Query 008387
Match_columns 567
No_of_seqs 230 out of 906
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 23:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00684 Terpene_cyclase_plant_ 100.0 2E-154 4E-159 1279.5 53.6 532 20-564 1-542 (542)
2 PLN02279 ent-kaur-16-ene synth 100.0 2E-137 4E-142 1166.8 46.2 481 72-567 269-778 (784)
3 PLN02592 ent-copalyl diphospha 100.0 7E-109 2E-113 929.8 42.9 448 72-566 309-800 (800)
4 PF01397 Terpene_synth: Terpen 100.0 1.4E-56 3E-61 429.5 15.1 174 30-212 1-183 (183)
5 PF03936 Terpene_synth_C: Terp 100.0 7.8E-49 1.7E-53 397.1 21.0 269 243-512 1-270 (270)
6 cd00868 Terpene_cyclase_C1 Ter 100.0 8.1E-46 1.8E-50 377.7 30.1 282 257-540 1-284 (284)
7 cd00687 Terpene_cyclase_nonpla 100.0 2.9E-34 6.2E-39 296.8 21.6 245 265-516 19-266 (303)
8 PLN02150 terpene synthase/cycl 100.0 3.4E-32 7.5E-37 235.0 10.1 95 473-567 1-96 (96)
9 cd00385 Isoprenoid_Biosyn_C1 I 99.8 6.1E-21 1.3E-25 186.0 13.2 229 291-534 2-243 (243)
10 PF06330 TRI5: Trichodiene syn 97.7 0.00047 1E-08 73.0 12.5 195 298-515 78-277 (376)
11 cd00686 Terpene_cyclase_cis_tr 97.4 0.003 6.6E-08 66.0 13.8 191 301-514 81-276 (357)
12 PF00494 SQS_PSY: Squalene/phy 93.6 3.6 7.8E-05 41.8 16.5 201 302-530 17-235 (267)
13 cd00867 Trans_IPPS Trans-Isopr 92.3 2.2 4.8E-05 42.2 12.6 118 379-513 86-214 (236)
14 TIGR03465 HpnD squalene syntha 87.7 35 0.00075 34.8 18.5 195 304-533 19-227 (266)
15 TIGR03464 HpnC squalene syntha 80.7 70 0.0015 32.6 18.3 108 304-433 19-131 (266)
16 cd00683 Trans_IPPS_HH Trans-Is 75.4 98 0.0021 31.4 18.7 198 303-534 24-237 (265)
17 TIGR02749 prenyl_cyano solanes 74.8 1.1E+02 0.0024 32.3 15.5 88 378-470 133-220 (322)
18 PLN02890 geranyl diphosphate s 71.9 1.1E+02 0.0024 33.7 15.0 90 378-472 227-316 (422)
19 cd00685 Trans_IPPS_HT Trans-Is 70.6 48 0.001 33.6 11.3 120 379-513 109-239 (259)
20 PLN02857 octaprenyl-diphosphat 67.4 94 0.002 34.2 13.3 89 378-471 227-315 (416)
21 COG0142 IspA Geranylgeranyl py 63.3 1.5E+02 0.0032 31.4 13.5 109 378-492 134-252 (322)
22 TIGR02748 GerC3_HepT heptapren 61.2 2E+02 0.0044 30.2 14.1 87 378-471 129-217 (319)
23 PLN02632 phytoene synthase 60.8 2.3E+02 0.005 30.1 18.6 190 305-526 75-281 (334)
24 KOG1719 Dual specificity phosp 56.4 9.2 0.0002 36.2 2.6 30 473-502 118-148 (183)
25 COG3707 AmiR Response regulato 52.2 12 0.00027 36.6 2.8 45 461-505 129-174 (194)
26 PF03861 ANTAR: ANTAR domain; 50.4 16 0.00035 28.2 2.7 28 478-505 15-42 (56)
27 PRK10888 octaprenyl diphosphat 40.1 4.7E+02 0.01 27.6 15.8 88 378-471 130-218 (323)
28 PF12368 DUF3650: Protein of u 32.1 36 0.00078 22.9 1.7 18 484-501 9-26 (28)
29 CHL00151 preA prenyl transfera 31.5 6.4E+02 0.014 26.5 15.4 87 379-471 135-222 (323)
30 PF13798 PCYCGC: Protein of un 29.6 64 0.0014 30.6 3.7 33 485-524 126-158 (158)
31 PRK10581 geranyltranstransfera 29.3 5.5E+02 0.012 26.8 11.0 112 388-513 152-276 (299)
32 smart00463 SMR Small MutS-rela 27.3 73 0.0016 26.0 3.3 24 489-512 7-30 (80)
33 smart00400 ZnF_CHCC zinc finge 27.2 71 0.0015 24.4 3.0 25 476-500 30-54 (55)
34 COG4738 Predicted transcriptio 26.7 1.8E+02 0.004 26.2 5.8 84 77-170 14-102 (124)
35 COG1093 SUI2 Translation initi 25.5 1E+02 0.0022 31.8 4.5 64 468-534 96-169 (269)
36 PF01713 Smr: Smr domain; Int 25.2 76 0.0016 26.1 3.1 25 489-513 4-28 (83)
37 PF00348 polyprenyl_synt: Poly 23.8 7.6E+02 0.016 24.9 11.0 97 403-510 129-236 (260)
38 KOG3951 Uncharacterized conser 23.0 1.1E+02 0.0024 31.4 4.1 56 149-212 264-319 (321)
39 COG1308 EGD2 Transcription fac 23.0 80 0.0017 28.7 2.9 22 481-502 87-108 (122)
40 KOG1720 Protein tyrosine phosp 21.8 79 0.0017 31.6 2.8 27 476-502 159-186 (225)
41 PF11848 DUF3368: Domain of un 20.0 71 0.0015 23.9 1.7 20 129-148 25-44 (48)
No 1
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=100.00 E-value=1.9e-154 Score=1279.55 Aligned_cols=532 Identities=53% Similarity=0.915 Sum_probs=510.3
Q ss_pred CCCCCCCCCCCcc-ccccccCCcccchHHHHHHHHHHHHHHHHHHhc---cccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 008387 20 RRSSNYHPSIWGD-HFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS---NNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (567)
Q Consensus 20 r~~~~~~ps~W~~-~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~~~~~~~~l~lID~lqrLGi~~hFe~E 95 (567)
||+++||||+||| +|++++++.. ....+.+++++||++||+||.. .. |++++|++||+||||||+|||++|
T Consensus 1 r~~~~~~~~~w~~~~~~s~~~~~~-~~~~~~~~~~~lk~~v~~~~~~~~~~~----~~~~~l~liD~lqrLGi~~hF~~E 75 (542)
T cd00684 1 RPSANFPPSLWGDDHFLSLSSDYS-EEDELEEEIEELKEEVRKMLEDSEYPV----DLFERLWLIDRLQRLGISYHFEDE 75 (542)
T ss_pred CCCCCCCCCcCCCcceeecCCCcc-hhHHHHHHHHHHHHHHHHHHHhcccCC----CHHHHHHHHHHHHHcCchhhhHHH
Confidence 7899999999999 7777655433 2226889999999999999985 55 899999999999999999999999
Q ss_pred HHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccC
Q 008387 96 IKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL 174 (567)
Q Consensus 96 I~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeAs~l 174 (567)
|+++|++||++| +++. .. ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+
T Consensus 76 I~~~L~~i~~~~~~~~~--~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l 150 (542)
T cd00684 76 IKEILDYIYRYWTERGE--SN---EDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHL 150 (542)
T ss_pred HHHHHHHHHHhhccccc--cc---CCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhc
Confidence 999999999998 4331 12 57999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhch
Q 008387 175 RVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 251 (567)
Q Consensus 175 ~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldF 251 (567)
++|||+|||||++||++||++.+++ ++++|+++|++||++|||+++||||||+||++|+++ +++|++|||||||||
T Consensus 151 ~~~gE~iLdeA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~-~~~n~~lLelAkldf 229 (542)
T cd00684 151 SFPGEDILDEALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQE-DDHNETLLELAKLDF 229 (542)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCC-ccccHHHHHHHHHHH
Confidence 9999999999999999999999996 789999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHH
Q 008387 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEEL 331 (567)
Q Consensus 252 n~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl 331 (567)
|+||++||+||+++++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|+
T Consensus 230 n~~Q~~hq~El~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl 309 (542)
T cd00684 230 NILQALHQEELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEEL 309 (542)
T ss_pred HHHhHhHHHHHHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 008387 332 KLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFE 410 (567)
Q Consensus 332 ~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTle 410 (567)
+.||+||+|||+++++++|+|||+||.++++++++++.++.+ +++ +++.|++++|+++++||++||+|+++|++||++
T Consensus 310 ~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~-~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~e 388 (542)
T cd00684 310 ELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGS-YVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFE 388 (542)
T ss_pred HHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999999999999999999 777 899999999999999999999999999999999
Q ss_pred HHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcC
Q 008387 411 ECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 490 (567)
Q Consensus 411 EYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g 490 (567)
|||++|++|+|+++++++++++||.. +|+++++|+..+|+|+++++.++||+|||+||++|+++|+++|+|.|||+|+|
T Consensus 389 EYl~~~~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g 467 (542)
T cd00684 389 EYMENALVSIGLGPLLLTSFLGMGDI-LTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYG 467 (542)
T ss_pred HHHhhhhHHhhHHHHHHHHHHhcCCC-CCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcC
Confidence 99999999999999999999999999 99999999887899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhccc
Q 008387 491 VSEEEACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDP 564 (567)
Q Consensus 491 ~S~EeA~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~p 564 (567)
+|+|+|+++++++|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.||++|++||++|
T Consensus 468 ~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p 542 (542)
T cd00684 468 VSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP 542 (542)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998 7899999999999999999999999999999878999999999998
No 2
>PLN02279 ent-kaur-16-ene synthase
Probab=100.00 E-value=1.7e-137 Score=1166.82 Aligned_cols=481 Identities=28% Similarity=0.448 Sum_probs=457.8
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (567)
++++++|+||+||||||+|||++||+++|+++|++| +.+. +. ..|+++|||+|||||||||+||||||++|+|+
T Consensus 269 ~~fe~l~lvd~L~rlGi~~hF~~EI~~~L~~~~~~~~~~~~--~~---~~Dl~~tAl~FRLLR~hGy~VS~dvf~~F~~~ 343 (784)
T PLN02279 269 DQYARLSMVDTLERLGIDRHFRKEIKSVLDETYRYWLQGEE--EI---FLDLATCALAFRILRLNGYDVSSDPLKQFAED 343 (784)
T ss_pred cHHHHhHHHHHHHHhCCccccHHHHHHHHHHHHHhhccccc--CC---CCCHHHHHHHHHHHHHcCCCCChhHHhhcCCC
Confidence 689999999999999999999999999999999998 4221 11 57999999999999999999999999999965
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhc-------CCCchHHHHHHHccCCccCCc
Q 008387 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH-------LSTPLVDQVEHSLEIPLHRGM 220 (567)
Q Consensus 151 ~G~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~-------~~~~l~~~V~~aL~~P~~~~~ 220 (567)
+ |++++ .+||+||||||||||+++|||+|||||+.||++||++.++. ++++|++||+|||++|||+++
T Consensus 344 -~-F~~~l~~~~~dv~gmL~LY~AS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~~~~~L~~eV~~AL~~P~~~~l 421 (784)
T PLN02279 344 -H-FSDSLGGYLKDTGAVLELFRASQISYPDESLLEKQNSWTSHFLEQGLSNWSKTADRLRKYIKKEVEDALNFPYYANL 421 (784)
T ss_pred -c-ccchhcccchhhHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhcccccccccCccHHHHHHHHhcCchhcCc
Confidence 4 99988 59999999999999999999999999999999999998874 467899999999999999999
Q ss_pred chHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhh
Q 008387 221 PRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVEC 288 (567)
Q Consensus 221 ~rlear~yi~~y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~ 288 (567)
||||||+||++|+++ +. +|++||||||+|||+||++||+||++++|||+++|| .++||||||++||
T Consensus 422 ~RlEaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rWwke~~L-~~L~faRdr~ve~ 499 (784)
T PLN02279 422 ERLANRRSIENYAVD-DTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERWIVENRL-DKLKFARQKLAYC 499 (784)
T ss_pred cHHHHHHHHHHhccc-cchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCeeHHhcCC-ccCCchhhHHHHH
Confidence 999999999999988 75 899999999999999999999999999999999999 6999999999999
Q ss_pred hhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhh-hhccCChhHHHHHHHHHHHHHHH
Q 008387 289 YFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV-AANELPKYMQVCYFALLDVVKEM 367 (567)
Q Consensus 289 yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~-~~~~lPeymk~~~~al~~~~~ei 367 (567)
|||++|++|||+||.+|++|||.+++++++||+||+|||+||++.||+||+|||++ .++.+|+|||+||.+++++++++
T Consensus 500 Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~lpeymki~f~aL~~t~nei 579 (784)
T PLN02279 500 YFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDFCSEQVEIIFSALRSTISEI 579 (784)
T ss_pred HHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhhCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998 66999999999999999999999
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhh
Q 008387 368 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWA 446 (567)
Q Consensus 368 ~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~ 446 (567)
+.++.+ +|. ++.+|++++|++++++|++||+|+++||+||++|||+|+.+|+|+++++..+++++|.. +|+++++|
T Consensus 580 ~~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l~~~~~~G~~-l~eev~e~- 656 (784)
T PLN02279 580 GDKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVLPALYLVGPK-LSEEVVDS- 656 (784)
T ss_pred HHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHHHHHHHhCCC-CCHHHHhC-
Confidence 999765 555 79999999999999999999999999999999999999999999999989899999998 99999999
Q ss_pred cchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCC
Q 008387 447 ISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY--GVSEEEACNKIKGMVEIEWMNINEEIQDP--NHPP 522 (567)
Q Consensus 447 ~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~--g~S~EeA~~~i~~~i~~~wk~ln~e~l~~--~~~p 522 (567)
.++|+|+++++.|+||+|||+||++|++|||+ |+|+|||+|+ |+|+|||+++++++|+++||+||++++++ +++|
T Consensus 657 ~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~~wKeLn~~~l~~~~~~vp 735 (784)
T PLN02279 657 PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIESQRRELLRLVLQEKGSNVP 735 (784)
T ss_pred cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 69999999999999999999999999999998 9999999996 89999999999999999999999999964 5799
Q ss_pred hhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008387 523 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 567 (567)
Q Consensus 523 ~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~~ 567 (567)
++|++++||+||++++||+++||||.+ .||++|++||++||++
T Consensus 736 ~~~~~~~ln~aR~~~~~Y~~~Dgyt~~--~~k~~i~~ll~ePi~l 778 (784)
T PLN02279 736 RECKDLFWKMSKVLHLFYRKDDGFTSN--DMMSLVKSVIYEPVSL 778 (784)
T ss_pred HHHHHHHHHHHHhhhhheeCCCCCChH--HHHHHHHHHhccCCcC
Confidence 999999999999999999999999964 6999999999999985
No 3
>PLN02592 ent-copalyl diphosphate synthase
Probab=100.00 E-value=7e-109 Score=929.75 Aligned_cols=448 Identities=27% Similarity=0.388 Sum_probs=406.5
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (567)
+++++|++||+||||||+|||++||+++|+++|++| ++++++.......|+++|||+|||||||||+||||||++|++
T Consensus 309 d~fE~LwlVDtLqRLGIs~hF~~EI~~iLd~iy~~w~~~g~~~a~~~~~~Dld~TALaFRLLRqhGy~VS~DvF~~F~~- 387 (800)
T PLN02592 309 DLFEHIWAVDRLQRLGISRYFEPEIKECIDYVHRYWTENGICWARNSHVHDIDDTAMGFRLLRLHGHQVSADVFKHFEK- 387 (800)
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHhhcCcccccCCCcCCHHHHHHHHHHHHHcCCCCChHHHHhhcC-
Confidence 789999999999999999999999999999999999 545433210014799999999999999999999999999986
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhh--c------CCCchHHHHHHHccCCccCC
Q 008387 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLS--H------LSTPLVDQVEHSLEIPLHRG 219 (567)
Q Consensus 151 ~G~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~--~------~~~~l~~~V~~aL~~P~~~~ 219 (567)
+|+|++.+ .+|++|||+||||||+++|||.|||+|+.||++||++.+. + ++++|+++|+|||++|||++
T Consensus 388 ~g~F~~~~ge~~~Dv~glL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~l~d~~~~~~~L~~eV~~AL~~P~~~~ 467 (800)
T PLN02592 388 GGEFFCFAGQSTQAVTGMFNLYRASQVLFPGEKILENAKEFSSKFLREKQEANELLDKWIIMKDLPGEVGFALEIPWYAS 467 (800)
T ss_pred CCCccccccccccchHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHhhccccccccccCccHHHHHHHhccChhhcC
Confidence 89999765 8999999999999999999999999999999999999864 2 35789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCccc-------------cHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhh
Q 008387 220 MPRLEARQYISIYEADNSTR-------------NELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLV 286 (567)
Q Consensus 220 ~~rlear~yi~~y~~~~~~~-------------n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~v 286 (567)
+||||||+||++|+++ +++ |++||||||+|||+||++||+||++++|||+++|| .++||||||++
T Consensus 468 l~RlEaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLeLAklDFn~~Qs~hq~EL~~lsrWwke~~L-~~L~faRdr~v 545 (800)
T PLN02592 468 LPRVETRFYIEQYGGE-DDVWIGKTLYRMPYVNNNEYLELAKLDYNNCQALHQLEWDNFQKWYEECNL-GEFGVSRSELL 545 (800)
T ss_pred cchHHHHHHHHHhcCC-cccchhhhhccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHhcCC-CcCCcchhHHH
Confidence 9999999999999987 654 99999999999999999999999999999999999 59999999999
Q ss_pred hhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHH--------hhhhhhhccCCh------h
Q 008387 287 ECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIE--------RWEVVAANELPK------Y 352 (567)
Q Consensus 287 e~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~--------rWD~~~~~~lPe------y 352 (567)
|||||++|++|||+||.+|+++||.+++++++||+||+|||+||+++||++|+ |||.+.+++||+ |
T Consensus 546 e~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~rWd~~~~~~lp~~~~~~~~ 625 (800)
T PLN02592 546 LAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGRRSDHHFNDRNMRRSGSVKT 625 (800)
T ss_pred HHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccccccccCchhhhcccccccchhH
Confidence 99999999999999999999999999999999999999999999999999997 899999999988 9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHH
Q 008387 353 MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALV 431 (567)
Q Consensus 353 mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~ 431 (567)
||+||.+|++++|+++.++.+ +|. ++.+|++++|.++++ +|..+|+ .|+|++.+++++++
T Consensus 626 mki~f~aLy~tineia~~a~~~qGr-~v~~~L~~~W~~l~~------~w~~~g~------------~s~~~~~ilv~~~~ 686 (800)
T PLN02592 626 GEELVGLLLGTLNQLSLDALEAHGR-DISHLLRHAWEMWLL------KWLLEGD------------GRQGEAELLVKTIN 686 (800)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH------HHHhcCc------------eeccchhhHHHHHH
Confidence 999999999999999999888 555 699999999999998 6666665 44566767777777
Q ss_pred -hcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcC-CCHHHHHHHHHHHHHHHHH
Q 008387 432 -GLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG-VSEEEACNKIKGMVEIEWM 509 (567)
Q Consensus 432 -~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g-~S~EeA~~~i~~~i~~~wk 509 (567)
.+|.. +|+++++ +|++.++++.+.||+||++|+++|+.. .| +|+ +|.+++.+.|+.+++
T Consensus 687 l~~g~~-lsee~l~----~~~~~~l~~li~Rl~nDl~t~~~e~~~-------------~~~~~~-~a~~~~~~~ie~~~~ 747 (800)
T PLN02592 687 LTAGRS-LSEELLA----HPQYEQLAQLTNRICYQLGHYKKNKVH-------------INTYNP-EEKSKTTPSIESDMQ 747 (800)
T ss_pred HhcCCC-CCHHHcc----chhHHHHHHHHHHHHHhhhHHhhhccc-------------CCcccH-HHHHHHHHHHHHHHH
Confidence 56998 9999775 699999999999999999999998841 23 455 899999999999999
Q ss_pred HHHHhhcC-C-CCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008387 510 NINEEIQD-P-NHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 566 (567)
Q Consensus 510 ~ln~e~l~-~-~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~ 566 (567)
++.+.+++ . +.||++|++.+||++| +||.. ||+.| ..|+++|..++++||+
T Consensus 748 eL~~lvl~~~~~~vp~~cK~~f~~~~k---~fy~~--~~~~~-~~~~~~i~~vl~epv~ 800 (800)
T PLN02592 748 ELVQLVLQNSSDDIDPVIKQTFLMVAK---SFYYA--AYCDP-GTINYHIAKVLFERVA 800 (800)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHHHH---HHHHh--hcCCH-HHHHHHHHHHhCCCCC
Confidence 99999996 3 5699999999999999 56665 99998 5799999999999985
No 4
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=100.00 E-value=1.4e-56 Score=429.49 Aligned_cols=174 Identities=52% Similarity=0.856 Sum_probs=148.1
Q ss_pred Ccccccc-----ccCCcccchHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHH
Q 008387 30 WGDHFIN-----VSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIY 104 (567)
Q Consensus 30 W~~~fl~-----~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~ 104 (567)
|||+||+ ++++.....+.+.+++++||++||.||..... |++++|+|||+||||||+|||++||+++|+++|
T Consensus 1 W~d~fl~s~s~~~~~~~~~~~~~~~~~~~~Lk~~v~~~l~~~~~---d~~~~L~lID~lqRLGi~yhFe~EI~~~L~~i~ 77 (183)
T PF01397_consen 1 WGDDFLQSLSPSYTACMQSEDEKCKERAEELKEEVRNMLPASYP---DPLEKLELIDTLQRLGISYHFEDEIKEILDSIY 77 (183)
T ss_dssp TTHHHHHHTBHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHSSSS---HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCceecCCCCcchhccchhHHHHHHHHHHHHHHHHHHHhhcCC---CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHh
Confidence 9999994 32221233568899999999999999996542 799999999999999999999999999999999
Q ss_pred hhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCCCchHHH
Q 008387 105 DSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILE 183 (567)
Q Consensus 105 ~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeAs~l~~~gE~iLd 183 (567)
+.| ..+. . ..||++|||+|||||||||+||||||++|+|++|+|++++++||+||||||||||+++|||+|||
T Consensus 78 ~~~~~~~~---~---~~dL~~~AL~FRLLRqhGy~VS~DvF~~F~d~~g~F~~~l~~Dv~glLsLYeAS~l~~~gE~iLd 151 (183)
T PF01397_consen 78 RSWDEDNE---E---IDDLYTTALRFRLLRQHGYYVSSDVFNKFKDEKGNFKESLSNDVKGLLSLYEASHLRFHGEDILD 151 (183)
T ss_dssp HTTTTTSH---T---SSCHHHHHHHHHHHHHTT----GGGGGGGBETTSSBSGGGGGHHHHHHHHHHHHTT--TT-HHHH
T ss_pred hhcccccc---c---cCchhHHHHHHHHHHHcCCcccHHHHhCcccCCCccchhhhHhHHHHHHHHHHHHccCCChHHHH
Confidence 998 3321 1 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhcCCC---chHHHHHHHc
Q 008387 184 EACEFSRKHLKSLLSHLST---PLVDQVEHSL 212 (567)
Q Consensus 184 ea~~ft~~~L~~~~~~~~~---~l~~~V~~aL 212 (567)
||+.||++||++.+++..+ +|+++|+|||
T Consensus 152 eA~~Ft~~~L~~~~~~~~~~~~~L~~~V~~AL 183 (183)
T PF01397_consen 152 EARAFTTKHLKSLLSNLSIPDPHLAKEVKHAL 183 (183)
T ss_dssp HHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCcHHHHHHHHHhC
Confidence 9999999999999986543 4999999997
No 5
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=100.00 E-value=7.8e-49 Score=397.10 Aligned_cols=269 Identities=29% Similarity=0.391 Sum_probs=248.3
Q ss_pred HHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccc
Q 008387 243 ILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIY 322 (567)
Q Consensus 243 lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~f 322 (567)
+|+|||+|||.||++||+|++++++||+++|+..+.+.+|+|++.++|+.++++++|+.+..|+++||+++|+|++||+|
T Consensus 1 ~~~la~~~~~~~~~~~~~e~~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~ 80 (270)
T PF03936_consen 1 YLELAKRDFPHCQALHQQELEEIDRWVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFF 80 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhhcHhhHHHHHHHHHHHHHHHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeecc
Confidence 68999999999999999999999999999999767777899999999999999999996666779999999999999999
Q ss_pred cccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHh
Q 008387 323 DVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWF 401 (567)
Q Consensus 323 D~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~ 401 (567)
|.+|+.++++.|++++.||++...+.+|+++++++.++.++++++...+.+ .+...+..+|++.|.+|++++++|++|+
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 160 (270)
T PF03936_consen 81 DDGGSAEELEALTDAVERWDPNSGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWREYLNAYLWEARWR 160 (270)
T ss_dssp HTTSHHHHHHHHHHHHHHTSSGGGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998888899999999999999999999988877 2210256679999999999999999999
Q ss_pred hcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCch
Q 008387 402 HAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSS 481 (567)
Q Consensus 402 ~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~ 481 (567)
..|++||++||+++|+.|+|+++++.++.++||.. +++...+++.++|.+.++++.+++|+|||+||+||+++|+.+|.
T Consensus 161 ~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~KE~~~g~~~N~ 239 (270)
T PF03936_consen 161 ERGRIPSLEEYLEMRRHTSGVYPCLALIEFALEFA-LGELPPEVLEHPPMLRRLAADIIRLVNDLYSYKKEIARGDVHNL 239 (270)
T ss_dssp HTTS--SHHHHHHHHHHHTSHHHHHHHHHHHCSSC-HTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSH
T ss_pred ccCCCCCHHHHHHhccccccccHHHHHHHHhCCCc-cccccHHHHHhchHHHHHHHHHHHHhcccchhhcchhhcccccH
Confidence 99999999999999999999999999999999776 77777777677788999999999999999999999999999999
Q ss_pred hhHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Q 008387 482 VECYVQQYGVSEEEACNKIKGMVEIEWMNIN 512 (567)
Q Consensus 482 V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln 512 (567)
|.|+|+++|+|.|+|++++.+|+++++++||
T Consensus 240 v~~l~~~~~~s~e~A~~~v~~~~~~~~~efn 270 (270)
T PF03936_consen 240 VVVLMNEHGLSLEEAVDEVAEMINECIREFN 270 (270)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998
No 6
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=100.00 E-value=8.1e-46 Score=377.70 Aligned_cols=282 Identities=50% Similarity=0.901 Sum_probs=265.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHH
Q 008387 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (567)
Q Consensus 257 ~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (567)
.||+|++++++||+++||....+++|.+...+|+|+++++++|+.+..|+++||+++|+|++||+||.+|+.+++..+++
T Consensus 1 ~~~~e~~~~~~W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~ 80 (284)
T cd00868 1 LHQEELKELSRWWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTE 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHH
Confidence 49999999999999999976666999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhh
Q 008387 337 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 415 (567)
Q Consensus 337 ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~ 415 (567)
+++||+....+.+|+++++++.++.++++++...+.+ ++. ....++++.|.+|++++.+||+|+..|++||++||+.+
T Consensus 81 ~~~~~~~~~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~ 159 (284)
T cd00868 81 AVERWDISAIDELPEYMKPVFKALYDLVNEIEEELAKEGGS-ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLEN 159 (284)
T ss_pred HHHhcChhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHh
Confidence 9999999888999999999999999999999998888 555 68999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCCHHH
Q 008387 416 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 495 (567)
Q Consensus 416 ~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S~Ee 495 (567)
|+.|+|+++++.++++++|.. +|++.+.+.+...++++.++.+++|+||++||+||+.+|+.+|+|.|||+++|+|.++
T Consensus 160 R~~~~g~~~~~~l~~~~~g~~-l~~~~~~~~~~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~N~v~vl~~~~~~~~~e 238 (284)
T cd00868 160 RRVSIGYPPLLALSFLGMGDI-LPEEAFEWLPSYPKLVRASSTIGRLLNDIASYEKEIARGEVANSVECYMKEYGVSEEE 238 (284)
T ss_pred ceehhhHHHHHHHHHHHcCCC-CCHHHHHHhhhhHHHHHHHHHHHHHhccchHHHHHHccCCcccHHHHHHhccCCCHHH
Confidence 999999999999999999999 9995555558889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCC-CCCChhHHHHHHHHhhhhchhc
Q 008387 496 ACNKIKGMVEIEWMNINEEIQDP-NHPPLQWLLPSLNLARMMVVLY 540 (567)
Q Consensus 496 A~~~i~~~i~~~wk~ln~e~l~~-~~~p~~~~~~~lN~aR~~~~~Y 540 (567)
|++++.++++++|+++++.+.+. ++.|+.+++.+.|.+|.....|
T Consensus 239 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~w~ 284 (284)
T cd00868 239 ALEELRKMIEEAWKELNEEVLKLSSDVPRAVLETLLNLARGIYVWY 284 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhhhhcC
Confidence 99999999999999999999864 4678999999999999887654
No 7
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=100.00 E-value=2.9e-34 Score=296.84 Aligned_cols=245 Identities=17% Similarity=0.099 Sum_probs=215.6
Q ss_pred HHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhcccccc-CCHHHHHHHHHHHHhhh
Q 008387 265 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY-GTLEELKLFTHAIERWE 342 (567)
Q Consensus 265 lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y-gt~eEl~~ft~ai~rWD 342 (567)
...|.++.|+.. -+.+|+++..++|+.++.++.|+++..|+ ++|+++.|+|++||+||.. +++++++.+++.+.++.
T Consensus 19 ~~~w~~~~~l~~-~~~~~~~~~~~~~~~~~a~~~P~a~~~~l~l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~ 97 (303)
T cd00687 19 YLEWVLEEMLIP-SEKAEKRFLSADFGDLAALFYPDADDERLMLAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL 97 (303)
T ss_pred HHHHHHHcCCCC-cchhHHHHhcCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc
Confidence 457999997742 34899999999999988899999999999 7789999999999999987 59999999999888855
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccch
Q 008387 343 VVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGY 422 (567)
Q Consensus 343 ~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~ 422 (567)
......-|....++..++.++++++...+.+ ....+|++.|.+|+.++++|++|+.+|++||++||+++|+.|+|+
T Consensus 98 ~~~~~~~~~~~~p~~~~~~d~~~r~~~~~~~----~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~ 173 (303)
T cd00687 98 RGDGLDSPDDATPLEFGLADLWRRTLARMSA----EWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGA 173 (303)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccc
Confidence 4322111467788899999999888655433 458899999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhh-hcCCCCchhhHHHHhcCCCHHHHHHHHH
Q 008387 423 PMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ-ERGDAPSSVECYVQQYGVSEEEACNKIK 501 (567)
Q Consensus 423 ~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~-~rG~~~n~V~cyMke~g~S~EeA~~~i~ 501 (567)
.+++.++++++|.. +|+++.+. +...+++++++.+++|+|||+||+||+ +.|+.+|+|.|+|+++|+|.|+|++++.
T Consensus 174 ~~~~~l~~~~~g~~-lp~~~~~~-~~~~~l~~~~~~~~~l~NDl~S~~KE~~~~g~~~N~V~vl~~~~g~s~~eA~~~~~ 251 (303)
T cd00687 174 DPCLGLSEFIGGPE-VPAAVRLD-PVMRALEALASDAIALVNDIYSYEKEIKANGEVHNLVKVLAEEHGLSLEEAISVVR 251 (303)
T ss_pred cccHHHHHHhcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHhhHHHHHhCCccchHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999998 99998766 556679999999999999999999999 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 008387 502 GMVEIEWMNINEEIQ 516 (567)
Q Consensus 502 ~~i~~~wk~ln~e~l 516 (567)
++++++++++.+..-
T Consensus 252 ~~~~~~~~~f~~~~~ 266 (303)
T cd00687 252 DMHNERITQFEELEA 266 (303)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877543
No 8
>PLN02150 terpene synthase/cyclase family protein
Probab=99.97 E-value=3.4e-32 Score=234.96 Aligned_cols=95 Identities=40% Similarity=0.688 Sum_probs=92.6
Q ss_pred hhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchh-cccCCCCCCCCh
Q 008387 473 QERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVL-YQNGDGYTNSTG 551 (567)
Q Consensus 473 ~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~-Y~~~Dg~t~~~~ 551 (567)
++|||++|+|+|||||||+|+|||+++++++|+++||+||+|+++++++|++++++++|+||+++|+ |++|||||.+++
T Consensus 1 ~~rg~vaSsIeCYMke~g~seeeA~~~i~~li~~~WK~iN~e~l~~~~~p~~~~~~~~NlaR~~~~~~Y~~~Dg~t~~~~ 80 (96)
T PLN02150 1 MRRGEVANGVNCYMKQHGVTKEEAVSELKKMIRDNYKIVMEEFLTIKDVPRPVLVRCLNLARLIDVYCYNEGDGFTYPHG 80 (96)
T ss_pred CCCCcchHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhheecCCCCCCCCcH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999 999999999888
Q ss_pred hHHHHHHhhhcccCCC
Q 008387 552 KTKDRIASLLVDPLPM 567 (567)
Q Consensus 552 ~~k~~I~~ll~~pi~~ 567 (567)
.+|++|++||++|||+
T Consensus 81 ~~K~~I~sLlv~pi~i 96 (96)
T PLN02150 81 KLKDLITSLFFHPLPL 96 (96)
T ss_pred HHHHHHHHHhccCCCC
Confidence 8999999999999986
No 9
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.85 E-value=6.1e-21 Score=186.04 Aligned_cols=229 Identities=28% Similarity=0.346 Sum_probs=185.4
Q ss_pred hhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHH
Q 008387 291 WILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDK 370 (567)
Q Consensus 291 w~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~ 370 (567)
+.++.++.|+++..|..++++.+|++++||++|..++..........+ .....|..+...+..+.+.++++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (243)
T cd00385 2 RPLAVLLEPEASRLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAV------AIDGLPEAILAGDLLLADAFEELARE 75 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhH------HhcCchHHHHHHHHHHHHHHHHHHhC
Confidence 456677789888999999999999999999999888766655544332 22345777778888888888888643
Q ss_pred HhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchh
Q 008387 371 LVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVP 450 (567)
Q Consensus 371 ~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p 450 (567)
.. . ....++.+.|.+++.++..|+.|... .+||++||+.++..++ +.++..+..++++.. .++ ..+.+...
T Consensus 76 ~~---~-~~~~~~~~~~~~~~~g~~~d~~~~~~-~~~t~~ey~~~~~~~t-~~~~~~~~~~~~~~~-~~~--~~~~~~~~ 146 (243)
T cd00385 76 GS---P-EALEILAEALLDLLEGQLLDLKWRRE-YVPTLEEYLEYCRYKT-AGLVGALCLLGAGLS-GGE--AELLEALR 146 (243)
T ss_pred CC---H-HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHh-CCC--HHHHHHHH
Confidence 22 2 46889999999999999999999876 8899999999999998 555656666766665 555 33445678
Q ss_pred HHHHHHHHHHHHhcCCcchhhhhhcC-CCCchhhHHHHhcCC------------CHHHHHHHHHHHHHHHHHHHHHhhcC
Q 008387 451 KIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVECYVQQYGV------------SEEEACNKIKGMVEIEWMNINEEIQD 517 (567)
Q Consensus 451 ~i~~~~~~i~RL~NDI~S~~~E~~rG-~~~n~V~cyMke~g~------------S~EeA~~~i~~~i~~~wk~ln~e~l~ 517 (567)
++....+.+.+|.||+.|+.+|.++| +..|++.++|+++|+ +.++|.+++.++++.+|+.+++....
T Consensus 147 ~~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (243)
T cd00385 147 KLGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEYGVPAEDLLLVEKSGSLEEALEELAKLAEEALKELNELILS 226 (243)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHhCChhhHHHHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999996 778999999999999 88999999999999999999997775
Q ss_pred CCCCChhHHHHHHHHhh
Q 008387 518 PNHPPLQWLLPSLNLAR 534 (567)
Q Consensus 518 ~~~~p~~~~~~~lN~aR 534 (567)
....+.++++.+.++.|
T Consensus 227 ~~~~~~~~~~~~~~~~~ 243 (243)
T cd00385 227 LPDVPRALLALALNLYR 243 (243)
T ss_pred cHHHHHHHHHHHHHHhC
Confidence 33456677777777653
No 10
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4.2.3.6). TRI5 encodes the enzyme trichodiene synthase, which has been shown to catalyse the first step in the trichothecene pathways of Fusarium and Trichothecium species [, ].; GO: 0045482 trichodiene synthase activity, 0016106 sesquiterpenoid biosynthetic process; PDB: 1YYT_A 2PS5_A 2AEL_A 1YYS_A 1YJ4_A 2Q9Y_A 2PS4_A 2AEK_B 1KIY_B 2PS7_A ....
Probab=97.67 E-value=0.00047 Score=72.99 Aligned_cols=195 Identities=12% Similarity=0.122 Sum_probs=113.7
Q ss_pred CCCcchh-hHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 008387 298 EPKYSTT-RKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 376 (567)
Q Consensus 298 eP~~s~~-Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~ 376 (567)
.|..+.. ++.++-+.++++++||.++.. .+++..|-+-+-. +..... ++...+.+.+.++.... | +
T Consensus 78 y~~~~~evqv~IaiyT~yvi~iDD~~~~~--~~~l~~F~~~l~~---Gq~Q~~-----p~L~~~~~~L~~~~~~f--g-p 144 (376)
T PF06330_consen 78 YPHLPKEVQVAIAIYTTYVIIIDDSSQEP--SDDLRTFHQRLIL---GQPQKH-----PLLDGFASLLREMWRHF--G-P 144 (376)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHTT--S-S--HHHHTTHHHHHHH---T---SS-----HHHHHHHHHHHHHHTTS----H
T ss_pred cCCCCHHHHHHHHHHHHHHHhcccccccc--cHHHHHHHHHHhc---CCCCCC-----HHHHHHHHHHHHHHHHc--c-h
Confidence 4777766 568889999999999998765 4666666654433 111111 23345555444443221 2 2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHH---H
Q 008387 377 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKI---I 453 (567)
Q Consensus 377 ~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i---~ 453 (567)
++-.-+.++--+++.+..-|.+.. +-.|.-..|-..-|.=+|.....+...+-. .. -|+. .....+ +
T Consensus 145 -f~anmI~~STLdFi~g~~LE~~~f--~~~p~A~~FP~fLR~ktGlsEaYA~FiFPk-~~-fpe~-----~~~~~y~~AI 214 (376)
T PF06330_consen 145 -FCANMIVKSTLDFINGCWLEQKNF--HGSPGAPDFPDFLRRKTGLSEAYAFFIFPK-AL-FPEV-----EYFIQYTPAI 214 (376)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTT------TT-TTHHHHHHHHHH-HHHHHHHT--T-TT-S-TT-----TTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHhhcccC--CCCCCCccccHHHHhccCcchhheeeeccc-cc-CChH-----HHHHHHHHHH
Confidence 566778888899999999997643 223544445554445555555544333321 11 2222 223333 3
Q ss_pred HHHHHHHHHhcCCcchhhhhh-cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008387 454 RSSSLIARLDDDVHTYKVEQE-RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 515 (567)
Q Consensus 454 ~~~~~i~RL~NDI~S~~~E~~-rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~e~ 515 (567)
--....+-++|||.||=||.- -|+..|.|.-+-.-+|+|.-+|...+.+-.-.+-+++.+-.
T Consensus 215 pdl~~fi~~~NDILSFYKE~l~a~E~~NyI~n~A~~~g~S~~eaL~~l~~eti~a~~rv~~vL 277 (376)
T PF06330_consen 215 PDLMRFINYVNDILSFYKEELVAGETGNYIHNRARVHGVSILEALRELTDETIEAVERVRRVL 277 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSSSSHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHhhcccccccchhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444468999999999987 78889999877777899999999998766666666665543
No 11
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1. This CD includes the terpenoid cyclase, trichodiene synthase, which catalyzes the cyclization of farnesyl diphosphate (FPP) to trichodiene using a cis-trans pathway, and is the first committed step in the biosynthesis of trichothecene toxins and antibiotics. As with other enzymes with the 'terpenoid synthase fold', this enzyme has two conserved metal binding motifs that coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function as homodimers and are found in several genera of fungi.
Probab=97.38 E-value=0.003 Score=66.03 Aligned_cols=191 Identities=14% Similarity=0.081 Sum_probs=115.0
Q ss_pred cchhhH-HHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 008387 301 YSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCC 379 (567)
Q Consensus 301 ~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~ 379 (567)
.|..=. .++-..+.++++||.-|.. .+.++.|.+-+.. +.....| -...+...+-+....+ | + ++
T Consensus 81 ~skev~~~isi~~tY~~~lDD~~~e~--~~~m~~f~~dL~~---G~~qkhP-~l~~v~~~l~~~lr~f------G-p-F~ 146 (357)
T cd00686 81 VSKECMADLSIHYTYTLVLDDSKDDP--YPTMVNYFDDLQA---GREQAHP-WWALVNEHFPNVLRHF------G-P-FC 146 (357)
T ss_pred CCHHHHHHHHHHHheeeEeccccccc--chHHHHHHHHHhc---CCCCCCc-HHHHHHHHHHHHHHHh------h-h-hh
Confidence 555533 5566677888999997754 3455666555443 1112223 1111122222222222 2 2 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH-
Q 008387 380 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL- 458 (567)
Q Consensus 380 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~- 458 (567)
-.-+.++--+++.+.+-|... -+..|.-.+|-...|.=+|.+-+.+++. -|++.|.-...+..+..+...
T Consensus 147 s~~IikSTLdFv~g~~iEq~n--f~~~p~A~~fP~ylR~ksGl~E~yA~Fi-------FPk~~FpE~~~~~qi~~AIp~~ 217 (357)
T cd00686 147 SLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGASL-------WPKEQFNERSLFLEITSAIAQM 217 (357)
T ss_pred HHHHHHHHHHHHHHHHHhhhc--cCCCCCCcccchHHHhccCCcceeEEEe-------cchhhCchHhhHHHhhHHHHHH
Confidence 666778888999999999663 3446776777777666666554433222 344433222222333334433
Q ss_pred --HHHHhcCCcchhhhhhc-CCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh
Q 008387 459 --IARLDDDVHTYKVEQER-GDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINEE 514 (567)
Q Consensus 459 --i~RL~NDI~S~~~E~~r-G~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~e 514 (567)
..-++|||.||=||.-. ++-.|.|.-|-+.+|+|..+|.+.+.+-.-.+-+++.+-
T Consensus 218 ~~~i~~~NDILSFYKEe~~~~E~~n~V~Nya~~~GiS~~eAL~~lt~dTv~~s~rv~~V 276 (357)
T cd00686 218 ENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (357)
T ss_pred HHHHHhhhhhhheehhhcccccccchHHHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999855 456788888888899999999998877766666666553
No 12
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=93.56 E-value=3.6 Score=41.76 Aligned_cols=201 Identities=19% Similarity=0.216 Sum_probs=105.9
Q ss_pred chhhHHHhhHHHHHHhhhccccccCCHHH----HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008387 302 STTRKFMTKIIAIASVIDDIYDVYGTLEE----LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPL 377 (567)
Q Consensus 302 s~~Rl~laK~~~l~~viDD~fD~ygt~eE----l~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~ 377 (567)
...|-.+.-+-.+.-.+||+-|....+.+ ++-+-+++...-....+..|....++..++..+.+..
T Consensus 17 ~~~R~~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~~---------- 86 (267)
T PF00494_consen 17 KEKRPAVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRRY---------- 86 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCCS----------
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHHH----------
Confidence 34455556777888889999997764332 4445555554321111122333456666665544322
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
.--++.+.+++.++.+. .....++|++|+......++|....+++-.++.... ..++.+.+ ...+
T Consensus 87 ---~l~~~~l~~li~~~~~d---l~~~~~~t~~~L~~Y~~~vag~vg~l~~~~~~~~~~--~~~~~~~a-------~~lG 151 (267)
T PF00494_consen 87 ---GLPREPLLELIDGMEMD---LEFTPYETFADLERYCYYVAGSVGLLLLQLLGAHDP--DEAARDAA-------RALG 151 (267)
T ss_dssp ---HHHHHHHHHHHHHHHHC---TT-S--SSHHHHHHHHHHHTHHHHHHHHHHHHSSTS--HHHHHHHH-------HHHH
T ss_pred ---hhhHHHHHHHHHHhccc---ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc--hhhHHHHH-------HHHH
Confidence 13445567777777533 333557899999999999998877777666655322 11333332 2333
Q ss_pred HHHHHhcCCcchhhh-hhcCC--CCchhhHHHHhcCCCHHHHHHH----------HHHHHHHHHHHHHHhhcCCCCC-Ch
Q 008387 458 LIARLDDDVHTYKVE-QERGD--APSSVECYVQQYGVSEEEACNK----------IKGMVEIEWMNINEEIQDPNHP-PL 523 (567)
Q Consensus 458 ~i~RL~NDI~S~~~E-~~rG~--~~n~V~cyMke~g~S~EeA~~~----------i~~~i~~~wk~ln~e~l~~~~~-p~ 523 (567)
..+-+.|=+...... ..+|- ++.- .|.++|+|.++-... +..+++.+...+.+..--...+ |.
T Consensus 152 ~alql~nilRd~~~D~~~~gR~ylP~d---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 152 RALQLTNILRDIPEDALRRGRIYLPLD---DLRRFGVTPEDLLAGRPRSERLRALIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp HHHHHHHHHHTHHHH-HHTT---S-HH---HHHHTTSSHHHHHHHG-GGHHHHHHHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred HHHHHHHHHHHhHHHHHhcccccCCch---hHHHcCCCHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 333333333333344 34554 3443 468899988765432 4555555555555433323346 44
Q ss_pred hHHHHHH
Q 008387 524 QWLLPSL 530 (567)
Q Consensus 524 ~~~~~~l 530 (567)
.+...+.
T Consensus 229 ~~~~~~~ 235 (267)
T PF00494_consen 229 RARPAVA 235 (267)
T ss_dssp THHHHHH
T ss_pred hhhHHHH
Confidence 3443333
No 13
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=92.29 E-value=2.2 Score=42.22 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhcc-ccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTM-SSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~-Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
....+.+...+++.+...+..|... ..||.++|++.... |+++....+......+.. +++.. ....++-+..+
T Consensus 86 ~~~~~~~~~~~~~~Gq~~Dl~~~~~-~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~lG 159 (236)
T cd00867 86 ALELFAEALRELLEGQALDLEFERD-TYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA--DDEQA---EALKDYGRALG 159 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc--CHHHH---HHHHHHHHHHH
Confidence 4566778889999999999988654 57999999999888 766654433333322222 23222 23356777888
Q ss_pred HHHHHhcCCcchhhhh----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 458 LIARLDDDVHTYKVEQ----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 458 ~i~RL~NDI~S~~~E~----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..-+.||+..+.... ++|.. +...+++ .+.+.+.++.+++.+..
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~-tlp~~~~----------~~~~~~~~~~~~~~~~~ 214 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRI-TLPVILA----------RERAAEYAEEAYAALEA 214 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCc-hHHHHHH----------HHHHHHHHHHHHHHHHh
Confidence 8889999998876654 45554 5555555 55666666666665544
No 14
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=87.69 E-value=35 Score=34.79 Aligned_cols=195 Identities=17% Similarity=0.171 Sum_probs=98.0
Q ss_pred hhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhh--h-hccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchH
Q 008387 304 TRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVV--A-ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCM 380 (567)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~--~-~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~ 380 (567)
.|-.++-+-.+.-.+||+-|..+++++-+.- ++.|... . ...-| -.++..++.+++... +- .
T Consensus 19 ~R~~~~alYaf~r~~d~i~D~~~~~~~~~~~---L~~w~~~l~~~~~g~~--~~pv~~al~~~~~~~------~l---~- 83 (266)
T TIGR03465 19 RRRAMTALYAFCREVDDIVDEDSDPEVAQAK---LAWWRAEIDRLYAGAP--SHPVARALADPARRF------DL---P- 83 (266)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCchHHHHH---HHHHHHHHHHHhCCCC--CChHHHHHHHHHHHc------CC---C-
Confidence 4445556677777899999985554332221 2223211 0 01112 234556665554332 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHH
Q 008387 381 YYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIA 460 (567)
Q Consensus 381 ~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~ 460 (567)
++.+.+++.++.+.. ....++|++|+......+.|.-..+++-.++. . ++.........-.-+..+
T Consensus 84 ---~~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~vg~l~~~llg~--~--~~~~~~~a~~lG~Alqlt---- 149 (266)
T TIGR03465 84 ---QEDFLEVIDGMEMDL---EQTRYPDFAELDLYCDRVAGAVGRLSARIFGA--T--DARTLEYAHHLGRALQLT---- 149 (266)
T ss_pred ---HHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHHHhHHHHHHHHHHHhCC--C--ChhHHHHHHHHHHHHHHH----
Confidence 234666777765333 33467899998888888777666655555532 2 222222221111122222
Q ss_pred HHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHH
Q 008387 461 RLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPS 529 (567)
Q Consensus 461 RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~E---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~ 529 (567)
-++-|+. ...++|-+ +-- -|.++|+|.+ ....-+..+++.+..-+.+..--...+|......+
T Consensus 150 nilRdv~---eD~~~gR~ylP~~---~l~~~gv~~~~l~~~~~~~~~~~~~~~l~~~A~~~l~~a~~~~~~~p~~~~~~~ 223 (266)
T TIGR03465 150 NILRDVG---EDARRGRIYLPAE---ELQRFGVPAADILEGRYSPALAALCRFQAERARAHYAEADALLPACDRRAQRAA 223 (266)
T ss_pred HHHHHhH---HHHhCCCeecCHH---HHHHcCCCHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhCCHhhhHHH
Confidence 2233443 33456654 322 3577898876 34455666666666655554322345775444443
Q ss_pred HHHh
Q 008387 530 LNLA 533 (567)
Q Consensus 530 lN~a 533 (567)
+-.+
T Consensus 224 ~~~~ 227 (266)
T TIGR03465 224 RAMA 227 (266)
T ss_pred HHHH
Confidence 3333
No 15
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=80.74 E-value=70 Score=32.63 Aligned_cols=108 Identities=23% Similarity=0.220 Sum_probs=59.9
Q ss_pred hhHHHhhHHHHHHhhhcccccc-CCHHH----HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcc
Q 008387 304 TRKFMTKIIAIASVIDDIYDVY-GTLEE----LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLC 378 (567)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~y-gt~eE----l~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~ 378 (567)
.|..+.-+-.+.=++||+-|.. +++++ |+-+-+++.. ....-| -.++..++.+++.+.. -
T Consensus 19 ~R~~~~alYAf~R~~Ddi~D~~~~~~~~~~~~L~~wr~~l~~----~~~g~~--~~pv~~aL~~~~~~~~-------l-- 83 (266)
T TIGR03464 19 LRAPIHAVYAFARTADDIADEGDGSAEERLALLDDFRAELDA----IYSGEP--AAPVFVALARTVQRHG-------L-- 83 (266)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHH----HhCCCC--CChHHHHHHHHHHHcC-------C--
Confidence 3444455666777899999975 45443 2333333322 111112 1245667766665431 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL 433 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m 433 (567)
. ++.+.+++.++... ......+|++|.......++|+-..+++..++.
T Consensus 84 ~----~~~~~~li~~~~~D---l~~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~g~ 131 (266)
T TIGR03464 84 P----IEPFLDLLDAFRQD---VVVTRYATWAELLDYCRYSANPVGRLVLDLYGA 131 (266)
T ss_pred C----hHHHHHHHHHHHHh---ccCCCCCCHHHHHHHHHHhHHHHHHHHHHHcCC
Confidence 1 23445556665422 234457899999998888888776666655543
No 16
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=75.38 E-value=98 Score=31.38 Aligned_cols=198 Identities=17% Similarity=0.210 Sum_probs=99.2
Q ss_pred hhhHHHhhHHHHHHhhhccccccCCH-H----HHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCc
Q 008387 303 TTRKFMTKIIAIASVIDDIYDVYGTL-E----ELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPL 377 (567)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~ygt~-e----El~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~ 377 (567)
..|..+.-+-.+.-.+||+-|..... . .|+-+-+++..-.. +..|. .++..++..+..+. +
T Consensus 24 ~~R~~~~alYaf~r~~Ddi~D~~~~~~~~~~~~L~~w~~~l~~~~~---~~~~~--~pv~~al~~~~~~~-------~-- 89 (265)
T cd00683 24 ELRRAVCALYAFCRAADDIVDDPAAPPDEKLALLDAFRAELDAAYW---GGAPT--HPVLRALADLARRY-------G-- 89 (265)
T ss_pred HHHHHHHHHHHHHHHHHhhhhCCCCCchhHHHHHHHHHHHHHHHHc---CCCCC--ChHHHHHHHHHHHc-------C--
Confidence 34555556667777899999976533 2 23333333333111 11121 25566766655422 1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
- -++.+.+++.++..... ....||++|.......+.|.-..+++-.++.+ . +++......+.-.-+..+
T Consensus 90 l----~~~~~~~li~g~~~Dl~---~~~~~t~~eL~~Y~~~vAg~vg~l~~~i~~~~-~--~~~~~~~A~~lG~Alqlt- 158 (265)
T cd00683 90 I----PREPFRDLLAGMAMDLD---KRRYETLDELDEYCYYVAGVVGLMLLRVFGAS-S--DEAALERARALGLALQLT- 158 (265)
T ss_pred C----CHHHHHHHHHHHHHhCC---CCCCCCHHHHHHHHHHhHHHHHHHHHHHhCCC-C--ChHHHHHHHHHHHHHHHH-
Confidence 1 12446667777764443 45678998888888887776666555555431 1 222222221112222222
Q ss_pred HHHHHhcCCcchhhhhhcCC--CCchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 008387 458 LIARLDDDVHTYKVEQERGD--APSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 526 (567)
Q Consensus 458 ~i~RL~NDI~S~~~E~~rG~--~~n~V~cyMke~g~S~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 526 (567)
.++-|+. ...++|- .+.-+ |.++|+|.++- ..-+..+++.+.+-+....-....+|....
T Consensus 159 ---nilRdv~---eD~~~gR~YlP~d~---l~~~gv~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~~ 229 (265)
T cd00683 159 ---NILRDVG---EDARRGRIYLPREE---LARFGVTLEDLLAPENSPAFRALLRRLIARARAHYREALAGLAALPRRSR 229 (265)
T ss_pred ---HHHHHHH---HHHccCCCcCCHHH---HHHcCCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHhhH
Confidence 2233443 2334553 33332 67889887653 244555666666555544332344775444
Q ss_pred HHHHHHhh
Q 008387 527 LPSLNLAR 534 (567)
Q Consensus 527 ~~~lN~aR 534 (567)
-.++-++.
T Consensus 230 ~~~~~~~~ 237 (265)
T cd00683 230 FCVRAAAM 237 (265)
T ss_pred HHHHHHHH
Confidence 44444433
No 17
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=74.77 E-value=1.1e+02 Score=32.25 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=55.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
.....+.+....++.+-+.+..|... ..+|.++|++.-..=+|..+..++..-++-.. .+++..+. .-++-...+
T Consensus 133 ~~~~~~~~~~~~~~~Gq~~~~~~~~~-~~~~~~~y~~~~~~KTa~L~~~~~~~ga~~ag-~~~~~~~~---l~~~G~~lG 207 (322)
T TIGR02749 133 EVVKLISKVITDFAEGEIKQGLNQFD-SDLSLEDYLEKSFYKTASLVAASSKAAAVLSD-VPSQVAND---LYEYGKHLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHccHHHHHHHHHHHHHHHcC-cCHHHHHH---HHHHHHHHH
Confidence 35667777888888888877776533 34799999997555444443322211111112 45554433 356777888
Q ss_pred HHHHHhcCCcchh
Q 008387 458 LIARLDDDVHTYK 470 (567)
Q Consensus 458 ~i~RL~NDI~S~~ 470 (567)
+..-+.||+..+.
T Consensus 208 ~aFQi~DDild~~ 220 (322)
T TIGR02749 208 LAFQVVDDILDFT 220 (322)
T ss_pred HHHHHHHHhccCC
Confidence 8889999998875
No 18
>PLN02890 geranyl diphosphate synthase
Probab=71.91 E-value=1.1e+02 Score=33.67 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=59.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
..+..+.++...++.+-+.+..|.. ...+|+++|++....-+|.....++..-++--. .+++..+.+ -.+-+..+
T Consensus 227 ~~~~~~s~a~~~l~~Gq~ld~~~~~-~~~~s~~~Yl~~i~~KTa~Lf~~s~~~gAilag-a~~~~~~~l---~~fG~~lG 301 (422)
T PLN02890 227 EVVSLLATAVEHLVTGETMQITSSR-EQRRSMDYYMQKTYYKTASLISNSCKAVAILAG-QTAEVAVLA---FEYGRNLG 301 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHH
Confidence 4677888889999999999998864 456899999987555444433322211111112 355554432 46677788
Q ss_pred HHHHHhcCCcchhhh
Q 008387 458 LIARLDDDVHTYKVE 472 (567)
Q Consensus 458 ~i~RL~NDI~S~~~E 472 (567)
+..-+.||+..|.-.
T Consensus 302 lAFQI~DDiLD~~g~ 316 (422)
T PLN02890 302 LAFQLIDDVLDFTGT 316 (422)
T ss_pred HHHHHHHHHHhhcCC
Confidence 888999999887543
No 19
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=70.64 E-value=48 Score=33.62 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSL 458 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~ 458 (567)
....+.+.....+.+-..+..|... ..||.++|++....-+|.....+....++--. .+++.. ....++-...++
T Consensus 109 ~~~~~~~~~~~~~~GQ~~d~~~~~~-~~~~~~~y~~~~~~KT~~l~~~~~~~~a~l~~-~~~~~~---~~l~~~g~~lG~ 183 (259)
T cd00685 109 ALELFSEAILELVEGQLLDLLSEYD-TDVTEEEYLRIIRLKTAALFAAAPLLGALLAG-ADEEEA---EALKRFGRNLGL 183 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCC-CCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHH---HHHHHHHHHHHH
Confidence 5666777888888888888888654 57999999999877666554433322222111 233332 233567777888
Q ss_pred HHHHhcCCcchhhhhh-----------cCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 459 IARLDDDVHTYKVEQE-----------RGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 459 i~RL~NDI~S~~~E~~-----------rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
..-+.||+..+....+ .|.. |.+.+|.- .+.+...++++++.+..
T Consensus 184 afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~-T~~~~~~l---------~~~~~~~~~~a~~~l~~ 239 (259)
T cd00685 184 AFQIQDDILDLFGDPETLGKPVGSDLREGKC-TLPVLLAL---------RELAREYEEKALEALKA 239 (259)
T ss_pred HHHHHHHhhcccCChHHHCCCcchHHHcCCc-hHHHHHHH---------HHHHHHHHHHHHHHHHc
Confidence 8888999877654321 2222 45444443 56677777777766655
No 20
>PLN02857 octaprenyl-diphosphate synthase
Probab=67.38 E-value=94 Score=34.20 Aligned_cols=89 Identities=11% Similarity=0.081 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
.....+.+...+++.+-+.+..+.. +.-+|.++|++....=+|..+..+...-++--. .+++..+. ..++-+..+
T Consensus 227 ~~~~~~s~~~~~l~~Gei~q~~~~~-~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallag-a~~~~~~~---l~~fG~~LG 301 (416)
T PLN02857 227 EVIKLISQVIKDFASGEIKQASSLF-DCDVTLDEYLLKSYYKTASLIAASTKSAAIFSG-VDSSVKEQ---MYEYGKNLG 301 (416)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhccc-CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 3566677777888888777777754 445799999997665554443322211111112 45554433 356677788
Q ss_pred HHHHHhcCCcchhh
Q 008387 458 LIARLDDDVHTYKV 471 (567)
Q Consensus 458 ~i~RL~NDI~S~~~ 471 (567)
+..-+.||+..+..
T Consensus 302 iAFQI~DDiLD~~~ 315 (416)
T PLN02857 302 LAFQVVDDILDFTQ 315 (416)
T ss_pred HHHHHHHHHHhhcC
Confidence 88899999988753
No 21
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=63.32 E-value=1.5e+02 Score=31.36 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
.....+.+....++.+-+.+..+.... +|.++|+.+-..=+|.....+...-++--. .+++..+. .-.+-+..+
T Consensus 134 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~--~t~e~y~~~i~~KTa~L~~~a~~~ga~la~-~~~~~~~~---l~~~g~~lG 207 (322)
T COG0142 134 EAIKALAEAINGLCGGQALDLAFENKP--VTLEEYLRVIELKTAALFAAAAVLGAILAG-ADEELLEA---LEDYGRNLG 207 (322)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHccCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHhh
Confidence 356778888899999988888886555 999999999666555443333222221111 34444443 356778888
Q ss_pred HHHHHhcCCcchhhhh-hcCCC---------CchhhHHHHhcCCC
Q 008387 458 LIARLDDDVHTYKVEQ-ERGDA---------PSSVECYVQQYGVS 492 (567)
Q Consensus 458 ~i~RL~NDI~S~~~E~-~rG~~---------~n~V~cyMke~g~S 492 (567)
++.-+.|||..+.-+. .-|.. .+...+|.-+.+-.
T Consensus 208 laFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~~~~~ 252 (322)
T COG0142 208 LAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALEKANE 252 (322)
T ss_pred HHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHHcCch
Confidence 8889999998887642 22332 46666676665433
No 22
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=61.20 E-value=2e+02 Score=30.20 Aligned_cols=87 Identities=7% Similarity=0.016 Sum_probs=55.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHhhcchhHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~ 455 (567)
.....+.++....+.+-..+..|.. +.-+|.++|++.-..-+|..+..+ ...|. +. .+++..+. .-++-+.
T Consensus 129 ~~~~~~~~~~~~~~~Gq~~~~~~~~-~~~~~~~~Y~~~i~~KTa~L~~~~-~~~ga~~ag--~~~~~~~~---l~~~g~~ 201 (319)
T TIGR02748 129 RAHQILSHTIVEVCRGEIEQIKDKY-NFDQNLRTYLRRIKRKTALLIAAS-CQLGAIASG--ANEAIVKK---LYWFGYY 201 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 3566777888888888888887743 345799999988666555443322 22221 11 24443332 3456677
Q ss_pred HHHHHHHhcCCcchhh
Q 008387 456 SSLIARLDDDVHTYKV 471 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~~ 471 (567)
.++..-+.||+..+.-
T Consensus 202 lG~aFQI~DDilD~~~ 217 (319)
T TIGR02748 202 VGMSYQITDDILDFVG 217 (319)
T ss_pred HHHHHHHHHHHHHccC
Confidence 8888899999987753
No 23
>PLN02632 phytoene synthase
Probab=60.76 E-value=2.3e+02 Score=30.08 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=93.2
Q ss_pred hHHHhhHHHHHHhhhccccccCCHH----HHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchH
Q 008387 305 RKFMTKIIAIASVIDDIYDVYGTLE----ELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCM 380 (567)
Q Consensus 305 Rl~laK~~~l~~viDD~fD~ygt~e----El~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~ 380 (567)
|..+.-+-.|.-.+||+-|....+. .|+..-+++..- .+.-|. .++..++.++..+.. -..
T Consensus 75 R~ai~alYAf~R~~DdI~D~~~~~~~~~~~L~~w~~~l~~~----~~g~~~--~pv~~aL~~~~~~~~---------L~~ 139 (334)
T PLN02632 75 RKAIWAIYVWCRRTDELVDGPNASHITPAALDRWEARLEDL----FDGRPY--DMLDAALADTVSKFP---------LDI 139 (334)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCChhhHHHHHHHHHHHHHH----hCCCCC--ChHHHHHHHHHHHCC---------CCh
Confidence 4444456677778899999654322 233333333221 111122 245667766655432 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCc-ccc-HHHHHhhcchhHHHHHHHH
Q 008387 381 YYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDM-AIT-KRALDWAISVPKIIRSSSL 458 (567)
Q Consensus 381 ~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~-~l~-~e~~e~~~~~p~i~~~~~~ 458 (567)
+.+.+++.++.... .....+|++|+......+.|.-..+++..++.... ..+ +++... ....+.
T Consensus 140 ----~~~~~li~g~~~Dl---~~~~~~t~~eL~~Ycy~vAgtVG~l~l~vlg~~~~~~~~~~~~~~~-------A~~lG~ 205 (334)
T PLN02632 140 ----QPFRDMIEGMRMDL---VKSRYENFDELYLYCYYVAGTVGLMSVPVMGIAPESKASTESVYNA-------ALALGI 205 (334)
T ss_pred ----HHHHHHHHHHHHHh---ccCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCCccccchHHHHHH-------HHHHHH
Confidence 33466677765332 23457899999988888777666666555544221 011 111211 112222
Q ss_pred HHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 008387 459 IARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 526 (567)
Q Consensus 459 i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 526 (567)
..-|.|=+.......++|-+ +-- -|.++|+|.++- ..-+..+++.+..-+.+..---..+|..+.
T Consensus 206 AlQltNILRDv~eD~~~GRvYLP~e---~L~~~Gv~~edl~~~~~~~~~~~l~~~~~~~Ar~~~~~a~~~l~~lp~~~r 281 (334)
T PLN02632 206 ANQLTNILRDVGEDARRGRVYLPQD---ELAQFGLTDEDIFAGKVTDKWRAFMKFQIKRARMYFAEAEEGVSELDPASR 281 (334)
T ss_pred HHHHHHHHHHHHHHHhCCceeCCHH---HHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhHhhCCHHhH
Confidence 22222222222334456653 222 367899998872 334555555555444443221234665544
No 24
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=56.44 E-value=9.2 Score=36.24 Aligned_cols=30 Identities=23% Similarity=0.437 Sum_probs=26.1
Q ss_pred hhcCCCCchhhHHHHhc-CCCHHHHHHHHHH
Q 008387 473 QERGDAPSSVECYVQQY-GVSEEEACNKIKG 502 (567)
Q Consensus 473 ~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~ 502 (567)
-.||-.+..|.||+-++ |.|.++|.+++++
T Consensus 118 AGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~ 148 (183)
T KOG1719|consen 118 AGRTRSATVVACYLMQHKNWTPEAAVEHVRK 148 (183)
T ss_pred CCCccchhhhhhhhhhhcCCCHHHHHHHHHh
Confidence 35677789999998885 9999999999998
No 25
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=52.22 E-value=12 Score=36.58 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=31.3
Q ss_pred HHhcCCcchhhhhhcCC-CCchhhHHHHhcCCCHHHHHHHHHHHHH
Q 008387 461 RLDDDVHTYKVEQERGD-APSSVECYVQQYGVSEEEACNKIKGMVE 505 (567)
Q Consensus 461 RL~NDI~S~~~E~~rG~-~~n~V~cyMke~g~S~EeA~~~i~~~i~ 505 (567)
.|--++..+++..+.-. +.-+=.+.|+++|+|++||+++++++--
T Consensus 129 ~L~~el~~~k~~L~~rK~ierAKglLM~~~g~sE~EAy~~lR~~AM 174 (194)
T COG3707 129 ALRRELAKLKDRLEERKVIERAKGLLMKRRGLSEEEAYKLLRRTAM 174 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45556666666543332 3344446899999999999999998643
No 26
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=50.37 E-value=16 Score=28.19 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred CCchhhHHHHhcCCCHHHHHHHHHHHHH
Q 008387 478 APSSVECYVQQYGVSEEEACNKIKGMVE 505 (567)
Q Consensus 478 ~~n~V~cyMke~g~S~EeA~~~i~~~i~ 505 (567)
+.-++.+.|..+|+|+++|.+.+++.-.
T Consensus 15 I~~AkgiLm~~~g~~e~~A~~~Lr~~Am 42 (56)
T PF03861_consen 15 IEQAKGILMARYGLSEDEAYRLLRRQAM 42 (56)
T ss_dssp HHHHHHHHHHHHT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3456778999999999999999988654
No 27
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=40.11 E-value=4.7e+02 Score=27.58 Aligned_cols=88 Identities=13% Similarity=-0.032 Sum_probs=56.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc-CCccccHHHHHhhcchhHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m-g~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.....+.++....+.+-..+..|.. +.-+|.++|+.+...=+|.....++ .+|. --. .+++..+ ..-.+-+..
T Consensus 130 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~i~~KTa~lf~~~~-~~ga~lag-~~~~~~~---~l~~~g~~l 203 (323)
T PRK10888 130 KVLEVMSEAVNVIAEGEVLQLMNVN-DPDITEENYMRVIYSKTARLFEAAA-QCSGILAG-CTPEQEK---GLQDYGRYL 203 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHcC-CCHHHHH---HHHHHHHHH
Confidence 3566777888888888888887754 3358999999986665554433222 2221 011 3444332 235677788
Q ss_pred HHHHHHhcCCcchhh
Q 008387 457 SLIARLDDDVHTYKV 471 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~ 471 (567)
++..-+.||+..+..
T Consensus 204 G~aFQi~DD~ld~~~ 218 (323)
T PRK10888 204 GTAFQLIDDLLDYSA 218 (323)
T ss_pred HHHHHHHHHhhcccC
Confidence 888899999988753
No 28
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=32.15 E-value=36 Score=22.92 Aligned_cols=18 Identities=39% Similarity=0.704 Sum_probs=14.5
Q ss_pred HHHHhcCCCHHHHHHHHH
Q 008387 484 CYVQQYGVSEEEACNKIK 501 (567)
Q Consensus 484 cyMke~g~S~EeA~~~i~ 501 (567)
-|.++||+|.||..+.+.
T Consensus 9 rYV~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLA 26 (28)
T ss_pred hhHHhcCCCHHHHHHHHH
Confidence 489999999999766554
No 29
>CHL00151 preA prenyl transferase; Reviewed
Probab=31.46 E-value=6.4e+02 Score=26.52 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHHhhcchhHHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
....+.+....++.+-+.+..|.. ..-+|.++|+.....=+|.....++..-+ ++. .+++..+ ..-++-...+
T Consensus 135 ~~~~~~~~~~~l~~G~~~~~~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~---~l~~~G~~lG 208 (323)
T CHL00151 135 VVKLISKVITDFAEGEIRQGLVQF-DTTLSILNYIEKSFYKTASLIAASCKAAALLSD--ADEKDHN---DFYLYGKHLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCHHHHH---HHHHHHHHHH
Confidence 456677888888888777766643 33479999999744433333332221111 122 3444333 2356777888
Q ss_pred HHHHHhcCCcchhh
Q 008387 458 LIARLDDDVHTYKV 471 (567)
Q Consensus 458 ~i~RL~NDI~S~~~ 471 (567)
+..-+.||+..+.-
T Consensus 209 ~aFQi~DDilD~~~ 222 (323)
T CHL00151 209 LAFQIIDDVLDITS 222 (323)
T ss_pred HHHHHHHHHhhccc
Confidence 88899999988754
No 30
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=29.62 E-value=64 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=24.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 008387 485 YVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQ 524 (567)
Q Consensus 485 yMke~g~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~ 524 (567)
-|++.|.|.. +|++.|++.||. .+.+||+-|+|
T Consensus 126 ~~~~~Gks~~----eIR~~ID~kYk~---g~~~pTpTp~P 158 (158)
T PF13798_consen 126 QMYQEGKSPK----EIRQYIDEKYKE---GYAKPTPTPMP 158 (158)
T ss_pred HHHHcCCCHH----HHHHHHHHHHHh---CCCCCCCCCCC
Confidence 4666777754 489999999974 57788877765
No 31
>PRK10581 geranyltranstransferase; Provisional
Probab=29.27 E-value=5.5e+02 Score=26.79 Aligned_cols=112 Identities=13% Similarity=0.125 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~-~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
..++.+-..+..|.. ..+|.++|+++-. .|+.+ ...+ ...| ++.. -+++..+. ..++-+..++..-+.|
T Consensus 152 ~~l~~GQ~ld~~~~~--~~~~~~~y~~i~~~KTa~L-~~~~-~~~gailag~-~~~~~~~~---l~~~g~~lG~aFQI~D 223 (299)
T PRK10581 152 AGMCGGQALDLEAEG--KQVPLDALERIHRHKTGAL-IRAA-VRLGALSAGD-KGRRALPV---LDRYAESIGLAFQVQD 223 (299)
T ss_pred chhhHhhHHHHhccC--CCCCHHHHHHHHHHhhHHH-HHHH-HHHHHHHcCC-CcHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346666666777743 4689999998755 45544 3222 1222 1211 12333332 3567788888889999
Q ss_pred CCcchhhh-hhcCC-----C----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVE-QERGD-----A----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E-~~rG~-----~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-. ..-|. . .|.+.++ ..|.|.+.+++.++.+.+.+..
T Consensus 224 DilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~------~~e~a~~~a~~~~~~A~~~l~~ 276 (299)
T PRK10581 224 DILDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLDQ 276 (299)
T ss_pred HHccccCChHHHCCCcchhhhcCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99987432 11122 1 2454443 2478888899999988877665
No 32
>smart00463 SMR Small MutS-related domain.
Probab=27.26 E-value=73 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Q 008387 489 YGVSEEEACNKIKGMVEIEWMNIN 512 (567)
Q Consensus 489 ~g~S~EeA~~~i~~~i~~~wk~ln 512 (567)
||++.++|+..+...++++++.-.
T Consensus 7 HG~~~~eA~~~l~~~l~~~~~~~~ 30 (80)
T smart00463 7 HGLTVEEALTALDKFLNNARLKGL 30 (80)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999987643
No 33
>smart00400 ZnF_CHCC zinc finger.
Probab=27.22 E-value=71 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=21.0
Q ss_pred CCCCchhhHHHHhcCCCHHHHHHHH
Q 008387 476 GDAPSSVECYVQQYGVSEEEACNKI 500 (567)
Q Consensus 476 G~~~n~V~cyMke~g~S~EeA~~~i 500 (567)
|.-.+.|..||+-+|+|-.||++.+
T Consensus 30 g~gGd~i~fv~~~~~~sf~eA~~~L 54 (55)
T smart00400 30 GAGGNVISFLMKYDKLSFVEAVKKL 54 (55)
T ss_pred CCCCCHHHHHHHHHCcCHHHHHHHh
Confidence 4445889999999999999999875
No 34
>COG4738 Predicted transcriptional regulator [Transcription]
Probab=26.74 E-value=1.8e+02 Score=26.18 Aligned_cols=84 Identities=24% Similarity=0.247 Sum_probs=46.5
Q ss_pred HHHHHHHHHhCcccCcHHHHHHHHHHHHhhc---CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccc
Q 008387 77 VAIVNQLQRLGVAYHFENEIKEALQTIYDSH---VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGE 153 (567)
Q Consensus 77 l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~---~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~ 153 (567)
-.+|+.|++|||++--. -+|-++-+.- ...|+.. +.--=-.+|++-|.||.+| +|.--.-+| + ++|.
T Consensus 14 ~~~ie~L~~lgi~R~vA----~tlv~L~~~~E~sS~~IE~~---sgLRQPEVSiAMr~Lre~g-WV~~R~eKK-k-GKGR 83 (124)
T COG4738 14 YEIIELLRILGIPRNVA----TTLVCLAKGDEASSREIERV---SGLRQPEVSIAMRYLRENG-WVDEREEKK-K-GKGR 83 (124)
T ss_pred HHHHHHHHHcCCCchHH----HHHHHHhcCcchhhhhhHHh---hcCCCchhHHHHHHHHHcc-ccchHHhcc-c-CCCC
Confidence 57899999999998642 2232222110 0001000 0112347899999999999 666655555 4 3343
Q ss_pred -ccc-ccccchHHHHhHhh
Q 008387 154 -FKA-MLTNDAKGLLCLYE 170 (567)
Q Consensus 154 -F~~-~~~~dv~glL~LYe 170 (567)
.|. .|+.+...+++-++
T Consensus 84 Pik~Y~Lt~~~~eIvs~ie 102 (124)
T COG4738 84 PIKLYRLTVPFDEIVSEIE 102 (124)
T ss_pred CceEEEecCcHHHHHHHHH
Confidence 222 34566666665554
No 35
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=1e+02 Score=31.76 Aligned_cols=64 Identities=27% Similarity=0.341 Sum_probs=49.8
Q ss_pred chhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHH----------HHhhcCCCCCChhHHHHHHHHhh
Q 008387 468 TYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNI----------NEEIQDPNHPPLQWLLPSLNLAR 534 (567)
Q Consensus 468 S~~~E~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~l----------n~e~l~~~~~p~~~~~~~lN~aR 534 (567)
.|++||+ .++.++..+...|.+.++|.++++--+++.+-++ +.+.|.+.++|...+..+.++||
T Consensus 96 ~wk~~qk---a~klle~aaekl~~~~ee~~~~vg~~L~e~fG~~y~aFE~aa~~g~~~l~~~~~~~~~~~~l~e~a~ 169 (269)
T COG1093 96 EWKKEQK---ADKLLELAAEKLGKDLEEAYEEVGWKLEEEFGSLYDAFEAAAKEGGEVLDDEGVPEEWKEVLKEIAR 169 (269)
T ss_pred HHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHhHHHHHHhCCHHHHHHHHHhcCCcccccCCCCHHHHHHHHHHHH
Confidence 4566665 4688888898899999999999988887766433 33455556789999999999998
No 36
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=25.23 E-value=76 Score=26.12 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 489 YGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 489 ~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
||++.+||...+...+.++++.-..
T Consensus 4 HG~~~~eA~~~l~~~l~~~~~~~~~ 28 (83)
T PF01713_consen 4 HGLTVEEALRALEEFLDEARQRGIR 28 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHTTHS
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7999999999999999999976443
No 37
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=23.79 E-value=7.6e+02 Score=24.85 Aligned_cols=97 Identities=14% Similarity=0.196 Sum_probs=56.0
Q ss_pred cCCCCChHHHHhhhccccchhhHHHHHHHhc-CCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhh-hcCCC--
Q 008387 403 AKYVPTFEECVENSTMSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQ-ERGDA-- 478 (567)
Q Consensus 403 ~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m-g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~-~rG~~-- 478 (567)
.+..+|.++|+++-..-+|..+...+..-++ +. .+++..+ ...++-...++..-+.||+..+.... ..|..
T Consensus 129 ~~~~~~~~~y~~i~~~KTg~l~~~~~~~ga~lag--~~~~~~~---~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~ 203 (260)
T PF00348_consen 129 EDKDPTEEEYLEIIRLKTGSLFALACQLGAILAG--ADEEQIE---ALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVG 203 (260)
T ss_dssp TTSSTSHHHHHHHHHHHTHHHHHHHHHHHHHHTT--SGHHHHH---HHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTT
T ss_pred ccccccHHHHHHHHhhcchHHHHHHHHHHHHhcc--chhHHHH---HHHHHHHHHHHHHhhhhhhhhccCcHHHhcccch
Confidence 3348899999999777666654333222221 22 3444433 34667788888889999988877532 12221
Q ss_pred -------CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHH
Q 008387 479 -------PSSVECYVQQYGVSEEEACNKIKGMVEIEWMN 510 (567)
Q Consensus 479 -------~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ 510 (567)
.|...+|.-| .+.+..+.++.+..+.
T Consensus 204 ~Dl~~gk~Tlp~~~al~------~~~~~~~~~l~~~~~~ 236 (260)
T PF00348_consen 204 SDLKEGKPTLPVLHALE------RAREELRELLQEAYGK 236 (260)
T ss_dssp HHHHTTTSSHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred hHHhcCcccHHHHHHHH------hCHHHHHHHHHHHHcc
Confidence 2555555533 3555555555554443
No 38
>KOG3951 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.99 E-value=1.1e+02 Score=31.37 Aligned_cols=56 Identities=27% Similarity=0.339 Sum_probs=40.2
Q ss_pred ccccccccccccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHc
Q 008387 149 DEKGEFKAMLTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSL 212 (567)
Q Consensus 149 d~~G~F~~~~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL 212 (567)
+.+|-|.....-|+||-..|-++-- .... +-|=.|+.||++||. +.+-+++|++-|
T Consensus 264 hp~GAFv~~s~iDmkgcvrllk~q~-p~~~-e~LLnaLRfTTKHlN------desTpK~ir~ll 319 (321)
T KOG3951|consen 264 HPNGAFVSNSSIDMKGCVRLLKLQP-PEQS-ECLLNALRFTTKHLN------DESTPKSIRHLL 319 (321)
T ss_pred cccccccccCcCcHHHHHHHHHcCC-chhh-HHHHHHHHHHHhhcC------CCCChHHHHHHh
Confidence 5778888888899999999988743 2222 357789999999984 334456666655
No 39
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=22.97 E-value=80 Score=28.70 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.9
Q ss_pred hhhHHHHhcCCCHHHHHHHHHH
Q 008387 481 SVECYVQQYGVSEEEACNKIKG 502 (567)
Q Consensus 481 ~V~cyMke~g~S~EeA~~~i~~ 502 (567)
=|.+.|.|.|+|.++|++.+..
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e 108 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEE 108 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHH
Confidence 3789999999999999987754
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=21.80 E-value=79 Score=31.56 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=22.1
Q ss_pred CCCCchhhHHH-HhcCCCHHHHHHHHHH
Q 008387 476 GDAPSSVECYV-QQYGVSEEEACNKIKG 502 (567)
Q Consensus 476 G~~~n~V~cyM-ke~g~S~EeA~~~i~~ 502 (567)
|-....|.||| +++|+|..||++.++.
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIAWLRI 186 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 44568899986 5689999999998876
No 41
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.05 E-value=71 Score=23.90 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=15.2
Q ss_pred HHHHhhcCceeehhhhcccc
Q 008387 129 FRLLRQHGYKVSADIFKKFR 148 (567)
Q Consensus 129 FRlLR~hGy~vS~dvf~~F~ 148 (567)
+.-|+++||++|+++++.+.
T Consensus 25 l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 25 LDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHHHHHcCcccCHHHHHHHH
Confidence 44457889999999887664
Done!