BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008389
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 241 bits (616), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 189/548 (34%), Positives = 272/548 (49%), Gaps = 45/548 (8%)
Query: 23 LW-FLDRAATVHPTRTSVVHGST----RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
LW FL+RAA + + V T R T+ + YQR RRL L +G+G VA +
Sbjct: 20 LWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLG 79
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
N EA+F VP GAVL+ N RL+ IA++L H+ V++ D L E
Sbjct: 80 FNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI--- 136
Query: 138 MEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL-QTGDPQFDWKPPQDEWQ 196
G K V+ DE G + YE+ L + DP + P E
Sbjct: 137 -----RGELKTVQHFVVMDEKAP---------EGYLAYEEALGEEADPV---RVP--ERA 177
Query: 197 SIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYT 254
+ + YT+GTT PKGVV SHR L SL+ +L+ G ++E V L +PMFH N WC
Sbjct: 178 ACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLP 237
Query: 255 WSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHV 312
++ A L G L ++ ++ GVT P V ++ + E T L +
Sbjct: 238 YA-ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADY-LESTGHRLKTL 295
Query: 313 VHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAW-KPEWDSLPPETQARMK 371
+ G+A P S++ + G V YGL+ET P V + K +SL E + +K
Sbjct: 296 RRLVVGGSAAPRSLIARFERMGVEVRQGYGLTET-SPVVVQNFVKSHLESLSEEEKLTLK 354
Query: 372 ARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFA-NG 430
A+ G+ I L +L V D + PVP DGK +GE+ + G + GY N +A +G
Sbjct: 355 AKTGLP-IPLVRLRVADEEGR-PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDG 412
Query: 431 WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490
++ TGD+ V + Y+EIKDR KD+I SGGE ISSV++EN + HP V EA+VVA +
Sbjct: 413 FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPK 472
Query: 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG-PLPKTATGKIQK 549
W E P A V P +K ++L E ++K AK + +P + VF +P+T+ GK K
Sbjct: 473 WQERPLAVVV--PRGEKPTPEELNEHLLKAGFAK---WQLPDAYVFAEEIPRTSAGKFLK 527
Query: 550 HVLRAKAK 557
LR + K
Sbjct: 528 RALREQYK 535
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 194 bits (493), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 161/537 (29%), Positives = 240/537 (44%), Gaps = 51/537 (9%)
Query: 24 WFLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
W L + ATV P + V ST R T+ Q R A L I G VA++ PN
Sbjct: 20 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 79
Query: 82 AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEK 141
+G GAV +N RL AP ++F+L S S V++ Y + + + +
Sbjct: 80 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 135
Query: 142 SNGRFKPPLLIV--IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
++ PP + IG +S + A AVE GD ++
Sbjct: 136 AD----PPGTVTDWIGADSLAERLRSAAADEPAVEC-----GGD------------DNLF 174
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+ YTSGTT PKGVV +H + + S A + L LPMFH A
Sbjct: 175 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 234
Query: 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
T I + Q A V+S I + V A P +LN + P E L P + T G
Sbjct: 235 RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP-EFAELDAPDFRYFITGG 293
Query: 320 AAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
A P +++ + K V Y L+E+ G T+ + +A M VR
Sbjct: 294 APMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR-- 351
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439
VI + GE+V+ ++++K Y P+A + F NGW+ TGD+G
Sbjct: 352 --GDDGVIREHGE----------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 399
Query: 440 KHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFV 499
+ Y+ IKDR KD+IISGGEN+ E+E+++ P V E +V+ DE+WGE A V
Sbjct: 400 IDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV 459
Query: 500 TLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAK 555
+ ++ +EQQ+ E +C ++ Y +PK ++F +P+ TGKI K VLR +
Sbjct: 460 V--ADQNEVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 176 bits (446), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 146/538 (27%), Positives = 225/538 (41%), Gaps = 53/538 (9%)
Query: 28 RAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAH 87
R A + P RT+ + R T R RLAS L + + G VAI++ N + E
Sbjct: 14 RNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELI 73
Query: 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
V + GA+L VN RLNA IAF+LG A +V++ +Y + L S G K
Sbjct: 74 GAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVL-----PSLGGVK 128
Query: 148 PPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTT 207
YA+G G+ + F P + +T+
Sbjct: 129 K----------------AYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVIIHTAAVG 172
Query: 208 ASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL 267
P+G ++S + S+ W + E V L LP+FH G +L G S+
Sbjct: 173 GRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232
Query: 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327
+ I + VT +L +I++ + + L V ++T P +
Sbjct: 233 AKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT------PETI 286
Query: 328 HAMSQKGFHVTH--TYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLD 385
+ T T+G SET G ST + R + + R + +
Sbjct: 287 ERFEATCPNATFWATFGQSETSGLSTFAPY-------------RDRPKSAGRPLFWRTVA 333
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNY 445
V+D +P+P +GEIV+ G V KGY N A + F NGW+HTGD+G D Y
Sbjct: 334 VVDAE-DRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGY 390
Query: 446 IEIKDRS--KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKP 503
+ R+ K++I +GGEN+ EVE + HPA+ +A V+ D +W E+ A KP
Sbjct: 391 LFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKP 450
Query: 504 EVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKAKEMG 560
E A+ + +F + + Y PK +VF LPK A G I + ++ + G
Sbjct: 451 -----GESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEG 503
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 233/548 (42%), Gaps = 76/548 (13%)
Query: 25 FLDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P +V R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEE 140
+ A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 121 GSGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVLSHRGA----YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK ++ R A MS V L G + V L +P++H G+
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN--VVLGLMPLYHVVGFFAVLV 216
Query: 257 LA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVH 314
A AL GT + + + + + VT A P L+++ A + + L L + H
Sbjct: 217 AALALDGTYVVIEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 315 VNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYG------PSTVCAWKPEWDSLPPET 366
V AGA P +VL + Q G V + YG +E P T P + S
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFS----- 330
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+ R+ G G+++ + A+G+ IV + + GYL P+A E
Sbjct: 331 EVRIVRIGG----GVDE-----------IVANGEEGELIVAASDSAFVGYLNQPEATAEK 375
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+GWY T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTAT 544
AD+RWG+S A V V + E A+ + FCR +++ + PK + LPK A
Sbjct: 436 ADQRWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNAL 490
Query: 545 GKIQKHVL 552
K+ + L
Sbjct: 491 NKVLRRQL 498
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 152/547 (27%), Positives = 229/547 (41%), Gaps = 74/547 (13%)
Query: 25 FLDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P +V R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEE 140
+ A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 121 GSGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVLSHRGA----YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK ++ R A MS V L G + V L +P++H G+
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN--VVLGLMPLYHVVGFFAVLV 216
Query: 257 LA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVH 314
A AL GT + + + + + VT A P L+++ A + + L L + H
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 315 VNTAGAAPPPSVLHAMSQ-------KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ 367
V AGA P +VL + Q G+ T P T P + S +
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFS-----E 331
Query: 368 ARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
R+ G G+++ + A+G+ IV + + GYL P+A E
Sbjct: 332 VRIVRIGG----GVDE-----------IVANGEEGELIVAASDSAFVGYLNQPQATAEKL 376
Query: 428 ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487
+GWY T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+ A
Sbjct: 377 QDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLA 436
Query: 488 DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTATG 545
D+RWG+S A V V + E A+ + FCR +++ + PK + LPK A
Sbjct: 437 DQRWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALN 491
Query: 546 KIQKHVL 552
K+ + L
Sbjct: 492 KVLRRQL 498
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 233/548 (42%), Gaps = 76/548 (13%)
Query: 25 FLDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P +V R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEE 140
+ A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 121 GSGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVLSHRGA----YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK ++ R A MS V L G + V L +P++H G+
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN--VVLGLMPLYHVVGFFAVLV 216
Query: 257 LA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVH 314
A AL GT + + + + + VT A P L+++ A + + L L + H
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 315 VNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYG------PSTVCAWKPEWDSLPPET 366
V AGA P +VL + Q G V + YG +E P T P + S
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKV-NAYGTTEAMNSLYMRQPKTGTEMAPGFFS----- 330
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+ R+ G G+++ + A+G+ IV + + GYL P+A E
Sbjct: 331 EVRIVRIGG----GVDE-----------IVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+GWY T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTAT 544
AD+RWG+S A V V + E A+ + FCR +++ + PK + LPK A
Sbjct: 436 ADQRWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNAL 490
Query: 545 GKIQKHVL 552
K+ + L
Sbjct: 491 NKVLRRQL 498
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 136 bits (342), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 233/548 (42%), Gaps = 76/548 (13%)
Query: 25 FLDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P +V R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEE 140
+ A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 121 GSGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVLSHRGA----YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK ++ R A MS V L G + V L +P++H G+
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN--VVLGLMPLYHVVGFFAVLV 216
Query: 257 LA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVH 314
A AL GT + + + + + VT A P L+++ A + + L L + H
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 315 VNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYG------PSTVCAWKPEWDSLPPET 366
V AGA P +VL + Q G V + YG +E P T P + S
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFS----- 330
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+ R+ G G+++ + A+G+ IV + + GYL P+A E
Sbjct: 331 EVRIVRIGG----GVDE-----------IVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+GWY T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTAT 544
AD+RWG+S A V V + E A+ + FCR +++ + PK + LPK A
Sbjct: 436 ADQRWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNAL 490
Query: 545 GKIQKHVL 552
K+ + L
Sbjct: 491 NKVLRRQL 498
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 155/548 (28%), Positives = 233/548 (42%), Gaps = 76/548 (13%)
Query: 25 FLDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82
L RAAT P +V R T + R +A+ L + VA++APN
Sbjct: 7 MLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSAD 66
Query: 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEE 140
+ A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 67 VVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV------ADAIFQS 120
Query: 141 KSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIAL 200
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 121 GSGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFI 158
Query: 201 GYTSGTTASPKGVVLSHRGA----YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS 256
YTSGTT PK ++ R A MS V L G + V L +P++H G+
Sbjct: 159 FYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHN--VVLGLMPLYHVVGFFAVLV 216
Query: 257 LA-ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVH 314
A AL GT + + + + + VT A P L+++ A + + L L + H
Sbjct: 217 AALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRH 276
Query: 315 VNTAGAAPPPSVLHAMSQK--GFHVTHTYGLSETYG------PSTVCAWKPEWDSLPPET 366
V AGA P +VL + Q G V + YG +E P T P + S
Sbjct: 277 VTFAGATMPDAVLETVHQHLPGEKV-NIYGTTEAMNSLYMRQPKTGTEMAPGFFS----- 330
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+ R+ G G+++ + A+G+ IV + + GYL P+A E
Sbjct: 331 EVRIVRIGG----GVDE-----------IVANGEEGELIVAASDSAFVGYLNQPQATAEK 375
Query: 427 FANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486
+GWY T D+ V P+ + I R D+IISGGENI E+E ++ P V E V+
Sbjct: 376 LQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVVIGL 435
Query: 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTAT 544
AD+RWG+S A V V + E A+ + FCR +++ + PK + LPK A
Sbjct: 436 ADQRWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNAL 490
Query: 545 GKIQKHVL 552
K+ + L
Sbjct: 491 NKVLRRQL 498
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 156/545 (28%), Positives = 230/545 (42%), Gaps = 72/545 (13%)
Query: 26 LDRAATVHPTR--TSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
L RAAT P +V R T + R +A+ L + VA++APN +
Sbjct: 8 LRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV 67
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLL--GHSASAVIMVDQEYFKLAEEALKIMEEK 141
A + GAV +N RL + +A L+ G +AVI V ++ A I +
Sbjct: 68 VIAILALHRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVGRQV------ADAIFQSG 121
Query: 142 SNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALG 201
S R +I +GD D + Y G P D P ++ Q +
Sbjct: 122 SGAR-----IIFLGDLVRDGEPYSY---------------GPPIED--PQREPAQPAFIF 159
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA--VYLWTLPMFHCNGWCYTWSLA- 258
YTSGTT PK ++ R A L + G+ G V L P++H G+ A
Sbjct: 160 YTSGTTGLPKAAIIPQRAAESRVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAAL 219
Query: 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE-DTILPLPHVVHVNT 317
AL GT + + + + + VT A P L+++ A + + L L + HV
Sbjct: 220 ALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTF 279
Query: 318 AGAAPPPSVLHAMSQK--GFHVTHTYGLSETYG------PSTVCAWKPEWDSLPPETQAR 369
AGA P +VL + Q G V + YG +E P T P + S + R
Sbjct: 280 AGATXPDAVLETVHQHLPGEKV-NIYGTTEAXNSLYXRQPKTGTEXAPGFFS-----EVR 333
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
+ VR G +D I A+G+ IV + + GYL P+A E +
Sbjct: 334 I-----VRIGG--GVDEI--------VANGEEGELIVAASDSAFVGYLNQPQATAEKLQD 378
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GWY T D+ V P+ + I R D IISGGENI E+E ++ P V E V+ AD+
Sbjct: 379 GWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQ 438
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCR-AKMPAYWVPKS-IVFGPLPKTATGKI 547
RWG+S A V V + E A+ + FCR +++ + PK + LPK A K+
Sbjct: 439 RWGQSVTACV-----VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKV 493
Query: 548 QKHVL 552
+ L
Sbjct: 494 LRRQL 498
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 132 bits (333), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 143/549 (26%), Positives = 237/549 (43%), Gaps = 77/549 (14%)
Query: 33 HPTRTSVVHGSTR--YTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90
H ++ +++G+ YT+ RR+AS L K I G + + P+ P A G
Sbjct: 35 HSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGA 94
Query: 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPL 150
GA++ A N +A S + +++ Y+ E +K +S+ +
Sbjct: 95 SHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYY----EKVKDFARESDVK----- 145
Query: 151 LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGD---PQFDWKPPQDEWQSIALGYTSGTT 207
++ D + D G + + + Q + PQ D P +AL Y+SGTT
Sbjct: 146 -VMCVDSAPD----------GCLHFSELTQADENEAPQVDISPDD----VVALPYSSGTT 190
Query: 208 ASPKGVVLSHRGAYLMSLSVALIWGMNEGA------VYLWTLPMFHCNGWCYTWSLAALC 261
PKGV+L+H+G L++ + G N V L LPMFH Y + LC
Sbjct: 191 GLPKGVMLTHKG--LITSVAQQVDGDNPNLYFHSEDVILCVLPMFHI----YALNSIMLC 244
Query: 262 GTSI-----CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPH---VV 313
G + + + ++ I KY V+ P V+ SI +P D H +
Sbjct: 245 GLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-----HDLSSL 299
Query: 314 HVNTAGAAPPPSVLHAMSQKGF---HVTHTYGLSETYGPSTVC-AWKPEWDSLPPETQAR 369
+ +G AP L + F + YG++E +C A+ E + P
Sbjct: 300 RMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT 359
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-A 428
+ + ++ ++D T +P + GEI + G+ +MKGYL +P+A T
Sbjct: 360 V--------VRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLNDPEATSRTIDK 409
Query: 429 NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488
GW HTGD+G D+ + I DR K++I G ++ E+E ++ HP + +A+VV D
Sbjct: 410 EGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKD 469
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYW--VPKSIVFGPLPKTATGK 546
E GE P AFV KS + Q ED +K +K ++ + + +PK +GK
Sbjct: 470 EDAGEVPVAFVV------KSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGK 523
Query: 547 IQKHVLRAK 555
I + L+ K
Sbjct: 524 ILRKNLKEK 532
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 212/524 (40%), Gaps = 55/524 (10%)
Query: 50 QTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTI 109
+ Q+ + S C + G VA++ P +P + G AG + I++ + I
Sbjct: 81 ENSQQAANVLSGAC--GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDI 138
Query: 110 AFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169
+ L S + I+ E + +E + E + R K +++ ++SCD
Sbjct: 139 LYRLQMSKAKAIVAGDE---VIQEVDTVASECPSLRIK----LLVSEKSCD--------- 182
Query: 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL 229
G + ++K L + ++ A+ +TSGT+ PK S+ L + A
Sbjct: 183 -GWLNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG 240
Query: 230 IWGMNEGAVYLWTLPMFHCNGWCYT--------WSLAALCGTSICLRQVTAKAVYSAIAK 281
G+ + +WT+ GW W+L A C L + + ++
Sbjct: 241 WTGLQASDI-MWTI---SDTGWILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSS 295
Query: 282 YGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-MSQKGFHVTHT 340
Y + AP+V ++ + + PH+ + T G + P L +Q G + +
Sbjct: 296 YPIKSMMGAPIVYRMLLQ--QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRES 353
Query: 341 YGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV--IDTRTQQPVPAD 398
YG +ET L MK + G DV ID + P
Sbjct: 354 YGQTET--------------GLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT 399
Query: 399 GKTIGEIV--MSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDII 456
IG V + + GY+ NP ++ GD G+K D Y + R+ DII
Sbjct: 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDII 459
Query: 457 ISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED 516
S G I EVEN + HPAV+E +V++ D GE AFV L + + +QL ++
Sbjct: 460 NSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE 519
Query: 517 IMKFCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAKAKEM 559
+ + ++ Y P+ I F LPKT TGKIQ+ LR K +M
Sbjct: 520 LQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 128/524 (24%), Positives = 212/524 (40%), Gaps = 55/524 (10%)
Query: 50 QTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTI 109
+ Q+ + S C + G VA++ P +P + G AG + I++ + I
Sbjct: 81 ENSQQAANVLSGAC--GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDI 138
Query: 110 AFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169
+ L S + I+ E + +E + E + R K +++ ++SCD
Sbjct: 139 LYRLQMSKAKAIVAGDE---VIQEVDTVASECPSLRIK----LLVSEKSCD--------- 182
Query: 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL 229
G + ++K L + ++ A+ +TSGT+ PK S+ L + A
Sbjct: 183 -GWLNFKKLLNEASTTHHCVETGSQ-EASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAG 240
Query: 230 IWGMNEGAVYLWTLPMFHCNGWCYT--------WSLAALCGTSICLRQVTAKAVYSAIAK 281
G+ + +WT+ GW W+L A C L + + ++
Sbjct: 241 WTGLQASDI-MWTI---SDTGWILNILCSLMEPWALGA-CTFVHLLPKFDPLVILKTLSS 295
Query: 282 YGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-MSQKGFHVTHT 340
Y + AP+V ++ + + PH+ + T G + P L +Q G + +
Sbjct: 296 YPIKSMMGAPIVYRMLLQ--QDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRES 353
Query: 341 YGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV--IDTRTQQPVPAD 398
YG +ET L MK + G DV ID + P
Sbjct: 354 YGQTET--------------GLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGT 399
Query: 399 GKTIGEIV--MSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDII 456
IG V + + GY+ NP ++ GD G+K D Y + R+ DII
Sbjct: 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDII 459
Query: 457 ISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAED 516
S G I EVEN + HPAV+E +V++ D GE AFV L + + +QL ++
Sbjct: 460 NSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKE 519
Query: 517 IMKFCRAKMPAYWVPKSIVFG-PLPKTATGKIQKHVLRAKAKEM 559
+ + ++ Y P+ I F LPKT TGKIQ+ LR K +M
Sbjct: 520 LQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWKM 563
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 122 bits (305), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 120/431 (27%), Positives = 176/431 (40%), Gaps = 44/431 (10%)
Query: 24 WFLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
W L + ATV P + V ST R T+ Q R A L I G VA++ PN
Sbjct: 6 WMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSV 65
Query: 82 AIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEK 141
+G GAV +N RL AP ++F+L S S V++ Y + + + +
Sbjct: 66 EFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVI----YGAPSAPVIDAIRAQ 121
Query: 142 SNGRFKPPLLIV--IGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
++ PP + IG +S + A AVE GD ++
Sbjct: 122 AD----PPGTVTDWIGADSLAERLRSAAADEPAVEC-----GGD------------DNLF 160
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+ YTSGTT PKGVV +H + + S A + L LPMFH A
Sbjct: 161 IMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAM 220
Query: 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
T I + Q A V+S I + V A P +LN + P E L P + T G
Sbjct: 221 RGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVP-EFAELDAPDFRYFITGG 279
Query: 320 AAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFI 379
A P +++ + K V Y L+E+ G T+ + +A M VR
Sbjct: 280 APMPEALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVR-- 337
Query: 380 GLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGV 439
VI + GE+V+ ++++K Y P+A + F NGW+ TGD+G
Sbjct: 338 --GDDGVIREHGE----------GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 385
Query: 440 KHPDNYIEIKD 450
+ Y+ IKD
Sbjct: 386 IDDEGYLYIKD 396
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 141/545 (25%), Positives = 235/545 (43%), Gaps = 65/545 (11%)
Query: 35 TRTSVVHGSTR--YTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92
T+ +++G T YT+ + R++A+ K + V ++ PN P +
Sbjct: 76 TKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASF 135
Query: 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLI 152
GA A N IA S + +I+ + Y + +K ++ +++
Sbjct: 136 RGATATAANPFFTPAEIAKQAKASNTKLIITEARYV----DKIKPLQNDDG-----VVIV 186
Query: 153 VIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFD-----WKPPQDEWQSIALGYTSGTT 207
I D P + G + + + Q+ + P D +AL Y+SGTT
Sbjct: 187 CIDDNESVP------IPEGCLRFTELTQSTTEASEVIDSVEISPDD---VVALPYSSGTT 237
Query: 208 ASPKGVVLSHRGAYLMSLSVALIWGMN------EGAVYLWTLPMFHCNGWCYTWSLAALC 261
PKGV+L+H+G L++ + G N V L LPMFH Y + LC
Sbjct: 238 GLPKGVMLTHKG--LVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI----YALNSIMLC 291
Query: 262 GTSI-----CLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN 316
G + + + + I + VT P ++ +I A S +T + V
Sbjct: 292 GLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAI--AKSSETEKYDLSSIRVV 349
Query: 317 TAGAAPPPSVLHAMSQKGF---HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+GAAP L F + YG++E GP + + P ++ A
Sbjct: 350 KSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA-GPVLAMSLGFAKEPFPVKSGACGTVV 408
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
+ ++ ++D T + + GEI + G+ +MKGYL NP A ET +GW
Sbjct: 409 RNA------EMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLNNPAATAETIDKDGWL 460
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
HTGD+G+ D+ + I DR K++I G ++ E+E ++ HP + + +VVA +E G
Sbjct: 461 HTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAG 520
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF--GPLPKTATGKIQKH 550
E P AFV KS + +L+ED +K +K ++ + VF +PK +GKI +
Sbjct: 521 EVPVAFVV------KSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRK 574
Query: 551 VLRAK 555
LRAK
Sbjct: 575 DLRAK 579
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 129/555 (23%), Positives = 229/555 (41%), Gaps = 59/555 (10%)
Query: 26 LDRAATVHPTRTSVVHGSTRY--------TWLQTYQRCRRLASALCKRSIGLGCTVAIIA 77
+D AA +T+++ ++ +L+ + ++LAS + ++ + G V +
Sbjct: 25 IDAAAEKFGEKTAIISAEPKFPSEFPESXNFLEICEVTKKLASGISRKGVRKGEHVGVCI 84
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
PN + + A +N + + +L S + ++V ++
Sbjct: 85 PNSIDYVXTIYALWRVAATPVPINPXYKSFELEHILNDSEATTLVVHSXLYE-------- 136
Query: 138 MEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQS 197
FKP +L G E + +G + +G F+ E
Sbjct: 137 -------NFKP-VLEKTGVERV------FVVGGEVNSLSEVXDSGSEDFENVKVNPEEDV 182
Query: 198 IALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSL 257
+ YT GTT PKGV L+H +L +A+ G++ + P FH +
Sbjct: 183 ALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATGLSHXDTIVGCXPXFHSAEFGLVNLX 242
Query: 258 AALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317
+ + + + I KY T A P LN +VN + V
Sbjct: 243 VTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFA 302
Query: 318 AGAAP-PPSVLHAMSQKGFHVTHTYGL--SETYGPSTVCAWKPEWDSLPPETQARMKARQ 374
GA P P+++ + + + L ++ +G + C P + PP + Q
Sbjct: 303 TGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEAC---PXVTTNPP-LRLDKSTTQ 358
Query: 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIG-----EIVMSGNVVMKGYLKNPKANEETF-- 427
GV +E L VI DG+ +G EIV+ G + KGY K K N+E +
Sbjct: 359 GVPXSDIE-LKVISLE-------DGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWY 410
Query: 428 ---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484
++ TGD+G + ++ +DR K++I G I+ E+E ++ H AV + +V+
Sbjct: 411 DEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVI 470
Query: 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTA 543
+ DE GE P AF+ LKPE ++ EDI+++ R ++ Y + + F LP+TA
Sbjct: 471 GKPDEEAGEVPKAFIVLKPEYRGKVDE---EDIIEWVRERISGYKRVREVEFVEELPRTA 527
Query: 544 TGKIQKHVLRAKAKE 558
+GK+ + +LR K E
Sbjct: 528 SGKLLRRLLREKEAE 542
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 160/356 (44%), Gaps = 33/356 (9%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
++ +TSGTT K V + R Y ++ G + +L LP++H +G
Sbjct: 167 SIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226
Query: 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVH-VNT 317
T + + A+ + + I +TH P LN ++ L P+ + +
Sbjct: 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQG-----LHEPYNLQKILL 281
Query: 318 AGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
GA +++ Q + +++G++ET S PE P+T
Sbjct: 282 GGAKLSATMIETALQYNLPIYNSFGMTET--CSQFLTATPEMLHARPDT----------- 328
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDL 437
+G+ +V D + + P + + GE+++ G VM GYL P TF NG+++TGD+
Sbjct: 329 -VGMPSANV-DVKIKNP---NKEGHGELMIKGANVMNGYLY-PTDLTGTFENGYFNTGDI 382
Query: 438 GVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497
+ Y+ I DR KD+IISGGENI ++E + P + +A V D+ WG+ P
Sbjct: 383 AEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKL 442
Query: 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVL 552
+ + ++ K+ ++ + + Y VPK LP T+TGK+Q++ L
Sbjct: 443 YFVSESDISKAQ-------LIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKL 491
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 134/542 (24%), Positives = 234/542 (43%), Gaps = 50/542 (9%)
Query: 26 LDRAATV----HPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP 81
L R TV HP +++ G + ++++ + LA+ L ++ +G G T + PN+
Sbjct: 32 LTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVA 91
Query: 82 AIYEAHFGVPMAGAV-LNAVNIRLNAPTIAFLLGHSASAVIMVDQ-EYFKLAEEALKIME 139
Y F + AG V LNA+ AF+ +I Q E F + ++
Sbjct: 92 EFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQ----FID 147
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIA 199
+ P +++++ ++ D L + + A + F T P DE
Sbjct: 148 SLHDVNLSPEIILMLNHQATDFGLLDW-IETPAETFVDFSST---------PADEVAFFQ 197
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAA 259
L + G+T +PK + +H + A I G+N L LP H +L
Sbjct: 198 L--SGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGV 255
Query: 260 L--CGTSICLRQVTAKAVYSAIAKYGVTHFCAAP--VVLNSIVNAPSEDTILPLPHVVHV 315
L G + +S I ++ V P V++ A +D I L +
Sbjct: 256 LHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLL--- 312
Query: 316 NTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
GA+ P S+ + + L + +G + D ++ ++ QG
Sbjct: 313 QVGGASFPESLARQVPE-----VLNCKLQQVFGMAEGLVNYTRLD----DSDEQIFTTQG 363
Query: 376 VRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHT 434
+++ ++D + ++ VP +G+ IG + G GY ++P+ N + F + +Y++
Sbjct: 364 RPISSDDEIKIVDEQYRE-VP-EGE-IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS 420
Query: 435 GDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGES 494
GDL + PD + + R KD I GGE I+S E+E ++ LHP V+ A++VA DE++GE
Sbjct: 421 GDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEK 480
Query: 495 PCAF-VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSI-VFGPLPKTATGKIQKHVL 552
CAF V+ PE+ L +M+ A+ Y +P I + LP TA GK+ K L
Sbjct: 481 SCAFIVSRNPELKAV---VLRRHLMELGIAQ---YKLPDQIKLIESLPLTAVGKVDKKQL 534
Query: 553 RA 554
R+
Sbjct: 535 RS 536
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/362 (26%), Positives = 156/362 (43%), Gaps = 29/362 (8%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSGTT G +LSH SL++ W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN- 316
G+ I L + +A+ T P ++ +P L H+
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPR----LTXETTGHMRL 272
Query: 317 -TAGAAPPPSVLHA--MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+G+AP + H + G V YG++ET ++ P R+
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGA 321
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
G G+ V D T +P IG I + G V GY + P+ F +G++
Sbjct: 322 VGPALPGVSA-RVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFF 378
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG Y+ I R D++I+GG N+ E+E+ + P V+E++V+ +G
Sbjct: 379 ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFG 438
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHV 551
E AFV L E S + LAE++ F ++ + +P ++F LP+ G +Q +V
Sbjct: 439 EGVTAFVVLXREFAPS--EILAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXNV 496
Query: 552 LR 553
LR
Sbjct: 497 LR 498
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 126/524 (24%), Positives = 209/524 (39%), Gaps = 45/524 (8%)
Query: 38 SVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97
+V+ G + ++ + Q LA +L ++ I G T + N+ +Y F + G
Sbjct: 43 AVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGV-- 100
Query: 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDE 157
AP +A L H S + Y E AL I + + L E
Sbjct: 101 --------APVLA-LFSHQRSEL----NAYASQIEPALLIADRQHALFSGDDFLNTFVTE 147
Query: 158 SCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKP-PQDEWQSIALGYTSGTTASPKGVVLS 216
+ ++ G + + F P P DE L + GTT +PK + +
Sbjct: 148 HSSIRVVQLLNDSGEHNLQDAINHPAEDFTATPSPADEVAYFQL--SGGTTGTPKLIPRT 205
Query: 217 HRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC--GTSICLRQVTAKA 274
H Y I + YL +P H SL GT + +A
Sbjct: 206 HNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATL 265
Query: 275 VYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM--SQ 332
+ I K+ V P ++ + A E + + G A + L A ++
Sbjct: 266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAE 325
Query: 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392
G + +G++E T ++ ++ QG +++ V D
Sbjct: 326 IGCQLQQVFGMAEGLVNYTRL----------DDSAEKIIHTQGYPMCPDDEVWVADAEGN 375
Query: 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDR 451
P+P +G ++ G +GY K+P+ N F ANG+Y +GDL P+ YI ++ R
Sbjct: 376 -PLPQ--GEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGR 432
Query: 452 SKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQ 511
KD I GGE I++ E+EN++ HPAV+ A++V+ DE GE CA++ +K E
Sbjct: 433 EKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK-------EP 485
Query: 512 QLAEDIMKFCRAK-MPAYWVPKSI-VFGPLPKTATGKIQKHVLR 553
A + +F R + + + +P + LP TA GK+ K LR
Sbjct: 486 LRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLR 529
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 176/383 (45%), Gaps = 35/383 (9%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHC 248
D + +AL +SG+T PKGV L+H S + I+G ++ G L +P H
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCYTWSLAALCGTSIC-LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
G T +CG + L + + + Y T+ P + +I+N
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTNVILVPTLF-AILNKSELLNKY 306
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPP 364
L ++V + + GA V A++++ F+ V YGL+ET ++ PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTET---TSAIIITPEGDDKPG 362
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+ + + L K VID T++ + + + GE+ + G ++MKGY+ NP+A +
Sbjct: 363 ASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATK 411
Query: 425 ETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
E GW HTGD+G + + I DR K +I G + E+E+++ HP++ +A V
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471
Query: 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP-AYWVPKSIVF-GPLPK 541
D GE P A V L +S + +++M + +++ A + + F +PK
Sbjct: 472 AGVPDPVAGELPGAVVVL-----ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPK 526
Query: 542 TATGKIQKHVLRAKAKEMGPVRK 564
TGKI +R K+ PV K
Sbjct: 527 GLTGKIDGRAIREILKK--PVAK 547
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/368 (26%), Positives = 161/368 (43%), Gaps = 32/368 (8%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSGTT KG LSH SL++ W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSKGAXLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN- 316
G+ I L + + A+ T P ++ +P L H
Sbjct: 219 LFARGSXIFLPKFDPDKILDLXAR--ATVLXGVPTFYTRLLQSPR----LTKETTGHXRL 272
Query: 317 -TAGAAPPPSVLHA--MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+G+AP + H ++ G V YG +ET ++ P R+
Sbjct: 273 FISGSAPLLADTHREWSAKTGHAVLERYGXTET-----------NXNTSNPYDGDRVPGA 321
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-GWY 432
G G+ V D T + +P IG I + G V KGY + P+ + F + G++
Sbjct: 322 VGPALPGVSAR-VTDPETGKELPR--GDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFF 378
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG Y+ I R KD++I+GG N+ E+E+ + P V+E++V+ +G
Sbjct: 379 ITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAXPGVVESAVIGVPHADFG 438
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHV 551
E A V ++ + +E Q ++ ++ + PK ++F LP+ GK+QK+V
Sbjct: 439 EGVTA-VVVRDKGATIDEAQ----VLHGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNV 493
Query: 552 LRAKAKEM 559
LR K++
Sbjct: 494 LRETYKDI 501
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 141/569 (24%), Positives = 227/569 (39%), Gaps = 107/569 (18%)
Query: 27 DRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
DRAA + R ++ G+T +++ + R RLA+ K I V + PNI +E
Sbjct: 33 DRAAK-YGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-KLAEEALKIMEEKSNGR 145
F + RL A + L H +S + YF + AE A I+ + +G
Sbjct: 92 IFAL-----------FRLGALPVFALPSHRSSEIT-----YFCEFAEAAAYIIPDAYSGF 135
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFD-WKPPQDEWQSIALGYTS 204
L + + K++ A E E+FL D + K P+ + +A S
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVA-----GEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190
Query: 205 GTTASPKGVVLSHRGAYLMSL--SVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCG 262
G + ++ Y+ SL SV + W ++ VYL LPM H Y S + G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPMAHN----YPLSSPGVLG 245
Query: 263 TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAP 322
+ VVL+ +PS D PL V P
Sbjct: 246 VL----------------------YAGGRVVLSP---SPSPDDAFPLIEREKVTITALVP 280
Query: 323 PPSV--LHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-- 378
P ++ + A S + ++ L G + A E R+KA G
Sbjct: 281 PLAMVWMDAASSRRDDLSSLQVLQ--VGGAKFSA----------EAARRVKAVFGCTLQQ 328
Query: 379 --------IGLEKLD-----VIDTRTQQPVPADGKTI-------------GEIVMSGNVV 412
+ +LD +++T+ + P D + G ++ G
Sbjct: 329 VFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYT 388
Query: 413 MKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENM 471
++GY K + N +F +G+Y TGD+ D YI ++ R+KD I GGE +++ EVEN
Sbjct: 389 IRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENH 448
Query: 472 MYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWV 530
+ HPAV +A++V+ D+ GE C F+ + E K+ E + F R + + AY +
Sbjct: 449 LLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEAPKAAE------LKAFLRERGLAAYKI 502
Query: 531 PKSIVF-GPLPKTATGKIQKHVLRAKAKE 558
P + F P+T GK+ K LR E
Sbjct: 503 PDRVEFVESFPQTGVGKVSKKALREAISE 531
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 175/383 (45%), Gaps = 35/383 (9%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHC 248
D + +AL +SG+T PKGV L+H S + I+G ++ G L +P H
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCYTWSLAALCGTSIC-LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
G T +CG + L + + + Y T P + +I+N
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPP 364
L ++V + + GA V A++++ F+ V YGL+ET ++ PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTET---TSAIIITPEGDDKPG 362
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+ + + L K VID T++ + + + GE+ + G ++MKGY+ NP+A +
Sbjct: 363 ASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATK 411
Query: 425 ETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
E GW HTGD+G + + I DR K +I G + E+E+++ HP++ +A V
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471
Query: 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP-AYWVPKSIVF-GPLPK 541
D GE P A V L +S + +++M + +++ A + + F +PK
Sbjct: 472 AGVPDPVAGELPGAVVVL-----ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPK 526
Query: 542 TATGKIQKHVLRAKAKEMGPVRK 564
TGKI +R K+ PV K
Sbjct: 527 GLTGKIDGRAIREILKK--PVAK 547
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 175/383 (45%), Gaps = 35/383 (9%)
Query: 193 DEWQSIALGY-TSGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHC 248
D + +AL +SG+T PKGV L+H S + I+G ++ G L +P H
Sbjct: 189 DRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHG 248
Query: 249 NGWCYTWSLAALCGTSIC-LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
G T +CG + L + + + Y T P + +I+N
Sbjct: 249 FGMFTTLGYL-ICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLF-AILNKSELLNKY 306
Query: 308 PLPHVVHVNTAGAAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPP 364
L ++V + + GA V A++++ F+ V YGL+ET ++ PE D P
Sbjct: 307 DLSNLVEIASGGAPLSKEVGEAVARR-FNLPGVRQGYGLTET---TSAIIITPEGDDKPG 362
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424
+ + + L K VID T++ + + + GE+ + G ++MKGY+ NP+A +
Sbjct: 363 ASG---------KVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVNNPEATK 411
Query: 425 ETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483
E GW HTGD+G + + I DR K +I G + E+E+++ HP++ +A V
Sbjct: 412 ELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGV 471
Query: 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP-AYWVPKSIVF-GPLPK 541
D GE P A V L +S + +++M + +++ A + + F +PK
Sbjct: 472 AGVPDPVAGELPGAVVVL-----ESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPK 526
Query: 542 TATGKIQKHVLRAKAKEMGPVRK 564
TGKI +R K+ PV K
Sbjct: 527 GLTGKIDGRAIREILKK--PVAK 547
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 136/559 (24%), Positives = 222/559 (39%), Gaps = 87/559 (15%)
Query: 27 DRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86
DRAA + R ++ G+T +++ + R RLA+ K I V + PNI +E
Sbjct: 33 DRAAK-YGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEV 91
Query: 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-KLAEEALKIMEEKSNGR 145
F + RL A + L H +S + YF + AE A I+ + +G
Sbjct: 92 IFAL-----------FRLGALPVFALPSHRSSEIT-----YFCEFAEAAAYIIPDAYSGF 135
Query: 146 FKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFD-WKPPQDEWQSIALGYTS 204
L + + K++ A E E+FL D + K P+ + +A S
Sbjct: 136 DYRSLARQVQSKLPTLKNIIVA-----GEAEEFLPLEDLHTEPVKLPEVKSSDVAFLQLS 190
Query: 205 GTTASPKGVVLSHRGAYLMSL--SVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCG 262
G + ++ Y+ SL SV + W ++ VYL LP H Y S + G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCW-LDHSTVYLAALPXAHN----YPLSSPGVLG 245
Query: 263 TSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAP 322
+ VVL+ +PS D PL V P
Sbjct: 246 VL----------------------YAGGRVVLSP---SPSPDDAFPLIEREKVTITALVP 280
Query: 323 PPSVL--HAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIG 380
P + + A S + ++ L + A + Q +G+ +
Sbjct: 281 PLAXVWXDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGXAEGL--VN 338
Query: 381 LEKLD-----VIDTRTQQPVPADGKTI-------------GEIVMSGNVVMKGYLKNPKA 422
+LD +++T+ + P D + G ++ G ++GY K +
Sbjct: 339 YTRLDDPEEIIVNTQGKPXSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEH 398
Query: 423 NEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481
N +F +G+Y TGD+ D YI ++ R+KD I GGE +++ EVEN + HPAV +A
Sbjct: 399 NAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDA 458
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVF-GPL 539
+ V+ D+ GE C F+ + E K+ E + F R + + AY +P + F
Sbjct: 459 AXVSXPDQFLGERSCVFIIPRDEAPKAAE------LKAFLRERGLAAYKIPDRVEFVESF 512
Query: 540 PKTATGKIQKHVLRAKAKE 558
P+T GK+ K LR E
Sbjct: 513 PQTGVGKVSKKALREAISE 531
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/557 (23%), Positives = 239/557 (42%), Gaps = 82/557 (14%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN-----IPAIYEAHFGVPMAGA 95
H T+ + ++ RLA A+ + + + + + N +P + GV +A A
Sbjct: 46 HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPA 105
Query: 96 --------VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
+LN++NI + PT+ F+ ++ V ++ L I+++
Sbjct: 106 NDIYNERELLNSMNI--SQPTVVFVSKKGLQKILNV--------QKKLPIIQK------- 148
Query: 148 PPLLIVIGDESCDPKDLK--YALGRGAVEYEKFLQTGDPQFDWKPPQ-DEWQSIALGY-T 203
I+I D D + + Y L G ++D+ P D ++IAL +
Sbjct: 149 ----IIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYDFVPESFDRDKTIALIMNS 198
Query: 204 SGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
SG+T PKGV L HR A + S + I+G + L +P H G T +
Sbjct: 199 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-I 257
Query: 261 CGTSICLRQVTAKAVY-SAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
CG + L + ++ ++ Y + P + + + D L ++ + + G
Sbjct: 258 CGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGG 316
Query: 320 AAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
A V A++++ FH + YGL+ET ++ PE D P
Sbjct: 317 APLSKEVGEAVAKR-FHLPGIRQGYGLTET---TSAILITPEGDDKPGAVG--------- 363
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA-NEETFANGWYHTG 435
+ + + V+D T + + + + GE+ + G ++M GY+ NP+A N +GW H+G
Sbjct: 364 KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
D+ D + I DR K +I G ++ E+E+++ HP + +A V D+ GE P
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 481
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
A V L + + ++I+ + +++ A + +VF +PK TGK+ +R
Sbjct: 482 AAVVVL-----EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 554 A---KAKEMGPVRKSKL 567
KAK+ G KSKL
Sbjct: 537 EILIKAKKGG---KSKL 550
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 93/362 (25%), Positives = 152/362 (41%), Gaps = 32/362 (8%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSGTT G +LSH SL++ W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN- 316
G+ I L + +A+ T P ++ +P L H+
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPR----LTXETTGHMRL 272
Query: 317 -TAGAAPPPSVLHA--MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+G+AP + H + G V YG++ET ++ P R+
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGA 321
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
G G+ V D T +P IG I + G V GY + P+ F +G++
Sbjct: 322 VGPALPGVSA-RVTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFF 378
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG Y+ I R D++I+GG N+ E+E+ + P V+E++V+ +G
Sbjct: 379 ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFG 438
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHV 551
E AFV L E S Q ++ ++ + +P ++F LP+ G +Q +V
Sbjct: 439 EGVTAFVVLXREFAPSEAQ-----VLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNV 493
Query: 552 LR 553
LR
Sbjct: 494 LR 495
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/557 (23%), Positives = 239/557 (42%), Gaps = 82/557 (14%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN-----IPAIYEAHFGVPMAGA 95
H T+ + ++ RLA A+ + + + + + N +P + GV +A A
Sbjct: 46 HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPA 105
Query: 96 --------VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
+LN++NI + PT+ F+ ++ V ++ L I+++
Sbjct: 106 NDIYNERELLNSMNI--SQPTVVFVSKKGLQKILNV--------QKKLPIIQK------- 148
Query: 148 PPLLIVIGDESCDPKDLK--YALGRGAVEYEKFLQTGDPQFDWKPPQ-DEWQSIALGY-T 203
I+I D D + + Y L G ++D+ P D ++IAL +
Sbjct: 149 ----IIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYDFVPESFDRDKTIALIMNS 198
Query: 204 SGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
SG+T PKGV L HR A + S + I+G + L +P H G T +
Sbjct: 199 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-I 257
Query: 261 CGTSICLRQVTAKAVY-SAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
CG + L + ++ ++ Y + P + + + D L ++ + + G
Sbjct: 258 CGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGG 316
Query: 320 AAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
A V A++++ FH + YGL+ET ++ PE D P
Sbjct: 317 APLSKEVGEAVAKR-FHLPGIRQGYGLTET---TSAILITPEGDDKPGAVG--------- 363
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA-NEETFANGWYHTG 435
+ + + V+D T + + + + GE+ + G ++M GY+ NP+A N +GW H+G
Sbjct: 364 KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 421
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
D+ D + I DR K +I G ++ E+E+++ HP + +A V D+ GE P
Sbjct: 422 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 481
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
A V L + + ++I+ + +++ A + +VF +PK TGK+ +R
Sbjct: 482 AAVVVL-----EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 536
Query: 554 A---KAKEMGPVRKSKL 567
KAK+ G KSKL
Sbjct: 537 EILIKAKKGG---KSKL 550
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 156/368 (42%), Gaps = 26/368 (7%)
Query: 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWC 252
D+ + YTSGTT PKG V+ R ++A W V + LP+FH +G
Sbjct: 153 DDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212
Query: 253 YTWSLAALCGTSICLRQVTAKAVYSAIAKY--GVTHFCAAPVVLNSIVNA-PSEDTILPL 309
G S+ R + + A + G T P + + I P++ +
Sbjct: 213 LGILGPLRRGGSV--RHLGRFSTEGAARELNDGATMLFGVPTMYHRIAETLPADPELAKA 270
Query: 310 PHVVHVNTAGAAPPPSVLHAM--SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQ 367
+ +G+A P H + G V YG++ET ++V A D P
Sbjct: 271 LAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRA-----DGEP---- 321
Query: 368 ARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF 427
GV G+E L +++ DG+++GEI + G + YL P A F
Sbjct: 322 --RAGTVGVPLPGVE-LRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAF 378
Query: 428 A-NGWYHTGDLGVKHPDNYIEIKDR-SKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485
+G++ TGD+ V+ PD Y+ I R + D+I SGG I + E+EN + HP V EA+V
Sbjct: 379 TEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTG 438
Query: 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTAT 544
D GE A++ LA+ + A++ + P+ + + +P+
Sbjct: 439 EPDPDLGERIVAWIVPADPAAPPALGTLADHVA----ARLAPHKRPRVVRYLDAVPRNDM 494
Query: 545 GKIQKHVL 552
GKI K L
Sbjct: 495 GKIMKRAL 502
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 132/557 (23%), Positives = 239/557 (42%), Gaps = 82/557 (14%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN-----IPAIYEAHFGVPMAGA 95
H T+ + ++ RLA A+ + + + + + N +P + GV +A A
Sbjct: 51 HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPA 110
Query: 96 --------VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
+LN++NI + PT+ F+ ++ V ++ L I+++
Sbjct: 111 NDIYNERELLNSMNI--SQPTVVFVSKKGLQKILNV--------QKKLPIIQK------- 153
Query: 148 PPLLIVIGDESCDPKDLK--YALGRGAVEYEKFLQTGDPQFDWKPPQ-DEWQSIALGY-T 203
I+I D D + + Y L G ++D+ P D ++IAL +
Sbjct: 154 ----IIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYDFVPESFDRDKTIALIMNS 203
Query: 204 SGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
SG+T PKGV L HR A + S + I+G + L +P H G T +
Sbjct: 204 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYL-I 262
Query: 261 CGTSICLRQVTAKAVY-SAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
CG + L + ++ ++ Y + P + + + D L ++ + + G
Sbjct: 263 CGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-YDLSNLHEIASGG 321
Query: 320 AAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGV 376
A V A++++ FH + YGL+ET ++ PE D P
Sbjct: 322 APLSKEVGEAVAKR-FHLPGIRQGYGLTET---TSAILITPEGDDKPGAVG--------- 368
Query: 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA-NEETFANGWYHTG 435
+ + + V+D T + + + + GE+ + G ++M GY+ NP+A N +GW H+G
Sbjct: 369 KVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSG 426
Query: 436 DLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495
D+ D + I DR K +I G ++ E+E+++ HP + +A V D+ GE P
Sbjct: 427 DIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELP 486
Query: 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYWVPKSIVF-GPLPKTATGKIQKHVLR 553
A V L + + ++I+ + +++ A + +VF +PK TGK+ +R
Sbjct: 487 AAVVVL-----EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIR 541
Query: 554 A---KAKEMGPVRKSKL 567
KAK+ G KSKL
Sbjct: 542 EILIKAKKGG---KSKL 555
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 140/532 (26%), Positives = 217/532 (40%), Gaps = 67/532 (12%)
Query: 42 GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVN 101
GST Y L+ +R RR ASAL + + ++ + A+ A G AG V N
Sbjct: 47 GSTTYGELE--ERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVAN 104
Query: 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEK------SNGRFKPPLLIVIG 155
L ++L HS + ++ + +AL+ E S R P L +
Sbjct: 105 TLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAEHDGCQLIVSQPRESEPRLAPLF 164
Query: 156 DESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVL 215
+E D + F W Y+SG+T PKG V
Sbjct: 165 EELIDAAAPAAKAAATGCDDIAF----------------WL-----YSSGSTGKPKGTVH 203
Query: 216 SHRGAY-LMSLSVALIWGMNEGAVYLWTLPMFHC----NGWCYTWSLAALCGTSICL-RQ 269
+H Y L I G+ E V +F NG + S+ A T+I + +
Sbjct: 204 THANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVGA---TAILMAER 260
Query: 270 VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHV---NTAGAAPPPSV 326
TA A+++ + ++ T F P + +++ +P+ LP V + +AG A P +
Sbjct: 261 PTADAIFARLVEHRPTVFYGVPTLYANMLVSPN----LPARADVAIRICTSAGEALPREI 316
Query: 327 LHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDV 386
G T +G G + + + L A G G E
Sbjct: 317 -------GERFTAHFGCEILDG---IGSTEMLHIFLSNRAGAVEYGTTGRPVPGYE---- 362
Query: 387 IDTRTQ--QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDN 444
I+ R + VP DG+ +G++ + G Y N + + TF W +GD + P+
Sbjct: 363 IELRDEAGHAVP-DGE-VGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNG 420
Query: 445 YIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPE 504
RS D++ G+ +S VEVE ++ H AVLEA+VV D AFV LK E
Sbjct: 421 CYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVG-VDHGGLVKTRAFVVLKRE 479
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAK 555
S + LAE++ F + ++ + P+ IVF LPKTATGKIQ+ LR +
Sbjct: 480 FAPS--EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 128/556 (23%), Positives = 235/556 (42%), Gaps = 80/556 (14%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN-----IPAIYEAHFGVPMAGA 95
H T+ + ++ RLA A+ + + + + + N +P + GV +A A
Sbjct: 51 HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPA 110
Query: 96 --------VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFK 147
+LN++NI + PT+ F+ ++ V ++ L I+++
Sbjct: 111 NDCYNERELLNSMNI--SQPTVVFVSKKGLQKILNV--------QKKLPIIQK------- 153
Query: 148 PPLLIVIGDESCDPKDLK--YALGRGAVEYEKFLQTGDPQFDWKPPQ-DEWQSIALGY-T 203
I+I D D + + Y L G ++D+ P D ++IAL +
Sbjct: 154 ----IIIMDSKTDYQGFQSMYTF------VTSHLPPGFNEYDFVPESFDRDKTIALIMNS 203
Query: 204 SGTTASPKGVVLSHRG-AYLMSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYTWSLAAL 260
SG+T PKGV L HR A S + I+G + L +P H G T
Sbjct: 204 SGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLIS 263
Query: 261 CGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGA 320
+ + + + ++ Y + P + + + + D L ++ + + GA
Sbjct: 264 GFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDK-YDLSNLHEIASGGA 322
Query: 321 APPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR 377
V A++++ FH + YGL+ET ++ P+ D P +
Sbjct: 323 PLSKEVGEAVAKR-FHLPGIRQGYGLTET---TSAILITPKGDDKPGAVG---------K 369
Query: 378 FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKA-NEETFANGWYHTGD 436
+ + V+D T + + + + GE+ + G ++M GY+ NP+A N +GW H+GD
Sbjct: 370 VVPFFEAKVVDLDTGKTLGVNQR--GELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGD 427
Query: 437 LGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPC 496
+ D + I DR K +I G ++ E+E+++ HP + +A V D+ GE P
Sbjct: 428 IAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPA 487
Query: 497 AFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYWVPKSIVF-GPLPKTATGKIQKHVLRA 554
A V L + + ++I+ + +++ A + +VF +PK TGK+ +R
Sbjct: 488 AVVVL-----EHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIRE 542
Query: 555 ---KAKEMGPVRKSKL 567
KAK+ G KSKL
Sbjct: 543 ILIKAKKGG---KSKL 555
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 111/408 (27%), Positives = 174/408 (42%), Gaps = 46/408 (11%)
Query: 170 RGAVEYEKFLQTGDPQFDWKPPQD---EWQSIALGY-TSGTTASPKGVVLSHRGAY-LMS 224
G +++ K L+ P F+ +P + + + I L Y +SGT PK ++ H Y L
Sbjct: 197 EGWIDFRKELEESSPIFE-RPTGEVSTKNEDICLVYFSSGTAGFPK--MVEHDNTYPLGH 253
Query: 225 LSVALIWGMNEGAVYLWTLPMFHCNGW-------CYTWSLAALCGTSICLRQVTAKAVYS 277
+ A W E +T+ +GW Y +A + AK +
Sbjct: 254 ILTAKYWQNVEDDGLHYTVA---DSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLE 310
Query: 278 AIAKYGVTHFCAAPVVLNSIVNAP-SEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-KGF 335
+KYGVT FCA P + ++ S L + V AG P V + + G
Sbjct: 311 KASKYGVTTFCAPPTIYRFLIKEDLSHYNFSTLKYAV---VAGEPLNPEVFNRFLEFTGI 367
Query: 336 HVTHTYGLSETYGPSTVCAW---KPEWDSLP-PETQARMKARQG-VRFIGLEKLDVIDTR 390
+ +G +ET W KP P P + + R G + +G E VI+T
Sbjct: 368 KLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINT- 426
Query: 391 TQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKD 450
+GK +G V G K+P+ EET+ +G+YHTGD+ D Y+
Sbjct: 427 ------MEGKPVGLFVHYG--------KDPERTEETWHDGYYHTGDMAWMDEDGYLWFVG 472
Query: 451 RSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE 510
R+ DII + G + EVE+ + HPAVLE ++ D G+ A + L + S+
Sbjct: 473 RADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSD- 531
Query: 511 QQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557
L ++ + Y P+ I F P LPKT +GKI++ +R K +
Sbjct: 532 -SLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 32/362 (8%)
Query: 199 ALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258
A+ YTSGTT G +LSH SL++ W V + LP++H +G ++
Sbjct: 159 AILYTSGTTGRSXGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218
Query: 259 ALC-GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVN- 316
G+ I L + +A+ T P ++ +P L H+
Sbjct: 219 LFARGSMIFLPXFDPDXILDLMAR--ATVLMGVPTFYTRLLQSPR----LTXETTGHMRL 272
Query: 317 -TAGAAPPPSVLHA--MSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKAR 373
+G+AP + H + G V YG++ET ++ P R+
Sbjct: 273 FISGSAPLLADTHREWSAXTGHAVLERYGMTET-----------NMNTSNPYDGDRVPGA 321
Query: 374 QGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWY 432
G G+ V D T +P IG I + G V GY + P+ F +G++
Sbjct: 322 VGPALPGVSAR-VTDPETGXELPR--GDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFF 378
Query: 433 HTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492
TGDLG Y+ I R D++I+GG N+ E+E+ + P V+E++V+ +G
Sbjct: 379 ITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAMPGVVESAVIGVPHADFG 438
Query: 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHV 551
E A V ++ +E Q ++ ++ + +P ++F LP+ G +Q +V
Sbjct: 439 EGVTA-VVVRDXGATIDEAQ----VLHGLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXNV 493
Query: 552 LR 553
LR
Sbjct: 494 LR 495
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 130/560 (23%), Positives = 228/560 (40%), Gaps = 90/560 (16%)
Query: 41 HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100
H T+ + ++ RLA + + +GL +A+ + N F +P+ GA+ V
Sbjct: 80 HAEVNITYSEYFEMACRLAETMKRYGLGLQHHIAVCSEN-----SLQFFMPVCGALFIGV 134
Query: 101 NI----------------RLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
+ ++ PTI F + ++ V ++ L I+++
Sbjct: 135 GVAPTNDIYNERELYNSLSISQPTIVFCSKRALQKILGV--------QKKLPIIQK---- 182
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPP--QDEWQSIALGY 202
++I+ E K Y+ E L G ++D+ P E + +
Sbjct: 183 -----IVILDSREDYMGKQSMYSF------IESHLPAGFNEYDYIPDSFDRETATALIMN 231
Query: 203 TSGTTASPKGVVLSHRGAYL-MSLSVALIWG--MNEGAVYLWTLPMFHCNGWCYTWSLAA 259
+SG+T PKGV L+H+ + S ++G + L +P H G T
Sbjct: 232 SSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLT 291
Query: 260 LCGTSICLRQVTAKAVY-SAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
CG I L + ++ ++ Y + P + + + D L ++ + +
Sbjct: 292 -CGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLVDK-YDLSNLHEIASG 349
Query: 319 GAAPPPSVLHAMSQKGFH---VTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQG 375
GA V A++++ F + YGL+ET ++ P P ++
Sbjct: 350 GAPLAKEVGEAVAKR-FKLPGIRQGYGLTET---TSAIIITPRGRDDKPGACGKV----- 400
Query: 376 VRFIGLEKLDVIDTRTQQPVPADGKTIG-----EIVMSGNVVMKGYLKNPKANEETF-AN 429
V F + +D +DT GKT+G E+ + G ++MKGY+ NP+A +
Sbjct: 401 VPFFSAKIVD-LDT---------GKTLGVNQRGELCVKGPMIMKGYVNNPEATSALIDKD 450
Query: 430 GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
GW H+GD+ D Y I DR K +I G + E+E+++ HP + +A V D
Sbjct: 451 GWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESILLQHPFIFDAGVAGIPDP 510
Query: 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV--FGPLPKTATGKI 547
GE P A V L E K+ +Q ++M + ++ A + V +PK TGKI
Sbjct: 511 DAGELPAAVVVL--EEGKTMTEQ---EVMDYVAGQVTASKRLRGGVKFVDEVPKGLTGKI 565
Query: 548 QKHVLRAKAKEMGPVRKSKL 567
+R + MG +KSKL
Sbjct: 566 DARKIR-EILMMG--KKSKL 582
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 126/545 (23%), Positives = 212/545 (38%), Gaps = 75/545 (13%)
Query: 24 WFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI 83
WF A +P ++ + ++ + + R+A L K G G VA+ +
Sbjct: 469 WF-KEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLEL 527
Query: 84 YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSN 143
GV AGA V+ +L I+++L SA+A ++ QE M+E++
Sbjct: 528 VIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQE-----------MKEQAA 576
Query: 144 GRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYT 203
+ I D++ +E+ Q DP P + + YT
Sbjct: 577 ELPYTGTTLFIDDQT---------------RFEE--QASDPATAIDPNDPAY----IMYT 615
Query: 204 SGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGT 263
SGTT PKG + +H A + L + + ++ + + + + + + L
Sbjct: 616 SGTTGKPKGNITTH--ANIQGLVKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAA 673
Query: 264 SICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAG 319
+ + + + + I + V A + N + +A ED + L ++
Sbjct: 674 RLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDA-GEDWMKGLRCILFGGERA 732
Query: 320 AAPPPSVLHAMSQKGFHVTHTYGLSETYGPS--TVCAWKPEWDSLPPETQARMKARQGVR 377
+ P H +K + L YGP+ TV A LP + +
Sbjct: 733 SVP-----HV--RKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKP--- 782
Query: 378 FIGLEKLDVIDTRTQ-QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG------ 430
I + +++ ++Q QP A +GE+ +SG V KGY+ +E F
Sbjct: 783 -ISNASVYILNEQSQLQPFGA----VGELCISGMGVSKGYVNRADLTKEKFIENPFKPGE 837
Query: 431 -WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489
Y TGDL PD IE R D + G I E+E + +P V +A VVA E
Sbjct: 838 TLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHE 897
Query: 490 RWGESPCAFVTLKPEVDKSNEQQL-AEDIMKFCRAKMPAYWVPKSIVF-GPLPKTATGKI 547
S A++ N QL AED+ + ++PAY VP++ F LP T GK+
Sbjct: 898 SGDASINAYLV--------NRTQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKV 949
Query: 548 QKHVL 552
K +L
Sbjct: 950 NKRLL 954
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 156/377 (41%), Gaps = 58/377 (15%)
Query: 202 YTSGTTASPKGVVLSHR---GAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW-CYTWSL 257
+TSG+T PKGV+ HR G YL +G +E V+L P+ W + L
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYLGQDYAG--FGPDE--VFLQCSPV----SWDAFGLEL 272
Query: 258 -AALCGTSICLRQVTAK----AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHV 312
AL + C+ Q + +A++GVT + + N +V+ E V
Sbjct: 273 FGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----AFEGV 328
Query: 313 VHVNTAGAAPPPSVLHAMSQKGFH----VTHTYGLSETYGPST---VCAWKPEWDSLPPE 365
+ T G P SV H + H + + YG +E+ G +T V A +LP
Sbjct: 329 RYAITGGE--PASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTALP-- 384
Query: 366 TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEE 425
GV G ++ V+D + PA +GE+ ++G + GY+ P E
Sbjct: 385 --------IGVPLAG-KRAYVLDDDLK---PAANGALGELYVAGAGLAHGYVSRPALTAE 432
Query: 426 TF---------ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476
F Y TGDL + D +E R+ D + G + EVE + HP
Sbjct: 433 RFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHP 492
Query: 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV- 535
AV +A+V+A+ D R G+ + D + A ++ + +PAY VP V
Sbjct: 493 AVRQAAVLAQ-DSRLGDKQLVAYVVAERADAPPD---AAELRRHVAEALPAYMVPVECVP 548
Query: 536 FGPLPKTATGKIQKHVL 552
LP+T GK+ + L
Sbjct: 549 VDELPRTPNGKLDRRAL 565
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 131/591 (22%), Positives = 234/591 (39%), Gaps = 87/591 (14%)
Query: 26 LDRAATVHPTRTSVVHGSTR------YTWLQTYQRCRRLASALCKRSIGL--GCTVAIIA 77
+DR A P + +++ T+ + + ++A L S+G+ G TVA+
Sbjct: 88 VDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLT-YSMGVRKGDTVAVYM 146
Query: 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKI 137
P +P + GA+ + V ++ ++ + S V++ E + K+
Sbjct: 147 PMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDE----SNRGGKV 202
Query: 138 MEEK----SNGRFKPPLLIVIGDESCD--------PKDLKYALGRGAVEYEKFLQTGDPQ 185
+E K R P + V+ + P+DL +A + +Y+ +
Sbjct: 203 IETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKK--KYKTYYPC---- 256
Query: 186 FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMS--LSVALIWGMNEGAVYLWTL 243
P D + L YTSG+T +PKGV S G YL+ L++ + ++ V+
Sbjct: 257 ----TPVDSEDPLFLLYTSGSTGAPKGVQHSTAG-YLLGALLTMRYTFDTHQEDVFFTAG 311
Query: 244 PMFHCNGWCYTWSLAALCGTSICLRQVT-AKAVYSA----IAKYGVTHFCAAPVVLNSIV 298
+ G Y L G + + + T A YS I ++ VT F AP L +
Sbjct: 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLK 371
Query: 299 NAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSETYG--- 348
A D+ + + + G+ P + + + TY +E+
Sbjct: 372 RA--GDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLV 429
Query: 349 ---PSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV-PADGKTIGE 404
V KP S P F G++ + V+D T + + + + +
Sbjct: 430 TPLAGGVTPMKPGSASFP--------------FFGIDAV-VLDPNTGEELNTSHAEGVLA 474
Query: 405 IVMSGNVVMKGYLKNPKANEETFAN---GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGE 461
+ + + KN +T+ N G+Y TGD K D YI I R D++ G
Sbjct: 475 VKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGH 534
Query: 462 NISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNE-----QQLAED 516
+S+ E+E + P V E +VV D+ G++ AFV LK + S Q + +
Sbjct: 535 RLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKH 594
Query: 517 IMKFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLR----AKAKEMGPV 562
++ R + + PK I+ LPKT +GKI + +LR ++ ++G V
Sbjct: 595 LVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGESDQLGDV 645
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 127/579 (21%), Positives = 224/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPNVT-------SVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+A P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ R ++ P + + LPKT +GKI + +LR A
Sbjct: 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/554 (19%), Positives = 207/554 (37%), Gaps = 100/554 (18%)
Query: 25 FLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84
+ + P ++V + + T+ + + +LA ++ IG V I+ ++
Sbjct: 44 LFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF 103
Query: 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNG 144
V AG ++I I ++L S + +++ + L I + NG
Sbjct: 104 IGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHL------IHNIQFNG 157
Query: 145 RFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTS 204
+ E + +K G + P + YTS
Sbjct: 158 QV----------EIFEEDTIKIREGT----------------NLHVPSKSTDLAYVIYTS 191
Query: 205 GTTASPKGVVLSHRGAYLMSLSVALIWGMN---EGAVYLWTLPMFHCNGWCYTWSLAALC 261
GTT +PKG +L H+G + +L V +N + + + F + W +A L
Sbjct: 192 GTTGNPKGTMLEHKG--ISNLKVFFENSLNVTEKDRIGQFASISFDASVW--EMFMALLT 247
Query: 262 GTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLP--HVVHVN--- 316
G S+ + I K + F +N E T++ LP +VVH++
Sbjct: 248 GASLYI-----------ILKDTINDFVKFEQYINQ-----KEITVITLPPTYVVHLDPER 291
Query: 317 --------TAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCA--WKPEWDSLPPET 366
TAG+A PS+++ +K ++ + YG +ET T+CA W +++
Sbjct: 292 ILSIQTLITAGSATSPSLVNKWKEKVTYI-NAYGPTET----TICATTWVATKETIGHSV 346
Query: 367 QARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEET 426
+ ++ ++D Q + GE+ + G + +GY K P+ +
Sbjct: 347 PIGAPIQNT-------QIYIVDENLQLKSVGEA---GELCIGGEGLARGYWKRPELTSQK 396
Query: 427 FANG-------WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479
F + Y TGD D IE R + + G + EVE+++ H +
Sbjct: 397 FVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYIS 456
Query: 480 EASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV-FGP 538
E +V D + CA+ + + E + +F ++P Y +P +
Sbjct: 457 ETAVSVHKDHQEQPYLCAYFVSEKHIP-------LEQLRQFSSEELPTYMIPSYFIQLDK 509
Query: 539 LPKTATGKIQKHVL 552
+P T+ GKI + L
Sbjct: 510 MPLTSNGKIDRKQL 523
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 126/579 (21%), Positives = 223/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPN-------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+ P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ R ++ P + + LPKT +GKI + +LR A
Sbjct: 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 126/579 (21%), Positives = 223/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPN-------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+ P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ R ++ P + + LPKT +GKI + +LR A
Sbjct: 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 121/564 (21%), Positives = 225/564 (39%), Gaps = 59/564 (10%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ E + A ++ + +
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADEGVR-AGASIPLKK 200
Query: 140 EKSNGRFKPPL-----LIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDE 194
+ P + +IV+ D + + GR + + ++ P+ + E
Sbjct: 201 NVDDALKNPNVTSVEHVIVLKRTGSD---IDWQEGRD-LWWRDLIEKASPEHQPEAMNAE 256
Query: 195 WQSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGAVYLWTLPMFHCNGWC 252
+ + YTSG+T PKGV L G YL+ + + ++ + G +Y T + G
Sbjct: 257 -DPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHS 314
Query: 253 YTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL 307
Y CG T++ V T + + K+ V AP + +++ D +
Sbjct: 315 YLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALM--AEGDKAI 372
Query: 308 PLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSETYGPSTVCAWKPEWD 360
+ G+ P A + ++ V T+ +ET G
Sbjct: 373 EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMIT-------- 424
Query: 361 SLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN------VVM 413
P +KA R F G++ ++D P +G T G +V++ + +
Sbjct: 425 --PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGNLVITDSWPGQARTLF 478
Query: 414 KGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473
+ + + TF N Y +GD + D Y I R D++ G + + E+E+ +
Sbjct: 479 GDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV 537
Query: 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS 533
HP + EA+VV G++ A+VTL + S E L ++ + R ++ P
Sbjct: 538 AHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVRNWVRKEIGPLATPDV 595
Query: 534 IVF-GPLPKTATGKIQKHVLRAKA 556
+ + LPKT +GKI + +LR A
Sbjct: 596 LHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 125/579 (21%), Positives = 222/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPN-------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+ P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ R ++ P + + LPKT +G I + +LR A
Sbjct: 581 NWVRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILRKIA 619
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 125/579 (21%), Positives = 222/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPN-------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+ P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ ++ P + + LPKT +GKI + +LR A
Sbjct: 581 NWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 125/579 (21%), Positives = 222/579 (38%), Gaps = 89/579 (15%)
Query: 26 LDRAATVHPTRTSVV------HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN 79
LDR + RT+++ S ++ + ++ R A+ L I G VAI P
Sbjct: 82 LDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPM 141
Query: 80 IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIME 139
+P A GAV + + + +A + S+S +++ A+E ++
Sbjct: 142 VPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT-------ADEGVRA-- 192
Query: 140 EKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEW---- 195
GR PL + D +P +VE+ L+ DW+ +D W
Sbjct: 193 ----GR-SIPLKKNVDDALKNPN-------VTSVEHVIVLKRTGSDIDWQEGRDLWWRDL 240
Query: 196 ----------------QSIALGYTSGTTASPKGVVLSHRGAYLM--SLSVALIWGMNEGA 237
+ + YTSG+T PKGV L G YL+ + + ++ + G
Sbjct: 241 IEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGV-LHTTGGYLVYAATTFKYVFDYHPGD 299
Query: 238 VYLWTLPMFHCNGWCYTWSLAALCG-TSICLRQV----TAKAVYSAIAKYGVTHFCAAPV 292
+Y T + G Y CG T++ V T + + K+ V AP
Sbjct: 300 IYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPT 359
Query: 293 VLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA-------MSQKGFHVTHTYGLSE 345
+ +++ D + + G+ P A + ++ V T+ +E
Sbjct: 360 AIRALM--AEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTE 417
Query: 346 TYGPSTVCAWKPEWDSLPPETQARMKARQGVR-FIGLEKLDVIDTRTQQPVPADGKTIGE 404
T G P +KA R F G++ ++D P +G T G
Sbjct: 418 TGGFMIT----------PLPGAIELKAGSATRPFFGVQPA-LVDNEGH---PQEGATEGN 463
Query: 405 IVMSGN------VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS 458
+V++ + + + + + TF N Y +GD + D Y I R D++
Sbjct: 464 LVITDSWPGQARTLFGDHERFEQTYFSTFKN-MYFSGDGARRDEDGYYWITGRVDDVLNV 522
Query: 459 GGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIM 518
G + + E+E+ + HP + EA+VV G++ A+VTL + S E L ++
Sbjct: 523 SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE--LYAEVR 580
Query: 519 KFCRAKMPAYWVPKSIVF-GPLPKTATGKIQKHVLRAKA 556
+ ++ P + + LPKT +GKI + +LR A
Sbjct: 581 NWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIA 619
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 99/377 (26%), Positives = 155/377 (41%), Gaps = 37/377 (9%)
Query: 192 QDEW----QSIALGYTSGTTASPKGVVLSHRGAYLMSLS--VALIWGMNEGAVYLWTLPM 245
QD+W ++ + YTSG+T +PKGV +S A L S + + + ++ G ++L P
Sbjct: 136 QDQWVKEHETFYIIYTSGSTGNPKGVQIS--AANLQSFTDWICADFPVSGGKIFLNQAPF 193
Query: 246 FHCNGWCYTWSLAALCGTSICLRQVTA---KAVYSAIAKYGVTHFCAAPVVLNSIVNAPS 302
+ GT C+ + K ++ + K G+ + + P + + P
Sbjct: 194 SFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG 253
Query: 303 EDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPS--TVCAWKPEWD 360
L LPH G P SV A+ ++ F + TYGP+ TV E
Sbjct: 254 FSQDL-LPHADTFMFCGEVLPVSVAKALLER-FPKAKIFN---TYGPTEATVAVTSVEIT 308
Query: 361 SLPPETQARMKARQGVRFIGLEKLDV---IDTRTQQPVPADGKTIGEIVMSGNVVMKGYL 417
+ + +R +G K D+ I QP+P K GEIV++G V +GYL
Sbjct: 309 N-------DVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYL 359
Query: 418 KNPKANEETF---ANGW-YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY 473
P+ E+ F W Y TGD G D I + R I G + E+E +
Sbjct: 360 GEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVR 418
Query: 474 LHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKS 533
V A V+ E A + + E + E QL I K A +PAY +P+
Sbjct: 419 QSQYVRSAVVIPYQPNGTVEYLIAAI-VPEEHEFEKEFQLTSAIKKELAASLPAYMIPRK 477
Query: 534 IVFGP-LPKTATGKIQK 549
++ + TA GKI +
Sbjct: 478 FIYQDHIQMTANGKIDR 494
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 95/387 (24%), Positives = 156/387 (40%), Gaps = 68/387 (17%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAV------YLWTLPMFHCNGWCYTW 255
+TSGTT PKGV +SH L+S + W + + A + P + + W
Sbjct: 152 FTSGTTGQPKGVQISHDN--LLSFTN---WMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206
Query: 256 S-LAALCGTSICL-RQVTA--KAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPLP 310
+ AL GT L +++ A K +++ IA+ V + + P + + S+D +P
Sbjct: 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFAD--MAMLSDDFCQAKMP 264
Query: 311 HVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARM 370
+ H G + + ++K F + + YGP+ E +
Sbjct: 265 ALTHFYFDGE----ELTVSTARKLFERFPSAKIINAYGPT--------------EATVAL 306
Query: 371 KARQGVRFIGLEKLDVIDTRTQQPV------------PADGKTI-----GEIVMSGNVVM 413
A + R +++D T+ P+ DGK + GEI+++G V
Sbjct: 307 SAIEITR-------EMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVS 359
Query: 414 KGYLKNPKANEETF----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469
KGYL NP+ E F YHTGD+G DN + R I G I +V
Sbjct: 360 KGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVS 419
Query: 470 NMMYLHPAVLEASVVARAD-ERWGESPCAFVTLKPEVDK--SNEQQLAEDIMKFCRAKMP 526
+ P V A V R + E ++ A++ +K V + E +L + I + M
Sbjct: 420 QQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMM 479
Query: 527 AYWVPKSIVF-GPLPKTATGKIQKHVL 552
+Y +P ++ LP T GKI L
Sbjct: 480 SYMMPSKFLYRDSLPLTPNGKIDIKTL 506
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 387 IDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYI 446
I+ R + P + +G I +SG + GY + + +E A GW TGDLG D Y+
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLGYLL-DGYL 453
Query: 447 EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA--RADERWGESPCAFVTLKPE 504
+ R KD+II G NI ++E + P + +A A E+ + L+ +
Sbjct: 454 YVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEK--------IILQIQ 505
Query: 505 VDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP---LPKTATGK 546
S+E++ + I + V +I P +P+T++GK
Sbjct: 506 CRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGK 550
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 200 LGYTSGTTASPKGVVLSHR--GAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250
L YTSG+T P+GV+++HR A L ++S I + G + LP +H G
Sbjct: 180 LQYTSGSTRFPRGVIITHREVXANLRAISHDGI-KLRPGDRCVSWLPFYHDXG 231
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 90/383 (23%), Positives = 142/383 (37%), Gaps = 72/383 (18%)
Query: 200 LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPM-------------- 245
L YTSG+T +PKGV +S L S S A WG G V +L +
Sbjct: 180 LLYTSGSTGTPKGVRVSRHN--LSSFSDA--WGKLIGNVAPKSLELGGVGKFLCLASRAF 235
Query: 246 -FHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED 304
H W LC + R + + GVTH P +L+ P ED
Sbjct: 236 DVHIGEXFLAWRFG-LCAVT-GERLSXLDDLPRTFRELGVTHAGIVPSLLDQTGLVP-ED 292
Query: 305 TILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPP 364
PH+V++ G P +Q+ + + L YGP+ V
Sbjct: 293 A----PHLVYLGVGGEKXTP-----RTQQIWSSSDRVALVNVYGPTEVTIGC-------- 335
Query: 365 ETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI-----GEIVMSGNVVMKGYLKN 419
+ R+ R IG + D+ P + + GE+V+ G++V GYL
Sbjct: 336 -SAGRILPDSDTRCIGHP---LGDSVAHVLAPGSNEHVKKGXAGELVIEGSLVANGYLNR 391
Query: 420 PKANEETFANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENI-------------- 463
P A NG Y TGD+ D+ I R + + G+ +
Sbjct: 392 PDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSP 451
Query: 464 SSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA 523
+ ++V ++ HP + +V+ + S A V + N +++ + + C
Sbjct: 452 TDIDVVTLLLNHPGTSKQFLVS-----FVASSGAAVRGELRWINENYKEINNSLRQACEQ 506
Query: 524 KMPAYWVPKSIV---FGPLPKTA 543
+PAY VP I+ F PL T+
Sbjct: 507 TLPAYXVPDFIIPISFIPLRDTS 529
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 144/375 (38%), Gaps = 53/375 (14%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT-WSLAAL 260
YTSGTT +PKGV + H + ++ + +L +FH + ++ W +
Sbjct: 182 YTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWL----LFHSLSFDFSVWEIWGA 237
Query: 261 CGTSICLRQV------TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED--TILPLPHV 312
T L + T + + I GVT P ++ A + L +V
Sbjct: 238 FSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDVSGLRYV 297
Query: 313 VHVNTAGAAP---PPSVLHAMSQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQAR 369
+ AP P + + + + + YG++ET +T + + R
Sbjct: 298 IFGGEKLTAPMLRPWAKAFGLDRP--RLVNGYGITETTVFTTFEEITEAYLAQDASIIGR 355
Query: 370 MKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN 429
G R +G + DV A G+T GE+ +SG + +GYL+ P+ E F
Sbjct: 356 ALPSFGTRVVGDDGRDV----------APGET-GELWLSGAQLAEGYLRRPELTAEKFPE 404
Query: 430 ----------GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVL 479
+Y TGDL + PD + R+ I G I ++E + H V+
Sbjct: 405 VTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKLRGYRIELSDIETAVRRHDDVV 464
Query: 480 EASVVAR----ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIV 535
+A V R D R CA+V + A ++ + +PAY P +
Sbjct: 465 DAVVTVREFKPGDLRL---VCAYVA------REGSATTARELRNHIKTLLPAYMHPARYL 515
Query: 536 FGP-LPKTATGKIQK 549
P LP+T GK+ +
Sbjct: 516 PLPGLPRTVNGKVDR 530
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 28/192 (14%)
Query: 381 LEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG---------W 431
++++ +ID T +P D +GEI + N V KGY P+ FA +
Sbjct: 380 IQEVKIIDPDTL--IPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIY 437
Query: 432 YHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMY---LHPAVLEASVVARAD 488
TGDLG H +N + + R KD+II G+N ++E + LH + + + +
Sbjct: 438 LRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLXHSPLHHVLGKCAAFVIQE 496
Query: 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK----SIVFGPL---PK 541
E + +T+ EV +A+D + F Y + +IV PL P
Sbjct: 497 EHEYK-----LTVXCEVKNRFXDDVAQDNL-FNEIFELVYENHQLEVHTIVLIPLKAXPH 550
Query: 542 TATGKIQKHVLR 553
T +GKI+++ R
Sbjct: 551 TTSGKIRRNFCR 562
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 23/133 (17%)
Query: 129 KLAEEALKIMEEKSNGRFKPPLLIVIGDE---------SCDPKDLKY-ALGRGAVEYEKF 178
KL ++A +I+ KP +++ I D + +PK LK A+ ++E +
Sbjct: 102 KLLDKAQRIVTNS-----KPVIVLXIADHIKKFTADELNTNPKFLKIPAIALESIELNR- 155
Query: 179 LQTGDPQFDWKPPQDEWQSIA-LGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGA 237
W+P + IA L YTSG+T PKGV +SH + + N+
Sbjct: 156 ------SSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHNLLDNLNKIFTSFHXNDET 209
Query: 238 VYLWTLPMFHCNG 250
+ LP H G
Sbjct: 210 IIFSWLPPHHDXG 222
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 109/281 (38%), Gaps = 61/281 (21%)
Query: 202 YTSGTTASPKGVVLSHR---GAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWS-- 256
+TSG+T PKGV+ HR G YL +G +E V+L P+ +W
Sbjct: 221 FTSGSTGRPKGVMSPHRALTGTYLGQDYAG--FGPDE--VFLQCSPV--------SWDAF 268
Query: 257 ----LAALCGTSICLRQVTAK----AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILP 308
AL + C+ Q + +A++GVT + + N +V+ E
Sbjct: 269 GLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE----A 324
Query: 309 LPHVVHVNTAGAAPPPSVLHAMSQKGFH----VTHTYGLSETYGPST---VCAWKPEWDS 361
V + T G P SV H + H + + YG +E+ G +T V A +
Sbjct: 325 FEGVRYAITGGE--PASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDLSGTA 382
Query: 362 LPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPK 421
LP GV G ++ V+D + PA +GE+ ++G + GY+ P
Sbjct: 383 LP----------IGVPLAG-KRAYVLDDDLK---PAANGALGELYVAGAGLAHGYVSRPA 428
Query: 422 ANEETF---------ANGWYHTGDLGVKHPDNYIEIKDRSK 453
E F Y TGDL + D +E R+
Sbjct: 429 LTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRAD 469
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 148/375 (39%), Gaps = 45/375 (12%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSG+T +PKGV +++ + + + G V+L P +
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 262 GTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
GT + + K +++++ + + + + P + S + LP++
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFC 269
Query: 319 GAAPPPSVLHAMSQKGFHVT--HTYGLSE----TYGPSTVCAWKPEWDSLPPETQARMKA 372
G P V + ++ T +TYG +E G ++ SLP
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP--------- 320
Query: 373 RQGVRFIGLEKLD--VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF--- 427
+G K D ++ + + DG+ GEIV+ G V GYL +P+ E+ F
Sbjct: 321 ------VGYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 428 -ANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS-GGENISSVEVENMM----YLHPAVLEA 481
Y TGD G + +N + + D I G + E+E+ + Y+ AV+
Sbjct: 374 DGERAYKTGDAG--YVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI-- 429
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLP 540
V + E++ V + +K E +L I K ++P Y +P+ ++ +P
Sbjct: 430 -VPIKKGEKYDYLLAVVVPGEHSFEK--EFKLTSAIKKELNERLPNYMIPRKFMYQSSIP 486
Query: 541 KTATGKIQKHVLRAK 555
T GK+ + L ++
Sbjct: 487 MTPNGKVDRKKLLSE 501
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 79/375 (21%), Positives = 148/375 (39%), Gaps = 45/375 (12%)
Query: 202 YTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALC 261
YTSG+T +PKGV +++ + + + G V+L P +
Sbjct: 151 YTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTG 210
Query: 262 GTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTA 318
GT + + K +++++ + + + + P + S + LP++
Sbjct: 211 GTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFC 269
Query: 319 GAAPPPSVLHAMSQKGFHVT--HTYGLSE----TYGPSTVCAWKPEWDSLPPETQARMKA 372
G P V + ++ T +TYG +E G ++ SLP
Sbjct: 270 GEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLP--------- 320
Query: 373 RQGVRFIGLEKLD--VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF--- 427
+G K D ++ + + DG+ GEIV+ G V GYL +P+ E+ F
Sbjct: 321 ------VGYCKSDCRLLIMKEDGTIAPDGEK-GEIVIVGPSVSVGYLGSPELTEKAFTMI 373
Query: 428 -ANGWYHTGDLGVKHPDNYIEIKDRSKDIIIS-GGENISSVEVENMM----YLHPAVLEA 481
Y TGD G + +N + + D I G + E+E+ + Y+ AV+
Sbjct: 374 DGERAYKTGDAG--YVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI-- 429
Query: 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVF-GPLP 540
V + E++ V + +K E +L I K ++P Y +P+ ++ +P
Sbjct: 430 -VPIKKGEKYDYLLAVVVPGEHSFEK--EFKLTSAIKKELNERLPNYMIPRKFMYQSSIP 486
Query: 541 KTATGKIQKHVLRAK 555
T GK+ + L ++
Sbjct: 487 MTPNGKVDRKKLLSE 501
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 9/67 (13%)
Query: 192 QDEWQSIA-LGYTSGTTASPKGVVLSHRGA-----YLMSLSVALIWGM--NEGAVYLWTL 243
+DE+ S A L YTSG+T +P GVV+SH+ LMS A G+ A+ W L
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW-L 237
Query: 244 PMFHCNG 250
P +H G
Sbjct: 238 PFYHDMG 244
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG------------WYH 433
++D+ T P DG T+GEI + G+ V GY + P +E TF W
Sbjct: 406 IVDSDTCIECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 434 TGDLG 438
TGD G
Sbjct: 464 TGDSG 468
>pdb|3E53|A Chain A, Crystal Structure Of N-Terminal Domain Of A Fatty Acyl Amp
Ligase Faal28 From Mycobacterium Tuberculosis
Length = 480
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 386 VIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG------------WYH 433
++D+ T P DG T+GEI + G+ V GY + P +E TF W
Sbjct: 406 IVDSDTCIECP-DG-TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLR 463
Query: 434 TGDLG 438
TGD G
Sbjct: 464 TGDSG 468
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 192 QDEWQSIA-LGYTSGTTASPKGVVLSHR 218
+DE+ S A L YTSG+T +P GVV SH+
Sbjct: 179 EDEYPSTAYLQYTSGSTRTPAGVVXSHQ 206
>pdb|1SFP|A Chain A, Crystal Structure Of Acidic Seminal Fluid Protein (Asfp)
At 1.9 A Resolution: A Bovine Polypeptide From The
Spermadhesin Family
Length = 114
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 347 YGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIV 406
YGP T C W + +PPE R+ + E L++ID PV GK +
Sbjct: 25 YGPKTNCVWTIQ---MPPEYHVRVSIQYLQLNCNKESLEIIDGLPGSPV--LGKICEGSL 79
Query: 407 M----SGNVVMKGYLKNPK 421
M SG+++ Y++ P+
Sbjct: 80 MDYRSSGSIMTVKYIREPE 98
>pdb|3QE7|A Chain A, Crystal Structure Of Uracil Transporter--Uraa
Length = 429
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 402 IGEIVMSGNVVMKGYLKNPKANEETFANG 430
+G +V++ N+V K L++P + FANG
Sbjct: 243 VGHLVVTANIVKKDLLRDPGLHRSMFANG 271
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 88 FGVPMA-GAVLNAVNIRLNAPTIAFLLGHSASAVI 121
F VPM GA+ + IR PTI +L+ H A ++
Sbjct: 22 FNVPMEQGAITDDTRIRAALPTIRYLIEHGAKVIL 56
>pdb|4AB5|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr) A Lysr
Family Regulator From N. Meningitidis
pdb|4AB5|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr) A Lysr
Family Regulator From N. Meningitidis
Length = 222
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 186 FDWKPP-----QDEWQSIALGYTSGTTASPKGVVLSHRG 219
FDW P + W + L SG A P G++L HR
Sbjct: 20 FDWLXPAXGEFRPXWPQVELDIVSGFQADPVGLLLQHRA 58
>pdb|3QE5|A Chain A, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
pdb|3QE5|B Chain B, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
Length = 516
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 418 KNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477
KN +++ +T G+Y+ D +P+ +E++ I + G ++ V V+N L A
Sbjct: 216 KNDRSSADTIQKGFYYVDD----YPEEALELRQDLVKITDANGNEVTGVSVDNYTNLEAA 271
>pdb|4AB6|A Chain A, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
pdb|4AB6|B Chain B, Regulatory Domain Structure Of Nmb2055 (Metr), C103s C106s
Mutant, A Lysr Family Regulator From N. Meningitidis
Length = 222
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 186 FDWKPP-----QDEWQSIALGYTSGTTASPKGVVLSHRG 219
FDW P + W + L SG A P G++L HR
Sbjct: 20 FDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRA 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,296,391
Number of Sequences: 62578
Number of extensions: 729498
Number of successful extensions: 1742
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1548
Number of HSP's gapped (non-prelim): 121
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)