Query 008385
Match_columns 567
No_of_seqs 536 out of 3211
Neff 7.8
Searched_HMMs 29240
Date Tue Mar 26 00:57:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 99.9 4.8E-25 1.6E-29 214.0 11.4 147 127-293 14-166 (213)
2 1fxl_A Paraneoplastic encephal 99.9 3.3E-24 1.1E-28 198.3 13.8 152 127-293 1-153 (167)
3 1b7f_A Protein (SXL-lethal pro 99.9 3.2E-24 1.1E-28 198.9 13.3 152 127-293 2-154 (168)
4 3md3_A Nuclear and cytoplasmic 99.9 1.1E-23 3.6E-28 194.7 12.8 151 129-293 1-152 (166)
5 2qfj_A FBP-interacting repress 99.9 1.1E-23 3.8E-28 203.6 13.3 163 127-293 27-190 (216)
6 1l3k_A Heterogeneous nuclear r 99.9 2.2E-23 7.7E-28 198.3 13.6 155 125-289 10-165 (196)
7 3nmr_A Cugbp ELAV-like family 99.9 1.4E-23 4.6E-28 195.8 11.5 147 127-293 2-159 (175)
8 2cjk_A Nuclear polyadenylated 99.9 2.2E-23 7.7E-28 193.2 9.6 148 127-292 2-150 (167)
9 3pgw_S U1-70K; protein-RNA com 99.9 7E-23 2.4E-27 219.2 13.0 84 125-208 99-182 (437)
10 1fje_B Nucleolin RBD12, protei 99.9 4.6E-23 1.6E-27 192.9 9.6 150 125-293 10-159 (175)
11 3tyt_A Heterogeneous nuclear r 99.9 8.3E-23 2.8E-27 197.2 10.0 158 127-293 3-188 (205)
12 3smz_A Protein raver-1, ribonu 99.9 9.7E-22 3.3E-26 198.6 15.6 156 127-294 94-250 (284)
13 3sde_A Paraspeckle component 1 99.9 7.4E-22 2.5E-26 197.5 12.3 134 126-292 20-159 (261)
14 3pgw_A U1-A; protein-RNA compl 99.9 2.3E-21 7.8E-26 195.7 13.8 161 125-293 6-267 (282)
15 2g4b_A Splicing factor U2AF 65 99.8 2.5E-21 8.5E-26 180.2 10.3 145 127-293 3-159 (172)
16 2yh0_A Splicing factor U2AF 65 99.8 2.5E-22 8.7E-27 191.3 1.8 160 127-293 3-179 (198)
17 2ghp_A U4/U6 snRNA-associated 99.8 4.7E-21 1.6E-25 194.4 10.7 152 127-293 116-276 (292)
18 2adc_A Polypyrimidine tract-bi 99.8 7.3E-21 2.5E-25 186.5 10.0 158 126-293 32-212 (229)
19 3smz_A Protein raver-1, ribonu 99.8 1.7E-20 5.8E-25 189.5 12.2 139 127-293 21-160 (284)
20 2ghp_A U4/U6 snRNA-associated 99.8 2.2E-20 7.5E-25 189.5 12.1 143 125-293 38-182 (292)
21 1qm9_A Polypyrimidine tract-bi 99.8 1.2E-20 4.1E-25 180.2 7.1 156 128-293 3-181 (198)
22 4f25_A Polyadenylate-binding p 99.8 5.6E-20 1.9E-24 160.6 9.8 109 128-245 5-113 (115)
23 4fxv_A ELAV-like protein 1; RN 99.8 2.3E-19 7.8E-24 152.5 11.4 82 126-207 17-98 (99)
24 3s8s_A Histone-lysine N-methyl 99.8 3.2E-18 1.1E-22 148.3 12.9 83 127-209 5-87 (110)
25 2khc_A Testis-specific RNP-typ 99.8 7.4E-18 2.5E-22 147.5 14.6 82 125-206 37-118 (118)
26 2lxi_A RNA-binding protein 10; 99.7 6.9E-19 2.4E-23 147.1 5.0 81 128-208 1-83 (91)
27 2lkz_A RNA-binding protein 5; 99.7 2.8E-18 9.7E-23 144.5 8.8 83 125-207 6-94 (95)
28 3n9u_C Cleavage and polyadenyl 99.7 9.3E-18 3.2E-22 154.6 12.6 82 127-208 54-137 (156)
29 3ns6_A Eukaryotic translation 99.7 3.6E-18 1.2E-22 145.2 8.1 86 126-211 4-96 (100)
30 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.8E-17 6.2E-22 136.7 11.2 81 127-207 5-85 (87)
31 2cq4_A RNA binding motif prote 99.7 1.2E-17 4.3E-22 145.2 10.6 82 126-208 23-104 (114)
32 2e5h_A Zinc finger CCHC-type a 99.7 3.3E-17 1.1E-21 137.3 12.8 81 126-206 14-94 (94)
33 3md1_A Nuclear and cytoplasmic 99.7 2.1E-17 7.2E-22 135.0 11.1 81 128-208 1-81 (83)
34 2cpz_A CUG triplet repeat RNA- 99.7 3.7E-17 1.3E-21 142.4 13.1 83 126-208 23-105 (115)
35 2la6_A RNA-binding protein FUS 99.7 2.4E-17 8.1E-22 139.7 11.5 81 126-206 11-99 (99)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.7 2.2E-17 7.5E-22 135.5 10.7 81 126-206 5-85 (85)
37 2x1f_A MRNA 3'-END-processing 99.7 2.6E-17 8.8E-22 138.7 11.2 84 127-210 1-84 (96)
38 2dgs_A DAZ-associated protein 99.7 3.6E-17 1.2E-21 138.5 11.4 82 126-208 8-89 (99)
39 2cqc_A Arginine/serine-rich sp 99.7 4.6E-17 1.6E-21 136.5 11.8 82 126-207 13-94 (95)
40 1x5u_A Splicing factor 3B subu 99.7 3.9E-17 1.3E-21 139.7 11.4 83 126-208 13-95 (105)
41 3p5t_L Cleavage and polyadenyl 99.7 6.7E-18 2.3E-22 140.6 6.4 80 129-208 2-83 (90)
42 2dnz_A Probable RNA-binding pr 99.7 3.7E-17 1.3E-21 137.2 10.9 82 127-208 4-85 (95)
43 2jrs_A RNA-binding protein 39; 99.7 3.6E-17 1.2E-21 141.2 10.8 83 125-207 23-105 (108)
44 2cq0_A Eukaryotic translation 99.7 5.4E-17 1.8E-21 138.5 11.6 84 125-208 12-95 (103)
45 2dnm_A SRP46 splicing factor; 99.7 2.4E-17 8.4E-22 140.6 9.3 83 125-207 10-92 (103)
46 2dgo_A Cytotoxic granule-assoc 99.7 7.9E-17 2.7E-21 140.3 12.8 84 125-208 12-95 (115)
47 1u6f_A Tcubp1, RNA-binding pro 99.7 1.5E-16 5E-21 143.4 14.7 84 125-208 39-122 (139)
48 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.9E-17 1.3E-21 139.0 10.3 83 126-208 10-92 (102)
49 1whw_A Hypothetical protein ri 99.7 5.9E-17 2E-21 137.1 11.3 83 126-208 6-88 (99)
50 1p27_B RNA-binding protein 8A; 99.7 4E-17 1.4E-21 140.0 10.3 82 126-207 21-102 (106)
51 1x5t_A Splicing factor 3B subu 99.7 3.5E-17 1.2E-21 137.6 9.8 83 126-208 3-86 (96)
52 1oo0_B CG8781-PA, drosophila Y 99.7 5.2E-17 1.8E-21 140.3 10.8 82 126-207 24-105 (110)
53 3s7r_A Heterogeneous nuclear r 99.7 7.9E-17 2.7E-21 132.9 11.4 80 125-205 8-87 (87)
54 2do4_A Squamous cell carcinoma 99.7 1.2E-16 4.2E-21 135.4 12.6 82 126-208 15-96 (100)
55 3ulh_A THO complex subunit 4; 99.7 8.9E-17 3.1E-21 138.0 11.7 80 126-206 27-106 (107)
56 2ywk_A Putative RNA-binding pr 99.7 5.8E-17 2E-21 136.0 10.2 80 126-206 14-93 (95)
57 1x5s_A Cold-inducible RNA-bind 99.7 5.9E-17 2E-21 137.9 10.3 83 126-208 10-92 (102)
58 1x4h_A RNA-binding protein 28; 99.7 7.7E-17 2.6E-21 139.3 11.2 83 126-208 13-101 (111)
59 2dnh_A Bruno-like 5, RNA bindi 99.7 9.7E-17 3.3E-21 137.3 11.7 82 126-208 13-97 (105)
60 2cph_A RNA binding motif prote 99.7 8.3E-17 2.8E-21 138.1 11.2 84 125-208 12-97 (107)
61 2div_A TRNA selenocysteine ass 99.7 6.3E-17 2.2E-21 136.9 10.1 82 126-207 7-93 (99)
62 2dgp_A Bruno-like 4, RNA bindi 99.7 6E-17 2E-21 138.9 10.1 84 125-208 10-96 (106)
63 2cpe_A RNA-binding protein EWS 99.7 9.9E-17 3.4E-21 139.2 11.2 84 125-208 12-103 (113)
64 2cpf_A RNA binding motif prote 99.7 6.1E-17 2.1E-21 136.8 9.5 83 126-208 3-88 (98)
65 1s79_A Lupus LA protein; RRM, 99.7 4.2E-17 1.4E-21 139.5 8.6 80 126-207 9-88 (103)
66 3ucg_A Polyadenylate-binding p 99.7 1.1E-16 3.7E-21 132.5 10.6 79 128-207 6-84 (89)
67 2dng_A Eukaryotic translation 99.7 1.6E-16 5.6E-21 135.5 11.8 81 126-208 13-93 (103)
68 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.5E-17 8.4E-22 140.0 6.5 81 125-207 16-97 (100)
69 3ex7_B RNA-binding protein 8A; 99.7 8.3E-17 2.8E-21 142.5 9.9 83 126-208 20-102 (126)
70 2cqi_A Nucleolysin TIAR; RNA r 99.7 3.1E-16 1E-20 133.7 12.9 82 125-208 12-93 (103)
71 2kxn_B Transformer-2 protein h 99.7 7.1E-17 2.4E-21 143.9 9.2 83 126-208 44-126 (129)
72 4a8x_A RNA-binding protein wit 99.7 1E-16 3.5E-21 132.3 9.5 81 127-207 3-84 (88)
73 1wi8_A EIF-4B, eukaryotic tran 99.7 1.7E-16 5.8E-21 135.7 11.1 81 126-208 13-94 (104)
74 2cqp_A RNA-binding protein 12; 99.7 1.2E-16 3.9E-21 135.0 9.7 82 126-207 13-94 (98)
75 2fy1_A RNA-binding motif prote 99.7 1.2E-16 4.1E-21 139.7 10.1 82 126-208 5-86 (116)
76 2rs2_A Musashi-1, RNA-binding 99.7 1.4E-16 4.6E-21 137.7 10.3 82 125-207 22-103 (109)
77 2m2b_A RNA-binding protein 10; 99.7 4.3E-17 1.5E-21 145.6 7.3 83 125-208 20-108 (131)
78 2d9p_A Polyadenylate-binding p 99.7 1.9E-16 6.4E-21 135.1 11.0 82 125-208 12-93 (103)
79 2cqd_A RNA-binding region cont 99.7 2.8E-16 9.5E-21 137.1 12.2 82 125-207 14-95 (116)
80 2err_A Ataxin-2-binding protei 99.7 1.5E-16 5.1E-21 137.4 10.2 81 125-207 26-106 (109)
81 1p1t_A Cleavage stimulation fa 99.7 9.4E-17 3.2E-21 137.0 8.6 84 126-209 6-89 (104)
82 1x4e_A RNA binding motif, sing 99.7 3E-17 1E-21 134.9 5.2 80 126-205 3-82 (85)
83 2nlw_A Eukaryotic translation 99.7 7.4E-17 2.5E-21 138.3 7.8 82 125-208 12-100 (105)
84 2cq3_A RNA-binding protein 9; 99.7 5.6E-16 1.9E-20 132.1 13.2 82 125-208 12-93 (103)
85 2do0_A HnRNP M, heterogeneous 99.7 3.8E-16 1.3E-20 135.7 12.3 81 126-207 13-93 (114)
86 2mss_A Protein (musashi1); RNA 99.7 6.7E-17 2.3E-21 129.5 6.9 75 130-205 1-75 (75)
87 2ek1_A RNA-binding protein 12; 99.7 1E-16 3.4E-21 134.5 8.1 80 127-206 14-93 (95)
88 2wbr_A GW182, gawky, LD47780P; 99.7 2.2E-16 7.4E-21 129.2 9.8 74 127-206 6-79 (89)
89 2dgv_A HnRNP M, heterogeneous 99.7 2E-16 6.8E-21 131.9 9.9 81 126-208 6-86 (92)
90 2dgw_A Probable RNA-binding pr 99.7 4.2E-16 1.4E-20 129.7 11.8 81 125-208 7-87 (91)
91 2dhg_A TRNA selenocysteine ass 99.7 1.3E-16 4.3E-21 136.3 8.7 81 126-207 7-89 (104)
92 2cqg_A TDP-43, TAR DNA-binding 99.7 5.2E-16 1.8E-20 132.3 12.6 82 125-208 12-93 (103)
93 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.7E-16 9.3E-21 146.1 11.7 83 126-208 70-152 (165)
94 2dgx_A KIAA0430 protein; RRM d 99.7 3.3E-16 1.1E-20 131.9 11.1 78 127-207 8-89 (96)
95 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 4.7E-16 1.6E-20 139.9 12.6 80 126-205 61-140 (140)
96 2a3j_A U1 small nuclear ribonu 99.7 2.5E-16 8.6E-21 139.7 10.3 83 126-211 27-113 (127)
97 2dh8_A DAZ-associated protein 99.7 2.1E-16 7.2E-21 135.2 9.5 83 125-208 13-95 (105)
98 2kt5_A RNA and export factor-b 99.7 1.5E-15 5.2E-20 134.0 15.3 82 126-208 33-114 (124)
99 2jwn_A Embryonic polyadenylate 99.7 1.4E-16 4.7E-21 140.6 8.5 80 127-207 35-114 (124)
100 2db1_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 137.2 10.7 82 125-208 14-98 (118)
101 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.9E-17 3.4E-21 129.0 6.6 76 129-205 1-76 (77)
102 2cpy_A RNA-binding protein 12; 99.7 3.4E-16 1.2E-20 136.2 10.5 81 126-208 13-94 (114)
103 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.1E-16 1.7E-20 142.8 12.2 82 126-207 37-118 (156)
104 1x4b_A Heterogeneous nuclear r 99.7 2.9E-16 1E-20 136.9 9.7 81 127-208 26-106 (116)
105 1x5o_A RNA binding motif, sing 99.6 9.4E-16 3.2E-20 133.2 12.8 82 125-207 22-111 (114)
106 1x4a_A Splicing factor, argini 99.6 1.3E-15 4.5E-20 131.2 13.5 79 126-207 20-98 (109)
107 1wel_A RNA-binding protein 12; 99.6 2.6E-16 8.9E-21 139.1 9.2 82 126-208 23-104 (124)
108 1sjq_A Polypyrimidine tract-bi 99.6 2.7E-16 9.3E-21 134.2 8.8 75 127-207 15-91 (105)
109 2ki2_A SS-DNA binding protein 99.6 6.7E-17 2.3E-21 134.3 4.7 79 129-208 2-80 (90)
110 2kn4_A Immunoglobulin G-bindin 99.6 6.2E-16 2.1E-20 142.3 11.5 83 126-208 68-150 (158)
111 2dis_A Unnamed protein product 99.6 3.5E-16 1.2E-20 134.8 8.8 83 126-208 6-92 (109)
112 3q2s_C Cleavage and polyadenyl 99.6 2.3E-16 7.9E-21 154.5 8.7 83 127-209 67-151 (229)
113 2krb_A Eukaryotic translation 99.6 1.5E-16 5.2E-21 129.5 6.1 73 128-202 1-80 (81)
114 2j8a_A Histone-lysine N-methyl 99.6 3.5E-16 1.2E-20 136.4 8.6 81 128-208 2-96 (136)
115 2hvz_A Splicing factor, argini 99.6 2.8E-16 9.5E-21 133.5 7.8 75 129-208 1-75 (101)
116 1fj7_A Nucleolin RBD1, protein 99.6 9.3E-17 3.2E-21 136.5 4.7 80 126-207 15-94 (101)
117 2lea_A Serine/arginine-rich sp 99.6 2E-16 6.7E-21 142.1 7.0 83 126-208 45-127 (135)
118 3r27_A HnRNP L, heterogeneous 99.6 7.3E-16 2.5E-20 130.3 10.1 78 125-208 18-97 (100)
119 2cpi_A CCR4-NOT transcription 99.6 4.2E-16 1.4E-20 135.0 8.5 82 127-208 14-101 (111)
120 2cq1_A PTB-like protein L; RRM 99.6 1.6E-15 5.4E-20 129.1 11.8 77 125-207 12-90 (101)
121 1wez_A HnRNP H', FTP-3, hetero 99.6 4.7E-16 1.6E-20 132.7 8.1 79 126-207 13-91 (102)
122 1wg5_A Heterogeneous nuclear r 99.6 1E-15 3.4E-20 131.0 10.0 80 126-207 13-93 (104)
123 1nu4_A U1A RNA binding domain; 99.6 4.2E-16 1.4E-20 131.2 7.3 82 126-210 6-91 (97)
124 3lqv_A PRE-mRNA branch site pr 99.6 1.3E-15 4.6E-20 132.4 10.7 80 127-209 7-86 (115)
125 2cpx_A Hypothetical protein FL 99.6 5.3E-16 1.8E-20 134.9 8.1 83 126-208 23-105 (115)
126 2hgl_A HNRPF protein, heteroge 99.6 7.9E-16 2.7E-20 138.1 9.2 81 126-208 42-125 (136)
127 1iqt_A AUF1, heterogeneous nuc 99.6 2.5E-16 8.7E-21 126.0 5.4 75 130-205 1-75 (75)
128 3pgw_A U1-A; protein-RNA compl 99.6 1.1E-14 3.8E-19 146.5 18.6 77 125-206 204-281 (282)
129 2lmi_A GRSF-1, G-rich sequence 99.6 4E-16 1.4E-20 134.2 6.9 82 125-208 8-92 (107)
130 2xnq_A Nuclear polyadenylated 99.6 2.2E-15 7.4E-20 127.3 11.1 75 125-207 19-94 (97)
131 1x4c_A Splicing factor, argini 99.6 2.7E-15 9.2E-20 129.2 12.0 75 126-207 13-92 (108)
132 2fc9_A NCL protein; structure 99.6 2E-15 6.9E-20 128.1 11.0 80 125-208 12-91 (101)
133 1x4d_A Matrin 3; structural ge 99.6 1E-15 3.5E-20 130.3 8.8 76 127-208 14-92 (102)
134 2jvo_A Nucleolar protein 3; nu 99.6 1.6E-15 5.6E-20 130.7 10.2 76 125-208 28-103 (108)
135 2dnn_A RNA-binding protein 12; 99.6 1.8E-15 6.1E-20 130.6 10.3 78 127-207 15-92 (109)
136 2ytc_A PRE-mRNA-splicing facto 99.6 2.4E-15 8.3E-20 123.3 10.7 76 125-206 9-85 (85)
137 2fc8_A NCL protein; structure 99.6 2.5E-15 8.6E-20 127.7 11.0 81 125-208 12-92 (102)
138 2jvr_A Nucleolar protein 3; RN 99.6 1.9E-15 6.5E-20 130.8 9.8 78 127-208 27-105 (111)
139 2ad9_A Polypyrimidine tract-bi 99.6 1.4E-15 4.9E-20 132.9 9.0 76 126-207 29-106 (119)
140 2f3j_A RNA and export factor b 99.6 4.6E-15 1.6E-19 139.4 12.8 82 126-208 86-167 (177)
141 3pgw_S U1-70K; protein-RNA com 99.6 1.2E-17 4.1E-22 178.6 -5.8 149 145-294 9-168 (437)
142 2la4_A Nuclear and cytoplasmic 99.6 2E-15 6.8E-20 128.2 9.1 75 127-207 26-100 (101)
143 2dnq_A RNA-binding protein 4B; 99.6 3.4E-15 1.2E-19 124.0 10.1 75 126-208 6-80 (90)
144 2e5j_A Methenyltetrahydrofolat 99.6 4.2E-15 1.5E-19 125.3 10.5 78 126-208 17-94 (97)
145 2dgt_A RNA-binding protein 30; 99.6 6.5E-15 2.2E-19 122.8 11.4 76 125-208 7-82 (92)
146 1why_A Hypothetical protein ri 99.6 6.1E-15 2.1E-19 124.2 11.3 76 127-208 16-93 (97)
147 1x4f_A Matrin 3; structural ge 99.6 4.6E-15 1.6E-19 128.3 10.6 78 125-208 22-102 (112)
148 1x4g_A Nucleolysin TIAR; struc 99.6 3.8E-15 1.3E-19 128.3 10.1 77 126-208 23-99 (109)
149 1fjc_A Nucleolin RBD2, protein 99.6 1.7E-15 5.7E-20 127.4 7.5 78 125-207 13-90 (96)
150 1wex_A Hypothetical protein (r 99.6 3.9E-15 1.3E-19 127.4 9.7 76 126-207 13-90 (104)
151 3egn_A RNA-binding protein 40; 99.6 6.2E-16 2.1E-20 140.1 4.9 83 126-208 43-130 (143)
152 2xs2_A Deleted in azoospermia- 99.6 1.3E-15 4.4E-20 129.6 6.6 79 127-208 8-86 (102)
153 2cpj_A Non-POU domain-containi 99.6 5.7E-15 2E-19 124.9 9.9 76 126-207 13-88 (99)
154 1whx_A Hypothetical protein ri 99.6 2.1E-15 7.3E-20 130.6 7.3 75 127-207 9-83 (111)
155 1wf1_A RNA-binding protein RAL 99.6 1.3E-14 4.3E-19 125.3 11.9 74 126-207 25-99 (110)
156 2lcw_A RNA-binding protein FUS 99.4 1.7E-16 5.8E-21 138.5 0.0 83 126-208 5-95 (116)
157 3md3_A Nuclear and cytoplasmic 99.6 1.6E-14 5.3E-19 132.8 12.5 81 126-206 85-165 (166)
158 2dnp_A RNA-binding protein 14; 99.6 1.1E-14 3.6E-19 121.0 10.3 75 126-208 7-81 (90)
159 2cpd_A Apobec-1 stimulating pr 99.6 2.5E-14 8.7E-19 120.9 12.2 76 125-208 12-89 (99)
160 2i2y_A Fusion protein consists 99.6 8.7E-15 3E-19 133.6 9.9 78 126-208 71-148 (150)
161 2dgu_A Heterogeneous nuclear r 99.6 1.6E-14 5.6E-19 123.0 10.9 75 126-208 9-83 (103)
162 2e44_A Insulin-like growth fac 99.6 1E-14 3.5E-19 122.5 9.2 79 126-208 13-92 (96)
163 2dha_A FLJ20171 protein; RRM d 99.5 5.9E-15 2E-19 130.1 7.8 80 126-207 21-104 (123)
164 2kvi_A Nuclear polyadenylated 99.5 7.4E-15 2.5E-19 123.6 8.0 75 126-208 8-83 (96)
165 2hgm_A HNRPF protein, heteroge 99.5 6.5E-15 2.2E-19 130.2 7.7 78 127-207 41-120 (126)
166 2e5g_A U6 snRNA-specific termi 99.5 1.4E-14 4.8E-19 121.3 8.8 75 127-207 7-81 (94)
167 2g4b_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 132.6 11.4 79 127-205 93-171 (172)
168 2hgn_A Heterogeneous nuclear r 99.5 2.5E-15 8.6E-20 135.3 4.3 80 126-208 44-123 (139)
169 2cqh_A IGF-II mRNA-binding pro 99.5 1.9E-14 6.7E-19 120.1 9.2 75 126-207 6-82 (93)
170 1wg1_A KIAA1579 protein, homol 99.5 1.9E-14 6.5E-19 119.0 9.0 74 127-207 4-77 (88)
171 1x5p_A Negative elongation fac 99.5 6.1E-14 2.1E-18 118.1 11.6 75 126-208 13-87 (97)
172 3d2w_A TAR DNA-binding protein 99.5 3E-14 1E-18 118.3 9.5 74 126-208 9-84 (89)
173 3beg_B Splicing factor, argini 99.5 1.3E-14 4.3E-19 126.5 7.5 73 127-206 15-92 (115)
174 2cq2_A Hypothetical protein LO 99.5 2.2E-14 7.6E-19 124.1 8.8 76 126-207 23-105 (114)
175 2dnl_A Cytoplasmic polyadenyla 99.5 1.7E-14 5.9E-19 125.4 8.1 77 126-205 6-85 (114)
176 4f02_A Polyadenylate-binding p 99.5 3.9E-14 1.3E-18 136.9 11.5 82 127-210 102-183 (213)
177 2diu_A KIAA0430 protein; struc 99.5 1.5E-14 5E-19 119.5 6.9 72 128-209 8-85 (96)
178 2qfj_A FBP-interacting repress 99.5 3.7E-14 1.3E-18 136.5 10.7 83 126-208 123-205 (216)
179 1sjr_A Polypyrimidine tract-bi 99.5 5.3E-14 1.8E-18 129.3 10.2 78 127-208 45-124 (164)
180 2cjk_A Nuclear polyadenylated 99.5 2.2E-14 7.4E-19 132.3 7.4 80 127-207 86-165 (167)
181 2yh0_A Splicing factor U2AF 65 99.5 6.6E-14 2.2E-18 132.8 10.9 82 126-207 112-193 (198)
182 2hzc_A Splicing factor U2AF 65 99.5 5.6E-14 1.9E-18 115.5 8.8 72 126-204 4-86 (87)
183 3zzy_A Polypyrimidine tract-bi 99.5 9.4E-14 3.2E-18 122.9 10.7 77 127-208 27-106 (130)
184 2pe8_A Splicing factor 45; RRM 99.5 1.6E-13 5.5E-18 117.5 11.6 82 126-207 6-93 (105)
185 1l3k_A Heterogeneous nuclear r 99.5 8.7E-14 3E-18 131.7 10.9 82 127-209 103-184 (196)
186 1b7f_A Protein (SXL-lethal pro 99.5 1.3E-13 4.5E-18 127.0 11.4 79 127-205 88-168 (168)
187 2e5i_A Heterogeneous nuclear r 99.5 3.5E-13 1.2E-17 118.7 12.9 75 128-208 25-102 (124)
188 1fxl_A Paraneoplastic encephal 99.5 1.6E-13 5.5E-18 126.1 10.4 79 127-205 87-167 (167)
189 2bz2_A Negative elongation fac 99.5 1.4E-13 4.8E-18 121.0 9.3 75 126-208 37-111 (121)
190 3nmr_A Cugbp ELAV-like family 99.4 2E-13 6.7E-18 126.6 9.7 79 127-206 94-175 (175)
191 2voo_A Lupus LA protein; RNA-b 99.4 2.7E-13 9.2E-18 129.1 10.7 79 127-207 108-186 (193)
192 1wf0_A TDP-43, TAR DNA-binding 99.4 1.1E-13 3.7E-18 114.3 5.8 74 127-207 4-77 (88)
193 3u1l_A PRE-mRNA-splicing facto 99.4 2.9E-13 9.8E-18 132.4 8.5 79 125-209 131-230 (240)
194 1fje_B Nucleolin RBD12, protei 99.4 5.5E-13 1.9E-17 124.0 9.8 76 127-207 98-173 (175)
195 3tyt_A Heterogeneous nuclear r 99.4 9.4E-13 3.2E-17 126.6 8.6 78 126-205 121-204 (205)
196 2dit_A HIV TAT specific factor 99.3 2.4E-12 8.1E-17 111.4 9.5 79 126-208 13-102 (112)
197 2kn4_A Immunoglobulin G-bindin 99.3 3.1E-13 1.1E-17 124.1 3.9 133 157-293 2-135 (158)
198 3v4m_A Splicing factor U2AF 65 99.3 3.4E-12 1.1E-16 109.2 9.7 82 126-207 3-96 (105)
199 1jmt_A Splicing factor U2AF 35 99.3 1E-12 3.5E-17 112.3 5.0 72 133-205 20-103 (104)
200 3ue2_A Poly(U)-binding-splicin 99.3 6.6E-12 2.2E-16 109.7 9.4 81 127-207 19-108 (118)
201 3sde_A Paraspeckle component 1 99.3 6.2E-12 2.1E-16 125.3 10.2 80 127-207 95-178 (261)
202 1qm9_A Polypyrimidine tract-bi 99.3 7E-12 2.4E-16 119.1 9.9 77 126-207 118-196 (198)
203 2adc_A Polypyrimidine tract-bi 99.3 1.3E-11 4.3E-16 120.6 9.8 77 126-207 149-227 (229)
204 3tht_A Alkylated DNA repair pr 99.2 3.3E-11 1.1E-15 123.9 9.5 77 125-207 15-98 (345)
205 2i2y_A Fusion protein consists 99.2 5.1E-12 1.7E-16 115.1 1.7 123 158-293 3-133 (150)
206 2d9o_A DNAJ (HSP40) homolog, s 99.1 2.2E-10 7.4E-15 96.9 10.2 74 128-208 10-90 (100)
207 3s6e_A RNA-binding protein 39; 99.1 4.2E-10 1.4E-14 97.5 10.4 77 127-207 6-92 (114)
208 2dnr_A Synaptojanin-1; RRM dom 98.9 1.8E-09 6.1E-14 88.3 8.1 73 126-207 5-85 (91)
209 1owx_A Lupus LA protein, SS-B, 98.9 4.1E-09 1.4E-13 91.7 9.6 86 126-217 16-107 (121)
210 1ufw_A Synaptojanin 2; RNP dom 98.8 1.5E-08 5.1E-13 83.2 7.6 70 126-204 13-91 (95)
211 2lkz_A RNA-binding protein 5; 98.7 7.3E-09 2.5E-13 86.7 4.6 65 229-293 9-76 (95)
212 2lxi_A RNA-binding protein 10; 98.7 1.1E-08 3.8E-13 84.7 3.8 63 230-292 2-66 (91)
213 2lea_A Serine/arginine-rich sp 98.6 6.6E-09 2.2E-13 92.8 2.2 108 171-294 5-113 (135)
214 3dxb_A Thioredoxin N-terminall 98.6 6.8E-08 2.3E-12 93.4 8.2 69 139-207 140-212 (222)
215 4fxv_A ELAV-like protein 1; RN 98.6 1.3E-08 4.5E-13 85.7 2.3 62 232-293 22-84 (99)
216 3s8s_A Histone-lysine N-methyl 98.5 3.8E-08 1.3E-12 84.6 3.3 64 230-293 7-71 (110)
217 1x4e_A RNA binding motif, sing 98.5 1.4E-07 4.6E-12 76.6 6.4 65 230-294 6-71 (85)
218 1rk8_A CG8781-PA, CG8781-PA pr 98.5 2.3E-08 8E-13 92.2 1.8 117 175-293 11-137 (165)
219 3p5t_L Cleavage and polyadenyl 98.5 3.5E-08 1.2E-12 81.3 2.1 62 232-293 4-68 (90)
220 3ns6_A Eukaryotic translation 98.4 4.6E-08 1.6E-12 82.4 1.8 65 229-293 6-77 (100)
221 2dnn_A RNA-binding protein 12; 98.4 1.7E-07 5.8E-12 80.3 4.1 60 231-292 18-77 (109)
222 2fc8_A NCL protein; structure 98.4 1.9E-07 6.6E-12 78.5 3.9 64 228-293 14-77 (102)
223 2cqb_A Peptidyl-prolyl CIS-tra 98.4 3.4E-07 1.2E-11 76.9 5.5 65 229-293 12-77 (102)
224 2hgn_A Heterogeneous nuclear r 98.4 8.1E-08 2.8E-12 86.1 1.6 106 171-292 2-107 (139)
225 2x1f_A MRNA 3'-END-processing 98.4 2.2E-07 7.4E-12 77.4 3.9 63 231-293 4-67 (96)
226 2dnl_A Cytoplasmic polyadenyla 98.3 2.7E-07 9.2E-12 79.5 4.2 63 230-292 9-74 (114)
227 2lmi_A GRSF-1, G-rich sequence 98.3 3E-07 1E-11 78.3 4.4 62 230-292 12-76 (107)
228 2dnz_A Probable RNA-binding pr 98.3 3.9E-07 1.3E-11 75.5 5.0 64 230-293 6-70 (95)
229 1whw_A Hypothetical protein ri 98.3 3.3E-07 1.1E-11 76.6 4.3 64 230-293 9-73 (99)
230 1x5t_A Splicing factor 3B subu 98.3 3.1E-07 1.1E-11 76.2 4.0 65 230-294 6-72 (96)
231 2la6_A RNA-binding protein FUS 98.3 2.4E-07 8.4E-12 77.5 3.3 65 229-293 13-86 (99)
232 2cpe_A RNA-binding protein EWS 98.3 4.9E-07 1.7E-11 77.5 5.2 66 229-294 15-89 (113)
233 2dgp_A Bruno-like 4, RNA bindi 98.3 2.6E-07 9E-12 78.2 3.4 62 230-293 14-78 (106)
234 2krb_A Eukaryotic translation 98.3 1.1E-07 3.7E-12 76.7 0.9 61 231-293 3-70 (81)
235 2e5h_A Zinc finger CCHC-type a 98.3 4.7E-07 1.6E-11 74.8 4.7 65 229-293 16-81 (94)
236 2kxn_B Transformer-2 protein h 98.3 5.1E-07 1.8E-11 79.7 5.2 67 227-293 44-111 (129)
237 2dnm_A SRP46 splicing factor; 98.3 2.5E-07 8.5E-12 78.0 3.0 66 229-294 13-79 (103)
238 3md1_A Nuclear and cytoplasmic 98.3 2.4E-07 8.2E-12 74.7 2.7 63 232-294 4-67 (83)
239 1s79_A Lupus LA protein; RRM, 98.3 1.3E-07 4.6E-12 80.1 1.2 55 231-292 13-73 (103)
240 2fc9_A NCL protein; structure 98.3 3.2E-07 1.1E-11 77.0 3.5 62 229-293 15-76 (101)
241 1wg5_A Heterogeneous nuclear r 98.3 2.7E-07 9.1E-12 78.2 3.1 60 230-289 16-76 (104)
242 2j76_E EIF-4B, EIF4B, eukaryot 98.3 3.9E-07 1.3E-11 76.6 4.0 62 231-293 21-83 (100)
243 2cq0_A Eukaryotic translation 98.3 3.5E-07 1.2E-11 77.1 3.7 66 229-294 15-81 (103)
244 2dng_A Eukaryotic translation 98.3 1.7E-07 5.9E-12 79.1 1.7 64 229-293 15-78 (103)
245 2m2b_A RNA-binding protein 10; 98.3 2.8E-07 9.5E-12 81.5 3.0 64 229-293 23-89 (131)
246 2ek1_A RNA-binding protein 12; 98.3 3.2E-07 1.1E-11 76.0 3.2 64 230-293 16-80 (95)
247 2dnh_A Bruno-like 5, RNA bindi 98.3 1.9E-07 6.6E-12 78.9 1.9 66 229-294 15-80 (105)
248 2hgm_A HNRPF protein, heteroge 98.3 2.7E-07 9.3E-12 81.2 2.8 63 229-291 42-105 (126)
249 2cpy_A RNA-binding protein 12; 98.3 3.3E-07 1.1E-11 79.0 3.3 62 230-292 16-78 (114)
250 2dgs_A DAZ-associated protein 98.3 5.3E-07 1.8E-11 75.4 4.5 64 229-293 10-74 (99)
251 2cqp_A RNA-binding protein 12; 98.3 3.2E-07 1.1E-11 76.6 3.0 64 230-293 16-80 (98)
252 2d9p_A Polyadenylate-binding p 98.3 3.6E-07 1.2E-11 77.0 3.4 64 230-294 16-79 (103)
253 3mdf_A Peptidyl-prolyl CIS-tra 98.3 2.7E-07 9.3E-12 74.7 2.5 65 229-293 7-72 (85)
254 2fy1_A RNA-binding motif prote 98.3 2.5E-07 8.7E-12 80.1 2.3 62 231-293 9-71 (116)
255 2do4_A Squamous cell carcinoma 98.3 2.7E-07 9.2E-12 77.4 2.4 65 229-293 17-81 (100)
256 1wez_A HnRNP H', FTP-3, hetero 98.3 1.8E-07 6.1E-12 79.1 1.3 61 230-292 16-76 (102)
257 1wi8_A EIF-4B, eukaryotic tran 98.3 4.2E-07 1.4E-11 76.8 3.6 63 230-293 16-79 (104)
258 1wel_A RNA-binding protein 12; 98.3 1.6E-07 5.5E-12 82.2 1.0 63 230-293 26-89 (124)
259 2hgl_A HNRPF protein, heteroge 98.3 2.5E-07 8.4E-12 82.6 2.1 62 230-292 45-109 (136)
260 2mss_A Protein (musashi1); RNA 98.3 3.4E-07 1.2E-11 72.3 2.7 60 232-292 2-62 (75)
261 1x5u_A Splicing factor 3B subu 98.3 3.8E-07 1.3E-11 77.1 3.1 65 229-293 15-80 (105)
262 3n9u_C Cleavage and polyadenyl 98.2 1.6E-07 5.3E-12 86.0 0.7 62 232-293 58-122 (156)
263 2cph_A RNA binding motif prote 98.2 6E-07 2.1E-11 76.0 4.3 65 229-293 15-82 (107)
264 1x4h_A RNA-binding protein 28; 98.2 4.9E-07 1.7E-11 77.2 3.7 64 228-291 14-78 (111)
265 3ex7_B RNA-binding protein 8A; 98.2 4.9E-07 1.7E-11 79.1 3.7 66 229-294 22-88 (126)
266 1x5s_A Cold-inducible RNA-bind 98.2 4.4E-07 1.5E-11 76.3 3.2 64 229-294 12-78 (102)
267 4f25_A Polyadenylate-binding p 98.2 1.3E-07 4.4E-12 81.8 -0.2 56 232-294 8-69 (115)
268 1oo0_B CG8781-PA, drosophila Y 98.2 4.8E-07 1.7E-11 77.2 3.4 65 229-293 26-91 (110)
269 3bs9_A Nucleolysin TIA-1 isofo 98.2 2.8E-07 9.7E-12 74.9 1.8 63 231-293 8-71 (87)
270 2db1_A Heterogeneous nuclear r 98.2 2.7E-07 9.2E-12 80.2 1.8 63 230-293 18-83 (118)
271 2l9w_A U4/U6 snRNA-associated- 98.2 1E-05 3.5E-10 67.8 11.1 75 127-207 20-99 (117)
272 2cqc_A Arginine/serine-rich sp 98.2 3.7E-07 1.3E-11 75.5 2.5 66 228-293 14-80 (95)
273 2cpi_A CCR4-NOT transcription 98.2 7.3E-07 2.5E-11 76.4 4.4 64 229-294 15-87 (111)
274 1fj7_A Nucleolin RBD1, protein 98.2 1.3E-07 4.5E-12 79.4 -0.5 63 231-294 19-81 (101)
275 2div_A TRNA selenocysteine ass 98.2 3E-07 1E-11 76.8 1.7 65 229-293 9-75 (99)
276 1uaw_A Mouse-musashi-1; RNP-ty 98.2 4E-07 1.4E-11 72.2 2.2 60 232-291 3-63 (77)
277 2cpz_A CUG triplet repeat RNA- 98.2 4.6E-07 1.6E-11 78.0 2.8 64 230-293 26-90 (115)
278 1x5o_A RNA binding motif, sing 98.2 5.5E-07 1.9E-11 77.3 2.9 64 231-294 27-90 (114)
279 2do0_A HnRNP M, heterogeneous 98.2 4.5E-07 1.6E-11 77.8 2.3 65 229-293 15-79 (114)
280 3ulh_A THO complex subunit 4; 98.2 3.5E-07 1.2E-11 77.6 1.4 66 228-293 28-93 (107)
281 2nlw_A Eukaryotic translation 98.2 2.6E-07 8.9E-12 78.4 0.7 63 229-293 15-84 (105)
282 1p27_B RNA-binding protein 8A; 98.2 4E-07 1.4E-11 77.1 1.8 64 230-293 24-88 (106)
283 2cq4_A RNA binding motif prote 98.2 6.3E-07 2.1E-11 77.0 3.0 62 231-293 27-89 (114)
284 2dhg_A TRNA selenocysteine ass 98.2 3E-07 1E-11 77.6 0.8 64 230-294 10-75 (104)
285 2wbr_A GW182, gawky, LD47780P; 98.2 4.2E-07 1.5E-11 74.1 1.4 54 232-293 10-66 (89)
286 2jrs_A RNA-binding protein 39; 98.2 5.9E-07 2E-11 76.7 2.3 65 229-293 26-91 (108)
287 1x4f_A Matrin 3; structural ge 98.2 1.5E-06 5.2E-11 74.7 4.8 60 227-292 23-84 (112)
288 1fjc_A Nucleolin RBD2, protein 98.2 3.9E-07 1.3E-11 75.7 1.1 61 229-293 16-76 (96)
289 2dgw_A Probable RNA-binding pr 98.2 3.8E-07 1.3E-11 75.0 0.9 62 230-293 11-72 (91)
290 2rs2_A Musashi-1, RNA-binding 98.1 8.5E-07 2.9E-11 75.8 3.1 64 230-293 26-90 (109)
291 1x4d_A Matrin 3; structural ge 98.1 1.3E-06 4.5E-11 73.8 4.2 60 228-293 14-75 (102)
292 3r27_A HnRNP L, heterogeneous 98.1 9.9E-07 3.4E-11 74.1 3.4 61 227-293 19-80 (100)
293 2cqd_A RNA-binding region cont 98.1 6.9E-07 2.4E-11 77.0 2.5 68 229-296 17-85 (116)
294 2kt5_A RNA and export factor-b 98.1 8.5E-07 2.9E-11 77.5 3.1 64 229-293 35-99 (124)
295 2khc_A Testis-specific RNP-typ 98.1 6.6E-07 2.3E-11 77.3 2.3 62 232-293 43-105 (118)
296 1x4a_A Splicing factor, argini 98.1 7.7E-07 2.6E-11 75.8 2.7 63 229-293 22-84 (109)
297 2ywk_A Putative RNA-binding pr 98.1 4E-07 1.4E-11 75.4 0.8 58 230-293 17-80 (95)
298 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.1 1.1E-06 3.9E-11 78.0 3.8 65 229-293 63-128 (140)
299 2dgo_A Cytotoxic granule-assoc 98.1 5.5E-07 1.9E-11 77.5 1.5 64 230-293 16-80 (115)
300 2dgv_A HnRNP M, heterogeneous 98.1 7.2E-07 2.5E-11 73.4 1.9 63 230-294 9-72 (92)
301 2cpx_A Hypothetical protein FL 98.1 5.6E-07 1.9E-11 77.4 1.2 66 228-293 24-90 (115)
302 1p1t_A Cleavage stimulation fa 98.1 4.6E-07 1.6E-11 76.4 0.7 63 231-293 10-73 (104)
303 2cq1_A PTB-like protein L; RRM 98.1 2E-06 6.9E-11 72.5 4.5 60 227-292 13-73 (101)
304 2dha_A FLJ20171 protein; RRM d 98.1 5.7E-07 2E-11 78.8 1.1 60 230-289 24-87 (123)
305 2ki2_A SS-DNA binding protein 98.1 5.2E-07 1.8E-11 74.0 0.7 61 232-293 4-65 (90)
306 2cq3_A RNA-binding protein 9; 98.1 1.3E-06 4.4E-11 73.5 3.2 64 229-294 15-79 (103)
307 2jvr_A Nucleolar protein 3; RN 98.1 1.4E-06 4.7E-11 74.9 3.3 56 232-293 31-90 (111)
308 2cpf_A RNA binding motif prote 98.1 4.6E-07 1.6E-11 75.5 0.3 62 230-293 6-73 (98)
309 3s7r_A Heterogeneous nuclear r 98.1 7.4E-07 2.5E-11 72.5 1.4 63 229-291 11-74 (87)
310 1sjq_A Polypyrimidine tract-bi 98.1 1.1E-06 3.6E-11 74.7 2.3 53 229-292 16-74 (105)
311 2ad9_A Polypyrimidine tract-bi 98.1 1.5E-06 5E-11 75.6 3.2 61 227-293 29-90 (119)
312 3ucg_A Polyadenylate-binding p 98.1 6.7E-07 2.3E-11 73.0 0.9 63 231-294 8-71 (89)
313 2lcw_A RNA-binding protein FUS 97.3 4.7E-07 1.6E-11 78.1 0.0 65 230-294 8-81 (116)
314 2a3j_A U1 small nuclear ribonu 98.1 7.5E-07 2.6E-11 78.5 1.2 63 228-293 28-95 (127)
315 3q2s_C Cleavage and polyadenyl 98.1 3.9E-07 1.3E-11 88.7 -0.7 62 232-293 71-135 (229)
316 4a8x_A RNA-binding protein wit 98.1 8.4E-07 2.9E-11 72.2 1.4 63 232-294 7-71 (88)
317 1h2v_Z 20 kDa nuclear CAP bind 98.1 9.1E-07 3.1E-11 80.5 1.7 66 228-293 38-104 (156)
318 2err_A Ataxin-2-binding protei 98.1 1.8E-06 6.1E-11 73.7 3.3 64 229-293 29-92 (109)
319 1x4b_A Heterogeneous nuclear r 98.0 1.7E-06 5.9E-11 74.5 2.6 61 231-292 29-90 (116)
320 3lqv_A PRE-mRNA branch site pr 98.0 1.8E-06 6E-11 74.2 2.6 63 229-293 8-70 (115)
321 1iqt_A AUF1, heterogeneous nuc 98.0 1.4E-06 4.8E-11 68.7 1.8 58 232-289 2-60 (75)
322 2dis_A Unnamed protein product 98.0 1.2E-06 3.9E-11 74.6 1.4 60 231-291 10-73 (109)
323 1u6f_A Tcubp1, RNA-binding pro 98.0 6.8E-07 2.3E-11 79.6 -0.2 58 231-293 44-107 (139)
324 1wex_A Hypothetical protein (r 98.0 3.2E-06 1.1E-10 71.7 3.9 60 227-292 13-73 (104)
325 2e5j_A Methenyltetrahydrofolat 98.0 1.7E-06 6E-11 72.0 2.0 59 229-293 19-79 (97)
326 2dh8_A DAZ-associated protein 98.0 1.1E-06 3.9E-11 74.2 0.8 63 230-293 17-80 (105)
327 3egn_A RNA-binding protein 40; 98.0 9E-07 3.1E-11 79.3 0.0 67 228-294 44-116 (143)
328 1nu4_A U1A RNA binding domain; 98.0 9.5E-07 3.2E-11 73.4 -0.2 63 229-293 8-74 (97)
329 2f3j_A RNA and export factor b 98.0 2.2E-06 7.6E-11 79.9 2.2 62 231-293 90-152 (177)
330 2cqg_A TDP-43, TAR DNA-binding 98.0 2.5E-06 8.7E-11 71.7 2.3 61 229-289 15-76 (103)
331 2dgx_A KIAA0430 protein; RRM d 98.0 1.8E-06 6.1E-11 71.9 1.3 55 231-293 11-75 (96)
332 2jwn_A Embryonic polyadenylate 97.9 1.2E-06 4.1E-11 76.4 0.2 62 231-293 38-100 (124)
333 2cqi_A Nucleolysin TIAR; RNA r 97.9 2.1E-06 7E-11 72.3 1.5 59 229-294 15-79 (103)
334 2cq2_A Hypothetical protein LO 97.9 2.3E-06 7.8E-11 73.7 1.5 61 227-293 23-86 (114)
335 1wg1_A KIAA1579 protein, homol 97.9 3.7E-06 1.3E-10 68.7 2.5 56 232-293 8-63 (88)
336 3beg_B Splicing factor, argini 97.9 3.3E-06 1.1E-10 72.8 1.6 57 231-293 18-74 (115)
337 1why_A Hypothetical protein ri 97.9 5.9E-06 2E-10 68.6 2.8 61 228-294 16-77 (97)
338 2la4_A Nuclear and cytoplasmic 97.8 5.2E-06 1.8E-10 69.5 2.2 59 230-293 28-86 (101)
339 2cqh_A IGF-II mRNA-binding pro 97.8 3.8E-06 1.3E-10 69.2 1.3 57 230-292 9-66 (93)
340 2jvo_A Nucleolar protein 3; nu 97.8 7.4E-06 2.5E-10 69.8 3.1 60 228-294 30-89 (108)
341 1whx_A Hypothetical protein ri 97.8 7.5E-06 2.6E-10 70.1 3.0 58 230-293 11-69 (111)
342 1x4c_A Splicing factor, argini 97.8 3.5E-06 1.2E-10 71.7 0.9 56 231-293 17-73 (108)
343 2hvz_A Splicing factor, argini 97.8 4.8E-06 1.6E-10 69.7 1.3 52 232-293 3-60 (101)
344 2cpj_A Non-POU domain-containi 97.8 9.1E-06 3.1E-10 67.7 3.0 60 230-294 16-75 (99)
345 2kvi_A Nuclear polyadenylated 97.8 7.5E-06 2.6E-10 68.0 2.5 58 229-294 10-69 (96)
346 2voo_A Lupus LA protein; RNA-b 97.8 7.2E-06 2.5E-10 77.5 2.5 100 179-292 63-172 (193)
347 2xnq_A Nuclear polyadenylated 97.8 7.8E-06 2.7E-10 68.1 2.3 58 229-293 22-80 (97)
348 2xs2_A Deleted in azoospermia- 97.8 8.5E-07 2.9E-11 74.5 -3.9 52 231-288 11-68 (102)
349 2cpd_A Apobec-1 stimulating pr 97.7 1.3E-05 4.4E-10 66.9 3.1 58 228-293 14-74 (99)
350 2dnq_A RNA-binding protein 4B; 97.7 8.6E-06 3E-10 66.6 1.6 57 230-293 9-65 (90)
351 3d2w_A TAR DNA-binding protein 97.7 1.8E-05 6E-10 64.9 3.3 52 230-285 12-63 (89)
352 2dgt_A RNA-binding protein 30; 97.7 1.5E-05 5.1E-10 65.5 2.8 57 230-293 11-67 (92)
353 2e5g_A U6 snRNA-specific termi 97.7 9.7E-06 3.3E-10 67.0 1.7 57 231-293 10-67 (94)
354 2hzc_A Splicing factor U2AF 65 97.7 5E-06 1.7E-10 67.4 -0.6 62 231-293 8-75 (87)
355 1wf1_A RNA-binding protein RAL 97.6 1.1E-05 3.6E-10 68.8 1.2 54 230-293 28-85 (110)
356 1x4g_A Nucleolysin TIAR; struc 97.6 1.2E-05 4.2E-10 68.3 1.6 53 230-293 26-84 (109)
357 2dgu_A Heterogeneous nuclear r 97.6 1.6E-05 5.3E-10 66.9 2.1 55 229-293 11-68 (103)
358 2ytc_A PRE-mRNA-splicing facto 97.6 1.6E-05 5.5E-10 64.1 1.7 58 229-292 12-71 (85)
359 3zzy_A Polypyrimidine tract-bi 97.6 2.2E-05 7.5E-10 69.1 2.4 58 232-294 31-90 (130)
360 2j8a_A Histone-lysine N-methyl 97.6 7.7E-06 2.6E-10 71.4 -0.9 57 232-288 5-74 (136)
361 2dnp_A RNA-binding protein 14; 97.6 2.3E-05 8E-10 64.0 2.0 54 230-293 10-66 (90)
362 1wf0_A TDP-43, TAR DNA-binding 97.5 3.3E-05 1.1E-09 62.8 2.8 52 231-286 7-58 (88)
363 1sjr_A Polypyrimidine tract-bi 97.5 1.7E-05 5.8E-10 72.6 1.1 59 232-294 49-108 (164)
364 2diu_A KIAA0430 protein; struc 97.5 3.3E-05 1.1E-09 63.7 2.4 52 232-293 12-69 (96)
365 1wey_A Calcipressin 1; structu 97.5 0.00024 8.2E-09 59.3 7.3 75 127-207 4-83 (104)
366 1x5p_A Negative elongation fac 97.5 4.6E-05 1.6E-09 63.2 3.0 56 230-293 16-72 (97)
367 3tht_A Alkylated DNA repair pr 97.5 4.2E-05 1.4E-09 78.5 2.8 62 226-293 15-79 (345)
368 2e5i_A Heterogeneous nuclear r 97.4 5E-05 1.7E-09 66.4 2.3 56 232-293 28-85 (124)
369 2pe8_A Splicing factor 45; RRM 97.4 6.4E-05 2.2E-09 63.7 2.7 63 227-293 6-79 (105)
370 2bz2_A Negative elongation fac 97.4 9.2E-05 3.2E-09 64.3 3.5 58 229-293 39-96 (121)
371 3u1l_A PRE-mRNA-splicing facto 97.2 9.9E-05 3.4E-09 71.9 1.6 57 230-294 135-203 (240)
372 1jmt_A Splicing factor U2AF 35 97.1 4.7E-05 1.6E-09 64.3 -1.0 30 264-293 62-91 (104)
373 3v4m_A Splicing factor U2AF 65 97.0 0.00042 1.4E-08 58.6 3.7 27 267-293 56-82 (105)
374 2d9o_A DNAJ (HSP40) homolog, s 96.9 0.00016 5.6E-09 60.6 -0.0 50 239-293 27-77 (100)
375 2dit_A HIV TAT specific factor 96.8 0.00044 1.5E-08 58.9 2.5 64 226-293 12-87 (112)
376 2e44_A Insulin-like growth fac 96.8 0.00019 6.5E-09 59.1 0.1 59 230-293 16-77 (96)
377 1uw4_A UPF3X; nonsense mediate 96.7 0.0059 2E-07 49.9 8.1 68 129-196 2-71 (91)
378 1whv_A Poly(A)-specific ribonu 96.7 0.0092 3.2E-07 48.9 9.0 54 128-190 16-69 (100)
379 2dhx_A Poly (ADP-ribose) polym 96.3 0.018 6E-07 47.8 8.4 68 127-203 7-79 (104)
380 3ue2_A Poly(U)-binding-splicin 95.7 0.0045 1.5E-07 53.3 2.7 65 228-293 19-94 (118)
381 1wwh_A Nucleoporin 35, nucleop 95.6 0.038 1.3E-06 47.2 8.0 70 127-204 23-93 (119)
382 3ctr_A Poly(A)-specific ribonu 95.5 0.014 4.9E-07 48.0 4.8 53 130-191 8-60 (101)
383 1owx_A Lupus LA protein, SS-B, 94.7 0.016 5.5E-07 50.0 3.0 56 228-291 17-77 (121)
384 3s6e_A RNA-binding protein 39; 94.6 0.019 6.5E-07 49.0 3.2 25 269-293 54-78 (114)
385 2l08_A Regulator of nonsense t 94.2 0.056 1.9E-06 44.5 5.0 68 128-195 9-78 (97)
386 3p3d_A Nucleoporin 53; structu 93.7 0.099 3.4E-06 45.3 5.8 76 128-205 7-96 (132)
387 3pq1_A Poly(A) RNA polymerase; 92.6 0.063 2.2E-06 56.9 3.6 55 128-188 53-107 (464)
388 3dxb_A Thioredoxin N-terminall 92.6 0.064 2.2E-06 50.9 3.4 31 263-293 168-198 (222)
389 3d45_A Poly(A)-specific ribonu 82.1 3.4 0.00012 44.3 8.6 55 128-191 440-494 (507)
390 2dnr_A Synaptojanin-1; RRM dom 74.7 1.1 3.9E-05 36.2 1.6 21 272-293 51-71 (91)
391 1ufw_A Synaptojanin 2; RNP dom 67.7 2.4 8.3E-05 34.5 2.0 20 273-293 61-80 (95)
392 2g0c_A ATP-dependent RNA helic 52.0 30 0.001 26.2 5.9 67 130-205 2-74 (76)
393 4e8u_A Putative uncharacterize 25.8 1.1E+02 0.0036 27.6 5.7 55 131-188 15-81 (172)
394 1whv_A Poly(A)-specific ribonu 23.3 67 0.0023 26.1 3.5 52 229-291 16-70 (100)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=4.8e-25 Score=214.00 Aligned_cols=147 Identities=18% Similarity=0.283 Sum_probs=124.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.+||||||||+++|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..||+..+.|+.|.|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDR 280 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~ 280 (567)
....... .....+||+||+..+++++|.+++. .+.+.. ..+.++|||||+|.+.
T Consensus 94 ~~~~~~~-------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~-------d~~~~~g~~fV~f~~~ 153 (213)
T 4f02_A 94 RDPSLRK-------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-------DENGSKGYGFVHFETQ 153 (213)
T ss_dssp CCTHHHH-------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE-------ETTEEEEEEEEEESSH
T ss_pred ccccccc-------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeec-------cCCCCceEEEEEeCCH
Confidence 5422211 1112359999999999999999843 222222 1244799999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 281 KADQEALEKLTCM 293 (567)
Q Consensus 281 e~a~kAle~ln~~ 293 (567)
++|.+||+.||+.
T Consensus 154 ~~a~~Ai~~lng~ 166 (213)
T 4f02_A 154 EAAERAIEKMNGM 166 (213)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999975
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=3.3e-24 Score=198.26 Aligned_cols=152 Identities=13% Similarity=0.184 Sum_probs=127.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
.... ......+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+
T Consensus 81 ~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ 145 (167)
T 1fxl_A 81 PSSA---------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEE 145 (167)
T ss_dssp CCCG---------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc---------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHH
Confidence 5321 11223369999999999999998833 1111111111225678999999999999999999
Q ss_pred HHHHHHHH
Q 008385 286 ALEKLTCM 293 (567)
Q Consensus 286 Ale~ln~~ 293 (567)
|+..||+.
T Consensus 146 A~~~l~g~ 153 (167)
T 1fxl_A 146 AIKGLNGQ 153 (167)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999985
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=3.2e-24 Score=198.90 Aligned_cols=152 Identities=16% Similarity=0.241 Sum_probs=128.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|+.||.|.+|.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 47899999999999999999999999999999999998899999999999999999999999999999999999999886
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
.... ......+||+||+..+++++|.++ .+...+.......+..+|.++|||||+|.+.++|.+
T Consensus 82 ~~~~---------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE---------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS---------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc---------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 5311 122334699999999999999998 432112111111234578999999999999999999
Q ss_pred HHHHHHHH
Q 008385 286 ALEKLTCM 293 (567)
Q Consensus 286 Ale~ln~~ 293 (567)
|+..||+.
T Consensus 147 A~~~l~g~ 154 (168)
T 1b7f_A 147 AISALNNV 154 (168)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 99999985
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-23 Score=194.66 Aligned_cols=151 Identities=16% Similarity=0.239 Sum_probs=124.5
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
++|||+|||.++|+++|+.+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999986 6889999999999999999999999999999999999987553
Q ss_pred HHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCC-CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHH
Q 008385 209 REYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPT-KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEAL 287 (567)
Q Consensus 209 ~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~-ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAl 287 (567)
.. ........+||+||+..+++++|.+++ +...+.......+..+|.++|||||+|.+.++|.+|+
T Consensus 80 ~~-------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~ 146 (166)
T 3md3_A 80 QQ-------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAM 146 (166)
T ss_dssp CC-------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHH
T ss_pred CC-------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHH
Confidence 11 122233446999999999999999884 3111111111123578999999999999999999999
Q ss_pred HHHHHH
Q 008385 288 EKLTCM 293 (567)
Q Consensus 288 e~ln~~ 293 (567)
..||+.
T Consensus 147 ~~l~g~ 152 (166)
T 3md3_A 147 DSMQGQ 152 (166)
T ss_dssp HHHTTC
T ss_pred HHhCCC
Confidence 999875
No 5
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=1.1e-23 Score=203.59 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=127.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999998875
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
........... ..........+||+||+..+++++|.++ .+...+.......+..+|.++|||||+|.+.++|.+
T Consensus 107 ~~~~~~~~~~~----~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~ 182 (216)
T 2qfj_A 107 NIGQAQPIIDQ----LAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQD 182 (216)
T ss_dssp CCGGGHHHHHH----HHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred Cccccchhhhh----hhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHH
Confidence 54221111100 0011223445799999999999999998 432112111111235689999999999999999999
Q ss_pred HHHHHHHH
Q 008385 286 ALEKLTCM 293 (567)
Q Consensus 286 Ale~ln~~ 293 (567)
|+..||+.
T Consensus 183 A~~~l~g~ 190 (216)
T 2qfj_A 183 AVSSMNLF 190 (216)
T ss_dssp HHHHHTTC
T ss_pred HHHHccCC
Confidence 99999975
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=2.2e-23 Score=198.34 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=123.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||.. ++..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34578999999999999999999999999999999999999999999999999999999999985 99999999999998
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKAD 283 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a 283 (567)
+........ .........+||+||+..+++++|.+++..++ +.......+..+|.++|||||+|.+.++|
T Consensus 89 ~~~~~~~~~---------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 89 AVSREDSQR---------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCC--------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred ccCcccccc---------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 865422110 01112234469999999999999999844111 11111112356899999999999999999
Q ss_pred HHHHHH
Q 008385 284 QEALEK 289 (567)
Q Consensus 284 ~kAle~ 289 (567)
.+||..
T Consensus 160 ~~A~~~ 165 (196)
T 1l3k_A 160 DKIVIQ 165 (196)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999975
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.89 E-value=1.4e-23 Score=195.83 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=123.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCC--CCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNG--TPKGFGFCEFESAEGVLRALRLLNKFNID---GQELM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg--~~kg~aFVef~~~~~A~~Ai~~Lng~~i~---gr~l~ 201 (567)
..++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+| .++|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 47899999999999999999999999999999999998777 89999999999999999999999998876 67777
Q ss_pred EEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEE
Q 008385 202 LKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVV 275 (567)
Q Consensus 202 V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV 275 (567)
|.++..... .......+||+||+..+++++|++++. ++.+.. +.+|.++|||||
T Consensus 82 ~~~~~~~~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~~g~~~g~afV 141 (175)
T 3nmr_A 82 MKPADSEKN--------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR------GPDGLSRGCAFV 141 (175)
T ss_dssp EEECGGGCC--------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE------CTTSCEEEEEEE
T ss_pred Ecccccccc--------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE------CCCCCEEEEEEE
Confidence 776654311 111233469999999999999998833 222333 346899999999
Q ss_pred EeCCHHHHHHHHHHHHHH
Q 008385 276 TEEDRKADQEALEKLTCM 293 (567)
Q Consensus 276 ~f~~~e~a~kAle~ln~~ 293 (567)
+|.+.++|.+|+..||+.
T Consensus 142 ~f~~~~~A~~A~~~l~g~ 159 (175)
T 3nmr_A 142 TFTTRAMAQTAIKAMHQA 159 (175)
T ss_dssp EESSHHHHHHHHHHHTTS
T ss_pred EECCHHHHHHHHHHhcCC
Confidence 999999999999999974
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.89 E-value=2.2e-23 Score=193.16 Aligned_cols=148 Identities=21% Similarity=0.275 Sum_probs=122.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+. ++..|+|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 4679999999998876
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
..... .....+||+||+..+++++|.++ .+...+.......+..+|.++|||||+|.+.++|.+
T Consensus 80 ~~~~~---------------~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 144 (167)
T 2cjk_A 80 PRDEQ---------------DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDR 144 (167)
T ss_dssp CHHHH---------------HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHH
T ss_pred chhhc---------------cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 54221 11223699999999999999988 332112111112235689999999999999999999
Q ss_pred HHHHHHH
Q 008385 286 ALEKLTC 292 (567)
Q Consensus 286 Ale~ln~ 292 (567)
|++ +++
T Consensus 145 A~~-~~~ 150 (167)
T 2cjk_A 145 VCQ-NKF 150 (167)
T ss_dssp HHH-CSE
T ss_pred HHh-CCC
Confidence 997 544
No 9
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=7e-23 Score=219.19 Aligned_cols=84 Identities=18% Similarity=0.393 Sum_probs=79.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..+.++|||+|||+.||+.+|..+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||+.|+|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 179 a~~~ 182 (437)
T 3pgw_S 179 ERGR 182 (437)
T ss_pred eCCC
Confidence 8753
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.88 E-value=4.6e-23 Score=192.87 Aligned_cols=150 Identities=16% Similarity=0.229 Sum_probs=124.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+|+++|+.+|..||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 446899999999999999999999999998877 344455689999999999999999999995 999999999999998
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQ 284 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~ 284 (567)
+..... ........+||+||+..+++++|++++..++.+... ..+|.++|||||+|.+.++|.
T Consensus 88 ~~~~~~-------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 88 PKGRDS-------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAE 150 (175)
T ss_dssp CCCSSC-------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHH
T ss_pred CCCccc-------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHH
Confidence 865311 111233446999999999999999996643322221 567899999999999999999
Q ss_pred HHHHHHHHH
Q 008385 285 EALEKLTCM 293 (567)
Q Consensus 285 kAle~ln~~ 293 (567)
+|+..||+.
T Consensus 151 ~A~~~l~g~ 159 (175)
T 1fje_B 151 KNLEEKQGA 159 (175)
T ss_dssp HHHHHHTEE
T ss_pred HHHHHhCCC
Confidence 999999874
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.88 E-value=8.3e-23 Score=197.16 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=120.1
Q ss_pred CCceEEEcCCC-CCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIA-PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp-~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
+.++|||+||| +.+++++|+.+|+.||.|.+|+|+.+ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred hhhHHHH-------------Hhhhhhhh-h--------ccccccccccccccCCCcccchhhhcCCCC---CC--ccccc
Q 008385 206 QATREYL-------------ERYVDKKT-E--------NTKKLKETQDAGAGKEDESVQSVEKNEPTK---SP--ENLKD 258 (567)
Q Consensus 206 ~~~~~~~-------------~~~~~~k~-~--------~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k---s~--~~~k~ 258 (567)
....... ..+..... . ......+...+||+||+.++++++|++++. .+ ..++.
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 6421100 00000000 0 000012334579999999999999999943 22 11111
Q ss_pred CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 259 NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 259 ~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
. ...|.++|||||+|.+.++|.+||..||+.
T Consensus 158 ~----~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~ 188 (205)
T 3tyt_A 158 F----SGKSERSSSGLLEWDSKSDALETLGFLNHY 188 (205)
T ss_dssp C----SCCSSSSEEEEEECSSHHHHHHHHHHHTTC
T ss_pred E----cCCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 1 122566799999999999999999999985
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.87 E-value=9.7e-22 Score=198.63 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=128.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 35799999999999999999999999999999999998999999999999999999999999999999999999999986
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCccc-chhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESV-QSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~-~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
.... .........+||+||+..+ ++++|.+++...+.+.......+.+|.++|||||+|.+.++|.+
T Consensus 174 ~~~~------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQL------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGC------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCC------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 6321 0111233446999999995 99999998542221111111124579999999999999999999
Q ss_pred HHHHHHHHH
Q 008385 286 ALEKLTCMV 294 (567)
Q Consensus 286 Ale~ln~~i 294 (567)
|+..||+..
T Consensus 242 A~~~l~g~~ 250 (284)
T 3smz_A 242 AQQQADGLS 250 (284)
T ss_dssp HHHHHTTCE
T ss_pred HHHHhCCCc
Confidence 999999853
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=7.4e-22 Score=197.53 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=117.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+++|+++|+.+|+.||.|..|.|..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 45789999999999999999999999999999999654 699999999999999999999999999999999987
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCC
Q 008385 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEED 279 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~ 279 (567)
.. ...+||+||+..+++++|.+++. ++.+.. +.+|.++|||||+|.+
T Consensus 94 ~~---------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~------~~~g~~~g~afV~f~~ 146 (261)
T 3sde_A 94 TH---------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVV------DDRGRATGKGFVEFAA 146 (261)
T ss_dssp CC---------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE------ETTSCEEEEEEEEESS
T ss_pred cc---------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeee------CCCCCcCcEEEEEeCC
Confidence 54 22369999999999999998843 222222 3589999999999999
Q ss_pred HHHHHHHHHHHHH
Q 008385 280 RKADQEALEKLTC 292 (567)
Q Consensus 280 ~e~a~kAle~ln~ 292 (567)
.++|.+||..||+
T Consensus 147 ~~~A~~A~~~l~~ 159 (261)
T 3sde_A 147 KPPARKALERCGD 159 (261)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999965
No 14
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.85 E-value=2.3e-21 Score=195.71 Aligned_cols=161 Identities=10% Similarity=0.139 Sum_probs=121.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHH----HHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
..+.++|||+|||+.+++++|+ .+|+.||.|..|.|+. +|.++|||||+|.+.++|..||..|||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4568999999999999999966 9999999999999875 78999999999999999999999999999999999
Q ss_pred EEEEchhhHHHHHhhhh----hhhh-------------------------------------------------------
Q 008385 201 MLKVDQATREYLERYVD----KKTE------------------------------------------------------- 221 (567)
Q Consensus 201 ~V~~a~~~~~~~~~~~~----~k~~------------------------------------------------------- 221 (567)
.|.++......+..... ....
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998654432111000 0000
Q ss_pred -------------------------------------ccccccccccccccCCCcccchhhhcCCCC-CCcccccCCCCC
Q 008385 222 -------------------------------------NTKKLKETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGN 263 (567)
Q Consensus 222 -------------------------------------~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~ 263 (567)
..........+||+||+..+++++|++++. ...+.... .
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~-~-- 239 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR-L-- 239 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEE-E--
Confidence 000111234579999999999999999944 11111100 0
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 264 ~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+ .+|||||+|.+.++|.+||..||+.
T Consensus 240 -~~~-~~g~afV~f~~~~~A~~A~~~l~g~ 267 (282)
T 3pgw_A 240 -VPG-RHDIAFVEFDNEVQAGAARDALQGF 267 (282)
T ss_pred -ecC-CCcEEEEEeCCHHHHHHHHHHcCCc
Confidence 011 1689999999999999999999984
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.84 E-value=2.5e-21 Score=180.22 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=115.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhC----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~----G-------~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
+.++|||+|||+.+|+++|+.+|+.| | .|..+.+. .++|||||+|.+.++|..|+ .|||..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666653 45799999999999999999 7999999
Q ss_pred CCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEE
Q 008385 196 DGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGV 274 (567)
Q Consensus 196 ~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgF 274 (567)
+|+.|.|.++.... .......+||+||+..+++++|.++ .+...+.......+..+|.++||||
T Consensus 76 ~g~~i~v~~~~~~~---------------~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~af 140 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQ---------------PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 140 (172)
T ss_dssp TTEECEEECCSSCC---------------CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEE
T ss_pred cCceeeecCCcccC---------------CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEE
Confidence 99999998765421 1112344699999999999999988 3311111111112246899999999
Q ss_pred EEeCCHHHHHHHHHHHHHH
Q 008385 275 VTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 275 V~f~~~e~a~kAle~ln~~ 293 (567)
|+|.+.++|.+|+..||+.
T Consensus 141 V~f~~~~~A~~A~~~l~g~ 159 (172)
T 2g4b_A 141 CEYVDINVTDQAIAGLNGM 159 (172)
T ss_dssp EEESSTTHHHHHHHHHTTC
T ss_pred EEeCCHHHHHHHHHHcCCC
Confidence 9999999999999999874
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.84 E-value=2.5e-22 Score=191.32 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=116.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC-----------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-----------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-----------~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
..++|||+|||+.+|+++|+.+|+.|| .|..+.+ +.++|||||+|.+.++|..|| .|||..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 478999999999999999999999995 4444444 566899999999999999999 7999999
Q ss_pred CCeEEEEEEchhhHHHHHhhhhh-----hhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCC
Q 008385 196 DGQELMLKVDQATREYLERYVDK-----KTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDP 269 (567)
Q Consensus 196 ~gr~l~V~~a~~~~~~~~~~~~~-----k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~ 269 (567)
+|+.|.|.++............. .............+||+||+..+++++|.+++..++ +.......+..+|.+
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 99999999875531110000000 000001112334579999999999999998833111 111111122458999
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 008385 270 TNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 270 kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+|||||+|.+.++|.+|+..||+.
T Consensus 156 ~g~afV~f~~~~~a~~A~~~l~g~ 179 (198)
T 2yh0_A 156 KGYAFCEYVDINVTDQAIAGLNGM 179 (198)
T ss_dssp EEEEEEEESSSSHHHHHHHHHTTC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCC
Confidence 999999999999999999999884
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.84 E-value=4.7e-21 Score=194.36 Aligned_cols=152 Identities=13% Similarity=0.147 Sum_probs=117.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..++|||+|||+.+++++|+.+|+.|| .|..|.|+.++ .|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR-FNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 478999999999999999999999999 99999999886 4889999999999999999999999999999999999998
Q ss_pred hhhHHHHHhhhhhhhhccccccccccccccCCCcc-cchhhhcCCCC------CCcccccCCCCCCC-CCCCCceEEEEe
Q 008385 206 QATREYLERYVDKKTENTKKLKETQDAGAGKEDES-VQSVEKNEPTK------SPENLKDNETGNKE-SHDPTNFGVVTE 277 (567)
Q Consensus 206 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~-~~e~~l~e~~k------s~~~~k~~~~~~~~-~g~~kGfgFV~f 277 (567)
......... .........+||+||+.. +++++|.+++. ++.+.. +.. +|.++|||||+|
T Consensus 195 ~~~~~~~~~--------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~-----~~~~tg~~~g~afV~F 261 (292)
T 2ghp_A 195 NPLEKSKRT--------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA-----GQKEHSFNNCCAFMVF 261 (292)
T ss_dssp CCC-----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS-----CCC---CCCEEEEEEE
T ss_pred CCCcccccc--------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe-----cCCcCCCCceEEEEEe
Confidence 764322111 012223344799999999 99999998833 222222 122 599999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q 008385 278 EDRKADQEALEKLTCM 293 (567)
Q Consensus 278 ~~~e~a~kAle~ln~~ 293 (567)
.+.++|.+|+ .||+.
T Consensus 262 ~~~~~A~~A~-~l~g~ 276 (292)
T 2ghp_A 262 ENKDSAERAL-QMNRS 276 (292)
T ss_dssp SSHHHHHHHG-GGTTE
T ss_pred CCHHHHHHHH-HhcCC
Confidence 9999999999 99885
No 18
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.83 E-value=7.3e-21 Score=186.51 Aligned_cols=158 Identities=11% Similarity=0.086 Sum_probs=119.1
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+.++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++ +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3579999999999 99999999999999999999998874 79999999999999999999999999999999998
Q ss_pred chhhHHHHHhhhhh-----------h---------hhccccccccccccccCCCcccchhhhcCCCC-CC-cccccCCCC
Q 008385 205 DQATREYLERYVDK-----------K---------TENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SP-ENLKDNETG 262 (567)
Q Consensus 205 a~~~~~~~~~~~~~-----------k---------~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~-~~~k~~~~~ 262 (567)
+............. . ............+||+||+..+++++|++++. .. .+......
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~- 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF- 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-
Confidence 86431111000000 0 00000112245579999999999999998833 22 11111000
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 263 NKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 263 ~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+|||||+|.+.++|.+|+..||+.
T Consensus 186 ----~~~~g~afV~f~~~~~A~~Ai~~l~g~ 212 (229)
T 2adc_A 186 ----QKDRKMALIQMGSVEEAVQALIDLHNH 212 (229)
T ss_dssp ----SSSTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred ----ECCCcEEEEEECCHHHHHHHHHHHCCC
Confidence 124799999999999999999999984
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.83 E-value=1.7e-20 Score=189.48 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=116.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+++|+++|+.+|+.|| |.+|.+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 468999999999999999999999999 999987 5678999999999999999999999999999999998753
Q ss_pred hhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 207 ATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 207 ~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
. ...+||+||+..+++++|.+++...+ +.......+..+|.++|||||+|.+.++|..
T Consensus 94 ~---------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 T---------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp C---------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred C---------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 2 12369999999999999998833111 1111111235689999999999999999999
Q ss_pred HHHHHHHH
Q 008385 286 ALEKLTCM 293 (567)
Q Consensus 286 Ale~ln~~ 293 (567)
|+..|++.
T Consensus 153 A~~~l~~~ 160 (284)
T 3smz_A 153 AKSDLLGK 160 (284)
T ss_dssp HHHHHTTC
T ss_pred HHHHhCCC
Confidence 99999985
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.82 E-value=2.2e-20 Score=189.45 Aligned_cols=143 Identities=15% Similarity=0.143 Sum_probs=113.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++. .++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSH 114 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEE
Confidence 44689999999999999999999999999999999999853 257999999999999999996 899999999999987
Q ss_pred chhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC-CC-cccccCCCCCCCCCCCCceEEEEeCCHHH
Q 008385 205 DQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK-SP-ENLKDNETGNKESHDPTNFGVVTEEDRKA 282 (567)
Q Consensus 205 a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~ 282 (567)
+. ...+||+||+..+++++|.+++. .. .+.. ........|.++|||||+|.+.++
T Consensus 115 ~~----------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~-v~i~~~~~~~~~g~afV~f~~~~~ 171 (292)
T 2ghp_A 115 LT----------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALS-IRLPSLRFNTSRRFAYIDVTSKED 171 (292)
T ss_dssp CC----------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCE-EECC-------CCEEEEECSSHHH
T ss_pred CC----------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEE-EEEEeCCCCCcceEEEEEECCHHH
Confidence 52 23369999999999999998833 11 1111 111123448899999999999999
Q ss_pred HHHHHHHHHHH
Q 008385 283 DQEALEKLTCM 293 (567)
Q Consensus 283 a~kAle~ln~~ 293 (567)
|..|+..||+.
T Consensus 172 a~~A~~~l~g~ 182 (292)
T 2ghp_A 172 ARYCVEKLNGL 182 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHhCCC
Confidence 99999999875
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.81 E-value=1.2e-20 Score=180.18 Aligned_cols=156 Identities=12% Similarity=0.094 Sum_probs=117.7
Q ss_pred CceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 128 QTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 128 ~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
.++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++ +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 68999999999 99999999999999999999998864 7899999999999999999999999999999999886
Q ss_pred hhHHHHHhhhhh--------------hhh------ccccccccccccccCCCcccchhhhcCCCC-CC-cccccCCCCCC
Q 008385 207 ATREYLERYVDK--------------KTE------NTKKLKETQDAGAGKEDESVQSVEKNEPTK-SP-ENLKDNETGNK 264 (567)
Q Consensus 207 ~~~~~~~~~~~~--------------k~~------~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k-s~-~~~k~~~~~~~ 264 (567)
............ ... ..........+||+||+..+++++|.+++. .. .+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~--- 154 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF--- 154 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES---
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE---
Confidence 532111000000 000 000112345579999999999999998833 21 11111000
Q ss_pred CCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 265 ESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 265 ~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+|||||+|.+.++|.+|+..||+.
T Consensus 155 --~~~~g~afV~f~~~~~A~~A~~~l~g~ 181 (198)
T 1qm9_A 155 --QKDRKMALIQMGSVEEAVQALIDLHNH 181 (198)
T ss_dssp --STTSSCEEEECSSHHHHHHHHHHHTSS
T ss_pred --eCCCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 113799999999999999999999984
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=5.6e-20 Score=160.63 Aligned_cols=109 Identities=15% Similarity=0.252 Sum_probs=74.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 5789999999999999999999999999999999984 56899999999999999999999999999999999998865
Q ss_pred hHHHHHhhhhhhhhccccccccccccccCCCcccchhh
Q 008385 208 TREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVE 245 (567)
Q Consensus 208 ~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~ 245 (567)
........ .......++ +||+||++.+|++.
T Consensus 83 ~~~~~~~~------~~~~~~~~~-lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAEL------GARAKEFTN-VYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-----------------------------------
T ss_pred cccccccc------ccccCCCCc-eEeCCCCCCccccc
Confidence 42211111 111223344 49999999998763
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=152.51 Aligned_cols=82 Identities=21% Similarity=0.323 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..+++|||+|||+++|+++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
.+
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 64
No 24
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=148.32 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=79.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|++||.|.+|.|+.++.||+++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhH
Q 008385 207 ATR 209 (567)
Q Consensus 207 ~~~ 209 (567)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 543
No 25
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.76 E-value=7.4e-18 Score=147.51 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=77.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34679999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred ch
Q 008385 205 DQ 206 (567)
Q Consensus 205 a~ 206 (567)
+.
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=6.9e-19 Score=147.11 Aligned_cols=81 Identities=21% Similarity=0.343 Sum_probs=75.9
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEc
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVD 205 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L-ng~~i~gr~l~V~~a 205 (567)
+++|||+|||+++|+++|+.+|+.|| .|.+|.|+.++.||.++|||||+|.+.++|.+||..| |+..|+|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999877 567899999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
.+.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 764
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=144.50 Aligned_cols=83 Identities=19% Similarity=0.370 Sum_probs=77.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCc--eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT--VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 198 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~--v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~----~i~gr 198 (567)
.....||||+|||+.+|+++|+.+|++||. |.+|.|+.|+.||.++|||||+|.+.++|..||..|||. .|+|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345789999999999999999999999995 779999999999999999999999999999999999996 59999
Q ss_pred EEEEEEchh
Q 008385 199 ELMLKVDQA 207 (567)
Q Consensus 199 ~l~V~~a~~ 207 (567)
.|.|.|+.+
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 28
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=154.57 Aligned_cols=82 Identities=23% Similarity=0.345 Sum_probs=77.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..++|||||||+++|+++|+.+|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8764
No 29
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3.6e-18 Score=145.25 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=81.0
Q ss_pred CCCceEEEcCCCC------CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 008385 126 KPQTKVYVGKIAP------TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-Q 198 (567)
Q Consensus 126 ~~~~tlfVgnLp~------~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g-r 198 (567)
...++|||+|||+ .+++++|+.+|+.||.|.+|.|+.++.||.++|||||+|.+.++|..||..|||..|+| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEchhhHHH
Q 008385 199 ELMLKVDQATREY 211 (567)
Q Consensus 199 ~l~V~~a~~~~~~ 211 (567)
.|.|.++.....+
T Consensus 84 ~l~V~~a~~~~~~ 96 (100)
T 3ns6_A 84 RLFLYTMKDVERY 96 (100)
T ss_dssp BCEEEESHHHHHH
T ss_pred EEEEEECchhhhh
Confidence 9999999876554
No 30
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=136.65 Aligned_cols=81 Identities=16% Similarity=0.328 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||..+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 85 ~ 85 (87)
T 3bs9_A 85 R 85 (87)
T ss_dssp -
T ss_pred C
Confidence 5
No 31
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=145.22 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 45689999999999999999999999999999999999999999999999999999999999 89999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 764
No 32
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-17 Score=137.26 Aligned_cols=81 Identities=15% Similarity=0.232 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 35789999999999999999999999999999999999989999999999999999999999999999999999999886
Q ss_pred h
Q 008385 206 Q 206 (567)
Q Consensus 206 ~ 206 (567)
.
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.72 E-value=2.1e-17 Score=135.01 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=77.4
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
+.+|||+|||+.+++++|+.+|+.||.|.++.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred h
Q 008385 208 T 208 (567)
Q Consensus 208 ~ 208 (567)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.72 E-value=3.7e-17 Score=142.43 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 103 ~~~ 105 (115)
T 2cpz_A 103 RSK 105 (115)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 35
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=139.71 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--------~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g 197 (567)
...++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 35799999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred eEEEEEEch
Q 008385 198 QELMLKVDQ 206 (567)
Q Consensus 198 r~l~V~~a~ 206 (567)
+.|.|.++.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999998863
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.72 E-value=2.2e-17 Score=135.54 Aligned_cols=81 Identities=21% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999886
Q ss_pred h
Q 008385 206 Q 206 (567)
Q Consensus 206 ~ 206 (567)
.
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.72 E-value=2.6e-17 Score=138.67 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=79.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||..+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred hhHH
Q 008385 207 ATRE 210 (567)
Q Consensus 207 ~~~~ 210 (567)
....
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7543
No 38
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=138.51 Aligned_cols=82 Identities=23% Similarity=0.383 Sum_probs=78.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 457899999999999999999999999999999999999999999999999999999999999 8999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 39
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.6e-17 Score=136.55 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 40
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.9e-17 Score=139.75 Aligned_cols=83 Identities=20% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 93 ~~~ 95 (105)
T 1x5u_A 93 SAH 95 (105)
T ss_dssp TTT
T ss_pred CCC
Confidence 664
No 41
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=6.7e-18 Score=140.62 Aligned_cols=80 Identities=19% Similarity=0.296 Sum_probs=72.7
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
.+|||||||+.+++++|+.+|+.|| .|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999999999999999998876
Q ss_pred hh
Q 008385 207 AT 208 (567)
Q Consensus 207 ~~ 208 (567)
..
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 42
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=137.18 Aligned_cols=82 Identities=23% Similarity=0.430 Sum_probs=78.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred hh
Q 008385 207 AT 208 (567)
Q Consensus 207 ~~ 208 (567)
..
T Consensus 84 ~~ 85 (95)
T 2dnz_A 84 ER 85 (95)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 43
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=3.6e-17 Score=141.16 Aligned_cols=83 Identities=23% Similarity=0.432 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 103 a~~ 105 (108)
T 2jrs_A 103 VTE 105 (108)
T ss_dssp SCS
T ss_pred ccc
Confidence 765
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.4e-17 Score=138.45 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=79.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 34579999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 92 a~~~ 95 (103)
T 2cq0_A 92 AKPS 95 (103)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8653
No 45
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=140.60 Aligned_cols=83 Identities=20% Similarity=0.326 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 90 a~~ 92 (103)
T 2dnm_A 90 ARY 92 (103)
T ss_dssp CSS
T ss_pred CCc
Confidence 865
No 46
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.70 E-value=7.9e-17 Score=140.26 Aligned_cols=84 Identities=15% Similarity=0.311 Sum_probs=79.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 92 a~~~ 95 (115)
T 2dgo_A 92 ATRK 95 (115)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8663
No 47
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=143.37 Aligned_cols=84 Identities=23% Similarity=0.324 Sum_probs=79.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||..+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 119 a~~~ 122 (139)
T 1u6f_A 119 AASG 122 (139)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8663
No 48
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=139.02 Aligned_cols=83 Identities=20% Similarity=0.352 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 49
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=137.09 Aligned_cols=83 Identities=16% Similarity=0.255 Sum_probs=79.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=139.96 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 101 ~~ 102 (106)
T 1p27_B 101 FV 102 (106)
T ss_dssp EE
T ss_pred cC
Confidence 65
No 51
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=137.58 Aligned_cols=83 Identities=17% Similarity=0.366 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..| .|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8653
No 52
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.70 E-value=5.2e-17 Score=140.29 Aligned_cols=82 Identities=22% Similarity=0.237 Sum_probs=78.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 104 ~~ 105 (110)
T 1oo0_B 104 FV 105 (110)
T ss_dssp EE
T ss_pred cc
Confidence 65
No 53
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=7.9e-17 Score=132.93 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=75.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. +++..|+|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999997 589999999999986
Q ss_pred c
Q 008385 205 D 205 (567)
Q Consensus 205 a 205 (567)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 4
No 54
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=135.44 Aligned_cols=82 Identities=17% Similarity=0.353 Sum_probs=77.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 94 ~~~ 96 (100)
T 2do4_A 94 NSG 96 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 55
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=8.9e-17 Score=137.99 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 457999999999999999999999999999999999998 9999999999999999999999999999999999999987
Q ss_pred h
Q 008385 206 Q 206 (567)
Q Consensus 206 ~ 206 (567)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 4
No 56
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=136.00 Aligned_cols=80 Identities=23% Similarity=0.435 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 457899999999999999999999999999999999997 4999999999999999999999999999999999999887
Q ss_pred h
Q 008385 206 Q 206 (567)
Q Consensus 206 ~ 206 (567)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 57
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.9e-17 Score=137.87 Aligned_cols=83 Identities=18% Similarity=0.362 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 58
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=7.7e-17 Score=139.28 Aligned_cols=83 Identities=18% Similarity=0.354 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC------CceeCCeE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN------KFNIDGQE 199 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln------g~~i~gr~ 199 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|| |..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 457899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred EEEEEchhh
Q 008385 200 LMLKVDQAT 208 (567)
Q Consensus 200 l~V~~a~~~ 208 (567)
|.|.++...
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999988653
No 59
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=9.7e-17 Score=137.29 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=77.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC---eEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG---QELML 202 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g---r~l~V 202 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 458999999999999999999999999999999999997 89999999999999999999999999999998 99999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.++...
T Consensus 92 ~~a~~~ 97 (105)
T 2dnh_A 92 KFADTD 97 (105)
T ss_dssp EESCSS
T ss_pred EECccC
Confidence 998763
No 60
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=138.12 Aligned_cols=84 Identities=20% Similarity=0.411 Sum_probs=79.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeec-CCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQY-PSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELML 202 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~-~~tg~~kg~aFVef~~~~~A~~Ai~~L-ng~~i~gr~l~V 202 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +.+|.++|||||+|.+.++|..||..| ||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 446799999999999999999999999999999999998 789999999999999999999999999 999999999999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.++...
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998663
No 61
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=136.91 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCcee-EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE----E
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVK-SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE----L 200 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~-~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~----l 200 (567)
...++|||+|||+.+++++|+.+|+.||.|. +|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3579999999999999999999999999999 9999999999999999999999999999999999999999999 9
Q ss_pred EEEEchh
Q 008385 201 MLKVDQA 207 (567)
Q Consensus 201 ~V~~a~~ 207 (567)
.|.++..
T Consensus 87 ~v~~a~~ 93 (99)
T 2div_A 87 KLNYATY 93 (99)
T ss_dssp CEEETTC
T ss_pred EEeecCC
Confidence 9988765
No 62
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=6e-17 Score=138.86 Aligned_cols=84 Identities=17% Similarity=0.277 Sum_probs=79.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee---CCeEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI---DGQELM 201 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i---~gr~l~ 201 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..| .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34579999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.++...
T Consensus 90 v~~a~~~ 96 (106)
T 2dgp_A 90 VKPADSE 96 (106)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9988663
No 63
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=139.18 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=79.0
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCcee--------EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVK--------SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--------~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
....++|||+|||+.+++++|+.+|+.||.|. .|.|+.++.+|.++|||||+|.+.++|..||..|||..|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 44689999999999999999999999999999 6999999889999999999999999999999999999999
Q ss_pred CeEEEEEEchhh
Q 008385 197 GQELMLKVDQAT 208 (567)
Q Consensus 197 gr~l~V~~a~~~ 208 (567)
|+.|.|.++...
T Consensus 92 g~~l~V~~a~~~ 103 (113)
T 2cpe_A 92 GSKLKVSLARKK 103 (113)
T ss_dssp TEECEEECSSCC
T ss_pred CCEEEEEECCCC
Confidence 999999987653
No 64
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.1e-17 Score=136.76 Aligned_cols=83 Identities=19% Similarity=0.402 Sum_probs=77.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCC---CCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---NGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~---tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++. |+.++|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3578999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.++...
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 988653
No 65
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.2e-17 Score=139.50 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||||||+.+|+++|+.+|+.||.|.+|.|+.++. |.++|||||+|.+.++|..||. +||..|+|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568999999999999999999999999999999999976 9999999999999999999999 8999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 66
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.1e-16 Score=132.52 Aligned_cols=79 Identities=24% Similarity=0.417 Sum_probs=76.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+ .|||..|+|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 579999999999999999999999999999999999889999999999999999999999 8999999999999998765
No 67
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.6e-16 Score=135.51 Aligned_cols=81 Identities=17% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3579999999999999999999999997 999999999999999999999999999999999 79999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 91 ~~~ 93 (103)
T 2dng_A 91 EGR 93 (103)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 68
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-17 Score=140.01 Aligned_cols=81 Identities=20% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecC-CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYP-SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~-~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
....++|||+|||+.+++++|+.+|+.|| |.+|.|+.++ .+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34579999999999999999999999999 9999999998 69999999999999999999999 799999999999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
++..
T Consensus 94 ~a~~ 97 (100)
T 2j76_E 94 VADQ 97 (100)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8865
No 69
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.68 E-value=8.3e-17 Score=142.50 Aligned_cols=83 Identities=17% Similarity=0.184 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 653
No 70
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.1e-16 Score=133.74 Aligned_cols=82 Identities=21% Similarity=0.308 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH--TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC--CSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC--CCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4467999999999999999999999999999999999984 34789999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqi_A 90 ATTP 93 (103)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 8763
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=7.1e-17 Score=143.88 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 653
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=132.30 Aligned_cols=81 Identities=25% Similarity=0.430 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCC-CccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGT-PKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~-~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..++|||+|||+++++++|+.+|+.||.|..|.|+.+..++. ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 9999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 73
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.7e-16 Score=135.65 Aligned_cols=81 Identities=22% Similarity=0.445 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t-g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+.++|||+|||+.+++++|+.+|+.|| |..|.|+.++.+ |.++|||||+|.+.++|..|| .|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3569999999999999999999999999 999999999887 999999999999999999999 8999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8663
No 74
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=135.03 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=77.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 34789999999999999999999999999999989988899999999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 93 ~~ 94 (98)
T 2cqp_A 93 SG 94 (98)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 75
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=1.2e-16 Score=139.68 Aligned_cols=82 Identities=15% Similarity=0.319 Sum_probs=77.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+++++++|+.+|+.||.|..|.|+.+. +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 357899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 84 ~~~ 86 (116)
T 2fy1_A 84 KKP 86 (116)
T ss_dssp CCS
T ss_pred CCC
Confidence 753
No 76
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=137.71 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=74.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.++|..||..+ |..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 456799999999999999999999999999999999999999999999999999999999999975 5999999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 865
No 77
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=145.62 Aligned_cols=83 Identities=17% Similarity=0.370 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeE--EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCc----eeCCe
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKF----NIDGQ 198 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~----~i~gr 198 (567)
....++|||+|||+.+|+++|+.+|+.||.|.. |.|+.++.||.++|||||+|.+. +|..||..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 345789999999999999999999999999977 99999999999999999999999 999999999999 99999
Q ss_pred EEEEEEchhh
Q 008385 199 ELMLKVDQAT 208 (567)
Q Consensus 199 ~l~V~~a~~~ 208 (567)
.|.|.++...
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999988663
No 78
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=135.09 Aligned_cols=82 Identities=24% Similarity=0.337 Sum_probs=77.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVAL 89 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 346889999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 90 a~~~ 93 (103)
T 2d9p_A 90 AQRK 93 (103)
T ss_dssp CSSC
T ss_pred eccc
Confidence 8663
No 79
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=137.08 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=77.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..||+ .|+|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 44689999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 93 a~~ 95 (116)
T 2cqd_A 93 AYL 95 (116)
T ss_dssp STT
T ss_pred ccc
Confidence 855
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=137.41 Aligned_cols=81 Identities=19% Similarity=0.243 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||..+++++|+.+|+.||.|..|.|+.+. +.++|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999884 45899999999999999999999999999999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 104 a~~ 106 (109)
T 2err_A 104 ATA 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 81
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.4e-17 Score=137.04 Aligned_cols=84 Identities=29% Similarity=0.540 Sum_probs=79.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhhH
Q 008385 206 QATR 209 (567)
Q Consensus 206 ~~~~ 209 (567)
....
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7653
No 82
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-17 Score=134.87 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999987654
No 83
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=138.34 Aligned_cols=82 Identities=13% Similarity=0.267 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCC------cHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 008385 125 EKPQTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ 198 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr 198 (567)
....++|||+|||+.+ ++++|+.+|+.||.|.+|.|+ +.+|.++|||||+|.+.++|..||..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3457899999999999 789999999999999999988 36899999999999999999999999999999998
Q ss_pred -EEEEEEchhh
Q 008385 199 -ELMLKVDQAT 208 (567)
Q Consensus 199 -~l~V~~a~~~ 208 (567)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999987653
No 84
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.6e-16 Score=132.08 Aligned_cols=82 Identities=18% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT--TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC--CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3457999999999999999999999999999999999885 34899999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8663
No 85
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.8e-16 Score=135.66 Aligned_cols=81 Identities=17% Similarity=0.293 Sum_probs=76.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|..||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 457899999999999999999999999999999999997 6999999999999999999999999999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=6.7e-17 Score=129.49 Aligned_cols=75 Identities=21% Similarity=0.313 Sum_probs=72.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+. |||..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999998899999999999999999999998 8999999999999864
No 87
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=1e-16 Score=134.51 Aligned_cols=80 Identities=21% Similarity=0.217 Sum_probs=76.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|..||.|..+.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 46899999999999999999999999999999999988999999999999999999999999999999999999998764
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=2.2e-16 Score=129.18 Aligned_cols=74 Identities=12% Similarity=0.235 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
.+.-||||||++.+|+++|+++|.+||+|.++.++. ++|||||+|.+.++|..|+..|||..|.|+.|.|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999965 58999999999999999999999999999999999884
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=2e-16 Score=131.86 Aligned_cols=81 Identities=25% Similarity=0.420 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999985 8999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 84 ~~~ 86 (92)
T 2dgv_A 84 RNA 86 (92)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 90
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=4.2e-16 Score=129.73 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.| .|..|.|+.+ .+|.++|||||+|.+.++|..||. |||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3457899999999999999999999999 9999999999 799999999999999999999999 999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8653
No 91
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=136.32 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=77.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhh-CCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce-eCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKV-CGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN-IDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~-~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~-i~gr~l~V~ 203 (567)
.+.++|||+|||+.+++++|+.+|+. ||.|.+|.|+.++ +|.++|||||+|.+.++|..||..|||.. |+|+.|.|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 45789999999999999999999999 9999999999998 99999999999999999999999999999 999999998
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
++..
T Consensus 86 ~a~~ 89 (104)
T 2dhg_A 86 VAIP 89 (104)
T ss_dssp BCCC
T ss_pred EccC
Confidence 8755
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.2e-16 Score=132.28 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=76.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 4457899999999999999999999999999999999999899999999999999999999998 57899999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 8663
No 93
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.66 E-value=2.7e-16 Score=146.09 Aligned_cols=83 Identities=22% Similarity=0.235 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 654
No 94
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=131.94 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCcHHHHH----HHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
..++|||+|||+.+++++|+ .+|+.||.|.+|.|+.++.+ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V 84 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILV 84 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 47899999999999999999 99999999999999998655 899999999999999999999999999999999
Q ss_pred EEchh
Q 008385 203 KVDQA 207 (567)
Q Consensus 203 ~~a~~ 207 (567)
.++..
T Consensus 85 ~~a~~ 89 (96)
T 2dgx_A 85 SLATG 89 (96)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 98865
No 95
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=4.7e-16 Score=139.93 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..+.|+.++.+|.++|||||+|.+.++|.+||..|||..|+|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999874
No 96
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.5e-16 Score=139.74 Aligned_cols=83 Identities=12% Similarity=0.258 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCcHHHHH----HHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.+.. +|.++|||||+|.+.++|..||..|||..|.|+.|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~ 103 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLV 103 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEE
Confidence 357899999999999999866 7999999999988753 789999999999999999999999999999999999
Q ss_pred EEEchhhHHH
Q 008385 202 LKVDQATREY 211 (567)
Q Consensus 202 V~~a~~~~~~ 211 (567)
|.|+......
T Consensus 104 V~~a~~~~~~ 113 (127)
T 2a3j_A 104 ITFSETPQSQ 113 (127)
T ss_dssp EEECCCCCHH
T ss_pred EEEccCcchh
Confidence 9999775443
No 97
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=135.23 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=78.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34579999999999999999999999999999999999999999999999999999999999998 99999999999988
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7653
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=1.5e-15 Score=134.02 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 457899999999999999999999999999999999998 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 112 ~~~ 114 (124)
T 2kt5_A 112 ASQ 114 (124)
T ss_dssp CCT
T ss_pred CCC
Confidence 663
No 99
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.66 E-value=1.4e-16 Score=140.64 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|| .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999889999999999999999999999 799999999999999876
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 5
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=3.5e-16 Score=137.16 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=76.4
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
....++|||+|||+.+|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 345789999999999999999999999999 89999999975 9999999999999999999999 899999999999
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.++...
T Consensus 92 V~~a~~~ 98 (118)
T 2db1_A 92 VFKSHRT 98 (118)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9988654
No 101
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-17 Score=129.02 Aligned_cols=76 Identities=22% Similarity=0.359 Sum_probs=73.2
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
++|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+..|+ ..|+|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 589999999999999999999999999999999999899999999999999999999999988 9999999999875
No 102
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=136.22 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCce-eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV-KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v-~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...++|||+|||+.+|+++|+.+|+.||.| ..|.|+.++ +|.++|||||+|.+.++|..||.. ||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 357899999999999999999999999999 899999998 999999999999999999999996 99999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8664
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.65 E-value=5.1e-16 Score=142.76 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=79.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 117 ~~ 118 (156)
T 1h2v_Z 117 AG 118 (156)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 104
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.9e-16 Score=136.93 Aligned_cols=81 Identities=21% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|..||.|..|.|+.++.+|.++|||||+|.+.++|..||.. ||..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 468999999999999999999999999999999999999999999999999999999999997 9999999999999876
Q ss_pred hh
Q 008385 207 AT 208 (567)
Q Consensus 207 ~~ 208 (567)
..
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 105
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.4e-16 Score=133.18 Aligned_cols=82 Identities=26% Similarity=0.356 Sum_probs=76.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI--------D 196 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i--------~ 196 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..| .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3457899999999999999999999999999999999998 999999999999999999999999999999 5
Q ss_pred CeEEEEEEchh
Q 008385 197 GQELMLKVDQA 207 (567)
Q Consensus 197 gr~l~V~~a~~ 207 (567)
++.|.|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 77899988764
No 106
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.3e-15 Score=131.23 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+. ++.++|||||+|.+.++|..||..||+..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 4578999999999999999999999999999999965 4668999999999999999999999999999999999988
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 97 ~~ 98 (109)
T 1x4a_A 97 RS 98 (109)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 107
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-16 Score=139.06 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+|+++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 356899999999999999999999999999987777777799999999999999999999999 9999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 664
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.7e-16 Score=134.20 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln--g~~i~gr~l~V~~ 204 (567)
+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 5789999999999999999999999999999999875 6999999999999999999886 4799999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 765
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.65 E-value=6.7e-17 Score=134.27 Aligned_cols=79 Identities=25% Similarity=0.404 Sum_probs=74.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
++|||+|||..+++++|+.+|+.||.|.+|.|+.++.+|.++|||||+|.+.+ |..|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999998764
No 110
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.64 E-value=6.2e-16 Score=142.32 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 653
No 111
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=134.76 Aligned_cols=83 Identities=17% Similarity=0.270 Sum_probs=77.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCc-eeEEEEe-ecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRA-QYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~-~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln--g~~i~gr~l~ 201 (567)
.+.++|||+|||+.+++++|+.+|..||. |..|.|+ .+..+|.++|||||+|.+.++|..||..|| +..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35789999999999999999999999998 9999998 788899999999999999999999999996 5999999999
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.++...
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998764
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.3e-16 Score=154.50 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=78.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC--ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG--TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G--~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..++|||+||++.+|+++|+.+|+.|| .|..|.|+.++.||+++|||||+|.+.++|.+||..|||+.|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 577999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred chhhH
Q 008385 205 DQATR 209 (567)
Q Consensus 205 a~~~~ 209 (567)
+....
T Consensus 147 a~~~~ 151 (229)
T 3q2s_C 147 VNKQF 151 (229)
T ss_dssp CCHHH
T ss_pred CCCCc
Confidence 87653
No 113
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-16 Score=129.55 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=68.2
Q ss_pred CceEEEcCCCCCC------cHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe-EE
Q 008385 128 QTKVYVGKIAPTA------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ-EL 200 (567)
Q Consensus 128 ~~tlfVgnLp~~~------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr-~l 200 (567)
.++|||+|||+.+ ++++|+.+|+.||.|.+|.|+ +.+|.++|||||+|.+.++|..||..|||..|+|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999999 88
Q ss_pred EE
Q 008385 201 ML 202 (567)
Q Consensus 201 ~V 202 (567)
.|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 114
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.64 E-value=3.5e-16 Score=136.43 Aligned_cols=81 Identities=12% Similarity=0.173 Sum_probs=73.4
Q ss_pred CceEEEcCC----CCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCC----HHH----HHHHHH--HhCCc
Q 008385 128 QTKVYVGKI----APTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES----AEG----VLRALR--LLNKF 193 (567)
Q Consensus 128 ~~tlfVgnL----p~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~----~~~----A~~Ai~--~Lng~ 193 (567)
.+.|||||| |+.+++..|+.+|+.||.|.+|.++.|+.||.++|||||+|.+ +.. |..|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999996 333 788888 78999
Q ss_pred eeCCeEEEEEEchhh
Q 008385 194 NIDGQELMLKVDQAT 208 (567)
Q Consensus 194 ~i~gr~l~V~~a~~~ 208 (567)
.|+|+.|+|.+....
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987654
No 115
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-16 Score=133.49 Aligned_cols=75 Identities=27% Similarity=0.400 Sum_probs=71.3
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT 208 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~ 208 (567)
++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|..|+..|||..|+|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 7899999999999999999999999999999999998764
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-17 Score=136.46 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|.. .++.+..+|.++|||||+|.+.++|..||. |||..|+|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35789999999999999999999999999988 677777789999999999999999999999 9999999999999987
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 117
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.64 E-value=2e-16 Score=142.13 Aligned_cols=83 Identities=18% Similarity=0.273 Sum_probs=78.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35789999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 118
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=7.3e-16 Score=130.27 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=70.9
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELML 202 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~--i~gr~l~V 202 (567)
..++++|||+|||+.+|+++|+.+|+.||.|.+|.++.. +|||||+|.+.++|..|+..|+|.. |.|+.|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 346889999999999999999999999999999999753 6999999999999999999999875 88999999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.|+...
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 998753
No 119
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.2e-16 Score=134.99 Aligned_cols=82 Identities=18% Similarity=0.281 Sum_probs=75.6
Q ss_pred CCceEEEcCCCCCCcHHHHH---HHHhhCCceeEEEEeecCCCC---CCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 127 PQTKVYVGKIAPTADSDFVL---SVLKVCGTVKSWKRAQYPSNG---TPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~---~~F~~~G~v~~~~i~~~~~tg---~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
..++|||+|||+.+++++|+ .+|+.||.|..|.|+.+..++ .++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 47899999999999999999 999999999999999887654 566999999999999999999999999999999
Q ss_pred EEEEchhh
Q 008385 201 MLKVDQAT 208 (567)
Q Consensus 201 ~V~~a~~~ 208 (567)
.|.++...
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99988664
No 120
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=129.11 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh--CCceeCCeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL--NKFNIDGQELML 202 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L--ng~~i~gr~l~V 202 (567)
..+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 345789999999999999999999999999999988764 699999999999999999976 578899999999
Q ss_pred EEchh
Q 008385 203 KVDQA 207 (567)
Q Consensus 203 ~~a~~ 207 (567)
.|+..
T Consensus 86 ~~a~~ 90 (101)
T 2cq1_A 86 QYSNH 90 (101)
T ss_dssp EECSC
T ss_pred EEcCc
Confidence 99865
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=4.7e-16 Score=132.69 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=73.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+|+++|+++|+.|| |+.|.|+.++ +|+++|||||+|.+.++|.+||. +|+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 3468999999999999999999999999 5599999997 99999999999999999999995 7999999999999876
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 90 ~~ 91 (102)
T 1wez_A 90 ST 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 122
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1e-15 Score=131.00 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeE-EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS-WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~-~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...++|||+|||+.+|+++|+.+|..||.|.. |.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35789999999999999999999999999987 888888 7999999999999999999999996 99999999999987
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 654
No 123
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.62 E-value=4.2e-16 Score=131.23 Aligned_cols=82 Identities=13% Similarity=0.310 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCcHHHHH----HHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVL----SVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~----~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
.+.++|||+|||+.+++++|+ .+|+.||.|..|.++. +|.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 457899999999999999999 9999999999999873 678899999999999999999999999999999999
Q ss_pred EEEchhhHH
Q 008385 202 LKVDQATRE 210 (567)
Q Consensus 202 V~~a~~~~~ 210 (567)
|.++.....
T Consensus 83 v~~a~~~~~ 91 (97)
T 1nu4_A 83 IQYAKTDSD 91 (97)
T ss_dssp EEECSSCCT
T ss_pred EEEccCCCc
Confidence 999876533
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=1.3e-15 Score=132.42 Aligned_cols=80 Identities=14% Similarity=0.269 Sum_probs=74.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
+.++|||+|||+.+++++|+.+|+.||.|.+|.|+.+ +.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 5789999999999999999999999999999999865 5669999999999999999999999999999999999987
Q ss_pred hhH
Q 008385 207 ATR 209 (567)
Q Consensus 207 ~~~ 209 (567)
...
T Consensus 84 ~~~ 86 (115)
T 3lqv_A 84 ANR 86 (115)
T ss_dssp HHH
T ss_pred CCh
Confidence 653
No 125
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.3e-16 Score=134.94 Aligned_cols=83 Identities=19% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+|+++|+.+|+.||.|..+.+..+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 35789999999999999999999999999943332222238899999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 103 ~~~ 105 (115)
T 2cpx_A 103 KNK 105 (115)
T ss_dssp CCC
T ss_pred cCC
Confidence 663
No 126
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.62 E-value=7.9e-16 Score=138.14 Aligned_cols=81 Identities=16% Similarity=0.133 Sum_probs=76.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
...++|||+|||+++|+++|+.+|+.||. |..|.|+.++. |+++|||||+|.+.++|.+||. |||..|+|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 35789999999999999999999999999 89999999976 9999999999999999999999 9999999999999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.++...
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 987553
No 127
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.5e-16 Score=126.01 Aligned_cols=75 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
+|||+|||+.+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|..|+. +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999999 4999999999999864
No 128
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.1e-14 Score=146.55 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr~l~V~ 203 (567)
..+.++|||+|||..+++++|+.+|+.||.|..|.|+.++ +|||||+|.+.++|..||..|||..|+ |+.|.|.
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 4457899999999999999999999999999999998653 589999999999999999999999999 9999999
Q ss_pred Ech
Q 008385 204 VDQ 206 (567)
Q Consensus 204 ~a~ 206 (567)
|+.
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 875
No 129
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=4e-16 Score=134.18 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCc---eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGT---VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~---v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
....++|||+|||+.+|+++|+.+|+.||. |.+|.|+.++. |.++|||||+|.+.++|..||. |||..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346889999999999999999999999998 89999999976 9999999999999999999999 999999999999
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.++...
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988654
No 130
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=2.2e-15 Score=127.28 Aligned_cols=75 Identities=16% Similarity=0.386 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
..+.++|||+|||+ .+++++|+.+|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|+|+.|.|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34589999999998 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
++..
T Consensus 91 ~a~~ 94 (97)
T 2xnq_A 91 VSSS 94 (97)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 8765
No 131
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=129.18 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-----eEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-----QEL 200 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g-----r~l 200 (567)
...++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 35789999999999999999999999999999999876 899999999999999999999999999 999
Q ss_pred EEEEchh
Q 008385 201 MLKVDQA 207 (567)
Q Consensus 201 ~V~~a~~ 207 (567)
.|.++..
T Consensus 86 ~V~~a~~ 92 (108)
T 1x4c_A 86 RVKVDGP 92 (108)
T ss_dssp EEEESSC
T ss_pred EEEeCCC
Confidence 9998876
No 132
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2e-15 Score=128.12 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.| .++.+ .+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3468999999999999999999999999987 56666 6899999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8663
No 133
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=130.33 Aligned_cols=76 Identities=12% Similarity=0.100 Sum_probs=69.9
Q ss_pred CCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 008385 127 PQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 203 (567)
Q Consensus 127 ~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng--~~i~gr~l~V~ 203 (567)
+.++|||+|||+ .+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..||+ ..|.|+.|.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 578999999999 9999999999999999999999875 48999999999999999998886 46999999999
Q ss_pred Echhh
Q 008385 204 VDQAT 208 (567)
Q Consensus 204 ~a~~~ 208 (567)
++...
T Consensus 88 ~a~~~ 92 (102)
T 1x4d_A 88 LSQKY 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98753
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.61 E-value=1.6e-15 Score=130.70 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+ +|||||+|.+.++|..|+..|||..|+|+.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4467999999999999999999999999999999997 58999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 100 a~~~ 103 (108)
T 2jvo_A 100 SKLP 103 (108)
T ss_dssp CSCC
T ss_pred ecCC
Confidence 8653
No 135
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.8e-15 Score=130.63 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=72.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...+|||+|||+.+|+++|+++|+.| .|..|.|+.++ +|+++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 89999999997 4999999999999999999999 589999999999998775
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 5
No 136
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=123.29 Aligned_cols=76 Identities=21% Similarity=0.303 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLK 203 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L-ng~~i~gr~l~V~ 203 (567)
....++|||+|||..+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..| ||..|+|+.|.|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 345789999999999999999999999999999999874 699999999999999999988 9999999999998
Q ss_pred Ech
Q 008385 204 VDQ 206 (567)
Q Consensus 204 ~a~ 206 (567)
|+.
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 863
No 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=127.70 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=74.3
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..+.++|||+|||+.+++++|+.+|+.|+ .|.++.++.+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34579999999999999999999999874 678888888999999999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8763
No 138
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.61 E-value=1.9e-15 Score=130.82 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..++|||+|||+.+++++|+.+|+.|| .|..+.|+. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 478999999999999999999999999 899998853 358899999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 653
No 139
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.4e-15 Score=132.90 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln--g~~i~gr~l~V~ 203 (567)
.+.++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..||..|+ +..|.|+.|.|.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 35789999999999999999999999999999999876 6999999999999999999887 468999999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
++..
T Consensus 103 ~a~~ 106 (119)
T 2ad9_A 103 FSNH 106 (119)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=4.6e-15 Score=139.44 Aligned_cols=82 Identities=16% Similarity=0.232 Sum_probs=78.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 457899999999999999999999999999999999997 9999999999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 664
No 141
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.60 E-value=1.2e-17 Score=178.63 Aligned_cols=149 Identities=9% Similarity=0.039 Sum_probs=82.9
Q ss_pred HHHHHhhCCceeEEEEee----cC-CCCCCccEE--EEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhh---HHHHHh
Q 008385 145 VLSVLKVCGTVKSWKRAQ----YP-SNGTPKGFG--FCEFESAEGVLRALRLLNKFNIDGQELMLKVDQAT---REYLER 214 (567)
Q Consensus 145 L~~~F~~~G~v~~~~i~~----~~-~tg~~kg~a--FVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~---~~~~~~ 214 (567)
|..||..+|+|..|..+. +. .+....|++ |+.|.....+..++..++...+.+........... ...+..
T Consensus 9 L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~~ 88 (437)
T 3pgw_S 9 LLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELKM 88 (437)
T ss_pred HHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 778999999998874332 11 122223343 77787766655555433332221110000000000 000000
Q ss_pred hhhhhhhccccccccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 215 YVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 215 ~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|..... ..........+||+||++.+++++|.+++..++ |.......+..+|+++|||||+|.+.++|..||..||+.
T Consensus 89 ~~p~~~-~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~ 167 (437)
T 3pgw_S 89 WDPHND-PNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGK 167 (437)
T ss_pred cCCccc-ccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCC
Confidence 000000 001112234579999999999999999854222 222222233578999999999999999999999999986
Q ss_pred H
Q 008385 294 V 294 (567)
Q Consensus 294 i 294 (567)
.
T Consensus 168 ~ 168 (437)
T 3pgw_S 168 K 168 (437)
T ss_pred E
Confidence 3
No 142
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.60 E-value=2e-15 Score=128.17 Aligned_cols=75 Identities=20% Similarity=0.348 Sum_probs=70.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||..+++++|+.+|+.||.|.+|.++ .++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 46899999999999999999999999999999997 357999999999999999999999999999999998875
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 100 ~ 100 (101)
T 2la4_A 100 E 100 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 143
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=124.00 Aligned_cols=75 Identities=19% Similarity=0.395 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+++++++|+.+|+.||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 457999999999999999999999999999999997 489999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 78 ~~~ 80 (90)
T 2dnq_A 78 KNK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 144
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.2e-15 Score=125.27 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|. +.++. +.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999997 66664 478899999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 92 ~~~ 94 (97)
T 2e5j_A 92 RQQ 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 145
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6.5e-15 Score=122.80 Aligned_cols=76 Identities=24% Similarity=0.419 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34689999999999999999999999999999999974 4999999999999999999999999999999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 79 a~~~ 82 (92)
T 2dgt_A 79 STSR 82 (92)
T ss_dssp SSCC
T ss_pred ccCC
Confidence 8653
No 146
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=6.1e-15 Score=124.22 Aligned_cols=76 Identities=16% Similarity=0.387 Sum_probs=70.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC--CeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID--GQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~--gr~l~V~~ 204 (567)
+.++|||+|||+.+++++|+.+|+.||.|..|.++.+ +|||||+|.+.++|..|+..|||..|. |+.|.|.+
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 4689999999999999999999999999999998754 689999999999999999999999999 99999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 147
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=4.6e-15 Score=128.28 Aligned_cols=78 Identities=13% Similarity=0.207 Sum_probs=69.9
Q ss_pred CCCCceEEEcCCCCC-CcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC--CceeCCeEEE
Q 008385 125 EKPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN--KFNIDGQELM 201 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln--g~~i~gr~l~ 201 (567)
..+.++|||+|||+. +++++|+.+|+.||.|.+|.|+. ++|||||+|.+.++|..||..|| +..|.|+.|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 345889999999998 99999999999999999999974 36999999999999999999885 5679999999
Q ss_pred EEEchhh
Q 008385 202 LKVDQAT 208 (567)
Q Consensus 202 V~~a~~~ 208 (567)
|.++...
T Consensus 96 V~~a~~~ 102 (112)
T 1x4f_A 96 VDLSEKY 102 (112)
T ss_dssp EEEECSC
T ss_pred EEECccc
Confidence 9998653
No 148
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=128.35 Aligned_cols=77 Identities=19% Similarity=0.317 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||..+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.|+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 45789999999999999999999999999999999876 699999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 149
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=1.7e-15 Score=127.35 Aligned_cols=78 Identities=17% Similarity=0.249 Sum_probs=71.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
....++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467999999999999999999999999988776 24789999999999999999999999999999999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 865
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.9e-15 Score=127.38 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC--ceeCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK--FNIDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng--~~i~gr~l~V~ 203 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 35789999999999999999999999999999998764 69999999999999999998865 45999999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
|+..
T Consensus 87 ~a~~ 90 (104)
T 1wex_A 87 YSTS 90 (104)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9865
No 151
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=6.2e-16 Score=140.07 Aligned_cols=83 Identities=16% Similarity=0.275 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEE--E---eecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWK--R---AQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~--i---~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
.+.++|||+|||+.+|+++|+.+|+.||.|..|. + +....+|.++|||||+|.+.++|..||..|||..|+|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 4578999999999999999999999999988751 1 1112479999999999999999999999999999999999
Q ss_pred EEEEchhh
Q 008385 201 MLKVDQAT 208 (567)
Q Consensus 201 ~V~~a~~~ 208 (567)
.|.++...
T Consensus 123 ~V~~a~~~ 130 (143)
T 3egn_A 123 VVQFARSA 130 (143)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998664
No 152
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.58 E-value=1.3e-15 Score=129.62 Aligned_cols=79 Identities=27% Similarity=0.391 Sum_probs=75.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++ +|.++|||||+|.+.++|..||. +|..|+|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 46899999999999999999999999999999999998 99999999999999999999999 9999999999998876
Q ss_pred hh
Q 008385 207 AT 208 (567)
Q Consensus 207 ~~ 208 (567)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 54
No 153
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=124.89 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFA 86 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEc
Confidence 45789999999999999999999999999999999754 699999999999999999999999999999999988
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 87 ~~ 88 (99)
T 2cpj_A 87 CH 88 (99)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 154
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=130.60 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..|.|+. ++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 468999999999999999999999999999998864 46899999999999999999999999999999999986
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 5
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.57 E-value=1.3e-14 Score=125.31 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCC-CcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...++|||+|||+. +++++|+.+|+.||.|..|.| ++|||||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 35689999999999 999999999999999999998 469999999999999999999999999999999998
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 156
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=138.48 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeE--------EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKS--------WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~--------~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g 197 (567)
.+.++|||+|||+.+++++|+.+|+.||.|.. |.|+.++.+|.++|||||+|.+.++|..||..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45789999999999999999999999999999 8999998899999999999999999999999999999999
Q ss_pred eEEEEEEchhh
Q 008385 198 QELMLKVDQAT 208 (567)
Q Consensus 198 r~l~V~~a~~~ 208 (567)
+.|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999988764
No 157
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-14 Score=132.78 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=77.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||..+++++|+.+|+.||.|..+.++.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 35789999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred h
Q 008385 206 Q 206 (567)
Q Consensus 206 ~ 206 (567)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 158
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=120.96 Aligned_cols=75 Identities=17% Similarity=0.316 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+. +||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 4578999999999999999999999999999999974 49999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 159
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=2.5e-14 Score=120.87 Aligned_cols=76 Identities=17% Similarity=0.369 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCcHHHHHHHHhhC--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 125 EKPQTKVYVGKIAPTADSDFVLSVLKVC--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~te~~L~~~F~~~--G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
....++|||+|||+.+++++|+.+|+.| |.|..|.++ +|||||+|.+.++|..||..|||..|+|+.|.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 3457899999999999999999999999 999998874 479999999999999999999999999999999
Q ss_pred EEchhh
Q 008385 203 KVDQAT 208 (567)
Q Consensus 203 ~~a~~~ 208 (567)
.++...
T Consensus 84 ~~a~~~ 89 (99)
T 2cpd_A 84 TLAKPV 89 (99)
T ss_dssp ECCCCC
T ss_pred EECCCC
Confidence 988653
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.56 E-value=8.7e-15 Score=133.57 Aligned_cols=78 Identities=24% Similarity=0.394 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 145 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELS 145 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 35789999999999999999999999999999999876 5899999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 146 ~~~ 148 (150)
T 2i2y_A 146 NGE 148 (150)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 161
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=1.6e-14 Score=123.03 Aligned_cols=75 Identities=16% Similarity=0.407 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|||+.+|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 357899999999999999999999999999999986 359999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 81 ~~~ 83 (103)
T 2dgu_A 81 KPP 83 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 663
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=122.45 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEE-EEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSW-KRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~-~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
...++|||+|||+.+++++|+.+|+.||.|..| .|+.++.+| .|||+|.+.++|..||..|||..|+|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 357899999999999999999999999999999 588775443 499999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8653
No 163
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=5.9e-15 Score=130.10 Aligned_cols=80 Identities=23% Similarity=0.219 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCce----eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV----KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v----~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
...++|||+|||+++|+++|+++|+.||.| ..|.|+.+ .+|+++|||||+|.+.++|..||.. |+..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 357899999999999999999999999975 68999998 4999999999999999999999995 99999999999
Q ss_pred EEEchh
Q 008385 202 LKVDQA 207 (567)
Q Consensus 202 V~~a~~ 207 (567)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 987754
No 164
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=7.4e-15 Score=123.57 Aligned_cols=75 Identities=17% Similarity=0.421 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCC-CCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 126 KPQTKVYVGKIAP-TADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 126 ~~~~tlfVgnLp~-~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
.+.++|||+|||+ .+++++|+.+|+.||.|..|.|. +|||||+|.+.++|..||..|||..|.|+.|.|.+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 4588999999999 99999999999999999999984 58999999999999999999999999999999998
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8653
No 165
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=6.5e-15 Score=130.24 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=71.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCcee--EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVK--SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~--~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~ 204 (567)
..++|||+|||+.+|+++|+.+|+.| .|+ .|.|+.++. |+++|||||+|.+.++|.+||. +++..|+|+.|.|..
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 46889999999999999999999999 576 999999976 9999999999999999999998 488999999999987
Q ss_pred chh
Q 008385 205 DQA 207 (567)
Q Consensus 205 a~~ 207 (567)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 754
No 166
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.4e-14 Score=121.33 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..| +.++.+|. ||||+|.+.++|..||. |||..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 46899999999999999999999999999987 55655666 99999999999999999 99999999999998664
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 81 ~ 81 (94)
T 2e5g_A 81 Q 81 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 167
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=2.5e-14 Score=132.64 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
..++|||+|||..+++++|+.+|+.||.|..|.++.++.+|.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3789999999999999999999999999999999999889999999999999999999999999999999999999886
No 168
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.54 E-value=2.5e-15 Score=135.33 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+++|+++|+++|+.|| |+.|.|+.++. |+++|||||+|.+.++|..|| .||+..|+|+.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 3578999999999999999999999999 77999999975 999999999999999999999 68999999999999876
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 553
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.9e-14 Score=120.08 Aligned_cols=75 Identities=15% Similarity=0.332 Sum_probs=67.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCc-eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCC-ceeCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGT-VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNK-FNIDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~-v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng-~~i~gr~l~V~ 203 (567)
...++|||+|||+.+++++|+.+|+.||. |..+.+. ++|||||+|.+.++|..||..||| ..|+|+.|.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 35789999999999999999999999999 6666553 369999999999999999999999 99999999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
++..
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9865
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.9e-14 Score=119.03 Aligned_cols=74 Identities=15% Similarity=0.302 Sum_probs=69.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.| .|..|.|. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46899999999999999999999999 99999884 568999999999999999999999999999999999875
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 77 ~ 77 (88)
T 1wg1_A 77 T 77 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 171
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=6.1e-14 Score=118.12 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=68.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
.+.++|||+|| .+++++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 35789999996 89999999999999999999984 56799999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=3e-14 Score=118.27 Aligned_cols=74 Identities=16% Similarity=0.220 Sum_probs=62.7
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce--eCCeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN--IDGQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~--i~gr~l~V~ 203 (567)
.+.++|||||||+++|+++|+.+|+.||.|.+|.|+.+ ++|||||+|.+.++|.. |+|.. +.|+.|.|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHIS 79 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEE
Confidence 45889999999999999999999999999999999874 78999999999999883 46655 469999999
Q ss_pred Echhh
Q 008385 204 VDQAT 208 (567)
Q Consensus 204 ~a~~~ 208 (567)
++...
T Consensus 80 ~a~~k 84 (89)
T 3d2w_A 80 NAEPK 84 (89)
T ss_dssp ECC--
T ss_pred EcCCC
Confidence 88764
No 173
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.52 E-value=1.3e-14 Score=126.54 Aligned_cols=73 Identities=23% Similarity=0.314 Sum_probs=65.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE-----EE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE-----LM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~-----l~ 201 (567)
..++|||+|||+.+++++|+.+|..||.|..|.|+.+ |||||+|.+.++|..||..|||..|+|+. |.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4789999999999999999999999999999999775 89999999999999999999999999998 56
Q ss_pred EEEch
Q 008385 202 LKVDQ 206 (567)
Q Consensus 202 V~~a~ 206 (567)
|..+.
T Consensus 88 v~~~~ 92 (115)
T 3beg_B 88 VKVDG 92 (115)
T ss_dssp EEECC
T ss_pred eccCC
Confidence 65443
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.2e-14 Score=124.12 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=68.4
Q ss_pred CCCceEEE--cCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee-----CCe
Q 008385 126 KPQTKVYV--GKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI-----DGQ 198 (567)
Q Consensus 126 ~~~~tlfV--gnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i-----~gr 198 (567)
.+.++||| |||++.+++++|+.+|+.||.|..|.|+.+ +|||||+|.+.++|..|+..|||..| .|+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~ 96 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKI 96 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCc
Confidence 35788999 889999999999999999999999987643 69999999999999999999999998 689
Q ss_pred EEEEEEchh
Q 008385 199 ELMLKVDQA 207 (567)
Q Consensus 199 ~l~V~~a~~ 207 (567)
.|.|.|+..
T Consensus 97 ~l~v~~a~~ 105 (114)
T 2cq2_A 97 TLYLNFVEK 105 (114)
T ss_dssp ECEEEEESC
T ss_pred EEEEEeccc
Confidence 999987754
No 175
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.7e-14 Score=125.40 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCC---CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSN---GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELML 202 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~t---g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V 202 (567)
...++|||+|||+.+++++|+.+|+.||.|. +.++.+..+ |.++|||||+|.+.++|..||..|+ .++|+.|.|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3578999999999999999999999999999 888888766 8999999999999999999999884 478888887
Q ss_pred EEc
Q 008385 203 KVD 205 (567)
Q Consensus 203 ~~a 205 (567)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 644
No 176
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.52 E-value=3.9e-14 Score=136.90 Aligned_cols=82 Identities=18% Similarity=0.371 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
...+|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|+|+.|.|.++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 35789999999999999999999999999999999984 5689999999999999999999999999999999999997
Q ss_pred hhHH
Q 008385 207 ATRE 210 (567)
Q Consensus 207 ~~~~ 210 (567)
....
T Consensus 180 ~~~~ 183 (213)
T 4f02_A 180 SRKE 183 (213)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 7543
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-14 Score=119.50 Aligned_cols=72 Identities=18% Similarity=0.307 Sum_probs=64.6
Q ss_pred Cce-EEEcCCCCCCcHHH----HHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 128 QTK-VYVGKIAPTADSDF----VLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 128 ~~t-lfVgnLp~~~te~~----L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
+.| |||+|||+.+++++ |+.+|+.|| .|.+| || |||||.|.+.++|.+|+..|||..|.|+.|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999987 568999995 99998 34 9999999999999999999999999999999
Q ss_pred EEEchhhH
Q 008385 202 LKVDQATR 209 (567)
Q Consensus 202 V~~a~~~~ 209 (567)
|.++....
T Consensus 78 v~~A~~~s 85 (96)
T 2diu_A 78 VSFTPKNR 85 (96)
T ss_dssp EESSCCSC
T ss_pred EEecCCCc
Confidence 99987753
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.51 E-value=3.7e-14 Score=136.48 Aligned_cols=83 Identities=29% Similarity=0.492 Sum_probs=78.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||..+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 35689999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 663
No 179
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.50 E-value=5.3e-14 Score=129.26 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=70.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~ 204 (567)
...+|||+||++.+|+++|+.+|+.||.|..|.|+.. .++|||||+|.+.++|..|+..|||..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4678999999999999999999999999999998654 357899999999999999999999999965 9999999
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 8764
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.50 E-value=2.2e-14 Score=132.35 Aligned_cols=80 Identities=21% Similarity=0.382 Sum_probs=76.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|.++.|+.++.+|.++|||||+|.+.++|.+|+. |||..|+|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 36799999999999999999999999999999999998899999999999999999999998 89999999999999986
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 181
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.50 E-value=6.6e-14 Score=132.81 Aligned_cols=82 Identities=21% Similarity=0.443 Sum_probs=78.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 45799999999999999999999999999999999999889999999999999999999999999999999999999988
Q ss_pred hh
Q 008385 206 QA 207 (567)
Q Consensus 206 ~~ 207 (567)
..
T Consensus 192 ~~ 193 (198)
T 2yh0_A 192 SV 193 (198)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=5.6e-14 Score=115.52 Aligned_cols=72 Identities=24% Similarity=0.403 Sum_probs=66.6
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhC----C-------ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVC----G-------TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~----G-------~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~ 194 (567)
.+.++|||+|||+.+++++|+.+|+.| | .|.++.+..+ +|||||+|.+.++|..|+ .|||..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 357899999999999999999999999 8 8999998754 699999999999999999 899999
Q ss_pred eCCeEEEEEE
Q 008385 195 IDGQELMLKV 204 (567)
Q Consensus 195 i~gr~l~V~~ 204 (567)
|+|+.|.|..
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999863
No 183
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.49 E-value=9.4e-14 Score=122.95 Aligned_cols=77 Identities=17% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLK 203 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~-aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~ 203 (567)
....|||+||++.+|+++|+.+|+.||.|.+|.|+.. .+|| |||+|.+.++|..|+..|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 4578899999999999999999999999999988764 2588 9999999999999999999999988 899999
Q ss_pred Echhh
Q 008385 204 VDQAT 208 (567)
Q Consensus 204 ~a~~~ 208 (567)
|+...
T Consensus 102 ~ak~~ 106 (130)
T 3zzy_A 102 FSKLT 106 (130)
T ss_dssp ECSCS
T ss_pred ecCCC
Confidence 98764
No 184
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=1.6e-13 Score=117.50 Aligned_cols=82 Identities=17% Similarity=0.086 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCC-----CCcHHHHHHHHhhCCceeEEEEeecCCC-CCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE
Q 008385 126 KPQTKVYVGKIAP-----TADSDFVLSVLKVCGTVKSWKRAQYPSN-GTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE 199 (567)
Q Consensus 126 ~~~~tlfVgnLp~-----~~te~~L~~~F~~~G~v~~~~i~~~~~t-g~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~ 199 (567)
.++++|+|.||.. .-++++|+.+|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999973 2367899999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEEEchh
Q 008385 200 LMLKVDQA 207 (567)
Q Consensus 200 l~V~~a~~ 207 (567)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 185
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.49 E-value=8.7e-14 Score=131.72 Aligned_cols=82 Identities=15% Similarity=0.345 Sum_probs=75.9
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++.+|.++|||||+|.+.++|.+||.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999999988999999999999999999999985 8999999999999987
Q ss_pred hhH
Q 008385 207 ATR 209 (567)
Q Consensus 207 ~~~ 209 (567)
...
T Consensus 182 ~k~ 184 (196)
T 1l3k_A 182 SKQ 184 (196)
T ss_dssp ---
T ss_pred Chh
Confidence 753
No 186
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.48 E-value=1.3e-13 Score=127.04 Aligned_cols=79 Identities=22% Similarity=0.379 Sum_probs=75.5
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~ 204 (567)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|.| +.|.|.|
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 46899999999999999999999999999999999998899999999999999999999999999999988 9999987
Q ss_pred c
Q 008385 205 D 205 (567)
Q Consensus 205 a 205 (567)
+
T Consensus 168 A 168 (168)
T 1b7f_A 168 A 168 (168)
T ss_dssp C
T ss_pred C
Confidence 5
No 187
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=3.5e-13 Score=118.67 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccE-EEEEeCCHHHHHHHHHHhCCceeCC--eEEEEEE
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGF-GFCEFESAEGVLRALRLLNKFNIDG--QELMLKV 204 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~-aFVef~~~~~A~~Ai~~Lng~~i~g--r~l~V~~ 204 (567)
...|||+||++.+++++|+.+|+.||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 345789999999999999999999999999998652 286 9999999999999999999999987 6899988
Q ss_pred chhh
Q 008385 205 DQAT 208 (567)
Q Consensus 205 a~~~ 208 (567)
+...
T Consensus 99 Ak~~ 102 (124)
T 2e5i_A 99 ARPT 102 (124)
T ss_dssp CSCS
T ss_pred ecCC
Confidence 8664
No 188
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.46 E-value=1.6e-13 Score=126.06 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeE--EEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQE--LMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~--l~V~~ 204 (567)
..++|||+|||..+++++|+.+|+.||.|..+.++.+..+|.++|||||+|.+.++|..|+..|||..|+|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 4678999999999999999999999999999999999889999999999999999999999999999999975 77776
Q ss_pred c
Q 008385 205 D 205 (567)
Q Consensus 205 a 205 (567)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=1.4e-13 Score=121.00 Aligned_cols=75 Identities=15% Similarity=0.281 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEc
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVD 205 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a 205 (567)
...++|||+|| .+++++|+.+|+.||.|.+|.|. .++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 35789999996 69999999999999999999985 46799999999999999999999999999999999998
Q ss_pred hhh
Q 008385 206 QAT 208 (567)
Q Consensus 206 ~~~ 208 (567)
...
T Consensus 109 ~~~ 111 (121)
T 2bz2_A 109 RKQ 111 (121)
T ss_dssp CSS
T ss_pred CCC
Confidence 663
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.44 E-value=2e-13 Score=126.62 Aligned_cols=79 Identities=14% Similarity=0.344 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---CeEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQELMLK 203 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~---gr~l~V~ 203 (567)
..++|||+|||+.+|+++|+.+|+.||.|.+|.++.++ +|.++|||||+|.+.++|..|+..|||..|. |+.|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 46799999999999999999999999999999999985 7999999999999999999999999998876 4999999
Q ss_pred Ech
Q 008385 204 VDQ 206 (567)
Q Consensus 204 ~a~ 206 (567)
|++
T Consensus 173 ~ad 175 (175)
T 3nmr_A 173 FAD 175 (175)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.44 E-value=2.7e-13 Score=129.14 Aligned_cols=79 Identities=18% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+. +|.++|||||+|.+.++|..||..+ +..|+|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 35899999999999999999999999999999999985 6999999999999999999999864 569999999998765
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.1e-13 Score=114.29 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=63.7
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.+ ++|||||+|.+.++|..|+. .+..+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5789999999999999999999999999999999764 68999999999999975432 2345589999998776
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 193
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.41 E-value=2.9e-13 Score=132.40 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCCceEEEcCCCCCC---------cHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 125 EKPQTKVYVGKIAPTA---------DSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 125 ~~~~~tlfVgnLp~~~---------te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
....++||||||+..+ ++++|+.+|+.||.|.+|.|+.+ +|||||+|.+.++|..|+..|||..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568999999999998 79999999999999999999864 69999999999999999999999999
Q ss_pred ------------CCeEEEEEEchhhH
Q 008385 196 ------------DGQELMLKVDQATR 209 (567)
Q Consensus 196 ------------~gr~l~V~~a~~~~ 209 (567)
.|+.|.|.|+....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997653
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.41 E-value=5.5e-13 Score=124.04 Aligned_cols=76 Identities=17% Similarity=0.252 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEch
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQ 206 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~ 206 (567)
..++|||+|||+.+++++|+.+|+.||.|..+ ..+|.++|||||+|.+.++|..|+..|||..|+|+.|.|.|+.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 57899999999999999999999999988766 4589999999999999999999999999999999999999986
Q ss_pred h
Q 008385 207 A 207 (567)
Q Consensus 207 ~ 207 (567)
.
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 5
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.36 E-value=9.4e-13 Score=126.58 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCCce--eEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCe----E
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCGTV--KSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQ----E 199 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G~v--~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr----~ 199 (567)
.+.++|||+|||+.+|+++|+.+|+.||.| .++.++.+. |.++|||||+|.+.++|..||..|||..|.|. +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 357899999999999999999999999999 899998874 66679999999999999999999999999876 5
Q ss_pred EEEEEc
Q 008385 200 LMLKVD 205 (567)
Q Consensus 200 l~V~~a 205 (567)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 676654
No 196
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.4e-12 Score=111.45 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCc-----------HHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCce
Q 008385 126 KPQTKVYVGKIAPTAD-----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFN 194 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~t-----------e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~ 194 (567)
.+.++|+|.||..... +++|+.+|++||.|..|.| .++ .++|||||+|.+.++|..||..|||..
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 3588999999955443 5799999999999999965 443 389999999999999999999999999
Q ss_pred eCCeEEEEEEchhh
Q 008385 195 IDGQELMLKVDQAT 208 (567)
Q Consensus 195 i~gr~l~V~~a~~~ 208 (567)
|+|+.|.|.++...
T Consensus 89 ~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 89 FGGRQITAQAWDGT 102 (112)
T ss_dssp ETTEECEEEECCSC
T ss_pred ECCcEEEEEEeCCC
Confidence 99999999998663
No 197
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.34 E-value=3.1e-13 Score=124.10 Aligned_cols=133 Identities=10% Similarity=-0.006 Sum_probs=84.9
Q ss_pred EEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccC
Q 008385 157 SWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGK 236 (567)
Q Consensus 157 ~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~n 236 (567)
+++|+.+. ..++|||||+|.+.++|.+|+..+++....+..+.+.......... .................+||+|
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~n 77 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVT--EGSHHHHHHMDVEGMTSLKVDN 77 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEE--CCCCCSSCCCCCCBCCEEEEES
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccc--ccccccccccCCCCCCEEEEeC
Confidence 56777773 4789999999999999999998887643333333322111100000 0000000111122234479999
Q ss_pred CCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 237 EDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 237 l~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 78 l~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 78 LTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred CCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 999999999998843 111111111123568999999999999999999999999885
No 198
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.34 E-value=3.4e-12 Score=109.24 Aligned_cols=82 Identities=17% Similarity=0.078 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCC--CCc--------HHHHHHHHhhCCceeEEEEeecCCC--CCCccEEEEEeCCHHHHHHHHHHhCCc
Q 008385 126 KPQTKVYVGKIAP--TAD--------SDFVLSVLKVCGTVKSWKRAQYPSN--GTPKGFGFCEFESAEGVLRALRLLNKF 193 (567)
Q Consensus 126 ~~~~tlfVgnLp~--~~t--------e~~L~~~F~~~G~v~~~~i~~~~~t--g~~kg~aFVef~~~~~A~~Ai~~Lng~ 193 (567)
.+++.|+|.|+-. .+. .++|+.+|++||.|.+|.|+.++.+ +.++|||||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 3578899999833 332 3589999999999999999988654 468999999999999999999999999
Q ss_pred eeCCeEEEEEEchh
Q 008385 194 NIDGQELMLKVDQA 207 (567)
Q Consensus 194 ~i~gr~l~V~~a~~ 207 (567)
.|+|+.|.|.+...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998755
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.31 E-value=1e-12 Score=112.27 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=64.9
Q ss_pred EcCCCCCCcHHHHHHHH------------hhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 133 VGKIAPTADSDFVLSVL------------KVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 133 VgnLp~~~te~~L~~~F------------~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
+.||++.+++++|+.+| ++||.|.+|.|+.+. +|.++|||||+|.+.++|.+|+..|||..|+|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67788888888777766 999999999999885 58999999999999999999999999999999999
Q ss_pred EEEEc
Q 008385 201 MLKVD 205 (567)
Q Consensus 201 ~V~~a 205 (567)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99875
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=6.6e-12 Score=109.66 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCC-----CcHHHHHHHHhhCCceeEEEEeecCC----CCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008385 127 PQTKVYVGKIAPT-----ADSDFVLSVLKVCGTVKSWKRAQYPS----NGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (567)
Q Consensus 127 ~~~tlfVgnLp~~-----~te~~L~~~F~~~G~v~~~~i~~~~~----tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g 197 (567)
++++|+|.|+-.. --+++|+..|++||.|.+|.|+.++. ++.++||+||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 5789999999531 23579999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEEEchh
Q 008385 198 QELMLKVDQA 207 (567)
Q Consensus 198 r~l~V~~a~~ 207 (567)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998765
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.29 E-value=6.2e-12 Score=125.27 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeC---CeEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNID---GQELML 202 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L-ng~~i~---gr~l~V 202 (567)
+.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ .+|.++|||||+|.+.++|..||..| +|..+. |+.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 59999999999999999999999999 555555 999999
Q ss_pred EEchh
Q 008385 203 KVDQA 207 (567)
Q Consensus 203 ~~a~~ 207 (567)
.++..
T Consensus 174 ~~~~~ 178 (261)
T 3sde_A 174 EPMEQ 178 (261)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 88765
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.29 E-value=7e-12 Score=119.11 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr~l~V~ 203 (567)
.+.++|||+|||..+++++|+.+|+.|| .|..|.|+.+ .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999999764 2699999999999999999999999999 9999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
|+..
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9865
No 203
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.25 E-value=1.3e-11 Score=120.57 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCcHHHHHHHHhhCC-ceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC-CeEEEEE
Q 008385 126 KPQTKVYVGKIAPTADSDFVLSVLKVCG-TVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID-GQELMLK 203 (567)
Q Consensus 126 ~~~~tlfVgnLp~~~te~~L~~~F~~~G-~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~-gr~l~V~ 203 (567)
.+.++|||+|||..+++++|+.+|+.|| .|..|.|+.. .+|||||+|.+.++|..|+..|||..|+ |+.|.|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 4579999999999999999999999999 9999999653 3689999999999999999999999999 9999999
Q ss_pred Echh
Q 008385 204 VDQA 207 (567)
Q Consensus 204 ~a~~ 207 (567)
|+..
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9865
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.19 E-value=3.3e-11 Score=123.93 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=66.5
Q ss_pred CCCCceEEEcC--CCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC---Ce-
Q 008385 125 EKPQTKVYVGK--IAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID---GQ- 198 (567)
Q Consensus 125 ~~~~~tlfVgn--Lp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~---gr- 198 (567)
..++.+||||| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+||..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45688999999 588999999999999999999987743 4699999999999999999999999883 45
Q ss_pred -EEEEEEchh
Q 008385 199 -ELMLKVDQA 207 (567)
Q Consensus 199 -~l~V~~a~~ 207 (567)
.|.|.|...
T Consensus 89 ~~ly~~~~~~ 98 (345)
T 3tht_A 89 ITLYLNFVEK 98 (345)
T ss_dssp EECEEEECSS
T ss_pred eEEEEEEeec
Confidence 677877754
No 205
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.16 E-value=5.1e-12 Score=115.08 Aligned_cols=123 Identities=18% Similarity=0.118 Sum_probs=86.8
Q ss_pred EEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh-CCceeCCeEEEEEEchhhHHHHHhhhh-hhhhcccccccccccccc
Q 008385 158 WKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL-NKFNIDGQELMLKVDQATREYLERYVD-KKTENTKKLKETQDAGAG 235 (567)
Q Consensus 158 ~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L-ng~~i~gr~l~V~~a~~~~~~~~~~~~-~k~~~~~~~~~~~~~~v~ 235 (567)
+.|..+ ....+|+++|+|.+.+.|.+|+..| ||..|+| .|.|.++............ ..............+||+
T Consensus 3 ~al~l~--g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp EEEEEC--CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEE
T ss_pred eEeeec--cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEe
Confidence 344443 4577899999999999999999999 9999999 9999876542111000000 000011122233446999
Q ss_pred CCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 236 KEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 236 nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
||+..+++++|.+++. ++.+.. .++|||||+|.+.++|..||..||+.
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~----------~~~g~afV~f~~~~~a~~A~~~l~g~ 133 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVAR----------NPPGFAFVEFEDPRDAADAVRELDGR 133 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECS----------SSCSEEEEEESSHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEee----------CCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 9999999999998844 222222 16899999999999999999999884
No 206
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=96.94 Aligned_cols=74 Identities=15% Similarity=0.120 Sum_probs=61.5
Q ss_pred CceEEEcCCC-------CCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEE
Q 008385 128 QTKVYVGKIA-------PTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQEL 200 (567)
Q Consensus 128 ~~tlfVgnLp-------~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l 200 (567)
...|-|.-.. ..+++++|+.+|++||.|..|.|+ +.++|||||+|.+.++|..||..+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 3455555433 468999999999999999999987 47899999999999999999997555 679999
Q ss_pred EEEEchhh
Q 008385 201 MLKVDQAT 208 (567)
Q Consensus 201 ~V~~a~~~ 208 (567)
.|.|+...
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99987653
No 207
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.09 E-value=4.2e-10 Score=97.52 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=65.4
Q ss_pred CCceEEEcCCCCCCc----------HHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 127 PQTKVYVGKIAPTAD----------SDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 127 ~~~tlfVgnLp~~~t----------e~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
+++.|.+.|+-.... +++|+..|++||.|.+|.|..+. ++|||||+|.+.++|.+|+..|||..|+
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 366788888854322 23889999999999999987652 5899999999999999999999999999
Q ss_pred CeEEEEEEchh
Q 008385 197 GQELMLKVDQA 207 (567)
Q Consensus 197 gr~l~V~~a~~ 207 (567)
|+.|.|.++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999854
No 208
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.8e-09 Score=88.31 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred CCCceEEEcCCCC----CCcH----HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 008385 126 KPQTKVYVGKIAP----TADS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG 197 (567)
Q Consensus 126 ~~~~tlfVgnLp~----~~te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g 197 (567)
++..||+|.-++. ++-+ .+|...|+.||.|..++|+.+ .+||+|.+.++|.+||. |||+.|+|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 3467888887762 3333 479999999999999999887 48999999999999999 99999999
Q ss_pred eEEEEEEchh
Q 008385 198 QELMLKVDQA 207 (567)
Q Consensus 198 r~l~V~~a~~ 207 (567)
+.|+|.++.+
T Consensus 76 r~LkV~lkt~ 85 (91)
T 2dnr_A 76 RTITIALKSP 85 (91)
T ss_dssp EEEEEEECCC
T ss_pred eEEEEEeCCC
Confidence 9999987654
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.91 E-value=4.1e-09 Score=91.70 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCC-CcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHHHh--CCceeCCeEEE
Q 008385 126 KPQTKVYVGKIAPT-ADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALRLL--NKFNIDGQELM 201 (567)
Q Consensus 126 ~~~~tlfVgnLp~~-~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~-~~~A~~Ai~~L--ng~~i~gr~l~ 201 (567)
..++.|||+||+.. ++.++|+.+|+.||.|.+|.++.+.. +|||.|.+ ..+|..|+..| +|..|.|..+.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 35899999999999 99999999999999999999988753 69999999 89999999999 47899999888
Q ss_pred EEEchh--hHHHHHhhhh
Q 008385 202 LKVDQA--TREYLERYVD 217 (567)
Q Consensus 202 V~~a~~--~~~~~~~~~~ 217 (567)
+.+... .+.|+.....
T Consensus 90 ~evL~GeeE~~yw~Ki~e 107 (121)
T 1owx_A 90 WEVLEGEVEKEALKKIIE 107 (121)
T ss_dssp EEECCHHHHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHH
Confidence 877643 3455555443
No 210
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.5e-08 Score=83.23 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=60.7
Q ss_pred CCCceEEEcCCCCC------CcH---HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 126 KPQTKVYVGKIAPT------ADS---DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 126 ~~~~tlfVgnLp~~------~te---~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
++..||+|.-++.. ..+ .+|...|..||.|..++|+.+. +||+|.+.++|.+||. |||+.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 35789999988743 332 3689999999999999999882 9999999999999999 9999999
Q ss_pred CeEEEEEE
Q 008385 197 GQELMLKV 204 (567)
Q Consensus 197 gr~l~V~~ 204 (567)
|+.|+|.+
T Consensus 84 Gr~L~V~~ 91 (95)
T 1ufw_A 84 GRAVKISG 91 (95)
T ss_dssp TEEEEEEC
T ss_pred CeEEEEec
Confidence 99999975
No 211
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.72 E-value=7.3e-09 Score=86.66 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=51.1
Q ss_pred cccccccCCCcccchhhhcCCCCCCc---ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE---NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~---~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+.+||+||++.+|+++|.+++...+ +.......+..+|+++|||||+|.+.++|.+||+.||+.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 34479999999999999999854211 222222234788999999999999999999999999974
No 212
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=84.73 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=48.2
Q ss_pred ccccccCCCcccchhhhcCCCC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
+++||+|||.++++++|++++. ...+.......+..+|.++|||||+|.+.++|.+||+.+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~ 66 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQH 66 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCC
Confidence 5679999999999999998843 11111111123468899999999999999999999987743
No 213
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.65 E-value=6.6e-09 Score=92.79 Aligned_cols=108 Identities=6% Similarity=-0.012 Sum_probs=51.9
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCC
Q 008385 171 GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPT 250 (567)
Q Consensus 171 g~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ 250 (567)
-|.|+.|.+...+..|+..|+|....|+.- +.+... .........+||+||+..+++++|.+++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~~~---------------~~~~~~~~~l~V~nLp~~~te~~L~~~F 68 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYGRP---------------PPDVEGMTSLKVDNLTYRTSPDTLRRVF 68 (135)
T ss_dssp -------------------------------CCSCCS---------------CSSGGGCCCEEEECCCSSCHHHHHHHHH
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcCCC---------------CCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 478899999999999999998877666532 111111 1112223346999999999999999884
Q ss_pred CCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 251 KSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 251 ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+ .+.......+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 69 ~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~ 113 (135)
T 2lea_A 69 EKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAV 113 (135)
T ss_dssp GGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCC
T ss_pred HhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCE
Confidence 411 12111112235689999999999999999999999988753
No 214
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=6.8e-08 Score=93.45 Aligned_cols=69 Identities=19% Similarity=0.072 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHhhCCceeEEEEeecC----CCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchh
Q 008385 139 TADSDFVLSVLKVCGTVKSWKRAQYP----SNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQA 207 (567)
Q Consensus 139 ~~te~~L~~~F~~~G~v~~~~i~~~~----~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~ 207 (567)
.-.+++|...|++||.|.++.|+.+. .+|.++||+||+|.+.++|.+|+..|||..|+|+.|.|.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 34567999999999999999998554 4558999999999999999999999999999999999998764
No 215
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=85.73 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=48.2
Q ss_pred ccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+|||..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+||+.||+.
T Consensus 22 lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 84 (99)
T 4fxv_A 22 LIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL 84 (99)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC
Confidence 5999999999999999983311 1111111123678999999999999999999999999875
No 216
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.52 E-value=3.8e-08 Score=84.59 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=49.8
Q ss_pred ccccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|+++ ++...+.......+..+|+++|||||+|.+.++|.+||+.||+.
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~ 71 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLT 71 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999999 44211221111123678999999999999999999999999985
No 217
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=1.4e-07 Score=76.62 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=50.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|.+++...+ +.......+..+|.++|||||+|.+.++|..|+..||+..
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (85)
T 1x4e_A 6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASG 71 (85)
T ss_dssp CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCe
Confidence 3469999999999999999955222 2111112335789999999999999999999999999863
No 218
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.51 E-value=2.3e-08 Score=92.24 Aligned_cols=117 Identities=16% Similarity=0.043 Sum_probs=50.9
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeEEEEEEchhhHHHHHhhhhh-------hhhccccccccccccccCCCcccchhh
Q 008385 175 CEFESAEGVLRALRLLNKFNID--GQELMLKVDQATREYLERYVDK-------KTENTKKLKETQDAGAGKEDESVQSVE 245 (567)
Q Consensus 175 Vef~~~~~A~~Ai~~Lng~~i~--gr~l~V~~a~~~~~~~~~~~~~-------k~~~~~~~~~~~~~~v~nl~~~~~e~~ 245 (567)
.+|.+.++|..|+..|++.... |+.+.+.++.... ...|... .............+||+||+..+++++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~--~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 88 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA--IHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDE 88 (165)
T ss_dssp ---------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc--ccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHH
Confidence 7899999999999999987765 6666655432211 1111111 011111223344579999999999999
Q ss_pred hcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 246 KNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 246 l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
|..++. ...+.......+..+|.++|||||+|.+.++|..||..||+.
T Consensus 89 L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 137 (165)
T 1rk8_A 89 IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 137 (165)
T ss_dssp HHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 998844 111111111123578999999999999999999999999884
No 219
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.48 E-value=3.5e-08 Score=81.32 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=47.5
Q ss_pred ccccCCCcccchhhhcCCCCCC---cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP---ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~---~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++..+ .+.......+..+|+++|||||+|.+.++|.+||+.||+.
T Consensus 4 l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~ 68 (90)
T 3p5t_L 4 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 68 (90)
T ss_dssp CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGS
T ss_pred EEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCC
Confidence 5999999999999999883311 1221111123578999999999999999999999999984
No 220
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.44 E-value=4.6e-08 Score=82.41 Aligned_cols=65 Identities=8% Similarity=-0.023 Sum_probs=49.5
Q ss_pred cccccccCCCc------ccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDE------SVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~------~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+++||+|||. .+++++|.++ ++...+.......+..+|+++|||||+|.+.++|.+||..||+.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc
Confidence 34579999999 9999999988 33111211111123677999999999999999999999999974
No 221
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.39 E-value=1.7e-07 Score=80.34 Aligned_cols=60 Identities=12% Similarity=-0.114 Sum_probs=46.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+||+||++.+++++|++++..+.+... ....+.+|+++|||||+|.+.++|.+|| .+|+
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~~v~~v-~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~ 77 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGLRVDAV-HLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNR 77 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTSCCCEE-EECCCTTCCCCSEEEEECSSHHHHHHHH-HTTT
T ss_pred EEEEeCCCCCCCHHHHHHHhccCCeeEE-EEEECCCCCCCeEEEEEECCHHHHHHHH-hcCC
Confidence 3699999999999999999663332221 1112345999999999999999999999 5665
No 222
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=1.9e-07 Score=78.51 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=50.3
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|++++..+..+... .+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~--~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIV--TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDG 77 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEE--ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEE--ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34446999999999999999995532211111 23568999999999999999999999999885
No 223
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=3.4e-07 Score=76.93 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=49.9
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 77 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 77 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999999843 211221111233578999999999999999999999999874
No 224
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.36 E-value=8.1e-08 Score=86.08 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=46.7
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEEEchhhHHHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCC
Q 008385 171 GFGFCEFESAEGVLRALRLLNKFNIDGQELMLKVDQATREYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPT 250 (567)
Q Consensus 171 g~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~~a~~~~~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~ 250 (567)
|+||..|.-+..+..++..+... .+|...--...... ..........+||+||++.+++++|++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~-------------~~~~~~~~~~lfV~nLp~~~te~dL~~~F 67 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSE-------------FTVQSTTGHCVHMRGLPYKATENDIYNFF 67 (139)
T ss_dssp ---------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHH
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcc-------------cCCCCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 68888888887777776653322 23322211100000 00111223346999999999999999995
Q ss_pred CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 251 KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 251 ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+.+.. .....+.+|+++|||||+|.+.++|.+|| .+|+
T Consensus 68 ~~~Gi~~-v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g 107 (139)
T 2hgn_A 68 SPLNPVR-VHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDR 107 (139)
T ss_dssp CSCCCSE-EECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCS
T ss_pred HhcCCeE-EEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCC
Confidence 5322222 11222345999999999999999999999 5555
No 225
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.36 E-value=2.2e-07 Score=77.36 Aligned_cols=63 Identities=6% Similarity=-0.019 Sum_probs=48.4
Q ss_pred cccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 67 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGY 67 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 469999999999999998833 111211111123567999999999999999999999999875
No 226
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2.7e-07 Score=79.55 Aligned_cols=63 Identities=11% Similarity=0.072 Sum_probs=46.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCC---CCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKES---HDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~---g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||+..+++++|++++..++.+......+..+ |+++|||||+|.+.++|.+||+.|++
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~ 74 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE 74 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh
Confidence 3369999999999999999855222111111222334 89999999999999999999999844
No 227
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.33 E-value=3e-07 Score=78.27 Aligned_cols=62 Identities=11% Similarity=-0.168 Sum_probs=46.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~---~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||++.+++++|++++..+.. +.......+..|+++|||||+|.+.++|.+||. +|+
T Consensus 12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (107)
T 2lmi_A 12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHR 76 (107)
T ss_dssp CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCc
Confidence 34699999999999999999653222 121122223349999999999999999999998 765
No 228
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.9e-07 Score=75.49 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=49.3
Q ss_pred ccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 70 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 70 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999999843 211222112233568999999999999999999999999884
No 229
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=3.3e-07 Score=76.59 Aligned_cols=64 Identities=8% Similarity=-0.094 Sum_probs=49.1
Q ss_pred ccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998833 211211111223568999999999999999999999999875
No 230
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.32 E-value=3.1e-07 Score=76.24 Aligned_cols=65 Identities=9% Similarity=0.090 Sum_probs=49.3
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-cccc-CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKD-NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~-~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|.+++..+. +... ....+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 72 (96)
T 1x5t_A 6 SGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQY 72 (96)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 3469999999999999998833111 2111 112235789999999999999999999999988753
No 231
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.31 E-value=2.4e-07 Score=77.51 Aligned_cols=65 Identities=12% Similarity=-0.019 Sum_probs=49.5
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccc--------cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLK--------DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k--------~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|++++..++ +.. .....+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999999844211 111 111123578999999999999999999999999885
No 232
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=4.9e-07 Score=77.55 Aligned_cols=66 Identities=17% Similarity=0.003 Sum_probs=50.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-cc--------ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NL--------KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~--------k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++..+. +. ......+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 34469999999999999999844221 21 11112235789999999999999999999999999853
No 233
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.31 E-value=2.6e-07 Score=78.25 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=49.1
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++. .+..+. ...+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~--i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 78 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELT--VLKDRFTGMHKGCAFLTYCERESALKAQSALHEQ 78 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEE--CCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE--EEecCCCCCcceEEEEEECCHHHHHHHHHHhcCC
Confidence 3469999999999999998843 222111 1223568999999999999999999999999984
No 234
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-07 Score=76.66 Aligned_cols=61 Identities=7% Similarity=-0.085 Sum_probs=45.9
Q ss_pred cccccCCCccc------chhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESV------QSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~------~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+|||..+ ++++|.++ ++...+..... ...+|+++|||||+|.+.++|.+|+..||+.
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~ 70 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--PEEDGKTKGYIFLEYASPAHAVDAVKNADGY 70 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--CCBTTBCCCEEEEEESSHHHHHHHHTTSSSC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--cCCCCcEeEEEEEEECCHHHHHHHHHHhcCc
Confidence 35999999999 66888887 33111211111 1468999999999999999999999988874
No 235
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=4.7e-07 Score=74.82 Aligned_cols=65 Identities=8% Similarity=-0.002 Sum_probs=50.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..+. +.......+..+|.++|||||+|.+.++|.+|++.||+.
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 81 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNK 81 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999999999999999855222 222222234567999999999999999999999999874
No 236
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.30 E-value=5.1e-07 Score=79.74 Aligned_cols=67 Identities=15% Similarity=0.005 Sum_probs=51.2
Q ss_pred cccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.....+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 3445579999999999999999844 212222112234678999999999999999999999999884
No 237
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=2.5e-07 Score=78.01 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=50.3
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAE 79 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCE
Confidence 34469999999999999999844 2122221122235679999999999999999999999998853
No 238
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.30 E-value=2.4e-07 Score=74.66 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=48.1
Q ss_pred ccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||+..+++++|.+++... .+.......+..+|.++|||||+|.+.++|..|+..||+..
T Consensus 4 l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~ 67 (83)
T 3md1_A 4 LFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 67 (83)
T ss_dssp EEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCe
Confidence 5999999999999999883311 11111111235689999999999999999999999998753
No 239
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=1.3e-07 Score=80.11 Aligned_cols=55 Identities=5% Similarity=-0.151 Sum_probs=43.9
Q ss_pred cccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+||+||+..+++++|.+++. ++.+.. +..|.++|||||+|.+.++|..||. +++
T Consensus 13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~------d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~ 73 (103)
T 1s79_A 13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR------TLHKAFKGSIFVVFDSIESAKKFVE-TPG 73 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEEC------CCTTSCCCEEEEEESSHHHHHHHHT-SSC
T ss_pred EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEE------CCCCCCccEEEEEECCHHHHHHHHH-cCC
Confidence 369999999999999998833 222332 2239999999999999999999998 554
No 240
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=3.2e-07 Score=77.03 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=49.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|++++..+..++. ....+|+++|||||+|.+.++|.+||..||+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~---~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 76 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFIKV---PQNQNGKSKGYAFIEFASFEDAKEALNSCNKR 76 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEEEC---CBCSSSCBCSEEEEECSSHHHHHHHHHHTSSE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEEEE---EECCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 444799999999999999999553332221 12467999999999999999999999999874
No 241
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=2.7e-07 Score=78.21 Aligned_cols=60 Identities=12% Similarity=-0.097 Sum_probs=46.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~-~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ 289 (567)
..+||+||++.+++++|++++..+..+.. .....+.+|+++|||||+|.+.++|.+||..
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~ 76 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK 76 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh
Confidence 34699999999999999999663332211 1122247899999999999999999999986
No 242
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.29 E-value=3.9e-07 Score=76.57 Aligned_cols=62 Identities=18% Similarity=0.018 Sum_probs=48.2
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCC-CCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNK-ESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~-~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..+++.......+. .+|+++|||||+|.+.++|.+|| .||+.
T Consensus 21 ~l~V~nLp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~ 83 (100)
T 2j76_E 21 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 83 (100)
T ss_dssp EEEESCCSSCCSSSHHHHHSCSSCEEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCC
Confidence 3699999999999999999553332222222223 58999999999999999999999 88874
No 243
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=3.5e-07 Score=77.09 Aligned_cols=66 Identities=9% Similarity=0.077 Sum_probs=50.5
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++..+. +.......+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 81 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFG 81 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCe
Confidence 34469999999999999999955222 2111111235689999999999999999999999998753
No 244
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.28 E-value=1.7e-07 Score=79.06 Aligned_cols=64 Identities=14% Similarity=0.012 Sum_probs=49.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..+.+.......+..+|.++|||||+|.+.++|.+|| .||+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~gi~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 78 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLSIRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGA 78 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCCceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCC
Confidence 34469999999999999999955323322222234678999999999999999999999 78874
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.28 E-value=2.8e-07 Score=81.55 Aligned_cols=64 Identities=6% Similarity=-0.065 Sum_probs=48.5
Q ss_pred cccccccCCCcccchhhhcCCCCCC-cccc--cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSP-ENLK--DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k--~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||++.+++++|++++..+ .+.. .....+..+|+++|||||+|.+. +|.+||..||+.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 3446999999999999999984411 1100 11112366899999999999999 999999999985
No 246
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.28 E-value=3.2e-07 Score=75.99 Aligned_cols=64 Identities=16% Similarity=-0.071 Sum_probs=49.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++..+. +.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999999855222 111111123678999999999999999999999999874
No 247
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.28 E-value=1.9e-07 Score=78.95 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=48.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++..++.+.......+.+|.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 80 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQ 80 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCc
Confidence 344699999999999999998441111111111113479999999999999999999999998853
No 248
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.28 E-value=2.7e-07 Score=81.17 Aligned_cols=63 Identities=11% Similarity=-0.123 Sum_probs=47.4
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccc-cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLK-DNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k-~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
...+||+||++.+++++|++++..+.+.. ......+..|+++|||||+|.+.++|.+||...+
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~ 105 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHK 105 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSCEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCC
Confidence 34479999999999999999966334331 1112223449999999999999999999998643
No 249
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.27 E-value=3.3e-07 Score=79.01 Aligned_cols=62 Identities=5% Similarity=-0.143 Sum_probs=47.0
Q ss_pred ccccccCCCcccchhhhcCCCCCCccc-ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENL-KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~-k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||+..+++++|.+++..+..+ .......+.+|+++|||||+|.+.++|.+||.. |+
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~ 78 (114)
T 2cpy_A 16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HR 78 (114)
T ss_dssp CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CS
T ss_pred cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CC
Confidence 346999999999999999995533322 111122234899999999999999999999876 54
No 250
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=5.3e-07 Score=75.36 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=48.1
Q ss_pred cccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|++++..+ .+.......+..+|.++|||||+|.+.++|.+||+ ||+.
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~ 74 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFH 74 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCC
Confidence 3446999999999999999984411 12111112335679999999999999999999998 7764
No 251
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=3.2e-07 Score=76.55 Aligned_cols=64 Identities=16% Similarity=-0.076 Sum_probs=49.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++..+. +.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 80 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDR 80 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999999855222 111111223678999999999999999999999999874
No 252
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=3.6e-07 Score=76.99 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=48.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|.+++..+..+.......+ +|.++|||||+|.+.++|.+||..||+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 79 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRI 79 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34699999999999999999552221111111113 88999999999999999999999998853
No 253
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.27 E-value=2.7e-07 Score=74.67 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=49.0
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 72 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 72 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998833 111111111122578899999999999999999999999875
No 254
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.26 E-value=2.5e-07 Score=80.08 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=47.1
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..++ +....... +.+|.++|||||+|.+.++|.+||..||+.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~-~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 71 (116)
T 2fy1_A 9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIK-DRTSKSRGFAFITFENPADAKNAAKDMNGK 71 (116)
T ss_dssp EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEEC-STTTTCCCEEEEECSSHHHHHHHHHHCSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEE-CCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 469999999999999998833111 11111111 338999999999999999999999998874
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=2.7e-07 Score=77.36 Aligned_cols=65 Identities=18% Similarity=0.132 Sum_probs=48.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++.+.......+.+|.++|||||+|.+.++|.+||..||+.
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999999844211111111111338999999999999999999999999874
No 256
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.8e-07 Score=79.13 Aligned_cols=61 Identities=5% Similarity=-0.171 Sum_probs=46.3
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||++.+++++|++++..+.+... ....+.+|+++|||||+|.+.++|.+||+ +|+
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~~~v-~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~ 76 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLNPMRV-HIEIGPDGRVTGEADVEFATHEDAVAAMA-KDK 76 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCCCSEE-EEEESSSSCEEEEEEEECSSSHHHHHHHT-TSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCceEE-EEEECCCCCEeeEEEEEECCHHHHHHHHH-hCC
Confidence 34699999999999999999653322221 11113489999999999999999999995 454
No 257
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=4.2e-07 Score=76.81 Aligned_cols=63 Identities=17% Similarity=0.007 Sum_probs=48.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCC-CCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKES-HDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~-g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..+.+.......+..+ |.++|||||+|.+.++|.+|| .||+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~Gi~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 79 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEE 79 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSCEEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCCceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCC
Confidence 4469999999999999999955333322222223455 999999999999999999999 88874
No 258
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.6e-07 Score=82.24 Aligned_cols=63 Identities=11% Similarity=-0.120 Sum_probs=48.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCccccc-CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKD-NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~-~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||++.+++++|.+++..+..+.. ....+..+|+++|||||+|.+.++|.+||. ||+.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~ 89 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQ 89 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSB
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCC
Confidence 34699999999999999999553222111 122235789999999999999999999999 7763
No 259
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.26 E-value=2.5e-07 Score=82.60 Aligned_cols=62 Identities=6% Similarity=-0.208 Sum_probs=46.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~---~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||++.+++++|++++..+.. +.......+..|+++|||||+|.+.++|.+||+ +|+
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g 109 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDR 109 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCC
Confidence 34699999999999999999553222 111111123349999999999999999999999 776
No 260
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.26 E-value=3.4e-07 Score=72.33 Aligned_cols=60 Identities=13% Similarity=0.016 Sum_probs=44.6
Q ss_pred ccccCCCcccchhhhcCCC-CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPT-KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~-ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
+||+||+..+++++|.+++ +...+.......+..+|.++|||||+|.+.++|.+|++ +++
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~ 62 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHF 62 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCC
Confidence 4999999999999999883 31112111112235689999999999999999999987 554
No 261
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=3.8e-07 Score=77.09 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=49.3
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 80 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998833 211211111223568999999999999999999999998874
No 262
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.25 E-value=1.6e-07 Score=85.99 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=48.8
Q ss_pred ccccCCCcccchhhhcCCCC-CC--cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SP--ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~--~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|.+++. .. .+.......+..+|+++|||||+|.+.++|.+||..||+.
T Consensus 58 lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~ 122 (156)
T 3n9u_C 58 VYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGK 122 (156)
T ss_dssp EEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTC
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 59999999999999998843 11 2222112233678999999999999999999999999875
No 263
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.25 E-value=6e-07 Score=76.05 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=48.7
Q ss_pred cccccccCCCcccchhhhcCCCCCC-cccccCCCCC-CCCCCCCceEEEEeCCHHHHHHHHHHH-HHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGN-KESHDPTNFGVVTEEDRKADQEALEKL-TCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~-~~~g~~kGfgFV~f~~~e~a~kAle~l-n~~ 293 (567)
...+||+||+..+++++|.+++..+ .+.......+ ..+|.++|||||+|.+.++|.+||..| |+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 82 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHST 82 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCC
Confidence 3446999999999999999883311 1211111223 458999999999999999999999999 553
No 264
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=4.9e-07 Score=77.15 Aligned_cols=64 Identities=8% Similarity=-0.059 Sum_probs=48.5
Q ss_pred ccccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
....+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+||..||
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 34457999999999999999883311 11111111235689999999999999999999999998
No 265
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.24 E-value=4.9e-07 Score=79.15 Aligned_cols=66 Identities=14% Similarity=-0.030 Sum_probs=49.8
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||+.||+..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 88 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQD 88 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCe
Confidence 34579999999999999998833 1112111111235689999999999999999999999998843
No 266
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.24 E-value=4.4e-07 Score=76.28 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=49.6
Q ss_pred cccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++. .+..+. ...+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~--i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV--VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS 78 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE--ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCE
Confidence 34469999999999999998843 222111 11235689999999999999999999999999853
No 267
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.23 E-value=1.3e-07 Score=81.75 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=45.3
Q ss_pred ccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||+..+++++|.+++. ++.+.. ..+.++|||||+|.+.++|.+||..|++..
T Consensus 8 lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~-------d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~ 69 (115)
T 4f25_A 8 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVC-------DENGSKGYGFVHFETQEAAERAIEKMNGML 69 (115)
T ss_dssp EEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE-------ETTEEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEECCCCCCCCHHHHHHHHhccCCEEEEEEee-------cCCCCCceEEEEECCHHHHHHHHHHcCCCE
Confidence 59999999999999999944 222332 124579999999999999999999998853
No 268
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.23 E-value=4.8e-07 Score=77.18 Aligned_cols=65 Identities=17% Similarity=-0.023 Sum_probs=49.5
Q ss_pred cccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|..||..||+.
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 91 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 91 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCC
Confidence 3447999999999999999884411 1111111123578999999999999999999999999885
No 269
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.23 E-value=2.8e-07 Score=74.93 Aligned_cols=63 Identities=6% Similarity=0.062 Sum_probs=47.9
Q ss_pred cccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|++++..+ .+.......+..+|.++|||||+|.+.++|..|+..||+.
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 71 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 71 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 36999999999999999884311 1111111122468999999999999999999999999874
No 270
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.23 E-value=2.7e-07 Score=80.16 Aligned_cols=63 Identities=8% Similarity=-0.180 Sum_probs=47.1
Q ss_pred ccccccCCCcccchhhhcCCCCCCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~---~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||++.+++++|++++..+.. +.......+..|+++|||||+|.+.++|.+||. +|+.
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~ 83 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRE 83 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCC
Confidence 34699999999999999999653322 111111123349999999999999999999999 7663
No 271
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=1e-05 Score=67.78 Aligned_cols=75 Identities=9% Similarity=0.052 Sum_probs=68.6
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhC-----CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVC-----GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~-----G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
..++|-+-|||..+++..|+.|+..| |.|+.+.++.|. |-|+|+|.+...|.+|.-.|+|..|.|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47889999999999999999999999 999999998884 6899999999999999988999999999999
Q ss_pred EEEchh
Q 008385 202 LKVDQA 207 (567)
Q Consensus 202 V~~a~~ 207 (567)
|.-...
T Consensus 94 ~gTv~e 99 (117)
T 2l9w_A 94 SGTIND 99 (117)
T ss_dssp EECHHH
T ss_pred ecCHHH
Confidence 975443
No 272
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.23 E-value=3.7e-07 Score=75.53 Aligned_cols=66 Identities=15% Similarity=0.005 Sum_probs=49.7
Q ss_pred ccccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 80 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 80 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 34457999999999999999883311 1111111123567899999999999999999999999874
No 273
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=7.3e-07 Score=76.39 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=47.4
Q ss_pred cccccccCCCcccchhhhc---CCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKN---EPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~---e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
.+.+||+||+..+++++|. +++. .+.+..+. ....++.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~--~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNST--SYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCS--SCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCC--CcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 3446999999999999998 7744 22222211 112345777999999999999999999999863
No 274
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.22 E-value=1.3e-07 Score=79.41 Aligned_cols=63 Identities=19% Similarity=0.121 Sum_probs=47.2
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
.+||+||+..+++++|++++..++.+......+..+|.++|||||+|.+.++|.+||+ ||+..
T Consensus 19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~ 81 (101)
T 1fj7_A 19 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLK 81 (101)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcE
Confidence 4699999999999999988441110000111235679999999999999999999998 88753
No 275
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=3e-07 Score=76.81 Aligned_cols=65 Identities=12% Similarity=0.075 Sum_probs=49.2
Q ss_pred cccccccCCCcccchhhhcCCCC-CCccc-ccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENL-KDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~-k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. ...+. ......+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 75 (99)
T 2div_A 9 AASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGK 75 (99)
T ss_dssp SSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTS
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCC
Confidence 34469999999999999998843 11111 1111123568999999999999999999999999874
No 276
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.21 E-value=4e-07 Score=72.18 Aligned_cols=60 Identities=15% Similarity=-0.002 Sum_probs=46.1
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
+||+||+..+++++|+++ .+...+.......+..+|.++|||||+|.+.++|.+|+..++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 499999999999999988 431112111112235679999999999999999999999877
No 277
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.21 E-value=4.6e-07 Score=78.00 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=48.7
Q ss_pred ccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 26 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 90 (115)
T 2cpz_A 26 ANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGF 90 (115)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCC
Confidence 346999999999999999884411 1111111123568999999999999999999999999885
No 278
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=5.5e-07 Score=77.34 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=48.5
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
.+||+||+..+++++|++++..+..+.......+.+|.++|||||+|.+.++|.+||..||+..
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 90 (114)
T 1x5o_A 27 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKF 90 (114)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 4699999999999999999552221111111112389999999999999999999999998854
No 279
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=4.5e-07 Score=77.82 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=48.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..+..+.......+.+|.++|||||+|.+.++|.+||..||+.
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQ 79 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999999844221111111111346899999999999999999999999885
No 280
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.18 E-value=3.5e-07 Score=77.63 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=48.7
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|.+++..++.+.......+.+|.++|||||+|.+.++|.+||..||+.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 93 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV 93 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 344479999999999999998833111111111111338999999999999999999999999875
No 281
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.18 E-value=2.6e-07 Score=78.40 Aligned_cols=63 Identities=5% Similarity=-0.128 Sum_probs=47.3
Q ss_pred cccccccCCCccc------chhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESV------QSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~------~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+ ++++|.+++..++ +... ... ..+|.++|||||+|.+.++|.+||..||+.
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v-~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND-FYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEE-ECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEE-Eee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 3456999999999 6788888833111 1111 111 468999999999999999999999999874
No 282
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=4e-07 Score=77.11 Aligned_cols=64 Identities=14% Similarity=-0.007 Sum_probs=48.8
Q ss_pred ccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 88 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQ 88 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCC
Confidence 346999999999999999884311 1111111123567999999999999999999999999885
No 283
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.18 E-value=6.3e-07 Score=77.05 Aligned_cols=62 Identities=8% Similarity=-0.045 Sum_probs=48.1
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..++ +.......+..+|.++|||||+|.+.++|.+|| .||+.
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~ 89 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQ 89 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCC
Confidence 469999999999999999844222 222112234667999999999999999999999 88874
No 284
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=3e-07 Score=77.60 Aligned_cols=64 Identities=14% Similarity=-0.004 Sum_probs=48.1
Q ss_pred ccccccCCCcccchhhhcCCCCC-Cc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKS-PE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks-~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|.+++.. +. +....... +.+|.++|||||+|.+.++|.+||..||+..
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVL-DQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEE-CTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEE-CCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 34699999999999999887332 22 21111111 2389999999999999999999999998844
No 285
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.16 E-value=4.2e-07 Score=74.14 Aligned_cols=54 Identities=6% Similarity=-0.069 Sum_probs=43.3
Q ss_pred ccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++. .+.... ...++|||||+|.+.++|.+|+..||+.
T Consensus 10 L~VgNL~~~~te~~L~~lF~q~G~V~~~~--------l~~~kGfaFVey~~~~eA~~Ai~~Ln~~ 66 (89)
T 2wbr_A 10 LLLKNLTAQIDGPTLRTLCMQHGPLVSFH--------PYLNQGIALCKYTTREEANKAQMALNNC 66 (89)
T ss_dssp EEEECCCTTCCCHHHHHHHHHHSCEEEEE--------EETTTTEEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEeCCCccCCHHHHHHHHHhhCCEEEEE--------EcCCCcEEEEEECCHHHHHHHHHHhcCC
Confidence 59999999999999999943 111111 1227999999999999999999999974
No 286
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.16 E-value=5.9e-07 Score=76.72 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=49.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++ +.......+..+|.++|||||+|.+.++|..|+..||+.
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~ 91 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGF 91 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999999999999999844221 211111123567999999999999999999999999884
No 287
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=1.5e-06 Score=74.66 Aligned_cols=60 Identities=5% Similarity=-0.137 Sum_probs=45.6
Q ss_pred cccccccccCCCcc-cchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDES-VQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 227 ~~~~~~~v~nl~~~-~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+..++||+||+.. +++++|++++...+ +.... -.+++|||||+|.+.++|..|++.|++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~------i~~~kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYI------LMRMKSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEE------EETTTTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEE------EecCCCEEEEEECCHHHHHHHHHHhcc
Confidence 34555799999998 99999999955222 22110 124689999999999999999999886
No 288
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.15 E-value=3.9e-07 Score=75.66 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=48.6
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++.+... ..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 76 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 76 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3446999999999999999984422222211 467889999999999999999999999874
No 289
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.15 E-value=3.8e-07 Score=75.04 Aligned_cols=62 Identities=10% Similarity=-0.033 Sum_probs=47.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++..+.+....... +.+|+++|||||+|.+.++|.+||. ||+.
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~~i~~v~i~~-~~~g~~~g~afV~f~~~~~a~~A~~-~~g~ 72 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPLKPVAIRIVR-NAHGNKTGYIFVDFSNEEEVKQALK-CNRE 72 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTSCCSEEEEEE-CTTSCEEEEEEEECSSHHHHHHHHH-SCSE
T ss_pred cEEEEECCCCCCCHHHHHHHHhhCCceEEEEEE-CCCCCCceEEEEEECCHHHHHHHHH-hCCc
Confidence 346999999999999999984422222211111 3789999999999999999999999 8874
No 290
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.15 E-value=8.5e-07 Score=75.80 Aligned_cols=64 Identities=13% Similarity=-0.067 Sum_probs=47.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..++ +.......+..+|.++|||||+|.+.++|.+||..++..
T Consensus 26 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~ 90 (109)
T 2rs2_A 26 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 90 (109)
T ss_dssp CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCc
Confidence 3469999999999999998844221 211111223577999999999999999999999877533
No 291
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.15 E-value=1.3e-06 Score=73.79 Aligned_cols=60 Identities=7% Similarity=-0.100 Sum_probs=44.7
Q ss_pred ccccccccCCCc-ccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDE-SVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~-~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+...+||+||+. .+++++|++++...+ +... .. -..+|||||+|.+.++|..||+.||+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v-~i-----~~~kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH-LI-----LNKINEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEE-EE-----CSSSSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEE-EE-----EcCCCEEEEEECCHHHHHHHHHHHcCC
Confidence 445579999999 999999999955111 1110 00 123689999999999999999999873
No 292
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.14 E-value=9.9e-07 Score=74.15 Aligned_cols=61 Identities=10% Similarity=-0.146 Sum_probs=45.9
Q ss_pred cccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+..++||+||+..+++++|.+++. ...+..... -+.||||||+|.+.++|..|+..|++.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i------~~~kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVV------MPKKRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE------ETTTTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEE------EcCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 4556689999999999999999843 111111100 135899999999999999999999874
No 293
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=6.9e-07 Score=77.01 Aligned_cols=68 Identities=12% Similarity=0.092 Sum_probs=51.1
Q ss_pred cccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMVEE 296 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i~e 296 (567)
...+||+||+..+++++|.+++..+ .+.......+..+|+++|||||+|.+.++|.+||..+++.+..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g 85 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG 85 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCC
Confidence 3446999999999999999884311 1211112233578999999999999999999999999875543
No 294
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.14 E-value=8.5e-07 Score=77.46 Aligned_cols=64 Identities=14% Similarity=-0.026 Sum_probs=48.4
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++ +....... +.+|.++|||||+|.+.++|.+|+..||+.
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~-~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 99 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY-DRSGRSLGTADVHFERRADALKAMKQYKGV 99 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEEC-CSSSSCCSEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEE-CCCCCEeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999999999999998833111 11111112 238999999999999999999999999985
No 295
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.14 E-value=6.6e-07 Score=77.34 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=48.5
Q ss_pred ccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++..++ +.......+..+|.++|||||+|.+.++|.+||+.||+.
T Consensus 43 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~ 105 (118)
T 2khc_A 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGF 105 (118)
T ss_dssp EEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCC
Confidence 49999999999999999855222 221111223578999999999999999999999998874
No 296
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.14 E-value=7.7e-07 Score=75.83 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=46.9
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..+..+..... ..++.++|||||+|.+.++|.+||+.||+.
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 84 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDL--KNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 84 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE--CCSSSSSCCEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--EECCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 344699999999999999988441111110111 234568999999999999999999999885
No 297
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.14 E-value=4e-07 Score=75.42 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=47.2
Q ss_pred ccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++. .+.+.. +.+|.++|||||+|.+.++|.+|+..||+.
T Consensus 17 ~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~------~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (95)
T 2ywk_A 17 RTVFVGNLEARVREEILYELFLQAGPLTKVTICK------DREGKPKSFGFVCFKHPESVSYAIALLNGI 80 (95)
T ss_dssp GEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE------CTTSCEEEEEEEEESSTHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEE------CCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844 222332 334899999999999999999999999874
No 298
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.14 E-value=1.1e-06 Score=78.05 Aligned_cols=65 Identities=12% Similarity=0.002 Sum_probs=49.7
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||+.||+.
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 128 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 128 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCC
Confidence 44479999999999999998843 111211111233578999999999999999999999999874
No 299
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.13 E-value=5.5e-07 Score=77.50 Aligned_cols=64 Identities=6% Similarity=0.050 Sum_probs=48.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..++ +.......+..+|.++|||||+|.+.++|.+||..||+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 80 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQ 80 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844111 111111122468999999999999999999999999875
No 300
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.11 E-value=7.2e-07 Score=73.36 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=47.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|++++..+. +...... ..+|.++|||||+|.+.++|.+|+..||+..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~--~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIK--MENGKSKGCGVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEE--ESSSCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--ccCCCcceEEEEEECCHHHHHHHHHHhCCCE
Confidence 3469999999999999998833111 1110001 2478999999999999999999999998753
No 301
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=5.6e-07 Score=77.39 Aligned_cols=66 Identities=6% Similarity=-0.136 Sum_probs=48.7
Q ss_pred ccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|.+++..++ +..........+|.++|||||+|.+.++|..||..||+.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~ 90 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 90 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 344579999999999999998855111 100000011338999999999999999999999999884
No 302
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=4.6e-07 Score=76.36 Aligned_cols=63 Identities=11% Similarity=0.118 Sum_probs=47.6
Q ss_pred cccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+|+..||+.
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 73 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSB
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 36999999999999999883311 1111111122468999999999999999999999998874
No 303
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=2e-06 Score=72.52 Aligned_cols=60 Identities=8% Similarity=-0.122 Sum_probs=44.6
Q ss_pred cccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+..++||+||+..+++++|++++...+ +...... ..+|||||+|.+.++|..|+..|++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML------KGKNQAFLELATEEAAITMVNYYSA 73 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCCCEEEEEECCHHHHHHHHHHhcc
Confidence 3455679999999999999999955222 2111000 1289999999999999999998865
No 304
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.10 E-value=5.7e-07 Score=78.76 Aligned_cols=60 Identities=13% Similarity=-0.166 Sum_probs=45.2
Q ss_pred ccccccCCCcccchhhhcCCCC-CCcc---cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK-SPEN---LKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k-s~~~---~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ 289 (567)
..+||+||++.+++++|++++. ...+ ........+.+|+++|||||+|.+.++|.+||..
T Consensus 24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~ 87 (123)
T 2dha_A 24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK 87 (123)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh
Confidence 3469999999999999999944 2211 1111111235899999999999999999999986
No 305
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.10 E-value=5.2e-07 Score=73.97 Aligned_cols=61 Identities=21% Similarity=0.192 Sum_probs=46.6
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.+ |.+|+..||+.
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~ 65 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNT 65 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSS
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCC
Confidence 59999999999999999843 111111111123567999999999999999 99999998875
No 306
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=1.3e-06 Score=73.52 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=46.0
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++..+. +...... .+ .+.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~-~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII-FN-ERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEE-CC-TTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-ec-CCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34469999999999999998844111 1110000 01 22389999999999999999999998753
No 307
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.09 E-value=1.4e-06 Score=74.90 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=44.7
Q ss_pred ccccCCCcccchhhhcCCCC--C--CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK--S--PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k--s--~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||++.+++++|++++. . +..+. ...+.++|||||+|.+.++|.+||+.||+.
T Consensus 31 l~VgnLp~~~te~dL~~~F~~~G~~v~~v~------i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~ 90 (111)
T 2jvr_A 31 ITMKNLPEGCSWQDLKDLARENSLETTFSS------VNTRDFDGTGALEFPSEEILVEALERLNNI 90 (111)
T ss_dssp EEEECSSCCCCHHHHHHHHHHHTCCCSEEE------CSSCSSSCCEEEEESSHHHHHHHHHHTTTE
T ss_pred EEEECCCCCCCHHHHHHHHHHhCCeeEEEE------EEcCCCCCEEEEEECCHHHHHHHHHHcCCC
Confidence 69999999999999999844 2 22222 112458999999999999999999999885
No 308
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.09 E-value=4.6e-07 Score=75.54 Aligned_cols=62 Identities=16% Similarity=0.027 Sum_probs=46.9
Q ss_pred ccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++. .+.+..+.. +..+|.++|||||+|.+.++|.+||..||+.
T Consensus 6 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~ 73 (98)
T 2cpf_A 6 SGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN--KAGVLLSMGFGFVEYKKPEQAQKALKQLQGH 73 (98)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC--TTCCEEEEEEEEEEESSHHHHHHHHHHSTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCCCcCcccEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998833 222222110 0125589999999999999999999999875
No 309
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.09 E-value=7.4e-07 Score=72.52 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=46.4
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
...+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+||+.++
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 74 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKE 74 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCC
Confidence 33469999999999999999843 2111111111235679999999999999999999997633
No 310
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.1e-06 Score=74.69 Aligned_cols=53 Identities=15% Similarity=-0.013 Sum_probs=42.7
Q ss_pred cccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
...+||+||++.+++++|++++. ++.+.+ .+|||||+|.+.++|..|++.|++
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----------~kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------GKNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----------CCCEEEEEECCHHHHHHHHHHhcc
Confidence 34469999999999999999833 222322 279999999999999999998874
No 311
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.08 E-value=1.5e-06 Score=75.59 Aligned_cols=61 Identities=10% Similarity=-0.104 Sum_probs=44.7
Q ss_pred cccccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+..++||+||++.+++++|++++. ...+...... ..+|||||+|.+.++|.+|++.|++.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~------~~kG~AFVeF~~~e~A~~Ai~~l~~~ 90 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML------KGKNQAFIEMNTEEAANTMVNYYTSV 90 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE------GGGTEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhccC
Confidence 3455679999999999999999833 1111111000 12799999999999999999998863
No 312
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.07 E-value=6.7e-07 Score=73.02 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=47.1
Q ss_pred cccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
.+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|.+|+ .||+..
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~ 71 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESL 71 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCE
Confidence 36999999999999999884311 1111111123568999999999999999999999 888753
No 313
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.35 E-value=4.7e-07 Score=78.13 Aligned_cols=65 Identities=12% Similarity=-0.031 Sum_probs=49.7
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccc--------cCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLK--------DNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k--------~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|++++..+. +.. .....+..+|.++|||||+|.+.++|.+||..||+..
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 8 NTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 3469999999999999999955221 111 1111235779999999999999999999999999853
No 314
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.07 E-value=7.5e-07 Score=78.49 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=46.1
Q ss_pred ccccccccCCCcccchhhhcC----C-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNE----P-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e----~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+...+||+||+..+++++|++ + ++...+... . ...+|+++|||||+|.+.++|..|+..||+.
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v-~--i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~ 95 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDI-V--VDLSDDNSGKAYIVFATQESAQAFVEAFQGY 95 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE-E--ECCCCSSCCCEEEEESSHHHHHHHHHHSTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE-E--eccCCCcCCEEEEEECCHHHHHHHHHHHCCC
Confidence 344579999999999998763 3 221111111 0 1346889999999999999999999999985
No 315
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.07 E-value=3.9e-07 Score=88.74 Aligned_cols=62 Identities=13% Similarity=0.075 Sum_probs=49.3
Q ss_pred ccccCCCcccchhhhcCCCCCC---cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP---ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~---~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++..+ .+.......+..+|+++|||||+|.+.++|.+||+.||+.
T Consensus 71 lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~ 135 (229)
T 3q2s_C 71 LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKR 135 (229)
T ss_dssp EEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTS
T ss_pred EEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC
Confidence 5999999999999999984422 2222222234679999999999999999999999998874
No 316
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.07 E-value=8.4e-07 Score=72.17 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=45.5
Q ss_pred ccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCC-CCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHD-PTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~-~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||+..+++++|.+++... .+.......+..++. ++|||||+|.+.++|.+|+..||+..
T Consensus 7 l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 71 (88)
T 4a8x_A 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQ 71 (88)
T ss_dssp EEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCe
Confidence 5999999999999999883311 111111111133334 89999999999999999999998853
No 317
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.06 E-value=9.1e-07 Score=80.55 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=49.9
Q ss_pred ccccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|.+++..+ .+.......+..++.++|||||+|.+.++|.+||..||+.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 104 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 104 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 34457999999999999999884411 1111111123567999999999999999999999998874
No 318
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=1.8e-06 Score=73.73 Aligned_cols=64 Identities=17% Similarity=0.090 Sum_probs=45.8
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++.+...... ...+.++|||||+|.+.++|.+|+..||+.
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~-~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~ 92 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII-FNERGSKGFGFVTFENSADADRAREKLHGT 92 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEEC-CBTTBCTTEEEEECCCSHHHHHHHHHHTTC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEE-ECCCCCceEEEEEECCHHHHHHHHHHcCCC
Confidence 3446999999999999999884411111100000 112458999999999999999999999875
No 319
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=1.7e-06 Score=74.47 Aligned_cols=61 Identities=11% Similarity=-0.058 Sum_probs=46.4
Q ss_pred cccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+||+||+..+++++|++++..+ .+.......+..+|.++|||||+|.+.++|.+||.. ++
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~ 90 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RP 90 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CC
Confidence 36999999999999999984411 121111223367899999999999999999999987 44
No 320
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.02 E-value=1.8e-06 Score=74.25 Aligned_cols=63 Identities=10% Similarity=0.019 Sum_probs=46.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++..++.+..... ..++.++|||||+|.+.++|..|+..||+.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 70 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRV--GNTPETRGTAYVVYEDIFDAKNAVDHLSGF 70 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEE--ECSTTTTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEE--eeCCCCCcEEEEEECCHHHHHHHHHHcCCC
Confidence 345799999999999999988331111110000 124667999999999999999999999885
No 321
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.02 E-value=1.4e-06 Score=68.66 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=43.7
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ 289 (567)
+||+||+..+++++|.+++. ...+.......+..+|.++|||||+|.+.++|.+|+..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh
Confidence 49999999999999998833 11111111122356799999999999999999999874
No 322
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.02 E-value=1.2e-06 Score=74.61 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=46.7
Q ss_pred cccccCCCcccchhhhcCCCC---C-CcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTK---S-PENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~k---s-~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
.+||+||+..+++++|.+++. . +..+.. ...+..+|.++|||||+|.+.++|..|+..|+
T Consensus 10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i-~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIV-YASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHSTTEEEEEC-CSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEE-EccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 369999999999999998833 1 221211 11346788999999999999999999999985
No 323
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.01 E-value=6.8e-07 Score=79.62 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=47.7
Q ss_pred cccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++. ++.+.. +..+|.++|||||+|.+.++|.+||..||+.
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~-----~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 107 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVC-----DRETRQSRGYGFVKFQSGSSAQQAIAGLNGF 107 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEE-----ETTTTEEEEEEEEEESSHHHHHHHHHHTTTE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-----cCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 369999999999999998844 222222 2567899999999999999999999999874
No 324
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.01 E-value=3.2e-06 Score=71.70 Aligned_cols=60 Identities=13% Similarity=-0.104 Sum_probs=45.0
Q ss_pred cccccccccCCCcccchhhhcCCC-CCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDESVQSVEKNEPT-KSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 227 ~~~~~~~v~nl~~~~~e~~l~e~~-ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
.+..++||+||+..+++++|++++ +...+...... ..+|||||+|.+.++|.+|+..|++
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~~ 73 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM------PFKRQALVEFENIDSAKECVTFAAD 73 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCCCEEEEEECCHHHHHHHHHHhcc
Confidence 445668999999999999999984 42222211100 1389999999999999999999876
No 325
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=1.7e-06 Score=71.98 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=46.3
Q ss_pred cccccccCCCcccchhhhcCCCC-CCcc-cccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK-SPEN-LKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k-s~~~-~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|++++. ...+ .. ..++.++|||||+|.+.++|.+|+..||+.
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~------~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 79 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVPLR------LTWQGPRRRAFLHYPDSAAAQQAVSCLQGL 79 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCCSE------EEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEEEE------EEcCCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 34469999999999999998844 1111 11 224688999999999999999999999875
No 326
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.99 E-value=1.1e-06 Score=74.18 Aligned_cols=63 Identities=16% Similarity=0.032 Sum_probs=46.9
Q ss_pred ccccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++..+ .+.......+..+|.++|||||+|.+.++|.+||.. ++.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~ 80 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPH 80 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCC
Confidence 346999999999999999883311 111111112357899999999999999999999998 653
No 327
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.98 E-value=9e-07 Score=79.34 Aligned_cols=67 Identities=10% Similarity=-0.065 Sum_probs=49.3
Q ss_pred ccccccccCCCcccchhhhcCCCCCCc-cccc-----CCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPE-NLKD-----NETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~-----~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
....+||+||+..+++++|.+++..++ +... .+.....+|.++|||||+|.+.++|..||..||+..
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~ 116 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYV 116 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCE
Confidence 344579999999999999998844111 1110 000113579999999999999999999999999853
No 328
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.96 E-value=9.5e-07 Score=73.40 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=46.2
Q ss_pred cccccccCCCcccchhhhc----CCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKN----EPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~----e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|. +++...+.+..... ..+|.++|||||+|.+.++|..|+..||+.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV--SRSLKMRGQAFVIFKEVSSATNALRSMQGF 74 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEEC--CHHHHHTTCEEEEESSHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEE--EcCCCcCcEEEEEeCCHHHHHHHHHHhCCC
Confidence 3446999999999999998 66331111110001 135788999999999999999999999984
No 329
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.96 E-value=2.2e-06 Score=79.93 Aligned_cols=62 Identities=15% Similarity=-0.020 Sum_probs=47.3
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..++ +....... +.+|.++|||||+|.+.++|.+||..||+.
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~-d~~g~~kG~afV~F~~~~~A~~Ai~~lng~ 152 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDY-DRSGRSLGTADVHFERRADALKAMKQYKGV 152 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECC-CTTSSCSCCEEEEESCHHHHHHHHHHSTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE-CCCCCEeeEEEEEeCCHHHHHHHHHHhCCC
Confidence 359999999999999998844111 11111111 338999999999999999999999999885
No 330
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=2.5e-06 Score=71.71 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=45.3
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEK 289 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ 289 (567)
...+||+||+..+++++|.+++..+. +.......+..+|.++|||||+|.+.++|.+||..
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 34469999999999999998844111 11111112356799999999999999999999985
No 331
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.8e-06 Score=71.86 Aligned_cols=55 Identities=20% Similarity=0.076 Sum_probs=43.2
Q ss_pred cccccCCCcccchhhhc----CCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKN----EPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~----e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|+ +++. ++.+.. +..+ +|||||+|.+.++|.+||..||+.
T Consensus 11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~------~~~~--rg~afV~f~~~~~A~~Ai~~l~g~ 75 (96)
T 2dgx_A 11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSP------HTDY--QLKAVVQMENLQDAIGAVNSLHRY 75 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECS------CCST--TCCEEEEESSHHHHHHHHHHHTTE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEe------CCCC--CeEEEEEECCHHHHHHHHHHhCCC
Confidence 36999999999999998 6633 222332 2222 899999999999999999999985
No 332
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=97.95 E-value=1.2e-06 Score=76.41 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=46.7
Q ss_pred cccccCCCcccchhhhcCCCCCC-cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP-ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~-~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..+ .+.......+..+|.++|||||+|.+.++|..|| .||+.
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~ 100 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDET 100 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCC
Confidence 36999999999999999883311 1111111122578999999999999999999999 78774
No 333
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.94 E-value=2.1e-06 Score=72.28 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=46.2
Q ss_pred cccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+..+++++|.+++. ++.+..+ .+.++|||||+|.+.++|.+||..||+..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-------HTSNDPYCFVEFYEHRDAAAALAAMNGRK 79 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC-------CCSSCCEEEEEESSHHHHHHHHHHHTTEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec-------CCCCCCEEEEEECCHHHHHHHHHHhCCCC
Confidence 34469999999999999998843 2333331 23368999999999999999999998753
No 334
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=2.3e-06 Score=73.71 Aligned_cols=61 Identities=10% Similarity=-0.080 Sum_probs=44.9
Q ss_pred cccccccc--cCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 227 KETQDAGA--GKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 227 ~~~~~~~v--~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.++..+|| +||+..+++++|++++. ...+.... .. ..+|||||+|.+.++|.+|++.||+.
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~----i~--~~rgfaFV~f~~~~~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL----MP--PNKPYSFARYRTTEESKRAYVTLNGK 86 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEE----CC--TTCSCEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEE----Ee--CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34555799 77999999999998843 11111110 01 13799999999999999999999985
No 335
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.91 E-value=3.7e-06 Score=68.65 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=44.6
Q ss_pred ccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|++++....+.... . .+++|||||+|.+.++|.+|+..||+.
T Consensus 8 l~V~nLp~~~t~~~l~~~F~~~~v~~~~-i-----~~~~g~afV~f~~~~~a~~Ai~~l~g~ 63 (88)
T 1wg1_A 8 ILVKNLPQDSNCQEVHDLLKDYDLKYCY-V-----DRNKRTAFVTLLNGEQAQNAIQMFHQY 63 (88)
T ss_dssp EEEESCCSSCCHHHHHHHTCSSCCCCEE-E-----EGGGTEEEECCSCHHHHHHHHHHHTTE
T ss_pred EEEeCCCCCCCHHHHHHHHhhCCeEEEE-E-----eCCCcEEEEEECCHHHHHHHHHHhCCC
Confidence 5999999999999999985422222211 1 167999999999999999999999885
No 336
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.87 E-value=3.3e-06 Score=72.82 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=42.0
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|++++..+..+.......+ |||||+|.+.++|.+||+.||+.
T Consensus 18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~ 74 (115)
T 3beg_B 18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNT 74 (115)
T ss_dssp CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCC
Confidence 3699999999999999998441111110001001 99999999999999999999885
No 337
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.85 E-value=5.9e-06 Score=68.63 Aligned_cols=61 Identities=13% Similarity=0.000 Sum_probs=44.6
Q ss_pred ccccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
....+||+||+..+++++|.+++..+. +... . ... .+|||||+|.+.++|.+|+..||+..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v-~---~~~--~~g~afV~f~~~~~A~~A~~~l~g~~ 77 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTI-D---HVK--GDSFAYIQYESLDAAQAACAKMRGFP 77 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEE-E---ECS--SSCCEEEEESSHHHHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE-E---EeC--CCCEEEEEECCHHHHHHHHHHHCCCE
Confidence 334569999999999999998833111 1111 0 111 27899999999999999999998753
No 338
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=97.84 E-value=5.2e-06 Score=69.48 Aligned_cols=59 Identities=7% Similarity=-0.040 Sum_probs=44.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..++.+.. -....++|||||+|.+.++|..|+..||+.
T Consensus 28 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~-----~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~ 86 (101)
T 2la4_A 28 TTAYIGNIPHFATEADLIPLFQNFGFILD-----FKHYPEKGCCFIKYDTHEQAAVCIVALANF 86 (101)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHTTSCCSE-----EEEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CEEEEcCCCcccCHHHHHHHHHhCCCEEE-----EEEecCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34699999999999999988332111111 011257899999999999999999999875
No 339
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=3.8e-06 Score=69.18 Aligned_cols=57 Identities=14% Similarity=0.082 Sum_probs=43.3
Q ss_pred ccccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
..+||+||+..+++++|++++. ...+.... .-.++|||||+|.+.++|.+|+..||+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~------~~~~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 9 NKLYIGNLSPAVTADDLRQLFGDRKLPLAGQ------VLLKSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHTTCCCSSC------EEEETTEEEECCSCHHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCceEEE------EEcCCCEEEEEECCHHHHHHHHHHccC
Confidence 3469999999999999998843 11111100 013589999999999999999999998
No 340
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.83 E-value=7.4e-06 Score=69.78 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=44.5
Q ss_pred ccccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
....+||+||+..+++++|.+++..++.+..... .+|||||+|.+.++|.+|+..||+..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i-------~kg~afV~f~~~~~A~~Ai~~l~g~~ 89 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKI-------LNGFAFVEFEEAESAAKAIEEVHGKS 89 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEE-------ETTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEE-------ECCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3344699999999999999988442221111111 17999999999999999999998853
No 341
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=7.5e-06 Score=70.08 Aligned_cols=58 Identities=10% Similarity=-0.100 Sum_probs=44.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++..++ +... .. -.++|||||+|.+.++|..||..||+.
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v-~i-----~~~~g~afV~f~~~~~A~~Ai~~l~g~ 69 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRV-LL-----PEGGITAIVEFLEPLEARKAFRHLAYS 69 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEE-EC-----CSSSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-EE-----eCCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 3469999999999999998843222 2111 01 136899999999999999999999985
No 342
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.82 E-value=3.5e-06 Score=71.65 Aligned_cols=56 Identities=13% Similarity=-0.024 Sum_probs=41.8
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|++++..+. +....... + |||||+|.+.++|.+||+.||+.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~-~------g~afV~f~~~~~a~~Ai~~l~g~ 73 (108)
T 1x4c_A 17 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR-D------GTGVVEFVRKEDMTYAVRKLDNT 73 (108)
T ss_dssp EEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET-T------TEEEEEESSHHHHHHHHHHSSSE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec-C------CEEEEEECCHHHHHHHHHHHCcC
Confidence 369999999999999999844111 11100000 1 89999999999999999999875
No 343
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=97.80 E-value=4.8e-06 Score=69.70 Aligned_cols=52 Identities=17% Similarity=0.159 Sum_probs=42.8
Q ss_pred ccccCCCcccchhhhcCCCC---CC---cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK---SP---ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k---s~---~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||+..+++++|.+++. .+ .+.. + ++|||||+|.+.++|.+|+..||+.
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~------~----~~g~afV~f~~~~~a~~A~~~l~g~ 60 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIAR------N----PPGFAFVEFEDPRDAEDAVRGLDGK 60 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEES------S----SSSEEEEECSSHHHHHHHHHHHHHS
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee------C----CCCEEEEEECCHHHHHHHHHHHCCC
Confidence 59999999999999998833 22 2222 1 7899999999999999999999985
No 344
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.79 E-value=9.1e-06 Score=67.75 Aligned_cols=60 Identities=17% Similarity=0.108 Sum_probs=44.9
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+++++|.+++..+..+.... ....+|||||+|.+.++|.+|+..||+..
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~-----~~~~kg~afV~f~~~~~a~~a~~~l~g~~ 75 (99)
T 2cpj_A 16 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVF-----IHKDKGFGFIRLETRTLAEIAKVELDNMP 75 (99)
T ss_dssp TEEEEESCCTTCCHHHHHHHTSTTCCCSEEE-----EETTTTEEEEECSSSHHHHHHHHHHTTCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhcCCeEEEE-----EecCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 3469999999999999999855222111110 11348999999999999999999998854
No 345
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=7.5e-06 Score=67.96 Aligned_cols=58 Identities=10% Similarity=0.022 Sum_probs=44.0
Q ss_pred cccccccCCCc-ccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDE-SVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 229 ~~~~~v~nl~~-~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
...+||+||+. .+++++|.+++...+ +... . -++|||||+|.+.++|..|+..||+..
T Consensus 10 ~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v-~-------i~~g~afV~f~~~~~A~~A~~~l~g~~ 69 (96)
T 2kvi_A 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQI-N-------IKNAFGFIQFDNPQSVRDAIECESQEM 69 (96)
T ss_dssp CEEEEEESSTTSCCCHHHHHHHHTTTCCCCEE-E-------EETTEEEEEESCHHHHHHHHHHHTCSS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEE-E-------EeCCEEEEEECCHHHHHHHHHHcCCCe
Confidence 34469999998 999999999844222 1111 0 037999999999999999999998753
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=97.79 E-value=7.2e-06 Score=77.52 Aligned_cols=100 Identities=8% Similarity=-0.023 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHh--CCceeCCeEEEEEEchhhH--HHHHhhhhhhhhccccccccccccccCCCcccchhhhcCCCC---
Q 008385 179 SAEGVLRALRLL--NKFNIDGQELMLKVDQATR--EYLERYVDKKTENTKKLKETQDAGAGKEDESVQSVEKNEPTK--- 251 (567)
Q Consensus 179 ~~~~A~~Ai~~L--ng~~i~gr~l~V~~a~~~~--~~~~~~~~~k~~~~~~~~~~~~~~v~nl~~~~~e~~l~e~~k--- 251 (567)
+...+..|+... ....+.+..+.|....... .....+. .......+||+||+..+++++|.+++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~--------~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYK--------NDVKNRSVYIKGFPTDATLDDIKEWLEDKG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHH--------HHHHHTEEEEECCCTTCCHHHHHHHHTTSC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhh--------hccccCEEEecCCCCcCCHHHHHHHHhcCC
Confidence 567778888766 5566666555555432100 0000000 011123469999999999999998843
Q ss_pred ---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHH
Q 008385 252 ---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTC 292 (567)
Q Consensus 252 ---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~ 292 (567)
++.+.. ..+|.++|||||+|.+.++|.+||..++.
T Consensus 135 ~v~~v~i~~------~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 135 QVLNIQMRR------TLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp CEEEEEEEE------CTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred CEEEEEEEE------CCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 222333 34589999999999999999999987654
No 347
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.78 E-value=7.8e-06 Score=68.14 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=43.8
Q ss_pred cccccccCCCc-ccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDE-SVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~-~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+. .+++++|.+++...+.+..... ++|||||+|.+.++|.+|+..||+.
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~Ai~~l~g~ 80 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------KNAFGFIQFDNPQSVRDAIEXESQE 80 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------CSSEEEEEESSHHHHHHHHHHHTTS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34469999998 9999999988442221111100 3899999999999999999999885
No 348
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.76 E-value=8.5e-07 Score=74.53 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=42.8
Q ss_pred cccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALE 288 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle 288 (567)
.+||+||+..+++++|.+++. ++.+.. +.+|.++|||||+|.+.++|.+|+.
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~------~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIIT------DRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEE------CTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEE------CCCCCccceEEEEECCHHHHHHHHh
Confidence 369999999999999998844 222332 2389999999999999999999998
No 349
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.74 E-value=1.3e-05 Score=66.85 Aligned_cols=58 Identities=10% Similarity=-0.019 Sum_probs=45.2
Q ss_pred ccccccccCCCcccchhhhcCCCCCC---cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDESVQSVEKNEPTKSP---ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~~~e~~l~e~~ks~---~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
....+||+||+..+++++|++++..+ .+... ..++|||||+|.+.++|.+||..||+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~--------~~~~g~afV~f~~~~~A~~A~~~l~g~ 74 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV--------KKIRDYAFVHFSNREDAVEAMKALNGK 74 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEE--------EECSSEEEEEESSHHHHHHHHHHHSSE
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEE--------EEeCCeEEEEeCCHHHHHHHHHHhCCC
Confidence 34457999999999999999884322 22221 234889999999999999999999885
No 350
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.72 E-value=8.6e-06 Score=66.62 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=42.8
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|.+++..+..+..... .+|||||+|.+.++|.+|+..||+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~-------~~g~afV~f~~~~~A~~A~~~l~g~ 65 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDI-------IKNYGFVHIEDKTAAEDAIRNLHHY 65 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEE-------ETTEEEEEESSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEE-------ECCEEEEEECCHHHHHHHHHHhcCC
Confidence 34699999999999999988332211111001 1789999999999999999999984
No 351
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.70 E-value=1.8e-05 Score=64.90 Aligned_cols=52 Identities=19% Similarity=0.074 Sum_probs=36.5
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQE 285 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~k 285 (567)
..+||+||+..+++++|++++..++.+...... ..++|||||+|.+.++|.+
T Consensus 12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~----~~srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIP----KPFRAFAFVTFADDKVAQS 63 (89)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECC----SSCCSEEEEEESCHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEe----eCCCCEEEEEECCHHHHHH
Confidence 346999999999999999984422211111110 1289999999999999873
No 352
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=1.5e-05 Score=65.48 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=42.6
Q ss_pred ccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++...+.+.... -.++||||+|.+.++|.+|+..||+.
T Consensus 11 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~-------~~~~~afV~f~~~~~a~~A~~~l~g~ 67 (92)
T 2dgt_A 11 TKLHVGNISPTCTNQELRAKFEEYGPVIECD-------IVKDYAFVHMERAEDAVEAIRGLDNT 67 (92)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCCEEE-------ECSSEEEEEESCHHHHHHHHHHHTTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE-------EECCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998833111111000 12569999999999999999999875
No 353
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=9.7e-06 Score=66.95 Aligned_cols=57 Identities=16% Similarity=0.014 Sum_probs=43.0
Q ss_pred cccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|++++..++ +... ..+..+|. ||||+|.+.++|.+||. ||+.
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~ 67 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQH 67 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCe
Confidence 469999999999999999854222 2211 12244554 99999999999999999 8874
No 354
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=97.66 E-value=5e-06 Score=67.38 Aligned_cols=62 Identities=6% Similarity=-0.000 Sum_probs=42.7
Q ss_pred cccccCCCcccchhhhcCCCCCC----cccc-cC-CCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSP----ENLK-DN-ETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~----~~~k-~~-~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+||+..+++++|.+++..+ ++.. .+ ....-.....+|||||+|.+.++|.+|+ .||+.
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC
Confidence 36999999999999999884311 2000 00 0000122344899999999999999999 88875
No 355
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.65 E-value=1.1e-05 Score=68.81 Aligned_cols=54 Identities=7% Similarity=0.021 Sum_probs=43.4
Q ss_pred ccccccCCCcc-cchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDES-VQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~-~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+.. +++++|.+++. .+..+.. ++|||||+|.+.++|..||..||+.
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----------~~g~afV~f~~~~~A~~A~~~l~g~ 85 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----------HKGYAFVQYSNERHARAAVLGENGR 85 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----------ETTEEEEECSSSHHHHHHHHHHTTC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----------eCCEEEEEECCHHHHHHHHHHcCCC
Confidence 34699999999 99999998844 2222211 5899999999999999999999885
No 356
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.64 E-value=1.2e-05 Score=68.27 Aligned_cols=53 Identities=6% Similarity=0.016 Sum_probs=43.1
Q ss_pred ccccccCCCcccchhhhcCCCC------CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK------SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k------s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|..++. .+.+.. .+|||||+|.+.++|..|+..||+.
T Consensus 26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~-----------~~g~afV~f~~~~~a~~A~~~l~g~ 84 (109)
T 1x4g_A 26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP-----------EKGYSFVRFSTHESAAHAIVSVNGT 84 (109)
T ss_dssp CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEET-----------TTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------CCCEEEEEECCHHHHHHHHHHcCCC
Confidence 3469999999999999998843 222222 1899999999999999999999885
No 357
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=97.63 E-value=1.6e-05 Score=66.89 Aligned_cols=55 Identities=11% Similarity=0.128 Sum_probs=43.5
Q ss_pred cccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+||+..+++++|.+++. .+..+. -.+|||||+|.+.++|.+||..||+.
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~----------~~~~~afV~f~~~~~a~~A~~~l~g~ 68 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVK----------KLKDYAFIHFDERDGAVKAMEEMNGK 68 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEE----------ECSSCEEEEESSHHHHHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE----------EECCEEEEEeCCHHHHHHHHHHHCCC
Confidence 34469999999999999998844 222111 12679999999999999999999885
No 358
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=1.6e-05 Score=64.07 Aligned_cols=58 Identities=10% Similarity=-0.010 Sum_probs=42.2
Q ss_pred cccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHH-HH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKL-TC 292 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~l-n~ 292 (567)
...+||+||+..+++++|.+++...+ +.... . -.++|||||+|.+.++|..|+..| ++
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~-~-----~~~kg~afV~f~~~~~A~~a~~~l~~~ 71 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTIT-V-----VQRQQCAFIQFATRQAAEVAAEKSFNK 71 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEE-E-----EGGGTEEEEEESSHHHHHHHHHTTTTT
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEE-E-----ECCCCEEEEEECCHHHHHHHHHHhcCC
Confidence 34469999999999999998833111 11100 0 014799999999999999999988 65
No 359
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=97.59 E-value=2.2e-05 Score=69.13 Aligned_cols=58 Identities=16% Similarity=-0.069 Sum_probs=43.5
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCce-EEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNF-GVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGf-gFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||++.+++++|.++ ++...+.+.... .+.+|| |||+|.+.++|..|+..|||..
T Consensus 31 I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~-----~~~~gfqAFVef~~~~~A~~Ai~~LnG~~ 90 (130)
T 3zzy_A 31 IIVENLFYPVTLDVLHQIFSKFGTVLKIITF-----TKNNQFQALLQYADPVSAQHAKLSLDGQN 90 (130)
T ss_dssp EEEESCCSCCCHHHHHHHHTTSSCEEEEEEE-----EETTEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEECCCCCCCCHHHHHHHHhCcCCEEEEEEE-----cCCCCcEEEEEECCHHHHHHHHHHcCCCe
Confidence 589999999999999999 442222211100 123688 9999999999999999999853
No 360
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.56 E-value=7.7e-06 Score=71.36 Aligned_cols=57 Identities=11% Similarity=-0.030 Sum_probs=40.4
Q ss_pred ccccCC----CcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCC----H-HH---HHHHHH
Q 008385 232 AGAGKE----DESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEED----R-KA---DQEALE 288 (567)
Q Consensus 232 ~~v~nl----~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~----~-e~---a~kAle 288 (567)
+||+|| ++.+++..|++++.+.+ +.......+..||.++|||||+|.+ . ++ |.+|+.
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 499999 99999999999944222 2222222458999999999999996 3 32 666666
No 361
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.56 E-value=2.3e-05 Score=64.00 Aligned_cols=54 Identities=13% Similarity=0.069 Sum_probs=42.4
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|..++. .+..+.. .+|||||+|.+.++|.+|+..||+.
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~----------~~~~afV~f~~~~~a~~A~~~l~g~ 66 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDV----------VKDYAFVHMEKEADAKAAIAQLNGK 66 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEE----------CSSCEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEE----------ECCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844 2221111 1569999999999999999999985
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.55 E-value=3.3e-05 Score=62.77 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=37.1
Q ss_pred cccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHH
Q 008385 231 DAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEA 286 (567)
Q Consensus 231 ~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kA 286 (567)
.+||+||+..+++++|++++..++.+...... ..++|||||+|.+.++|.+|
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~----~~~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIP----KPFRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECC----SSCCSCCEEECSCHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe----cCCCCEEEEEECCHHHHHHH
Confidence 36999999999999999985522211111110 12799999999999999754
No 363
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.54 E-value=1.7e-05 Score=72.57 Aligned_cols=59 Identities=12% Similarity=-0.171 Sum_probs=43.7
Q ss_pred ccccCCCcccchhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
+||+||++.+++++|.+++. ...+.+... .+..++|||||+|.+.++|..|++.||+..
T Consensus 49 l~VgNL~~~vted~L~~~Fs~fG~V~~V~i----~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~ 108 (164)
T 1sjr_A 49 IIVENLFYPVTLDVLHQIFSKFGTVLKIIT----FTKNNQFQALLQYADPVSAQHAKLSLDGQN 108 (164)
T ss_dssp EEECSCCSCCCHHHHHHHHHHHSCEEEEEE----EESSSCEEEEEEESCHHHHHHHHHHSTTBC
T ss_pred EEEeCcCCCCCHHHHHHHHHhcCCEEEEEE----EeCCCCCEEEEEECCHHHHHHHHHHhCCCE
Confidence 69999999999999998843 111111100 112357999999999999999999999853
No 364
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=3.3e-05 Score=63.68 Aligned_cols=52 Identities=4% Similarity=-0.072 Sum_probs=41.0
Q ss_pred ccccCCCcccchhhhc----CCCCCC--cccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKN----EPTKSP--ENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~----e~~ks~--~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||++.++.+.|+ +++..+ .+... +| |||||.|.+.++|..|++.|++.
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~ 69 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENE 69 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCC
Confidence 6999999999998855 453333 23332 34 99999999999999999999984
No 365
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.49 E-value=0.00024 Score=59.29 Aligned_cols=75 Identities=12% Similarity=0.026 Sum_probs=63.3
Q ss_pred CCceEEEcCCCCCC-cH----HHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 127 PQTKVYVGKIAPTA-DS----DFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~-te----~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
..++|+|.||+..+ .. ..++.+|..|+.+.++..... -.=..|.|.+.++|.+|-..||+..|+|..|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 36789999998754 22 477999999999999877654 23578999999999999999999999999999
Q ss_pred EEEchh
Q 008385 202 LKVDQA 207 (567)
Q Consensus 202 V~~a~~ 207 (567)
|-+++.
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 988874
No 366
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.49 E-value=4.6e-05 Score=63.16 Aligned_cols=56 Identities=14% Similarity=0.054 Sum_probs=42.4
Q ss_pred ccccccCCCcccchhhhcCCCCCCc-ccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTKSPE-NLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~ks~~-~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+|+ .+++++|++++.... +... ..+.++|||||+|.+.++|.+||..||+.
T Consensus 16 ~~l~V~n~--~~t~~~l~~~F~~~G~i~~v------~i~~~~g~afV~f~~~~~a~~Ai~~l~g~ 72 (97)
T 1x5p_A 16 NTLYVYGE--DMTPTLLRGAFSPFGNIIDL------SMDPPRNCAFVTYEKMESADQAVAELNGT 72 (97)
T ss_dssp SEEEEECS--SCCHHHHHHHHTTTSCEEEE------EEETTTTEEEEEESSHHHHHHHHHHTTTE
T ss_pred CEEEEcCC--CCCHHHHHHHHhhCCCEEEE------EecCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 34699995 899999998844222 2111 11468999999999999999999999885
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.46 E-value=4.2e-05 Score=78.55 Aligned_cols=62 Identities=10% Similarity=-0.095 Sum_probs=46.1
Q ss_pred ccccccccccC--CCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 226 LKETQDAGAGK--EDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 226 ~~~~~~~~v~n--l~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+++.+||+| |+..+++++|+++ ++...+...... .+||||||+|.+.++|.+|++.|||.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~------~~kgfaFV~f~~~~~A~~Ai~~lnG~ 79 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMP------PNKPYSFARYRTTEESKRAYVTLNGK 79 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECC------TTCSEEEEEESSHHHHHHHHHHTTTC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 44566679999 5788999999988 442222221111 25899999999999999999999985
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.41 E-value=5e-05 Score=66.38 Aligned_cols=56 Identities=11% Similarity=-0.105 Sum_probs=42.0
Q ss_pred ccccCCCcccchhhhcCC-CCCCcccccCCCCCCCCCCCCce-EEEEeCCHHHHHHHHHHHHHH
Q 008385 232 AGAGKEDESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNF-GVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 232 ~~v~nl~~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGf-gFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+||++.+++++|.++ ++...+...... . + .|| |||+|.+.++|..|++.|||.
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~--~---~-~Gf~aFVef~~~~~A~~A~~~LnG~ 85 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIF--K---R-NGIQAMVEFESVLCAQKAKAALNGA 85 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEE--E---S-SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE--e---C-CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 589999999999999999 442222211111 1 1 286 999999999999999999985
No 369
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.39 E-value=6.4e-05 Score=63.67 Aligned_cols=63 Identities=14% Similarity=-0.072 Sum_probs=42.5
Q ss_pred cccccccccCCCc-----ccchhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 227 KETQDAGAGKEDE-----SVQSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 227 ~~~~~~~v~nl~~-----~~~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
.++.++++.|+.. ..++++|+++ ++ ++.+..+. ..++.++|||||+|.+.++|.+|+..||+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~----~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~ 79 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIP----GAPDDEAVRIFLEFERVESAIKAVVDLNGR 79 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECS----SCCTTTSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCC----CCCCCCcEEEEEEECCHHHHHHHHHHHCCC
Confidence 3455667888752 1245666655 33 33333311 224789999999999999999999999985
No 370
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.37 E-value=9.2e-05 Score=64.31 Aligned_cols=58 Identities=17% Similarity=0.102 Sum_probs=42.4
Q ss_pred cccccccCCCcccchhhhcCCCCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+||+|+ .+++++|++++..++.+... ..+.++|||||+|.+.++|.+||..||+.
T Consensus 39 ~~~lfVgnl--~~te~~L~~~F~~~G~I~~v-----~i~~~kg~aFV~f~~~~~A~~Ai~~lng~ 96 (121)
T 2bz2_A 39 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDL-----SMDPPRNCAFVTYEKMESADQAVAELNGT 96 (121)
T ss_dssp CCEEEEECS--SCCHHHHHHHHSTTCCCSCE-----EEETTTTEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCEEEEcCC--CCCHHHHHHHHHccCCEEEE-----EEeCCCCEEEEEECCHHHHHHHHHHhCCC
Confidence 344699996 69999999884422211110 11368999999999999999999999885
No 371
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=97.17 E-value=9.9e-05 Score=71.88 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=42.9
Q ss_pred ccccccCCCccc---------chhhhcCC-CC--CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESV---------QSVEKNEP-TK--SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCMV 294 (567)
Q Consensus 230 ~~~~v~nl~~~~---------~e~~l~e~-~k--s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~i 294 (567)
..+||+||+..+ ++++|..+ ++ .+..++. -.++|||||+|.+.++|..|++.|++..
T Consensus 135 rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v--------~~~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 135 KTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRY--------VESKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp CEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEE--------EGGGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred ceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEE--------ECCCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 346999999998 78998887 33 1111111 1258999999999999999999998843
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.13 E-value=4.7e-05 Score=64.34 Aligned_cols=30 Identities=10% Similarity=-0.037 Sum_probs=27.0
Q ss_pred CCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 264 KESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 264 ~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+.+|+++|||||+|.+.++|.+|+..||+.
T Consensus 62 ~~~~~~~G~~fV~f~~~~~A~~A~~~lng~ 91 (104)
T 1jmt_A 62 NLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91 (104)
T ss_dssp SSSSSSEEEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCccEEEEEEECCHHHHHHHHHHHCCC
Confidence 345789999999999999999999999985
No 373
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.00 E-value=0.00042 Score=58.56 Aligned_cols=27 Identities=19% Similarity=-0.103 Sum_probs=25.3
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 267 HDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 267 g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
+.++|||||+|.+.++|.+|+..||+.
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 578999999999999999999999985
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.00016 Score=60.55 Aligned_cols=50 Identities=18% Similarity=-0.035 Sum_probs=35.1
Q ss_pred cccchhhhcCC-CCCCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 239 ESVQSVEKNEP-TKSPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 239 ~~~~e~~l~e~-~ks~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+++++|+++ .+...+.... -.++++|||||+|.+.++|..||..++++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~-----i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~ 77 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLV-----LSSKKPGTAVVEFATVKAAELAVQNEVGL 77 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEE-----EESSSSSEEEEEESCHHHHHHHHHTCCBC
T ss_pred CCCCHHHHHHHHHhcCCEEEEE-----EccCCCCEEEEEECCHHHHHHHHHhcCCC
Confidence 46788888887 3321121110 01578999999999999999999987664
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.00044 Score=58.91 Aligned_cols=64 Identities=8% Similarity=-0.044 Sum_probs=41.1
Q ss_pred ccccccccccCCCccc-----------chhhhcCCCC-CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 226 LKETQDAGAGKEDESV-----------QSVEKNEPTK-SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 226 ~~~~~~~~v~nl~~~~-----------~e~~l~e~~k-s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+.+++|.||.... ++++|++++. ...+.... . ....++|||||+|.+.++|.+|+..||+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~-i---~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLL-L---FDRHPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEE-E---ETTCTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEE-E---ecCCCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 3456667889983332 2456766633 11111110 0 11237999999999999999999999985
No 376
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.82 E-value=0.00019 Score=59.08 Aligned_cols=59 Identities=15% Similarity=0.067 Sum_probs=41.8
Q ss_pred ccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 230 QDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 230 ~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
..+||+||+..+++++|++++. .+..++ ....+. ..|+|||+|.+.++|..||..||+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~-~i~~~~----~~~~afV~f~~~~~a~~Ai~~l~g~ 77 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCE-QVNTDS----ETAVVNVTYSSKDQARQALDKLNGF 77 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEE-EECCSS----SSEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEE-EeecCC----CCCEEEEEECCHHHHHHHHHHhCCC
Confidence 3469999999999999998844 111110 000112 2345999999999999999999885
No 377
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.69 E-value=0.0059 Score=49.92 Aligned_cols=68 Identities=12% Similarity=0.169 Sum_probs=57.9
Q ss_pred ceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCC--ccEEEEEeCCHHHHHHHHHHhCCceeC
Q 008385 129 TKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNID 196 (567)
Q Consensus 129 ~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~--kg~aFVef~~~~~A~~Ai~~Lng~~i~ 196 (567)
+.|.|.+||+++|++++.+.++.++.+..+..+....+.+. -+-|||.|.+.+++......++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57899999999999999999999998888877776544433 356899999999999999999999873
No 378
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.67 E-value=0.0092 Score=48.94 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=45.5
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHh
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLL 190 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~L 190 (567)
...++| ++|..+.-.+|..+|+.||. ..|..+-| --|||.|.+.+.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 455566 99999999999999999994 45566666 38999999999999999876
No 379
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.27 E-value=0.018 Score=47.84 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=56.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhh---C--CceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKV---C--GTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELM 201 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~---~--G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~ 201 (567)
...+|.|.|||..+.++.|.-+|.. . |.|.+|.... +-|+|+|.+...|.+.|.. ..+.|+|..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4689999999999999999999986 2 4777776633 5789999999999999873 47888888888
Q ss_pred EE
Q 008385 202 LK 203 (567)
Q Consensus 202 V~ 203 (567)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 380
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=95.74 E-value=0.0045 Score=53.34 Aligned_cols=65 Identities=14% Similarity=0.037 Sum_probs=41.2
Q ss_pred ccccccccCCCcc--c---chhhhcCC-CC-----CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDES--V---QSVEKNEP-TK-----SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 228 ~~~~~~v~nl~~~--~---~e~~l~e~-~k-----s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
++.++++.|+-.. + .+++|++. ++ ++.+.++.. ....++.++||+||+|.+.++|.+|+..||+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~-~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr 94 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ-GEEEDAEIIVKIFVEFSIASETHKAIQALNGR 94 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE-SSSTTCEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC-CcccCCcceEEEEEEECCHHHHHHHHHHHCCC
Confidence 4556677776321 1 23444444 44 333333211 01235778999999999999999999999985
No 381
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.63 E-value=0.038 Score=47.22 Aligned_cols=70 Identities=13% Similarity=0.090 Sum_probs=55.8
Q ss_pred CCceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCC-eEEEEEE
Q 008385 127 PQTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDG-QELMLKV 204 (567)
Q Consensus 127 ~~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~g-r~l~V~~ 204 (567)
..+-|.|-+.|+.. -..|...|++||.|+...... ...+-.|.|.+..+|.+||. .||..|+| -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35678888888875 577888999999999887621 23599999999999999999 49999985 5555544
No 382
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.54 E-value=0.014 Score=47.97 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=45.1
Q ss_pred eEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 008385 130 KVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (567)
Q Consensus 130 tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln 191 (567)
.++| ++|..+.-.+|..+|+.|| -..|..+-| .-|||.|.+.+.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 4455 9999999999999999999 445666666 489999999999999999764
No 383
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.72 E-value=0.016 Score=49.98 Aligned_cols=56 Identities=4% Similarity=-0.143 Sum_probs=39.9
Q ss_pred ccccccccCCCcc-cchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCC-HHHHHHHHHHHH
Q 008385 228 ETQDAGAGKEDES-VQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEED-RKADQEALEKLT 291 (567)
Q Consensus 228 ~~~~~~v~nl~~~-~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~-~e~a~kAle~ln 291 (567)
...|+||+||+.. ++.++|+++++ .+..+.. ..| ..+|||.|.+ ..+|..|+..||
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~------~~g--~~tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDF------VRG--AKEGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEEC------CTT--CSEEEEEESSCHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEE------ecC--CCEEEEEECCChHHHHHHHHHhh
Confidence 3445799999999 99999999955 2222211 111 1269999999 899999998764
No 384
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=94.63 E-value=0.019 Score=49.04 Aligned_cols=25 Identities=16% Similarity=-0.053 Sum_probs=23.6
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 269 PTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 269 ~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
++|||||.|.+.++|.+|+..|||.
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~ 78 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGR 78 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5899999999999999999999985
No 385
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=94.25 E-value=0.056 Score=44.46 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=52.1
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCC--ccEEEEEeCCHHHHHHHHHHhCCcee
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTP--KGFGFCEFESAEGVLRALRLLNKFNI 195 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~--kg~aFVef~~~~~A~~Ai~~Lng~~i 195 (567)
+-.|.|..||+++|++++.+.++.+-.+.....+....+-+. -+-|||.|.+.+++..-...++|..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 567999999999999999988887655544444333322222 24589999999999999999999887
No 386
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.69 E-value=0.099 Score=45.33 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=52.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCC---------CC-----CCccEEEEEeCCHHHHHHHHHHhCCc
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPS---------NG-----TPKGFGFCEFESAEGVLRALRLLNKF 193 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~---------tg-----~~kg~aFVef~~~~~A~~Ai~~Lng~ 193 (567)
..-|.|-+.|+..+ ..+...|++||.|+.-.-+.... +. ...++-.|.|.+..+|.+||.. ||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCe
Confidence 34566667765544 56778999999987721111100 00 1235789999999999999995 999
Q ss_pred eeCCeEEEEEEc
Q 008385 194 NIDGQELMLKVD 205 (567)
Q Consensus 194 ~i~gr~l~V~~a 205 (567)
.|+|..|-|...
T Consensus 85 ii~G~mIGV~Py 96 (132)
T 3p3d_A 85 VFNGVLLGVIPY 96 (132)
T ss_dssp EETTEECEEEEC
T ss_pred EeCcEEEEEEEC
Confidence 999987766544
No 387
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.64 E-value=0.063 Score=56.89 Aligned_cols=55 Identities=15% Similarity=0.098 Sum_probs=42.2
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHH
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALR 188 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~ 188 (567)
.++|||. ++..+++.+|.++|++||.|.++.+..+. ..|+.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 5899997 79999999999999999999999886542 2699999999999987764
No 388
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=92.61 E-value=0.064 Score=50.94 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=28.2
Q ss_pred CCCCCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 008385 263 NKESHDPTNFGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 263 ~~~~g~~kGfgFV~f~~~e~a~kAle~ln~~ 293 (567)
...+|.++||+||+|.+.++|.+|+..|||.
T Consensus 168 ~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr 198 (222)
T 3dxb_A 168 EEEDAEIIVKIFVEFSIASETHKAIQALNGR 198 (222)
T ss_dssp SSTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCcCceeEEEEEECCHHHHHHHHHHhcCc
Confidence 3567899999999999999999999999985
No 389
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.10 E-value=3.4 Score=44.31 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred CceEEEcCCCCCCcHHHHHHHHhhCCceeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhC
Q 008385 128 QTKVYVGKIAPTADSDFVLSVLKVCGTVKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLN 191 (567)
Q Consensus 128 ~~tlfVgnLp~~~te~~L~~~F~~~G~v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Ln 191 (567)
...++|+ +|..+...+|..+|+.||. ..|..+.+ ..|||.|.+.+.|..++..+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHH
Confidence 4566666 9999999999999999994 46666655 489999999999999999874
No 390
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.68 E-value=1.1 Score=36.17 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=19.2
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 008385 272 FGVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 272 fgFV~f~~~e~a~kAle~ln~~ 293 (567)
.+||+|.+.++|..||. ||+.
T Consensus 51 ~~fVtF~d~~sAlaAi~-mnG~ 71 (91)
T 2dnr_A 51 KMWVTFLEGSSALNVLS-LNGK 71 (91)
T ss_dssp SEEEEESSHHHHHHGGG-GTTC
T ss_pred CEEEEECChHHHHHHHh-cCCe
Confidence 58999999999999998 8875
No 391
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.74 E-value=2.4 Score=34.51 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=18.6
Q ss_pred EEEEeCCHHHHHHHHHHHHHH
Q 008385 273 GVVTEEDRKADQEALEKLTCM 293 (567)
Q Consensus 273 gFV~f~~~e~a~kAle~ln~~ 293 (567)
+||+|.+.++|..||. ||+.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~ 80 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGM 80 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGS
T ss_pred EEEEEcChHHHHHHHh-cCCe
Confidence 9999999999999998 8874
No 392
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.04 E-value=30 Score=26.19 Aligned_cols=67 Identities=9% Similarity=0.139 Sum_probs=41.6
Q ss_pred eEEEcC-CCCCCcHHHHHHHHhhCCc-----eeEEEEeecCCCCCCccEEEEEeCCHHHHHHHHHHhCCceeCCeEEEEE
Q 008385 130 KVYVGK-IAPTADSDFVLSVLKVCGT-----VKSWKRAQYPSNGTPKGFGFCEFESAEGVLRALRLLNKFNIDGQELMLK 203 (567)
Q Consensus 130 tlfVgn-Lp~~~te~~L~~~F~~~G~-----v~~~~i~~~~~tg~~kg~aFVef~~~~~A~~Ai~~Lng~~i~gr~l~V~ 203 (567)
+|||+. --..+...+|..++..-+. |-.+.|.- .|.||+-... .|..++..|++..+.|+.+.|.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d--------~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD--------NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS--------SCEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC--------CcEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 566641 2236677788887776553 44566543 3899988764 4778888899999999999886
Q ss_pred Ec
Q 008385 204 VD 205 (567)
Q Consensus 204 ~a 205 (567)
.+
T Consensus 73 ~~ 74 (76)
T 2g0c_A 73 KA 74 (76)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 393
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=25.77 E-value=1.1e+02 Score=27.61 Aligned_cols=55 Identities=13% Similarity=0.036 Sum_probs=36.9
Q ss_pred EEEcCCCC---------CCcHHHHHHHH--hhCCceeEEEEeecCCCCCCccEEEEEeCC-HHHHHHHHH
Q 008385 131 VYVGKIAP---------TADSDFVLSVL--KVCGTVKSWKRAQYPSNGTPKGFGFCEFES-AEGVLRALR 188 (567)
Q Consensus 131 lfVgnLp~---------~~te~~L~~~F--~~~G~v~~~~i~~~~~tg~~kg~aFVef~~-~~~A~~Ai~ 188 (567)
+.|-|+|. ..+...|...| +.|.++.-. .+.+ ...+.|++.|.|.+ ...-..|+.
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~--~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWN--YLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEEC--SSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-eccc--CCCCceeEEEEecCChHHHHHHHH
Confidence 44556665 24557899977 999987644 4444 24578999999995 555556665
No 394
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=23.26 E-value=67 Score=26.13 Aligned_cols=52 Identities=6% Similarity=-0.105 Sum_probs=35.8
Q ss_pred cccccccCCCcccchhhhcCCCC---CCcccccCCCCCCCCCCCCceEEEEeCCHHHHHHHHHHHH
Q 008385 229 TQDAGAGKEDESVQSVEKNEPTK---SPENLKDNETGNKESHDPTNFGVVTEEDRKADQEALEKLT 291 (567)
Q Consensus 229 ~~~~~v~nl~~~~~e~~l~e~~k---s~~~~k~~~~~~~~~g~~kGfgFV~f~~~e~a~kAle~ln 291 (567)
..|+++ .+|.++--.+|..++. .+.+.-..+ .-|||.|.+++.|..|+..|+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD----------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD----------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET----------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC----------CeEEEEecCHHHHHHHHHhcc
Confidence 344455 8888888888877733 222222222 279999999999999988774
Done!