Query 008386
Match_columns 567
No_of_seqs 80 out of 82
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 23:10:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 6.4E-68 1.4E-72 545.4 15.2 193 149-358 178-375 (375)
2 KOG2092 Uncharacterized conser 100.0 3.5E-60 7.6E-65 477.2 0.6 368 156-548 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 5.8E-32 1.2E-36 273.6 3.4 151 154-328 223-381 (381)
4 PF09746 Membralin: Tumour-ass 42.7 39 0.00084 37.1 5.0 25 12-36 68-92 (375)
5 KOG4220 Muscarinic acetylcholi 29.6 8.8E+02 0.019 27.9 12.7 124 372-501 184-313 (503)
6 PF12679 ABC2_membrane_2: ABC- 25.9 6E+02 0.013 24.4 11.1 28 317-344 172-199 (277)
7 COG4168 SapB ABC-type antimicr 23.9 5.1E+02 0.011 27.9 9.1 113 298-425 77-213 (321)
8 TIGR01257 rim_protein retinal- 22.3 1.9E+03 0.04 30.1 15.4 32 312-343 740-771 (2272)
9 PF12238 MSA-2c: Merozoite sur 18.5 2.7E+02 0.0059 28.4 5.8 26 372-397 93-119 (205)
10 PF11833 DUF3353: Protein of u 17.9 4.4E+02 0.0094 26.4 7.0 26 187-214 19-44 (194)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=6.4e-68 Score=545.40 Aligned_cols=193 Identities=34% Similarity=0.638 Sum_probs=174.2
Q ss_pred CCCCceEEeccceeeccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEe
Q 008386 149 AFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYN 223 (567)
Q Consensus 149 ~fEp~YeYSlEyGfLrLSe~aR~rhNIpt~~VtLd~-~~~CFGd~~srlLLd~FLGYDdILmNSLk----~~~gkGYLrN 223 (567)
..||.+|||+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +++|||||||
T Consensus 178 ~~~y~veYsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n 257 (375)
T PF09746_consen 178 QDEYIVEYSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRN 257 (375)
T ss_pred ccceeEEeehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeee
Confidence 446778999999999999999999999999999996 99999999999999999999999999999 4789999999
Q ss_pred cccCeEEeeccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccccchhHHH
Q 008386 224 CQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIF 303 (567)
Q Consensus 224 v~TgE~YrLv~~~~~p~~~ar~~sYlv~k~~VlimsLFvFF~fT~sVSfLLReSq~rIf~FiVdL~~~~r~~~P~apLi~ 303 (567)
++|||||||+++|+ ++| ++| ++++++|++||++|||||||||||||+|||||+||++++.|++
T Consensus 258 ~~t~e~y~fv~~~~----~~r-~sy--------~~a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~---- 320 (375)
T PF09746_consen 258 VVTGEHYRFVSMWW----MAR-SSY--------LAAFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF---- 320 (375)
T ss_pred cccccceehhhhhh----hhc-cHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc----
Confidence 99999999997752 233 244 4578889999999999999999999999999999998887632
Q ss_pred HHHHHHhhhhhhHhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 008386 304 VHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 358 (567)
Q Consensus 304 ~hVI~sLVFVpvmIGM~afMsEFFnD~tlAFyVILIVWladqFdaIc~RT~iSkr 358 (567)
.|++..|.+||+||||||||+|||||++|||||||+||+|||||+|||||++|||
T Consensus 321 ~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 321 FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred cccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 3556666777888899999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-60 Score=477.17 Aligned_cols=368 Identities=57% Similarity=0.869 Sum_probs=321.2
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeEEecccCeEEeeccc
Q 008386 156 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 235 (567)
Q Consensus 156 YSlEyGfLrLSe~aR~rhNIpt~~VtLd~~~~CFGd~~srlLLd~FLGYDdILmNSLk~~~gkGYLrNv~TgE~YrLv~~ 235 (567)
|.+|+|+..+|++++-+||| +-++.+.++++|||++|++++++.++||||+|++++.+.-+.||.| .+|.|.-|
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frr---- 74 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRR---- 74 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHh----
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 88888744
Q ss_pred cCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhhh
Q 008386 236 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 315 (567)
Q Consensus 236 ~~~p~~~ar~~sYlv~k~~VlimsLFvFF~fT~sVSfLLReSq~rIf~FiVdL~~~~r~~~P~apLi~~hVI~sLVFVpv 315 (567)
-+++++-++.|+|.||+++|+++|++ +++.+++.||+++.||..|.|++++|..++.|++.++.+|+++++||+|+
T Consensus 75 --l~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 75 --LPEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 46778889999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHH--HHHHHhhhhheeccccchhHHHHHHHHH
Q 008386 316 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 393 (567)
Q Consensus 316 mIGM~afMsEFFnD~tlAFyVILIVWladqFdaIc~RT~iSkrywPRFFy--LYfl~Fh~Yfysy~ygFSyLAL~ts~LF 393 (567)
+||+..+++||++|+..+||+++.+|+|+.|.+++.||+++|+|+||.|+ +|.+.||+|||+|.+|++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHH-HHHHHhhhCCCccccccceeccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 008386 394 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 472 (567)
Q Consensus 394 iqHsMLYF~hhfELPAl~r~~~-~r~~ql~~~~~~~~~~s~~~~s~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (567)
++|+.+|||+|+|+|+++++++ +||...+|+|.+++++++++++|+|++ +|....+..+.+.. -+...++.-.-.+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~l--hn~q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPL--HNTQNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCcc--ccccccceEEEee
Confidence 9999999999999999999999 788899999999999999999999999 77655555332221 1223344444444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 008386 473 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 548 (567)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~s--~~~w~lg~~~~~~~~s~~~~frd~r~~ 548 (567)
|+.|+. +-.+.......| ..|..+.+| +. +.|-.|+| |++|+||||++++++++++||+|+++.
T Consensus 308 -~~~g~a---sYl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 -DGGGVA---SYLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred -ccccHH---HHHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 443331 111122222233 333344444 44 78999999 999999999999999999999999973
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=5.8e-32 Score=273.56 Aligned_cols=151 Identities=26% Similarity=0.335 Sum_probs=132.8
Q ss_pred eEEeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeEEecccCeE
Q 008386 154 YLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLYNCQTKEF 229 (567)
Q Consensus 154 YeYSlEyGfLrLSe~aR~rhNIpt~~VtLd~~~~CFGd~~srlLLd~FLGYDdILmNSLk----~~~gkGYLrNv~TgE~ 229 (567)
.||+++||+|||++..|+|++||+++++||+++|||||+..|++|+.|+||||++|.+++ |..++||++|.+|+||
T Consensus 223 veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~tl~~~a~N~~~~G~lhn~q~~eh 302 (381)
T KOG2092|consen 223 VEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHITLNRTARNRTPSGPLHNTQNTEH 302 (381)
T ss_pred HHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHHHHHHHhccCCCCccccccccce
Confidence 479999999999999999999999999999999999999999999999999999999987 4788999999999999
Q ss_pred EeeccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhh----hccccchhHHHHH
Q 008386 230 YNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHA----QHRLPTFQLIFVH 305 (567)
Q Consensus 230 YrLv~~~~~p~~~ar~~sYlv~k~~VlimsLFvFF~fT~sVSfLLReSq~rIf~FiVdL~~~~----r~~~P~apLi~~h 305 (567)
|+|+..+ .++ .+|+.... +| .++|+.+||+|||+|||||+||+||+++. ....|++||+ +
T Consensus 303 y~Fva~~-----~g~-asYl~a~a---~m-----~ifT~~~smllryshhqifvFi~dll~m~el~~a~~~p~apll--t 366 (381)
T KOG2092|consen 303 YSFVADG-----GGV-ASYLEAQA---EM-----EIFTVPASMLLRYSHHQIFVFISDLLLMWELGGASSEPLAPLL--T 366 (381)
T ss_pred EEEeecc-----ccH-HHHHHHhh---hH-----hheeccccccccccccceeehHHHHHHHHHhCCCCCcccchHH--H
Confidence 9999653 344 57885332 23 45699999999999999999999999875 4457999984 7
Q ss_pred HHHHhhhhhhHhHHHHHHHHhcc
Q 008386 306 VIESLVFVPIMIGILFFLFEFYD 328 (567)
Q Consensus 306 VI~sLVFVpvmIGM~afMsEFFn 328 (567)
|+++|| ||+ |+|||+
T Consensus 367 v~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 367 VFLALV------GED--EAEFFA 381 (381)
T ss_pred HHHHHh------Cch--hhhhcC
Confidence 888877 999 999996
No 4
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=42.73 E-value=39 Score=37.07 Aligned_cols=25 Identities=4% Similarity=0.217 Sum_probs=18.9
Q ss_pred hhhHHhhcccccccceeeeecccCC
Q 008386 12 NLWLNWIHSNVRKGKLALKFWRTDM 36 (567)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (567)
.++.+|...|--|-++..+-|+.+-
T Consensus 68 ~~~~~wpR~GIlRveI~~n~~~~~i 92 (375)
T PF09746_consen 68 HVKDDWPRDGILRVEIVRNLESKNI 92 (375)
T ss_pred HhhccccccceeEEEEecCCCccch
Confidence 4567799899888888887666654
No 5
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=29.65 E-value=8.8e+02 Score=27.92 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=56.7
Q ss_pred hhhheeccccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhCCCccccccceecccee----eeecccC
Q 008386 372 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 447 (567)
Q Consensus 372 h~Yfysy~ygFSyLAL~ts~LFiqHsMLYF~hhfELPAl~r~~~~r~~ql~~~~~~~~~~s~~~~s~~~----~~~~n~~ 447 (567)
|+=|++=|+=--+-|..+-++=..-+.+.||+=| |--++|+.++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 5667775553345555555555555566677655 23445544444444333333444444444 2333333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 008386 448 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 501 (567)
Q Consensus 448 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~ 501 (567)
.|+.+.. +...+++.+.+..+..+.++..-.... +..+...++..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 4444333 223333444455555555332211111 22222223456677777754
No 6
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=25.88 E-value=6e+02 Score=24.43 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.0
Q ss_pred hHHHHHHHHhcccchhHHHHHHHHHHhh
Q 008386 317 IGILFFLFEFYDDQLLAFLVLILVWLCE 344 (567)
Q Consensus 317 IGM~afMsEFFnD~tlAFyVILIVWlad 344 (567)
+++-.+++-+.+++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666677888888888888777777544
No 7
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=23.89 E-value=5.1e+02 Score=27.93 Aligned_cols=113 Identities=23% Similarity=0.339 Sum_probs=70.0
Q ss_pred chhHHHHHHHHHhhhhhhHhHHHH-HHHHhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHHHHHHHhhhhhe
Q 008386 298 TFQLIFVHVIESLVFVPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIYFF 376 (567)
Q Consensus 298 ~apLi~~hVI~sLVFVpvmIGM~a-fMsEFFnD~tlAFyVILIVWladqFdaIc~RT~iSkrywPRFFyLYfl~Fh~Yfy 376 (567)
+..|-++..+++++| -+=+||++ .+++=+-|+.+.+.-.+ -|++ --||.-...+|+++.|..-+
T Consensus 77 T~ELC~~af~lal~~-GiPlG~iagv~~~kw~d~~is~~s~~------G~Si--------PvFWlAl~ll~ffslh~~~~ 141 (321)
T COG4168 77 TMELCFLAFGLALIV-GIPLGMIAGVTRHKWLDKLISAISLL------GFSI--------PVFWLALLLLLFFSLHLGWL 141 (321)
T ss_pred HHHHHHHHHHHHHHH-cccHHHHHHhhhhhHHHHHHHHHHHh------ccCc--------hHHHHHHHHHHHHHHhccce
Confidence 355555666666553 22347775 55666666665554221 1221 13788888999999999999
Q ss_pred eccccch---------hHHHHHHHH------------HHHHHHHHHHhhcchhH--HHHHHHHHHHHhhhCC
Q 008386 377 SYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 425 (567)
Q Consensus 377 sy~ygFS---------yLAL~ts~L------------FiqHsMLYF~hhfELPA--l~r~~~~r~~ql~~~~ 425 (567)
.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 142 pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 142 PVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 9888884 788888886 35566543322222232 3478888877766654
No 8
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=22.25 E-value=1.9e+03 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.6
Q ss_pred hhhhHhHHHHHHHHhcccchhHHHHHHHHHHh
Q 008386 312 FVPIMIGILFFLFEFYDDQLLAFLVLILVWLC 343 (567)
Q Consensus 312 FVpvmIGM~afMsEFFnD~tlAFyVILIVWla 343 (567)
|...+|+.-++||-||+...+|=.+..++|++
T Consensus 740 y~~s~I~~~fliS~fFska~~A~~~~~li~f~ 771 (2272)
T TIGR01257 740 FSTATIMQCFLLSTFFSKASLAAACSGVIYFT 771 (2272)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 34556777788899998888888888877765
No 9
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=18.50 E-value=2.7e+02 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=13.8
Q ss_pred hhhheeccc-cchhHHHHHHHHHHHHH
Q 008386 372 HIYFFSYAY-GFSYMALGTAAAFVQHL 397 (567)
Q Consensus 372 h~Yfysy~y-gFSyLAL~ts~LFiqHs 397 (567)
|||==-..+ .+..|+=+|-..+-..+
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred hccCcccccccHHHHHHHHHHHhcccc
Confidence 555444444 45556655555554444
No 10
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=17.95 E-value=4.4e+02 Score=26.38 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=18.4
Q ss_pred CCCcchHHHHHHHhhcCchHHHHhhhhc
Q 008386 187 PCFGNRWQQLLINRFVGYDTILMNSLLH 214 (567)
Q Consensus 187 ~CFGd~~srlLLd~FLGYDdILmNSLk~ 214 (567)
+|=||.-++.-+|. -||.|||.+++.
T Consensus 19 ~y~gd~~~~~~IEa--AYD~ILM~rL~~ 44 (194)
T PF11833_consen 19 QYAGDEKSREAIEA--AYDAILMERLRQ 44 (194)
T ss_pred HhcCCHHHHHHHHH--HHHHHHHHHHHH
Confidence 44466655555543 599999999984
Done!