193 (510)
T ss_pred HHHHHHHHHhhccceeecc
Confidence 9999999999999755443
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=8.1e-20 Score=173.40 Aligned_cols=154 Identities=14% Similarity=0.224 Sum_probs=132.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|.|.-||.++|.++|+.||...|.|.+|++++|+.+|.+.|||||.|.++.+|++||..|||..|..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
+.+....+ +..+ +||..||.+++..+|+.++. ...+..-....+..+|.++|.|||.|+.+.+|
T Consensus 118 ARPSs~~I--------------k~aN-LYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 ARPSSDSI--------------KDAN-LYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred ccCChhhh--------------cccc-eEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 98864433 2233 49999999999999998833 22222222223478899999999999999999
Q ss_pred HHHHHHHHHH
Q 008385 284 QEALEKLTCM 293 (567)
Q Consensus 284 ~kAle~ln~~ 293 (567)
+.||..||+.
T Consensus 183 e~AIk~lNG~ 192 (360)
T KOG0145|consen 183 EEAIKGLNGQ 192 (360)
T ss_pred HHHHHhccCC
Confidence 9999999984
No 10
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=7.2e-20 Score=185.73 Aligned_cols=143 Identities=22% Similarity=0.286 Sum_probs=121.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-CCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-DGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i-~gr~l~V~~ 204 (567)
...+-||||.||.++.+++|.-||.+.|.|-.++|+.|+.+|.++|||||+|.+.+.|..||..||+++| .|+.|.|.+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999 599999987
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CC---CCcccccCCCCCCCCCCCCceEEEEeCCH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TK---SPENLKDNETGNKESHDPTNFGVVTEEDR 280 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~ 280 (567)
+... +-+||||||...++++|.+- .+ .++.+... .......+++|||||+|.++
T Consensus 161 Svan---------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy-~~p~dk~KNRGFaFveYe~H 218 (506)
T KOG0117|consen 161 SVAN---------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVY-PSPDDKTKNRGFAFVEYESH 218 (506)
T ss_pred eeec---------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEe-cCccccccccceEEEEeecc
Confidence 7552 23699999999998887655 44 22211111 12345789999999999999
Q ss_pred HHHHHHHHHH
Q 008385 281 KADQEALEKL 290 (567)
Q Consensus 281 e~a~kAle~l 290 (567)
..|..|..+|
T Consensus 219 ~~Aa~aRrKl 228 (506)
T KOG0117|consen 219 RAAAMARRKL 228 (506)
T ss_pred hhHHHHHhhc
Confidence 9999987665
No 11
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=7.5e-20 Score=192.26 Aligned_cols=167 Identities=13% Similarity=0.123 Sum_probs=125.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEEc
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKVD 205 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~a 205 (567)
.++|||+|||..+++++|+.+|..||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..+.| ..|.|.++
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 5689999999999999999999999999999999998899999999999999999999999999999987 56788876
Q ss_pred hhhHHH-----HH---hhhh---hh-------------------------------------------------hhc---
Q 008385 206 QATREY-----LE---RYVD---KK-------------------------------------------------TEN--- 222 (567)
Q Consensus 206 ~~~~~~-----~~---~~~~---~k-------------------------------------------------~~~--- 222 (567)
...... .. .+.. .. ...
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (352)
T TIGR01661 169 NNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPA 248 (352)
T ss_pred CCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCcc
Confidence 433200 00 0000 00 000
Q ss_pred ---------c-----ccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHH
Q 008385 223 ---------T-----KKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 287 (567)
Q Consensus 223 ---------~-----~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAl 287 (567)
. ........+||+||++.+++++|.+++. ...+.......+..+|.++|||||+|.+.++|..||
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai 328 (352)
T TIGR01661 249 TDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAI 328 (352)
T ss_pred ccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHH
Confidence 0 0001112379999999999999999943 111111111123568999999999999999999999
Q ss_pred HHHHHHH
Q 008385 288 EKLTCMV 294 (567)
Q Consensus 288 e~ln~~i 294 (567)
..|||..
T Consensus 329 ~~lnG~~ 335 (352)
T TIGR01661 329 LSLNGYT 335 (352)
T ss_pred HHhCCCE
Confidence 9999853
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.82 E-value=9.9e-20 Score=198.55 Aligned_cols=144 Identities=21% Similarity=0.261 Sum_probs=118.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr~l~V~~a 205 (567)
..++|||+|||+++++++|..+|+.||.|.+|+|+.| .+|.++|||||+|.+.++|..||..||+..|. |+.|.|.++
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S 135 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS 135 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence 4689999999999999999999999999999999999 79999999999999999999999999999985 787777543
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CC-CCcccc-cCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TK-SPENLK-DNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~k-s~~~~k-~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
.. ...+||+||+..+++++|.++ .+ ...+.. .........++++|||||+|.++++
T Consensus 136 ~~---------------------~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~ed 194 (578)
T TIGR01648 136 VD---------------------NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRA 194 (578)
T ss_pred cc---------------------CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHH
Confidence 21 123699999999999998776 33 111111 1111224567899999999999999
Q ss_pred HHHHHHHHHH
Q 008385 283 DQEALEKLTC 292 (567)
Q Consensus 283 a~kAle~ln~ 292 (567)
|..|+..|+.
T Consensus 195 Aa~AirkL~~ 204 (578)
T TIGR01648 195 AAMARRKLMP 204 (578)
T ss_pred HHHHHHHhhc
Confidence 9999988753
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=4.3e-20 Score=167.35 Aligned_cols=155 Identities=15% Similarity=0.266 Sum_probs=127.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...|||||||+..+++..|.++|-++|+|+.+.+..++.+..++|||||+|.+.++|.-||+.||...|.|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999997654
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCC-CCCCCCCCCceEEEEeCCHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNET-GNKESHDPTNFGVVTEEDRKADQ 284 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~-~~~~~g~~kGfgFV~f~~~e~a~ 284 (567)
..... .....+ +||+||.+.+++..|-++ +....+...... .+..+|.++|||||.|.+.+++.
T Consensus 88 ~~~~n-------------l~vgan-lfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AHQKN-------------LDVGAN-LFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred ccccc-------------cccccc-ccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 21110 011123 599999999999988777 332222221111 22577999999999999999999
Q ss_pred HHHHHHHHHHH
Q 008385 285 EALEKLTCMVE 295 (567)
Q Consensus 285 kAle~ln~~i~ 295 (567)
.|++.||+.+.
T Consensus 154 ~ai~s~ngq~l 164 (203)
T KOG0131|consen 154 AAIGSMNGQYL 164 (203)
T ss_pred HHHHHhccchh
Confidence 99999999766
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.80 E-value=2.5e-19 Score=199.95 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=128.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~----gr~l~ 201 (567)
...++|||+||+..+|+++|+.+|+.||.|.++.|+.+. +|.++|||||.|.+.++|..|+..|||..|. |..|.
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 346789999999999999999999999999999999984 8999999999999999999999999999999 99999
Q ss_pred EEEchhhHHHHHhhhh----hhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEe
Q 008385 202 LKVDQATREYLERYVD----KKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTE 277 (567)
Q Consensus 202 V~~a~~~~~~~~~~~~----~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f 277 (567)
|.++............ ............+ +||+||+..+++++|++++..++.+.......+.+|.++|||||+|
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~-l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f 333 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVN-LYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCF 333 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCE-EEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEe
Confidence 9887655333111111 1111111222333 5999999999999999994422111111111146899999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 008385 278 EDRKADQEALEKLTCM 293 (567)
Q Consensus 278 ~~~e~a~kAle~ln~~ 293 (567)
.+.++|.+|+..||+.
T Consensus 334 ~~~~~A~~A~~~~~g~ 349 (562)
T TIGR01628 334 SNPEEANRAVTEMHGR 349 (562)
T ss_pred CCHHHHHHHHHHhcCC
Confidence 9999999999999974
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.80 E-value=3.4e-19 Score=196.56 Aligned_cols=166 Identities=16% Similarity=0.119 Sum_probs=115.6
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhhCC------------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 008385 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCG------------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (567)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G------------~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L 190 (567)
......++|||||||+.+|+++|..+|..|+ .|..+.+ +..+|||||+|.+.++|..||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 3355679999999999999999999999752 3333333 4567999999999999999995 9
Q ss_pred CCceeCCeEEEEEEchhhHHHH---Hhhh-hhh------h----hccccccccccccccCCCcccchhhhcCCCCCCc-c
Q 008385 191 NKFNIDGQELMLKVDQATREYL---ERYV-DKK------T----ENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-N 255 (567)
Q Consensus 191 ng~~i~gr~l~V~~a~~~~~~~---~~~~-~~k------~----~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~ 255 (567)
||+.|.|+.|.|.......... .... ... . ...........+||+||+..+++++|.+++..++ +
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 9999999999996432211000 0000 000 0 0000111223469999999999999998844221 1
Q ss_pred cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 256 LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 256 ~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
.......+..+|.++|||||+|.+.++|..||..||++.-
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 1111112356899999999999999999999999998643
No 16
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.78 E-value=3.1e-18 Score=187.07 Aligned_cols=165 Identities=16% Similarity=0.132 Sum_probs=121.7
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
..+.++|||+||++ .+|+++|+.+|+.||.|..|+|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999998863 6999999999999999999999999999999999
Q ss_pred EchhhHHHHH-------------hhhhhhhh-----ccc----cccccccccccCCCcccchhhhcCCCCCCcc--cccC
Q 008385 204 VDQATREYLE-------------RYVDKKTE-----NTK----KLKETQDAGAGKEDESVQSVEKNEPTKSPEN--LKDN 259 (567)
Q Consensus 204 ~a~~~~~~~~-------------~~~~~k~~-----~~~----~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~--~k~~ 259 (567)
++........ .+...... ... ...++..+||+||+.++++++|++++...+. ....
T Consensus 347 ~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 347 PSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred EcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 8754321110 01000000 000 0123455799999999999999999541111 1111
Q ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 260 ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 260 ~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
...... +..+|||||+|.+.++|..||..||+..-
T Consensus 427 k~~~~~-~~~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 427 KFFPKD-NERSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred EEecCC-CCcceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 011122 23589999999999999999999998643
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.77 E-value=2.9e-18 Score=189.19 Aligned_cols=167 Identities=15% Similarity=0.182 Sum_probs=121.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||||||+.+++++|+++|..||.|..+.|+.+..+|.++|||||+|.+.+.|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhhHHHHH--h---------hhhhhh--hccccccccccccccCCCccc----------chhhhcCC-CC-----CCccc
Q 008385 206 QATREYLE--R---------YVDKKT--ENTKKLKETQDAGAGKEDESV----------QSVEKNEP-TK-----SPENL 256 (567)
Q Consensus 206 ~~~~~~~~--~---------~~~~k~--~~~~~~~~~~~~~v~nl~~~~----------~e~~l~e~-~k-----s~~~~ 256 (567)
........ . ...... ........+.++++.|+.... ..++|+++ .+ .+.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 43211100 0 000000 000112345667888875321 11234333 22 33333
Q ss_pred ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 257 KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 257 k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+.. .+..++...||+||+|.+.++|.+||..|||..
T Consensus 453 ~~~--~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~ 488 (509)
T TIGR01642 453 RPN--GDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRK 488 (509)
T ss_pred ccC--cCCCcCCCcceEEEEECCHHHHHHHHHHcCCCE
Confidence 311 124557778999999999999999999999853
No 18
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.76 E-value=2.3e-16 Score=163.59 Aligned_cols=83 Identities=11% Similarity=0.249 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||++|+..+...+|+.||++||+|+..+||++..+...+|||||+|.+...|.+||..||.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999976
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+.+
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 544
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=7.9e-19 Score=173.53 Aligned_cols=155 Identities=17% Similarity=0.263 Sum_probs=128.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..|.||||.|++.+.++.|+..|..||+|+++.+..|+.|++++|||||+|+-++.|..|++.|||..++|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred hhH---HHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEe
Q 008385 207 ATR---EYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTE 277 (567)
Q Consensus 207 ~~~---~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f 277 (567)
+.. ..++...+. ...+.. +||..++++.++++|+..+. +|.+.++ ...+.++|||||+|
T Consensus 192 NmpQAQpiID~vqee------Ak~fnR-iYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~-----pt~~~HkGyGfiEy 259 (544)
T KOG0124|consen 192 NMPQAQPIIDMVQEE------AKKFNR-IYVASVHPDLSETDIKSVFEAFGEIVKCQLARA-----PTGRGHKGYGFIEY 259 (544)
T ss_pred CCcccchHHHHHHHH------HHhhhe-EEeeecCCCccHHHHHHHHHhhcceeeEEeecc-----CCCCCccceeeEEe
Confidence 321 122222211 122333 49999999999999876532 5555553 56688999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 008385 278 EDRKADQEALEKLTCM 293 (567)
Q Consensus 278 ~~~e~a~kAle~ln~~ 293 (567)
.+..+...||..||-+
T Consensus 260 ~n~qs~~eAiasMNlF 275 (544)
T KOG0124|consen 260 NNLQSQSEAIASMNLF 275 (544)
T ss_pred ccccchHHHhhhcchh
Confidence 9999999999998854
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.72 E-value=1.2e-17 Score=172.96 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=128.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
+.||||++||+.++.++|.++|+.+|+|..|.+++++.++.++|||||+|+-.+++.+||..+++..|+|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred hHHHHH------hhhhhhhhc-----cccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEE
Q 008385 208 TREYLE------RYVDKKTEN-----TKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVT 276 (567)
Q Consensus 208 ~~~~~~------~~~~~k~~~-----~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~ 276 (567)
....-. ....+.... .+.....--+.|.|||+.+...+|+.++..++.+.+........|+.-|||||.
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~ 164 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQ 164 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEE
Confidence 432210 000000000 001111222689999999999999888442221111222236778888999999
Q ss_pred eCCHHHHHHHHHHHHHH
Q 008385 277 EEDRKADQEALEKLTCM 293 (567)
Q Consensus 277 f~~~e~a~kAle~ln~~ 293 (567)
|.+..+|.+||+.+|+.
T Consensus 165 fk~~~dA~~Al~~~N~~ 181 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGN 181 (678)
T ss_pred EeeHHHHHHHHHhccCc
Confidence 99999999999999985
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.71 E-value=3.3e-17 Score=179.06 Aligned_cols=155 Identities=13% Similarity=0.030 Sum_probs=115.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L--ng~~i~gr~l~V~~ 204 (567)
++++|||+|||+.+++++|+++|+.||.|.+|.|+.+ +|||||+|.+.++|..||..| ++..|+|+.|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999864 589999999999999999864 78999999999999
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
+......... . .............+||+||+..++++.|.+++. ...+.+.... .. ...|||||+|.+.++|
T Consensus 75 s~~~~~~~~~--~-~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~--~~--~~~~~afVef~~~~~A 147 (481)
T TIGR01649 75 STSQEIKRDG--N-SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTF--TK--NNVFQALVEFESVNSA 147 (481)
T ss_pred cCCcccccCC--C-CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEE--ec--CCceEEEEEECCHHHH
Confidence 8653211000 0 000000011111259999999999999999944 2212221111 11 1247999999999999
Q ss_pred HHHHHHHHHHH
Q 008385 284 QEALEKLTCMV 294 (567)
Q Consensus 284 ~kAle~ln~~i 294 (567)
.+|++.||+..
T Consensus 148 ~~A~~~Lng~~ 158 (481)
T TIGR01649 148 QHAKAALNGAD 158 (481)
T ss_pred HHHHHHhcCCc
Confidence 99999999974
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=5.6e-17 Score=168.17 Aligned_cols=158 Identities=17% Similarity=0.230 Sum_probs=123.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+...|.|.|||+.|...+|+.+|+.||.|..|.|++.+ .|+.+|||||.|....+|..||..|||..|+|++|.|+|+-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 36789999999999999999999999999999999775 56666999999999999999999999999999999999986
Q ss_pred hhHHHHHhh-------h---------h-------------------hh---h----------------------------
Q 008385 207 ATREYLERY-------V---------D-------------------KK---T---------------------------- 220 (567)
Q Consensus 207 ~~~~~~~~~-------~---------~-------------------~k---~---------------------------- 220 (567)
....|-... . . .. .
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 644332210 0 0 00 0
Q ss_pred hc---------cccccccccccccCCCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 221 EN---------TKKLKETQDAGAGKEDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 221 ~~---------~~~~~~~~~~~v~nl~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
.. .....+..++||.||+++++++.|.+. .+ +..++. +..||.++|.|||.|.+..++..
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~-----~k~T~~skGtAFv~Fkt~~~~~~ 349 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVK-----DKDTGHSKGTAFVKFKTQIAAQN 349 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEe-----ccCCCCcccceEEEeccHHHHHH
Confidence 00 001112234799999999999999877 33 333443 37899999999999999999999
Q ss_pred HHHHH
Q 008385 286 ALEKL 290 (567)
Q Consensus 286 Ale~l 290 (567)
||+..
T Consensus 350 ci~~A 354 (678)
T KOG0127|consen 350 CIEAA 354 (678)
T ss_pred HHHhc
Confidence 98754
No 23
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=3.5e-17 Score=171.02 Aligned_cols=135 Identities=20% Similarity=0.296 Sum_probs=119.8
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
..|||| +++|+.+|..+|+.+|+|++++|++|. | +.|||||.|.++.+|.+||..||...|.|+.|+|.|++..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 469999 899999999999999999999999996 5 9999999999999999999999999999999999988664
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
..+ +||+||+++++...|.+++. ||.+.. +.+| ++|| ||+|++.++
T Consensus 76 ~~~--------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~------~~~g-~kg~-FV~f~~e~~ 127 (369)
T KOG0123|consen 76 PSL--------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVAT------DENG-SKGY-FVQFESEES 127 (369)
T ss_pred Cce--------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEE------cCCC-ceee-EEEeCCHHH
Confidence 222 59999999999999988833 666665 4555 9999 999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 008385 283 DQEALEKLTCMVEER 297 (567)
Q Consensus 283 a~kAle~ln~~i~e~ 297 (567)
|.+||++|||++..-
T Consensus 128 a~~ai~~~ng~ll~~ 142 (369)
T KOG0123|consen 128 AKKAIEKLNGMLLNG 142 (369)
T ss_pred HHHHHHHhcCcccCC
Confidence 999999999987643
No 24
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.69 E-value=4.3e-17 Score=157.53 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=111.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
..|||||||..+++..|+.||.+||+|+.|.|+.+ ||||..++...|..||..|||..|+|..|.|.-+.++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999765542
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008385 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (567)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kA 286 (567)
....++ ++|+||.+..+..+|+..+. ..++.-+ --++|+||.|+-.++|..|
T Consensus 75 ----------------sk~stk-l~vgNis~tctn~ElRa~fe~ygpviecd---------ivkdy~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 ----------------SKASTK-LHVGNISPTCTNQELRAKFEKYGPVIECD---------IVKDYAFVHFDRAEDAVEA 128 (346)
T ss_pred ----------------CCCccc-cccCCCCccccCHHHhhhhcccCCceeee---------eecceeEEEEeeccchHHH
Confidence 122233 59999999999999998844 1111111 1257999999999999999
Q ss_pred HHHHHHHHH
Q 008385 287 LEKLTCMVE 295 (567)
Q Consensus 287 le~ln~~i~ 295 (567)
|..|++..-
T Consensus 129 ir~l~~~~~ 137 (346)
T KOG0109|consen 129 IRGLDNTEF 137 (346)
T ss_pred Hhccccccc
Confidence 999988644
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=2.4e-16 Score=171.66 Aligned_cols=79 Identities=27% Similarity=0.496 Sum_probs=76.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+..+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.|+.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999954
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=9.7e-17 Score=163.15 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=119.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHh-CC-ceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLL-NK-FNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~-~tg~~kg~aFVef~~~~~A~~Ai~~L-ng-~~i~gr~l~ 201 (567)
...+.|||||||.+++.++|.+.|++.+ .|+.|-|...+ ...+++|||||+|.++..|..|-..| +| +.|.|..|.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 3578999999999999999999999988 47777776655 56789999999999999999999766 33 577899999
Q ss_pred EEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCH
Q 008385 202 LKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDR 280 (567)
Q Consensus 202 V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~ 280 (567)
|.|+.+...--.. .....+++||.||..++|++.|++++. ...+.++ .+.+.||||+|.++
T Consensus 242 VdWAep~~e~ded----------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRV--------kk~rDYaFVHf~eR 303 (506)
T KOG0117|consen 242 VDWAEPEEEPDED----------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERV--------KKPRDYAFVHFAER 303 (506)
T ss_pred eeccCcccCCChh----------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEe--------ecccceeEEeecch
Confidence 9999885332211 223345689999999999999998855 2223222 13467999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 281 KADQEALEKLTCM 293 (567)
Q Consensus 281 e~a~kAle~ln~~ 293 (567)
++|.+|++.+|+.
T Consensus 304 ~davkAm~~~ngk 316 (506)
T KOG0117|consen 304 EDAVKAMKETNGK 316 (506)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999985
No 27
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=6.6e-16 Score=141.09 Aligned_cols=82 Identities=18% Similarity=0.329 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+++|.+||.|.+|.|+.++.|++++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 65
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.65 E-value=4.2e-16 Score=170.30 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=114.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCc-eeEEEEee-cCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQ-YPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~-~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng--~~i~gr~l~V 202 (567)
..++|||+|||.++++++|.++|+.|+. |+.+.++. ...+++++|||||+|.+.++|..|+..|+. ..|.|+.|.|
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 4689999999999999999999999874 44443332 234678899999999999999999987754 4688999999
Q ss_pred EEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCC---cccccCCCCCCCCCCCCceEEEEeCC
Q 008385 203 KVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSP---ENLKDNETGNKESHDPTNFGVVTEED 279 (567)
Q Consensus 203 ~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~---~~~k~~~~~~~~~g~~kGfgFV~f~~ 279 (567)
.|+....... ........++||+||+..+++++|++++..+ .+.+. ...++||||+|.+
T Consensus 217 dwA~p~~~~d----------~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV--------~~~rgfAFVeF~s 278 (578)
T TIGR01648 217 DWAEPEEEVD----------EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV--------KKIRDYAFVHFED 278 (578)
T ss_pred Eeeccccccc----------ccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE--------EeecCeEEEEeCC
Confidence 9987642211 0111223457999999999999999985533 23321 2347899999999
Q ss_pred HHHHHHHHHHHHHH
Q 008385 280 RKADQEALEKLTCM 293 (567)
Q Consensus 280 ~e~a~kAle~ln~~ 293 (567)
.++|.+||+.||+.
T Consensus 279 ~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 279 REDAVKAMDELNGK 292 (578)
T ss_pred HHHHHHHHHHhCCC
Confidence 99999999999985
No 29
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.5e-16 Score=148.01 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 117 PLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 117 ~~~~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
.++......+.+|+|||-.||..+++.+|..+|-.||.|++.+|..|+.|+.++|||||.|.++.+|..||..|||+.|+
T Consensus 274 ~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIG 353 (371)
T KOG0146|consen 274 LLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIG 353 (371)
T ss_pred hhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhh
Confidence 34444555778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEch
Q 008385 197 GQELMLKVDQ 206 (567)
Q Consensus 197 gr~l~V~~a~ 206 (567)
-+.|+|.+-.
T Consensus 354 MKRLKVQLKR 363 (371)
T KOG0146|consen 354 MKRLKVQLKR 363 (371)
T ss_pred hhhhhhhhcC
Confidence 9999986543
No 30
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.63 E-value=2.4e-16 Score=164.62 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=136.7
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
+.+...+|||+.-|+..++.-+|.+||+.+|+|..|.++.|+.++.++|.|||+|.+..++..||. |.|+.+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEe
Confidence 346678999999999999999999999999999999999999999999999999999999999996 8999999999999
Q ss_pred EEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHH
Q 008385 203 KVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRK 281 (567)
Q Consensus 203 ~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e 281 (567)
..+++.++........-... ....+..-+||+||++.++++.++.++. ...+.......+..+|.++|||||+|.+.+
T Consensus 253 q~sEaeknr~a~~s~a~~~k-~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGK-GFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE 331 (549)
T ss_pred cccHHHHHHHHhcccccccc-ccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH
Confidence 98888766533332211100 1111111159999999999999999966 222322223334679999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008385 282 ADQEALEKLTCM 293 (567)
Q Consensus 282 ~a~kAle~ln~~ 293 (567)
.|.+|++.||++
T Consensus 332 ~ar~a~e~lngf 343 (549)
T KOG0147|consen 332 DARKALEQLNGF 343 (549)
T ss_pred HHHHHHHHhccc
Confidence 999999999994
No 31
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=9.7e-16 Score=160.27 Aligned_cols=150 Identities=21% Similarity=0.293 Sum_probs=124.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHH
Q 008385 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATRE 210 (567)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~ 210 (567)
|||.||+..++...|..+|+.||.|++|+|.++. .| ++|| ||.|.+.+.|.+||..|||..+.|+.|.|........
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 9999999999999999999999999999999994 55 9999 9999999999999999999999999999987665433
Q ss_pred HHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008385 211 YLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (567)
Q Consensus 211 ~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~ 284 (567)
....... .....+++ +|+|+....+...|..+.. +..++. +..|+++|||||.|.+.++|.
T Consensus 156 r~~~~~~------~~~~~t~v-~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~------~~~g~~~~~gfv~f~~~e~a~ 222 (369)
T KOG0123|consen 156 REAPLGE------YKKRFTNV-YVKNLEEDSTDEELKDLFSAYGSITSVAVMR------DSIGKSKGFGFVNFENPEDAK 222 (369)
T ss_pred hcccccc------hhhhhhhh-heeccccccchHHHHHhhcccCcceEEEEee------cCCCCCCCccceeecChhHHH
Confidence 2222111 12234454 9999999999999988844 333443 677889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008385 285 EALEKLTCMVEE 296 (567)
Q Consensus 285 kAle~ln~~i~e 296 (567)
.|++.|++.+-.
T Consensus 223 ~av~~l~~~~~~ 234 (369)
T KOG0123|consen 223 KAVETLNGKIFG 234 (369)
T ss_pred HHHHhccCCcCC
Confidence 999999987653
No 32
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=2e-14 Score=139.75 Aligned_cols=83 Identities=18% Similarity=0.406 Sum_probs=79.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..+.+||||+-|++.+++..|+..|..||.|..|.||.+..||+++|||||+|.+.-+...|+...+|..|+|+.|.|++
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
...
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 654
No 33
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.1e-15 Score=141.62 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=126.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~ 204 (567)
...+|||++||..+|..+|..+|+.||.|...+|..|..||.++|.|||.|....+|..||..|||+.-.| -+|.|+|
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 36789999999999999999999999999999999999999999999999999999999999999998765 4799998
Q ss_pred chhhHHH-----HH-hhhh-------------hhh-------------hc-------c---------ccccccccccccC
Q 008385 205 DQATREY-----LE-RYVD-------------KKT-------------EN-------T---------KKLKETQDAGAGK 236 (567)
Q Consensus 205 a~~~~~~-----~~-~~~~-------------~k~-------------~~-------~---------~~~~~~~~~~v~n 236 (567)
+...... +. -|.. .+- .. . ......-++||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 8653211 00 0000 000 00 0 0011112369999
Q ss_pred CCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 237 EDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 237 l~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|.+++++..|-++ +. ++.+.+| -.+.+.||||||++.+-++|..||..||+.
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD-----~ttnkCKGfgFVtMtNYdEAamAi~sLNGy 343 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRD-----FTTNKCKGFGFVTMTNYDEAAMAIASLNGY 343 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEec-----CCcccccceeEEEecchHHHHHHHHHhcCc
Confidence 9999999999988 44 3334442 566899999999999999999999999985
No 34
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.3e-15 Score=159.14 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=121.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t---g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.++|||.||++.+|...|..+|...|.|.++.|...+.. -.+.|||||+|.+.++|..|+..|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 344999999999999999999999999999988776422 23569999999999999999999999999999999999
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeC
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEE 278 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~ 278 (567)
+......... +........++| .|.||++.++-.+++.|+. ++.+.+. ...+.++|||||+|-
T Consensus 595 S~~k~~~~~g-----K~~~~kk~~tKI-lVRNipFeAt~rEVr~LF~aFGqlksvRlPKK-----~~k~a~rGF~Fv~f~ 663 (725)
T KOG0110|consen 595 SENKPASTVG-----KKKSKKKKGTKI-LVRNIPFEATKREVRKLFTAFGQLKSVRLPKK-----IGKGAHRGFGFVDFL 663 (725)
T ss_pred ccCccccccc-----ccccccccccee-eeeccchHHHHHHHHHHHhcccceeeeccchh-----hcchhhccceeeecc
Confidence 9822111111 111122234555 9999999999999999944 3444441 355778999999999
Q ss_pred CHHHHHHHHHHHHH
Q 008385 279 DRKADQEALEKLTC 292 (567)
Q Consensus 279 ~~e~a~kAle~ln~ 292 (567)
++..|..|+..|.+
T Consensus 664 t~~ea~nA~~al~S 677 (725)
T KOG0110|consen 664 TPREAKNAFDALGS 677 (725)
T ss_pred CcHHHHHHHHhhcc
Confidence 99999999988874
No 35
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=4.1e-15 Score=127.52 Aligned_cols=84 Identities=21% Similarity=0.375 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...++|||||||++.++++.|.+||+.||.|..|-+-.|+.+..++|||||+|.+.++|..|+..|+|+.|+.+.|.|+|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
....
T Consensus 113 D~GF 116 (153)
T KOG0121|consen 113 DAGF 116 (153)
T ss_pred cccc
Confidence 7663
No 36
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=3.3e-14 Score=112.76 Aligned_cols=70 Identities=33% Similarity=0.571 Sum_probs=67.6
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
|||+|||.++|+.+|+.+|+.||.|..+.+..+ .++.++|||||+|.+.++|..|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6899999999999999999999999999999999885
No 37
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.4e-13 Score=135.49 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....+.|+|+|||+.+.+.||+.+|.+||.|++|.|+.+ ...+||||||+|.+.++|.+|-..|||..|.|++|.|+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ 170 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNN 170 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEec
Confidence 445789999999999999999999999999999999997 678999999999999999999999999999999999997
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7664
No 38
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=3.1e-13 Score=128.33 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|-|.||+.++++.+|.+||.+||.|..|.|..|+.||.++|||||.|.+.++|.+||..|||+-++.-.|.|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
.+
T Consensus 267 kP 268 (270)
T KOG0122|consen 267 KP 268 (270)
T ss_pred CC
Confidence 75
No 39
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.49 E-value=1.6e-14 Score=146.33 Aligned_cols=154 Identities=18% Similarity=0.235 Sum_probs=123.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++||||+|++.++++.|+..|..||.|..|.|+.++.++.++||+||+|++...+..+|.. .-+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 578999999999999999999999999999999999999999999999999999999999874 6788999999887665
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
+....... .....+..+||+.|+..+++.+|++.+. ...+.....-.+..+..++|||||+|.+.+++.+
T Consensus 84 ~r~~~~~~---------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdk 154 (311)
T KOG4205|consen 84 SREDQTKV---------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDK 154 (311)
T ss_pred Cccccccc---------ccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccce
Confidence 54221110 0111344469999999999999999844 1122222222457889999999999999999998
Q ss_pred HHHHH
Q 008385 286 ALEKL 290 (567)
Q Consensus 286 Ale~l 290 (567)
++...
T Consensus 155 v~~~~ 159 (311)
T KOG4205|consen 155 VTLQK 159 (311)
T ss_pred ecccc
Confidence 87643
No 40
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=6e-14 Score=132.76 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=74.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
+...+.||||+|+|.+..+.|+.+|.+||.|+.+.|+.|+.||+++|||||+|.+.++|.+|+.. ..-.|+|++..|++
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 44578999999999999999999999999999999999999999999999999999999999985 66789999988876
Q ss_pred ch
Q 008385 205 DQ 206 (567)
Q Consensus 205 a~ 206 (567)
+-
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 53
No 41
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.2e-13 Score=134.88 Aligned_cols=86 Identities=19% Similarity=0.342 Sum_probs=81.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.++.+.|||..|++.+|+++|.-+|+.||+|.+|.|+++..||.+..||||+|.+.+++..|+..|+++.|+.+.|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHH
Q 008385 205 DQATRE 210 (567)
Q Consensus 205 a~~~~~ 210 (567)
+++...
T Consensus 316 SQSVsk 321 (479)
T KOG0415|consen 316 SQSVSK 321 (479)
T ss_pred hhhhhh
Confidence 988643
No 42
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=4.9e-13 Score=137.36 Aligned_cols=85 Identities=20% Similarity=0.381 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCH--HHHHHHHHHhCCceeCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESA--EGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~--~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
....+||||||++.+++++|..+|+.||.|..|.|++ .|| +|||||+|.+. .++.+||..|||..|.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4568999999999999999999999999999999994 477 89999999987 78999999999999999999998
Q ss_pred EchhhHHHHHhhh
Q 008385 204 VDQATREYLERYV 216 (567)
Q Consensus 204 ~a~~~~~~~~~~~ 216 (567)
.+.. .|+..+.
T Consensus 84 KAKP--~YLeRLk 94 (759)
T PLN03213 84 KAKE--HYLARLK 94 (759)
T ss_pred eccH--HHHHHHH
Confidence 7754 3544443
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.6e-14 Score=131.07 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..+.-|||||||+..|+.+|..+|++||.|+.|.+++|+.||+++||||+.|++..+...|+..|||+.|.|+.|+|+..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999754
No 44
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4.7e-13 Score=121.80 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=113.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||||||.++.+.+|..||.+||.|..|.+... ..+.+||||+|+++.+|..||..-+|..++|..|.|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35789999999999999999999999999999988543 345689999999999999999999999999999999998
Q ss_pred hhhHHHHHh---hhhhhh--------hccccccccccccccCCCcccchhhhcCCC-C---CCcccccCCCCCCCCCCCC
Q 008385 206 QATREYLER---YVDKKT--------ENTKKLKETQDAGAGKEDESVQSVEKNEPT-K---SPENLKDNETGNKESHDPT 270 (567)
Q Consensus 206 ~~~~~~~~~---~~~~k~--------~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~-k---s~~~~k~~~~~~~~~g~~k 270 (567)
..-...... +...-. ...-..-...-+.|..|+.+.++.+|++.. + .|+..- ..-
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv----------~rD 150 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADV----------QRD 150 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeee----------ecc
Confidence 664311110 000000 000000011125789999999999998882 2 333111 113
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 008385 271 NFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 271 GfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|+|.|.|-..++..-|+.+|...
T Consensus 151 g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 151 GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred cceeeeeeehhhHHHHHHhhccc
Confidence 59999999999999999888653
No 45
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=8.6e-13 Score=105.14 Aligned_cols=70 Identities=33% Similarity=0.575 Sum_probs=65.1
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
|||+|||+++++++|..+|+.||.|..+.+..++. |.++|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999876 99999999999999999999999999999999874
No 46
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.41 E-value=6.7e-13 Score=145.56 Aligned_cols=82 Identities=24% Similarity=0.428 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+||++.+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 64
No 47
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.7e-13 Score=121.17 Aligned_cols=77 Identities=29% Similarity=0.449 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..+.||||||+..++..+|..+|..||.|.+|.|... +.|||||+|+++.+|..|+..|+|..|.|..|.|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4789999999999999999999999999999999775 47999999999999999999999999999999998876
Q ss_pred hh
Q 008385 207 AT 208 (567)
Q Consensus 207 ~~ 208 (567)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 63
No 48
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=9.7e-13 Score=128.83 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
.++|||||||+.+|+.+|+++|+.||.|.+|.|+.+. .++|||||+|.+.++|..||. |||..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998874 357999999999999999996 899999999999988754
No 49
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.41 E-value=3.7e-13 Score=124.56 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|-|-||.+.++.++|+.+|.+||.|..|.|..|+.|+.++|||||-|....+|+.|+..|+|..|+|+.|.|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 54
No 50
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=1.2e-12 Score=136.25 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~ 204 (567)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+|+++|||||+|.+.++|..||..||++.|.| +.|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999999999999999999999999999999999999876 6888888
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 272 a~~ 274 (346)
T TIGR01659 272 AEE 274 (346)
T ss_pred CCc
Confidence 765
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.38 E-value=1.6e-12 Score=123.01 Aligned_cols=153 Identities=13% Similarity=0.162 Sum_probs=120.2
Q ss_pred CceEEEcCCCCCCcHHHHHH----HHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLS----VLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~----~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
..||||.||+..+..++|+. ||++||.|+.|.+.. |.+.+|-|||.|.+.+.|..|+..|+|+.|.|+.++|.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 44999999999999998877 999999999987754 78999999999999999999999999999999999999
Q ss_pred EchhhHHHHHhhh----h--hh--hh--c-------------------------cccccccccccccCCCcccchhhhcC
Q 008385 204 VDQATREYLERYV----D--KK--TE--N-------------------------TKKLKETQDAGAGKEDESVQSVEKNE 248 (567)
Q Consensus 204 ~a~~~~~~~~~~~----~--~k--~~--~-------------------------~~~~~~~~~~~v~nl~~~~~e~~l~e 248 (567)
|+....+.+.... . .+ .+ . .....+.+++|+.||+..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9988877766521 0 00 00 0 01134567789999999999888877
Q ss_pred CCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 249 PTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 249 ~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
++. .+..+. .-.|.+||+|.+...+..|...+.+.
T Consensus 166 lf~qf~g~keir~i~----------~~~~iAfve~~~d~~a~~a~~~lq~~ 206 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIP----------PRSGIAFVEFLSDRQASAAQQALQGF 206 (221)
T ss_pred HHhhCcccceeEecc----------CCCceeEEecchhhhhHHHhhhhccc
Confidence 733 222221 13579999999998888888777764
No 52
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.9e-12 Score=122.77 Aligned_cols=82 Identities=21% Similarity=0.372 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-C--CeEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-D--GQELMLK 203 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i-~--gr~l~V~ 203 (567)
..+.||||-|...-.+++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|..||..|||... - ...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 57899999999999999999999999999999999985 899999999999999999999999999654 3 3578898
Q ss_pred EchhhH
Q 008385 204 VDQATR 209 (567)
Q Consensus 204 ~a~~~~ 209 (567)
|++..+
T Consensus 97 ~ADTdk 102 (371)
T KOG0146|consen 97 FADTDK 102 (371)
T ss_pred eccchH
Confidence 776543
No 53
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=5.1e-12 Score=121.86 Aligned_cols=76 Identities=17% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...+|||+||++.+|+.+|++||+.||.|.+|.|+.+ +.+.|||||+|.+..+|..||. |||..|.++.|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 4689999999999999999999999999999999987 4556899999999999999996 89999999999986544
No 54
>smart00362 RRM_2 RNA recognition motif.
Probab=99.32 E-value=1e-11 Score=97.73 Aligned_cols=71 Identities=30% Similarity=0.539 Sum_probs=67.4
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
+|||+|||..++..+|+.+|..||.|..+.+..++ +.+.|||||+|.+...|..|+..|+|..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999998875 788999999999999999999999999999999887
No 55
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-12 Score=121.43 Aligned_cols=84 Identities=21% Similarity=0.395 Sum_probs=80.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...+|||||+|...|++.-|...|-.||.|..|.++.|-.+++++|||||+|...++|..||..||+.+|.|+.|+|+++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhH
Q 008385 206 QATR 209 (567)
Q Consensus 206 ~~~~ 209 (567)
.+.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7653
No 56
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.29 E-value=5.2e-12 Score=133.46 Aligned_cols=82 Identities=33% Similarity=0.594 Sum_probs=79.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
+.|||||||+.++++.|..+|+..|.|.+++++.|+.||+++|||||+|.+.+.|..|+..|||..+.|+.|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred HH
Q 008385 209 RE 210 (567)
Q Consensus 209 ~~ 210 (567)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.29 E-value=8.9e-12 Score=130.70 Aligned_cols=77 Identities=26% Similarity=0.517 Sum_probs=73.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...||||||.+++++.+|+.+|..||.|..|.+..|..||.++|||||+|.+.++|.+|+..|||+.|.|+.|+|..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 34499999999999999999999999999999999988999999999999999999999999999999999999973
No 58
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=7e-12 Score=108.63 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=77.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
....|||.++...+|+++|...|..||.|+.+.+-.|+.||..+|||+|+|.+...|+.||..|||..|.|+.|.|+|+-
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999874
No 59
>smart00360 RRM RNA recognition motif.
Probab=99.27 E-value=2.4e-11 Score=95.16 Aligned_cols=70 Identities=31% Similarity=0.539 Sum_probs=67.0
Q ss_pred EcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 133 VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 133 VgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
|+|||..++.++|+.+|..||.|..+.+..++.++.++|||||+|.+.++|..|+..|++..|+|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 6899999999999999999999999999998878999999999999999999999999999999999887
No 60
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=1.8e-11 Score=117.91 Aligned_cols=77 Identities=25% Similarity=0.404 Sum_probs=72.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++||||||+..+|++.|+..|+.||.|..|+|..+ +||+||.|.+.++|..||..+||.+|+|+.+++.|
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW 234 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW 234 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence 456899999999999999999999999999999999887 59999999999999999999999999999999987
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
.+.
T Consensus 235 GKe 237 (321)
T KOG0148|consen 235 GKE 237 (321)
T ss_pred ccc
Confidence 655
No 61
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.26 E-value=4.8e-11 Score=111.93 Aligned_cols=163 Identities=12% Similarity=0.103 Sum_probs=112.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELML 202 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~-~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~---gr~l~V 202 (567)
..+||||.+||.++..-+|..||..|-....+.|... +...-++-+|||+|.+...|..|+..|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 4799999999999999999999999988877766443 222234579999999999999999999999997 889999
Q ss_pred EEchhhHHHHHhhh-----------------hhhhh--------------------------------------------
Q 008385 203 KVDQATREYLERYV-----------------DKKTE-------------------------------------------- 221 (567)
Q Consensus 203 ~~a~~~~~~~~~~~-----------------~~k~~-------------------------------------------- 221 (567)
.++++..+.-.... ...+.
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 87765332110000 00000
Q ss_pred -------cccccccc---ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008385 222 -------NTKKLKET---QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALE 288 (567)
Q Consensus 222 -------~~~~~~~~---~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle 288 (567)
.......+ ..+||.||...++++.|+.+.+ ...+.+.- ...| -..+||.|++.+.|..|+.
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~----~~~g--~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIR----ARGG--MPVAFADFEEIEQATDAMN 266 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEe----cCCC--cceEeecHHHHHHHHHHHH
Confidence 00000000 1269999999999999999944 22233311 1122 3478999998888888888
Q ss_pred HHHHHHH
Q 008385 289 KLTCMVE 295 (567)
Q Consensus 289 ~ln~~i~ 295 (567)
.|.|.+-
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 7777543
No 62
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=5.2e-11 Score=98.75 Aligned_cols=82 Identities=16% Similarity=0.290 Sum_probs=74.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..+.|||.|||+.+|.+++.++|..||.|..|+|-. +...+|-|||.|++..+|.+|+..|+|+.+.++.|.|-+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~---~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN---TKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecC---ccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 478899999999999999999999999999999855 45668999999999999999999999999999999999887
Q ss_pred hhHHH
Q 008385 207 ATREY 211 (567)
Q Consensus 207 ~~~~~ 211 (567)
....+
T Consensus 94 ~~~~~ 98 (124)
T KOG0114|consen 94 PEDAF 98 (124)
T ss_pred HHHHH
Confidence 76544
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.25 E-value=2.3e-11 Score=121.36 Aligned_cols=124 Identities=22% Similarity=0.334 Sum_probs=95.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
.++|||||||+.+++++|..+|..||.|..+.++.++.+|.++|||||+|.+.++|..|+..|+|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999988999999999999999999999999999999999999998542
Q ss_pred ----hHHHHH----hhhhhhh-hccccccccccccccCCCcccchhhhcCCCC
Q 008385 208 ----TREYLE----RYVDKKT-ENTKKLKETQDAGAGKEDESVQSVEKNEPTK 251 (567)
Q Consensus 208 ----~~~~~~----~~~~~k~-~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k 251 (567)
...... .+..... ............++.+++..++...+..++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFK 247 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcc
Confidence 111110 0000000 0011112223358888888888887776633
No 64
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.24 E-value=8.4e-11 Score=119.63 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=118.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHh-hCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..+.+||.|||+++...+|+.||. +.|.|..|.+..| .+|+++|||.|+|.+++.+++|++.||.+.+.|+.|.|+-.
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 356799999999999999999997 6889999999999 59999999999999999999999999999999999999843
Q ss_pred hhhHH-------------HHH------hhh------------------hhhhhc--------------------------
Q 008385 206 QATRE-------------YLE------RYV------------------DKKTEN-------------------------- 222 (567)
Q Consensus 206 ~~~~~-------------~~~------~~~------------------~~k~~~-------------------------- 222 (567)
..... +.. -|. ..+...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 22100 000 000 000000
Q ss_pred -----ccc--ccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 223 -----TKK--LKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 223 -----~~~--~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
... ....+-.||.||.+.+....|.+.+.-...+.-.....+..|.++||+.+.|..+-.|..||.+++.
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000 0011124889999999888887774411111111112255678999999999999999999999983
No 65
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=5.4e-11 Score=121.16 Aligned_cols=85 Identities=18% Similarity=0.288 Sum_probs=79.2
Q ss_pred CCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 123 PAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 123 ~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
...+.+.+|||++||..+.+.+|-..|..||.|++.++..|+.||-++|||||.|++..+|..||..|||+.|+++.|+|
T Consensus 419 ~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkV 498 (510)
T KOG0144|consen 419 VEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKV 498 (510)
T ss_pred ccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceE
Confidence 34566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEchh
Q 008385 203 KVDQA 207 (567)
Q Consensus 203 ~~a~~ 207 (567)
.....
T Consensus 499 Qlk~~ 503 (510)
T KOG0144|consen 499 QLKRD 503 (510)
T ss_pred Eeeec
Confidence 76543
No 66
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.20 E-value=1.4e-10 Score=91.66 Aligned_cols=73 Identities=27% Similarity=0.492 Sum_probs=68.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
+|||+|||..+++++|..+|..||.|..+.+..++.+ .+.|+|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999987644 778999999999999999999999999999999885
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=1.9e-11 Score=121.65 Aligned_cols=117 Identities=24% Similarity=0.401 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC-------CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEe
Q 008385 91 LPSVARPPVPGIPGVR--PIMPPVVRPVPLPTVTPA-------EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRA 161 (567)
Q Consensus 91 ~P~~~~~~~~~~pg~~--p~~~p~~~p~~~~~~~~~-------~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~ 161 (567)
+|.+++.++.+|+|.- .....+++|+++|++.+. ....+.|||..+.++.++.+|+.+|..||.|++|.+.
T Consensus 164 vPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LA 243 (544)
T KOG0124|consen 164 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLA 243 (544)
T ss_pred CcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEee
Confidence 3555555555555441 122357788888887654 5668999999999999999999999999999999999
Q ss_pred ecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 162 QYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 162 ~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
+++.++.++|||||+|.+..+...||..||-+.|+|+.|+|..+-.
T Consensus 244 r~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 244 RAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred ccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999999999999999999975543
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.16 E-value=2.4e-10 Score=118.69 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=121.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...-|-+.+|||+||+++|..||+.|+ |.++.+.+ .+|++.|-|||+|.+.+++..|++. +-..+..+-|.|-.+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 345677889999999999999999998 66655554 4899999999999999999999994 8888999999997664
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~-~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
.... .|.-+... ........|+-+..||+.+++++|.+|+....|+.+ +....+..|++.|=|||.|++.+.|++
T Consensus 85 ~~e~---d~~~~~~g-~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 85 GAEA---DWVMRPGG-PNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred Cccc---cccccCCC-CCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 4321 11111111 111122334567789999999999999663333332 223457778899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 008385 286 ALEKLTCMVEER 297 (567)
Q Consensus 286 Ale~ln~~i~e~ 297 (567)
||...+..|-.+
T Consensus 161 Al~rhre~iGhR 172 (510)
T KOG4211|consen 161 ALGRHRENIGHR 172 (510)
T ss_pred HHHHHHHhhccc
Confidence 999888765443
No 69
>smart00361 RRM_1 RNA recognition motif.
Probab=99.10 E-value=4e-10 Score=89.94 Aligned_cols=61 Identities=20% Similarity=0.169 Sum_probs=55.5
Q ss_pred HHHHHHHHh----hCCceeEEE-EeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 142 SDFVLSVLK----VCGTVKSWK-RAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 142 e~~L~~~F~----~~G~v~~~~-i~~~~~t--g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
+++|..+|+ .||.|.++. |+.++.+ |.++|||||+|.+.++|..|+..|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467888998 999999995 7777666 999999999999999999999999999999999976
No 70
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=8.4e-11 Score=112.44 Aligned_cols=151 Identities=20% Similarity=0.219 Sum_probs=109.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
..||||+||+.+.+.+|..||..||.|..|.+.. ||+||+|.+.-+|..||..|||..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 4689999999999999999999999999998754 79999999999999999999999999988888887753
Q ss_pred HHHHHhhhhh----hhhcccc-ccccccccccCCCcccchhhhcCCC-CCCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 209 REYLERYVDK----KTENTKK-LKETQDAGAGKEDESVQSVEKNEPT-KSPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 209 ~~~~~~~~~~----k~~~~~~-~~~~~~~~v~nl~~~~~e~~l~e~~-ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
......-... -...... ......+.+.|+...+.+.+|.+.. ....+.- .. -..+|+||.|.+.++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~------~~--~~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTY------VD--ARRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCch------hh--hhccccceeehhhhh
Confidence 2211000000 0000011 1222235778888888888887773 2111111 00 157899999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 283 DQEALEKLTCMVE 295 (567)
Q Consensus 283 a~kAle~ln~~i~ 295 (567)
+..||+.|++.-.
T Consensus 146 a~ra~~~l~~~~~ 158 (216)
T KOG0106|consen 146 AKRALEKLDGKKL 158 (216)
T ss_pred hhhcchhccchhh
Confidence 9999999988644
No 71
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.05 E-value=9.7e-10 Score=83.59 Aligned_cols=56 Identities=29% Similarity=0.452 Sum_probs=50.7
Q ss_pred HHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 145 VLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 145 L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
|..+|++||.|..+.+.... .++|||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997652 699999999999999999999999999999999875
No 72
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.03 E-value=2e-09 Score=107.29 Aligned_cols=172 Identities=15% Similarity=0.176 Sum_probs=114.1
Q ss_pred CCCCCCCCCceEEEcCCCCCCcHHHHHHHHhhCCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 008385 120 TVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (567)
Q Consensus 120 ~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln 191 (567)
...+.....+.|||+|||.++|.+++..+|++||.|. .|+|..+. .|+.+|=|.|.|...+++..||..|+
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilD 204 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILD 204 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhC
Confidence 3344455677899999999999999999999999886 47888884 69999999999999999999999999
Q ss_pred CceeCCeEEEEEEchhhHHH--------------HHhhhhhhhh---------ccccccccccccccCCCcc----cchh
Q 008385 192 KFNIDGQELMLKVDQATREY--------------LERYVDKKTE---------NTKKLKETQDAGAGKEDES----VQSV 244 (567)
Q Consensus 192 g~~i~gr~l~V~~a~~~~~~--------------~~~~~~~k~~---------~~~~~~~~~~~~v~nl~~~----~~e~ 244 (567)
+..|.|+.|+|..++-..+- ...+...+.. .........++.++|+-.- .+.+
T Consensus 205 e~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 205 EDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred cccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHH
Confidence 99999999999865432110 0000000000 0112233344566665211 1222
Q ss_pred hhcCCCC-------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 245 EKNEPTK-------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 245 ~l~e~~k-------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
.+.++.. -++.++ ...--...+.|.+-|.|.+.+.|..||..|+|..-
T Consensus 285 l~~dlkedl~eec~K~G~v~---~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVR---KVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcc---eEEEeccCCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 2333300 111111 00012245688999999999999999999999643
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=102.27 Aligned_cols=86 Identities=17% Similarity=0.380 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
......||+|.|...++++.|-..|.+|-.....++++++.||+++|||||.|.++.++..|+..|||..++.+.|.+.-
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred chhhHH
Q 008385 205 DQATRE 210 (567)
Q Consensus 205 a~~~~~ 210 (567)
+.+...
T Consensus 267 S~wkeR 272 (290)
T KOG0226|consen 267 SEWKER 272 (290)
T ss_pred hhHHhh
Confidence 655443
No 74
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=3.9e-10 Score=102.98 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.+||||||.+.+++..|..+|+.||.|... .|++++.||.++|||||.|.+.+.+.+||..|||+.++.+.|.|.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya 174 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYA 174 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEE
Confidence 45899999999999999999999999988764 88999999999999999999999999999999999999999999887
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 175 ~k 176 (203)
T KOG0131|consen 175 FK 176 (203)
T ss_pred Ee
Confidence 54
No 75
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=1.9e-09 Score=100.68 Aligned_cols=84 Identities=25% Similarity=0.334 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhC-CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC-GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~-G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
.....-+||..||..+.+.+|..+|.+| |.|..+.+.+++.||.++|||||+|.+.+.|..|-..||++.|.|+.|.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4456789999999999999999999999 677788888999999999999999999999999999999999999999998
Q ss_pred Echhh
Q 008385 204 VDQAT 208 (567)
Q Consensus 204 ~a~~~ 208 (567)
|-...
T Consensus 126 vmppe 130 (214)
T KOG4208|consen 126 VMPPE 130 (214)
T ss_pred EeCch
Confidence 76553
No 76
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.94 E-value=7.5e-10 Score=107.81 Aligned_cols=76 Identities=24% Similarity=0.432 Sum_probs=71.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+..++||||||.+.|+..+|+..|.+||+|+.|.|+.+ |+||.|.-.++|..||..|||.+|.|+.++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 556889999999999999999999999999999999986 999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+.+.
T Consensus 147 stsr 150 (346)
T KOG0109|consen 147 STSR 150 (346)
T ss_pred eccc
Confidence 7664
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.90 E-value=9.1e-10 Score=103.20 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=95.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..+||||+||...|+++.|.++|-..|+|..|.|..++ .++.+ ||||.|.+..++.-|+.+|||..+.+..|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 47899999999999999999999999999999998875 56666 99999999999999999999999999998886432
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kA 286 (567)
... ..-|...++.+.+.....+..-...+.-....+|.++.|+||++--..+.-.+
T Consensus 86 G~s------------------------hapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 86 GNS------------------------HAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred CCC------------------------cchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 210 00133334444443331111111111112245588999999987655444444
Q ss_pred H
Q 008385 287 L 287 (567)
Q Consensus 287 l 287 (567)
+
T Consensus 142 ~ 142 (267)
T KOG4454|consen 142 L 142 (267)
T ss_pred h
Confidence 3
No 78
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.88 E-value=3.2e-09 Score=113.10 Aligned_cols=166 Identities=20% Similarity=0.215 Sum_probs=115.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
-..+.+|||+||..+++..+.+++..||.+....++.+..+|.++||||++|.+..-...|+..|||..+++..|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred hhhHHHHHhhhh---------hhhhccccccccccccccCCC--cc-cchhhhcCC--------CC-----CCcccccCC
Q 008385 206 QATREYLERYVD---------KKTENTKKLKETQDAGAGKED--ES-VQSVEKNEP--------TK-----SPENLKDNE 260 (567)
Q Consensus 206 ~~~~~~~~~~~~---------~k~~~~~~~~~~~~~~v~nl~--~~-~~e~~l~e~--------~k-----s~~~~k~~~ 260 (567)
-........+.. ...........+.|+...|+- .. .++++..++ ++ ++.+....
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~- 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY- 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC-
Confidence 433222211111 000001122233333333320 11 122222222 11 33333332
Q ss_pred CCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 261 TGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 261 ~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+......-|--||+|.+.+++++|.+.|+|.
T Consensus 446 -~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr 477 (500)
T KOG0120|consen 446 -PDENPVPGTGKVFVEFADTEDSQRAMEELTGR 477 (500)
T ss_pred -CCCCcCCCcccEEEEecChHHHHHHHHHccCc
Confidence 22444555677899999999999999999884
No 79
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.88 E-value=1.1e-09 Score=110.44 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=61.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE-
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK- 203 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t---g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~- 203 (567)
...|.|.||.+.+|.++|+.||...|.|..+.|+..... ......|||.|.+...+..|.. |.++.|-++.|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 348999999999999999999999999999988764311 2234689999999999998887 56666666655554
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
|...
T Consensus 86 ~~~~ 89 (479)
T KOG4676|consen 86 YGDE 89 (479)
T ss_pred cCCC
Confidence 4443
No 80
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=1.2e-08 Score=110.92 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
++|||||+|+.++++.+|..+|..||.|.+|.++.. +|||||.+....+|.+|+..|+.+.|.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998765 59999999999999999999999999999999999865
Q ss_pred h
Q 008385 208 T 208 (567)
Q Consensus 208 ~ 208 (567)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 3
No 81
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.76 E-value=8.3e-08 Score=97.61 Aligned_cols=155 Identities=16% Similarity=0.182 Sum_probs=111.6
Q ss_pred CceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 128 ~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
.+.|.|.||.. .+|.+.|..+|+.||.|..|+|..++ +--|.|.|.+...|.-|+..|+|..|.|+.|+|.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67899999976 79999999999999999999999874 2579999999999999999999999999999999876
Q ss_pred hhHHHHHh-----------hhh-----hhhhcccc----ccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCC
Q 008385 207 ATREYLER-----------YVD-----KKTENTKK----LKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKE 265 (567)
Q Consensus 207 ~~~~~~~~-----------~~~-----~k~~~~~~----~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~ 265 (567)
.....+.. |.. .++...++ ..++..+-..|++.++++++++.++. ....++. ...
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vka----fkf 447 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKA----FKF 447 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEe----eee
Confidence 54322221 110 00001111 01111235789999999999998844 2222221 122
Q ss_pred CCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 266 SHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 266 ~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
-++.+-++.+.+++.+.|..|+-.++
T Consensus 448 f~kd~kmal~q~~sveeA~~ali~~h 473 (492)
T KOG1190|consen 448 FQKDRKMALPQLESVEEAIQALIDLH 473 (492)
T ss_pred cCCCcceeecccCChhHhhhhccccc
Confidence 34455699999999999988876554
No 82
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2.2e-08 Score=100.11 Aligned_cols=80 Identities=21% Similarity=0.351 Sum_probs=71.5
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH-HhCCceeCCeEE
Q 008385 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR-LLNKFNIDGQEL 200 (567)
Q Consensus 122 ~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~-~Lng~~i~gr~l 200 (567)
.+.+....+||||+|...+++.+|+.+|-+||.|.++.++.. ++||||+|.+..+|+.|.. .+|...|+|+.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344667899999999999999999999999999999999876 4799999999999999884 568788899999
Q ss_pred EEEEchh
Q 008385 201 MLKVDQA 207 (567)
Q Consensus 201 ~V~~a~~ 207 (567)
.|.|+.+
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9998877
No 83
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.72 E-value=1.1e-08 Score=110.48 Aligned_cols=86 Identities=24% Similarity=0.374 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....+.|+|.|||+..+-.+++.||..||.|.+|.|+.-...+.++|||||+|-++..|.+|+..|.++.|.|+.|++.|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 44578999999999999999999999999999999987756778899999999999999999999999999999999999
Q ss_pred chhhHH
Q 008385 205 DQATRE 210 (567)
Q Consensus 205 a~~~~~ 210 (567)
+.....
T Consensus 690 A~~d~~ 695 (725)
T KOG0110|consen 690 AKSDNT 695 (725)
T ss_pred hccchH
Confidence 876533
No 84
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.70 E-value=8.5e-09 Score=104.07 Aligned_cols=67 Identities=15% Similarity=-0.007 Sum_probs=56.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
....+||+|++|+..+...++.++|..+|.|....+. .|...-||.|+|....+...|+. ++|..+.
T Consensus 148 eeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 148 EEIRRTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred HHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 3345899999999999999999999999999888763 45556788899999999999998 4777664
No 85
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.65 E-value=8.3e-08 Score=103.45 Aligned_cols=89 Identities=24% Similarity=0.358 Sum_probs=77.6
Q ss_pred CCCCCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecC---CCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 120 TVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP---SNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 120 ~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~---~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
.....++..++||||||++.+++.+|...|..||+|.+++|+..+ ..-....||||.|-+..+|.+|+..|+|..|.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 334446678999999999999999999999999999999998765 22345679999999999999999999999999
Q ss_pred CeEEEEEEchhh
Q 008385 197 GQELMLKVDQAT 208 (567)
Q Consensus 197 gr~l~V~~a~~~ 208 (567)
+..+++.|+.+.
T Consensus 246 ~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 EYEMKLGWGKAV 257 (877)
T ss_pred eeeeeecccccc
Confidence 999999988654
No 86
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.62 E-value=1e-07 Score=91.57 Aligned_cols=153 Identities=14% Similarity=0.134 Sum_probs=102.1
Q ss_pred CceEEEcCCCCCCcHHH-H--HHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 128 QTKVYVGKIAPTADSDF-V--LSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~-L--~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.-.+|++|+-..+..+- | ...|+.|-.+...+++.+ .-+...+++|+.|.....-..+...-++..|+-..|++.-
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 44556666655555543 2 567787777777888877 4788889999999987777777766677777666655432
Q ss_pred chh-hHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCH
Q 008385 205 DQA-TREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDR 280 (567)
Q Consensus 205 a~~-~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~ 280 (567)
... ....+.+|... ... +|+|.|.-+++++.|... .+ +....++.. +..+|+++|||||.|.+.
T Consensus 175 gtswedPsl~ew~~~---------DfR-IfcgdlgNevnd~vl~raf~Kfpsf~~akviR--dkRTgKSkgygfVSf~~p 242 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDED---------DFR-IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIR--DKRTGKSKGYGFVSFRDP 242 (290)
T ss_pred ccccCCcccccCccc---------cce-eecccccccccHHHHHHHHHhccchhhccccc--cccccccccceeeeecCH
Confidence 211 11112222221 112 489999988988887544 22 322222222 278999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 281 KADQEALEKLTCM 293 (567)
Q Consensus 281 e~a~kAle~ln~~ 293 (567)
.++..|+..|++-
T Consensus 243 ad~~rAmrem~gk 255 (290)
T KOG0226|consen 243 ADYVRAMREMNGK 255 (290)
T ss_pred HHHHHHHHhhccc
Confidence 9999999999874
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.59 E-value=9.9e-08 Score=97.64 Aligned_cols=75 Identities=20% Similarity=0.287 Sum_probs=69.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....|+|||.|||+++|...|+.-|..||.|.++.|+- .|+++| .|.|.++++|+.|+..|+|..|+|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 45678999999999999999999999999999999854 588877 9999999999999999999999999999976
No 88
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=3.2e-07 Score=96.83 Aligned_cols=77 Identities=26% Similarity=0.405 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...+|||.|||++++..+|.++|..||.|....|..-...++..|||||+|.+..++..||.+ +-..|+|+.|.|.-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 456699999999999999999999999999988876533355559999999999999999996 78999999999963
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1.4e-07 Score=100.66 Aligned_cols=165 Identities=18% Similarity=0.176 Sum_probs=114.4
Q ss_pred CCCCCCCceEEEcCCCCCCcHHHHHHHHhhC-----------C-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 008385 122 TPAEKPQTKVYVGKIAPTADSDFVLSVLKVC-----------G-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (567)
Q Consensus 122 ~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~-----------G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~ 189 (567)
.........+||+++++.+++..+..+|..- | .|+.|.+-.. +.|+|++|.+...|..|+.
T Consensus 169 ~~~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~------~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 169 SQATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE------KNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred cchhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc------ccceeEEecCCCchhhhhc-
Confidence 3345567899999999999999999998753 3 3666666443 5899999999999999998
Q ss_pred hCCceeCCeEEEEEEchh---hHHHHHhh------hhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCC
Q 008385 190 LNKFNIDGQELMLKVDQA---TREYLERY------VDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNE 260 (567)
Q Consensus 190 Lng~~i~gr~l~V~~a~~---~~~~~~~~------~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~ 260 (567)
+++..+.|..+++..... ....+... ............... .||++|+..+++..+.++..++.-.+...
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~k-i~v~~lp~~l~~~q~~Ell~~fg~lk~f~ 320 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNK-IFVGGLPLYLTEDQVKELLDSFGPLKAFR 320 (500)
T ss_pred ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccch-hhhccCcCccCHHHHHHHHHhcccchhhe
Confidence 699999999888753211 11111111 000001111112222 59999999999999988844222222111
Q ss_pred C-CCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 261 T-GNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 261 ~-~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
. .+..+|.++||+|++|.+.-....|+..|||+-
T Consensus 321 lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 321 LVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred eecccccccccceeeeeeeCCcchhhhhcccchhh
Confidence 1 235669999999999999999999999999973
No 90
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.53 E-value=1.2e-07 Score=92.98 Aligned_cols=80 Identities=25% Similarity=0.387 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
......+||||+.+.+|...+...|..||.|..+.|..+..+|.++||+||+|.+...+..||. |||..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 4457899999999999999999999999999999999999999999999999999999999999 899999999999865
Q ss_pred c
Q 008385 205 D 205 (567)
Q Consensus 205 a 205 (567)
-
T Consensus 177 ~ 177 (231)
T KOG4209|consen 177 K 177 (231)
T ss_pred e
Confidence 4
No 91
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.2e-07 Score=89.95 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=74.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..-.++|+|.||++.|+..+|++||..||.+..+.|-+++ +|.+.|+|-|.|...++|..|+..|||+.++|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 3445889999999999999999999999999888888885 899999999999999999999999999999999998876
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
...
T Consensus 159 i~~ 161 (243)
T KOG0533|consen 159 ISS 161 (243)
T ss_pred ecC
Confidence 544
No 92
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.42 E-value=2.8e-08 Score=109.37 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=112.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...++||+||+..+.+.+|...|..+|.|..+.+.....++..+|+|||+|.....+.+||....+..+ |+.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-gK~------- 737 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-GKI------- 737 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-hhh-------
Confidence 457899999999999999999999999998888887778999999999999999999999986444433 311
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kA 286 (567)
.++|.|.++..|.+.++.+....+..+.-.......|+.+|.+||.|.+..++.++
T Consensus 738 ------------------------~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~ 793 (881)
T KOG0128|consen 738 ------------------------SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRK 793 (881)
T ss_pred ------------------------hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhh
Confidence 14899999999999999994433333323344578899999999999999999999
Q ss_pred HHHHHHHHH
Q 008385 287 LEKLTCMVE 295 (567)
Q Consensus 287 le~ln~~i~ 295 (567)
+..+..++.
T Consensus 794 ~~s~d~~~~ 802 (881)
T KOG0128|consen 794 VASVDVAGK 802 (881)
T ss_pred cccchhhhh
Confidence 988877644
No 93
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.41 E-value=3.2e-07 Score=93.40 Aligned_cols=83 Identities=19% Similarity=0.357 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
....||||+||.++++.+|+.+|.+||.|..+.++.|..+..++|||||.|.+.+++..++. ..-+.|+|+.+.|+.+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeecc
Confidence 46799999999999999999999999999999999999999999999999999999999998 48899999999999887
Q ss_pred hhHH
Q 008385 207 ATRE 210 (567)
Q Consensus 207 ~~~~ 210 (567)
+...
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7543
No 94
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.39 E-value=4.9e-07 Score=95.91 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=65.3
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHh-hCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeE
Q 008385 124 AEKPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQE 199 (567)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i---~gr~ 199 (567)
....++.|||.||-.-+|.-.|+.|+. .+|.|..+ +.| +.+..|||.|.+.+.|...+.+|||+.| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmD----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMD----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHH----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 355689999999999999999999999 56666666 334 3567999999999999999999999988 5778
Q ss_pred EEEEEchh
Q 008385 200 LMLKVDQA 207 (567)
Q Consensus 200 l~V~~a~~ 207 (567)
|.|.|...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 88877654
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2.3e-05 Score=82.68 Aligned_cols=162 Identities=18% Similarity=0.211 Sum_probs=103.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCcee-EEEEeecC-CCCCCcc---EEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYP-SNGTPKG---FGFCEFESAEGVLRALRLLNKFNIDGQE 199 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~-~~~i~~~~-~tg~~kg---~aFVef~~~~~A~~Ai~~Lng~~i~gr~ 199 (567)
..-.+.||||+||++++++.|...|..||.+. .|-.-... .---++| |.|+.|.+..++..-|... ..+...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~ 332 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGN 332 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccc
Confidence 34578999999999999999999999999753 33210110 1122456 9999999988876655432 123333
Q ss_pred EEEEEchhhHH----HHHhhhhhh----hhccccccccccccccCCCcccchhhhcCCCC--CCcccccCCCCCCCCCCC
Q 008385 200 LMLKVDQATRE----YLERYVDKK----TENTKKLKETQDAGAGKEDESVQSVEKNEPTK--SPENLKDNETGNKESHDP 269 (567)
Q Consensus 200 l~V~~a~~~~~----~~~~~~~~k----~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k--s~~~~k~~~~~~~~~g~~ 269 (567)
+.++++-.... .+-.|..-. ........+..++|||.|+--++-++|..+.. ..+++-++.+++.+-+-+
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYP 412 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYP 412 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCC
Confidence 33322211110 011111000 00223455666689999999999999887733 333444455556688899
Q ss_pred CceEEEEeCCHHHHHHHHHH
Q 008385 270 TNFGVVTEEDRKADQEALEK 289 (567)
Q Consensus 270 kGfgFV~f~~~e~a~kAle~ 289 (567)
+|-|=|+|.+..+-.+||.+
T Consensus 413 kGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 413 KGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCcceeeecccHHHHHHHhh
Confidence 99999999999999999874
No 96
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.29 E-value=3.9e-05 Score=77.66 Aligned_cols=162 Identities=19% Similarity=0.158 Sum_probs=114.7
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
..+++.+.|.+|.. .++-+.|..+|..||.|..|+++..+ .|-|.|++.+....++|+..||+..+-|.+|.|.
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 45688999999987 56667999999999999999998864 4899999999999999999999999999999998
Q ss_pred EchhhHH-------------HHHhhhhhhhh-------cc--ccccccccccccCCCcccchhhhcCC--CCCCc--ccc
Q 008385 204 VDQATRE-------------YLERYVDKKTE-------NT--KKLKETQDAGAGKEDESVQSVEKNEP--TKSPE--NLK 257 (567)
Q Consensus 204 ~a~~~~~-------------~~~~~~~~k~~-------~~--~~~~~~~~~~v~nl~~~~~e~~l~e~--~ks~~--~~k 257 (567)
++...-. .+..|...+.. .. .-..+++++-.-|.|..+|++.|-.+ .+.+. ..+
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 7654211 11122211110 00 11234566666788999999999877 22111 111
Q ss_pred cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 258 DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 258 ~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
.... .+ ....-|.++|++..+|..||..+|..--
T Consensus 439 vFp~---ks-erSssGllEfe~~s~Aveal~~~NH~pi 472 (494)
T KOG1456|consen 439 VFPL---KS-ERSSSGLLEFENKSDAVEALMKLNHYPI 472 (494)
T ss_pred eecc---cc-cccccceeeeehHHHHHHHHHHhccccc
Confidence 1111 11 1123678999999999999999988643
No 97
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.25 E-value=8.3e-07 Score=90.05 Aligned_cols=159 Identities=15% Similarity=0.079 Sum_probs=117.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng-~~i~gr~l~V~~ 204 (567)
...+++|||++...+.+.++..+|..+|.+..+.+........++||++|.|...+.+..||.. .+ ..+.+..+...+
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~-s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEE-SGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHh-hhccccccccccCcc
Confidence 3578999999999999999999999999988888877677899999999999999999999985 55 466666665554
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
........ ..+...........+.+|+++++.+++++|..+ .....+..+....+..+|..+|||||.|.+...+
T Consensus 165 ~~~~~~~~----~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 165 NTRRGLRP----KNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccc----cchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 44433111 111111112223333459999999999999955 4433344444556689999999999999999888
Q ss_pred HHHHHH
Q 008385 284 QEALEK 289 (567)
Q Consensus 284 ~kAle~ 289 (567)
..++..
T Consensus 241 ~~~~~~ 246 (285)
T KOG4210|consen 241 KLALND 246 (285)
T ss_pred HHHhhc
Confidence 887653
No 98
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=5.5e-07 Score=86.25 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=53.4
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+.+-|.||+.++++.+|.+|+. ...+.+.....+++||.++|||||+|.+.++|.+||..|||.
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~ 254 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGY 254 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCc
Confidence 34468999999999999999954 333444333446899999999999999999999999999986
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=1.2e-06 Score=92.87 Aligned_cols=72 Identities=22% Similarity=0.399 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
.....+|||-|||..|+.++|..+|+.||.|..|.. |-...|.+||+|.+.-+|..|++.|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445789999999999999999999999999999765 555679999999999999999999999999999887
No 100
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.22 E-value=7.5e-07 Score=81.50 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=49.0
Q ss_pred ccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++..+ .+.......+..+|+++|||||+|.+.++|..||..||+.
T Consensus 37 lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~ 99 (144)
T PLN03134 37 LFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGK 99 (144)
T ss_pred EEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 5999999999999999995421 1211112234678999999999999999999999998875
No 101
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.19 E-value=3e-05 Score=82.08 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=45.1
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||..|+..+--.+|+.| ++...++-....+|..+---++||||++.+.+.|.+||+.|+-.
T Consensus 408 lWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrT 470 (940)
T KOG4661|consen 408 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRT 470 (940)
T ss_pred eeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhh
Confidence 599999999888888888 55222211111234555566899999999999999999988754
No 102
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.18 E-value=3.4e-07 Score=87.33 Aligned_cols=74 Identities=15% Similarity=0.058 Sum_probs=57.3
Q ss_pred ccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHHhhc
Q 008385 226 LKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLKT 300 (567)
Q Consensus 226 ~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~~~~ 300 (567)
..+|+| |||+|+..+..+.|+.++. ...+....-..++.+|++||||||+|.|.++|.+|++..|-+|.-+...
T Consensus 10 T~~TKi-fVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 10 TTFTKI-FVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred ceEEEE-EEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 455665 9999999999999988744 2222222222348999999999999999999999999988888876444
No 103
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.13 E-value=8.6e-06 Score=89.09 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=4.3
Q ss_pred CCceEEEc
Q 008385 127 PQTKVYVG 134 (567)
Q Consensus 127 ~~~tlfVg 134 (567)
+....||+
T Consensus 640 s~~cFWvk 647 (1102)
T KOG1924|consen 640 SENCFWVK 647 (1102)
T ss_pred Cccceeee
Confidence 34556664
No 104
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.09 E-value=2.6e-05 Score=65.91 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=67.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhh--CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC----CeEEEE
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID----GQELML 202 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~--~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~----gr~l~V 202 (567)
+||-|.|||...|..+|.+++.. .|..--+.++.|..++-+.|||||.|.++..|..-...++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988875 356777888888889999999999999999999999999999885 455666
Q ss_pred EEch
Q 008385 203 KVDQ 206 (567)
Q Consensus 203 ~~a~ 206 (567)
.+|.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 6653
No 105
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.02 E-value=1.2e-06 Score=69.00 Aligned_cols=62 Identities=16% Similarity=0.130 Sum_probs=46.5
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+|||..+++.+|.+++...+.........+.++.++|||||.|.+.++|.+|++.|++.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 48999999999999998833111111011111377899999999999999999999999874
No 106
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.02 E-value=2.6e-05 Score=85.50 Aligned_cols=13 Identities=8% Similarity=0.010 Sum_probs=5.6
Q ss_pred cccccchhcccCC
Q 008385 35 CSLALFKVICSAG 47 (567)
Q Consensus 35 ~~~a~~~~~~~~g 47 (567)
++.++||+.+.+|
T Consensus 525 ~~iP~PP~~pp~g 537 (1102)
T KOG1924|consen 525 GGIPPPPPLPPTG 537 (1102)
T ss_pred CCCCCCCCCCCCC
Confidence 4444444444333
No 107
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.97 E-value=4.8e-05 Score=82.42 Aligned_cols=159 Identities=8% Similarity=-0.179 Sum_probs=101.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..+.+-+.+++++....+++.||... .|-++.|..+...+...|-++|.|....++..|+.. |...+-.+.+.|.-..
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCC
Confidence 34555567999999999999998643 244555555544555579999999999999999874 6665556666553111
Q ss_pred h--------hHHHHHhhhhhhh-------------hcc---ccccccccccccCCCcccchhhhcCCCC-CCcccccCCC
Q 008385 207 A--------TREYLERYVDKKT-------------ENT---KKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNET 261 (567)
Q Consensus 207 ~--------~~~~~~~~~~~k~-------------~~~---~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~ 261 (567)
. .......-..... ... ..-.-++++||..|+..+++..+-.+++ +..+.+-+..
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 0 0000000000000 000 0122355689999999999998877744 2222222444
Q ss_pred CCCCCCCCCceEEEEeCCHHHHHHHH
Q 008385 262 GNKESHDPTNFGVVTEEDRKADQEAL 287 (567)
Q Consensus 262 ~~~~~g~~kGfgFV~f~~~e~a~kAl 287 (567)
...-+++..+-|||.|...+++.+|+
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~ 493 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTAS 493 (944)
T ss_pred ccCCcccccchhhheeccccccchhh
Confidence 55778899999999999977776664
No 108
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.94 E-value=2.8e-05 Score=62.82 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=49.4
Q ss_pred ceEEEcCCCCCCcHHH----HHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 129 TKVYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~----L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
+.|||.|||.+.+... |+.|+..|| .|.+|. .+.|+|-|.+.+.|.+|..-|+|-.+.|..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5799999999988774 567777898 566652 2789999999999999999999999999999998
Q ss_pred Echhh
Q 008385 204 VDQAT 208 (567)
Q Consensus 204 ~a~~~ 208 (567)
|....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 87544
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.87 E-value=1.4e-05 Score=81.05 Aligned_cols=163 Identities=15% Similarity=0.074 Sum_probs=109.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhh----CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKV----CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~----~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
.-.|-+.+||+++++.++..||.. -|.+..|.+++.+ +|+..|-|||.|...++|..||.. |...|+-+-|.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 345677899999999999999963 2355677777764 899999999999999999999986 7777766666554
Q ss_pred EchhhH--HHHHhhhhhhhhc--------------cccccccccccccCCCcccchhhhcCCCC----CCcccccCCCCC
Q 008385 204 VDQATR--EYLERYVDKKTEN--------------TKKLKETQDAGAGKEDESVQSVEKNEPTK----SPENLKDNETGN 263 (567)
Q Consensus 204 ~a~~~~--~~~~~~~~~k~~~--------------~~~~~~~~~~~v~nl~~~~~e~~l~e~~k----s~~~~k~~~~~~ 263 (567)
.+.+.. ..+......-... ......+.++-...|+++++-++|-.|.+ ++..- -..-..
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~-gVHmv~ 317 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQ-GVHMVL 317 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccc-eeEEEE
Confidence 332221 1122222100000 00122345567788999999998877733 21110 000112
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 264 ~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+..|+..|-|||.|.+.+.|..|..+.++.
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 667999999999999999998887665543
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=81.28 Aligned_cols=83 Identities=14% Similarity=0.235 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
.....+|||.+||..++..+|..+|.+||.|. .|.|.+++.|+.++|-|.|+|.+...|..||..+++..|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34578999999999999999999999999875 4677888899999999999999999999999999999999
Q ss_pred CeEEEEEEchh
Q 008385 197 GQELMLKVDQA 207 (567)
Q Consensus 197 gr~l~V~~a~~ 207 (567)
|..|+|.++..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99988866544
No 111
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.85 E-value=1.4e-05 Score=75.62 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=56.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
..+.||||.||..+|++++|+.+|+.|....-++|-. ....+.|||+|++.+.|..|+..|.|..|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~----~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA----RGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec----CCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 3468999999999999999999999998777666632 22346899999999999999999999876
No 112
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=97.67 E-value=1.7e-05 Score=78.20 Aligned_cols=66 Identities=6% Similarity=0.003 Sum_probs=49.9
Q ss_pred cccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
-.++||+-|+..++++.|+.. .+...|.+.....+..||+++|||||.|++.-+...|.+...+++
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 334699999999999999866 332222222222347899999999999999999999999888763
No 113
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.64 E-value=2.4e-05 Score=61.84 Aligned_cols=60 Identities=17% Similarity=0.036 Sum_probs=43.5
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
+||+|||..+++++|.++....+ +.......+.. |.++|||||+|.+.++|..|+..+++
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~ 61 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNG 61 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCC
Confidence 48999999999999999955222 22211112233 88999999999999999999998874
No 114
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.63 E-value=5.9e-05 Score=75.62 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
.....+|||||-|.+|+++|.+.+...| .|..+++.-++.+|.++|||+|...+.......+..|....|+|+.-.|-
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999999888 67888999999999999999999999999999999999999999876664
No 115
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.59 E-value=3.3e-05 Score=78.49 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=73.3
Q ss_pred CCceEE-EcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVY-VGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlf-VgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++| |+||++.++.++|+.+|..||.|..+++..++.+|.++|||||.|.....+..++.. +...|.|+.+.|.+.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445555 999999999999999999999999999999999999999999999999999999986 888999999998766
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 553
No 116
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=97.52 E-value=2.7e-05 Score=77.71 Aligned_cols=64 Identities=19% Similarity=0.089 Sum_probs=47.7
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER 297 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~ 297 (567)
++|.||++..-+-+|+.+ ++...+..+ +.... .--+||||||+|++.++|++|.++|++.+.+-
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG~VldV-EIIfN-ERGSKGFGFVTmen~~dadRARa~LHgt~VEG 163 (376)
T KOG0125|consen 99 LHVSNIPFRFRDPDLRAMFEKFGKVLDV-EIIFN-ERGSKGFGFVTMENPADADRARAELHGTVVEG 163 (376)
T ss_pred eEeecCCccccCccHHHHHHhhCceeeE-EEEec-cCCCCccceEEecChhhHHHHHHHhhcceeec
Confidence 599999999999999888 442222211 11112 23489999999999999999999999976653
No 117
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.52 E-value=9.1e-05 Score=69.74 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=49.4
Q ss_pred cccccCCCcccchhhhcCC-CCC-CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEP-TKS-PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~-~ks-~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
+.|+..++.-+.+.++..+ .+. ..+.......|..||.++|||||+|++.+.|.-|-+.||+.|-
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl 117 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLL 117 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhh
Confidence 3578888888777777666 332 2233333336789999999999999999999999999999754
No 118
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.00034 Score=74.53 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=64.5
Q ss_pred CCCceEEEcCCCCCCcH------HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-Ce
Q 008385 126 KPQTKVYVGKIAPTADS------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQ 198 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te------~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr 198 (567)
.-...|+|-|+|..-.. .-|..+|+++|+|+.+.++.+.. |+++||.|++|.+..+|..|+..|||+.|+ .+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 45678999999863322 25778999999999999998864 559999999999999999999999999997 56
Q ss_pred EEEEEE
Q 008385 199 ELMLKV 204 (567)
Q Consensus 199 ~l~V~~ 204 (567)
.+.|..
T Consensus 135 tf~v~~ 140 (698)
T KOG2314|consen 135 TFFVRL 140 (698)
T ss_pred eEEeeh
Confidence 677763
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.49 E-value=0.0015 Score=71.12 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=66.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+.|-|.|+|++++-++|.+||..|-.+-.--+++....|.+.|-|.|.|++.+.|..|...|++..|..+.|.|.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34788999999999999999999998665444444447899999999999999999999999999999999998753
No 120
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.46 E-value=1.2e-05 Score=73.96 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=49.7
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+|||+|++.+|+.+|--. ++...++......+..||+++||||+.|+|..+..-|+..|||+
T Consensus 38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGi 100 (219)
T KOG0126|consen 38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGI 100 (219)
T ss_pred EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCc
Confidence 699999999999987655 44333333222245899999999999999999999999999997
No 121
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.45 E-value=0.00066 Score=65.02 Aligned_cols=78 Identities=17% Similarity=0.300 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEE
Q 008385 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELML 202 (567)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr~l~V 202 (567)
...+..+||+.|||..++.+.|..+|.+|+....+.++... .+.|||+|.+...|..|...|.|..|- ...+.|
T Consensus 142 ~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 142 MAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEe
Confidence 35568999999999999999999999999999999987653 489999999999999999999999987 777777
Q ss_pred EEch
Q 008385 203 KVDQ 206 (567)
Q Consensus 203 ~~a~ 206 (567)
.++.
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 6653
No 122
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.41 E-value=7.3e-05 Score=73.87 Aligned_cols=60 Identities=13% Similarity=0.107 Sum_probs=42.8
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||++.+++.+|++|+..++.+..... ...+..+|||||+|.+.++|..||. ||+.
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G~I~~V~I--~~d~~~~GfAFVtF~d~eaAe~All-LnG~ 65 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSGDIEYVEM--QSENERSQIAYVTFKDPQGAETALL-LSGA 65 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eecCCCCCEEEEEeCcHHHHHHHHH-hcCC
Confidence 3599999999999999999552221111111 1112357999999999999999995 6653
No 123
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.36 E-value=0.00012 Score=71.07 Aligned_cols=73 Identities=26% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCC--------CCCccE----EEEEeCCHHHHHHHHHHhCCce
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN--------GTPKGF----GFCEFESAEGVLRALRLLNKFN 194 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t--------g~~kg~----aFVef~~~~~A~~Ai~~Lng~~ 194 (567)
....||+++||+.+...-|++||+.||.|-.|.|.....+ |.+.++ |+|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988765444 333333 7899999999999999999999
Q ss_pred eCCeE
Q 008385 195 IDGQE 199 (567)
Q Consensus 195 i~gr~ 199 (567)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 124
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.36 E-value=5.7e-05 Score=84.27 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=104.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..+.|||+|||...+++.+|+..|..||.|..|.|-+.+ -+.-..||||.|.+...+-.|+..|.+..|..-.+.+.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999987653 3455579999999999999999999999887666666544
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcC-CCC--CCcccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNE-PTK--SPENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e-~~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
+. ....+.-++++.+.....-..|.. |.. .+.++. -..| .-|+||.|++...
T Consensus 449 ~~-----------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Id------y~hg--q~yayi~yes~~~ 503 (975)
T KOG0112|consen 449 QP-----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIID------YRHG--QPYAYIQYESPPA 503 (975)
T ss_pred cc-----------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeee------cccC--CcceeeecccCcc
Confidence 32 112223358888877665555433 322 122211 1122 3399999999999
Q ss_pred HHHHHHHHHHH
Q 008385 283 DQEALEKLTCM 293 (567)
Q Consensus 283 a~kAle~ln~~ 293 (567)
+..|+..|.+.
T Consensus 504 aq~a~~~~rga 514 (975)
T KOG0112|consen 504 AQAATHDMRGA 514 (975)
T ss_pred chhhHHHHhcC
Confidence 99999988875
No 125
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=97.33 E-value=0.00014 Score=77.51 Aligned_cols=62 Identities=13% Similarity=0.125 Sum_probs=49.9
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+|||||+++++++.|..++. .+...+ ...+..+|+++|||||+|.+.+.+..|+..||+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~--~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~ 83 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFR--LVYDRETGKPKGFGFCEFTDEETAERAIRNLNGA 83 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceee--ecccccCCCcCceeeEecCchhhHHHHHHhcCCc
Confidence 3469999999999999998833 222222 1234789999999999999999999999999975
No 126
>PLN03213 repressor of silencing 3; Provisional
Probab=97.32 E-value=9.6e-05 Score=77.25 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=44.6
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCH--HHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDR--KADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~--e~a~kAle~ln~~ 293 (567)
+|||||++.+++++|..++..++.+...... ..+| +|||||+|.+. .++.+||..||+.
T Consensus 13 IYVGNLSydVTEDDLravFSeFGsVkdVEIp-RETG--RGFAFVEMssdddaEeeKAISaLNGA 73 (759)
T PLN03213 13 LHVGGLGESVGRDDLLKIFSPMGTVDAVEFV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGC 73 (759)
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe-cccC--CceEEEEecCCcHHHHHHHHHHhcCC
Confidence 5999999999999999885522222211111 4567 99999999987 7899999999974
No 127
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=97.30 E-value=0.00013 Score=63.56 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=54.2
Q ss_pred cccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
+..+||+||++.++++.|-+| ++...+.+.+.-.+..+..+=||+||+|-+.++|+.|+.-||+...
T Consensus 36 S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrL 103 (153)
T KOG0121|consen 36 SCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRL 103 (153)
T ss_pred cceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcc
Confidence 345699999999999999999 5543344444455677788899999999999999999999998643
No 128
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.24 E-value=0.0001 Score=67.64 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=42.8
Q ss_pred ccccCCCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||+..++..+|+.. .+ ++-+.. .+-|||||+|++..+|+.|+..|++..
T Consensus 13 VYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr----------nPPGfAFVEFed~RDA~DAvr~LDG~~ 71 (195)
T KOG0107|consen 13 VYVGNLGSRATKRELERAFSKYGPLRSVWVAR----------NPPGFAFVEFEDPRDAEDAVRYLDGKD 71 (195)
T ss_pred EEeccCCCCcchHHHHHHHHhcCcceeEEEee----------cCCCceEEeccCcccHHHHHhhcCCcc
Confidence 499999999999999876 33 222222 467999999999999999999999853
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.23 E-value=0.00022 Score=68.77 Aligned_cols=70 Identities=19% Similarity=0.330 Sum_probs=62.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
....+.|+|-||+..+...+|..+|..+|.+....+ ..+++||.|....+|..||..|+|..|.|+.|.|
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 445788999999999999999999999999855443 2479999999999999999999999999999998
No 130
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=97.23 E-value=0.00012 Score=68.76 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=53.5
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER 297 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~ 297 (567)
+.|-||.+-++.++|.-+++ ...++.+....+.-|+.++|||||-|-+..+|+.|++.|.+.+.+-
T Consensus 16 LkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 16 LKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred EEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc
Confidence 57889999999999988744 3334444444557899999999999999999999999999987654
No 131
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.17 E-value=0.00067 Score=58.49 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=44.6
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC-----CceeCCeEEEEE
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN-----KFNIDGQELMLK 203 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln-----g~~i~gr~l~V~ 203 (567)
+.|+|.+++..++-++|+.+|+.||.|..|.+... -.-|||-|.+.+.|..|+..+. +..|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999999988654 2489999999999999997663 346667766665
Q ss_pred Ec
Q 008385 204 VD 205 (567)
Q Consensus 204 ~a 205 (567)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 132
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0002 Score=67.76 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=49.8
Q ss_pred cccccccCCCcccchhhhcCCC-CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPT-KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~-ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+++||+.|...+++..|...+ ...-+.......+.++++++|||||+|+..++|..||..||+.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 3457999999999999987663 2111222223345789999999999999999999999999874
No 133
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=97.15 E-value=0.00022 Score=62.63 Aligned_cols=65 Identities=11% Similarity=-0.027 Sum_probs=50.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
-|+||.+++..++++++.+.+...+ +...-...+..+|..|||+.|+|++.+.|..|++.+|+.-
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ 138 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAE 138 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchh
Confidence 3579999999999999987744111 1111122447899999999999999999999999999753
No 134
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.12 E-value=0.0011 Score=66.55 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=62.3
Q ss_pred CceEEEcCCCCCCcHHH----H--HHHHhhCCceeEEEEeecC-CCCCCcc-EE-EEEeCCHHHHHHHHHHhCCceeCCe
Q 008385 128 QTKVYVGKIAPTADSDF----V--LSVLKVCGTVKSWKRAQYP-SNGTPKG-FG-FCEFESAEGVLRALRLLNKFNIDGQ 198 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~----L--~~~F~~~G~v~~~~i~~~~-~tg~~kg-~a-FVef~~~~~A~~Ai~~Lng~~i~gr 198 (567)
.+-+||-+|++.+-.++ | .++|.+||.|..|.|-... ......+ +| ||+|.+.++|.+||..++|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 56789999999877765 2 4899999999888765432 1112223 32 9999999999999999999999999
Q ss_pred EEEEEEchh
Q 008385 199 ELMLKVDQA 207 (567)
Q Consensus 199 ~l~V~~a~~ 207 (567)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999877654
No 135
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.001 Score=70.65 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=60.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHh-hCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~ 189 (567)
.+.+|||||+||.-++..+|..+|. -||.|..+.|-+|+.-+.++|-|-|+|.+..+..+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4578999999999999999999999 799999999999988999999999999999999999963
No 136
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0004 Score=70.05 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=55.4
Q ss_pred cccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 225 KLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 225 ~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
...+.|++||..|.+.+++++|.-++. +|.++++ ..+|.+-.||||+|++.+++++|.-+|.++|-
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD-----~ktgdsLqyaFiEFen~escE~AyFKMdNvLI 306 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRD-----RKTGDSLQYAFIEFENKESCEQAYFKMDNVLI 306 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEec-----ccccchhheeeeeecchhhHHHHHhhhcceee
Confidence 456778899999999999999987733 5555553 78899999999999999999999999988654
No 137
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.08 E-value=0.00039 Score=58.35 Aligned_cols=64 Identities=13% Similarity=0.034 Sum_probs=50.0
Q ss_pred cccccccccCCCcccchhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~-~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
..+.++||.|||+.+|.++.-++ ++ .+.-++.+ .+..-+|-|||-|++..+|.+|++.|++.-.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG-----~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIG-----NTKETRGTAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEec-----CccCcCceEEEEehHhhhHHHHHHHhccccc
Confidence 34567899999999999999888 55 23333332 2345589999999999999999999998644
No 138
>smart00360 RRM RNA recognition motif.
Probab=97.06 E-value=0.00044 Score=53.27 Aligned_cols=59 Identities=20% Similarity=0.155 Sum_probs=42.1
Q ss_pred ccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 234 AGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 234 v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
|+||+..+++++|..++...+ +....-..+..++.++|||||+|.+.++|..|+..+++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~ 60 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNG 60 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCC
Confidence 578899999999888843111 11111111234789999999999999999999988874
No 139
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.05 E-value=0.00029 Score=68.67 Aligned_cols=67 Identities=12% Similarity=-0.038 Sum_probs=45.8
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHHhh
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERLK 299 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~~~ 299 (567)
.+||+||++.+++.+|++|+..++.+..... ...+..+|||||+|.+.+++..||..-+..|.....
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I--~~D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I 73 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEI--IRSGEYACTAYVTFKDAYALETAVLLSGATIVDQRV 73 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEE--ecCCCcceEEEEEECCHHHHHHHHhcCCCeeCCceE
Confidence 3599999999999999999552332211111 122556789999999999999999533334444433
No 140
>smart00362 RRM_2 RNA recognition motif.
Probab=97.02 E-value=0.00046 Score=53.43 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=42.8
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
++|+||+..++..+|..+....+ +...... ... +.++|||||+|.+.++|..|+..+++
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~-~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIP-KDT-GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEe-cCC-CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 48999999999999988833111 1110001 112 77899999999999999999998875
No 141
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.01 E-value=0.00041 Score=68.76 Aligned_cols=63 Identities=17% Similarity=0.146 Sum_probs=49.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||+..+++++|.++++.++ +.......+..+|.++|||||.|.+.++|..|++.+++
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~ 179 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNG 179 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCC
Confidence 4569999999999999999955221 21111112247899999999999999999999999994
No 142
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.99 E-value=0.0041 Score=63.56 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=108.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
...|-..+||+..++.+|-.||.-.--.....++.....|.-.|+|.|.|.+.+.-..|++- |...++++.|.|-.+..
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKATG 138 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccCc
Confidence 44555679999999999999998543222222222224677789999999999999999985 88888888888754332
Q ss_pred hHHHHHhhhhhhhhccccc-cc-cccccccCCCcccchhhhcCCC-CCC--cccccCCC-CCCCCCCCCceEEEEeCCHH
Q 008385 208 TREYLERYVDKKTENTKKL-KE-TQDAGAGKEDESVQSVEKNEPT-KSP--ENLKDNET-GNKESHDPTNFGVVTEEDRK 281 (567)
Q Consensus 208 ~~~~~~~~~~~k~~~~~~~-~~-~~~~~v~nl~~~~~e~~l~e~~-ks~--~~~k~~~~-~~~~~g~~kGfgFV~f~~~e 281 (567)
. .++.-..-.......-. +. .-++-...|+++++..++.+|+ ..| ....++.. ....+|+..|-|||.|...+
T Consensus 139 e-~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee 217 (508)
T KOG1365|consen 139 E-EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEE 217 (508)
T ss_pred h-hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHH
Confidence 1 11100000000000000 11 1234667899999999999994 322 21222222 23568999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 008385 282 ADQEALEKLTCMVEER 297 (567)
Q Consensus 282 ~a~kAle~ln~~i~e~ 297 (567)
+|..||.+..+.|-.+
T Consensus 218 ~aq~aL~khrq~iGqR 233 (508)
T KOG1365|consen 218 DAQFALRKHRQNIGQR 233 (508)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 9999998887765543
No 143
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.98 E-value=0.004 Score=63.48 Aligned_cols=143 Identities=14% Similarity=0.085 Sum_probs=101.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH--hCCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL--LNKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~--Lng~~i~gr~l~V~~ 204 (567)
++-.|.|.+|-..+++.+|.+.++.||.|..+.++.. +..+.|+|++.+.|..|+.. -+...|.|+.-.+++
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~------~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~Ny 103 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH------KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNY 103 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc------cceeeeeeccccchhhheehhccCcccccCchhhccc
Confidence 4567999999999999999999999999999987665 36899999999999999853 255677888877776
Q ss_pred chhhHHHHHhhhhhhhhcccccccccc--ccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEE
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQD--AGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVT 276 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~--~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~ 276 (567)
+.+... .+.. ........+ +-|-|--+.+|-+.|-.+.. -+++.+ +.---|.|+
T Consensus 104 Stsq~i------~R~g--~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk----------kngVQAmVE 165 (494)
T KOG1456|consen 104 STSQCI------ERPG--DESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK----------KNGVQAMVE 165 (494)
T ss_pred chhhhh------ccCC--CCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe----------ccceeeEEe
Confidence 644211 0000 112222333 34556667778777777732 222332 112368999
Q ss_pred eCCHHHHHHHHHHHHHH
Q 008385 277 EEDRKADQEALEKLTCM 293 (567)
Q Consensus 277 f~~~e~a~kAle~ln~~ 293 (567)
|++.+.|.+|...||+.
T Consensus 166 Fdsv~~AqrAk~alNGA 182 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGA 182 (494)
T ss_pred echhHHHHHHHhhcccc
Confidence 99999999999999985
No 144
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.98 E-value=0.00069 Score=70.13 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeec---CC--CCCC--------ccEEEEEeCCHHH
Q 008385 116 VPLPTVTPAEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY---PS--NGTP--------KGFGFCEFESAEG 182 (567)
Q Consensus 116 ~~~~~~~~~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~---~~--tg~~--------kg~aFVef~~~~~ 182 (567)
++++......-+.++|.+.|||.+-.-+-|..||+.||.|.+|+|+.. +. .|.+ +-||||+|...+.
T Consensus 219 sPlp~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~ 298 (484)
T KOG1855|consen 219 SPLPEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEA 298 (484)
T ss_pred CCCCCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHH
Confidence 334555555568999999999999888999999999999999999875 32 2222 4579999999999
Q ss_pred HHHHHHHhCCcee
Q 008385 183 VLRALRLLNKFNI 195 (567)
Q Consensus 183 A~~Ai~~Lng~~i 195 (567)
|.+|...|+....
T Consensus 299 A~KA~e~~~~e~~ 311 (484)
T KOG1855|consen 299 ARKARELLNPEQN 311 (484)
T ss_pred HHHHHHhhchhhh
Confidence 9999998765544
No 145
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.027 Score=62.48 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhhcCCCC
Q 008385 285 EALEKLTCMVEERLKTNPLP 304 (567)
Q Consensus 285 kAle~ln~~i~e~~~~~~~~ 304 (567)
-|+..+.-.+.-......+|
T Consensus 253 lam~liema~sGq~lP~tlP 272 (1118)
T KOG1029|consen 253 LAMHLIEMAKSGQPLPKTLP 272 (1118)
T ss_pred HHHHHHHHHhcCCCCCCCCC
Confidence 33333333333334444443
No 146
>smart00361 RRM_1 RNA recognition motif.
Probab=96.85 E-value=0.0011 Score=52.53 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=25.7
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 267 HDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 267 g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|.++|||||+|.+.++|.+|+..||+.
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~ 60 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGR 60 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 889999999999999999999999985
No 147
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.73 E-value=0.033 Score=56.39 Aligned_cols=30 Identities=7% Similarity=-0.143 Sum_probs=21.0
Q ss_pred EEEcCCCCCCcHHHHHHHHhhCCceeEEEE
Q 008385 131 VYVGKIAPTADSDFVLSVLKVCGTVKSWKR 160 (567)
Q Consensus 131 lfVgnLp~~~te~~L~~~F~~~G~v~~~~i 160 (567)
+.|+--.+.+++.++.+++..--.|.+..|
T Consensus 348 r~~~p~~~plSeAEFEdiM~RNraiSSSAI 377 (498)
T KOG4849|consen 348 RHVNPQMFPLSEAEFEDIMTRNRAISSSAI 377 (498)
T ss_pred ccCCCCCccchHHHHHHHHhhcchhhHHHH
Confidence 445555566888889888887777766544
No 148
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.73 E-value=0.0072 Score=54.61 Aligned_cols=70 Identities=20% Similarity=0.314 Sum_probs=53.1
Q ss_pred CCceEEEcCCC------CCCcHH---HHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008385 127 PQTKVYVGKIA------PTADSD---FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (567)
Q Consensus 127 ~~~tlfVgnLp------~~~te~---~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g 197 (567)
+..||.|.-+. ..+.+. .|...|..||.|.-++++-+ .-+|+|.+-.+|.+|+. |+|..|+|
T Consensus 26 pDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g 96 (146)
T PF08952_consen 26 PDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNG 96 (146)
T ss_dssp TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETT
T ss_pred CCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECC
Confidence 45677776555 133332 67788899999998888764 78999999999999999 79999999
Q ss_pred eEEEEEEc
Q 008385 198 QELMLKVD 205 (567)
Q Consensus 198 r~l~V~~a 205 (567)
+.|.|..-
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99999753
No 149
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.61 E-value=0.005 Score=65.11 Aligned_cols=77 Identities=18% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~-~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
....|=+.+||+.||+.+|.+||+..-.|.. +.++.+ ..+++.|-|||.|++.+.|+.||.. |...|+-+-|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3567888999999999999999997654444 555555 3678999999999999999999985 888888888888643
No 150
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.57 E-value=0.0011 Score=68.29 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=92.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc-eeCCeEEEEEEch
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF-NIDGQELMLKVDQ 206 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~-~i~gr~l~V~~a~ 206 (567)
+.||+|||.+.++..+|..+|...-...+- .++. -||+||.+.+...|.+|+..|+|. .+.|..+.|..+-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 469999999999999999999864322222 2222 289999999999999999999985 6789999987665
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
..+..... .-+.|++...-++-+.-| +..+.+.. .+..+.. .-.-.--|+|...+.+..
T Consensus 75 ~kkqrsrk-----------------~Qirnippql~wevld~Ll~qyg~ve~-~eqvnt~--~etavvnvty~~~~~~~~ 134 (584)
T KOG2193|consen 75 PKKQRSRK-----------------IQIRNIPPQLQWEVLDSLLAQYGTVEN-CEQVNTD--SETAVVNVTYSAQQQHRQ 134 (584)
T ss_pred hHHHHhhh-----------------hhHhcCCHHHHHHHHHHHHhccCCHhH-hhhhccc--hHHHHHHHHHHHHHHHHH
Confidence 54322111 256677777777666655 33111000 0000000 001122367889999999
Q ss_pred HHHHHHHHHHHH
Q 008385 286 ALEKLTCMVEER 297 (567)
Q Consensus 286 Ale~ln~~i~e~ 297 (567)
||.++|+.--+.
T Consensus 135 ai~kl~g~Q~en 146 (584)
T KOG2193|consen 135 AIHKLNGPQLEN 146 (584)
T ss_pred HHHhhcchHhhh
Confidence 999999864443
No 151
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.54 E-value=0.0048 Score=63.66 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-ELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr-~l~V~~ 204 (567)
+++.+|...|||.++++++|+.+|..-|..+..... -++.+-++++.|.+.+.|..|+..||.+.+++. .|+|.|
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 467799999999999999999999999976555432 345567999999999999999999999999855 899998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 865
No 152
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.48 E-value=0.0073 Score=61.18 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=63.4
Q ss_pred CCCceEEEcCCCC----CCcH-------HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 008385 126 KPQTKVYVGKIAP----TADS-------DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (567)
Q Consensus 126 ~~~~tlfVgnLp~----~~te-------~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~ 194 (567)
...+||.|.||-. ..+. ++|.+-..+||.|.+|.|.- ..+.|.+-|.|.+.+.|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 4568999999843 3332 35566688999999998752 3567999999999999999999999999
Q ss_pred eCCeEEEEEEchhh
Q 008385 195 IDGQELMLKVDQAT 208 (567)
Q Consensus 195 i~gr~l~V~~a~~~ 208 (567)
|+|+.|........
T Consensus 339 fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 339 FDGRQLTASIWDGK 352 (382)
T ss_pred ecceEEEEEEeCCc
Confidence 99999998765543
No 153
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.39 E-value=0.02 Score=48.77 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=51.7
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-E
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-E 199 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-------~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr-~ 199 (567)
.+.|.|-+.|+. ....|...|++||.|+...-+... .......+-.|.|.+..+|.+||.. ||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 455777788877 457888899999999887511100 0012235889999999999999995 99999885 4
Q ss_pred EEEEEchh
Q 008385 200 LMLKVDQA 207 (567)
Q Consensus 200 l~V~~a~~ 207 (567)
+-|.+.++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 45666644
No 154
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.35 E-value=0.0023 Score=49.65 Aligned_cols=62 Identities=18% Similarity=0.088 Sum_probs=43.8
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
++|++|+..++++++..+....+ +.. ........+.++|+|||.|.+.++|..|+..+++..
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~-~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~ 64 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVES-VRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKE 64 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEE-EEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCe
Confidence 48899999999999888843111 111 001112333678999999999999999999888763
No 155
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.34 E-value=0.0033 Score=67.57 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=50.8
Q ss_pred cccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 225 KLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 225 ~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+|+++|.||---+|.-.|++| +..++++.+ ....+.|..+||.|.+.+.|...+.+|+|+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee-----~WmDkIKShCyV~yss~eEA~atr~AlhnV 504 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEE-----FWMDKIKSHCYVSYSSVEEAAATREALHNV 504 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHH-----HHHHHhhcceeEecccHHHHHHHHHHHhcc
Confidence 3456788999999999999999999 655554332 133456778999999999999999999985
No 156
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.33 E-value=0.0084 Score=44.88 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=41.4
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHH
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRAL 187 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai 187 (567)
+.|-|.+.+....+. +..+|..||.|..+.+.. ...+.||.|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 467788888776644 555888999999988852 2359999999999999985
No 157
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.32 E-value=0.02 Score=53.26 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=61.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELML 202 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~--gr~l~V 202 (567)
.+...|.|.+||++.+..+|+.++...|.|....+..| |+|.|+|...++..-||..|+.+.+. |-...+
T Consensus 113 rSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yi 184 (241)
T KOG0105|consen 113 RSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYI 184 (241)
T ss_pred ccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEeeE
Confidence 34678999999999999999999999999999999888 79999999999999999999887663 444333
No 158
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.22 E-value=0.0017 Score=72.56 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=71.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
...|||.|+|+..|.+.|+.+|+.+|.++++.+++.+ .|+++|.+||.|.+..++..++...++..+.-..+.|.++++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999988884 899999999999999999999988888888777777766555
No 159
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.48 E-value=0.04 Score=54.69 Aligned_cols=63 Identities=21% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHhhCCceeEEEEeecCCCCCCc-cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 144 FVLSVLKVCGTVKSWKRAQYPSNGTPK-GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 144 ~L~~~F~~~G~v~~~~i~~~~~tg~~k-g~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+++.-+.+||+|..|.|.-.+...... ---||+|...++|.+|+--|||..|+|+.+...|-+
T Consensus 302 e~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 302 ETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 677888999999999887765333322 236999999999999999999999999998876643
No 160
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=95.37 E-value=0.057 Score=60.21 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=9.9
Q ss_pred ceEEEcCCCCCCcH----HHHHHHHhh
Q 008385 129 TKVYVGKIAPTADS----DFVLSVLKV 151 (567)
Q Consensus 129 ~tlfVgnLp~~~te----~~L~~~F~~ 151 (567)
.|+|---+.+.+.+ +.+.+.|.-
T Consensus 386 ~tvf~~~~De~Il~~lD~~~~ee~Fk~ 412 (830)
T KOG1923|consen 386 GTVFHELNDEKILEALDFSRFEEQFKI 412 (830)
T ss_pred cchhhhhhHHHHHHhhhHHHHHHHHHh
Confidence 35554433333333 244455543
No 161
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.27 E-value=0.04 Score=62.33 Aligned_cols=79 Identities=13% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEE
Q 008385 124 AEKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELM 201 (567)
Q Consensus 124 ~~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~ 201 (567)
.....+.+|||+|..++....|...|..||.|..|.+-.. .-|+||.|.+...++.|+..|-|+.|+| +.|.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4556889999999999999999999999999998776332 3599999999999999999999999985 6788
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.|+...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 8887654
No 162
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.58 E-value=0.038 Score=54.01 Aligned_cols=61 Identities=20% Similarity=0.307 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L 190 (567)
..|||.||+..++.+.|...|+.||.|....++.| ..+++.+-++|.|.....|..|+..+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHh
Confidence 78999999999999999999999999998877777 57899999999999999999999866
No 163
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.27 E-value=0.16 Score=57.18 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=63.1
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--CCeEEEEEEch
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--DGQELMLKVDQ 206 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i--~gr~l~V~~a~ 206 (567)
.+.++.|.+-..+-..|..+|+.||.|.++...++ ...|.|+|.+.+.|..|+.+|+|..+ .|-+.+|.++.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~------~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD------LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc------ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 35567777888899999999999999999887766 35899999999999999999999876 47788888776
Q ss_pred hhH
Q 008385 207 ATR 209 (567)
Q Consensus 207 ~~~ 209 (567)
...
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 643
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=94.08 E-value=0.028 Score=55.00 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=50.8
Q ss_pred HHHHHHh-hCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 144 FVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 144 ~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
+|...|+ +||.|..+.|..+ ..-...|=.||.|...++|.+|+..||+-.|.|++|...++.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 3444444 9999999977665 2445568899999999999999999999999999999876543
No 165
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.06 E-value=0.019 Score=58.28 Aligned_cols=79 Identities=20% Similarity=0.291 Sum_probs=60.9
Q ss_pred CceEEEcCCCCCCcHHHHH---HHHhhCCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 128 QTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~---~~F~~~G~v~~~~i~~~~~----tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
.+-+||-+|+..+..+.+. ..|.+||.|..|.+..++. .|.+ +-+||+|...++|..||...+|+.++|+.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~-~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGT-CSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCC-CcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 4568888999877665443 7899999999998877652 1222 238999999999999999999999999997
Q ss_pred EEEEchh
Q 008385 201 MLKVDQA 207 (567)
Q Consensus 201 ~V~~a~~ 207 (567)
+..+...
T Consensus 156 ka~~gtt 162 (327)
T KOG2068|consen 156 KASLGTT 162 (327)
T ss_pred HHhhCCC
Confidence 6655433
No 166
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=93.94 E-value=0.04 Score=54.34 Aligned_cols=62 Identities=18% Similarity=0.078 Sum_probs=49.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k-~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+|+.+.++.+.+...+++|.... .....+...|.++||+||.|.+.+.+..|+. |++.
T Consensus 103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs 165 (231)
T KOG4209|consen 103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGS 165 (231)
T ss_pred eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCc
Confidence 359999999999998777777666432 3333457778899999999999999999999 6654
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.67 E-value=0.35 Score=43.38 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=56.6
Q ss_pred CCCCceEEEcCCCCCCcH----HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 125 EKPQTKVYVGKIAPTADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
+.+..||.|.-|..++.. ..+...++.||+|.+|.+.- +--|.|.|.+..+|-.|+.+++. ...|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 556788989877666544 35566778999999998743 24799999999999999998776 5667777
Q ss_pred EEEEch
Q 008385 201 MLKVDQ 206 (567)
Q Consensus 201 ~V~~a~ 206 (567)
.+.|-+
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 776644
No 168
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.41 E-value=0.25 Score=40.29 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK 192 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng 192 (567)
...|| .+|..+...+|..+|+.||.|. |..+.+ .-|||.....+.|..|+..+..
T Consensus 10 HVFhl-tFPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHL-TFPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEE-E--TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEE-eCchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 44555 4999999999999999999874 444555 3799999999999999988763
No 169
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=92.89 E-value=11 Score=37.56 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=27.5
Q ss_pred CCceEEEcCCCCC------------CcHHHHHHHHhhCCceeEEEEee
Q 008385 127 PQTKVYVGKIAPT------------ADSDFVLSVLKVCGTVKSWKRAQ 162 (567)
Q Consensus 127 ~~~tlfVgnLp~~------------~te~~L~~~F~~~G~v~~~~i~~ 162 (567)
-..|||+.+||-. -++.-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4567777777742 45678999999999999888753
No 170
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=92.87 E-value=0.12 Score=38.60 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=22.4
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 008385 270 TNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 270 kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+|++||+|.+.++|..|+..||+.
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~ 44 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGR 44 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999999875
No 171
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=92.79 E-value=0.55 Score=52.74 Aligned_cols=8 Identities=0% Similarity=-0.247 Sum_probs=4.0
Q ss_pred HHhhCCce
Q 008385 148 VLKVCGTV 155 (567)
Q Consensus 148 ~F~~~G~v 155 (567)
=|+.|+.+
T Consensus 402 D~~~~ee~ 409 (830)
T KOG1923|consen 402 DFSRFEEQ 409 (830)
T ss_pred hHHHHHHH
Confidence 35555543
No 172
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=92.51 E-value=0.074 Score=52.59 Aligned_cols=63 Identities=11% Similarity=-0.000 Sum_probs=50.1
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVE 295 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~ 295 (567)
++|.||++.+++.+|++|+. ...+.+ ...-.+.+|.+.|.|-|.|...++|..|++.+|++..
T Consensus 86 v~v~NL~~~V~~~Dl~eLF~~~~~~~r-~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~l 149 (243)
T KOG0533|consen 86 VNVSNLPYGVIDADLKELFAEFGELKR-VAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVAL 149 (243)
T ss_pred eeeecCCcCcchHHHHHHHHHhccceE-EeeccCCCCCCCccceeeecchHhHHHHHHHhcCccc
Confidence 49999999999999999944 222222 1123478999999999999999999999999999533
No 173
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=91.94 E-value=0.71 Score=52.08 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=7.3
Q ss_pred CCCceEEEcCCC
Q 008385 126 KPQTKVYVGKIA 137 (567)
Q Consensus 126 ~~~~tlfVgnLp 137 (567)
......|+|++.
T Consensus 143 ~~~qR~f~gvvt 154 (1194)
T KOG4246|consen 143 NEPQRRFAGVVT 154 (1194)
T ss_pred CCcceeeehhhh
Confidence 345667777554
No 174
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.84 E-value=1.9 Score=43.42 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=45.8
Q ss_pred cCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 134 GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 134 gnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
-++|+.- -..|..+|.+||.|+..... ..-.|-+|-|.+..+|.+||.. ||..|+|..+
T Consensus 203 fGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vm 261 (350)
T KOG4285|consen 203 FGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVM 261 (350)
T ss_pred eccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceE
Confidence 3566543 35788899999999876542 3345999999999999999995 9999987643
No 175
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=91.81 E-value=0.1 Score=57.71 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=50.0
Q ss_pred cccccccccCCCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e 296 (567)
..|| +||+||++++++..|... +. ++.++--. +..+.-.-+.+|||.|.+..+++.|++.|++++..
T Consensus 173 ~TTN-lyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR--tEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 173 QTTN-LYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR--TEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cccc-eeeecCCccccHHHHHHHhcccCcccceeeeccc--chhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 4455 499999999999988665 33 44443322 22455566789999999999999999999998654
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=91.67 E-value=0.87 Score=35.16 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=44.6
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhC---CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVC---GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~---G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L 190 (567)
...|+|.++. .++..+|+.+|..| .....|..+-|. -|-|.|.+...|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4579999986 57889999999998 235677777773 6889999999999999764
No 177
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=91.42 E-value=0.097 Score=55.89 Aligned_cols=59 Identities=19% Similarity=0.040 Sum_probs=42.8
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL 290 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~l 290 (567)
+||+|||..++..+|+++++..+ +.+.+.....-.++..+||||+|.+..++..||.+-
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 59999999999999999977333 322222211223444599999999999999998755
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.12 E-value=2 Score=37.35 Aligned_cols=67 Identities=12% Similarity=0.035 Sum_probs=48.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
...+.+...|..++.++|..+.+.+- .|..++|+++. ..++-.+.+.|.+...|..-...+||..|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34444445555555567766666554 56778888862 335667899999999999999999999875
No 179
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.93 E-value=0.58 Score=44.54 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=45.9
Q ss_pred cHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEEchh
Q 008385 141 DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKVDQA 207 (567)
Q Consensus 141 te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln--g~~i~gr~l~V~~a~~ 207 (567)
....|+.+|..|+.+..+.+... .+=..|.|.+.+.|..|...|+ +..|.|..|+|.|+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34689999999999998877653 3567999999999999999999 9999999999988854
No 180
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.59 E-value=0.35 Score=45.78 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=45.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhh-CCceeEEEEee---cCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQ---YPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~~---~~~tg--~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
....|.|.+||+++|++++...++. +|....|..+. ...+. ...+-|||.|.+.+++..-+..++|+.|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4678999999999999999998887 66653333222 11111 12356899999999999999999998873
No 181
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=89.78 E-value=0.19 Score=53.25 Aligned_cols=74 Identities=7% Similarity=-0.020 Sum_probs=60.7
Q ss_pred CCceEEEcCCCCCCc-HHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTAD-SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~t-e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..+.|-+..+|+... -.+|...|.+||.|..|.|-.. --.|.|+|.+..+|..|.. .++..|+++.|+|.|-
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhc-cccceecCceeEEEEe
Confidence 456666666777654 4699999999999999988543 2478999999999999988 5999999999999887
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
+.
T Consensus 444 np 445 (526)
T KOG2135|consen 444 NP 445 (526)
T ss_pred cC
Confidence 65
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.52 E-value=3.5 Score=44.84 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=56.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhh--CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKV--CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELML 202 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~--~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng--~~i~gr~l~V 202 (567)
..|.|.+.-||.++-.+.++.||.. |-.+++|.+..+- -=||+|.+..+|+.|+..|.. .+|.|+.|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578889999999999999999985 8899999887652 459999999999999987733 4667777654
No 183
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.17 E-value=1.8 Score=34.58 Aligned_cols=67 Identities=12% Similarity=0.168 Sum_probs=39.3
Q ss_pred eEEEc-CCCCCCcHHHHHHHHhhCCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 130 KVYVG-KIAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 130 tlfVg-nLp~~~te~~L~~~F~~~G~-----v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
+|||. +=-..++..+|..+|...+. |-.+.|..+ |+||+-... .|..++..|++..+.|+.|.|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 22346788888888887653 456666544 999998764 6888999999999999999987
Q ss_pred Ec
Q 008385 204 VD 205 (567)
Q Consensus 204 ~a 205 (567)
.+
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 53
No 184
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=89.09 E-value=0.35 Score=40.97 Aligned_cols=61 Identities=3% Similarity=-0.212 Sum_probs=41.6
Q ss_pred cccCCCcccchhhhcCC-CCCC--cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 233 GAGKEDESVQSVEKNEP-TKSP--ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 233 ~v~nl~~~~~e~~l~e~-~ks~--~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
-+.|||-..+...|.++ ...+ ...-.-...+-.++-+.|||||.|.+.+.+.+-...++|.
T Consensus 5 MirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~ 68 (97)
T PF04059_consen 5 MIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGK 68 (97)
T ss_pred EEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCC
Confidence 57888888888887666 2200 0000011123567889999999999999999988877763
No 185
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.65 E-value=0.66 Score=50.27 Aligned_cols=68 Identities=19% Similarity=0.218 Sum_probs=47.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHh-hCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 129 TKVYVGKIAPTADSDFVLSVLK-VCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~-~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
+|+-|.|++...|-.+|..... ..|.---+.++.|-.+....|||||.|.+++.+..+.+++||+.+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~ 457 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWE 457 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchh
Confidence 4444444444444443333322 2566666777777677778899999999999999999999999774
No 186
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=87.62 E-value=3.4 Score=43.32 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 008385 285 EALEKLTC 292 (567)
Q Consensus 285 kAle~ln~ 292 (567)
..++.|.+
T Consensus 478 ~FMkEM~g 485 (487)
T KOG4672|consen 478 AFMKEMDG 485 (487)
T ss_pred HHHHHHhc
Confidence 33344444
No 187
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=87.47 E-value=0.23 Score=47.65 Aligned_cols=61 Identities=11% Similarity=-0.118 Sum_probs=45.5
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+|+...++++.|.+|+- ..-+.+++.. ....++.+ ||||.|.+.-+..-|++.+|++-
T Consensus 12 l~v~n~~~~v~eelL~ElfiqaGPV~kv~ip-~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~ 73 (267)
T KOG4454|consen 12 LLVQNMYSGVSEELLSELFIQAGPVYKVGIP-SGQDQEQK-FAYVFFPNENSVQLAGQLENGDD 73 (267)
T ss_pred HHHHhhhhhhhHHHHHHHhhccCceEEEeCC-CCccCCCc-eeeeecccccchhhhhhhcccch
Confidence 59999999999999999933 2112222211 24455666 99999999999999999999863
No 188
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.33 E-value=0.45 Score=48.66 Aligned_cols=53 Identities=21% Similarity=0.128 Sum_probs=41.1
Q ss_pred cccccccCCCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
...+||++|...+++.+|+.. .+ ++.+.- .+|+|||+|.++.+|+.|.++.-+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------~~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------RKGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------ccccceeeehhhHHHHHHHHhhcc
Confidence 344799999999999999887 33 333322 367999999999999999887655
No 189
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.32 E-value=2 Score=45.60 Aligned_cols=67 Identities=10% Similarity=0.105 Sum_probs=58.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeC
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~-aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
+++.|+|-.+|..++..+|..|+..|- .|..++|+++ |.+..| ..|.|.+..+|..-+..+||..|+
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd---~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRD---GMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeec---CCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 388999999999999999999998765 6889999995 444444 689999999999999999999885
No 190
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=86.81 E-value=10 Score=42.29 Aligned_cols=14 Identities=43% Similarity=0.475 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhH
Q 008385 478 EKRRKRIREKEEDL 491 (567)
Q Consensus 478 ~r~~~r~re~e~~~ 491 (567)
+..++|.++.++-.
T Consensus 352 ad~~dR~qeqee~~ 365 (668)
T KOG2253|consen 352 ADRRDRHQEQEELE 365 (668)
T ss_pred hhhhHHHHHHHHHH
Confidence 33455555555433
No 191
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=83.86 E-value=0.9 Score=52.97 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=25.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeec
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY 163 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~ 163 (567)
...+++|--+-..+..+.|+.+.+.||...++....|
T Consensus 71 kak~~~v~t~ka~~PpeHLrki~~~~sdm~s~~~~~D 107 (2365)
T COG5178 71 KAKTLHVLTLKAPIPPEHLRKIQSPCSDMPSVLTKVD 107 (2365)
T ss_pred hhhheeeeccCCCCCHHHHHhhhCccccchhhhhhhh
Confidence 3566777777777777888888887776665544433
No 192
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=83.59 E-value=46 Score=32.48 Aligned_cols=11 Identities=45% Similarity=0.516 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 008385 501 IAVAKRRAEEE 511 (567)
Q Consensus 501 ~~~~~~~~~~~ 511 (567)
.++.+++.++.
T Consensus 162 keeekr~~eE~ 172 (216)
T PF11600_consen 162 KEEEKRKKEEE 172 (216)
T ss_pred HHHHHHhhHHH
Confidence 44444444444
No 193
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=82.76 E-value=0.87 Score=46.18 Aligned_cols=8 Identities=0% Similarity=-0.043 Sum_probs=3.5
Q ss_pred HHHHHHhh
Q 008385 144 FVLSVLKV 151 (567)
Q Consensus 144 ~L~~~F~~ 151 (567)
.|.+||-+
T Consensus 85 videIyyq 92 (453)
T KOG2888|consen 85 VIDEIYYQ 92 (453)
T ss_pred HHHHHHHH
Confidence 34444443
No 194
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.94 E-value=5.7 Score=43.52 Aligned_cols=80 Identities=13% Similarity=0.137 Sum_probs=60.7
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHHhhC----CceeEEEEeecC----------CCCC---------------------
Q 008385 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVC----GTVKSWKRAQYP----------SNGT--------------------- 168 (567)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~----G~v~~~~i~~~~----------~tg~--------------------- 168 (567)
...+++|-|.||.| .+...+|..+|+.| |.|.+|.|.... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 45678999999999 57778999999866 589999886421 1222
Q ss_pred ---------------C-ccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEE
Q 008385 169 ---------------P-KGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 204 (567)
Q Consensus 169 ---------------~-kg~aFVef~~~~~A~~Ai~~Lng~~i~--gr~l~V~~ 204 (567)
. .-||.|+|.++..|...+...+|+.|. |..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 126899999999999999999999996 44555444
No 195
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=79.26 E-value=2.1 Score=42.27 Aligned_cols=83 Identities=13% Similarity=0.053 Sum_probs=62.9
Q ss_pred HHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-----CCccc
Q 008385 182 GVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-----SPENL 256 (567)
Q Consensus 182 ~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-----s~~~~ 256 (567)
-|..|-..|++....|+.|.|.|+... ++||.||...++.+.+..-+. +-.++
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a----------------------~l~V~nl~~~~sndll~~~f~~fg~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA----------------------ELYVVNLMQGASNDLLEQAFRRFGPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc----------------------eEEEEecchhhhhHHHHHhhhhcCccchhee
Confidence 467777789999999999999987552 359999998888777655422 11122
Q ss_pred ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 257 KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 257 k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
.+ +..|++.+-|+|.|...-.+.+|+..++
T Consensus 64 ~v-----D~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 64 KV-----DDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ee-----cccccccccchhhhhcchhHHHHHHHhc
Confidence 21 4568888999999999999999998874
No 196
>PHA03378 EBNA-3B; Provisional
Probab=78.63 E-value=17 Score=40.81 Aligned_cols=11 Identities=9% Similarity=0.244 Sum_probs=5.8
Q ss_pred CcHHHHHHHHh
Q 008385 140 ADSDFVLSVLK 150 (567)
Q Consensus 140 ~te~~L~~~F~ 150 (567)
-+..-|+.|+.
T Consensus 820 p~k~ilrqllt 830 (991)
T PHA03378 820 PTKQILRQLLT 830 (991)
T ss_pred cHHHHHHHHhh
Confidence 34455666553
No 197
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=78.53 E-value=1.7 Score=45.56 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=44.8
Q ss_pred ccccCCCcccchhhhcCCCC-------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHHh
Q 008385 232 AGAGKEDESVQSVEKNEPTK-------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEERL 298 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~~ 298 (567)
+|++||.+.++.++|..++. .-++++ .||+||.+.+...|.+|++.+++-+....
T Consensus 4 lyignL~p~~~psdl~svfg~ak~~~~g~fl~k------------~gyafvd~pdq~wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 4 LYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK------------SGYAFVDCPDQQWANKAIETLSGKVELQG 65 (584)
T ss_pred ccccccCCCCChHHHHHHhccccCCCCcceeee------------cceeeccCCchhhhhhhHHhhchhhhhcC
Confidence 59999999999999987744 222333 58999999999999999999999876543
No 198
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=76.42 E-value=31 Score=37.40 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=9.2
Q ss_pred eEEEcCCCCCCcHHHHHHHHh
Q 008385 130 KVYVGKIAPTADSDFVLSVLK 150 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~ 150 (567)
.+-+..|+..-.-..|..-..
T Consensus 483 ~ve~t~~~~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 483 KVETTALSSGDGRDALMAQIR 503 (569)
T ss_pred ceeeccCcCcccHHHHHHHHH
Confidence 444445554334444444433
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=76.06 E-value=12 Score=29.30 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=42.7
Q ss_pred CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 139 TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 139 ~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
.++-.+|+..+..|+- ..|..++ | | =||.|.+..+|.+|....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 5677899999999983 2344442 1 3 289999999999999999999988777654
No 200
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=75.67 E-value=7.3 Score=41.96 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=19.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhh
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKV 151 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~ 151 (567)
..+..++|-.-=+-.++..-|..+|..
T Consensus 303 ~r~~~t~W~s~D~~~~D~~r~~~LFEs 329 (817)
T KOG1925|consen 303 SRPCATLWASLDPVSVDTARLEHLFES 329 (817)
T ss_pred ccccchhhhccCcceecHHHHHHHHHH
Confidence 445667776655556788899999973
No 201
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=75.40 E-value=94 Score=31.19 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=11.0
Q ss_pred EEEEEeCC----HHHHHHHHHHhCCcee
Q 008385 172 FGFCEFES----AEGVLRALRLLNKFNI 195 (567)
Q Consensus 172 ~aFVef~~----~~~A~~Ai~~Lng~~i 195 (567)
+-||.|.. ..-+...+..|+|+.|
T Consensus 77 id~iifeael~n~gimkk~l~~ldgfsi 104 (445)
T KOG2891|consen 77 IDFIIFEAELENKGIMKKFLACLDGFSI 104 (445)
T ss_pred cceEEeeHhhhhhhHHHHHHHHhcCCee
Confidence 45555543 2233344445555544
No 202
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=73.05 E-value=7 Score=42.64 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=17.4
Q ss_pred ceeEEEEeecCCCCCCccEEE--EEeCCHHHHHHHHH
Q 008385 154 TVKSWKRAQYPSNGTPKGFGF--CEFESAEGVLRALR 188 (567)
Q Consensus 154 ~v~~~~i~~~~~tg~~kg~aF--Vef~~~~~A~~Ai~ 188 (567)
..+.|+|+.- ..+.+.|.++ ++.-+..+|..||.
T Consensus 303 pd~RcRvvNA-Ll~g~~GL~L~p~ec~sW~~avaaL~ 338 (582)
T PF03276_consen 303 PDLRCRVVNA-LLGGHLGLALTPNECGSWASAVAALY 338 (582)
T ss_pred ccHHHHHHHH-HhcCCCccccCccccccHHHHHHHHH
Confidence 3344444432 2444445443 55566777777763
No 203
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=70.13 E-value=3.7 Score=42.39 Aligned_cols=61 Identities=20% Similarity=0.059 Sum_probs=44.6
Q ss_pred ccccCCCcccchhhhcCCCCCCcccc---------cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPENLK---------DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~~~k---------~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
+||-.++..++...|.+++..|.+++ ...-.+.+|+..||-|.|+|+|...|..||+-+++
T Consensus 69 i~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 69 IFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 47888888888888777754222221 11123468999999999999999999999986654
No 204
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.64 E-value=13 Score=41.18 Aligned_cols=10 Identities=20% Similarity=-0.100 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 008385 282 ADQEALEKLT 291 (567)
Q Consensus 282 ~a~kAle~ln 291 (567)
++..+++.++
T Consensus 431 d~~~nse~~~ 440 (728)
T KOG4592|consen 431 DPYANSELLW 440 (728)
T ss_pred hHHHHHHHHH
Confidence 3344444333
No 205
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=65.96 E-value=2.4 Score=48.04 Aligned_cols=8 Identities=25% Similarity=0.870 Sum_probs=5.3
Q ss_pred CccEEEEE
Q 008385 169 PKGFGFCE 176 (567)
Q Consensus 169 ~kg~aFVe 176 (567)
.--||||.
T Consensus 157 ~DtygfVD 164 (1194)
T KOG4246|consen 157 TDTYGFVD 164 (1194)
T ss_pred cccccccc
Confidence 33588885
No 206
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=65.64 E-value=39 Score=40.71 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=2.5
Q ss_pred CCCCCCc
Q 008385 18 RTTSTTP 24 (567)
Q Consensus 18 ~~~~~~~ 24 (567)
+++..++
T Consensus 1838 s~ap~pp 1844 (1958)
T KOG0391|consen 1838 SPAPFPP 1844 (1958)
T ss_pred CCCCCCc
Confidence 3333333
No 207
>PHA03378 EBNA-3B; Provisional
Probab=65.35 E-value=37 Score=38.19 Aligned_cols=9 Identities=11% Similarity=0.442 Sum_probs=4.2
Q ss_pred ccccccccc
Q 008385 7 RKVGRLQIL 15 (567)
Q Consensus 7 ~~~~~~~~l 15 (567)
-+.|-|++-
T Consensus 667 ~~~~hi~~~ 675 (991)
T PHA03378 667 TQIGHIPYQ 675 (991)
T ss_pred cccCCcCCC
Confidence 344555543
No 208
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.78 E-value=93 Score=36.09 Aligned_cols=25 Identities=16% Similarity=0.157 Sum_probs=14.5
Q ss_pred HHHHHHHHhCCcee---CCeEEEEEEch
Q 008385 182 GVLRALRLLNKFNI---DGQELMLKVDQ 206 (567)
Q Consensus 182 ~A~~Ai~~Lng~~i---~gr~l~V~~a~ 206 (567)
-+..|...+|-+.. .|+.++++++.
T Consensus 220 RCr~CRtYiNPFV~fid~gr~WrCNlC~ 247 (887)
T KOG1985|consen 220 RCRRCRTYINPFVEFIDQGRRWRCNLCG 247 (887)
T ss_pred eehhhhhhcCCeEEecCCCceeeechhh
Confidence 35556666666543 36777776543
No 209
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=63.86 E-value=44 Score=33.64 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=37.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCce-eEEEEeecCCCCCCccEEEEEeCCHH
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAE 181 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v-~~~~i~~~~~tg~~kg~aFVef~~~~ 181 (567)
-.+-|||+||+.++.-.+|+..+.+.|.+ .++.. ..+.|-||+.|-+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 34569999999999999999999988743 44433 234688999998753
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=63.47 E-value=10 Score=41.37 Aligned_cols=93 Identities=15% Similarity=0.017 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccC
Q 008385 180 AEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDN 259 (567)
Q Consensus 180 ~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~ 259 (567)
.+-...+|..+.++.++.+-++|.-.. -..|+.+..|+.++-.+.++.|+++....+.+
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~---------------------kRcIvilREIpettp~e~Vk~lf~~encPk~i 205 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNH---------------------KRCIVILREIPETTPIEVVKALFKGENCPKVI 205 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCc---------------------ceeEEEEeecCCCChHHHHHHHhccCCCCCce
Confidence 444556666666666666555553221 12356788899999999999886621111111
Q ss_pred CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHHH
Q 008385 260 ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEER 297 (567)
Q Consensus 260 ~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e~ 297 (567)
.. +-+.+-+ =||+|++..+|..|...|...++++
T Consensus 206 sc---efa~N~n-WyITfesd~DAQqAykylreevk~f 239 (684)
T KOG2591|consen 206 SC---EFAHNDN-WYITFESDTDAQQAYKYLREEVKTF 239 (684)
T ss_pred ee---eeeecCc-eEEEeecchhHHHHHHHHHHHHHhh
Confidence 11 0111112 2899999999999999998887766
No 211
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=61.71 E-value=32 Score=39.50 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=13.0
Q ss_pred cccccccccccC-CCCCCCCchhhhh
Q 008385 5 TVRKVGRLQILH-KRTTSTTPFLQQT 29 (567)
Q Consensus 5 ~~~~~~~~~~l~-~~~~~~~~~~qq~ 29 (567)
....+-++|-++ ..+.+.+++|+++
T Consensus 543 ~~s~~~~~P~~ap~s~~~~tp~q~~~ 568 (756)
T KOG2375|consen 543 SSSPSIFLPRVAPASPMAMTPFQNSQ 568 (756)
T ss_pred cccCCCCCCCcCccccCCCCCCcccc
Confidence 344566677666 3334445544443
No 212
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.85 E-value=6.8 Score=36.78 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=54.2
Q ss_pred CCceEEEcCCCCCCcH-----HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 008385 127 PQTKVYVGKIAPTADS-----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te-----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr-~l 200 (567)
-.+++++.+|...+-. .....+|..|-....+.+++. .++--|.|.++..|..|...+++..|.|. .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3466788888764332 245677777766655555442 35667899999999999999999999988 77
Q ss_pred EEEEchh
Q 008385 201 MLKVDQA 207 (567)
Q Consensus 201 ~V~~a~~ 207 (567)
..-+++.
T Consensus 83 k~yfaQ~ 89 (193)
T KOG4019|consen 83 KLYFAQP 89 (193)
T ss_pred EEEEccC
Confidence 7776665
No 213
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=57.38 E-value=57 Score=35.50 Aligned_cols=6 Identities=17% Similarity=0.208 Sum_probs=2.3
Q ss_pred ceeEEE
Q 008385 154 TVKSWK 159 (567)
Q Consensus 154 ~v~~~~ 159 (567)
.+..+.
T Consensus 480 ql~~ve 485 (569)
T KOG3671|consen 480 QLKKVE 485 (569)
T ss_pred ccccee
Confidence 333443
No 214
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=55.17 E-value=8.2 Score=33.16 Aligned_cols=54 Identities=20% Similarity=0.091 Sum_probs=28.3
Q ss_pred ccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+.+.+++..++.++|++++. .+..+. -..| -..|||-|.+.++|..|++.+...
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD------~~~G--~~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVD------FSRG--DTEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--------TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEE------ecCC--CCEEEEEECCcchHHHHHHHHHhc
Confidence 34555667777777777744 111111 1111 238999999999999999988775
No 215
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=54.43 E-value=9 Score=40.58 Aligned_cols=65 Identities=15% Similarity=-0.002 Sum_probs=47.5
Q ss_pred cccccccCCCcccchhhhcCC-CC-----CCcccccCCCCCCCCCCC--------CceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEP-TK-----SPENLKDNETGNKESHDP--------TNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~--------kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..++.+.||+.+-.-+.|.+| +. +|.+++-+....+..|.+ +-+|||+|+..++|.+|.+.||..
T Consensus 231 srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 231 SRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred cceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 334588899999888888888 33 555676554444444444 457999999999999999998653
No 216
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=54.07 E-value=80 Score=36.10 Aligned_cols=8 Identities=13% Similarity=0.065 Sum_probs=4.1
Q ss_pred hCCceeEE
Q 008385 151 VCGTVKSW 158 (567)
Q Consensus 151 ~~G~v~~~ 158 (567)
.-|.|..+
T Consensus 1071 ~~~diIei 1078 (1106)
T KOG0162|consen 1071 KKGDIIEI 1078 (1106)
T ss_pred cCCCEEEE
Confidence 44555544
No 217
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.05 E-value=72 Score=37.16 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=6.3
Q ss_pred CCeEEEEEEchh
Q 008385 196 DGQELMLKVDQA 207 (567)
Q Consensus 196 ~gr~l~V~~a~~ 207 (567)
+|+...++++..
T Consensus 357 ~gr~f~Cn~C~~ 368 (1007)
T KOG1984|consen 357 GGRKFICNFCGS 368 (1007)
T ss_pred CCceEEecCCCc
Confidence 455555555443
No 218
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=53.02 E-value=18 Score=28.58 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=45.8
Q ss_pred HHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 143 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 143 ~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+|.+-|..+| .+..+..+..+.++.+..+-||+.....+... .|+=..|+|+.+.|..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr 61 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVER 61 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEec
Confidence 47888999999 78899999888888888899999886543333 3566677888888754
No 219
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=52.12 E-value=2.4 Score=46.04 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=55.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
.++|||.|++++++-..|..++..+-.+..+.+...........+++|+|.---...-|+.+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 478999999999999999999999888877776554333445568999999877777777778887664
No 220
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=51.35 E-value=12 Score=41.05 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.8
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 264 ~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+.|..+||.|++|++..+|..|+..|||.
T Consensus 99 ~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~ 128 (698)
T KOG2314|consen 99 DEEGGTKGYLFVEYASMRDAKKAVKSLNGK 128 (698)
T ss_pred CccCCeeeEEEEEecChhhHHHHHHhcccc
Confidence 445669999999999999999999999985
No 221
>PRK11901 hypothetical protein; Reviewed
Probab=51.10 E-value=1.5e+02 Score=30.81 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=40.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEE--EEEeCCHHHHHHHHHHhCC
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFG--FCEFESAEGVLRALRLLNK 192 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~a--FVef~~~~~A~~Ai~~Lng 192 (567)
....+|-|..+ ...+.|..|...++ +..+.|......|+. .|. |=.|.+.+.|..|+..|..
T Consensus 243 ~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 243 ASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 34566666554 45777888887776 344455444344554 343 3468999999999998764
No 222
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=49.54 E-value=3.8 Score=40.47 Aligned_cols=66 Identities=14% Similarity=-0.020 Sum_probs=44.5
Q ss_pred ccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCC--------CCCCc----eEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKES--------HDPTN----FGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~--------g~~kG----fgFV~f~~~e~a~kAle~ln~~ 293 (567)
-+.|+|+++||+.+.-..|+++ +....++++.......+ |.+.+ -|+|+|.+...|..+.+.||+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4567899999999999999998 44333333222222222 33333 3679999999999988888763
No 223
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=47.42 E-value=23 Score=37.84 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.5
Q ss_pred EEeCCHH
Q 008385 175 CEFESAE 181 (567)
Q Consensus 175 Vef~~~~ 181 (567)
|.|.+.-
T Consensus 385 vVfD~~V 391 (480)
T KOG2675|consen 385 VVFDDLV 391 (480)
T ss_pred EEEeccc
Confidence 5565543
No 224
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=46.99 E-value=36 Score=34.54 Aligned_cols=79 Identities=14% Similarity=0.109 Sum_probs=56.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecC-------CCCCCccEEEEEeCCHHHHHHHHH----HhCC--c
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-------SNGTPKGFGFCEFESAEGVLRALR----LLNK--F 193 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-------~tg~~kg~aFVef~~~~~A~~Ai~----~Lng--~ 193 (567)
..+.|...||...++-..+...|..||+|.+|.++.+. ...+......+.|-+.+.|..-+. .|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999998764 122344678899999887765442 2222 2
Q ss_pred eeCCeEEEEEEc
Q 008385 194 NIDGQELMLKVD 205 (567)
Q Consensus 194 ~i~gr~l~V~~a 205 (567)
.+....|.|.|.
T Consensus 94 ~L~S~~L~lsFV 105 (309)
T PF10567_consen 94 KLKSESLTLSFV 105 (309)
T ss_pred hcCCcceeEEEE
Confidence 345555666543
No 225
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=45.45 E-value=4.5e+02 Score=30.54 Aligned_cols=9 Identities=22% Similarity=0.021 Sum_probs=4.0
Q ss_pred EEeCCHHHH
Q 008385 275 VTEEDRKAD 283 (567)
Q Consensus 275 V~f~~~e~a 283 (567)
|+|++..-.
T Consensus 587 VCYeT~~Fv 595 (1259)
T KOG0163|consen 587 VCYETEQFV 595 (1259)
T ss_pred eeechHHHH
Confidence 444444433
No 226
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=45.22 E-value=71 Score=35.42 Aligned_cols=9 Identities=33% Similarity=0.235 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 008385 290 LTCMVEERL 298 (567)
Q Consensus 290 ln~~i~e~~ 298 (567)
|...++.+.
T Consensus 556 l~~aveAfy 564 (757)
T KOG4368|consen 556 LLAAVEAFY 564 (757)
T ss_pred HHHHHHHhh
Confidence 333334333
No 227
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.54 E-value=2.2e+02 Score=34.22 Aligned_cols=10 Identities=30% Similarity=0.780 Sum_probs=3.9
Q ss_pred HHHHHHhhCC
Q 008385 144 FVLSVLKVCG 153 (567)
Q Consensus 144 ~L~~~F~~~G 153 (567)
.+..+...|+
T Consensus 954 ~~e~~~~r~~ 963 (1049)
T KOG0307|consen 954 FLEELLQRCS 963 (1049)
T ss_pred HHHHHHHHhh
Confidence 3333334443
No 228
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=42.31 E-value=31 Score=28.48 Aligned_cols=52 Identities=4% Similarity=-0.036 Sum_probs=31.7
Q ss_pred ccccCCCcccchhhh----cCCCCCCc--ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEK----NEPTKSPE--NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l----~e~~ks~~--~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
++|.|||...+-..+ +.|+..|+ +.. -+.|.|+|.|.+.+.|..|.+.|++-
T Consensus 5 L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~----------v~~~tAilrF~~~~~A~RA~KRmegE 62 (90)
T PF11608_consen 5 LYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLS----------VSGGTAILRFPNQEFAERAQKRMEGE 62 (90)
T ss_dssp EEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT-
T ss_pred EEEecCCCCCCHHHHHHHHHHHhhccCCEEEE----------EeCCEEEEEeCCHHHHHHHHHhhccc
Confidence 578888877765544 33322222 222 12478999999999999999999874
No 229
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.70 E-value=2.6e+02 Score=29.09 Aligned_cols=71 Identities=15% Similarity=0.194 Sum_probs=38.6
Q ss_pred CceEEEcCCCCCCcHHHHH-----------HHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 128 QTKVYVGKIAPTADSDFVL-----------SVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~-----------~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
.+.|.|| |++.-|..+|+ -|...|| ...++.|+++-. .+ .+..-+......||.-|-..--
T Consensus 64 rrAvLiG-INY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~--~s----~~~~PT~~Nir~Al~wLV~~aq 136 (362)
T KOG1546|consen 64 RRAVLIG-INYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTD--ES----PVRIPTGKNIRRALRWLVESAQ 136 (362)
T ss_pred ceEEEEe-ecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCC--Cc----ccccCcHHHHHHHHHHHHhcCC
Confidence 3456664 77766666554 3445888 566777777632 11 1233444556666655533222
Q ss_pred CCeEEEEEEc
Q 008385 196 DGQELMLKVD 205 (567)
Q Consensus 196 ~gr~l~V~~a 205 (567)
-|-.|.+.|+
T Consensus 137 ~gD~LvfHYS 146 (362)
T KOG1546|consen 137 PGDSLVFHYS 146 (362)
T ss_pred CCCEEEEEec
Confidence 3455666655
No 230
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=41.52 E-value=46 Score=27.56 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=33.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeC
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE 178 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~ 178 (567)
...-|||||++..+-+.-...+...++.-.-+-+..+ ....||+|-++-
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 3456999999999988877777776554433333332 237899998874
No 231
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=40.71 E-value=9 Score=41.97 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=13.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 008385 482 KRIREKEEDLADEVREEEEIAVAKR 506 (567)
Q Consensus 482 ~r~re~e~~~~~r~re~~e~~~~~~ 506 (567)
+.+-+.+..+.|++++++++.+..+
T Consensus 270 e~~~~~~~ieed~~~~~~~il~k~~ 294 (752)
T KOG0670|consen 270 EEEAESEIIEEDRRKREEEILEKYK 294 (752)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4444555556656665555555433
No 232
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=40.58 E-value=55 Score=28.66 Aligned_cols=46 Identities=24% Similarity=0.275 Sum_probs=28.0
Q ss_pred CcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHH
Q 008385 140 ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALR 188 (567)
Q Consensus 140 ~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~-~~~A~~Ai~ 188 (567)
++...|...|+.|..+. +..+.+. ..+.|++.|.|.+ ...-..|+.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 45678999999999875 5555553 3677999999985 555566665
No 233
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.13 E-value=1.6e+02 Score=34.30 Aligned_cols=8 Identities=38% Similarity=0.567 Sum_probs=5.4
Q ss_pred EEEEeCCH
Q 008385 173 GFCEFESA 180 (567)
Q Consensus 173 aFVef~~~ 180 (567)
-||+|-+.
T Consensus 230 PFV~fid~ 237 (887)
T KOG1985|consen 230 PFVEFIDQ 237 (887)
T ss_pred CeEEecCC
Confidence 37777765
No 234
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=39.99 E-value=62 Score=35.64 Aligned_cols=17 Identities=6% Similarity=0.327 Sum_probs=10.9
Q ss_pred cEEEEEeCCHHHHHHHH
Q 008385 171 GFGFCEFESAEGVLRAL 187 (567)
Q Consensus 171 g~aFVef~~~~~A~~Ai 187 (567)
-|-+|.......+-+.|
T Consensus 372 EyevvYiKpLAg~Ykti 388 (574)
T PF07462_consen 372 EYEVVYIKPLAGMYKTI 388 (574)
T ss_pred ccceEEecchHHHHHHH
Confidence 46666666666666655
No 235
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=39.63 E-value=45 Score=26.20 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=45.5
Q ss_pred HHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 143 DFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 143 ~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
++|.+-|...| .|..+.-+..+.++.+...-||++....+... .|+=..|+|..|.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecC
Confidence 57888888889 78888888887788888999999887655222 34555677888887543
No 236
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.85 E-value=56 Score=34.49 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=45.3
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCc-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHH
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRL 189 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~ 189 (567)
.+.|=|.++|....-++|..+|+.||. --.|++|-+ -.+|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 467889999999988999999999984 345555555 3899999999999999973
No 237
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=36.94 E-value=37 Score=40.15 Aligned_cols=32 Identities=22% Similarity=0.239 Sum_probs=22.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 008385 482 KRIREKEEDLADEVREEEEIAVAKRRAEEEQL 513 (567)
Q Consensus 482 ~r~re~e~~~~~r~re~~e~~~~~~~~~~~~~ 513 (567)
..+..-.++.+.+....+.|.+.+++.+...-
T Consensus 141 ~~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~ 172 (997)
T KOG0334|consen 141 SIQARLAEELRKRRERVEKWKELKRKEEKEKV 172 (997)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcchHHhh
Confidence 34444556677788888999998887776443
No 238
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.98 E-value=1.3e+02 Score=34.10 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=6.8
Q ss_pred ceeCCeEEEEEEc
Q 008385 193 FNIDGQELMLKVD 205 (567)
Q Consensus 193 ~~i~gr~l~V~~a 205 (567)
.-+.|..+.+.+.
T Consensus 496 ~~~~~~~l~l~~~ 508 (585)
T PRK14950 496 VSVEKNTLTLSFK 508 (585)
T ss_pred eeecCCEEEEecC
Confidence 4445556665543
No 239
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=34.88 E-value=14 Score=37.80 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=3.4
Q ss_pred cEEEEEeC
Q 008385 171 GFGFCEFE 178 (567)
Q Consensus 171 g~aFVef~ 178 (567)
||-||-|.
T Consensus 161 GFmYiRYt 168 (453)
T KOG2888|consen 161 GFMYIRYT 168 (453)
T ss_pred eeeEEeec
Confidence 34444443
No 240
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.14 E-value=1.5e+02 Score=33.51 Aligned_cols=9 Identities=11% Similarity=0.276 Sum_probs=5.2
Q ss_pred CCeEEEEEE
Q 008385 196 DGQELMLKV 204 (567)
Q Consensus 196 ~gr~l~V~~ 204 (567)
.|+.+.|..
T Consensus 533 ~g~~~~v~c 541 (585)
T PRK14950 533 VGKTCAVRC 541 (585)
T ss_pred hCCceEEEE
Confidence 466666654
No 241
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.18 E-value=29 Score=34.07 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKR 160 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i 160 (567)
.....+||+-|||..+|++.|..+.+.+|-+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 345789999999999999999999999996655443
No 242
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=31.68 E-value=52 Score=33.94 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=6.8
Q ss_pred EEEEeCCHHHHHHHH
Q 008385 173 GFCEFESAEGVLRAL 187 (567)
Q Consensus 173 aFVef~~~~~A~~Ai 187 (567)
-||-|.-..-|-.||
T Consensus 176 v~vry~pe~iACaci 190 (367)
T KOG0835|consen 176 VFVRYSPESIACACI 190 (367)
T ss_pred eeeecCHHHHHHHHH
Confidence 455555444443333
No 243
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=29.89 E-value=1.9e+02 Score=32.02 Aligned_cols=17 Identities=24% Similarity=0.204 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q 008385 279 DRKADQEALEKLTCMVE 295 (567)
Q Consensus 279 ~~e~a~kAle~ln~~i~ 295 (567)
|...|...|+-.|.|..
T Consensus 467 Di~tAnDGl~YynKM~e 483 (574)
T PF07462_consen 467 DIATANDGLAYYNKMGE 483 (574)
T ss_pred hHHHhhhHHHHHHHHHH
Confidence 44445555554444433
No 244
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.81 E-value=83 Score=26.65 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCC
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES 179 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~ 179 (567)
...-||||+++..+-+.--..+-..++.= ++.++.. +....||+|-++..
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~--~~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWA--TNTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEc--CCCCCCcEEEecCC
Confidence 34569999999988887666666666542 2323332 23445999998775
No 245
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=29.55 E-value=99 Score=23.89 Aligned_cols=19 Identities=5% Similarity=-0.011 Sum_probs=15.7
Q ss_pred HHHHHHHhhCCceeEEEEe
Q 008385 143 DFVLSVLKVCGTVKSWKRA 161 (567)
Q Consensus 143 ~~L~~~F~~~G~v~~~~i~ 161 (567)
.+|+.+|+..|.|.-+.|-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 4899999999998776653
No 246
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.29 E-value=6.3e+02 Score=27.48 Aligned_cols=8 Identities=50% Similarity=0.331 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 008385 142 SDFVLSVL 149 (567)
Q Consensus 142 e~~L~~~F 149 (567)
.+++..++
T Consensus 146 ~~~v~sfl 153 (429)
T PRK00247 146 SEEVESFL 153 (429)
T ss_pred HHHHHHHH
Confidence 33444444
No 247
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=28.36 E-value=1.1e+02 Score=30.29 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCceEEEcCCCCCCcHH----HHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeC-CHHHHHHHHHHhCCceeCCeEEE
Q 008385 127 PQTKVYVGKIAPTADSD----FVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFE-SAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~----~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~-~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
....||||+|-...--. .|...+-.. +|.++.-.......|||.-... +.++...+|..+.+..+....+.
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~----~wslVq~q~~Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL 111 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDEN----SWSLVQPQLRSSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVL 111 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhc----cceeeeeeccccccccccccccccHHHHHHHHHHhhccCcccceEE
Confidence 36789999997643322 333333332 3333332222334467754444 67777778887777766666666
Q ss_pred EEEchhhHH
Q 008385 202 LKVDQATRE 210 (567)
Q Consensus 202 V~~a~~~~~ 210 (567)
|..+....+
T Consensus 112 ~GhSTGcQd 120 (299)
T KOG4840|consen 112 VGHSTGCQD 120 (299)
T ss_pred EecCccchH
Confidence 665544433
No 248
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=26.78 E-value=19 Score=36.99 Aligned_cols=17 Identities=12% Similarity=0.245 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHHHH
Q 008385 279 DRKADQEALEKLTCMVE 295 (567)
Q Consensus 279 ~~e~a~kAle~ln~~i~ 295 (567)
+.+.|.+|+..++.+..
T Consensus 146 ~Veeaq~~~~e~E~lk~ 162 (319)
T KOG0796|consen 146 NVEEAQKAMKEVEELKA 162 (319)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56778888777776653
No 249
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=24.45 E-value=3.8e+02 Score=31.42 Aligned_cols=7 Identities=14% Similarity=0.515 Sum_probs=3.0
Q ss_pred eEEEcCC
Q 008385 130 KVYVGKI 136 (567)
Q Consensus 130 tlfVgnL 136 (567)
+=||-.|
T Consensus 423 ~QYI~sL 429 (988)
T KOG2072|consen 423 SQYIPSL 429 (988)
T ss_pred cccchhH
Confidence 4444433
No 250
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.29 E-value=13 Score=39.54 Aligned_cols=78 Identities=6% Similarity=-0.090 Sum_probs=60.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
+..|+..|+..+++.++.-+|..||-|..+.+...-..|...-.+||.... .++..||.-|.-+.+.|-.++|.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999888776655566667788887664 457778877777777888888876644
No 251
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=24.05 E-value=3.5e+02 Score=32.65 Aligned_cols=15 Identities=13% Similarity=0.153 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHH
Q 008385 281 KADQEALEKLTCMVE 295 (567)
Q Consensus 281 e~a~kAle~ln~~i~ 295 (567)
..+..-|..|..+|.
T Consensus 335 A~sg~FL~~ik~lLe 349 (1228)
T PRK12270 335 AESGEFLRTIHQLLL 349 (1228)
T ss_pred HhHHHHHHHHHHHHh
Confidence 345556666666665
No 252
>KOG3600 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP240 [Transcription]
Probab=22.42 E-value=3.8e+02 Score=32.95 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=14.8
Q ss_pred CCCCCCCCceEEEcCCCCCCcHHHHHHHHh
Q 008385 121 VTPAEKPQTKVYVGKIAPTADSDFVLSVLK 150 (567)
Q Consensus 121 ~~~~~~~~~tlfVgnLp~~~te~~L~~~F~ 150 (567)
+.+..+..+.|||.-| -.+.|..||.
T Consensus 1117 t~q~iPEahSLyv~li----LSdsvmnlfk 1142 (2238)
T KOG3600|consen 1117 TKQRIPEAHSLYVALI----LSDSVMNLFK 1142 (2238)
T ss_pred ccCCCCccceeEEEEe----ehhHHHHHHh
Confidence 3334445678998643 2345566665
No 253
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=22.39 E-value=1.4e+02 Score=33.74 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=62.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
..+||+-|--..-+...+..+|..++.+....++.....+...+-+|++|..+..+..|.. |.+..+....+++
T Consensus 511 ~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 511 QPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred CCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 3489999998888888999999999999999999888888888889999999988877765 6777776665554
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.98 E-value=94 Score=32.75 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=48.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEE-EEeecCC--CCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPS--NGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~--tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
...|.|.+||+..+...|.+....|-.=+.| .+..... -..-.+++||.|....+...-...++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4578899999999999988888876643333 3331110 111246799999999998888888888766
No 255
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=21.60 E-value=1.4e+02 Score=24.84 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=30.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhh-CCceeEEEEeecCCCCCCccEEEEEeCC
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFES 179 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~~~~~tg~~kg~aFVef~~ 179 (567)
..-||||+++..+-+.--..+-.. .+. -++.++.. +....||+|-++..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCC
Confidence 456999999988887644444444 232 12323322 34566899988765
No 256
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=21.42 E-value=1.4e+02 Score=24.99 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=26.6
Q ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Q 008385 276 TEEDRKADQEALEKLTCMVEERLKTNPLPPPP 307 (567)
Q Consensus 276 ~f~~~e~a~kAle~ln~~i~e~~~~~~~~pp~ 307 (567)
+|.|-++...|++.+-++-++.++...|+.|+
T Consensus 18 T~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ 49 (104)
T KOG1766|consen 18 TWGDYESVTECMEGICKMYEEHLKKKNPSAPP 49 (104)
T ss_pred cccchHhHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 46688999999999999999999888765444
No 257
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=20.52 E-value=3.5e+02 Score=29.44 Aligned_cols=14 Identities=0% Similarity=-0.211 Sum_probs=6.1
Q ss_pred ccccccCCCCCCCC
Q 008385 10 GRLQILHKRTTSTT 23 (567)
Q Consensus 10 ~~~~~l~~~~~~~~ 23 (567)
-|++--+.++..+.
T Consensus 481 ~FF~D~~~a~~~a~ 494 (654)
T COG5180 481 TFFPDEDTAIQEAQ 494 (654)
T ss_pred ccCCCCCccCchHH
Confidence 34444444444333
No 258
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.27 E-value=1.5e+02 Score=32.91 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=44.4
Q ss_pred EEcCCCCCCcH---HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 132 YVGKIAPTADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 132 fVgnLp~~~te---~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
+||||+.-... ..|..+=.+||+|..+++-. .-.|...+.+.|..|+.. ||..+.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 46777664433 45666666999999888722 247888999999999986 8999988885
Done!