Query 008387
Match_columns 567
No_of_seqs 230 out of 906
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 01:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 6E-169 2E-173 1383.1 53.3 538 13-567 15-554 (554)
2 3m00_A Aristolochene synthase; 100.0 1E-167 4E-172 1371.7 52.8 534 16-567 13-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 1E-166 4E-171 1366.9 48.5 537 18-566 13-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 3E-162 9E-167 1338.6 52.6 539 19-566 1-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 8E-162 3E-166 1334.5 46.2 539 18-566 4-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 9E-161 3E-165 1329.5 43.4 534 16-566 31-569 (569)
7 3sdr_A Alpha-bisabolene syntha 100.0 9E-145 3E-149 1238.6 45.9 492 72-567 297-817 (817)
8 3p5p_A Taxadiene synthase; cla 100.0 3E-144 1E-148 1227.0 49.2 490 72-567 245-756 (764)
9 3s9v_A Abietadiene synthase, c 100.0 3E-144 1E-148 1229.7 47.3 490 72-566 269-785 (785)
10 3pya_A ENT-copalyl diphosphate 100.0 4E-108 2E-112 922.1 36.9 454 49-566 220-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 1.9E-51 6.5E-56 429.1 19.6 251 255-515 15-270 (337)
12 1di1_A Aristolochene synthase; 100.0 2E-49 6.8E-54 406.9 21.1 242 257-515 13-264 (300)
13 3bny_A Aristolochene synthase; 100.0 5.5E-48 1.9E-52 400.2 21.3 245 254-515 24-278 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 2.4E-46 8.1E-51 398.3 21.2 242 265-514 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 5.4E-33 1.8E-37 299.1 20.2 245 261-515 130-390 (433)
16 1yyq_A Trichodiene synthase; t 99.8 2.9E-18 1E-22 181.1 14.6 225 264-513 34-275 (374)
17 3sdr_A Alpha-bisabolene syntha 97.3 8.3E-05 2.8E-09 85.5 2.6 48 16-64 21-68 (817)
18 3acx_A Dehydrosqualene synthas 87.5 24 0.00082 35.1 19.0 193 303-526 38-244 (293)
19 3lmd_A Geranylgeranyl pyrophos 82.1 9.4 0.00032 39.6 11.7 85 379-471 161-247 (360)
20 4hd1_A Squalene synthase HPNC; 80.3 49 0.0017 32.9 19.0 186 305-526 41-239 (294)
21 3ipi_A Geranyltranstransferase 79.0 12 0.00041 37.6 11.0 141 379-535 128-278 (295)
22 3oyr_A Trans-isoprenyl diphosp 72.2 58 0.002 33.3 14.2 87 378-471 151-239 (345)
23 2ftz_A Geranyltranstransferase 72.2 35 0.0012 34.0 12.2 120 379-513 135-264 (284)
24 3mzv_A Decaprenyl diphosphate 72.0 81 0.0028 32.1 15.3 87 378-471 139-227 (341)
25 3ts7_A Geranyltranstransferase 70.2 36 0.0012 34.6 12.0 111 388-513 158-282 (324)
26 1rtr_A Geranyltranstransferase 69.9 21 0.00071 35.9 10.1 112 388-513 148-271 (301)
27 3rmg_A Octaprenyl-diphosphate 69.4 36 0.0012 34.7 11.9 88 378-471 133-221 (334)
28 3m0g_A Farnesyl diphosphate sy 68.7 25 0.00086 35.3 10.3 111 388-513 147-269 (297)
29 1wy0_A Geranylgeranyl pyrophos 65.3 48 0.0016 33.7 11.9 86 379-471 138-225 (342)
30 3p8r_A Geranyltranstransferase 64.3 26 0.00088 35.3 9.4 112 388-513 158-282 (302)
31 3lsn_A Geranyltranstransferase 63.3 46 0.0016 33.4 11.1 110 390-513 154-276 (304)
32 2h8o_A Geranyltranstransferase 62.5 43 0.0015 34.2 10.8 112 388-513 192-315 (335)
33 3p8l_A Geranyltranstransferase 62.0 41 0.0014 33.8 10.4 109 389-513 157-279 (302)
34 3pko_A Geranylgeranyl pyrophos 59.8 99 0.0034 31.3 13.0 102 379-488 144-258 (334)
35 4f62_A Geranyltranstransferase 58.6 54 0.0019 33.2 10.7 111 389-513 152-275 (317)
36 3apz_A Geranyl diphosphate syn 54.0 74 0.0025 32.4 10.9 87 378-471 153-241 (348)
37 4dhd_A Polyprenyl synthetase; 52.0 69 0.0024 32.9 10.3 86 379-470 133-231 (358)
38 1wmw_A Geranylgeranyl diphosph 48.3 1.8E+02 0.0061 29.2 12.7 84 379-470 131-218 (330)
39 1pd3_A Nonstructural protein N 48.3 14 0.00049 27.3 3.0 33 50-86 16-48 (58)
40 1rqj_A Geranyltranstransferase 46.2 1E+02 0.0035 30.7 10.3 113 388-513 152-276 (299)
41 3uca_A Geranyltranstransferase 46.1 87 0.003 31.7 9.8 112 388-513 180-304 (324)
42 3lom_A Geranyltranstransferase 45.4 1.3E+02 0.0046 30.2 11.0 113 389-513 159-283 (313)
43 2j1p_A Geranylgeranyl pyrophos 45.3 33 0.0011 34.3 6.4 108 389-513 161-272 (293)
44 3npk_A Geranyltranstransferase 45.0 1.3E+02 0.0044 29.9 10.8 113 387-513 144-266 (291)
45 3pde_A Farnesyl-diphosphate sy 44.1 79 0.0027 31.8 9.1 110 389-513 156-278 (309)
46 3llw_A Geranyltranstransferase 42.2 58 0.002 32.8 7.8 112 388-513 159-281 (311)
47 3nf2_A Putative polyprenyl syn 41.5 1.2E+02 0.0041 31.0 10.1 85 379-470 144-230 (352)
48 3vj8_A Squalene synthase; farn 36.1 3.5E+02 0.012 27.3 17.2 224 304-547 38-284 (343)
49 3tc1_A Octaprenyl pyrophosphat 33.1 3.7E+02 0.013 26.8 12.1 83 378-470 122-206 (315)
50 3s9v_A Abietadiene synthase, c 32.6 16 0.00054 41.8 1.9 41 24-64 5-45 (785)
51 1uby_A FPS, farnesyl diphospha 31.0 2.6E+02 0.0088 28.6 10.7 88 379-471 170-264 (367)
52 2e8v_A Geranylgeranyl pyrophos 29.1 93 0.0032 31.6 6.8 87 379-471 132-221 (340)
53 2q80_A Geranylgeranyl pyrophos 27.9 2.3E+02 0.0078 28.1 9.4 84 378-470 111-195 (301)
54 1c07_A Protein (epidermal grow 26.5 1.8E+02 0.0061 23.0 6.9 61 72-142 25-86 (95)
55 3kra_B Geranyl diphosphate syn 25.6 69 0.0024 31.6 4.9 92 390-513 151-245 (274)
56 3aqb_B Component B of hexapren 25.3 1.5E+02 0.0052 29.7 7.6 89 378-471 130-218 (325)
57 1yhl_A Farnesyl pyrophosphate 23.1 2.6E+02 0.009 28.3 9.0 88 379-471 152-257 (362)
58 3fau_A NEDD4-binding protein 2 21.8 69 0.0024 25.3 3.4 23 489-511 6-28 (82)
59 1qjt_A EH1, epidermal growth f 20.2 1.2E+02 0.0042 24.5 4.7 63 73-145 27-89 (99)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=6e-169 Score=1383.06 Aligned_cols=538 Identities=48% Similarity=0.868 Sum_probs=498.6
Q ss_pred cccccccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccC
Q 008387 13 STKADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYH 91 (567)
Q Consensus 13 ~~~~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~~~~~l~lID~lqrLGi~~h 91 (567)
+++.++.||+||||||+|||+||++ ++ ++..+.+.+|+++||++||+||.. .+ |++++|+|||+||||||+||
T Consensus 15 ~~~~~~~R~~~~~~ps~W~~~fl~~-~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~l~lID~lqrLGi~~h 88 (554)
T 3g4d_A 15 SSNKDEMRPKADFQPSIWGDLFLNC-PD-KNIDAETEKRHQQLKEEVRKMIVAPMA----NSTQKLAFIDSVQRLGVSYH 88 (554)
T ss_dssp ----------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCS----SHHHHHHHHHHHHHTTCGGG
T ss_pred hccCCCCCCCCCCCccccccccccC-CC-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhh
Confidence 3445568999999999999999997 43 344577899999999999999975 46 89999999999999999999
Q ss_pred cHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhh
Q 008387 92 FENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEA 171 (567)
Q Consensus 92 Fe~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeA 171 (567)
|++||+++|++||++ + ... ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||
T Consensus 89 F~~EI~~~L~~i~~~---~--~~~---~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeA 160 (554)
T 3g4d_A 89 FTKEIEDELENIYHN---N--NDA---ENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQA 160 (554)
T ss_dssp CHHHHHHHHHHHHHS---C--CCT---TCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc---c--CCC---CCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHH
Confidence 999999999999975 1 111 47999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhch
Q 008387 172 SYLRVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDF 251 (567)
Q Consensus 172 s~l~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldF 251 (567)
||+++|||+|||||++||++||++.+.+++++|+++|+|||++|||+++||+|||+||++|+++ +++|++|||||||||
T Consensus 161 s~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldF 239 (554)
T 3g4d_A 161 SYLRVHGEDILDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI-ESHNKALLEFAKIDF 239 (554)
T ss_dssp HTTCCTTCHHHHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS-TTCCHHHHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC-ccccHHHHHHHHHHH
Confidence 9999999999999999999999999888888999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHH
Q 008387 252 NLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEEL 331 (567)
Q Consensus 252 n~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl 331 (567)
|+||++||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||
T Consensus 240 n~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl 319 (554)
T 3g4d_A 240 NMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEEL 319 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 008387 332 KLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFE 410 (567)
Q Consensus 332 ~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTle 410 (567)
++||+||+|||++++++||+|||+||.+|+++++|+++++.+ |++ ++++|++++|+++++||++||+|+++||+||+|
T Consensus 320 ~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~E 398 (554)
T 3g4d_A 320 IPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQ-YRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFE 398 (554)
T ss_dssp HHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCT-HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 999999999999999999999999999999999999999988 888 899999999999999999999999999999999
Q ss_pred HHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcC
Q 008387 411 ECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 490 (567)
Q Consensus 411 EYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g 490 (567)
|||+||++|+|++++++++++|||+. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|
T Consensus 399 EYl~na~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~G 477 (554)
T 3g4d_A 399 EFKANALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYG 477 (554)
T ss_dssp HHHHHHGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHT
T ss_pred HHHhccceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008387 491 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 567 (567)
Q Consensus 491 ~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~~ 567 (567)
+|+|+|+++++++|+++||+||++|++++++|+||+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 478 vSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 478 VTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999999988999999999999999999999999999999878999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=1.2e-167 Score=1371.70 Aligned_cols=534 Identities=43% Similarity=0.824 Sum_probs=509.0
Q ss_pred ccccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhc-cccCccCHHHHHHHHHHHHHhCcccCcHH
Q 008387 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVS-NNTAWKTLEEIVAIVNQLQRLGVAYHFEN 94 (567)
Q Consensus 16 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~~~~~~~~l~lID~lqrLGi~~hFe~ 94 (567)
.++.||+||||||+|||+||++.+. ++..+.+.+|+++||++||+||.. .+ +++++|+|||+||||||+|||++
T Consensus 13 ~~~~R~~~~~~ps~W~d~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~----~~~~~L~lID~lqrLGi~~hF~~ 87 (550)
T 3m00_A 13 EEIVRPVADFSPSLWGDQFLSFSIK-NQVAEKYAKEIEALKEQTRNMLLATGM----KLADTLNLIDTIERLGISYHFEK 87 (550)
T ss_dssp ---CCCCCCCCCCTTTTTTSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHTTCGGGCHH
T ss_pred cccCCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHHcCchhhhHH
Confidence 3458999999999999999997543 344567899999999999999975 45 89999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccC
Q 008387 95 EIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYL 174 (567)
Q Consensus 95 EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeAs~l 174 (567)
||+++|++||++|. . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+
T Consensus 88 EI~~~L~~i~~~~~------~---~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeAs~l 158 (550)
T 3m00_A 88 EIDDILDQIYNQNS------N---CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHV 158 (550)
T ss_dssp HHHHHHHHHHHHCC------C---CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcc------c---CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHHHhc
Confidence 99999999999861 1 46999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHccCCccCCcchHHHhhhHH-hhhcCCccccHHHHHHHhhchHH
Q 008387 175 RVQGENILEEACEFSRKHLKSLLSHLSTPLVDQVEHSLEIPLHRGMPRLEARQYIS-IYEADNSTRNELILELAKLDFNL 253 (567)
Q Consensus 175 ~~~gE~iLdea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~y~~~~~~~n~~lLelAkldFn~ 253 (567)
++|||+|||||++||++||++.+++++++|+++|+|||++|||+++||+|||+||+ +|+++ +++|++||||||||||+
T Consensus 159 ~~~gE~iLdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~-~~~n~~lLelAkldFn~ 237 (550)
T 3m00_A 159 RTHADDILEDALAFSTIHLESAAPHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKE-QSKNNVLLRFAKLDFNL 237 (550)
T ss_dssp CCTTCGGGTTHHHHHHHHHHHHGGGCCTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGC-TTCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHhCCCccCCchHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHH
Confidence 99999999999999999999998888888999999999999999999999999999 99999 99999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHH
Q 008387 254 LQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKL 333 (567)
Q Consensus 254 ~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ 333 (567)
||++||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+|||++
T Consensus 238 ~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ 317 (550)
T 3m00_A 238 LQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEA 317 (550)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHH
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHH
Q 008387 334 FTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEEC 412 (567)
Q Consensus 334 ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEY 412 (567)
||+||+|||++++++||+|||+||.+|+++++|+++++.+ |++ ++++|++++|+++++||++||+|+++||+||+|||
T Consensus 318 ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~-~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEY 396 (550)
T 3m00_A 318 YTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRS-HIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEY 396 (550)
T ss_dssp HHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 9999999999999999999999999999999999999888 888 89999999999999999999999999999999999
Q ss_pred HhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCC
Q 008387 413 VENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVS 492 (567)
Q Consensus 413 l~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S 492 (567)
|+||++|+|++++++++++|| +. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|
T Consensus 397 l~na~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvS 474 (550)
T 3m00_A 397 LSNALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGIS 474 (550)
T ss_dssp HHHHTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCC
T ss_pred HHhccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCC
Confidence 999999999999999999988 77 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCCC
Q 008387 493 EEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLPM 567 (567)
Q Consensus 493 ~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~I~~ll~~pi~~ 567 (567)
+|+|+++++++|+++||+||++|++++++|+||+++++|+||++++||++| ||||.|+..||++|++||++|||+
T Consensus 475 eEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 475 TKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999988999999999999999999999998 999999778999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=1.1e-166 Score=1366.93 Aligned_cols=537 Identities=37% Similarity=0.659 Sum_probs=503.2
Q ss_pred ccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 008387 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (567)
Q Consensus 18 ~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~ 97 (567)
..||+||||||+|||+||++.++ ++..+.+.+|+++||++||+||...++ +++++|+|||+||||||+|||++||+
T Consensus 13 ~~~~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~e~Lk~eVr~~l~~~~~---~~~~~L~lID~lqRLGi~~hF~~EI~ 88 (555)
T 3n0f_A 13 EARRSADYEPNSWDYDFLLSSDT-DESIEVYKDKAKKLEAEVRREINNEKA---EFLTLLELIDNVQRLGLGYRFESDIR 88 (555)
T ss_dssp ----CCCCCCCTTCHHHHTCC------CHHHHHHHHHHHHHHHHHHHCTTS---CHHHHHHHHHHHHHTTCGGGSHHHHH
T ss_pred ccCCCCCCCcccccccccccCCc-chhhHHHHHHHHHHHHHHHHHHHhccc---CHHHHHHHHHHHHHcCchhhhHHHHH
Confidence 36999999999999999997543 344578899999999999999974321 68999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCC
Q 008387 98 EALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQ 177 (567)
Q Consensus 98 ~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeAs~l~~~ 177 (567)
++|++||+. .+++++ . ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||++|
T Consensus 89 ~~L~~i~~~-~~~~~~-~---~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G~F~~~l~~dv~glL~LYeAs~l~~~ 163 (555)
T 3n0f_A 89 RALDRFVSS-GGFDGV-T---KTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALE 163 (555)
T ss_dssp HHHHHHHHT-CHHHHH-T---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHhh-cccccc-c---cCCHHHHHHHHHHHHhcCCCcChHHHhcccccCccchhhhhhhhHHHHHHHHHHhcccC
Confidence 999999973 000111 1 46999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhHhh-cCCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchHHHHH
Q 008387 178 GENILEEACEFSRKHLKSLLS-HLSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (567)
Q Consensus 178 gE~iLdea~~ft~~~L~~~~~-~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldFn~~Q~ 256 (567)
||+|||||++||++||++.+. .++++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 164 gE~iLdeA~~Fs~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~Rlear~yI~~Y~~~-~~~n~~lLelAKlDFN~~Q~ 242 (555)
T 3n0f_A 164 GENILDEARVFAISHLKELSEEKIGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKK-EDANQVLLELAILDYNMIQS 242 (555)
T ss_dssp TCHHHHHHHHHHHHHHHTCCHHHHCHHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHhcCCcccCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999775 5678899999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHH
Q 008387 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (567)
Q Consensus 257 ~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (567)
+||+||++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+
T Consensus 243 ~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ 322 (555)
T 3n0f_A 243 VYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTD 322 (555)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhh
Q 008387 337 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 415 (567)
Q Consensus 337 ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~ 415 (567)
||+|||++++++||+|||+||.+|+++++|++.++.+ ++. ++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus 323 ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~-~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n 401 (555)
T 3n0f_A 323 AVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGE-NILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGN 401 (555)
T ss_dssp HHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHh
Confidence 9999999999999999999999999999999999888 777 89999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCCHHH
Q 008387 416 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 495 (567)
Q Consensus 416 ~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S~Ee 495 (567)
|++|+|+++++++++++||+. +|+++++|+.++|+|+++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+
T Consensus 402 a~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEe 480 (555)
T 3n0f_A 402 AWKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL 480 (555)
T ss_dssp HHHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH
T ss_pred cccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008387 496 ACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 566 (567)
Q Consensus 496 A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~ 566 (567)
|+++++++|+++||+||++|++++++|+||+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 481 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 481 ATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC---CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999998899999999999999999999999999999977899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=2.6e-162 Score=1338.64 Aligned_cols=539 Identities=37% Similarity=0.641 Sum_probs=515.8
Q ss_pred cCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHHH
Q 008387 19 NRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKE 98 (567)
Q Consensus 19 ~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~ 98 (567)
.||++|||||+|||+||++.+. ++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++||++
T Consensus 1 ~r~~~~~~ps~W~~~fl~~~~~-~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~liD~lqrLGi~~hF~~EI~~ 75 (543)
T 2ong_A 1 MRRSGNYNPSRWDVNFIQSLLS-DYKEDKHVIRASELVTLVKMELEKET----DQIRQLELIDDLQRMGLSDHFQNEFKE 75 (543)
T ss_dssp CCCCCCCCCCSSCHHHHHHCCC-SSCSTHHHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHTTGGGTTHHHHHH
T ss_pred CCCCCCCCCCcCCcccccCCCc-hhhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHHHHHHHhCCchhhhHHHHHH
Confidence 3899999999999999986433 34445789999999999999998776 899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhccccccccccccccccchHHHHhHhhhccCCCCC
Q 008387 99 ALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAMLTNDAKGLLCLYEASYLRVQG 178 (567)
Q Consensus 99 ~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~~~~dv~glL~LYeAs~l~~~g 178 (567)
+|++||++|..+++|+... ..||++|||+|||||||||+||||||++|||++|+|++++++||+|||||||||||++||
T Consensus 76 ~L~~i~~~~~~~~~~~~~~-~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~~g~F~~~l~~d~~glL~Ly~As~l~~~g 154 (543)
T 2ong_A 76 ILSSIYLDHHYYKNPFPKE-ERDLYSTSLAFRLLREHGFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEG 154 (543)
T ss_dssp HHHHHHHTTTCCCSSCCCC-CCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCTTGGGCHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHhhcccccccccc-cCCHHHHHHHHHHHHHcCCCccHHHHhcccCCCCCccchhhhccHHHHHHHHHHHcCCCC
Confidence 9999999984444442211 369999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhHhhc-C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchHHHHH
Q 008387 179 ENILEEACEFSRKHLKSLLSH-L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFNLLQA 256 (567)
Q Consensus 179 E~iLdea~~ft~~~L~~~~~~-~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldFn~~Q~ 256 (567)
|+|||||++||++||++++.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||+||+
T Consensus 155 E~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn~~Q~ 233 (543)
T 2ong_A 155 ETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKR-PDMNPVVLELAILDLNIVQA 233 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHHHHHHHTC-SSCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHHHHHhccC-ccccHHHHHHHHHhHHHHHH
Confidence 999999999999999999886 5 78999999999999999999999999999999999 99999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHH
Q 008387 257 LHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTH 336 (567)
Q Consensus 257 ~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ 336 (567)
+||+||++++|||+++||.+++||||||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++.||+
T Consensus 234 ~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ 313 (543)
T 2ong_A 234 QFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTD 313 (543)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhh
Q 008387 337 AIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVEN 415 (567)
Q Consensus 337 ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~ 415 (567)
||+|||+++++++|+|||+||.++++++++++.++.+ +++ ++++|++++|++++++|++||+|+++||+||+||||+|
T Consensus 314 ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~ 392 (543)
T 2ong_A 314 LIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGV-NVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLEN 392 (543)
T ss_dssp HHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhc
Confidence 9999999999999999999999999999999999988 777 89999999999999999999999999999999999999
Q ss_pred hccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCCHHH
Q 008387 416 STMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEE 495 (567)
Q Consensus 416 ~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S~Ee 495 (567)
|.+|+|+++++++++++||.. +|+++++|+.++|+++++++.|+||+|||+||++|++||+++|+|+|||+|+|+|+|+
T Consensus 393 ~~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee 471 (543)
T 2ong_A 393 SWQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471 (543)
T ss_dssp HHHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH
T ss_pred ccccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008387 496 ACNKIKGMVEIEWMNINEEI-QDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 566 (567)
Q Consensus 496 A~~~i~~~i~~~wk~ln~e~-l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~ 566 (567)
|+++++++|+++||+||++| ++++++|++|+++++|+||+++++|+++||||.|++.||++|++||++|||
T Consensus 472 A~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 472 ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSCSTTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCCCCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999 998899999999999999999999999999999977899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=7.6e-162 Score=1334.45 Aligned_cols=539 Identities=38% Similarity=0.683 Sum_probs=490.1
Q ss_pred ccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHHHH
Q 008387 18 VNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENEIK 97 (567)
Q Consensus 18 ~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~ 97 (567)
+.||++|||||+|||+||+ ++++++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++||+
T Consensus 4 ~~r~~~~~~ps~W~~~fl~-s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~----d~~~~l~lvD~lqrLGi~~hF~~EI~ 78 (549)
T 1n1b_A 4 QIRRSGNYQPALWDSNYIQ-SLNTPYTEERHLDRKAELIVQVRILLKEKM----EPVQQLELIHDLKYLGLSDFFQDEIK 78 (549)
T ss_dssp -----------CCCHHHHH-HCCCSTTSHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred cCCCCCCCCCCCCCCCccc-CCCcchhhhHHHHHHHHHHHHHHHHHhccc----CHHHHHHhHHHHHhCCchhhhHHHHH
Confidence 4699999999999999995 454444456789999999999999998776 89999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccccc-ccccccccchHHHHhHhhhccCCC
Q 008387 98 EALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASYLRV 176 (567)
Q Consensus 98 ~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G-~F~~~~~~dv~glL~LYeAs~l~~ 176 (567)
++|++||++|..+ +.......|||+|||+|||||||||+||||||++|||++| +|++++++||+||||||||||+++
T Consensus 79 ~~L~~i~~~~~~~--~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~~g~~F~~~l~~d~~glL~LY~As~l~~ 156 (549)
T 1n1b_A 79 EILGVIYNEHKCF--HNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLR 156 (549)
T ss_dssp HHHHHHHHHCHHH--HHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSSBCGGGGGCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhhccc--cccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCCCCCccchhhhhccHHHHHHHHHHhcCC
Confidence 9999999876110 0000014699999999999999999999999999999999 999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHhHhhc---C-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchH
Q 008387 177 QGENILEEACEFSRKHLKSLLSH---L-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (567)
Q Consensus 177 ~gE~iLdea~~ft~~~L~~~~~~---~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldFn 252 (567)
|||+|||||++||++||++.+.+ + +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 157 ~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 235 (549)
T 1n1b_A 157 KGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARR-PDMNPLIFELAKLNFN 235 (549)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSHHHHHHHHHHC-TTCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHHHHHHHHhccc-ccccHHHHHHHHHhHH
Confidence 99999999999999999999885 5 78899999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHH
Q 008387 253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK 332 (567)
Q Consensus 253 ~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~ 332 (567)
+||++||+||++++|||+++||.+++||+|||+++||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++
T Consensus 236 ~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~ 315 (549)
T 1n1b_A 236 IIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELE 315 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008387 333 LFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 411 (567)
Q Consensus 333 ~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleE 411 (567)
.||+||+|||+++++++|+|||+||.++++++++++.++.+ +++ ++++|++++|++++++|++||+|+++||+||+||
T Consensus 316 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 394 (549)
T 1n1b_A 316 LFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGF-FCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDE 394 (549)
T ss_dssp HHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999988 777 8999999999999999999999999999999999
Q ss_pred HHhhhccccchhhHHHHHHHhcCCccccHHH-HHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcC
Q 008387 412 CVENSTMSSGYPMLAVEALVGLEDMAITKRA-LDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYG 490 (567)
Q Consensus 412 Yl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~-~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g 490 (567)
||++|.+|+|+++++++++++||.. +|+++ ++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|
T Consensus 395 Yl~~~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g 473 (549)
T 1n1b_A 395 YLNIAKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETN 473 (549)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHC
T ss_pred HHHhcccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcC
Confidence 9999999999999999999999999 99999 999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCC
Q 008387 491 VSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLP 566 (567)
Q Consensus 491 ~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~ 566 (567)
+|+|||+++++++|+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||
T Consensus 474 ~s~eeA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 474 ASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTSCCC----CHHHHHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCCCCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999987899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=9.5e-161 Score=1329.54 Aligned_cols=534 Identities=37% Similarity=0.628 Sum_probs=468.7
Q ss_pred ccccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHhCcccCcHHH
Q 008387 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRLGVAYHFENE 95 (567)
Q Consensus 16 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrLGi~~hFe~E 95 (567)
.+..||++|||||+|||+||++.+ +++..+.+.+++++||++||+|+.+.. |++++|+|||+||||||+|||++|
T Consensus 31 ~~~~r~~~~~~ps~W~~~fl~~~~-~~~~~~~~~~~~~~Lk~~Vr~~~~~~~----d~~~~l~lID~lqrLGi~~hFe~E 105 (569)
T 2j5c_A 31 KDRWIRTGGYQPTLWDFSTIQSFD-SEYKEEKHLMRAAGMIDQVKMMLQEEV----DSIRRLELIDDLRRLGISCHFERE 105 (569)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHTCGGGGHHH
T ss_pred ccccCCCCCCCCCcCCcccccCCC-chhhhHHHHHHHHHHHHHHHHHHhccc----cHHHHHHHHHHHHhCCchhhhHHH
Confidence 345799999999999999998643 334445788999999999999998776 899999999999999999999999
Q ss_pred HHHHHHHHH-hhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccccc-ccccccccchHHHHhHhhhcc
Q 008387 96 IKEALQTIY-DSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDEKG-EFKAMLTNDAKGLLCLYEASY 173 (567)
Q Consensus 96 I~~~L~~i~-~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~~G-~F~~~~~~dv~glL~LYeAs~ 173 (567)
|+++|++|| +++.. . ..||++|||+|||||||||+||||||++|||++| +|++++++||+||||||||||
T Consensus 106 I~~~L~~i~~~~~~~-----~---~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~~l~~dv~glL~LY~As~ 177 (569)
T 2j5c_A 106 IVEILNSKYYTNNEI-----D---ERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASF 177 (569)
T ss_dssp HHHHHHHHTTSSCCS-----C---TTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCGGGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCc-----c---cCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCccccchhhccHHHHHHHHHHh
Confidence 999999999 76310 1 5799999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHhHhhcC-CCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCccccHHHHHHHhhchH
Q 008387 174 LRVQGENILEEACEFSRKHLKSLLSHL-STPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNSTRNELILELAKLDFN 252 (567)
Q Consensus 174 l~~~gE~iLdea~~ft~~~L~~~~~~~-~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~~n~~lLelAkldFn 252 (567)
|++|||+|||||++||++||++++.++ +++|+++|+|||++|||+++||||||+||++|+++ +++|++||||||||||
T Consensus 178 l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~-~~~n~~lLelAkldFn 256 (569)
T 2j5c_A 178 LSAQGEETLRLARDFATKFLQKRVLVDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKRR-PDMNPTVLELAKLDFN 256 (569)
T ss_dssp TCCTTCHHHHHHHHHHHHTTSSCC----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhccC-ccccHHHHHHHHHhHH
Confidence 999999999999999999999998877 78999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHH
Q 008387 253 LLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELK 332 (567)
Q Consensus 253 ~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~ 332 (567)
+||++||+||++++|||+++||.+++||||||++|||||++|++|||++|.+|+++||+++|+|++||+||+|||++|++
T Consensus 257 ~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~ 336 (569)
T 2j5c_A 257 MVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQ 336 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 99999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008387 333 LFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 411 (567)
Q Consensus 333 ~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleE 411 (567)
.||+||+|||+++++++|+|||+||.++++++++++.++.+ +++ ++++|++++|++++++|++||+|+++||+||+||
T Consensus 337 ~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~-~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eE 415 (569)
T 2j5c_A 337 LFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGF-DSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEE 415 (569)
T ss_dssp HHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999999999988 777 8999999999999999999999999999999999
Q ss_pred HHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCC
Q 008387 412 CVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGV 491 (567)
Q Consensus 412 Yl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~ 491 (567)
||+||.+|+|+++++++++++||.. +|+++++|+.++|+++++++.|+||+|||+||++|++||+++|+|+|||+|+|+
T Consensus 416 Yl~~~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~ 494 (569)
T 2j5c_A 416 YMKNSWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNA 494 (569)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------
T ss_pred HHhcccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCC
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHhhhhchhcccC-CCCCCCChhHHHHHHhhhcccCC
Q 008387 492 SEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQWLLPSLNLARMMVVLYQNG-DGYTNSTGKTKDRIASLLVDPLP 566 (567)
Q Consensus 492 S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~~~~lN~aR~~~~~Y~~~-Dg~t~~~~~~k~~I~~ll~~pi~ 566 (567)
|+|+|+++++++|+++||+||++|++ +++|++|+++++|+||+++++|+++ ||||.|+..||++|++||++|||
T Consensus 495 s~eeA~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 495 SEEEAREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999 8899999999999999999999999 99999977899999999999997
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=9.1e-145 Score=1238.60 Aligned_cols=492 Identities=36% Similarity=0.635 Sum_probs=460.7
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (567)
|++++|++||+||||||+|||++||+++|+++|+.| ++|+++++.....||++|||+|||||||||+||||||++|+|+
T Consensus 297 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 376 (817)
T 3sdr_A 297 DLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNFKDA 376 (817)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCC
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHHhhc
Confidence 789999999999999999999999999999999999 6665443211146999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhc--------CCCchHHHHHHHccCCccCC
Q 008387 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (567)
Q Consensus 151 ~G~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 219 (567)
+|+|++++ .+||+|||||||||||++|||+|||||++||++||++.+.+ ++++|++||+|||++|||++
T Consensus 377 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~~~~ 456 (817)
T 3sdr_A 377 NGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHAS 456 (817)
T ss_dssp --CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCSTTC
T ss_pred CCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCchhcc
Confidence 99999865 69999999999999999999999999999999999998763 23789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhh
Q 008387 220 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 287 (567)
Q Consensus 220 ~~rlear~yi~~y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve 287 (567)
+||||||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|| .++||||||++|
T Consensus 457 l~Rlear~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 534 (817)
T 3sdr_A 457 VPRVEAKRYCQVYRPD-YARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERPLE 534 (817)
T ss_dssp CHHHHHHHHHTTCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCHHH
T ss_pred ChHHHHHHHHHHhCcc-chhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHH
Q 008387 288 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEM 367 (567)
Q Consensus 288 ~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei 367 (567)
||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||+|||+||.+|+++++|+
T Consensus 535 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~ 614 (817)
T 3sdr_A 535 FYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIVHEV 614 (817)
T ss_dssp HHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhh-HHHHHHHhcCCccccHHHHHh
Q 008387 368 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPM-LAVEALVGLEDMAITKRALDW 445 (567)
Q Consensus 368 ~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~-l~~~~~~~mg~~~l~~e~~e~ 445 (567)
+.++.+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++ ++.+++++||+. +|+++++|
T Consensus 615 ~~~~~~~~g~-~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~ 692 (817)
T 3sdr_A 615 AWEAEKEQGR-ELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQL-LSQEALEK 692 (817)
T ss_dssp HHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCC-CCHHHHHT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCC-CCHHHHhc
Confidence 999888 666 79999999999999999999999999999999999999999999999 888899999999 99999999
Q ss_pred hc--chhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Q 008387 446 AI--SVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPP 522 (567)
Q Consensus 446 ~~--~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p 522 (567)
+. +.|+|+++++.|+||+|||+||++|++||+++|+|+|||||| |+|+|+|+++++++|+++||+||++|++++++|
T Consensus 693 ~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p 772 (817)
T 3sdr_A 693 VDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTREFLKPDDVP 772 (817)
T ss_dssp TCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred ccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 76 456999999999999999999999999999999999999999 799999999999999999999999999988999
Q ss_pred hhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008387 523 LQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 567 (567)
Q Consensus 523 ~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~~ 567 (567)
++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus 773 ~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 773 FACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999778999999999999985
No 8
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=3.1e-144 Score=1226.96 Aligned_cols=490 Identities=32% Similarity=0.559 Sum_probs=460.8
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (567)
|++++|++||+||||||+|||++||+++|+++|+.| ++|+++++.....||++|||+|||||||||+||||||++|+|+
T Consensus 245 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 324 (764)
T 3p5p_A 245 DLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNFKDE 324 (764)
T ss_dssp HHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhhhcC
Confidence 789999999999999999999999999999999999 6665443211146999999999999999999999999999999
Q ss_pred ccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhc---CCCchHHHHHHHccCCccCCcchHH
Q 008387 151 KGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH---LSTPLVDQVEHSLEIPLHRGMPRLE 224 (567)
Q Consensus 151 ~G~F~~~---~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rle 224 (567)
+|+|+++ +.+|++||||||||||+++|||+|||||++||++||++.+.+ ++++|++||+|||++|||+++||||
T Consensus 325 ~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~~~~L~~eV~~aL~~P~~~~l~Rle 404 (764)
T 3p5p_A 325 NGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLE 404 (764)
T ss_dssp TSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCSSSHHHHHHHHHHHSCGGGCCHHHH
T ss_pred CCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHhcCchhccchHHH
Confidence 9999974 589999999999999999999999999999999999998862 5788999999999999999999999
Q ss_pred HhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhh
Q 008387 225 ARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVECYFWI 292 (567)
Q Consensus 225 ar~yi~~y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~ 292 (567)
||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|| .++||||||++|||||+
T Consensus 405 ar~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Yfw~ 482 (764)
T 3p5p_A 405 ARSYIDSYDDN-YVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVYFSS 482 (764)
T ss_dssp HHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHHHHT
T ss_pred HHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHHHHH
Confidence 99999999988 65 499999999999999999999999999999999999 69999999999999999
Q ss_pred hccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHh
Q 008387 293 LGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLV 372 (567)
Q Consensus 293 ~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~ 372 (567)
+| |||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||+|||+||.+|+++++|++.++.
T Consensus 483 ~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~ 560 (764)
T 3p5p_A 483 AT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVV 560 (764)
T ss_dssp CC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred c-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhH
Q 008387 373 N-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPK 451 (567)
Q Consensus 373 ~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~ 451 (567)
+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||++|+|++++++.++++||+. +|+++++|+..+|+
T Consensus 561 ~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~ 638 (764)
T 3p5p_A 561 KVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSN 638 (764)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTSH
T ss_pred HhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhHH
Confidence 7 555 79999999999999999999999999999999999999999999999999999999999 99999999777799
Q ss_pred HHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCChhHHHHH
Q 008387 452 IIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQD-PNHPPLQWLLPS 529 (567)
Q Consensus 452 i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~i~~~wk~ln~e~l~-~~~~p~~~~~~~ 529 (567)
|+++++.|+||+|||+||++|++||+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++|++ ++++|++|++++
T Consensus 639 l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~ 718 (764)
T 3p5p_A 639 MFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFI 718 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHH
T ss_pred HHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999 7999999999999999999999999997 788999999999
Q ss_pred HHHhhhhchhcccCCCCCCCChhHHHHHHhhhcccCCC
Q 008387 530 LNLARMMVVLYQNGDGYTNSTGKTKDRIASLLVDPLPM 567 (567)
Q Consensus 530 lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll~~pi~~ 567 (567)
+|+||++++||+++||||.|+..||++|++||++||++
T Consensus 719 ~n~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 719 FNLRLCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHTHHHHHHHSCC-------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999767999999999999984
No 9
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=3.3e-144 Score=1229.71 Aligned_cols=490 Identities=33% Similarity=0.593 Sum_probs=463.5
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhcccccc
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFKKFRDE 150 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~~F~d~ 150 (567)
|++++|++||+||||||+|||++||+++|+++|++| +++++++......||++|||+|||||||||+||||||++|+|+
T Consensus 269 d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F~d~ 348 (785)
T 3s9v_A 269 DLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTFRDE 348 (785)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 789999999999999999999999999999999999 6565442101146999999999999999999999999999999
Q ss_pred cccccccc---ccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhc--------CCCchHHHHHHHccCCccCC
Q 008387 151 KGEFKAML---TNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH--------LSTPLVDQVEHSLEIPLHRG 219 (567)
Q Consensus 151 ~G~F~~~~---~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~--------~~~~l~~~V~~aL~~P~~~~ 219 (567)
+|+|++++ .+||+||||||||||+++|||+|||||++||++||++.+.. ++++|++||+|||++|||++
T Consensus 349 ~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~~~~ 428 (785)
T 3s9v_A 349 NGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKS 428 (785)
T ss_dssp TSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCGGGC
T ss_pred CCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCccccC
Confidence 99999866 69999999999999999999999999999999999998753 46789999999999999999
Q ss_pred cchHHHhhhHHhhhcCCcc------------ccHHHHHHHhhchHHHHHhhHHHHHHHHHHHHHhCCCCCChhhhhhhhh
Q 008387 220 MPRLEARQYISIYEADNST------------RNELILELAKLDFNLLQALHRIELSEISRWWKDIDFATKLPFARDRLVE 287 (567)
Q Consensus 220 ~~rlear~yi~~y~~~~~~------------~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~l~l~~~l~faRdR~ve 287 (567)
+||||||+||++|+++ +. +|++||||||||||+||++||+||++++||||++|| .++||||||++|
T Consensus 429 l~RleaR~yI~~Y~~~-~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ve 506 (785)
T 3s9v_A 429 MPRLEARSYIENYGPD-DVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTE 506 (785)
T ss_dssp CHHHHHHHHHHHCCTT-CCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCHHH
T ss_pred chHHHHHHHHHHhccc-chhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHHHH
Confidence 9999999999999988 65 499999999999999999999999999999999999 699999999999
Q ss_pred hhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHH
Q 008387 288 CYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEM 367 (567)
Q Consensus 288 ~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei 367 (567)
||||++|++|||+||.+|+++||+++|++++||+||+|||+||+++||+||+|||++++++||+|||+||.+|+++++|+
T Consensus 507 ~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei 586 (785)
T 3s9v_A 507 IYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTFNDI 586 (785)
T ss_dssp HHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhh
Q 008387 368 EDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWA 446 (567)
Q Consensus 368 ~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~ 446 (567)
+.++.+ ++. ++++|++++|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+. +|+++++|+
T Consensus 587 ~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~~ 664 (785)
T 3s9v_A 587 AKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEV-LTDEVLSKI 664 (785)
T ss_dssp HHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSC-CCHHHHTTT
T ss_pred HHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCC-CCHHHHhcc
Confidence 998887 555 79999999999999999999999999999999999999999999999999999999999 999999997
Q ss_pred cchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChhH
Q 008387 447 ISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY-GVSEEEACNKIKGMVEIEWMNINEEIQDPNHPPLQW 525 (567)
Q Consensus 447 ~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~-g~S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~~~ 525 (567)
..+|+|+++++.|+||+|||+||++|++||+++|+|+|||||+ |+|+|+|+++++++|+++||+||++|++++ +|++|
T Consensus 665 ~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~ 743 (785)
T 3s9v_A 665 DRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNNK-IPDIY 743 (785)
T ss_dssp STTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHH
T ss_pred cccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHH
Confidence 6679999999999999999999999999999999999999999 999999999999999999999999999988 99999
Q ss_pred HHHHHHHhhhhchhcccCCCCCCCCh-hHHHHHHhhhcccCC
Q 008387 526 LLPSLNLARMMVVLYQNGDGYTNSTG-KTKDRIASLLVDPLP 566 (567)
Q Consensus 526 ~~~~lN~aR~~~~~Y~~~Dg~t~~~~-~~k~~I~~ll~~pi~ 566 (567)
+++++|+||++++||+++||||.|+. .||++|++||++||.
T Consensus 744 ~~~~~n~aR~~~~~Y~~~Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 744 KRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999975 699999999999983
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=4.4e-108 Score=922.10 Aligned_cols=454 Identities=24% Similarity=0.341 Sum_probs=392.2
Q ss_pred HHHHHHHHHHHHHHHhc-----cccCccCHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhc-CCCCCCCCCCCCCch
Q 008387 49 EKRFETLKAEIEKLLVS-----NNTAWKTLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSH-VNGNCDVNYDHNNDL 122 (567)
Q Consensus 49 ~~~~~~lk~~v~~~l~~-----~~~~~~~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~-~~~~~~~~~~~~~Dl 122 (567)
.+..+-|+..|++..-+ .. |++++|++||+||||||+|||++||+++|+++|+.| ++++++.......||
T Consensus 220 ~~~l~YL~~~v~k~~g~VP~~yP~----d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL 295 (727)
T 3pya_A 220 SNCLEYLRNAVKRFNGGVPNVFPV----DLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDI 295 (727)
T ss_dssp HHHHHHHHHHHHHTTTCCCSSCCC----HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCC----cHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCH
Confidence 45667788888876542 24 789999999999999999999999999999999999 666544320114699
Q ss_pred HHHHHHHHHHhhcCceeehhhhccccccccccccc---cccchHHHHhHhhhccCCCCCchHHHHHHHHHHHHHHhHhhc
Q 008387 123 YIVALRFRLLRQHGYKVSADIFKKFRDEKGEFKAM---LTNDAKGLLCLYEASYLRVQGENILEEACEFSRKHLKSLLSH 199 (567)
Q Consensus 123 ~~~al~FRlLR~hGy~vS~dvf~~F~d~~G~F~~~---~~~dv~glL~LYeAs~l~~~gE~iLdea~~ft~~~L~~~~~~ 199 (567)
++|||+|||||||||+||||||++|+ ++|+|++. ..+|++|||+||||||+++|||+|||||++||++||++.+..
T Consensus 296 ~~tAL~FRLLRqhGy~VS~DvF~~Fk-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~ 374 (727)
T 3pya_A 296 DDTAMAFRLLRQHGYQVSADVFKNFE-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKRER 374 (727)
T ss_dssp HHHHHHHHHHHHTTCCCCGGGGGGGE-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHhcc-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999 88999953 468999999999999999999999999999999999998752
Q ss_pred --------CCCchHHHHHHHccCCccCCcchHHHhhhHHhhhcCCcc-------------ccHHHHHHHhhchHHHHHhh
Q 008387 200 --------LSTPLVDQVEHSLEIPLHRGMPRLEARQYISIYEADNST-------------RNELILELAKLDFNLLQALH 258 (567)
Q Consensus 200 --------~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~~~~-------------~n~~lLelAkldFn~~Q~~h 258 (567)
++++|+++|+|||++|||+++||||||+||++|+++ ++ +|++||||||||||+||++|
T Consensus 375 ~~~~dkw~~~~~L~~~V~~aL~~P~~~~l~RleaR~yI~~Y~~~-~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~h 453 (727)
T 3pya_A 375 EELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGE-NDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQH 453 (727)
T ss_dssp TCCCCSSEECSCHHHHHHHHHHSCGGGCCHHHHHHHHHHHCCGG-GCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccCCcHHHHHHHHhcCcHhcCChHHHHHHHHHHhccC-cchhhhhhhccccccccHHHHHHHHHhHHHHHHHh
Confidence 247899999999999999999999999999999986 54 69999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHH
Q 008387 259 RIELSEISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAI 338 (567)
Q Consensus 259 q~El~~lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai 338 (567)
|+||++++||||++|| .++||||||+||||||++|++|||+||.+|+++||++++++++||+||+|| |||++||+||
T Consensus 454 q~EL~~lsrWwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av 530 (727)
T 3pya_A 454 QLEWDIFQKWYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQF 530 (727)
T ss_dssp HHHHHHHHHHHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHH
T ss_pred HHHHhhhheeHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHH
Confidence 9999999999999999 579999999999999999999999999999999999999999999999999 9999999999
Q ss_pred Hhhhhh---------hhcc---CChh--HHHHHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Q 008387 339 ERWEVV---------AANE---LPKY--MQVCYFALLDVVKEMEDKLVN-KEPLCCMYYAKEAIKGLVKAYFVEAKWFHA 403 (567)
Q Consensus 339 ~rWD~~---------~~~~---lPey--mk~~~~al~~~~~ei~~~~~~-g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~ 403 (567)
+|||.+ +++. +|+| ||+||.+|++++||++.++.+ +|. ++.+|++++|.++++++++||+ +
T Consensus 531 ~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~-~v~~~l~~~W~~~l~s~~~Ea~-~-- 606 (727)
T 3pya_A 531 HEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGR-DVNNLLYLSWGDWMEKWKLYGD-E-- 606 (727)
T ss_dssp HHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHSS-C--
T ss_pred HhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHhcc-c--
Confidence 999974 3333 3877 999999999999999998888 555 6999999999999999999997 2
Q ss_pred CCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhh
Q 008387 404 KYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVE 483 (567)
Q Consensus 404 g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~ 483 (567)
+| |. +++..+.+..|.. +++ ++.. +.+..|.++++.||||+||+.+|++|+
T Consensus 607 ------~E---------Ae-llv~~I~l~sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~---------- 657 (727)
T 3pya_A 607 ------GE---------GE-LMVKMIILMKNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE---------- 657 (727)
T ss_dssp ------CH---------HH-HHHHHHHHHSSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH----------
T ss_pred ------cc---------ee-eeeeeeecCCCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH----------
Confidence 33 22 3344444444777 888 6654 566779999999999999999999977
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCChhHHHHHHHHhhhhchhcccCCCCCCCChhHHHHHHhhh
Q 008387 484 CYVQQYGVSEEEACNKIKGMVEIEWMNINEEIQDPN--HPPLQWLLPSLNLARMMVVLYQNGDGYTNSTGKTKDRIASLL 561 (567)
Q Consensus 484 cyMke~g~S~EeA~~~i~~~i~~~wk~ln~e~l~~~--~~p~~~~~~~lN~aR~~~~~Y~~~Dg~t~~~~~~k~~I~~ll 561 (567)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||+.|+ |..+|.++|
T Consensus 658 -------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~--ay~~p~--i~~hI~kVl 715 (727)
T 3pya_A 658 -------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF--ALCGDH--LQTHISKVL 715 (727)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH--HHHTTS--CHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh--hcCCHH--HHHHHHHHH
Confidence 55889999999999999999754 699999 999999999986 999985 999999999
Q ss_pred cccCC
Q 008387 562 VDPLP 566 (567)
Q Consensus 562 ~~pi~ 566 (567)
++||-
T Consensus 716 ~~~~~ 720 (727)
T 3pya_A 716 FQKVG 720 (727)
T ss_dssp HSCCC
T ss_pred cCccc
Confidence 99984
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=1.9e-51 Score=429.10 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=228.3
Q ss_pred HHhhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhcccccc--CCHHH
Q 008387 255 QALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVY--GTLEE 330 (567)
Q Consensus 255 Q~~hq~El~~ls-rWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~y--gt~eE 330 (567)
+..|.+|+++.+ +||+++|+.+ .||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||.+ ||++|
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee 93 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPED 93 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHH
Confidence 456777887766 6999999965 59999999999999999999999999999 9999999999999999998 69999
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCC-Ch
Q 008387 331 LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVP-TF 409 (567)
Q Consensus 331 l~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vP-Tl 409 (567)
++.||+++.+|+.+ .+|+++++++.++.+++++++..+.+ ....++++.|++|++++++||+|+.+|++| |+
T Consensus 94 ~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~ 166 (337)
T 1ps1_A 94 TKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWRNYFDGYVDEAESRFWNAPCDSA 166 (337)
T ss_dssp HHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHHTTC-------CH
T ss_pred HHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 99999999999864 57999999999999999999865433 468899999999999999999999999999 99
Q ss_pred HHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhc
Q 008387 410 EECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQY 489 (567)
Q Consensus 410 eEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~ 489 (567)
+|||++|++|+|+++++++++++||.. +|+++++. +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++
T Consensus 167 eEYl~~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~ 244 (337)
T 1ps1_A 167 AQYLAMRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREH 244 (337)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHc
Confidence 999999999999999999999999999 99998876 5666899999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008387 490 GVSEEEACNKIKGMVEIEWMNINEEI 515 (567)
Q Consensus 490 g~S~EeA~~~i~~~i~~~wk~ln~e~ 515 (567)
|+|+|+|++++.++|+++||++|++.
T Consensus 245 g~s~eeA~~~v~~~i~~~~~~~~~~~ 270 (337)
T 1ps1_A 245 GWSKSRSVSHMQNEVRARLEQYLLLE 270 (337)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2e-49 Score=406.90 Aligned_cols=242 Identities=12% Similarity=0.084 Sum_probs=223.0
Q ss_pred hhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhccccccCCHHHHHHH
Q 008387 257 LHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEELKLF 334 (567)
Q Consensus 257 ~hq~El~~ls-rWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl~~f 334 (567)
-|.+|+++.+ +||+++|+. +.||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|++.|
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~ 90 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAY 90 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHH
Confidence 4677888777 577999996 569999999999999999999999999999 999999999999999999 889999999
Q ss_pred HHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHh
Q 008387 335 THAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVE 414 (567)
Q Consensus 335 t~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~ 414 (567)
++++.+|+.+ +.+|+||+++++++++++++++..+ + .+.++.|+.++++|+ ||+|+.+|++||++|||+
T Consensus 91 ~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~-~-------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~ 159 (300)
T 1di1_A 91 NNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHD-A-------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLE 159 (300)
T ss_dssp HHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHH
T ss_pred HHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhC-h-------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHH
Confidence 9999999985 4789999999999999999998664 2 245677999999997 899999999999999999
Q ss_pred hhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCC--------CCchhhHHH
Q 008387 415 NSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVECYV 486 (567)
Q Consensus 415 ~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~--------~~n~V~cyM 486 (567)
+|++|+|+++++++++++||.. +|+++++ ..|+|+++++.++||+|||+||++|+++|+ ++|+|.|||
T Consensus 160 ~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m 235 (300)
T 1di1_A 160 YREKDVGKALLSALMRFSMGLR-LSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLA 235 (300)
T ss_dssp HHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHH
T ss_pred HHhhhccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHH
Confidence 9999999999999999999999 9999998 469999999999999999999999999999 789999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008387 487 QQYGVSEEEACNKIKGMVEIEWMNINEEI 515 (567)
Q Consensus 487 ke~g~S~EeA~~~i~~~i~~~wk~ln~e~ 515 (567)
+++|+|+|+|+++++++|+++||++|+..
T Consensus 236 ~~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 236 EESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999865
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.5e-48 Score=400.17 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=221.2
Q ss_pred HHHhhHHHHHHHH-HHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhccccccCCHHHH
Q 008387 254 LQALHRIELSEIS-RWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEEL 331 (567)
Q Consensus 254 ~Q~~hq~El~~ls-rWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eEl 331 (567)
-...|.+|+++.+ +||+++|+..+ ||+|+|++++|||.++++++|+++.+|+ ++||+++|+|++||+||. |+++|+
T Consensus 24 ~~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 24 LCHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 3456778888877 57799999765 9999999999999999999999999999 999999999999999999 899999
Q ss_pred HHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHH
Q 008387 332 KLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEE 411 (567)
Q Consensus 332 ~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleE 411 (567)
+.|++++.+|+.+ +.+|+||++++.++++++++++..+ + .+.++.|+.++ ++++|++|+.+|++||++|
T Consensus 102 ~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~ee 170 (320)
T 3bny_A 102 SAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGG 170 (320)
T ss_dssp HHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHH
T ss_pred HHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHH
Confidence 9999999999975 4689999999999999999998654 2 23455566677 5999999999999999999
Q ss_pred HHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCC--------CCchhh
Q 008387 412 CVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGD--------APSSVE 483 (567)
Q Consensus 412 Yl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~--------~~n~V~ 483 (567)
||++|++|+|+++++++++++||.. +|+++++ ..|+|+++++.++||+|||+||++|+++|+ ++|+|.
T Consensus 171 Yl~~r~~s~g~~~~~~~~~~~~g~~-l~~e~~~---~~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~ 246 (320)
T 3bny_A 171 YLEYRERDVGKELLAALMRFSMGLK-LSPSELQ---RVREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQ 246 (320)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTCC-CCHHHHH---HTHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHH
T ss_pred HHHHhhhcccHHHHHHHHHHHcCCC-CCHHHHH---HHHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHH
Confidence 9999999999999999999999999 9999998 479999999999999999999999999998 789999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008387 484 CYVQQYGVSEEEACNKIKGMVEIEWMNINEEI 515 (567)
Q Consensus 484 cyMke~g~S~EeA~~~i~~~i~~~wk~ln~e~ 515 (567)
|||+++|+|+|+|++++.+++++.|+++|+..
T Consensus 247 ~~m~~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 247 ILAQEADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999855
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=2.4e-46 Score=398.32 Aligned_cols=242 Identities=11% Similarity=-0.030 Sum_probs=223.4
Q ss_pred HHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhccccc--cC-CHHHHHHHHHHHHh
Q 008387 265 ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDV--YG-TLEELKLFTHAIER 340 (567)
Q Consensus 265 lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~--yg-t~eEl~~ft~ai~r 340 (567)
+.+||+++|+.. .+++|+|+++++||.++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.|++++.+
T Consensus 66 ~~~W~~~~gl~~-~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~ 144 (382)
T 3kb9_A 66 TRTWLLEKRLMP-ADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHT 144 (382)
T ss_dssp HHHHHHHTTSSC-HHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-CHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHH
Confidence 457999999953 37999999999999999999999999999 999999999999999996 66 99999999999998
Q ss_pred hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhcccc
Q 008387 341 WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSS 420 (567)
Q Consensus 341 WD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ss 420 (567)
+-.. ...+|++++++++++.+++++++..+.+ ....+++++|++|+++|++||+|+.+|++||++|||++|++|+
T Consensus 145 ~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~ 219 (382)
T 3kb9_A 145 ALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTF 219 (382)
T ss_dssp HHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HhcC-CCCCCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhc
Confidence 6222 2336889999999999999999755444 3589999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcCCCCchhhHHHHhcCCCHHHHHHHH
Q 008387 421 GYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKI 500 (567)
Q Consensus 421 g~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~~~n~V~cyMke~g~S~EeA~~~i 500 (567)
|++++++++++++|.. +|++++++ +..++|+++++.++||+|||+||++|+++|+++|+|.|||+++|+|+|+|++++
T Consensus 220 g~~~~~~l~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v 297 (382)
T 3kb9_A 220 AHWIWTDLLEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEV 297 (382)
T ss_dssp THHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999 99999988 677889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 008387 501 KGMVEIEWMNINEE 514 (567)
Q Consensus 501 ~~~i~~~wk~ln~e 514 (567)
+++|+++||++|+.
T Consensus 298 ~~~i~~~~k~~~~~ 311 (382)
T 3kb9_A 298 RRRVEECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999984
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=100.00 E-value=5.4e-33 Score=299.08 Aligned_cols=245 Identities=13% Similarity=0.072 Sum_probs=188.3
Q ss_pred HHHH-HHHHHHHhCCCCCChhhhhhhhhhhhhhhccccCCCc-chhhH-HHhhHHHHHHhhhcc-ccccC-CHHHH-HHH
Q 008387 261 ELSE-ISRWWKDIDFATKLPFARDRLVECYFWILGVYFEPKY-STTRK-FMTKIIAIASVIDDI-YDVYG-TLEEL-KLF 334 (567)
Q Consensus 261 El~~-lsrWwk~l~l~~~l~faRdR~ve~yfw~~~~~feP~~-s~~Rl-~laK~~~l~~viDD~-fD~yg-t~eEl-~~f 334 (567)
|++. +..|..++++... +-.|+++..+-|-.++.+..|.. +..|+ +++||++|+|++||. +|..| +.+.+ ..+
T Consensus 130 ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~llaa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~~l 208 (433)
T 3v1v_A 130 EVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGRYMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGGRL 208 (433)
T ss_dssp HHHHHHHHHHHHTSCCCC-----CCSCHHHHHHHHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHHHH
T ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHHHH
Confidence 4443 4469999876432 35578888885555554555999 79999 889999999999999 59855 33321 122
Q ss_pred HH---HHHhhhh----hh--hccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 008387 335 TH---AIERWEV----VA--ANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKY 405 (567)
Q Consensus 335 t~---ai~rWD~----~~--~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~ 405 (567)
.. ++..... .. ....+ -.++..+++++++++...+.+ ....++++.|++|+++|++||+|+.+|+
T Consensus 209 ~~a~~~~d~l~~~~~g~p~~~~~~~--~dp~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~ 282 (433)
T 3v1v_A 209 LLAHTAIDHFHSTAEYTPTWQASLA--ADAPRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGH 282 (433)
T ss_dssp HHHHTTTSCCCCCTTTHHHHHHHTT--SSHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhhcccCCCCccccccC--CchHHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 22 1111100 00 00001 124568999999999876555 4689999999999999999999999999
Q ss_pred CCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHHhcCCcchhhhhhcC-CCCchhhH
Q 008387 406 VPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARLDDDVHTYKVEQERG-DAPSSVEC 484 (567)
Q Consensus 406 vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG-~~~n~V~c 484 (567)
+||++|||++|++| |+.+++.++.+++|.. +|++++++ +...+|+++++.++||+|||+||+||+++| +++|+|.|
T Consensus 283 vPsleEYl~~R~~s-g~~p~~~l~e~~~g~~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~ 359 (433)
T 3v1v_A 283 VPEVWEYLAMRQFN-NFRPCPTITDTVGGYE-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVV 359 (433)
T ss_dssp CCCHHHHHHHHHHS-SSTTTGGGHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHH
T ss_pred CCCHHHHHHHHHHH-hHHHHHHHHHHHcCCC-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHH
Confidence 99999999999999 6666667788889999 99999987 566789999999999999999999999995 78999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 008387 485 YVQQYGVSEEEACNKIKGMVEIEWMNINEEI 515 (567)
Q Consensus 485 yMke~g~S~EeA~~~i~~~i~~~wk~ln~e~ 515 (567)
||+++|+|+|+|++++.++++++++++.+..
T Consensus 360 ~mke~g~S~eeA~~~v~~~i~~~~~~F~~~~ 390 (433)
T 3v1v_A 360 IAEREQLCERDAYLKAVEVHNELQHSFEAAA 390 (433)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887643
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.76 E-value=2.9e-18 Score=181.07 Aligned_cols=225 Identities=11% Similarity=0.028 Sum_probs=169.0
Q ss_pred HHHHHHHHhC------------CCCCChhhhhhhhhhhhhhhccccCCCcchhhH-HHhhHHHHHHhhhccccccCCHHH
Q 008387 264 EISRWWKDID------------FATKLPFARDRLVECYFWILGVYFEPKYSTTRK-FMTKIIAIASVIDDIYDVYGTLEE 330 (567)
Q Consensus 264 ~lsrWwk~l~------------l~~~l~faRdR~ve~yfw~~~~~feP~~s~~Rl-~laK~~~l~~viDD~fD~ygt~eE 330 (567)
+..+|..+.| +. .-|-..++++.+=.|+++..| |..+...+ .++++.+|+|++||++|..+ ++
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~laar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~~ 109 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGMVVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--PT 109 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHHHHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--HH
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--HH
Confidence 4448998888 52 234566777777777666555 99999988 88999999999999999754 66
Q ss_pred HHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChH
Q 008387 331 LKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFE 410 (567)
Q Consensus 331 l~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTle 410 (567)
+..|.+.+.+ . .. |+ .++..++.+.+.++...+.+ .+..++.++|.+|+.++..|+.. .+.+|+.+
T Consensus 110 l~~~~~~ll~--G-~~---~~--~Pl~~al~dl~~rl~~~~~p----~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~ 175 (374)
T 1yyq_A 110 MVNYFDDLQA--G-RE---QA--HPWWALVNEHFPNVLRHFGP----FCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSH 175 (374)
T ss_dssp HTTHHHHHHH--T-CC---CS--SHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCT
T ss_pred HHHHHHHHhc--C-CC---CC--ChHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHH
Confidence 7777766553 1 11 11 24556666766666543333 67889999999999999999873 67789999
Q ss_pred HHHhhhccccchhhHHHHHHHhcCCccccHHHHH-h--hcchhHHHHHHHHHHHHhcCCcchhhhhhc-CCCCchhhHHH
Q 008387 411 ECVENSTMSSGYPMLAVEALVGLEDMAITKRALD-W--AISVPKIIRSSSLIARLDDDVHTYKVEQER-GDAPSSVECYV 486 (567)
Q Consensus 411 EYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e-~--~~~~p~i~~~~~~i~RL~NDI~S~~~E~~r-G~~~n~V~cyM 486 (567)
+|...++.++|+.-.... + . +|...+. . .+.+...+.....++.|+|||.||.||... |+.+|.|..++
T Consensus 176 ~Y~~~rR~~sG~~E~~~~--~----~-~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~ 248 (374)
T 1yyq_A 176 DYPQFLRRMNGLGHCVGA--S----L-WPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYV 248 (374)
T ss_dssp THHHHHHHHHHCHHHHHH--T----T-CCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHH
T ss_pred HHHHHHHhhccHHHHHHH--h----h-ccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhheh
Confidence 999998888887533322 2 2 3333321 1 122345677777799999999999999985 99999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 487 QQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 487 ke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
.++|+|.++|++++..++..+..++-.
T Consensus 249 ~~~g~S~~eAl~~v~~~~~~~~~r~~~ 275 (374)
T 1yyq_A 249 VSDEISLHEALEKLTQDTLHSSKQMVA 275 (374)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888855
No 17
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.27 E-value=8.3e-05 Score=85.52 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=28.4
Q ss_pred ccccCCCCCCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 008387 16 ADVNRRSSNYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLV 64 (567)
Q Consensus 16 ~~~~r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 64 (567)
..+.||+|||+||+|+++||++.. .++..+.+.+++++|+++||+||.
T Consensus 21 ~~~~Rrsany~Ps~W~~~~i~sl~-~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 21 SGLIRRTANPHPNVWGYDLVHSLK-SPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp --------------CHHHHHHTCC-CGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCCCCCCCCCCCCCCeeeccC-CcccchhHHHHHHHHHHHHHHHhc
Confidence 445899999999999999999643 334567889999999999999996
No 18
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=87.54 E-value=24 Score=35.05 Aligned_cols=193 Identities=17% Similarity=0.131 Sum_probs=101.8
Q ss_pred hhhHHHhhHHHHHHhhhccccccCCHHHHHHHHHHHHhh-hhhhh--ccCChhHHHHHHHHHHHHHHHHHHHhcCCCcch
Q 008387 303 TTRKFMTKIIAIASVIDDIYDVYGTLEELKLFTHAIERW-EVVAA--NELPKYMQVCYFALLDVVKEMEDKLVNKEPLCC 379 (567)
Q Consensus 303 ~~Rl~laK~~~l~~viDD~fD~ygt~eEl~~ft~ai~rW-D~~~~--~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~ 379 (567)
..|-.+.-+-.+.-.+||+=|....+.+|+.+-+.+++- +.... ...|+ .++..++.+++.+.. - .
T Consensus 38 ~~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~------l---~ 106 (293)
T 3acx_A 38 DQRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKN------I---A 106 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSC------C---C
T ss_pred HHHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhC------C---C
Confidence 346555567777888999999766554466555555441 11110 00022 366777777665431 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHH
Q 008387 380 MYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLI 459 (567)
Q Consensus 380 ~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i 459 (567)
++.+.+++.++-. +......+|++|+......+.|.-..+++-.+|..+ .++..+...+.-.-.+.++
T Consensus 107 ----~~~~~~li~g~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~---~~~~~~~A~~lG~AlQltN-- 174 (293)
T 3acx_A 107 ----FQSFYNLIDTVYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE---THQTYDVARRLGESLQLIN-- 174 (293)
T ss_dssp ----HHHHHHHHHHHHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC---CHHHHHHHHHHHHHHHHHH--
T ss_pred ----HHHHHHHHHHHHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHH--
Confidence 2344666666643 334456789999988888887766655555554322 1233222111111222222
Q ss_pred HHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 008387 460 ARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEE---------ACNKIKGMVEIEWMNINEEIQDPNHPPLQWL 526 (567)
Q Consensus 460 ~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~Ee---------A~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 526 (567)
++-|+. ....+|-+ +.- -|.++|+|.++ ..+-+..++..+..-+.+..--...+|....
T Consensus 175 --ilRDv~---eD~~~gR~YLP~d---~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 175 --ILRDVG---EDFENERIYFSKQ---RLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp --HHHCHH---HHHHTTCCCSCHH---HHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred --HHHHHH---HHHhCCcEEeCHH---HHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 233443 33455644 433 36789999876 2344566666666655543322234665443
No 19
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=82.07 E-value=9.4 Score=39.57 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.+..+.+++..++.+-..+..|.... ||.++|+++-..-+|..+..+. .+| ++. .+++..+. .-.+-...
T Consensus 161 ~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~-~lga~lag--a~~~~~~~---l~~~g~~l 232 (360)
T 3lmd_A 161 TVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAG-YLGAMHAG--AAPEHIDA---LKNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHH-HHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 56778888899999999999997655 9999999886655554433222 222 121 34454433 35677788
Q ss_pred HHHHHHhcCCcchhh
Q 008387 457 SLIARLDDDVHTYKV 471 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~ 471 (567)
++..-+.||+..+.-
T Consensus 233 G~aFQI~DDilD~~~ 247 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFS 247 (360)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccC
Confidence 888899999887753
No 20
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=80.30 E-value=49 Score=32.86 Aligned_cols=186 Identities=14% Similarity=0.147 Sum_probs=93.5
Q ss_pred hHHHhhHHHHHHhhhccccccCC--HHHHHHHHHHHHhhhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Q 008387 305 RKFMTKIIAIASVIDDIYDVYGT--LEELKLFTHAIERWEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEPLCCMYY 382 (567)
Q Consensus 305 Rl~laK~~~l~~viDD~fD~ygt--~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~~~~~~~ 382 (567)
|-.+.-+-.+.=.+||+-|.... ...|+.+-+.+.+.- ..-|. .+++.++.+++.+.. - ..
T Consensus 41 R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~----~g~~~--~pv~~al~~~~~~~~------l---~~-- 103 (294)
T 4hd1_A 41 RPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAF----AGEAT--TPAFRALQFTIATCN------L---PM-- 103 (294)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHH----HTCCC--SHHHHHHHHHHHHHT------C---CS--
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHh----cCCCC--CHHHHHHHHHHHHcC------C---CH--
Confidence 44344556667788999996442 334444444444311 11132 267778877776642 1 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHHHHHHH
Q 008387 383 AKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSSLIARL 462 (567)
Q Consensus 383 ~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL 462 (567)
+.+.+++.++.... .....+|++|+......+.|.--.+++-.+| .. +++..... ...+...-|
T Consensus 104 --~~~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~g--~~--~~~~~~~A-------~~lG~AlQl 167 (294)
T 4hd1_A 104 --EPFLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIFG--CL--DDERARLS-------DATCTALQV 167 (294)
T ss_dssp --HHHHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHTT--CC--SHHHHHHH-------HHHHHHHHH
T ss_pred --HHHHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHhC--CC--CHHHHHHH-------HHHHHHHHH
Confidence 23455666665433 2345689888888777777655444444443 32 33333221 112222233
Q ss_pred hcCCcchhhhhhcCCC--CchhhHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 008387 463 DDDVHTYKVEQERGDA--PSSVECYVQQYGVSEEEA---------CNKIKGMVEIEWMNINEEIQDPNHPPLQWL 526 (567)
Q Consensus 463 ~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~EeA---------~~~i~~~i~~~wk~ln~e~l~~~~~p~~~~ 526 (567)
.|=+.......++|-+ +.- .|.++|+|.++- ..-+..+++.+-.-+.+..--...+|..+.
T Consensus 168 tNilRDv~eD~~~gR~YlP~~---~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r 239 (294)
T 4hd1_A 168 ANHMQDIDRDLALGRIYVPRA---DLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLA 239 (294)
T ss_dssp HHHHHTHHHHHHTTCBCSCHH---HHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHH
T ss_pred HHHHHhchhhhccCceeCCHH---HHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 3322222333455643 432 478899998752 233444444444333333222245776544
No 21
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=79.05 E-value=12 Score=37.62 Aligned_cols=141 Identities=7% Similarity=-0.039 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.+..+.++...++.+-..+..|... .||.++|+..-..-+|.-+..+ ...| ++. .+++..+. .-.+-+..
T Consensus 128 ~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 128 VIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAIS-ASIGAYTGG--AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4556666777788888888888643 4899999988655555433222 2222 122 34544433 35577778
Q ss_pred HHHHHHhcCCcchhhhhh-----cCCCCchhhHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCh-hHHHH
Q 008387 457 SLIARLDDDVHTYKVEQE-----RGDAPSSVECYVQQYGV--SEEEACNKIKGMVEIEWMNINEEIQDPNHPPL-QWLLP 528 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~E~~-----rG~~~n~V~cyMke~g~--S~EeA~~~i~~~i~~~wk~ln~e~l~~~~~p~-~~~~~ 528 (567)
++..-+.||+..+.-..+ .|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+.. +|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~-------lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLET-------FRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-------SCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHh-------CCCchHHHH
Confidence 888899999988754432 222 3666666654421 1555666666666666655543 553 44555
Q ss_pred HHHHhhh
Q 008387 529 SLNLARM 535 (567)
Q Consensus 529 ~lN~aR~ 535 (567)
..++++.
T Consensus 272 L~~l~~~ 278 (295)
T 3ipi_A 272 LFQITDY 278 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5566653
No 22
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=72.22 E-value=58 Score=33.30 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=57.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 455 (567)
..+..+.++...++.+-+.+..|.. +..||.++|+.+-..-+|..+..+ ...| ++. .+++..+. .-.+-+.
T Consensus 151 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 223 (345)
T 3oyr_A 151 KALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAA-SEAGAVSAG--VDVAKSEA---LRDYGLN 223 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4567778888889999888888853 345899999998666555443322 2222 122 35554433 3567778
Q ss_pred HHHHHHHhcCCcchhh
Q 008387 456 SSLIARLDDDVHTYKV 471 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~~ 471 (567)
.++..-+.||+..+.-
T Consensus 224 lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 224 LGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888899999988754
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=72.18 E-value=35 Score=34.00 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHH--HhcCCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEAL--VGLEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~--~~mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.+..+.++...++.+-..+..|......||.++|+.+-..-+|..+...... +..|. +++ ..-++-...
T Consensus 135 ~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag~---~~~------~l~~~g~~l 205 (284)
T 2ftz_A 135 IFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXGX---DHT------XMXLLGEXF 205 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC---CCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhCC---Chh------HHHHHHHHH
Confidence 4666677778888888888898765447899999998665555443222111 11122 222 224567778
Q ss_pred HHHHHHhcCCcchhhhh-hcCC-----C--CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 457 SLIARLDDDVHTYKVEQ-ERGD-----A--PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~E~-~rG~-----~--~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
++..-+.||+..+.-.. .-|. . .+...+| ..|.|.+.+.+.++++.+.++.
T Consensus 206 G~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 206 GVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88889999998886532 2232 1 2444333 3788999999999999988876
No 24
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=72.00 E-value=81 Score=32.12 Aligned_cols=87 Identities=10% Similarity=0.014 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 455 (567)
..+..+.++....+.+-+.+..|.. +..||.++|+.+-..-+|..+..+ ...| ++. .+++..+. .-.+-..
T Consensus 139 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~ 211 (341)
T 3mzv_A 139 RVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAA-TEVGGIIGG--APEDQVQA---LFDYGDA 211 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHH
Confidence 4567778888889999998888864 446899999987655555443222 2222 122 34544433 3567778
Q ss_pred HHHHHHHhcCCcchhh
Q 008387 456 SSLIARLDDDVHTYKV 471 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~~ 471 (567)
.++..-+.||+..+.-
T Consensus 212 lG~aFQI~DD~ld~~~ 227 (341)
T 3mzv_A 212 LGIAFQIVDDLLDYGG 227 (341)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhccC
Confidence 8888889999887643
No 25
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=70.17 E-value=36 Score=34.57 Aligned_cols=111 Identities=10% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
..++.+-..+..|... .||.++|+.+- ..|++. .. .....| ++.. .+++..+. .-++-...++..-+.|
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L-~~-~a~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~D 229 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGAL-IR-ASVRLACLARPG-LPAEQFDR---LDHYAKCIGLAFQIQD 229 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHH-HH-HHHHHHHTTSTT-CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHH-HH-HHHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3466777777777543 78999999985 445443 22 222222 2222 34554433 3556777888888999
Q ss_pred CCcchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-.. ..|. .+.+.+| ..|.|.+.+.+.++++...+..
T Consensus 230 DiLD~~~d~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 282 (324)
T 3ts7_A 230 DILDEESDTQTLGKTRGKDRDHNK-PNYPALL------GLSGAKEKAEEMHEAALESLAG 282 (324)
T ss_dssp HHHHHTCC---------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHhccCCHHHhCCCccchhhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 988775321 1222 2555554 4789999999999988876653
No 26
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=69.94 E-value=21 Score=35.91 Aligned_cols=112 Identities=10% Similarity=0.089 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
..++.+-..+..|... .+|.++|+.+-..-+|..+..+ ...|. + . .+++..+. .-++-...++..-+.||
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~la-g-~~~~~~~~---l~~~g~~lG~aFQI~DD 219 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFA-VMSAADIA-N-VDDTTKEH---LESYSYHLGMMFQIKDD 219 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHH-T-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHc-C-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777777543 7899999998666555443322 22221 1 1 34554433 35677788888899999
Q ss_pred Ccchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-| |. .+...+|- .+.|.+.+.+.++++.+.+..
T Consensus 220 ilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 220 LLDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 112 11 25554443 578889999999988877765
No 27
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=69.42 E-value=36 Score=34.67 Aligned_cols=88 Identities=7% Similarity=0.008 Sum_probs=58.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHHhhcchhHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
..+..+.+....++.+-..+..|.. +..||.++|+.+-..-+|..+..+.-.-+ ++. .+++..+. .-.+-...
T Consensus 133 ~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~---l~~~g~~l 206 (334)
T 3rmg_A 133 EIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQ--VGEEEVAF---ARLLGEYI 206 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4677788888999999998988854 34589999999866655554332221111 122 34544433 35677788
Q ss_pred HHHHHHhcCCcchhh
Q 008387 457 SLIARLDDDVHTYKV 471 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~ 471 (567)
+...-+.||+..+..
T Consensus 207 G~aFQi~DD~ld~~~ 221 (334)
T 3rmg_A 207 GICFQIKDDIFDYFD 221 (334)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhccCCC
Confidence 888899999888763
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=68.66 E-value=25 Score=35.28 Aligned_cols=111 Identities=16% Similarity=0.153 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
..++.+-..+..|...+..||.++|+.+-..-+|..+..+ ...| ++. .+++ ..-.+-...+...-+.||
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~-~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DD 217 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFA-AQAGAILAG--ADRG------PLTAYATALGLAFQIADD 217 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTT
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHH-HHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHH
Confidence 4467777778888765778999999997544444332222 1222 111 2222 124567788888899999
Q ss_pred Ccchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-| |. .+.+.+| ..+.|.+.+.+.++++...++.
T Consensus 218 ilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 218 ILDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp CC---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875432 112 22 2555444 3577888899999988877764
No 29
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=65.33 E-value=48 Score=33.73 Aligned_cols=86 Identities=17% Similarity=0.087 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.+..+.++...++.+-..+..|.... ..|.++|+++-..-+|.....+ ...|+ +. .+++..+. .-.+-...
T Consensus 138 ~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 210 (342)
T 1wy0_A 138 VLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEAS-AKVGGIIGT--DNEEYIKA---LSSWGRNV 210 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 45666777788899999999997543 4599999998666555443332 22221 11 34554433 35677888
Q ss_pred HHHHHHhcCCcchhh
Q 008387 457 SLIARLDDDVHTYKV 471 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~ 471 (567)
++..-+.||+..+.-
T Consensus 211 G~aFQI~DD~lD~~~ 225 (342)
T 1wy0_A 211 GIAFQIWDDVLDLIA 225 (342)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhccC
Confidence 888899999988753
No 30
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=64.26 E-value=26 Score=35.29 Aligned_cols=112 Identities=13% Similarity=0.132 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~-~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
..++.+-..+..|. +..||.++|+.+-. .|++. +.. ....| ++.. .+++.. ...-++-...+...-+.|
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L-~~~-~~~~ga~lag~-~~~~~~---~~l~~~g~~lG~aFQI~D 229 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGAL-MRC-AIRLGALAAGE-KGRAML---PHLDRYAEAVGLAFQVQD 229 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHH-HHH-HHHHHHHTTTH-HHHTTH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHH-HHH-HHHHHHHHcCC-CCHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35677777777885 45789999999854 55543 222 22222 1221 123322 223557777888889999
Q ss_pred CCcchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-+. .-| |. .+...+| ..+.|.+.+.+.++++.+.++.
T Consensus 230 DilD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 230 DILDIISDTETLGKPQGSDQELNKSTYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHHHTTC---------------CCCHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCCHHHhCCCcchHHhcCCchHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 988775432 112 11 2555554 3688999999999998887764
No 31
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=63.34 E-value=46 Score=33.42 Aligned_cols=110 Identities=11% Similarity=0.074 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCC
Q 008387 390 LVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 466 (567)
Q Consensus 390 ~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 466 (567)
++.+-..+..|... .||.++|+.+- ..|++. +..+ ...| ++.. .+++..+. ...+-...++..-+.||+
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L-~~~~-~~~ga~lag~-~~~~~~~~---l~~~g~~lGlaFQI~DDi 225 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGAL-IEAS-VILGALASGR-AEKGELKA---LQTYAQAIGLAFQVQDDI 225 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHH-HHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 56676777777543 48999999985 455443 2222 2222 1221 15554433 356777888888999999
Q ss_pred cchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 467 HTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 467 ~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
..+.-.. .-| |. .+.+.+| ..+.|.+.+++.++++.+.++.
T Consensus 226 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 276 (304)
T 3lsn_A 226 LDVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALRP 276 (304)
T ss_dssp HHHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 222 22 2555554 4789999999999988877654
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=62.48 E-value=43 Score=34.17 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
..++.+-..+..|... .+|.++|+.+-..-+|..+... ...| ++. .+++..+. .-++-...++..-+.||
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a-~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~DD 263 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFA-CEAGAIIAG--SNQAERQR---LRLFGEKIGLSFQLADD 263 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHH-HHHHHHHhC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566777777778654 6899999998766555443222 2222 111 34554433 35677788888899999
Q ss_pred Ccchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-| |. .+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 264 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 264 LLDLTADAATMGKATGKDAARGKGTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHHC-----------------CCCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHhcCCHHHhCCCcchHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 98875332 112 11 2555444 2688999999999999887765
No 33
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=62.02 E-value=41 Score=33.83 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 389 GLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 389 ~~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
.++.+-..+..|.. ..||.++|+.+- ..|++. +... ...| ++. .+++..+. .-.+-...++..-+.||
T Consensus 157 ~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L-~~~~-~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DD 227 (302)
T 3p8l_A 157 GMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGAL-IEFA-LIAGGVLAN--QTEEVIGL---LTQFAHHYGLAFQIRDD 227 (302)
T ss_dssp THHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45666666667743 468999999984 555543 2222 2222 122 34554433 35677788888889999
Q ss_pred Ccchhhhh-----------hcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-----------ERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-----------~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. ..|.. +...+| ..+.|.+.+.+.++++.+.++.
T Consensus 228 ilD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 228 LLDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88774321 12222 455444 4789999999999999988775
No 34
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=59.77 E-value=99 Score=31.35 Aligned_cols=102 Identities=10% Similarity=0.033 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
....+.+....++.+-+.+..|.. +..||.++|++.-..-+|..+..+ ...|+ +. .+++..+. .-.+-...
T Consensus 144 ~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 216 (334)
T 3pko_A 144 LIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAG--APQSVIDR---TRDIGIAI 216 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 466677778888888887877753 356899999987555444433222 22221 22 34554433 34566777
Q ss_pred HHHHHHhcCCcchhh-----------hhhcCCCCchhhHHHHh
Q 008387 457 SLIARLDDDVHTYKV-----------EQERGDAPSSVECYVQQ 488 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~-----------E~~rG~~~n~V~cyMke 488 (567)
++..-+.||+..+.- ....|.. +...+|.-+
T Consensus 217 G~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 217 GCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 788888888877642 2334444 666566544
No 35
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=58.55 E-value=54 Score=33.15 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 389 GLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 389 ~~~~a~l~EA~W~~~g~vPTleEYl~~~~-~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
.++.+-..+..|. +..||.++|+.+-. .|++. ...+ ...| ++.. .+++..+. .-.+-...++..-+.||
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~a-~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DD 223 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGAL-IKAS-VRMGALSTGQ-VKPEQLAK---LDAYAHAIGLAFQVQDD 223 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHTTTC-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHH-HHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566767677775 34589999999854 45443 2222 2222 2232 34544433 35577788888899999
Q ss_pred Ccchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-| |. .+.+.+| ..|.|.+.+++.++++.+.++.
T Consensus 224 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 224 IIDLTSDTETLGKTQFSDAEANKATYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHHTC----------------CCCCHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHhccCChHhhCCCcchHHhcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 88774332 112 11 2666555 3789999999999999887765
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=54.01 E-value=74 Score=32.38 Aligned_cols=87 Identities=13% Similarity=0.004 Sum_probs=55.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 455 (567)
..+..+.++...++.+-..+..|... ..+|.++|+..-..-+|..+..+. ..| ++. .+++..+. .-.+-..
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~---l~~~g~~ 225 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSC-KAVAVLTG--QTAEVAVL---AFEYGRN 225 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHH-HHHHHTTT--CCHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--cCHHHHHH---HHHHHHH
Confidence 35667777788888888877776432 357999999985544443332222 222 222 34554433 3556777
Q ss_pred HHHHHHHhcCCcchhh
Q 008387 456 SSLIARLDDDVHTYKV 471 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~~ 471 (567)
.++..-+.||+..+.-
T Consensus 226 lG~aFQi~DD~lD~~g 241 (348)
T 3apz_A 226 LGLAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccC
Confidence 8888899999988754
No 37
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=52.03 E-value=69 Score=32.89 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh----------cCC-CCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHh
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFH----------AKY-VPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDW 445 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~----------~g~-vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~ 445 (567)
.+..+.++...++.+-..+..|.. .+. .||.++|+.+-..-+|..+..++ ..|. +. .+++..+.
T Consensus 133 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~ 209 (358)
T 4dhd_A 133 FAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVS--DDRGLAEA 209 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHH
Confidence 466778888889999999999862 233 67999999986655554433222 2221 11 34444333
Q ss_pred hcchhHHHHHHHHHHHHhcCCcchh
Q 008387 446 AISVPKIIRSSSLIARLDDDVHTYK 470 (567)
Q Consensus 446 ~~~~p~i~~~~~~i~RL~NDI~S~~ 470 (567)
.-.+-...++..-+.||+..+.
T Consensus 210 ---l~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 210 ---AWNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777888888899988774
No 38
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=48.29 E-value=1.8e+02 Score=29.23 Aligned_cols=84 Identities=12% Similarity=0.066 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCCCCChHHHHhhhccccchh-hHHHH--HHHhcCCccccHHHHHhhcchhHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKW-FHAKYVPTFEECVENSTMSSGYP-MLAVE--ALVGLEDMAITKRALDWAISVPKIIR 454 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W-~~~g~vPTleEYl~~~~~Ssg~~-~l~~~--~~~~mg~~~l~~e~~e~~~~~p~i~~ 454 (567)
.+..+.++...++.+-+.+..| ...+..||.++|+++-..-+|.. +.... .-+..|. +++.. .-.+-.
T Consensus 131 ~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~---~~~~~-----l~~~g~ 202 (330)
T 1wmw_A 131 VLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAGK---TPPAA-----YEEGGL 202 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTC---CCCHH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcCC---CHHHH-----HHHHHH
Confidence 5666777888899999999999 65435689999999866544444 22221 1122232 22221 355677
Q ss_pred HHHHHHHHhcCCcchh
Q 008387 455 SSSLIARLDDDVHTYK 470 (567)
Q Consensus 455 ~~~~i~RL~NDI~S~~ 470 (567)
..++..-+.||+..+.
T Consensus 203 ~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 203 RLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCccc
Confidence 7888888889888775
No 39
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=48.26 E-value=14 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHHHh
Q 008387 50 KRFETLKAEIEKLLVSNNTAWKTLEEIVAIVNQLQRL 86 (567)
Q Consensus 50 ~~~~~lk~~v~~~l~~~~~~~~~~~~~l~lID~lqrL 86 (567)
+++.=|.+|||.-|..+. +.++++.++.+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~Te----nsfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITE----NSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCT----TSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHH
Confidence 455557778888777777 889999999999875
No 40
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=46.20 E-value=1e+02 Score=30.66 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc-C-CccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL-E-DMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m-g-~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
..++.+-..+..|... .+|.++|+.+-..-+|..+... ...|. - -. .+++..+. .-++-...++..-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566777777777543 7899999999655444432222 22221 0 12 34444333 35677788888899999
Q ss_pred Ccchhhhh-hcCC---------CCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERGD---------APSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG~---------~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-|. -.+...+|- .+.|.+.+++.++++.+.++.
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKSTYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCCCHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 88875432 1222 125554442 578889999999999988776
No 41
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=46.13 E-value=87 Score=31.73 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
..++.+-..+..|... ..||.++|+.+- ..|++. +..+ ...| ++. .+++..+. .-++-...++..-+.|
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L-~~~a-~~~Ga~lag--a~~~~~~~---l~~~g~~lGlAFQI~D 251 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGEL-IKAS-IMSGAVLAE--ASEGDIKK---LEGFGYKLGLAFQIKD 251 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3466777777777543 368999999985 555543 2222 2222 122 35554433 3567777888889999
Q ss_pred CCcchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-.. .-| |. .+...+| ..+.|.+.+++.++++.+.+..
T Consensus 252 DiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 252 DILDVVGNAKDLGKNVHKDQESNKNNYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHHHCCC-----------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCCHHHhCCCcchHhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 988774321 111 22 2444443 4689999999999999988765
No 42
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=45.36 E-value=1.3e+02 Score=30.15 Aligned_cols=113 Identities=12% Similarity=0.086 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhhc-cccchhhHHHHHHHhc-CCccccHHHHHhhcchhHHHHHHHHHHHHhcCC
Q 008387 389 GLVKAYFVEAKWFHAKYVPTFEECVENST-MSSGYPMLAVEALVGL-EDMAITKRALDWAISVPKIIRSSSLIARLDDDV 466 (567)
Q Consensus 389 ~~~~a~l~EA~W~~~g~vPTleEYl~~~~-~Ssg~~~l~~~~~~~m-g~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 466 (567)
.++.+-..+..|... ..||.++|+.+-. .|++...+.+.. ..+ |.. .+++..+. .-.+-...+...-+.||+
T Consensus 159 ~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~-a~~~~~~~---l~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 159 GMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEM-VLAAQHE-VSEQIKSA---LRTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp THHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSS-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 456677777777532 3789999998854 555443332222 222 321 24444433 356777888888999998
Q ss_pred cchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 467 HTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 467 ~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
..+.-.. .-| |. .+.+.+| ..+.|.+.+.+.++++.+.+..
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 283 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKTTFATLF------NKQQLEEEIAVHYQIAMDSLRL 283 (313)
T ss_dssp HHHHCC---------------CCCHHHHS------CHHHHHHHHHHHHHHHHHTTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 112 21 2555443 4789999999999988876653
No 43
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=45.34 E-value=33 Score=34.28 Aligned_cols=108 Identities=13% Similarity=0.076 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcC-CCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 389 GLVKAYFVEAKWFHAK-YVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 389 ~~~~a~l~EA~W~~~g-~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
.++.+-..+..|...+ ..+|.++|+.+- ..|++. +..+ ...| ++. .+++..+. .-++-...++..-+.|
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L-~~~a-~~~ga~lag--~~~~~~~~---l~~~g~~lG~aFQI~D 233 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAAL-LEAS-AVLGGIIGG--GSDEEIER---LRKFARCIGLLFQVVD 233 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3556666666664321 346899999884 455544 2222 1222 122 34554433 3567778888889999
Q ss_pred CCcchhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+..+. -.+...+| ..|.|.+.+.+.++++.+.+..
T Consensus 234 DiLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 234 DILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 998876443 34555544 4678888888888888877654
No 44
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=45.05 E-value=1.3e+02 Score=29.90 Aligned_cols=113 Identities=15% Similarity=0.167 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhc
Q 008387 387 IKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 387 w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~N 464 (567)
....+.+-..+..|. +..||.++|..+-..-+|..+..+ ...| ++. .+++..+. .-++-+..++..-+.|
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a-~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~D 215 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAA-LKMGCEICE--LNNEESNQ---IYKLGLKLGLIFQIND 215 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344566666666664 346899999998544444332222 2222 122 34444332 3567778888889999
Q ss_pred CCcchhhhh-hcCCC-------CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVEQ-ERGDA-------PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E~-~rG~~-------~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-.. .-|.. .+.+.++ ..+.|.+..+++++++.+.++.
T Consensus 216 DiLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 266 (291)
T 3npk_A 216 DIIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLEK 266 (291)
T ss_dssp HHHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 998875432 22322 1333332 3688888888888888877764
No 45
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=44.10 E-value=79 Score=31.83 Aligned_cols=110 Identities=11% Similarity=0.039 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcC
Q 008387 389 GLVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDD 465 (567)
Q Consensus 389 ~~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~ND 465 (567)
.++.+-..+..|. +..||.++|+.+- ..|++. +..+ ...| ++. .+++..+ ..-.+-...+...-+.||
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L-~~~a-~~~ga~lag--a~~~~~~---~l~~~g~~lGlaFQI~DD 226 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGAL-LHYA-VQAGLILGQ--APEAQWP---AYLQFADAFGLAFQIYDD 226 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCGGGHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHH-HHHH-HHHHHHHcC--CCHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3556666666664 3468999999984 445543 2222 2222 122 3333332 235577778888889999
Q ss_pred Ccchhhhh-hcC-----CC----CchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 466 VHTYKVEQ-ERG-----DA----PSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 466 I~S~~~E~-~rG-----~~----~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
+..+.-.. .-| |. .+.+.+| ..+.|.+..+++++++.+.+..
T Consensus 227 iLD~~gd~~~~GK~~g~Dl~egK~T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 227 ILDVVSSPAEMGKATQKDADEAKNTYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHHCC-----------CTTTSSSHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCccchhhcCCccHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 88774321 111 22 2555444 3688888999999988877764
No 46
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=42.23 E-value=58 Score=32.82 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHH-HhhcchhHHHHHHHHHHHHhc
Q 008387 388 KGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRAL-DWAISVPKIIRSSSLIARLDD 464 (567)
Q Consensus 388 ~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~-e~~~~~p~i~~~~~~i~RL~N 464 (567)
..++.+-..+..|. +..||.++|+.+-..-+|..+..+ ...|. +. .+++.. +. .-.+-...+...-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~lga~lag--a~~~~~~~~---l~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISAS-LIMGLVASG--IKDEELFKW---LQAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHHC--CCCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 44566666666775 567899999988544334332222 12221 11 233333 32 3557778888889999
Q ss_pred CCcchhhh-hhcCCCC-------chhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 465 DVHTYKVE-QERGDAP-------SSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 465 DI~S~~~E-~~rG~~~-------n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
|+..+.-. ..-|... +.+.++ ..+.|.+..+++++++.+.+..
T Consensus 231 DiLD~~gd~~~~GK~~g~~~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHLDSAKNSFVNLL------GLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHC-------------CCSCHHHHH------CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHCcccccccCcchHHHHH------HHHHHHHHHHHHHHHHHHHhhh
Confidence 99887543 2233322 333222 3688889999999988877664
No 47
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=41.47 E-value=1.2e+02 Score=31.02 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhc--CCccccHHHHHhhcchhHHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGL--EDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~m--g~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.+..+.++...++.+-..+..|... .-||.++|+.+-..-+|..+... ..+|+ +. .+++..+. .-.+-+..
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~~~~~~---l~~~g~~l 216 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACA-SSIGAVLGG--ADERTADT---LEKYGYHL 216 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 4566777788899998888888653 36899999987665555443322 22221 22 35554433 35677788
Q ss_pred HHHHHHhcCCcchh
Q 008387 457 SLIARLDDDVHTYK 470 (567)
Q Consensus 457 ~~i~RL~NDI~S~~ 470 (567)
++..-+.||+..+-
T Consensus 217 G~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 217 GLAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc
Confidence 88889999988774
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=36.15 E-value=3.5e+02 Score=27.26 Aligned_cols=224 Identities=13% Similarity=0.141 Sum_probs=105.0
Q ss_pred hhHHHhhHHHHHHhhhccccccC-CHHH----HHHHHHHHHh--hhhhhhccCChhHHHHHHHHHHHHHHHHHHHhcCCC
Q 008387 304 TRKFMTKIIAIASVIDDIYDVYG-TLEE----LKLFTHAIER--WEVVAANELPKYMQVCYFALLDVVKEMEDKLVNKEP 376 (567)
Q Consensus 304 ~Rl~laK~~~l~~viDD~fD~yg-t~eE----l~~ft~ai~r--WD~~~~~~lPeymk~~~~al~~~~~ei~~~~~~g~~ 376 (567)
.|-.+.-+-.|.=..||+-|... ..++ |+.|-+.+.. |... +..|.. +.++..+-.+...+.. ++.
T Consensus 38 ~R~av~alYaf~R~aDdI~D~~~~~~~~k~~~L~~~~~~l~~~~~~~~--~~~~~~-~~ll~~~p~v~~~f~~-l~~--- 110 (343)
T 3vj8_A 38 MRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFM--ESKEKD-RQVLEDFPTISLEFRN-LAE--- 110 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTTCTTCCCC--CCCSTT-THHHHTHHHHHHHHHH-SCH---
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhcchhhhc--CCChhh-HHHHhcCcHHHHHHHH-hHH---
Confidence 34445567778888999999764 4433 3444444432 2111 111221 2222211112222210 000
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHH
Q 008387 377 LCCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 377 ~~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.......+....++.++. .+.. ..++|++|+......+.|.--..++-.++.... -++. .+ .........
T Consensus 111 -~~~~~i~~~~~~m~~gm~---~dl~-~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~-~~~~-~~---~~~~~A~~l 180 (343)
T 3vj8_A 111 -KYQTVIADICRRMGIGMA---EFLD-KHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDPL-VG---EDTERANSM 180 (343)
T ss_dssp -HHHHHHHHHHHHHHHHHH---HGGG-CCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCHH-HH---HCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH---Hhcc-CCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC-ccch-hh---hHHHHHHHH
Confidence 011112233344555553 2322 567899888888877777666655555554321 1111 11 112233344
Q ss_pred HHHHHHhcCCcchhhhhhcCCC--CchhhHHHHhcCCCHH---------HHHHHHHHHHHHHHHHHHHhhcCCCCCChh-
Q 008387 457 SLIARLDDDVHTYKVEQERGDA--PSSVECYVQQYGVSEE---------EACNKIKGMVEIEWMNINEEIQDPNHPPLQ- 524 (567)
Q Consensus 457 ~~i~RL~NDI~S~~~E~~rG~~--~n~V~cyMke~g~S~E---------eA~~~i~~~i~~~wk~ln~e~l~~~~~p~~- 524 (567)
+...-+.|=+........+|-+ +.- .|.++|++.+ .+..-+..++..+..-+.+..--...+|..
T Consensus 181 G~AlQltNilRDv~eD~~~gR~YlP~e---~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~~a~~~~~~L~~~~ 257 (343)
T 3vj8_A 181 GLFLQKTNIIRDYLEDQQGGREFWPQE---VWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIPDVITYLSRLRNQS 257 (343)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCCCSCHH---HHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHhHHHHhCCCeeCCHH---HHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 4444444444444555566654 433 3667888765 345556777777665544432212235543
Q ss_pred HHHHH---HHHhh-hhchhcccCCCCC
Q 008387 525 WLLPS---LNLAR-MMVVLYQNGDGYT 547 (567)
Q Consensus 525 ~~~~~---lN~aR-~~~~~Y~~~Dg~t 547 (567)
....+ +-+|. .+.-+|++.|-+.
T Consensus 258 ~~~~~~ip~~lA~~tL~~i~~~~~v~~ 284 (343)
T 3vj8_A 258 VFNFCAIPQVMAIATLAACYNNQQVFK 284 (343)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGGT
T ss_pred hhhHHHHHHHHHHHHHHHHHhCCcccc
Confidence 11111 23332 4455677666554
No 49
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=33.10 E-value=3.7e+02 Score=26.79 Aligned_cols=83 Identities=7% Similarity=-0.130 Sum_probs=53.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~ 455 (567)
.....+.++...++.+-..+..|.. +.-||.++|+..-..-+|..+..+ ...| ++. .+. ...-.+-..
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~-~~~ga~lag--~~~------~~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGE-CFNSDKQKYWRILEDKTAHFIEAS-LKSMAILLN--KDA------KIYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SCCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTT--SCH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHhcchHHHHHHH-HHHHHHHcC--CCH------HHHHHHHHH
Confidence 4566677788888999998988864 346899999987555444433322 2222 122 231 123456777
Q ss_pred HHHHHHHhcCCcchh
Q 008387 456 SSLIARLDDDVHTYK 470 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~ 470 (567)
.++..-+.||+..+.
T Consensus 192 lG~aFQI~DD~ld~~ 206 (315)
T 3tc1_A 192 FGMAFQIIDDLLDIT 206 (315)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhccc
Confidence 888888899887764
No 50
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=32.62 E-value=16 Score=41.82 Aligned_cols=41 Identities=29% Similarity=0.569 Sum_probs=15.8
Q ss_pred CCCCCCCccccccccCCcccchHHHHHHHHHHHHHHHHHHh
Q 008387 24 NYHPSIWGDHFINVSSNEKYTNTEVEKRFETLKAEIEKLLV 64 (567)
Q Consensus 24 ~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~~lk~~v~~~l~ 64 (567)
+|+|++|++.++.....+......+.+++++|+++||+||.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 5 EFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 68999999999985322211122457788999999999995
No 51
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=30.99 E-value=2.6e+02 Score=28.60 Aligned_cols=88 Identities=7% Similarity=-0.097 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC----CCChHHHHhhhccccchh-hH--HHHHHHhcCCccccHHHHHhhcchhH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAKY----VPTFEECVENSTMSSGYP-ML--AVEALVGLEDMAITKRALDWAISVPK 451 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g~----vPTleEYl~~~~~Ssg~~-~l--~~~~~~~mg~~~l~~e~~e~~~~~p~ 451 (567)
.+..+.+.....+.+-+.+..|...+. .+|+++|+.+-..-+|.. +. +.+.-+..|. .+++..+. .-.
T Consensus 170 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~--~~~~~~~~---l~~ 244 (367)
T 1uby_A 170 LLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI--DSKEEHEN---AKA 244 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC--CCHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC--ccHHHHHH---HHH
Confidence 466677777888999998999976543 579999999866655443 22 1222222231 24444433 356
Q ss_pred HHHHHHHHHHHhcCCcchhh
Q 008387 452 IIRSSSLIARLDDDVHTYKV 471 (567)
Q Consensus 452 i~~~~~~i~RL~NDI~S~~~ 471 (567)
+-...++..-+.||+..+.-
T Consensus 245 ~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 245 ILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 77888888899999988753
No 52
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=29.15 E-value=93 Score=31.60 Aligned_cols=87 Identities=17% Similarity=0.134 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--CCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHHhhcchhHHHHH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWFHAK--YVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRS 455 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~~~g--~vPTleEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~ 455 (567)
....+.+....++.+-..+..|.... ..||.++|+.+-..-+|..+..+...-+ ++. .+++ . ...-.+-..
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 45566777888888989899997655 5789999999866655543332221111 111 2222 1 234567888
Q ss_pred HHHHHHHhcCCcchhh
Q 008387 456 SSLIARLDDDVHTYKV 471 (567)
Q Consensus 456 ~~~i~RL~NDI~S~~~ 471 (567)
.++..-+.||+..+.-
T Consensus 206 lG~aFQi~DD~ld~~~ 221 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLKD 221 (340)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccC
Confidence 8999999999987753
No 53
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=27.88 E-value=2.3e+02 Score=28.14 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHh-cCCccccHHHHHhhcchhHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVG-LEDMAITKRALDWAISVPKIIRSS 456 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~-mg~~~l~~e~~e~~~~~p~i~~~~ 456 (567)
.....+.+.+..++.+-..+..|......||.++|+.+-..-+|..+..+...-+ ++. .++ ..-.+-...
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~--~~~-------~l~~~g~~l 181 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD--YKE-------DLKPLLNTL 181 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC--CCS-------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC--ChH-------HHHHHHHHH
Confidence 4566688888999999999999987666899999999876655543322222211 121 221 234567778
Q ss_pred HHHHHHhcCCcchh
Q 008387 457 SLIARLDDDVHTYK 470 (567)
Q Consensus 457 ~~i~RL~NDI~S~~ 470 (567)
++..-+.||+..+.
T Consensus 182 G~aFQi~DD~ld~~ 195 (301)
T 2q80_A 182 GLFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhc
Confidence 88888889887764
No 54
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=26.54 E-value=1.8e+02 Score=23.00 Aligned_cols=61 Identities=5% Similarity=0.056 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHh-hcCceeehh
Q 008387 72 TLEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLR-QHGYKVSAD 142 (567)
Q Consensus 72 ~~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR-~hGy~vS~d 142 (567)
..+..=++...+.++|+. ++|+++++..+=. ++.+. .+ ..+. ..+|.-.-.+ +.|+.++..
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~D~---d~dG~--i~-~~EF-~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLCDT---KDCGK--LS-KDQF-ALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHHCT---TCSSS--EE-TTTH-HHHHHHHHHHHTSCCCCCSS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CCCCc--CC-HHHH-HHHHHHHHHHHHcCCCCCCc
Confidence 345566777888999976 6677666544311 11111 10 2233 3333333334 789988763
No 55
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=25.59 E-value=69 Score=31.59 Aligned_cols=92 Identities=8% Similarity=0.016 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHhhh-ccccchhhHHHHHHHh--cCCccccHHHHHhhcchhHHHHHHHHHHHHhcCC
Q 008387 390 LVKAYFVEAKWFHAKYVPTFEECVENS-TMSSGYPMLAVEALVG--LEDMAITKRALDWAISVPKIIRSSSLIARLDDDV 466 (567)
Q Consensus 390 ~~~a~l~EA~W~~~g~vPTleEYl~~~-~~Ssg~~~l~~~~~~~--mg~~~l~~e~~e~~~~~p~i~~~~~~i~RL~NDI 466 (567)
++.+-..+..|... .||.++|+.+- ..|++. +..+ ...| ++. .+++..+. .-++-...++..-+.||+
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L-~~~a-~~lGailag--a~~~~~~~---l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEM-HACG-AACGAILGG--AAEEEIQK---LRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHH-HHHH-HHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHH-HHHH-HHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 45566666666433 79999999864 445443 3222 2222 122 35554433 356777888888999997
Q ss_pred cchhhhhhcCCCCchhhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 008387 467 HTYKVEQERGDAPSSVECYVQQYGVSEEEACNKIKGMVEIEWMNINE 513 (567)
Q Consensus 467 ~S~~~E~~rG~~~n~V~cyMke~g~S~EeA~~~i~~~i~~~wk~ln~ 513 (567)
.. ..|++.+.+.++.+.+-+.+..
T Consensus 222 ~~-----------------------~~~~~~~~~~~~~~~A~~~L~~ 245 (274)
T 3kra_B 222 NS-----------------------HQLIDENIIGKLKELALEELGG 245 (274)
T ss_dssp TT-----------------------SCCCCHHHHHHHHHHHHHHHTT
T ss_pred cc-----------------------ccHHHHHHHHHHHHHHHHHHHc
Confidence 11 2255566666666666666543
No 56
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.27 E-value=1.5e+02 Score=29.68 Aligned_cols=89 Identities=11% Similarity=0.065 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHhhhccccchhhHHHHHHHhcCCccccHHHHHhhcchhHHHHHHH
Q 008387 378 CCMYYAKEAIKGLVKAYFVEAKWFHAKYVPTFEECVENSTMSSGYPMLAVEALVGLEDMAITKRALDWAISVPKIIRSSS 457 (567)
Q Consensus 378 ~~~~~~k~~w~~~~~a~l~EA~W~~~g~vPTleEYl~~~~~Ssg~~~l~~~~~~~mg~~~l~~e~~e~~~~~p~i~~~~~ 457 (567)
.....+.++...++.+-..+..|... ..||.++|+.+-..-+|.....+...-++--. .+++..+. .-.+-...+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~---l~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYH---IKQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHH---HHHHHHHHH
Confidence 35667777888899999989888653 35899999998666555443332222111112 35554433 356777888
Q ss_pred HHHHHhcCCcchhh
Q 008387 458 LIARLDDDVHTYKV 471 (567)
Q Consensus 458 ~i~RL~NDI~S~~~ 471 (567)
+..-+.||+..+.-
T Consensus 205 ~afQi~DD~ld~~~ 218 (325)
T 3aqb_B 205 MSYQIIDDILDYTS 218 (325)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC
Confidence 88899999887753
No 57
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=23.08 E-value=2.6e+02 Score=28.35 Aligned_cols=88 Identities=10% Similarity=-0.008 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-----------hcCC----CCChHHHHhhhccccchh-hHH--HHHHHhcCCccccH
Q 008387 379 CMYYAKEAIKGLVKAYFVEAKWF-----------HAKY----VPTFEECVENSTMSSGYP-MLA--VEALVGLEDMAITK 440 (567)
Q Consensus 379 ~~~~~k~~w~~~~~a~l~EA~W~-----------~~g~----vPTleEYl~~~~~Ssg~~-~l~--~~~~~~mg~~~l~~ 440 (567)
.+..+.+.....+.+-..+..|. ..+. .+|.++|+.+-..-+|.. +.. .+.-+..|. .++
T Consensus 152 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~--~~~ 229 (362)
T 1yhl_A 152 LLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEA--AAS 229 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTC--GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCC--CCH
Confidence 56667777888899999898887 3223 489999999866655443 222 222222231 123
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhcCCcchhh
Q 008387 441 RALDWAISVPKIIRSSSLIARLDDDVHTYKV 471 (567)
Q Consensus 441 e~~e~~~~~p~i~~~~~~i~RL~NDI~S~~~ 471 (567)
+..+ ..-.+-...++..-+.||+..+.-
T Consensus 230 ~~~~---~l~~~g~~lG~aFQi~DD~lD~~~ 257 (362)
T 1yhl_A 230 VEMN---LVERVAHLIGEYFQVQDDVMDCFT 257 (362)
T ss_dssp SCHH---HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHhccC
Confidence 3222 235577788888899999888753
No 58
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=21.80 E-value=69 Score=25.28 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHH
Q 008387 489 YGVSEEEACNKIKGMVEIEWMNI 511 (567)
Q Consensus 489 ~g~S~EeA~~~i~~~i~~~wk~l 511 (567)
||++.+||+..+.+.+.+++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999888643
No 59
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=20.15 E-value=1.2e+02 Score=24.46 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCcccCcHHHHHHHHHHHHhhcCCCCCCCCCCCCCchHHHHHHHHHHhhcCceeehhhhc
Q 008387 73 LEEIVAIVNQLQRLGVAYHFENEIKEALQTIYDSHVNGNCDVNYDHNNDLYIVALRFRLLRQHGYKVSADIFK 145 (567)
Q Consensus 73 ~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~~~~~~~~Dl~~~al~FRlLR~hGy~vS~dvf~ 145 (567)
.+..=++...+.++|++ ++|++++++.+-. ++ .+.. ..+=...+|.-.-+.|+|+.++.+.+.
T Consensus 27 ~Is~~el~~~l~~~~l~---~~~l~~i~~~~D~---d~--dG~i--~~~EF~~~~~~~~~~~~g~~~~~~~l~ 89 (99)
T 1qjt_A 27 RVLALDAAAFLKKSGLP---DLILGKIWDLADT---DG--KGVL--SKQEFFVALRLVACAQNGLEVSLSSLS 89 (99)
T ss_dssp CCCSHHHHHHHHTSSSC---HHHHHHHHHHHCC---SS--SSSC--CSHHHHHHHHHHHHHTTTCCSSGGGCS
T ss_pred cCCHHHHHHHHHHcCCC---HHHHHHHHHHHCC---CC--CCcC--CHHHHHHHHHHHHHHHcCCCCChhhcc
Confidence 44555677778889976 6677666554421 11 1111 234456778888889999999977654
Done!