Query 008386
Match_columns 567
No_of_seqs 80 out of 82
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 00:59:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qys_A TOP7; alpha-beta, novel 7.3 32 0.0011 29.6 -2.8 65 143-207 10-79 (106)
2 2nr1_A NR1 M2, M2; receptor, s 5.1 1.6E+02 0.0056 20.5 0.2 15 2-17 3-17 (27)
3 2kv5_A FST, putative uncharact 5.0 4.1E+02 0.014 19.3 2.3 17 311-327 8-24 (33)
4 2gv5_C SFI1P; centrin, CDC31P, 4.9 3.9E+02 0.013 22.3 2.5 18 83-100 23-40 (73)
5 2pbi_A Regulator of G-protein 4.3 3.3E+02 0.011 28.7 2.0 57 174-233 35-106 (424)
6 1vf5_H Protein PET N; photosyn 4.3 4.5E+02 0.015 18.6 2.0 12 265-276 14-25 (29)
7 1q90_N Cytochrome B6F complex 4.2 4.6E+02 0.016 18.8 2.0 13 264-276 15-27 (31)
8 1e0n_A Hypothetical protein; Y 4.0 4.4E+02 0.015 17.6 1.7 16 214-229 7-22 (27)
9 2k21_A Potassium voltage-gated 3.9 6.3E+02 0.021 23.3 3.2 19 255-273 57-75 (138)
10 4b4a_A TATC, SEC-independent p 3.7 1.2E+03 0.042 22.5 5.4 79 332-411 71-170 (249)
No 1
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=7.29 E-value=32 Score=29.58 Aligned_cols=65 Identities=25% Similarity=0.413 Sum_probs=39.5
Q ss_pred hhhcccCCCCceEEeccceeeccCc---ccccccCceEEEEEeCCCCCCCcchHHHHHHHhh--cCchHH
Q 008386 143 LENRTKAFEPTYLYTMEKGYFLLPE---ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 207 (567)
Q Consensus 143 ~e~~~k~fEp~YeYSlEyGfLrLSe---~aR~rhNIpt~~VtLd~~~~CFGd~~srlLLd~F--LGYDdI 207 (567)
+++.+|.|+++|--..|-.+-..-. +.-...+-.-+.|+|.++.+--.+++...+++-| +||.+|
T Consensus 10 iddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 10 IDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp EECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ecCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 3567888988887776654321111 1112234444556666666656777888888766 788775
No 2
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=5.08 E-value=1.6e+02 Score=20.51 Aligned_cols=15 Identities=47% Similarity=1.247 Sum_probs=8.8
Q ss_pred CCCCcchhhhhhhHHh
Q 008386 2 DADGLTFSAANLWLNW 17 (567)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (567)
++|++++.+| +|..|
T Consensus 3 e~~~~~l~aa-~wF~W 17 (27)
T 2nr1_A 3 NGDALTLSSA-MWFSW 17 (27)
T ss_dssp --CHHHHHHH-HHHHH
T ss_pred cccceehhhh-HHHhh
Confidence 4566666554 67777
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.00 E-value=4.1e+02 Score=19.27 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=12.4
Q ss_pred hhhhhHhHHHHHHHHhc
Q 008386 311 VFVPIMIGILFFLFEFY 327 (567)
Q Consensus 311 VFVpvmIGM~afMsEFF 327 (567)
+..|+.||++--|++-.
T Consensus 8 IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 8 VIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34688899987776654
No 4
>2gv5_C SFI1P; centrin, CDC31P, spindle POLE BODY, centrosome, cell; 3.00A {Saccharomyces cerevisiae}
Probab=4.94 E-value=3.9e+02 Score=22.30 Aligned_cols=18 Identities=17% Similarity=0.348 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 008386 83 IIHFGKKWYRRLSFVWRQ 100 (567)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~ 100 (567)
...|+++|++|.+|.=-.
T Consensus 23 ~~~fls~W~~R~~Fy~~e 40 (73)
T 2gv5_C 23 QSQLFNAWRNRFCFYTEE 40 (73)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 678999999998886443
No 5
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=4.35 E-value=3.3e+02 Score=28.66 Aligned_cols=57 Identities=18% Similarity=0.300 Sum_probs=35.9
Q ss_pred CceEEEEEeC--CCCCCC-cchHHHHHHHhhcCchHHHHhhhhc---cCCceeEEeccc---------CeEEeec
Q 008386 174 NIRTFNISIS--AQHPCF-GNRWQQLLINRFVGYDTILMNSLLH---TPGQGYLYNCQT---------KEFYNLS 233 (567)
Q Consensus 174 NIpt~~VtLd--~~~~CF-Gd~~srlLLd~FLGYDdILmNSLk~---~~gkGYLrNv~T---------gE~YrLv 233 (567)
||++...... .-..|| |..+..+|++++ +.|+ --++.- --..||++.+.. +-.|||.
T Consensus 35 Gv~i~~~~~~~~~~p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq 106 (424)
T 2pbi_A 35 GVRMHNQRVLVTSVPHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQ 106 (424)
T ss_dssp SCCCCCCSSCCCSSCCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEEC
T ss_pred CCCccceeecceeCCCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeC
Confidence 4444433332 235899 999999999998 5665 233321 134788887754 4578886
No 6
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=4.34 E-value=4.5e+02 Score=18.60 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=8.1
Q ss_pred HHHHHHHHhhhh
Q 008386 265 TTTMSVSFTLRE 276 (567)
Q Consensus 265 ~fT~sVSfLLRe 276 (567)
+||.++|++.+.
T Consensus 14 vftfSlslVVWG 25 (29)
T 1vf5_H 14 VFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeeEEEEe
Confidence 446688887663
No 7
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=4.22 E-value=4.6e+02 Score=18.80 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhhh
Q 008386 264 FTTTMSVSFTLRE 276 (567)
Q Consensus 264 F~fT~sVSfLLRe 276 (567)
.+||.++|++.+.
T Consensus 15 vvfTfSlslVVWG 27 (31)
T 1q90_N 15 VMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhheeeEEEEEe
Confidence 3456688887663
No 8
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.96 E-value=4.4e+02 Score=17.58 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.8
Q ss_pred ccCCceeEEecccCeE
Q 008386 214 HTPGQGYLYNCQTKEF 229 (567)
Q Consensus 214 ~~~gkGYLrNv~TgE~ 229 (567)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3577889999999873
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.89 E-value=6.3e+02 Score=23.31 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 008386 255 VLMMSLFVFFTTTMSVSFT 273 (567)
Q Consensus 255 VlimsLFvFF~fT~sVSfL 273 (567)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4568889888887777765
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=3.75 E-value=1.2e+03 Score=22.50 Aligned_cols=79 Identities=19% Similarity=0.377 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhhhhhcee--ecccccccchhHHHH-----HHHHHhhhhheecccc------ch--h----H--HHHHH
Q 008386 332 LAFLVLILVWLCELFTLIS--VRTPISMKFFPRFFL-----LYFLVFHIYFFSYAYG------FS--Y----M--ALGTA 390 (567)
Q Consensus 332 lAFyVILIVWladqFdaIc--~RT~iSkrywPRFFy-----LYfl~Fh~Yfysy~yg------FS--y----L--AL~ts 390 (567)
.++.+-+.+|+.+.+.-|. ++-. -||+..++.. .+..+...||.-+|.. |+ . . .+..-
T Consensus 71 ~g~~~a~P~ilyQiw~Fi~PgLy~~-Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~~~i~~~~~~~i~~Y 149 (249)
T 4b4a_A 71 VGFIIASPVILYQFWRFIEPALYSH-EKRAFIPLLLGSILLFMLGALFAYFIVLPLALKFLLGLGFTQLLATPYLSVDMY 149 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTSCC-CTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTCSSSTTSSSSTTEEHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhHHhhHHHH
Confidence 4555666777777665542 3332 3555555443 2333445555434432 21 1 1 34445
Q ss_pred HHHHHHHHHHHHhhcchhHHH
Q 008386 391 AAFVQHLILYFWNHFEVPALQ 411 (567)
Q Consensus 391 ~LFiqHsMLYF~hhfELPAl~ 411 (567)
.-|+..+++.|=-.||+|.+.
T Consensus 150 l~fv~~l~l~fGl~FelPvi~ 170 (249)
T 4b4a_A 150 ISFVLKLVVAFGIAFEMPIVL 170 (249)
T ss_dssp HHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999763
Done!