Query 008389
Match_columns 567
No_of_seqs 183 out of 1433
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 01:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008389.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008389hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 1.1E-81 3.8E-86 661.6 42.0 511 13-563 12-547 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 2.6E-80 8.7E-85 649.3 48.0 510 13-558 14-535 (536)
3 3r44_A Fatty acyl COA syntheta 100.0 3.1E-80 1E-84 645.3 45.6 504 13-560 9-515 (517)
4 1v25_A Long-chain-fatty-acid-C 100.0 6.4E-81 2.2E-85 654.1 35.9 512 18-559 16-537 (541)
5 3rix_A Luciferase, luciferin 4 100.0 4.8E-81 1.7E-85 656.8 33.5 520 12-567 12-550 (550)
6 1mdb_A 2,3-dihydroxybenzoate-A 100.0 4.1E-79 1.4E-83 640.1 46.9 500 17-559 22-532 (539)
7 3etc_A AMP-binding protein; ad 100.0 9.7E-79 3.3E-83 641.0 47.8 504 19-558 54-579 (580)
8 2d1s_A Luciferase, luciferin 4 100.0 7.8E-79 2.7E-83 638.9 45.3 503 20-559 25-544 (548)
9 4fuq_A Malonyl COA synthetase; 100.0 7.2E-79 2.5E-83 632.8 44.4 491 24-559 4-501 (503)
10 3ivr_A Putative long-chain-fat 100.0 1.7E-80 6E-85 647.1 31.8 501 16-564 2-507 (509)
11 3o83_A Peptide arylation enzym 100.0 1.1E-79 3.7E-84 645.2 35.3 504 17-560 27-542 (544)
12 3fce_A D-alanine--poly(phospho 100.0 2.9E-78 9.9E-83 630.9 45.8 499 20-564 1-510 (512)
13 3e7w_A D-alanine--poly(phospho 100.0 2.3E-78 8E-83 631.0 44.4 500 20-566 1-511 (511)
14 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.9E-77 6.4E-82 623.1 46.3 483 20-557 2-503 (504)
15 1pg4_A Acetyl-COA synthetase; 100.0 2.2E-77 7.5E-82 639.3 46.7 513 21-559 77-622 (652)
16 3c5e_A Acyl-coenzyme A synthet 100.0 3.8E-77 1.3E-81 628.1 45.5 503 20-559 37-563 (570)
17 1ry2_A Acetyl-coenzyme A synth 100.0 4.4E-77 1.5E-81 637.1 46.2 516 21-559 83-638 (663)
18 1amu_A GRSA, gramicidin synthe 100.0 2.1E-76 7.2E-81 621.5 43.1 479 19-556 38-527 (563)
19 3l8c_A D-alanine--poly(phospho 100.0 6.4E-76 2.2E-80 614.8 45.1 498 19-561 3-515 (521)
20 3rg2_A Enterobactin synthase c 100.0 1.6E-75 5.4E-80 622.5 48.6 501 15-559 22-535 (617)
21 2v7b_A Benzoate-coenzyme A lig 100.0 6.7E-76 2.3E-80 615.6 43.8 500 19-554 22-528 (529)
22 3ipl_A 2-succinylbenzoate--COA 100.0 2.1E-76 7.1E-81 615.5 39.5 496 20-559 1-498 (501)
23 4gr5_A Non-ribosomal peptide s 100.0 7.1E-77 2.4E-81 627.4 33.8 481 19-555 74-568 (570)
24 4dg8_A PA1221; ANL superfamily 100.0 5.4E-75 1.8E-79 615.5 39.2 480 15-559 22-514 (620)
25 3tsy_A Fusion protein 4-coumar 100.0 1E-75 3.5E-80 655.9 34.8 513 19-561 60-585 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 7.7E-75 2.6E-79 602.4 30.6 475 19-554 21-504 (505)
27 3ite_A SIDN siderophore synthe 100.0 2.8E-73 9.5E-78 600.2 32.9 500 13-560 13-545 (562)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.3E-72 4.5E-77 599.5 37.3 508 16-562 7-571 (590)
29 3gqw_A Fatty acid AMP ligase; 100.0 2.9E-71 9.9E-76 588.0 37.6 502 18-562 19-567 (576)
30 2vsq_A Surfactin synthetase su 100.0 5.4E-71 1.8E-75 632.5 35.0 492 10-556 454-958 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3.8E-59 1.3E-63 483.7 25.6 409 8-451 12-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 2.5E-53 8.5E-58 419.7 21.1 315 194-559 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 7.4E-48 2.5E-52 393.1 21.3 329 192-551 82-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 1.6E-47 5.4E-52 391.5 21.0 330 192-553 89-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 2.2E-47 7.6E-52 389.7 20.7 328 191-551 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 3.7E-30 1.3E-34 256.3 13.2 236 192-461 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.5 2.3E-14 8E-19 114.3 8.8 96 450-549 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 4.5E-14 1.5E-18 112.4 8.7 96 450-550 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.9 1.3E-08 4.6E-13 103.8 13.9 89 395-502 393-493 (609)
40 4epl_A Jasmonic acid-amido syn 98.8 3.4E-08 1.2E-12 100.4 12.2 90 395-503 388-489 (581)
41 4eql_A 4-substituted benzoates 98.8 2.9E-08 9.7E-13 101.3 11.4 59 401-475 385-447 (581)
42 2y27_A Phenylacetate-coenzyme 91.7 0.98 3.4E-05 44.8 11.0 101 33-134 88-199 (437)
43 2y4o_A Phenylacetate-coenzyme 91.2 1.1 3.9E-05 44.5 10.8 89 44-133 110-200 (443)
44 3qov_A Phenylacetate-coenzyme 91.2 1 3.5E-05 44.7 10.4 99 35-134 86-195 (436)
45 3ipl_A 2-succinylbenzoate--COA 79.5 12 0.00039 37.7 11.2 97 32-132 160-266 (501)
46 1mdb_A 2,3-dihydroxybenzoate-A 79.0 20 0.00067 36.4 12.8 97 33-133 180-288 (539)
47 3o83_A Peptide arylation enzym 77.6 18 0.00063 36.7 12.1 97 33-133 189-297 (544)
48 2d1s_A Luciferase, luciferin 4 77.4 7.8 0.00027 39.6 9.2 96 35-132 192-298 (548)
49 3hgu_A EHPF; phenazine, antibi 77.3 4.9 0.00017 38.6 7.3 86 44-131 109-219 (369)
50 4gs5_A Acyl-COA synthetase (AM 74.2 10 0.00036 36.1 8.6 102 21-131 26-137 (358)
51 3r44_A Fatty acyl COA syntheta 73.7 24 0.00081 35.6 11.7 96 33-133 168-274 (517)
52 3rix_A Luciferase, luciferin 4 71.8 21 0.00073 36.3 10.9 85 213-298 49-137 (550)
53 3kxw_A Saframycin MX1 syntheta 71.3 16 0.00054 37.6 9.9 98 32-132 164-275 (590)
54 3rg2_A Enterobactin synthase c 70.6 26 0.00088 36.3 11.3 97 33-133 182-290 (617)
55 3fce_A D-alanine--poly(phospho 68.7 11 0.00039 37.9 7.9 95 33-130 142-248 (512)
56 3g7s_A Long-chain-fatty-acid-- 68.3 51 0.0017 33.4 12.8 102 194-298 33-139 (549)
57 3ni2_A 4-coumarate:COA ligase; 67.6 38 0.0013 34.2 11.7 84 213-297 48-135 (536)
58 3ivr_A Putative long-chain-fat 67.2 44 0.0015 33.4 12.0 83 213-296 30-116 (509)
59 3e7w_A D-alanine--poly(phospho 65.5 14 0.00049 37.1 7.9 95 33-130 141-247 (511)
60 1v25_A Long-chain-fatty-acid-C 65.3 67 0.0023 32.4 13.0 85 212-297 45-133 (541)
61 3t5a_A Long-chain-fatty-acid-- 64.1 43 0.0015 33.1 11.1 92 32-127 180-291 (480)
62 3tbh_A O-acetyl serine sulfhyd 62.7 53 0.0018 30.8 10.7 91 34-126 34-127 (334)
63 1t5h_X 4-chlorobenzoyl COA lig 59.4 87 0.003 31.2 12.4 84 213-297 28-117 (504)
64 3nyq_A Malonyl-COA ligase; A/B 59.4 34 0.0012 34.3 9.3 97 32-133 152-259 (505)
65 2v7b_A Benzoate-coenzyme A lig 57.0 52 0.0018 33.1 10.3 84 213-297 47-134 (529)
66 1amu_A GRSA, gramicidin synthe 56.7 98 0.0033 31.4 12.4 84 213-297 63-150 (563)
67 3etc_A AMP-binding protein; ad 56.4 81 0.0028 32.2 11.8 95 193-292 69-167 (580)
68 1pg4_A Acetyl-COA synthetase; 54.2 1.1E+02 0.0036 31.8 12.4 95 194-292 90-188 (652)
69 4dg8_A PA1221; ANL superfamily 51.0 47 0.0016 34.3 8.9 96 33-132 162-268 (620)
70 4fuq_A Malonyl COA synthetase; 50.8 67 0.0023 32.0 9.9 79 214-293 28-110 (503)
71 3tsy_A Fusion protein 4-coumar 50.6 62 0.0021 35.6 10.3 95 193-295 74-172 (979)
72 3c5e_A Acyl-coenzyme A synthet 50.0 83 0.0028 32.0 10.6 85 212-297 71-160 (570)
73 3vc3_A Beta-cyanoalnine syntha 49.3 58 0.002 30.7 8.5 95 31-126 46-142 (344)
74 2pqm_A Cysteine synthase; OASS 47.7 97 0.0033 29.1 9.8 89 35-126 42-133 (343)
75 4gr5_A Non-ribosomal peptide s 47.7 1.2E+02 0.0041 30.7 11.4 80 214-294 100-183 (570)
76 2zzt_A Putative uncharacterize 47.3 87 0.003 23.4 8.4 63 465-527 12-74 (107)
77 3ezx_A MMCP 1, monomethylamine 47.2 87 0.003 27.1 8.7 89 237-329 93-194 (215)
78 1ry2_A Acetyl-coenzyme A synth 44.5 1.1E+02 0.0037 31.9 10.5 95 194-292 96-195 (663)
79 4eez_A Alcohol dehydrogenase 1 44.2 1.3E+02 0.0044 28.1 10.2 79 44-125 135-216 (348)
80 3gqw_A Fatty acid AMP ligase; 41.4 1.3E+02 0.0044 30.4 10.5 85 213-298 48-143 (576)
81 2q3b_A Cysteine synthase A; py 40.5 2E+02 0.007 26.3 10.8 89 35-126 31-122 (313)
82 2egu_A Cysteine synthase; O-ac 39.9 2.2E+02 0.0075 26.0 10.9 89 35-126 29-120 (308)
83 4h1h_A LMO1638 protein; MCCF-l 39.6 84 0.0029 29.3 7.8 15 66-80 8-22 (327)
84 3l8c_A D-alanine--poly(phospho 38.3 1.1E+02 0.0037 30.6 9.1 79 213-292 28-110 (521)
85 1z7w_A Cysteine synthase; tran 38.2 2.4E+02 0.0081 26.0 10.9 90 35-126 30-122 (322)
86 3sr3_A Microcin immunity prote 37.3 96 0.0033 29.0 7.8 15 66-80 9-23 (336)
87 4aec_A Cysteine synthase, mito 36.9 2.2E+02 0.0077 27.6 10.6 63 63-125 166-229 (430)
88 1ve1_A O-acetylserine sulfhydr 36.9 2.4E+02 0.0083 25.6 11.0 63 63-126 52-117 (304)
89 3tla_A MCCF; serine protease, 36.1 1E+02 0.0035 29.4 7.8 60 66-125 39-117 (371)
90 3dzz_A Putative pyridoxal 5'-p 35.0 2.5E+02 0.0086 26.2 10.9 55 67-124 106-167 (391)
91 3byp_A CZRB protein; membrane 34.1 98 0.0034 22.2 6.0 64 464-527 11-76 (94)
92 3ite_A SIDN siderophore synthe 32.2 71 0.0024 32.4 6.6 86 44-129 193-284 (562)
93 4e5s_A MCCFLIKE protein (BA_56 32.0 1.1E+02 0.0038 28.5 7.3 16 66-81 8-23 (331)
94 3l6b_A Serine racemase; pyrido 31.8 1.2E+02 0.0041 28.5 7.6 59 70-129 76-134 (346)
95 2v03_A Cysteine synthase B; py 29.9 3.2E+02 0.011 24.8 10.9 89 35-126 25-116 (303)
96 3ju7_A Putative PLP-dependent 29.8 1E+02 0.0034 29.3 6.9 59 62-123 70-135 (377)
97 4h27_A L-serine dehydratase/L- 29.6 1.7E+02 0.0059 27.6 8.4 57 75-131 97-153 (364)
98 2jtq_A Phage shock protein E; 29.2 1.2E+02 0.004 21.2 5.6 46 44-96 22-67 (85)
99 3pc3_A CG1753, isoform A; CBS, 28.4 1.9E+02 0.0065 29.0 8.9 61 64-125 106-167 (527)
100 2cvi_A 75AA long hypothetical 28.2 1.1E+02 0.0036 21.4 5.1 47 465-526 15-61 (83)
101 3ri6_A O-acetylhomoserine sulf 27.7 2E+02 0.0068 27.9 8.7 56 74-129 100-158 (430)
102 3jv7_A ADH-A; dehydrogenase, n 27.3 2.7E+02 0.0091 25.8 9.4 78 46-126 143-225 (345)
103 1y80_A Predicted cobalamin bin 27.2 2.5E+02 0.0086 23.8 8.4 96 44-139 55-164 (210)
104 3op7_A Aminotransferase class 26.6 2.7E+02 0.0092 25.9 9.4 54 67-124 102-161 (375)
105 3ss7_X D-serine dehydratase; t 26.5 2.6E+02 0.009 27.2 9.3 100 35-134 101-223 (442)
106 1h2b_A Alcohol dehydrogenase; 26.4 2E+02 0.0067 27.0 8.2 80 44-126 153-240 (359)
107 3goh_A Alcohol dehydrogenase, 25.8 1.5E+02 0.0051 27.1 7.2 74 44-122 114-190 (315)
108 3dwg_A Cysteine synthase B; su 25.8 3.9E+02 0.013 24.5 10.4 63 63-126 65-128 (325)
109 1eg5_A Aminotransferase; PLP-d 25.5 2.3E+02 0.0079 26.3 8.7 11 68-78 87-97 (384)
110 3nra_A Aspartate aminotransfer 24.9 4.3E+02 0.015 24.7 13.2 24 207-230 258-281 (407)
111 1mdo_A ARNB aminotransferase; 24.4 1.8E+02 0.0061 27.4 7.7 54 66-123 75-133 (393)
112 2cf5_A Atccad5, CAD, cinnamyl 24.4 1.9E+02 0.0064 27.1 7.7 79 44-125 151-233 (357)
113 3two_A Mannitol dehydrogenase; 24.3 1.9E+02 0.0064 26.9 7.7 75 44-122 148-225 (348)
114 3s2e_A Zinc-containing alcohol 24.2 1.8E+02 0.0063 26.9 7.5 79 44-126 138-219 (340)
115 3ist_A Glutamate racemase; str 24.0 3.3E+02 0.011 24.4 8.7 56 25-84 20-81 (269)
116 3b8x_A WBDK, pyridoxamine 5-ph 24.0 3.8E+02 0.013 25.0 10.0 54 66-123 76-134 (390)
117 3h90_A Ferrous-iron efflux pum 23.7 1.4E+02 0.0047 27.0 6.3 64 464-527 207-270 (283)
118 3tqh_A Quinone oxidoreductase; 23.7 1.7E+02 0.0058 26.9 7.1 77 44-125 124-204 (321)
119 1d2f_A MALY protein; aminotran 23.5 4.3E+02 0.015 24.6 10.3 54 67-123 108-168 (390)
120 3ijw_A Aminoglycoside N3-acety 23.2 59 0.002 29.3 3.5 24 56-79 18-41 (268)
121 2rkb_A Serine dehydratase-like 23.1 2.4E+02 0.008 25.9 7.9 60 70-130 54-113 (318)
122 4eb5_A Probable cysteine desul 22.9 1.8E+02 0.0061 27.2 7.3 33 92-124 86-119 (382)
123 1c7n_A Cystalysin; transferase 22.8 3.9E+02 0.013 25.0 9.8 53 68-123 111-170 (399)
124 1o69_A Aminotransferase; struc 22.7 2.2E+02 0.0075 26.9 7.9 56 66-124 68-129 (394)
125 4dq6_A Putative pyridoxal phos 22.7 3.8E+02 0.013 24.9 9.7 52 67-123 111-170 (391)
126 1y7l_A O-acetylserine sulfhydr 22.7 4.4E+02 0.015 24.0 10.7 89 35-126 26-117 (316)
127 2e7j_A SEP-tRNA:Cys-tRNA synth 22.3 3E+02 0.01 25.4 8.8 12 68-79 91-102 (371)
128 1zsy_A Mitochondrial 2-enoyl t 22.0 2.3E+02 0.0077 26.5 7.7 80 44-124 138-223 (357)
129 3fpc_A NADP-dependent alcohol 21.9 1.9E+02 0.0066 26.9 7.2 78 44-125 138-219 (352)
130 2zbc_A 83AA long hypothetical 21.8 1.5E+02 0.0052 20.4 5.0 24 465-488 15-38 (83)
131 3i16_A Aluminum resistance pro 21.4 3.9E+02 0.013 25.8 9.4 59 67-125 112-184 (427)
132 3sma_A FRBF; N-acetyl transfer 21.2 69 0.0024 29.1 3.5 22 57-78 26-47 (286)
133 4hvk_A Probable cysteine desul 21.2 1.8E+02 0.0062 27.0 6.9 13 112-124 107-119 (382)
134 3jzl_A Putative cystathionine 21.1 4.5E+02 0.015 25.1 9.7 58 67-125 98-167 (409)
135 2nyg_A YOKD protein; PFAM02522 20.9 69 0.0024 28.9 3.5 22 57-78 17-38 (273)
136 1p5j_A L-serine dehydratase; l 20.8 2.7E+02 0.0091 26.4 7.9 60 70-130 93-152 (372)
137 1yqd_A Sinapyl alcohol dehydro 20.6 3.1E+02 0.011 25.7 8.4 62 61-125 178-240 (366)
138 4d9i_A Diaminopropionate ammon 20.5 5.5E+02 0.019 24.3 10.8 63 69-132 110-173 (398)
139 3a2b_A Serine palmitoyltransfe 20.4 3.9E+02 0.013 25.0 9.2 52 68-123 125-179 (398)
140 1o58_A O-acetylserine sulfhydr 20.2 4.8E+02 0.017 23.6 10.4 49 78-126 72-120 (303)
141 3aey_A Threonine synthase; PLP 20.2 2.8E+02 0.0096 25.9 7.9 54 77-130 83-137 (351)
142 3ej9_B Beta-subunit of trans-3 20.2 1.3E+02 0.0044 20.4 3.7 53 496-548 2-57 (70)
143 3ht4_A Aluminum resistance pro 20.0 3.6E+02 0.012 26.0 8.9 58 67-125 104-173 (431)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.1e-81 Score=661.55 Aligned_cols=511 Identities=24% Similarity=0.382 Sum_probs=403.0
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECC--------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHH
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGS--------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~--------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~ 84 (567)
....+|.+|+.++|+++++++||++|+++.+ +++||+||+++++++|+.|.+.|+++||+|+++++|+++++
T Consensus 12 p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~ 91 (549)
T 3g7s_A 12 PSLYYPKISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV 91 (549)
T ss_dssp CCCCCCCCCTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred CCCCcCCCCHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH
Confidence 3456778999999999999999999999977 89999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc
Q 008389 85 EAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164 (567)
Q Consensus 85 ~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (567)
+++|||+++|++++|+++.++.+++.++++.++++++|++....+.+....... ....++.++..
T Consensus 92 ~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~------- 156 (549)
T 3g7s_A 92 MTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--------GVERVFVVGGE------- 156 (549)
T ss_dssp HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--------CCCEEEEETCS-------
T ss_pred HHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--------CCcEEEEeCCC-------
Confidence 999999999999999999999999999999999999999998877665543221 23445554422
Q ss_pred hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecC
Q 008389 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLP 244 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p 244 (567)
...+.+++..............++++++|+|||||||.||+|.++|+++.+.+......+++.++|++++.+|
T Consensus 157 -------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p 229 (549)
T 3g7s_A 157 -------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMP 229 (549)
T ss_dssp -------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSC
T ss_pred -------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCc
Confidence 1345555555443332222233489999999999999999999999999999999888899999999999999
Q ss_pred ccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC--cCCCCchhhhhccCCCC
Q 008389 245 MFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT--ILPLPHVVHVNTAGAAP 322 (567)
Q Consensus 245 ~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~l~~lr~i~~~G~~l 322 (567)
++|.+++...+..+..|+++++...+++..+++.|+++++|++.++|+++..|++...... .. ++++|.+++||+++
T Consensus 230 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-~~~lr~~~~gg~~l 308 (549)
T 3g7s_A 230 MFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYD-WSYLKVFATGAWPV 308 (549)
T ss_dssp TTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCC-CTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCC-ccceeEEEeCCccC
Confidence 9999999887778888999999888999999999999999999999999999987543322 33 88999999999999
Q ss_pred CHHHHHHHHhc-----C---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCc
Q 008389 323 PPSVLHAMSQK-----G---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQP 394 (567)
Q Consensus 323 ~~~~~~~~~~~-----~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~ 394 (567)
++++.+.+.+. + +++++.||+||++++++.+.. .......++|.|++++ +++|+|+++|++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~----------~~~~~~~~~G~p~~~~-~~~i~d~~~g~~ 377 (549)
T 3g7s_A 309 APALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPP----------LRLDKSTTQGVPMSDI-ELKVISLEDGRE 377 (549)
T ss_dssp CHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEEEECCG----------GGGGGTTSCCEECTTC-EEEEECSSSCCE
T ss_pred CHHHHHHHHHHHHhhcCCccccccceEeccccchhhhcCCc----------cccCcCCCccccCCCC-EEEEEeCCCCcC
Confidence 99999998853 5 899999999999877665321 1123457899999999 899999778999
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcc---cCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETF---ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVE 469 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~---~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE 469 (567)
++.| +.|||+|+|+.++.|||++++.+...| .+| ||+|||+|++++||++++.||.||+||++|++|+|.|||
T Consensus 378 ~~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE 455 (549)
T 3g7s_A 378 LGVG--ESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELE 455 (549)
T ss_dssp ECTT--CCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHH
T ss_pred CCCC--CceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHH
Confidence 9998 889999999999999999999999998 678 999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCc-cchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccc
Q 008389 470 NMMYLHPAVLEASVVARADERWGESPCAFVTLKPEV-DKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547 (567)
Q Consensus 470 ~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (567)
++|.++|+|.+++|++.+++..|+.++++|+++++. ...+. ++|+++++++|+.|++|+.+.+++ ||+|++||+
T Consensus 456 ~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi 531 (549)
T 3g7s_A 456 ALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVDE----EDIIEWVRERISGYKRVREVEFVEELPRTASGKL 531 (549)
T ss_dssp HHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTSCCH----HHHHHHHHTTCC-----CCCCEEEECC-------
T ss_pred HHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCcCCH----HHHHHHHHHhccCcccceEEEEeccCCCCCCcCE
Confidence 999999999999999999998899999999998873 13444 789999999999999999999888 999999999
Q ss_pred cHHHHHHHHHHcCCcc
Q 008389 548 QKHVLRAKAKEMGPVR 563 (567)
Q Consensus 548 ~r~~l~~~~~~~~~~~ 563 (567)
+|++|++++.+.....
T Consensus 532 ~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 532 LRRLLREKEAEGHHHH 547 (549)
T ss_dssp ----------------
T ss_pred eHHHHHHHhhcccccc
Confidence 9999999988776544
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.6e-80 Score=649.25 Aligned_cols=510 Identities=24% Similarity=0.369 Sum_probs=437.7
Q ss_pred chhhhc-ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 13 NAANYM-ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 13 ~~~~~~-~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
...+.| ++|+.++|.++++++|+++|+++. ++++||+||.++++++|+.|++.|+++||+|+++++|++++++++||
T Consensus 14 ~~~~~p~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la 93 (536)
T 3ni2_A 14 PDIYIPKNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLG 93 (536)
T ss_dssp CCCCCCSSCCHHHHHTTTGGGSTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCCCCCCCcHHHHHHHHhhcCCCceEEEECCCCCEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 344455 589999999999999999999986 58999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|+++.++.+++.++++.++++++|++....+.+.+...... ..++.++...
T Consensus 94 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~----------- 153 (536)
T 3ni2_A 94 ASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESD---------VKVMCVDSAP----------- 153 (536)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHHT---------CEEEESSCCC-----------
T ss_pred HHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhcC---------ceEEEecCCC-----------
Confidence 99999999999999999999999999999999999988877766544322 2344444321
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCc
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPM 245 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~ 245 (567)
.+...++++....... .+.....++++++|+|||||||.||+|.++|+++.+.+..... .+++.++|++++.+|+
T Consensus 154 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~ 232 (536)
T 3ni2_A 154 DGCLHFSELTQADENE-APQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPM 232 (536)
T ss_dssp TTCEETHHHHTSCGGG-CCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCT
T ss_pred CCccCHHHHhhccccc-cccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecCh
Confidence 1223445554433222 1223456789999999999999999999999999888766543 3467899999999999
Q ss_pred cchhhhHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCH
Q 008389 246 FHCNGWCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324 (567)
Q Consensus 246 ~~~~g~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~ 324 (567)
+|.+|+.. .+..+..|+++++.+.+++..+++.++++++|++.++|+++..+++........ ++++|.+++||+++++
T Consensus 233 ~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gGe~l~~ 311 (536)
T 3ni2_A 233 FHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHD-LSSLRMIKSGGAPLGK 311 (536)
T ss_dssp TSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSC-CTTCCEEEEESSCCCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCC-CccceEEEECCCCCCH
Confidence 99999864 455667788888888899999999999999999999999999999887655555 8999999999999999
Q ss_pred HHHHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCce
Q 008389 325 SVLHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402 (567)
Q Consensus 325 ~~~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (567)
++.+++.+. ++++++.||+||++++++.+...... ......+++|.|++++ +++|+|++++++++.| +.
T Consensus 312 ~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~------~~~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~ 382 (536)
T 3ni2_A 312 ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKE------PFDIKPGACGTVVRNA-EMKIVDPETGASLPRN--QP 382 (536)
T ss_dssp HHHHHHHHHCTTSEEEEEEECGGGSSEEEECGGGSSS------CCCCCTTCCCEECSSC-EEEEECTTTCCBCCTT--CC
T ss_pred HHHHHHHHHCCCCCccccccccccchhhhcccccCCc------cccCCCCCeeEeCCCc-EEEEEeCCCCcCCCCC--Cc
Confidence 999999854 89999999999998776654321110 1112347899999999 8999998889999998 88
Q ss_pred EEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceee
Q 008389 403 GEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEA 481 (567)
Q Consensus 403 Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~ 481 (567)
|||+++|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.+||++|.++|+|.++
T Consensus 383 GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a 462 (536)
T 3ni2_A 383 GEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDA 462 (536)
T ss_dssp EEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEE
T ss_pred cEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceE
Confidence 9999999999999999999999999 689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHH
Q 008389 482 SVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKE 558 (567)
Q Consensus 482 ~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~ 558 (567)
+|++.+++..|+.++++|+..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+
T Consensus 463 ~Vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 463 AVVGLKDEDAGEVPVAFVVKSEKS-QATE----DEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EEEEEEETTTEEEEEEEEEECTTC-CCCH----HHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred EEEeeecCCCCceeEEEEEecCCC-CCCH----HHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 999999998899999999988765 4445 789999999999999999999888 99999999999999988754
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=3.1e-80 Score=645.31 Aligned_cols=504 Identities=29% Similarity=0.407 Sum_probs=433.3
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECCc--cccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhh
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGST--RYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGV 90 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~--~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~ 90 (567)
........|+.++|+++++++|+++|+++.++ ++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||
T Consensus 9 ~~~~~~~~~l~~~l~~~a~~~p~~~A~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~ 88 (517)
T 3r44_A 9 VDDDDKMKNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGA 88 (517)
T ss_dssp ---CGGGGCHHHHHHHHHHHSTTSEEEEEGGGTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCCcccccCHHHHHHHHHHhCCCCeEEEeCCcCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHH
Confidence 33444578999999999999999999999876 9999999999999999999999999999999999999999999999
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR 170 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 170 (567)
+++|++++|+++.++.+++.++++.++++++|++....+.+........ ....++.+..
T Consensus 89 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------------- 147 (517)
T 3r44_A 89 AKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQAD-------PPGTVTDWIG-------------- 147 (517)
T ss_dssp HHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSSS-------CCTTCCEEEE--------------
T ss_pred HHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhccC-------CccEEEEccC--------------
Confidence 9999999999999999999999999999999999988776655433221 1111111111
Q ss_pred ChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhh
Q 008389 171 GAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 171 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 250 (567)
...+.+.+....... +.....++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..+
T Consensus 148 -~~~~~~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~ 225 (517)
T 3r44_A 148 -ADSLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAA 225 (517)
T ss_dssp -HHHHHHHHHHCCCCC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHH
T ss_pred -cccHHHHhhccCcCC-CCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHH
Confidence 134455554433222 223457789999999999999999999999999999999888899999999999999999999
Q ss_pred hHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 251 WCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
+...+..++.|+++++.+.+++..+++.++++++|++.++|+++..+.+........ ++++|.+++||+++++++.+.+
T Consensus 226 ~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~~~~~~~ 304 (517)
T 3r44_A 226 LTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELD-APDFRYFITGGAPMPEALIKIY 304 (517)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCC-CTTCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCC-CCcccEEEECCCCCCHHHHHHH
Confidence 988777777899988888899999999999999999999999999998875544444 8899999999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
.+.++++++.||+||+++.++..... ......+++|.|++++ .++|+|++ +.+++.+ .|||+++|+
T Consensus 305 ~~~~~~~~~~YG~TE~~~~~~~~~~~---------~~~~~~~~~G~~~~~~-~~~i~d~~-~~~~~~g---~GEl~v~g~ 370 (517)
T 3r44_A 305 AAKNIEVVQGYALTESCGGGTLLLSE---------DALRKAGSAGRATMFT-DVAVRGDD-GVIREHG---EGEVVIKSD 370 (517)
T ss_dssp HHTTCEEEEEEECGGGTTCEEEECGG---------GTTTTTTCCBEECTTE-EEEEECTT-SCEESSE---EEEEEEEET
T ss_pred HhcCCcEEEeecccccccceeecCCc---------cccccCCCCCcCCCCe-EEEEECCC-CCCCCCC---CeEEEEeCc
Confidence 98899999999999998776654321 1123457899999999 89999976 8888775 699999999
Q ss_pred cccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 411 VVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
.++.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++.
T Consensus 371 ~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~ 450 (517)
T 3r44_A 371 ILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEK 450 (517)
T ss_dssp TSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred chhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
.|+.+++++ ..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+..
T Consensus 451 ~g~~~~a~v-~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 515 (517)
T 3r44_A 451 WGEIAAAIV-VADQN-EVSE----QQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATV 515 (517)
T ss_dssp TEEEEEEEE-EECTT-TCCH----HHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGC
T ss_pred cCceEEEEE-ECCCC-CCCH----HHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhc
Confidence 888888888 44443 3444 688999999999999999999888 9999999999999999998753
No 4
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.4e-81 Score=654.11 Aligned_cols=512 Identities=32% Similarity=0.490 Sum_probs=397.7
Q ss_pred cccCHHHHHhhhhhcCCCceeEEE----CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVH----GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~----~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
.++|+.++|+++++++|+++|+++ .++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++
T Consensus 16 ~~~~l~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 16 EELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp CCCCTHHHHHHHHHHSTTCEEEEECTTSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhCCCceEEEEecCCCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 357999999999999999999994 4579999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChH
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAV 173 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 173 (567)
|++++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++.... ....
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~~~~ 158 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELK-------TVQHFVVMDEKAP----------EGYL 158 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGCS-------SCCEEEESSSCCC----------TTCE
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhCC-------CccEEEEecCCCC----------cccc
Confidence 9999999999999999999999999999999887665544322111 2344555543211 1223
Q ss_pred HHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHH--HHHhccCCCcEEEEecCccchhhh
Q 008389 174 EYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSV--ALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 174 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
.+++++...... ....++++++|+|||||||.||+|.+||+++....... ...++++++|++++.+|++|.+++
T Consensus 159 ~~~~~~~~~~~~----~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 234 (541)
T 1v25_A 159 AYEEALGEEADP----VRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAW 234 (541)
T ss_dssp EHHHHCCSCCCC----CCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHH
T ss_pred cHHHHhhccCCc----ccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHH
Confidence 455555433221 23456899999999999999999999999998776552 345678899999999999999999
Q ss_pred HHHHHHhhhcCeeEEecc-CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHH
Q 008389 252 CYTWSLAALCGTSICLRQ-VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAM 330 (567)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~ 330 (567)
...+.+++.|+++++... +++..+++.|+++++|++.++|+++..|++........ ++++|.+++||+++++++.+++
T Consensus 235 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~ 313 (541)
T 1v25_A 235 CLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHR-LKTLRRLVVGGSAAPRSLIARF 313 (541)
T ss_dssp THHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCC-CSSCCEEEECSSCCCHHHHHHH
T ss_pred HHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCc-chhccEEEECCCCCCHHHHHHH
Confidence 777788888998888754 69999999999999999999999999998764433333 7899999999999999999999
Q ss_pred HhcCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 331 SQKGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 331 ~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
..+++++++.||+||++++++.+.....+.............++|.|++++ +++|+|++ +++++.++++.|||+++|+
T Consensus 314 ~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~-g~~~~~~~~~~GEl~v~g~ 391 (541)
T 1v25_A 314 ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV-RLRVADEE-GRPVPKDGKALGEVQLKGP 391 (541)
T ss_dssp HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTC-EEEEECTT-SCBCCSSSCCCEEEEEEST
T ss_pred HHhCCceeecccccccccceecccccccccccCccccccccCCCCCcCCCc-EEEEECCC-CCCCCCCCCcceEEEEeCc
Confidence 767999999999999987766554332222222222234568899999999 89999987 8888865446899999999
Q ss_pred cccccccCCCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 411 VVMKGYLKNPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.++.||+++++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 392 ~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~ 471 (541)
T 1v25_A 392 WITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHP 471 (541)
T ss_dssp TSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECS
T ss_pred chhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCC
Confidence 999999999999999996 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
..++.++++|++. +. ..+. +++++++++ +|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 472 ~~~~~~~a~vv~~-~~-~~~~----~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 472 KWQERPLAVVVPR-GE-KPTP----EELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp SSSEEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred CcCceEEEEEEEC-CC-CCCH----HHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 8899999999876 22 3333 678888988 899999999999888 999999999999999987543
No 5
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.8e-81 Score=656.81 Aligned_cols=520 Identities=20% Similarity=0.262 Sum_probs=342.8
Q ss_pred cchhhhcccCHHHHHhhhhhcCCCceeEE---E--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHH
Q 008389 12 KNAANYMALTPLWFLDRAATVHPTRTSVV---H--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEA 86 (567)
Q Consensus 12 ~~~~~~~~~t~~~~l~~~a~~~p~~~a~~---~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~ 86 (567)
....++++.|+.++|.+.++++|+++|++ + .++++||+||.++++++|+.|++.|+++||+|+++++|+++++++
T Consensus 12 ~~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 91 (550)
T 3rix_A 12 APFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMP 91 (550)
T ss_dssp CCSSCCCCSCHHHHHHHHHHHHHTSTTCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHH
T ss_pred CCCCCcccCCHHHHHHHHHHhCCCCceEEEeeecCCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHH
Confidence 35566778999999999999999999986 3 358999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchh
Q 008389 87 HFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKY 166 (567)
Q Consensus 87 ~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 166 (567)
+|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+.......+ ....++.++.....
T Consensus 92 ~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------ 158 (550)
T 3rix_A 92 VLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKLP-------IIQKIIIMDSKTDY------ 158 (550)
T ss_dssp HHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHCT-------TCCEEEETTCSSCB------
T ss_pred HHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhCC-------CcceEEEEcCCccc------
Confidence 99999999999999999999999999999999999999998887776655554 45566665543211
Q ss_pred ccCCChHHHHHHHhcCCCC------CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCc
Q 008389 167 ALGRGAVEYEKFLQTGDPQ------FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGA 237 (567)
Q Consensus 167 ~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d 237 (567)
....++.+++...... ..+.....++++++|+|||||||.||+|.++|+++...+...... +++.+++
T Consensus 159 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~ 235 (550)
T 3rix_A 159 ---QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDT 235 (550)
T ss_dssp ---TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTC
T ss_pred ---cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCc
Confidence 1223455555432221 111222345789999999999999999999999998887766554 4678999
Q ss_pred EEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhc
Q 008389 238 VYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNT 317 (567)
Q Consensus 238 ~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~ 317 (567)
++++.+|++|.+|+...+.+++.|+++++...+++..+++.|+++++|++.++|+++..+++........ ++++|.+++
T Consensus 236 ~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~ 314 (550)
T 3rix_A 236 AILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYD-LSNLHEIAS 314 (550)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSC-CTTCCEEEE
T ss_pred EEEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccC-cccccEEEE
Confidence 9999999999999988888888999999998899999999999999999999999999999887665555 899999999
Q ss_pred cCCCCCHHHHHHHHh-cCC-eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCcc
Q 008389 318 AGAAPPPSVLHAMSQ-KGF-HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~-~~~-~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~ 395 (567)
||+++++++.+++.+ ++. .+++.||+||+++.++.+... ....+++|.|++++ +++|+|+++++++
T Consensus 315 gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~~~~~~-~~~i~d~~~~~~~ 382 (550)
T 3rix_A 315 GGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEG-----------DDKPGAVGKVVPFF-EAKVVDLDTGKTL 382 (550)
T ss_dssp CSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTEEEEECTTC-EEEEECTTTCCBC
T ss_pred ecCCCCHHHHHHHHHHcCCCccccccCcCccccceecCCCC-----------CCCCCCcccccCCc-EEEEEeCCCCcCC
Confidence 999999999999985 466 499999999998776654321 12347899999999 8999998889999
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhc
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYL 474 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 474 (567)
+.| +.|||+|+|+.++.||+++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.+
T Consensus 383 ~~g--~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (550)
T 3rix_A 383 GVN--QRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQ 460 (550)
T ss_dssp CTT--CCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC-------------------------
T ss_pred CCC--CCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHHh
Confidence 998 889999999999999999999999998 79999999999999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCc-eeecCc-ccCCCCccccHHHH
Q 008389 475 HPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK-SIVFGP-LPKTATGKIQKHVL 552 (567)
Q Consensus 475 ~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l 552 (567)
+|+|.+++|++.+++..|+.++++|++.++. ..+. ++++++++++++.+..|. .+++++ ||+|++||++|++|
T Consensus 461 ~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L 535 (550)
T 3rix_A 461 HPNIFDAGVAGLPDDDAGELPAAVVVLEHGK-TMTE----KEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKI 535 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcceEEEEEeecCCCCceEEEEEEecCCC-CCCH----HHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHH
Confidence 9999999999999999899999999988765 4444 688899999999886655 577777 99999999999999
Q ss_pred HHHHHHcCCccccCC
Q 008389 553 RAKAKEMGPVRKSKL 567 (567)
Q Consensus 553 ~~~~~~~~~~~~~~~ 567 (567)
++++.+.....++||
T Consensus 536 ~~~~~~~~~~~~~~l 550 (550)
T 3rix_A 536 REILIKAKKGGKSKL 550 (550)
T ss_dssp ---------------
T ss_pred HHHHHhhccccccCC
Confidence 999998887777775
No 6
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=4.1e-79 Score=640.13 Aligned_cols=500 Identities=22% Similarity=0.317 Sum_probs=425.3
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
|++.|+.++|+++++++|+++|+++.++++||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++
T Consensus 22 ~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~ 101 (539)
T 1mdb_A 22 WAGETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGAL 101 (539)
T ss_dssp SCSCCHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred ccCCCHHHHHHHHHHHCCCCEEEEeCCCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++|+++.++.+++.++++.++++++|++.+.. ..+......++ ....++..+....
T Consensus 102 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 102 PVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLP-------TLKNIIVAGEAEE------------ 162 (539)
T ss_dssp EEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCT-------TCCCEEEESCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCC-------CccEEEEcCCccc------------
Confidence 99999999999999999999999999987642 22222222222 3344444332110
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhh
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
+.++...... ........++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+++
T Consensus 163 ---~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (539)
T 1mdb_A 163 ---FLPLEDLHTE-PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPL 238 (539)
T ss_dssp ---SEEGGGCCCC-CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHH
T ss_pred ---hhhhhhcccc-ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchh
Confidence 1111111111 111223567899999999999999999999999999998888888899999999999999999998
Q ss_pred HH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 252 CY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.. .+.++..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 239 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gG~~l~~~~~~~ 317 (539)
T 1mdb_A 239 SSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDD-LSSLQVLQVGGAKFSAEAARR 317 (539)
T ss_dssp HSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCC-CTTCCEEEEESSCCCHHHHTT
T ss_pred hHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCC-ccceeEEEEcCCCCCHHHHHH
Confidence 74 667778899988888899999999999999999999999999998764433334 889999999999999999999
Q ss_pred HHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEe
Q 008389 330 MSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMS 408 (567)
Q Consensus 330 ~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~ 408 (567)
+.+ +++++++.||+||++..+.. . .........++|.|+++..+++|+|++ +++++.| +.|||+++
T Consensus 318 ~~~~~~~~~~~~YG~TE~~~~~~~-~---------~~~~~~~~~~~G~p~~~~~~~~i~d~~-~~~~~~g--~~GEl~v~ 384 (539)
T 1mdb_A 318 VKAVFGCTLQQVFGMAEGLVNYTR-L---------DDPEEIIVNTQGKPMSPYDESRVWDDH-DRDVKPG--ETGHLLTR 384 (539)
T ss_dssp HHHHTCSEEEEEEECTTSCEEECC-T---------TSCHHHHHHCCCEESSTTCEEEEECTT-SCBCCTT--CCEEEEEE
T ss_pred HHHHhCCcEEEEEcCCCCcccccC-C---------CCcHHhcCCCCCcccCCCceEEEECCC-CCCCcCC--CcceEEee
Confidence 985 59999999999996422221 1 011123457899999865479999976 8999998 88999999
Q ss_pred cccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEee
Q 008389 409 GNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487 (567)
Q Consensus 409 ~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 487 (567)
|+.++.|||++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+
T Consensus 385 g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 464 (539)
T 1mdb_A 385 GPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMP 464 (539)
T ss_dssp CTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEE
T ss_pred CcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEecc
Confidence 9999999999999999999 599999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhc-CCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 488 DERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAK-MPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 488 ~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++..|+.++++|++.+. ..+. ++++++++++ |+.|++|+.+++++ ||+|++||++|++|++++.+.
T Consensus 465 ~~~~g~~~~a~vv~~~~--~~~~----~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 532 (539)
T 1mdb_A 465 DQFLGERSCVFIIPRDE--APKA----AELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEK 532 (539)
T ss_dssp ETTTEEEEEEEEEESSS--CCCH----HHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHH
T ss_pred ccccCceEEEEEEECCC--CCCH----HHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHH
Confidence 99888999999998743 3344 6889999997 99999999999888 999999999999999998765
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=9.7e-79 Score=640.97 Aligned_cols=504 Identities=21% Similarity=0.295 Sum_probs=411.0
Q ss_pred ccCHH-HHHhhhhhcCCCceeEEEC-----CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhh
Q 008389 19 ALTPL-WFLDRAATVHPTRTSVVHG-----STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPM 92 (567)
Q Consensus 19 ~~t~~-~~l~~~a~~~p~~~a~~~~-----~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~ 92 (567)
..++. ++|+++++++||++|+++. ++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||++
T Consensus 54 ~~n~~~~~l~~~a~~~pd~~Al~~~~~~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~ 133 (580)
T 3etc_A 54 NFNFAYDVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHK 133 (580)
T ss_dssp SCCHHHHTHHHHHHHCTTCEEEEEEESSSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhhCCCCEEEEEEcCCCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHh
Confidence 35666 9999999999999999972 37899999999999999999999999999999999999999999999999
Q ss_pred cCCeeeeccccCChHHHHHHHhccCceEEEEcccch--HHHHHHHHHHhhhcCCCCCC-CeEEEecCCCCCcccchhccC
Q 008389 93 AGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF--KLAEEALKIMEEKSNGRFKP-PLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 93 ~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~ 169 (567)
+|++++|+++.++.+++.++++.++++++|++.+.. ..+.+....++ .. ..++.++... .
T Consensus 134 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----------~ 196 (580)
T 3etc_A 134 LGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAECG-------DIPLKKAKVGGDV----------L 196 (580)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHC-------SCCCEEEEESSSC----------C
T ss_pred CCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhCC-------CcceEEEEeCCcc----------c
Confidence 999999999999999999999999999999988765 55555544443 23 4455554321 1
Q ss_pred CChHHHHHHHhcCCCCCCCC---CCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCcc
Q 008389 170 RGAVEYEKFLQTGDPQFDWK---PPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMF 246 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~ 246 (567)
.+...+.+.+.......... ....++++++|+|||||||.||+|.++|.++...+......+++.+++++++..|++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (580)
T 3etc_A 197 EGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSG 276 (580)
T ss_dssp TTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTT
T ss_pred cccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChH
Confidence 23455666666554433222 235678999999999999999999999999888777666667889999999999999
Q ss_pred chhhhHHH-HHHhhhcCeeEEe--ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCC
Q 008389 247 HCNGWCYT-WSLAALCGTSICL--RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPP 323 (567)
Q Consensus 247 ~~~g~~~~-~~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~ 323 (567)
|..++... +..+..|+++++. ..+++..+++.|+++++|++.++|++++.|.+... .... ++++|.+++|||+++
T Consensus 277 ~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~-~~~~-l~~lr~i~~gGe~l~ 354 (580)
T 3etc_A 277 WGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKEDL-SHYN-FSTLKYAVVAGEPLN 354 (580)
T ss_dssp STHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSCC----C-CTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhccc-ccCC-CccceEEEEccCCCC
Confidence 88877654 4445566666665 46899999999999999999999999999998632 2333 889999999999999
Q ss_pred HHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCce
Q 008389 324 PSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTI 402 (567)
Q Consensus 324 ~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~ 402 (567)
+++.+++.+ +++++++.||+||++..++..... ....+++|.|+|++ +++|+|++ |++++.| +.
T Consensus 355 ~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~p~~~~-~v~ivd~~-g~~~~~g--~~ 419 (580)
T 3etc_A 355 PEVFNRFLEFTGIKLMEGFGQTETVVTIATFPWM-----------EPKPGSIGKPTPGY-KIELMDRD-GRLCEVG--EE 419 (580)
T ss_dssp HHHHHHHHHHHSCCCEEEECCTTSSCCEECCTTS-----------CCCTTCCBEECTTC-EEEEECTT-SCBCCTT--CC
T ss_pred HHHHHHHHHHhCCeEecccccccccceeecCCCC-----------CCCCCccccCCCCC-EEEEECCC-CCCCCCC--Cc
Confidence 999999985 499999999999997665543221 12347899999999 89999987 9999998 88
Q ss_pred EEEEEec-----ccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCC
Q 008389 403 GEIVMSG-----NVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477 (567)
Q Consensus 403 Gei~v~~-----~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (567)
|||+++| +.++.||+++++.+.+.|.+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+
T Consensus 420 GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~ 499 (580)
T 3etc_A 420 GEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPA 499 (580)
T ss_dssp EEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTT
T ss_pred eEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCC
Confidence 9999997 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 478 i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
|.+++|++.+++..|+.+.++|++.++... .+.+.++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++++
T Consensus 500 V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~--~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~ 577 (580)
T 3etc_A 500 VLECAITGVPDPVRGQVIKATIVLTKDYTP--SDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKD 577 (580)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEECTTCCC--CHHHHHHHHHHHHHHSCGGGCCSEEEEECC------------------
T ss_pred eeeEEEEeeeccCCCcEEEEEEEECCCCCC--CHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHh
Confidence 999999999999989999999999887522 22345789999999999999999999888 999999999999999987
Q ss_pred HH
Q 008389 557 KE 558 (567)
Q Consensus 557 ~~ 558 (567)
.+
T Consensus 578 ~~ 579 (580)
T 3etc_A 578 QS 579 (580)
T ss_dssp --
T ss_pred hc
Confidence 64
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=7.8e-79 Score=638.86 Aligned_cols=503 Identities=20% Similarity=0.275 Sum_probs=430.0
Q ss_pred cCHHH-HHhhhhhcCCCceeEEE--CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 20 LTPLW-FLDRAATVHPTRTSVVH--GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 20 ~t~~~-~l~~~a~~~p~~~a~~~--~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
+|+.+ +|.+.++++ +++|+++ .++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 25 ~~l~~~~l~~~~~~~-~~~A~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav 103 (548)
T 2d1s_A 25 AGTQLRKYMERYAKL-GAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVG 103 (548)
T ss_dssp HHHHHHHHHHHHHHH-TCEEEEETTTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCE
T ss_pred CcHHHHHHHhhhccc-CCceEEEcCCCCEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCE
Confidence 58899 888889999 9999998 4689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++.... ......++
T Consensus 104 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---------~~~~~~~~ 167 (548)
T 2d1s_A 104 VAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTVT-------TIKTIVILDSKVD---------YRGYQCLD 167 (548)
T ss_dssp EEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHST-------TCCEEEETTCSSC---------BTTBCBHH
T ss_pred EeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCCC-------CCCEEEEeCCccc---------ccccccHH
Confidence 9999999999999999999999999999988766655433322 2344555543210 01122455
Q ss_pred HHHhcCCCCCCCCCCC------CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccc
Q 008389 177 KFLQTGDPQFDWKPPQ------DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~------~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~ 247 (567)
+++........+.... .++++++++|||||||.||+|.+||+++.+.+...... ++++++|++++.+|++|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 247 (548)
T 2d1s_A 168 TFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHH 247 (548)
T ss_dssp HHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHH
Confidence 6555432210111111 23899999999999999999999999999888776665 67889999999999999
Q ss_pred hhhhHHHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHH
Q 008389 248 CNGWCYTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVL 327 (567)
Q Consensus 248 ~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~ 327 (567)
.+|+...+...+.|+++++...+++..+++.|+++++|+++++|+++..|.+........ ++++|.+++||+++++++.
T Consensus 248 ~~g~~~~~~~~l~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~i~~gG~~l~~~~~ 326 (548)
T 2d1s_A 248 GFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYD-LSNLVEIASGGAPLSKEVG 326 (548)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSC-CTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHhcCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCccccccc-ccceeEEEEcCccCCHHHH
Confidence 999877555555888888888899999999999999999999999999999876544444 8899999999999999999
Q ss_pred HHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEE
Q 008389 328 HAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEI 405 (567)
Q Consensus 328 ~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei 405 (567)
+++.+. ++++++.||+||+++.++.+... ....+++|.|+|++ +++|+|++++++++.| +.|||
T Consensus 327 ~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~~G~~~~~~-~~~i~d~~~~~~~~~g--~~GEl 392 (548)
T 2d1s_A 327 EAVARRFNLPGVRQGYGLTETTSAIIITPEG-----------DDKPGASGKVVPLF-KAKVIDLDTKKSLGPN--RRGEV 392 (548)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEECCTT-----------CCCTTCCBEECTTC-EEEEECTTTCCBCCTT--CCEEE
T ss_pred HHHHHHcCCCceeeccccccccceeeecCcc-----------cCCCCCCCccCCCc-eEEEEeCCcCccCCCC--CCeEE
Confidence 999854 68899999999998766543211 12347899999999 8999997779999998 78999
Q ss_pred EEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEE
Q 008389 406 VMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVV 484 (567)
Q Consensus 406 ~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~ 484 (567)
+++|+.++.||+++++.+...| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|+
T Consensus 393 ~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~ 472 (548)
T 2d1s_A 393 CVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVA 472 (548)
T ss_dssp EEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEE
T ss_pred EECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEE
Confidence 9999999999999999999999 689999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCc-eeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 485 ARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPK-SIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 485 ~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~-~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+.+++..|+.++++|++.++. ..+. ++++++++++|+.|+.|. .+.+++ ||+|++||++|++|++++.+.
T Consensus 473 ~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 544 (548)
T 2d1s_A 473 GVPDPVAGELPGAVVVLESGK-NMTE----KEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKP 544 (548)
T ss_dssp EEEETTTEEEEEEEEEECTTC-CCCH----HHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSC
T ss_pred EEEcCCCCeeeEEEEEEcCCC-CCCH----HHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhh
Confidence 999998889999999988765 3444 688999999999999999 888888 999999999999999998754
No 9
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=7.2e-79 Score=632.77 Aligned_cols=491 Identities=22% Similarity=0.330 Sum_probs=422.8
Q ss_pred HHHhhhhhcCCCceeEE---ECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeec
Q 008389 24 WFLDRAATVHPTRTSVV---HGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 24 ~~l~~~a~~~p~~~a~~---~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i 100 (567)
++|++.++++|+++|+. +.++++||+||.++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 83 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPL 83 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHhCCCCceEEEecCCCcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEec
Confidence 46888999999999998 356899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHHh
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFLQ 180 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 180 (567)
++.++.+++.++++.++++++|++.+..+.+........ ..++.+..... ..+.+...
T Consensus 84 ~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 84 NTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG---------ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHHT---------CEEEECCTTSC-------------SHHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhcC---------ceEEEecCCcc-------------cccchhhh
Confidence 999999999999999999999999887665555443332 23333332211 11222222
Q ss_pred cCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHHHhh
Q 008389 181 TGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWSLAA 259 (567)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~~~ 259 (567)
..... .......++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+.. .+..++
T Consensus 142 ~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~ 220 (503)
T 4fuq_A 142 GASEA-FATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLF 220 (503)
T ss_dssp TSCSC-CCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHH
T ss_pred cCCCC-cCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH
Confidence 22211 1223456789999999999999999999999999999999989999999999999999999999754 556677
Q ss_pred hcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-CCeee
Q 008389 260 LCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVT 338 (567)
Q Consensus 260 ~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~ 338 (567)
.|+++++.+.+++..+++.++ ++|++.++|+++..+++........ ++++|.+++||+++++++.+.+.+. +++++
T Consensus 221 ~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 297 (503)
T 4fuq_A 221 ARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKET-TGHMRLFISGSAPLLADTHREWSAKTGHAVL 297 (503)
T ss_dssp TTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTT-TTTCCEEEECSSCCCHHHHHHHHHHHSCCEE
T ss_pred hCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccc-hhhcEEEEECCCCCCHHHHHHHHHHhCCCcc
Confidence 888888888899999999998 8999999999999999887655555 8899999999999999999999855 99999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||++...+.... .....+++|.|++++ +++|+|++++++++.| +.|||+++|+.++.||++
T Consensus 298 ~~YG~TE~~~~~~~~~~-----------~~~~~~~~G~p~~~~-~~~i~d~~~g~~~~~g--~~GEl~v~g~~v~~GY~~ 363 (503)
T 4fuq_A 298 ERYGMTETNMNTSNPYD-----------GDRVPGAVGPALPGV-SARVTDPETGKELPRG--DIGMIEVKGPNVFKGYWR 363 (503)
T ss_dssp ECCEETTTEECBCCCSS-----------SCCCTTEEEEBCTTC-EEEEECTTTCCBCCTT--CCEEEEEESTTSCCCBTT
T ss_pred ceEcccccCcccccCCC-----------CCCcCCccccCCCCe-EEEEEECCCCCCCcCC--CceEEEEECCchhhhhcC
Confidence 99999999765432211 112346789999999 8999998889999999 889999999999999999
Q ss_pred CCccchhccc-CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 419 NPKANEETFA-NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 419 ~~~~~~~~~~-~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
+++.+...|. +|||+|||+|++++||++++.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..|+.+++
T Consensus 364 ~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a 443 (503)
T 4fuq_A 364 MPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTA 443 (503)
T ss_dssp CHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEE
T ss_pred ChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEE
Confidence 9999999995 899999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred EEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 498 FVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 498 ~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
+|+..++. ..+. .+++++++++|+.|++|..+++++ ||+|++||++|++|++++.+.
T Consensus 444 ~v~~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDKGA-TIDE----AQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECTTC-CCCH----HHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCCCC-CCCH----HHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 99988776 4455 688999999999999999999888 999999999999999998654
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.7e-80 Score=647.12 Aligned_cols=501 Identities=28% Similarity=0.423 Sum_probs=336.5
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA 95 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~ 95 (567)
.++++|+.++|+++++++||++|+++.++++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||+++|+
T Consensus 2 s~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 81 (509)
T 3ivr_A 2 SLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGA 81 (509)
T ss_dssp CTTCCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHCCCceEEEECCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 96 VLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 96 ~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+++|+++.++.+++.++++.++++++|++.+....+......+. ....++.++..... +
T Consensus 82 ~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~--------------~ 140 (509)
T 3ivr_A 82 ILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSLG-------GVKKAYAIGDGSGP--------------F 140 (509)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGCS-------SCCEEEESSCCCSS--------------C
T ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcccC-------CceEEEEcCCCCcC--------------h
Confidence 99999999999999999999999999999987766444322221 34455555432111 1
Q ss_pred HHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 176 EKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 176 ~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
.++...............++++++|+|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+...+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~ 220 (509)
T 3ivr_A 141 APFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLML 220 (509)
T ss_dssp EEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHH
T ss_pred hhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHH
Confidence 11122111111222345778999999999999999999999999999999988899999999999999999999999888
Q ss_pred HHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-c-
Q 008389 256 SLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ-K- 333 (567)
Q Consensus 256 ~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~-~- 333 (567)
..++.+++.++...+++..+++.|+++++|++.++|+++..+++.... .. ++++|.++.+|++ +..+.+.+ +
T Consensus 221 ~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~--~~-l~~lr~~~~~g~~---~~~~~~~~~~~ 294 (509)
T 3ivr_A 221 TLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAP--AQ-LASLRAVTGLDTP---ETIERFEATCP 294 (509)
T ss_dssp HHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCG--GG-GTTCCEEEEECCH---HHHHHHHHHCT
T ss_pred HHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccc--cc-hhhhheecccCCh---HHHHHHHHhcC
Confidence 888889988888889999999999999999999999999999987622 22 7889999999987 66777764 4
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||++++++.+... .....+|.|++++ +++|+|++ +++++.| +.|||+++|+.++
T Consensus 295 ~~~~~~~YG~TE~~~~~~~~~~~------------~~~~~~G~p~~~~-~~~i~d~~-~~~~~~g--~~GEl~v~g~~~~ 358 (509)
T 3ivr_A 295 NATFWATFGQSETSGLSTFAPYR------------DRPKSAGRPLFWR-TVAVVDAE-DRPLPPG--EVGEIVLRGPTVF 358 (509)
T ss_dssp TCEEEEEEEEGGGTEEEEEEEGG------------GSTTSCCEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CCeEEcccCccccccccccCccc------------cCCCcccccCCCc-EEEEECCC-CCCCCCC--CceEEEEecCCcc
Confidence 89999999999998776654321 1123489999999 89999987 9999998 8899999999999
Q ss_pred ccccCCCccchhcccCCccccCceEEEeCCCcEEEeccc--cceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCC
Q 008389 414 KGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRS--KDIIISGGENISSVEVENMMYLHPAVLEASVVARADERW 491 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~--~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~ 491 (567)
.||+++++.+...|.+|||+|||+|++++||++++.||. +|+||++|++|+|.+||++|.++|+|.+++|++.+++..
T Consensus 359 ~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~ 438 (509)
T 3ivr_A 359 KGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQW 438 (509)
T ss_dssp CEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC-----------------------------------------
T ss_pred ccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEecccccc
Confidence 999999999999999999999999999999999999999 999999999999999999999999999999999999988
Q ss_pred CCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccc
Q 008389 492 GESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRK 564 (567)
Q Consensus 492 g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~ 564 (567)
|+.+++++++.++. ..+. ++++++++++|+.|++|+.+++++ ||+|++||++|++||+++.+.....+
T Consensus 439 ~~~~~a~v~~~~~~-~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 439 SEAIKAVCVCKPGE-SIAA----DALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CcEEEEEEEeCCCC-CCCH----HHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 99999999988765 4444 688999999999999999999888 99999999999999999988765544
No 11
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.1e-79 Score=645.25 Aligned_cols=504 Identities=20% Similarity=0.333 Sum_probs=340.0
Q ss_pred hcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 17 YMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 17 ~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
|.+.|+.++|+++++++|+++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 27 ~~~~tl~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav 106 (544)
T 3o83_A 27 WIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVV 106 (544)
T ss_dssp CCCCCTTHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCE
T ss_pred CCCCCHHHHHHHHHHhCCCceEEEcCCCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcE
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCC
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRG 171 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 171 (567)
++|+++.++.+++.++++.++++++|++.... ........... ....++.++....
T Consensus 107 ~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 107 VLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNL-------SPEIILMLNHQAT------------ 167 (544)
T ss_dssp EEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTC-------CCSEEEEETCCTT------------
T ss_pred EecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhccc-------CcceEEEecCCcc------------
Confidence 99999999999999999999999999988653 22222211111 3344554443211
Q ss_pred hHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhh
Q 008389 172 AVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGW 251 (567)
Q Consensus 172 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 251 (567)
...+.++............+..++++++++|||||||.||+|.++|+++.+.+......+++.++|++++.+|++|.+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 247 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFML 247 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHH
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeec
Confidence 11233444433333222244567899999999999999999999999999999999899999999999999999999988
Q ss_pred HH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 252 CY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 252 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 248 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~i~~gG~~l~~~~~~~ 326 (544)
T 3o83_A 248 SSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQ-IQSLKLLQVGGASFPESLARQ 326 (544)
T ss_dssp HSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHH-HTTCCEEEEESSCCCHHHHTH
T ss_pred chHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhcccc-CCcceEEEEcCCCCCHHHHHH
Confidence 74 666777888888888899999999999999999999999999998876554444 889999999999999999999
Q ss_pred HHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 330 MSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 330 ~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
+.+. ++++++.||+||++..+.... ........++|.|+ +++ +++|+|++ +++++.| +.|||++
T Consensus 327 ~~~~~~~~~~~~YG~TE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~~~g--~~GEl~v 392 (544)
T 3o83_A 327 VPEVLNCKLQQVFGMAEGLVNYTRLD----------DSDEQIFTTQGRPISSDD-EIKIVDEQ-YREVPEG--EIGMLAT 392 (544)
T ss_dssp HHHHHCSEEEEEEECTTSCEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEEEEE
T ss_pred HHHHhCCcEEeeeccccccceeecCC----------CchhhccCCCceecCCCc-EEEEECCC-CCCCCCC--CeeEEEE
Confidence 9855 999999999999864333211 11223457899996 788 89999965 9999998 8899999
Q ss_pred ecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 408 SGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 393 ~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~ 472 (544)
T 3o83_A 393 RGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAI 472 (544)
T ss_dssp ECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC---------------------------------
T ss_pred ecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEec
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcC
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~ 560 (567)
+++..|+.++++|+..+. ..+. .++++++++ +|+.|++|..+.+++ ||+|++||++|++|++++.+..
T Consensus 473 ~~~~~g~~~~a~vv~~~~--~~~~----~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 473 VDEQFGEKSCAFIVSRNP--ELKA----VVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCCCCceEEEEEEeCCC--CCCH----HHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 999989999999997663 3333 677888888 799999999999888 9999999999999999987653
No 12
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.9e-78 Score=630.86 Aligned_cols=499 Identities=18% Similarity=0.225 Sum_probs=423.3
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
||+.++|+++++++||++|+++.++++||+||+++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++|
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vp 80 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIP 80 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEE
T ss_pred CcHHHHHHHHHHHCCCceEEEeCCceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKFL 179 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l 179 (567)
+++.++.+++.++++.+++++++++...... .....+ +.. ..+.++.
T Consensus 81 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~----------------~~~~~~-~~~----------------~~~~~~~ 127 (512)
T 3fce_A 81 VDLSIPADRVQRIAENSGAKLLLSATAVTVT----------------DLPVRI-VSE----------------DNLKDIF 127 (512)
T ss_dssp EETTSCHHHHHHHHHHSCCCEEEESSCCCSS----------------CCSSEE-EET----------------HHHHHHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEecCccccc----------------ccccce-ech----------------hhhhhhc
Confidence 9999999999999999999999997543110 111111 100 1122222
Q ss_pred hcC-CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 180 QTG-DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 180 ~~~-~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
... .....+.....++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..++...+.++
T Consensus 128 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 128 FTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp HHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred ccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 211 1112222345678999999999999999999999999999999888899999999999999999999998888888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
+.|+++++.+. +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+++.+.
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESM-LPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTT-STTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchh-CccccEEEEecCcCCHHHHHHHHHHCC
Confidence 89999888865 68999999999999999999999999998876655555 8899999999999999999999854
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||+++.++...... ..........+|.|.+++ ++.|+|++ |++++.| +.|||+++|+.++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 356 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTE------EVLDQYKSLPVGYCKSDC-RLLIMKED-GTIAPDG--EKGEIVIVGPSVS 356 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCH------HHHHHCSSCCCEEECTTC-EEEEECSS-SCBCCTT--SCEEEEEESTTSC
T ss_pred CCEEEeCcccChhhhheeeEEecc------ccccccCCCccccccCCc-EEEEECCC-CCCCCCC--CeEEEEEeccccC
Confidence 889999999999987766543211 111223446789999999 89999976 9999998 7899999999999
Q ss_pred ccccCCCccchhccc----CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 414 KGYLKNPKANEETFA----NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 414 ~gy~~~~~~~~~~~~----~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.|||++++.+...|. +|||+|||+|++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 357 ~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 435 (512)
T 3fce_A 357 VGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKG 435 (512)
T ss_dssp SCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEET
T ss_pred hhhcCCchhhhhccccCCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecC
Confidence 999999999999883 569999999999 699999999999999999999999999999999999999999999998
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccc
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRK 564 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~ 564 (567)
..++.++++|++.++. ..+...+.++++++++++|+.|++|..+.+++ ||+|++||++|++|++.+.+...+..
T Consensus 436 ~~~~~~~a~vv~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~~~ 510 (512)
T 3fce_A 436 EKYDYLLAVVVPGEHS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHHHH 510 (512)
T ss_dssp TEEEEEEEEEEECSCC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC------
T ss_pred CCceEEEEEEecCCcc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccccc
Confidence 8889999999988765 33444556789999999999999999999888 99999999999999999988765543
No 13
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.3e-78 Score=631.03 Aligned_cols=500 Identities=21% Similarity=0.269 Sum_probs=431.2
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
||+.++|+++++++|+++|+++.++++||+||.++++++|..|.+. |.++|++|+++++|++++++++|||+++|++++
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~v 80 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYI 80 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEE
T ss_pred CcHHHHHHHHHHHCCCCeEEEcCCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEE
Confidence 6899999999999999999999999999999999999999999875 888999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++...... ... .......+.++
T Consensus 81 pl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~----------------~~~------------------~~~~~~~~~~~ 126 (511)
T 3e7w_A 81 PVDLSIPSERIAKIIESSGAELLIHAAGLSID----------------AVG------------------QQIQTVSAEEL 126 (511)
T ss_dssp EEETTSCHHHHHHHHHHHTCCEEEESSSCCTT----------------CCC------------------CSSCEEEHHHH
T ss_pred ecCCCChHHHHHHHHHhCCCCEEEecccccch----------------hcc------------------cccceecHhhh
Confidence 99999999999999999999999997653210 000 00111233444
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
+..............++++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|..++...+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 206 (511)
T 3e7w_A 127 LENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCL 206 (511)
T ss_dssp HTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred hccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHH
Confidence 44333322223345678999999999999999999999999999999888889999999999999999999988888888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-- 333 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-- 333 (567)
..|+++++... +++..+++.++++++|++.++|+++..++......... ++++|.+++||+++++++.+.+.+.
T Consensus 207 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 207 QSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL-LPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred hcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcccccccc-CCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 88998888765 68999999999999999999999999999876655555 8899999999999999999999864
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVM 413 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~ 413 (567)
++++++.||+||+++.++.+..... .........+|.|++++ +++|+|++ |++++.| +.|||+++|+.++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~~~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~v~ 355 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITND------VISRSESLPVGFAKPDM-NIFIMDEE-GQPLPEG--EKGEIVIAGPSVS 355 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHH------HHTTCSSCCCBEECTTC-EEEEECTT-SCBCCTT--CCEEEEEESTTSC
T ss_pred CcEEEeCcccchheeeeeEEecccc------ccccCCcCCCcceeCCC-EEEEECCC-CCCCCCC--CceEEEEecCccC
Confidence 8999999999999877765432211 11112335689999999 89999987 9999998 8899999999999
Q ss_pred ccccCCCccchhcc--cCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecC
Q 008389 414 KGYLKNPKANEETF--ANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADE 489 (567)
Q Consensus 414 ~gy~~~~~~~~~~~--~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~ 489 (567)
.||+++++.+...| .+| ||+|||+|+++ ||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++
T Consensus 356 ~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~-dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~ 434 (511)
T 3e7w_A 356 RGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQ-DGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPN 434 (511)
T ss_dssp CCBTTCHHHHHHHEEESSSSEEEEEEEEEEEE-TTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSS
T ss_pred hhhCCCcccchhhhcCCCCCEEEeCCCeEEcc-CCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCC
Confidence 99999999999988 344 79999999994 99999999999999999999999999999999999999999999988
Q ss_pred CCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCCccccC
Q 008389 490 RWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGPVRKSK 566 (567)
Q Consensus 490 ~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~~~~~~ 566 (567)
..++.+++++++.++. ..+..++.++++++++++|+.|++|..+++++ ||+|++||++|++|+++++....++.++
T Consensus 435 ~~~~~~~a~vv~~~~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~~~~ 511 (511)
T 3e7w_A 435 GTVEYLIAAIVPEEHE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHHHHHH 511 (511)
T ss_dssp SSCCEEEEEEEECCCC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTCC---
T ss_pred CCceEEEEEEEecccc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhcccccCC
Confidence 8889999999988775 33444566889999999999999999999888 9999999999999999999887776553
No 14
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.9e-77 Score=623.13 Aligned_cols=483 Identities=26% Similarity=0.371 Sum_probs=409.8
Q ss_pred cCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
+|+.++|+++++++||++|+.+. ++++||+||++++.++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 2 ~tl~~~l~~~a~~~p~~~a~~~~~~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~ 81 (504)
T 1t5h_X 2 QTVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVP 81 (504)
T ss_dssp CCHHHHHHHHHHHCTTSEEEEETTTTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEE
T ss_pred CcHHHHHHHHHHhCCCceEEEEcCCCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Confidence 47999999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEE--cccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMV--DQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEY 175 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 175 (567)
+|+++.++.+++.++++.++++++++ +.+..+.+. .... . ..++.+++
T Consensus 82 vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~-------~-~~~~~~~~------------------- 131 (504)
T 1t5h_X 82 ALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIF---QSGS-------G-ARIIFLGD------------------- 131 (504)
T ss_dssp EEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHH---HHCC-------C-CEEEEGGG-------------------
T ss_pred EecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhh---hccc-------c-ceeEEecc-------------------
Confidence 99999999999999999999999999 665433321 1111 1 11222211
Q ss_pred HHHHhcC----CCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhcc--CCCcEEEEecCccchh
Q 008389 176 EKFLQTG----DPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGM--NEGAVYLWTLPMFHCN 249 (567)
Q Consensus 176 ~~~l~~~----~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~--~~~d~~~~~~p~~~~~ 249 (567)
++... ...........++++++++|||||||.||+|.++|+++.+.+......+++ ++++++++.+|++|.+
T Consensus 132 --~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 209 (504)
T 1t5h_X 132 --LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVV 209 (504)
T ss_dssp --TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHH
T ss_pred --hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcc
Confidence 11110 000111123467899999999999999999999999999988888777888 8899999999999999
Q ss_pred hhH-HHHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWC-YTWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~-~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
|+. ..+.++..|+++++.+.+++..+++.|+++++|+++++|+++..|++.... .... ++++|.+++||+++++++
T Consensus 210 g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-l~~lr~~~~gG~~l~~~~ 288 (504)
T 1t5h_X 210 GFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLK-LDSLRHVTFAGATMPDAV 288 (504)
T ss_dssp HHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCC-CTTCCEEEECCTTCCHHH
T ss_pred hHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhcccccccc-CccccEEEEcCCcCCHHH
Confidence 984 566677788888888889999999999999999999999999999876422 2223 889999999999999999
Q ss_pred HHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC--CccCCCCCceE
Q 008389 327 LHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ--QPVPADGKTIG 403 (567)
Q Consensus 327 ~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~--~~~~~~~~~~G 403 (567)
.+.+.+. ++++++.||+||++. +.... ....++.|.|.+++ +++|+|.+.+ ++++.| +.|
T Consensus 289 ~~~~~~~~~~~~~~~YG~TE~~~-~~~~~-------------~~~~~~~g~p~~~~-~~~i~~~~~~~~~~~~~g--~~G 351 (504)
T 1t5h_X 289 LETVHQHLPGEKVNIYGTTEAMN-SLYMR-------------QPKTGTEMAPGFFS-EVRIVRIGGGVDEIVANG--EEG 351 (504)
T ss_dssp HHHHHHHCCSEEEEEEEETTTEE-EEEEE-------------SCSSSSEEBCCTTC-CEEEECTTSCTTCBCCTT--CCE
T ss_pred HHHHHHhcCcceeeeeccccccc-ccccc-------------CCCCCccccCCCCC-ceeEEeccCCCCCcCCCC--Ccc
Confidence 9999854 899999999999832 22111 01236789999999 8999997632 888888 789
Q ss_pred EEEEe-cccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 404 EIVMS-GNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 404 ei~v~-~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
||+++ |+.++.||+++++.+.+.|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++
T Consensus 352 El~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~ 431 (504)
T 1t5h_X 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVV 431 (504)
T ss_dssp EEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEE
T ss_pred eEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEE
Confidence 99999 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHH
Q 008389 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAK 557 (567)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~ 557 (567)
|++.+++..|+.++++|+++++. ..+. +++++++++ +|+.|++|+.+++++ ||+|++||++|++|++++.
T Consensus 432 Vv~~~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 432 VIGLADQRWGQSVTACVVPRLGE-TLSA----DALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EEEEECSSSSEEEEEEEEECTTC-CCCH----HHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred EEEeecCCCCcEEEEEEEecCCc-CcCH----HHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 99999998899999999998765 3444 678899998 999999999999888 9999999999999999864
No 15
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.2e-77 Score=639.34 Aligned_cols=513 Identities=20% Similarity=0.281 Sum_probs=426.3
Q ss_pred CHHHHHhhhhhcCCCceeEEE------CCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 21 TPLWFLDRAATVHPTRTSVVH------GSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
++.++|+++++++||++|+++ ..+++||+||++++.++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 77 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~G 156 (652)
T 1pg4_A 77 LAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIG 156 (652)
T ss_dssp HHHHHTGGGHHHHTTSEEEEEECSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcC
Confidence 357899999999999999998 23789999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch---------HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccch
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF---------KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLK 165 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 165 (567)
++++|+++.++.+++.+++++++++++|+++... +.+.+...... ......++.++.......
T Consensus 157 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 157 AVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPN-----VTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTT-----CCSCCEEEEECSSCCCCC---
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCC-----cCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999987643 22222221110 002345666654321100
Q ss_pred hccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHH-HHHHHhccCCCcEEEEecC
Q 008389 166 YALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSL-SVALIWGMNEGAVYLWTLP 244 (567)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~-~~~~~~~~~~~d~~~~~~p 244 (567)
........|++++....... ...+..++++++|+|||||||.||||+++|++++.... .....++++++|++++..|
T Consensus 229 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~ 306 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASPEH-QPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTAD 306 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCSCC-CCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred -ccCCCceeHHHHHhhcCCCC-CccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccC
Confidence 00112345777776443221 22334678999999999999999999999999887664 3445688999999999999
Q ss_pred ccchhhhH-HHHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhhc
Q 008389 245 MFHCNGWC-YTWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVNT 317 (567)
Q Consensus 245 ~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~~ 317 (567)
++|..|+. ..+.+++.|+++++... +++..+++.|+++++|+++++|++++.|++.... ...+ +++||.+++
T Consensus 307 ~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~-l~sLr~i~~ 385 (652)
T 1pg4_A 307 VGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTD-RSSLRILGS 385 (652)
T ss_dssp TTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCC-CTTCCEEEE
T ss_pred CeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCC-cCceEEEEE
Confidence 99999984 45567778888888754 5899999999999999999999999999987542 2233 899999999
Q ss_pred cCCCCCHHHHHHHHh-cC---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCC
Q 008389 318 AGAAPPPSVLHAMSQ-KG---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQ 393 (567)
Q Consensus 318 ~G~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~ 393 (567)
|||++++++.+++.+ ++ +++++.||+||+++.++...... .....+++|.|++++ +++|+|++ |+
T Consensus 386 gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~---------~~~~~~s~G~p~~g~-~v~i~d~~-g~ 454 (652)
T 1pg4_A 386 VGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGA---------IELKAGSATRPFFGV-QPALVDNE-GH 454 (652)
T ss_dssp ESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGGSSCSBCCCTTT---------CCBCTTCCBSBCTTC-CEEEECTT-CC
T ss_pred ecCCCCHHHHHHHHHHhCCCCCcEEccccCcccccceecCCCCC---------cCccCCccccCcCCC-eEEEECCC-CC
Confidence 999999999999985 46 89999999999987665432110 112347899999999 89999987 99
Q ss_pred ccCCCCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHH
Q 008389 394 PVPADGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEV 468 (567)
Q Consensus 394 ~~~~~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~i 468 (567)
+++.| +.|||+|+| |.++.|||++++.+...| .+|||+|||+|++++||+++++||+||+||++|++|+|.||
T Consensus 455 ~v~~g--~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eI 532 (652)
T 1pg4_A 455 PQEGA--TEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEI 532 (652)
T ss_dssp BCCSS--EEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHH
T ss_pred CcCCC--ceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHH
Confidence 99887 899999999 789999999998887765 37999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccc
Q 008389 469 ENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKI 547 (567)
Q Consensus 469 E~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi 547 (567)
|++|.++|+|.+++|++.+++..|+.++++|+++++.. .+ +++.++|+++++++|+.|++|..|++++ ||+|++||+
T Consensus 533 E~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~-~~-~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi 610 (652)
T 1pg4_A 533 ESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEE-PS-PELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKI 610 (652)
T ss_dssp HHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-CC-HHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCB
T ss_pred HHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCC-CC-HHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccc
Confidence 99999999999999999999888999999999987752 21 2345789999999999999999999888 999999999
Q ss_pred cHHHHHHHHHHc
Q 008389 548 QKHVLRAKAKEM 559 (567)
Q Consensus 548 ~r~~l~~~~~~~ 559 (567)
+|++|++++.+.
T Consensus 611 ~R~~L~~~~~~~ 622 (652)
T 1pg4_A 611 MRRILRKIAAGD 622 (652)
T ss_dssp CHHHHHHHHHTC
T ss_pred hHHHHHHHHhCC
Confidence 999999998865
No 16
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.8e-77 Score=628.08 Aligned_cols=503 Identities=22% Similarity=0.332 Sum_probs=423.5
Q ss_pred cC-HHHHHhhhhhc-----CCCceeEEEC-----CccccHHHHHHHHHHHHHHHHHc-cCCCCCEEEEEcCChHHHHHHH
Q 008389 20 LT-PLWFLDRAATV-----HPTRTSVVHG-----STRYTWLQTYQRCRRLASALCKR-SIGLGCTVAIIAPNIPAIYEAH 87 (567)
Q Consensus 20 ~t-~~~~l~~~a~~-----~p~~~a~~~~-----~~~~Ty~el~~~~~~lA~~L~~~-g~~~gd~V~l~~~~~~~~~~~~ 87 (567)
++ +.++|++++++ +||++|+++. ++++||+||.++++++|+.|.+. |+++||+|+++++|++++++++
T Consensus 37 ~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~~~~ 116 (570)
T 3c5e_A 37 FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVI 116 (570)
T ss_dssp CCHHHHTHHHHHHHHHTTSSCCCEEEEEECSSSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHHHHH
T ss_pred ccHHHHHHHHHHhhccccCCCCceEEEEEcCCCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHHHHH
Confidence 44 46899999998 9999999983 37899999999999999999998 9999999999999999999999
Q ss_pred HhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 88 FGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 88 lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
|||+++|++++|+++.++.+++.++++.++++++|++.+..+.+......++ ....++.++....
T Consensus 117 lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 117 LGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECP-------SLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGCT-------TCCEEEEESSSCC--------
T ss_pred HHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcCC-------ceeEEEEecccCc--------
Confidence 9999999999999999999999999999999999999887665544322222 3344555543211
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHH--HHHHHHHHhccCCCcEEEEecCc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYL--MSLSVALIWGMNEGAVYLWTLPM 245 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~--~~~~~~~~~~~~~~d~~~~~~p~ 245 (567)
.+...+++++........ .....++++++|+|||||||.||+|.++|+ ++. ..... ..++++++|++++..|+
T Consensus 182 --~~~~~~~~~~~~~~~~~~-~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~~~d~~~~~~p~ 256 (570)
T 3c5e_A 182 --DGWLNFKKLLNEASTTHH-CVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQASDIMWTISDT 256 (570)
T ss_dssp --TTSEEHHHHHHHSCSCCC-CCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCCTTCEEEECCCT
T ss_pred --cccccHHHHhhccccccc-ccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCCCCceEEEcCch
Confidence 122346666654433221 123567899999999999999999999999 444 33333 56788999999999999
Q ss_pred cchhhhH-HHHHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCC
Q 008389 246 FHCNGWC-YTWSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAP 322 (567)
Q Consensus 246 ~~~~g~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l 322 (567)
+|..++. ..+.++..|+++++.. .+++..+++.|+++++|++.++|+++..+.+... .... ++++|.+++||+++
T Consensus 257 ~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~-~~~~-~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 257 GWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDL-SSYK-FPHLQNCVTVGESL 334 (570)
T ss_dssp TSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCT-TTCC-CTTCCEEEEESSCC
T ss_pred HHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccc-cccc-cccceEEEEcCCcC
Confidence 9999987 4556677788888775 6899999999999999999999999999998632 2223 78999999999999
Q ss_pred CHHHHHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCc
Q 008389 323 PPSVLHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKT 401 (567)
Q Consensus 323 ~~~~~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~ 401 (567)
++++.+.+.+ +++++++.||+||++..++..... ....+++|.|++++ +++|+|++ |++++.| +
T Consensus 335 ~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~v~i~d~~-g~~~~~G--~ 399 (570)
T 3c5e_A 335 LPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM-----------KIKPGYMGTAASCY-DVQIIDDK-GNVLPPG--T 399 (570)
T ss_dssp CHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-CEEEECTT-SCBCCTT--C
T ss_pred CHHHHHHHHHHhCCchhhccchhhcccceecCccc-----------ccCCCcccccCCCc-eEEEECCC-CCCCCCC--C
Confidence 9999999985 599999999999997554432110 12347899999999 89999977 9999998 8
Q ss_pred eEEEEEe-----cccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCC
Q 008389 402 IGEIVMS-----GNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHP 476 (567)
Q Consensus 402 ~Gei~v~-----~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~ 476 (567)
.|||+++ |+.++.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|
T Consensus 400 ~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p 479 (570)
T 3c5e_A 400 EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHP 479 (570)
T ss_dssp CEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTST
T ss_pred CCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCC
Confidence 8999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 477 AVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 477 ~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
+|.+++|++.+++..|+.++++|++.++......+...++|+++++++|+.|++|+.|.+++ ||+|++||++|++|++.
T Consensus 480 ~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 480 AVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp TEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred CcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence 99999999999988889999999987764222334455889999999999999999999888 99999999999999998
Q ss_pred HHHc
Q 008389 556 AKEM 559 (567)
Q Consensus 556 ~~~~ 559 (567)
+.+.
T Consensus 560 ~~~~ 563 (570)
T 3c5e_A 560 EWKM 563 (570)
T ss_dssp HTC-
T ss_pred HHhh
Confidence 7654
No 17
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=4.4e-77 Score=637.05 Aligned_cols=516 Identities=21% Similarity=0.273 Sum_probs=422.4
Q ss_pred CHHHHHhhhhhcCCCceeEEE------CCccccHHHHHHHHHHHHHHHH-HccCCCCCEEEEEcCChHHHHHHHHhhhhc
Q 008389 21 TPLWFLDRAATVHPTRTSVVH------GSTRYTWLQTYQRCRRLASALC-KRSIGLGCTVAIIAPNIPAIYEAHFGVPMA 93 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~------~~~~~Ty~el~~~~~~lA~~L~-~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~ 93 (567)
++.++|+++++++||++|+++ ..+++||+||++++.++|+.|+ ++|+++||+|+++++|++++++++|||+++
T Consensus 83 ~~~~~l~~~a~~~pd~~Al~~~~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~ 162 (663)
T 1ry2_A 83 ACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRI 162 (663)
T ss_dssp HHHHHTHHHHTTCTTSEEEEEECSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCceEEEEEcCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Confidence 467899999999999999998 2478999999999999999999 999999999999999999999999999999
Q ss_pred CCeeeeccccCChHHHHHHHhccCceEEEEcccchH---------HHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccc
Q 008389 94 GAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK---------LAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDL 164 (567)
Q Consensus 94 G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 164 (567)
|++++|+++.++.+++.+++++++++++|+++.... .+.+....+ .....+++++........
T Consensus 163 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~vi~~~~~~~~~~~- 234 (663)
T 1ry2_A 163 GAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-------PGVRHVLVYRKTNNPSVA- 234 (663)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-------TTCCEEEEECSSCCSSCC-
T ss_pred CCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-------CCCceEEEEecCCCCccc-
Confidence 999999999999999999999999999999876532 222221111 134556666543210000
Q ss_pred hhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHH-HHHHhccCCCcEEEEec
Q 008389 165 KYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLS-VALIWGMNEGAVYLWTL 243 (567)
Q Consensus 165 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~-~~~~~~~~~~d~~~~~~ 243 (567)
........|.+++...... ....+.+++++++|+|||||||.||||+++|++++..... ....++++++|++++..
T Consensus 235 --~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~ 311 (663)
T 1ry2_A 235 --FHAPRDLDWATEKKKYKTY-YPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAG 311 (663)
T ss_dssp --CCSSSEEEHHHHHTTSCSC-CCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECS
T ss_pred --cCCCccccHHHHHhhcCCC-CCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcC
Confidence 0011234567766543322 1223456789999999999999999999999998876644 44567899999999999
Q ss_pred CccchhhhH-HHHHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCC--CCcCCCCchhhhh
Q 008389 244 PMFHCNGWC-YTWSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSE--DTILPLPHVVHVN 316 (567)
Q Consensus 244 p~~~~~g~~-~~~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~--~~~~~l~~lr~i~ 316 (567)
|++|..|+. ..+.+++.|++++++.. +++..+++.|+++++|+++++|++++.|.+.... ...+ +++||.++
T Consensus 312 ~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~-l~sLr~i~ 390 (663)
T 1ry2_A 312 DIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHS-LKSLRCLG 390 (663)
T ss_dssp CTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCC-CTTCCEEE
T ss_pred CcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCC-cCceEEEE
Confidence 999999984 45566778888888754 5889999999999999999999999999886542 2233 89999999
Q ss_pred ccCCCCCHHHHHHHHh-cC---CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC
Q 008389 317 TAGAAPPPSVLHAMSQ-KG---FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392 (567)
Q Consensus 317 ~~G~~l~~~~~~~~~~-~~---~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (567)
++||++++++.+++.+ ++ +++++.||+||+++.++...... ......+++|.|++++ +++|+|+++|
T Consensus 391 ~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~--------~~~~~~gs~G~p~~g~-~v~i~d~~~g 461 (663)
T 1ry2_A 391 SVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGG--------VTPMKPGSASFPFFGI-DAVVLDPNTG 461 (663)
T ss_dssp ECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCSCSEECCTTT--------CCCCCTTCCCEECTTC-CEEEECSSST
T ss_pred EEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccCeeeccCCCC--------CcccCCCccccCcCCC-eEEEEcCCCC
Confidence 9999999999999985 46 89999999999987666542200 0112347899999999 8999998569
Q ss_pred CccCC-CCCceEEEEEec--ccccccccCCCccchhcc---cCCccccCceEEEeCCCcEEEeccccceeeeCceecchH
Q 008389 393 QPVPA-DGKTIGEIVMSG--NVVMKGYLKNPKANEETF---ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSV 466 (567)
Q Consensus 393 ~~~~~-~~~~~Gei~v~~--~~~~~gy~~~~~~~~~~~---~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~ 466 (567)
++++. | +.|||+++| |.++.|||++++.+...| .+|||+|||+|++++||+++++||+||+||++|++|++.
T Consensus 462 ~~v~~~g--~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~ 539 (663)
T 1ry2_A 462 EELNTSH--AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTA 539 (663)
T ss_dssp TCEECSS--CEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHH
T ss_pred CcCCCCC--cceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHH
Confidence 99987 6 789999999 589999999998887776 379999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc--h-h--hHHHHHHHHHHHHhcCCCCCCCceeecCc-cc
Q 008389 467 EVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK--S-N--EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540 (567)
Q Consensus 467 ~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~-~--~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP 540 (567)
|||++|.++|.|.+++|++.+++..|+.++++|+++++... . + .+++.++|+++++++|+.|++|..|++++ ||
T Consensus 540 eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP 619 (663)
T 1ry2_A 540 EIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLP 619 (663)
T ss_dssp HHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCC
T ss_pred HHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCC
Confidence 99999999999999999999998889999999999876520 1 1 11455889999999999999999999888 99
Q ss_pred CCCCccccHHHHHHHHHHc
Q 008389 541 KTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 541 ~t~~GKi~r~~l~~~~~~~ 559 (567)
+|++||++|+.|++++.+.
T Consensus 620 ~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 620 KTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp BCTTSCBCHHHHHHSCC--
T ss_pred CCCccCchHHHHHHHHcCC
Confidence 9999999999999987664
No 18
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.1e-76 Score=621.47 Aligned_cols=479 Identities=18% Similarity=0.264 Sum_probs=407.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++||++|+++.++++||+||.+++.++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 38 ~~~l~~~l~~~a~~~p~~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~v 117 (563)
T 1amu_A 38 DKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYV 117 (563)
T ss_dssp TCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred CCcHHHHHHHHHHHCCCCeEEEeCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+.. .. ....+..+.....
T Consensus 118 pl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~----~~-------~~~~~~~~~~~~~------------------- 167 (563)
T 1amu_A 118 PIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHN----IQ-------FNGQVEIFEEDTI------------------- 167 (563)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTT----SC-------CCSEEEECCCSTT-------------------
T ss_pred EeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhh----cc-------ccCceeeecchhh-------------------
Confidence 99999999999999999999999999876443221 00 1122333222100
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
... .......+..++++++++|||||||.||||.+||+++.+.+......++++++|++++..|++|..++...+.++
T Consensus 168 -~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 245 (563)
T 1amu_A 168 -KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMAL 245 (563)
T ss_dssp -TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHH
T ss_pred -ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHH
Confidence 000 011112235678999999999999999999999999998888888888999999999999999999988777888
Q ss_pred hhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCC
Q 008389 259 ALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGF 335 (567)
Q Consensus 259 ~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~ 335 (567)
+.|+++++... .++..+++.++++++|++.++|+++..+... . ++++|.+++||+++++++.+.+.+. +
T Consensus 246 ~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~-~~~lr~~~~gG~~l~~~~~~~~~~~-~ 317 (563)
T 1amu_A 246 LTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------R-ILSIQTLITAGSATSPSLVNKWKEK-V 317 (563)
T ss_dssp TTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------T-CCSCSEEEEESSCCCHHHHHHHTTT-S
T ss_pred HCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------c-cccccEEEEEEecCCHHHHHHHHhC-C
Confidence 88998888765 6899999999999999999999998877542 2 6789999999999999999999874 8
Q ss_pred eeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccccccc
Q 008389 336 HVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKG 415 (567)
Q Consensus 336 ~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~g 415 (567)
++++.||+||++.+++.+...... .....++|.|++++ +++|+|++ +++++.| +.|||+++|+.++.|
T Consensus 318 ~~~~~YG~TE~~~~~~~~~~~~~~--------~~~~~~vG~p~~~~-~v~i~d~~-~~~~~~g--~~GEl~v~g~~v~~G 385 (563)
T 1amu_A 318 TYINAYGPTETTICATTWVATKET--------IGHSVPIGAPIQNT-QIYIVDEN-LQLKSVG--EAGELCIGGEGLARG 385 (563)
T ss_dssp EEEEEECCGGGSSCSEEEECCSSC--------CCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCCE
T ss_pred eEEEEECcCHHhHhheeeeccccc--------CCCCCcccceeCCC-EEEEECCC-cCCCCCC--CcEEEEEechhhChh
Confidence 999999999998766654322111 11236789999999 89999976 8999988 899999999999999
Q ss_pred ccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeec
Q 008389 416 YLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 416 y~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
||++++.+...|. ++||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.++
T Consensus 386 Y~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~ 465 (563)
T 1amu_A 386 YWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKD 465 (563)
T ss_dssp ETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEC
T ss_pred hCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeec
Confidence 9999999998884 359999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 489 ERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 489 ~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
+..++.++++++...+. +. ++|+++++++|+.|++|..+++++ ||+|++||++|++|++..
T Consensus 466 ~~~~~~~~a~vv~~~~~---~~----~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 466 HQEQPYLCAYFVSEKHI---PL----EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp TTSCEEEEEEEEESSCC---CH----HHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CCCCeEEEEEEEeCCCC---CH----HHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 88889999999876432 33 678999999999999999999888 999999999999998753
No 19
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=6.4e-76 Score=614.83 Aligned_cols=498 Identities=19% Similarity=0.226 Sum_probs=410.3
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++|+++|+.+.++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+++|++++
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v 82 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYI 82 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHCCCCcceecCCCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+ ....++.+ ......
T Consensus 83 pl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~---------------~~~~~~~~------------------~~~~~~ 129 (521)
T 3l8c_A 83 PVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI---------------EGISLVSL------------------SEIESA 129 (521)
T ss_dssp EEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC---------------TTSEEEEH------------------HHHHHH
T ss_pred ecCccccHHHHHHHHHhCCCCEEEecCcccccc---------------ccCcccch------------------hhhhhc
Confidence 999999999999999999999999987653211 00111111 111111
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH--hccCCCcEEEEecCccchhhhHHHHH
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI--WGMNEGAVYLWTLPMFHCNGWCYTWS 256 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--~~~~~~d~~~~~~p~~~~~g~~~~~~ 256 (567)
.....+ ........++++++++|||||||.||+|.+||+++.+.+...... +++..++++++..|++|..++...+.
T Consensus 130 ~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 208 (521)
T 3l8c_A 130 KLAEMP-YERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAP 208 (521)
T ss_dssp HHHTCC-CCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHH
T ss_pred ccccCC-cccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHH
Confidence 111111 112234567899999999999999999999999999887776655 67889999999999999998888778
Q ss_pred HhhhcCeeEEeccC---CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc
Q 008389 257 LAALCGTSICLRQV---TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK 333 (567)
Q Consensus 257 ~~~~g~~~~~~~~~---~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~ 333 (567)
++..|+++++.+.. ++..+++.++++++|++.++|+++..+.......... ++++|.+++||++++++..+.+.+.
T Consensus 209 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 209 TLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAK-MPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTT-CTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhcccccc-CccceEEEEecccCCHHHHHHHHHH
Confidence 88889888887653 8999999999999999999999999998876655555 8899999999999999999998854
Q ss_pred --CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEeccc
Q 008389 334 --GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNV 411 (567)
Q Consensus 334 --~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~ 411 (567)
++++++.||+||+++.++.+.... .........++|.|++++ +++|+|++ |++++.| +.|||+++|+.
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~------~~~~~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~ 357 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITR------EMVDNYTRLPIGYPKPDS-PTYIIDED-GKELSSG--EQGEIIVTGPA 357 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECH------HHHHHCSSCEEEEECTTS-CEEEECTT-SCBCCTT--CCEEEEEESTT
T ss_pred CCCceEEeCcCccHHhhhhceeeccc------ccccCCCccccccccCCC-EEEEECCC-cCCCCCC--CceEEEecccc
Confidence 899999999999987766543221 111122345799999999 89999976 9999998 78999999999
Q ss_pred ccccccCCCccchhcc----cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEee
Q 008389 412 VMKGYLKNPKANEETF----ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARA 487 (567)
Q Consensus 412 ~~~gy~~~~~~~~~~~----~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~ 487 (567)
++.|||++++.+.+.| .+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+
T Consensus 358 v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~ 437 (521)
T 3l8c_A 358 VSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRY 437 (521)
T ss_dssp SCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCC
T ss_pred cChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEee
Confidence 9999999999999888 367999999999999999999999999999999999999999999999999999999887
Q ss_pred cCC-CCCcceEEEEEcCCccch--hhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 488 DER-WGESPCAFVTLKPEVDKS--NEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 488 ~~~-~g~~~~~~v~~~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+.. .++.++++|+++++.... ....+.++|+++++++|+.|++|..+.+++ ||+|++||++|++|++++.+...
T Consensus 438 ~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~ 515 (521)
T 3l8c_A 438 NKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREG 515 (521)
T ss_dssp SSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC----
T ss_pred cCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCc
Confidence 544 358899999998875221 122445789999999999999999999888 99999999999999999877643
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.6e-75 Score=622.54 Aligned_cols=501 Identities=22% Similarity=0.347 Sum_probs=426.6
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
..|+++|+.++|++++. ||++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~~l~~~~~~~a~--pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG 99 (617)
T 3rg2_A 22 GYWQDLPLTDILTRHAA--SDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLG 99 (617)
T ss_dssp TSCCCCCTTHHHHTTTT--CCSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHhhC--CCCeEEecCCceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcC
Confidence 34678999999999987 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccch-----HHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYF-----KLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
++++|+++.++.+++.++++.+++++++++.... ........... ....+.......
T Consensus 100 ~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~----------- 161 (617)
T 3rg2_A 100 VAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHS-------SIRVVQLLNDSG----------- 161 (617)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHST-------TCCEEEEETCCS-----------
T ss_pred eEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCC-------ccceeeeccccc-----------
Confidence 9999999999999999999999999999988654 22222222222 333444443321
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
...+.+......... ...+..++++++++|||||||.||+|.++|+++.+.+......+++.+++++++.+|++|.+
T Consensus 162 --~~~~~~~~~~~~~~~-~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 238 (617)
T 3rg2_A 162 --EHNLQDAINHPAEDF-TATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY 238 (617)
T ss_dssp --TTBHHHHHHSCCSSC-CCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHH
T ss_pred --ccchhhhhccccccc-CCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhh
Confidence 122333333332221 22345678999999999999999999999999999999988899999999999999999998
Q ss_pred hhHH--HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCc-CCCCchhhhhccCCCCCHHH
Q 008389 250 GWCY--TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTI-LPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~--~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~-~~l~~lr~i~~~G~~l~~~~ 326 (567)
++.. .+.+++.|+++++....++..+++.++++++|++.++|+++..+++....... ..++++|.+++|||++++++
T Consensus 239 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 318 (617)
T 3rg2_A 239 AMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATL 318 (617)
T ss_dssp HHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHH
T ss_pred hhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHH
Confidence 8864 67778889999998888999999999999999999999999998875332211 12889999999999999999
Q ss_pred HHHHHh-cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCcee-ccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQ-KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRF-IGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~-~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~-~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+++.+ +++++++.||+||++..++... ..........|.|+ ++. .+.|+|++ +++++.| +.||
T Consensus 319 ~~~~~~~~~~~~~~~YG~tE~~~~~~~~~----------~~~~~~~~~~G~p~~~~~-~~~i~d~~-~~~~p~G--~~GE 384 (617)
T 3rg2_A 319 AARIPAEIGCQLQQVFGMAEGLVNYTRLD----------DSAEKIIHTQGYPMCPDD-EVWVADAE-GNPLPQG--EVGR 384 (617)
T ss_dssp HHHHHHHTCSEEEEEEEETTEEEEECCTT----------SCHHHHHHCCCEESCTTC-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHHhCCcEEEEeccCcceeecccCC----------CcccccccCCCccCCCCc-eEEEECCC-CCCCCCC--CceE
Confidence 999985 4999999999999865433221 11223346789997 666 89999976 9999999 8899
Q ss_pred EEEecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEE
Q 008389 405 IVMSGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASV 483 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v 483 (567)
|+|+|+.++.||+++++.+...| .++||+|||+|++++||.++++||.||+||++|++|+|.|||+.|.++|+|.+++|
T Consensus 385 l~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~v 464 (617)
T 3rg2_A 385 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAAL 464 (617)
T ss_dssp EEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEE
T ss_pred EEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEE
Confidence 99999999999999999999999 68999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHh-cCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 484 VARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRA-KMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 484 ~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~-~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++.+++..|+.++++++..+.. +. .++++++++ .||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 465 v~~~~~~~~~~~~a~vv~~~~~---~~----~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 465 VSMEDELMGEKSCAYLVVKEPL---RA----VQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEETTTEEEEEEEEEESSCC---CH----HHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EeccCcccCeeEEEEEEeCCCC---CH----HHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 9999988889999999987643 23 678889988 699999999999888 999999999999999987653
No 21
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=6.7e-76 Score=615.55 Aligned_cols=500 Identities=25% Similarity=0.327 Sum_probs=407.5
Q ss_pred ccC-HHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALT-PLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t-~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
.++ +.++|+++++ +|+++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|+++
T Consensus 22 ~~~~~~~~l~~~~~-~p~~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~ 100 (529)
T 2v7b_A 22 LFNFAAYLFRLNET-RAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVP 100 (529)
T ss_dssp CCCHHHHHHHHTGG-GTTSEEEECSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEE
T ss_pred ceeHHHHHHHhhhc-cCCceEEEeCCCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceE
Confidence 344 7899999999 99999999989999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCC-CeEEEecCCCCCcccchhccCCChHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKP-PLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
+|+++.++.+++.++++.++++++|++.+..+.+........ .. ..++.++..... ......++
T Consensus 101 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~--------~~~~~~~~ 165 (529)
T 2v7b_A 101 VVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESAE-------HDGCQLIVSQPRESE--------PRLAPLFE 165 (529)
T ss_dssp EECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----------CCEEEEECC--------------CCCBHH
T ss_pred EecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhcc-------ccCceEEEecccccc--------cccccchh
Confidence 999999999999999999999999999887665544332111 12 334443332100 00112455
Q ss_pred HHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHH-HHHHHHHHHHhccCCCcEEEEecCccchhhhHHHH
Q 008389 177 KFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGA-YLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTW 255 (567)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l-~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 255 (567)
+++....... ...+..++++++++|||||||.||+|.++|+++ ..........+++.++|++++.+|++|.+|+...+
T Consensus 166 ~~~~~~~~~~-~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~ 244 (529)
T 2v7b_A 166 ELIDAAAPAA-KAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGL 244 (529)
T ss_dssp HHHHTSCCCS-SCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHT
T ss_pred hhhccCCCcc-cccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHH
Confidence 5555332221 123456789999999999999999999999998 55555454557889999999999999999987654
Q ss_pred -HHhhhcCeeEEe-ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh-
Q 008389 256 -SLAALCGTSICL-RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ- 332 (567)
Q Consensus 256 -~~~~~g~~~~~~-~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~- 332 (567)
..+..|+++++. ..+++..+++.|+++++|++.++|+++..+++........ ..++|.+++||+++++++.+.+.+
T Consensus 245 ~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-~~~lr~~~~gGe~l~~~~~~~~~~~ 323 (529)
T 2v7b_A 245 TFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARA-DVAIRICTSAGEALPREIGERFTAH 323 (529)
T ss_dssp HHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGG-GCCCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccccccc-CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 456677777766 5679999999999999999999999999999865443332 237999999999999999999986
Q ss_pred cCCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccc
Q 008389 333 KGFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVV 412 (567)
Q Consensus 333 ~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~ 412 (567)
+++++++.||+||+++++..+.... ...+++|.|++++ +++|+|++ |++++.| +.|||+++|+.+
T Consensus 324 ~g~~i~~~YG~TE~~~~~~~~~~~~-----------~~~~~~G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~ 388 (529)
T 2v7b_A 324 FGCEILDGIGSTEMLHIFLSNRAGA-----------VEYGTTGRPVPGY-EIELRDEA-GHAVPDG--EVGDLYIKGPSA 388 (529)
T ss_dssp HSCCEEEEEECTTTSSEEEECCTTC-----------CCTTSCCEECTTC-EEEEECTT-SCBCCTT--SCEEEEEECTTC
T ss_pred hCCceeeeEchhhcCceeeccccCC-----------CccCCcccCCCCC-EEEEECCC-CCCCCCC--CccEEEEecCCc
Confidence 5999999999999976654432111 2346899999999 89999976 9999988 889999999999
Q ss_pred cccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCC
Q 008389 413 MKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWG 492 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g 492 (567)
+.||+++++.+...|.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. +...+
T Consensus 389 ~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~ 467 (529)
T 2v7b_A 389 AVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGL 467 (529)
T ss_dssp CCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTE
T ss_pred ccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55567
Q ss_pred CcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 493 ESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 493 ~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
+.+++++++.++.... +...++++++++++|+.|++|..+++++ ||+|++||++|++|++
T Consensus 468 ~~~~a~vv~~~~~~~~--~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 468 VKTRAFVVLKREFAPS--EILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEEECTTCCCC--HHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred eEEEEEEEecCCCCcc--hhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 8899999988764211 1233689999999999999999999888 9999999999999986
No 22
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.1e-76 Score=615.49 Aligned_cols=496 Identities=20% Similarity=0.307 Sum_probs=390.5
Q ss_pred cCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeee
Q 008389 20 LTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNA 99 (567)
Q Consensus 20 ~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~ 99 (567)
||+.++|+++++++||++|+++.++++||+||.+++.++|+.|++. +||+|+++++|++++++++|||+++|++++|
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~~~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vp 77 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAM 77 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECSSCEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHHHHHHhcCCceEEEeCCcEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEe
Confidence 5788899999999999999999999999999999999999999986 8999999999999999999999999999999
Q ss_pred ccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCC-ChHHHHHH
Q 008389 100 VNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGR-GAVEYEKF 178 (567)
Q Consensus 100 i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~ 178 (567)
+++.++.+++.++++.++++++|++.+.......... .. ....+......... ....... .....+..
T Consensus 78 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 146 (501)
T 3ipl_A 78 INTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS-LD-------DIEFAGRDITTNGL---LDNTMGIQYDTSNETV 146 (501)
T ss_dssp CCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE-TT-------C--------------------------------
T ss_pred cCccCCHHHHHHHHHhcCCCEEEEccccccccccccc-cc-------cceeeeeecccccc---cccccccccccchhhc
Confidence 9999999999999999999999998765332110000 00 00000000000000 0000000 00001111
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
...............++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|.+|+...+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 147 VPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp ---CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred cccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 11111111112235678999999999999999999999999999999888889999999999999999999999888888
Q ss_pred hhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeee
Q 008389 259 ALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVT 338 (567)
Q Consensus 259 ~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~ 338 (567)
..|+++++.+.+++..+++.|+++++|++.++|+++..|++...... .++|.+++||+++++++.+.+.+.+++++
T Consensus 227 ~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----~~lr~i~~gG~~l~~~~~~~~~~~~~~~~ 302 (501)
T 3ipl_A 227 IEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP----YNLQKILLGGAKLSATMIETALQYNLPIY 302 (501)
T ss_dssp HHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----TTCCEEEECSSCCCHHHHHHHHHTTCCEE
T ss_pred HcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----CcccEEEEeCCCCCHHHHHHHHHhCCCEe
Confidence 89999999888999999999999999999999999999998654432 37899999999999999999998899999
Q ss_pred eccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccC
Q 008389 339 HTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLK 418 (567)
Q Consensus 339 ~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~ 418 (567)
+.||+||+++.+..+. .........++|.|++++ +++|+|++ .+ +.|||+++|+.++.||++
T Consensus 303 ~~YG~TE~~~~~~~~~---------~~~~~~~~~~~G~p~~~~-~~~i~d~~------~~--~~GEl~v~g~~~~~gY~~ 364 (501)
T 3ipl_A 303 NSFGMTETCSQFLTAT---------PEMLHARPDTVGMPSANV-DVKIKNPN------KE--GHGELMIKGANVMNGYLY 364 (501)
T ss_dssp EEEEEGGGTEEEEEEC---------HHHHHHCTTCCBEECTTC-EEEEESCC------SS--CCEEEEEESTTSCSCCSB
T ss_pred ccccccccccceeecC---------ccccccCCCCCCCCCCCc-EEEEecCC------CC--CccEEEEeccchhhhhCc
Confidence 9999999976554432 222334557899999999 89999976 22 579999999999999999
Q ss_pred CCccchhcccCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEE
Q 008389 419 NPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498 (567)
Q Consensus 419 ~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~ 498 (567)
+++.+.. |.+|||+|||+|++++||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..|+.++++
T Consensus 365 ~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~ 443 (501)
T 3ipl_A 365 PTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLY 443 (501)
T ss_dssp STTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEE
T ss_pred Chhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEE
Confidence 9998887 899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 499 VTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 499 v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
++...+. +. ++++++++++|+.|++|..+.+++ ||+|++||++|++|++..++.
T Consensus 444 v~~~~~~---~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 444 FVSESDI---SK----AQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEESSCC---CH----HHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEeCCCC---CH----HHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9865432 33 688999999999999999999888 999999999999999987764
No 23
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.1e-77 Score=627.43 Aligned_cols=481 Identities=21% Similarity=0.275 Sum_probs=319.7
Q ss_pred ccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeee
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLN 98 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v 98 (567)
..|+.++|+++++++||++|+++.++++||+||+++++++|+.|.++|+++||+|+++++|++++++++|||+++|++++
T Consensus 74 ~~~l~~~l~~~a~~~pd~~A~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v 153 (570)
T 4gr5_A 74 GACVHELFEAQAARAPDAVALLHEADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYT 153 (570)
T ss_dssp SCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHCCCCeEEECCCCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEE
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHHH
Q 008389 99 AVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEKF 178 (567)
Q Consensus 99 ~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (567)
|+++.++.+++.++++.++++++|++.+....+ .....+.+.+...
T Consensus 154 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~---------------~~~~~~~~~~~~~------------------- 199 (570)
T 4gr5_A 154 MLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL---------------TGTTTLYVEDEAA------------------- 199 (570)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS---------------CSSEEEECCC----------------------
T ss_pred EcCCCChHHHHHHHHHhcCCCEEEecchhhhcc---------------cCCcceeeecccc-------------------
Confidence 999999999999999999999999987653311 1111122111100
Q ss_pred HhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHh
Q 008389 179 LQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLA 258 (567)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 258 (567)
.............++++++|+|||||||.||+|.++|+++.+.+.. ...++++++|++++.+|++|..+....+.++
T Consensus 200 --~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 276 (570)
T 4gr5_A 200 --SDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGAL 276 (570)
T ss_dssp ------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHH
T ss_pred --ccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHH
Confidence 0011111223356789999999999999999999999998766544 3456788999999999998877777777788
Q ss_pred hhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc--C
Q 008389 259 ALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK--G 334 (567)
Q Consensus 259 ~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~--~ 334 (567)
+.|+++++.. .+++..+++.|+++++|++.++|+++..|++.... . ++++|.+++||++++++..+.+.+. +
T Consensus 277 ~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~---~-~~~lr~~~~gG~~l~~~~~~~~~~~~~~ 352 (570)
T 4gr5_A 277 LFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE---A-FEGVRYAITGGEPASVPHVAKARRDHPA 352 (570)
T ss_dssp TTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG---G-GTTCSEEEEESSCCCHHHHHHHHHHCTT
T ss_pred hcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh---h-CCCceEEEEecccCCHHHHHHHHHhCCC
Confidence 8888888875 46899999999999999999999999999875432 2 7899999999999999988888754 7
Q ss_pred CeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccc
Q 008389 335 FHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMK 414 (567)
Q Consensus 335 ~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~ 414 (567)
+++++.||+||++++++.+..... ........+|.|++++ +++|+|++ +++++.| +.|||+|+|+.++.
T Consensus 353 ~~l~~~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~v~i~d~~-~~~~~~G--~~GEl~v~g~~v~~ 421 (570)
T 4gr5_A 353 LRLGNGYGPAESMGFTTHHAVVAG-------DLSGTALPIGVPLAGK-RAYVLDDD-LKPAANG--ALGELYVAGAGLAH 421 (570)
T ss_dssp CEEEEEECCGGGCSCSEEEECCGG-------GTTSSSCCCBEECTTE-EEEEECTT-SCBCCTT--CEEEEEEEETTCCC
T ss_pred cEEEEeechhhheeeeeeeeeccc-------ccCCCccccceeeCCC-EEEEECCC-CCCCCCC--CcEEEEEeecccch
Confidence 899999999999877665432211 1112335689999999 89999976 9999998 89999999999999
Q ss_pred cccCCCccchhccc---------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEE
Q 008389 415 GYLKNPKANEETFA---------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVA 485 (567)
Q Consensus 415 gy~~~~~~~~~~~~---------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~ 485 (567)
||+++++.+...|. +|||+|||+|++++||+++++||+||+||++|++|+|.|||++|.++|+|.+++|++
T Consensus 422 GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~ 501 (570)
T 4gr5_A 422 GYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLA 501 (570)
T ss_dssp EETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------
T ss_pred hcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEE
Confidence 99999999998883 269999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHH
Q 008389 486 RADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAK 555 (567)
Q Consensus 486 ~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~ 555 (567)
.+++.+++.++++|+..++....+. ++|+++++++|+.|++|..+++++ ||+|++||++|++|++.
T Consensus 502 ~~~~~~~~~~~a~vv~~~~~~~~~~----~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 502 QDSRLGDKQLVAYVVAERADAPPDA----AELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------------
T ss_pred eeCCCCCeEEEEEEEecCCCCCcCH----HHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 9988888999999987665433444 789999999999999999999888 99999999999999875
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=5.4e-75 Score=615.55 Aligned_cols=480 Identities=16% Similarity=0.185 Sum_probs=396.5
Q ss_pred hhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 15 ANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 15 ~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
..+++.|+.++|+++++++||++|+++.++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|
T Consensus 22 ~~~~~~tl~~~~~~~a~~~Pd~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaG 101 (620)
T 4dg8_A 22 DLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSG 101 (620)
T ss_dssp SGGGSCCHHHHHHHHHHHCTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHhCCCCeEEEcCCCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHH
Q 008389 95 AVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVE 174 (567)
Q Consensus 95 ~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 174 (567)
++++|++|.++.+++.++++.+++++++++....... .....+.+...
T Consensus 102 a~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~---------------~~~~~~~~~~~----------------- 149 (620)
T 4dg8_A 102 HHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA---------------NGLPCVPVRHL----------------- 149 (620)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC---------------TTSCEEEGGGC-----------------
T ss_pred CEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc---------------cCCceeeeccC-----------------
Confidence 9999999999999999999999999999765432110 00111111100
Q ss_pred HHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHH
Q 008389 175 YEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYT 254 (567)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~ 254 (567)
.............++++++++|||||||.||||.++|+++.+.+.. ...+++.++|++++..|++|..++...
T Consensus 150 ------~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~ 222 (620)
T 4dg8_A 150 ------PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEI 222 (620)
T ss_dssp ------CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHH
T ss_pred ------CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHH
Confidence 0001111112346789999999999999999999999999877655 456788999999999999999999888
Q ss_pred HHHhhhcCeeEEec--cCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHh
Q 008389 255 WSLAALCGTSICLR--QVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQ 332 (567)
Q Consensus 255 ~~~~~~g~~~~~~~--~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~ 332 (567)
+.+++.|+++++.. .+++..+++.|+++++|++.++|+++..+++... .. ++++|.+++|||+++++..+.+.+
T Consensus 223 ~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~-l~~lr~v~~gGe~l~~~~~~~~~~ 298 (620)
T 4dg8_A 223 WGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DC-LGGLRQLLTGGDILSVPHVRRALL 298 (620)
T ss_dssp HHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GG-GTTCSEEEEESSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hh-CCCccEEEEEeCcCCHHHHHHHHH
Confidence 88899999988863 5789999999999999999999999999986432 22 789999999999999888887764
Q ss_pred -c-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecc
Q 008389 333 -K-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGN 410 (567)
Q Consensus 333 -~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~ 410 (567)
. ++++++.||+||++..++...... .........+|.|++++ +++|+|++....++.| +.|||+|+|+
T Consensus 299 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-------~~~~~~~~~iG~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i~G~ 368 (620)
T 4dg8_A 299 RHPRLHLVNGYGPTENTTFTCCHVVTD-------DDLEEDDIPIGKAIAGT-AVLLLDEHGQEIAEPD--RAGEIVAFGA 368 (620)
T ss_dssp HCTTCEEEEEECCGGGCSCSEEEECCT-------GGGGSSSCCCBEECTTE-EEEEECTTSCBCCSSS--CCEEEEEEET
T ss_pred hCCCeEEEeeEchhhhhhheEEEeccc-------cccCCCCCCceecccCc-EEEEECccCCCCCCCC--CceEEEEecc
Confidence 3 889999999999987765443221 12223346899999999 8999998844447777 7899999999
Q ss_pred cccccccCCCccchhcccC--------CccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeE
Q 008389 411 VVMKGYLKNPKANEETFAN--------GWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEAS 482 (567)
Q Consensus 411 ~~~~gy~~~~~~~~~~~~~--------g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~ 482 (567)
.++.||+++++.+.+.|.+ +||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++
T Consensus 369 ~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~ 448 (620)
T 4dg8_A 369 GLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCA 448 (620)
T ss_dssp TCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEE
T ss_pred ccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEE
Confidence 9999999999999999954 79999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 483 VVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 483 v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
|++.+++..+ .++++++...+ .+++.++++||.|++|..+++++ ||+|++||++|++|++.+.+.
T Consensus 449 Vv~~~~~~~~-~lv~~~~~~~~-----------~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 514 (620)
T 4dg8_A 449 LLVRERNGVK-QLLCAWTGKAD-----------ASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEP 514 (620)
T ss_dssp EEEEEETTEE-EEEEEEEECTT-----------CCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSC
T ss_pred EEEEeCCCce-EEEEEEecChH-----------HHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhccccc
Confidence 9999887533 34444443221 22345677899999999999888 999999999999999876543
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1e-75 Score=655.87 Aligned_cols=513 Identities=23% Similarity=0.343 Sum_probs=342.9
Q ss_pred ccCHHHHHhhhhhcCCCceeEEEC--CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 19 ALTPLWFLDRAATVHPTRTSVVHG--STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~~~a~~~~--~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
++|+.++|+++++++||++|+++. ++++||+||+++++++|+.|++.|+++||+|+++++|++++++++|||+++|++
T Consensus 60 ~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~ 139 (979)
T 3tsy_A 60 HLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGAT 139 (979)
T ss_dssp TSCHHHHHTTTGGGTTTSEEEEETTTCCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCE
T ss_pred CCCHHHHHHHHHHhCCCCeEEEECCCCcEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCE
Confidence 589999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHH
Q 008389 97 LNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYE 176 (567)
Q Consensus 97 ~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 176 (567)
++|++|.++.+++.++++.++++++|++.+..+.+...... ....++.++...... ...+...+.
T Consensus 140 ~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~------~~~~~~~~~ 204 (979)
T 3tsy_A 140 ATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQND---------DGVVIVCIDDNESVP------IPEGCLRFT 204 (979)
T ss_dssp EEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHT---------SCCEEEECCCCTTSC------CCTTEEEGG
T ss_pred EEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhc---------CCceEEEeCCccccc------CCcccccHH
Confidence 99999999999999999999999999998877665544321 123344444321110 112223344
Q ss_pred HHHhcCCCC--CCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCccchhh
Q 008389 177 KFLQTGDPQ--FDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPMFHCNG 250 (567)
Q Consensus 177 ~~l~~~~~~--~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g 250 (567)
++....... ........++++++|+|||||||.||+|.++|+++.+.+..... .+++.++|++++.+|++|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~ 284 (979)
T 3tsy_A 205 ELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYA 284 (979)
T ss_dssp GTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHH
T ss_pred HHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHH
Confidence 433322210 11223456789999999999999999999999999888766543 346789999999999999999
Q ss_pred hHH-HHHHhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHH
Q 008389 251 WCY-TWSLAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 251 ~~~-~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~ 329 (567)
+.. .+..+..|+++++.+.+++..+++.|+++++|++.++|+++..+++........ ++++|.+++||+++++++.++
T Consensus 285 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-l~~lr~~~~gg~~l~~~~~~~ 363 (979)
T 3tsy_A 285 LNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYD-LSSIRVVKSGAAPLGKELEDA 363 (979)
T ss_dssp HHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSC-CTTCCEEEESSCCCCSSHHHH
T ss_pred HHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCC-ccceEEEEEcCCCCCHHHHHH
Confidence 864 455667788888888899999999999999999999999999999887665555 899999999999999999999
Q ss_pred HHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEE
Q 008389 330 MSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVM 407 (567)
Q Consensus 330 ~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v 407 (567)
+.+. ++++++.||+||++.+++.+..... .......+++|.|++++ +++|+|++++++++.| +.|||+|
T Consensus 364 ~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~------~~~~~~~~~~G~p~~~~-~~~i~d~~~~~~~~~g--~~GEl~i 434 (979)
T 3tsy_A 364 VNAKFPNAKLGQGYGMTEAGPVLAMSLGFAK------EPFPVKSGACGTVVRNA-EMKIVDPDTGDSLSRN--QPGEICI 434 (979)
T ss_dssp HHHHCTTCEEEECEECGGGCSEEEECGGGSS------SCCCCCTTCCCEECSSC-EEEEECTTSCCBCCTT--CCEEEEE
T ss_pred HHHHCCCCeEEeeechhhhhHHHHhCCCCCC------CccccCCCCcCcccCCc-EEEEEeCCCCCCCCCC--CccEEEE
Confidence 9854 8999999999999876655421111 01112347889999999 8999998889999998 7899999
Q ss_pred ecccccccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEe
Q 008389 408 SGNVVMKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVAR 486 (567)
Q Consensus 408 ~~~~~~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~ 486 (567)
+|+.++.||+++++.+...| .+|||+|||+|++++||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++.
T Consensus 435 ~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~ 514 (979)
T 3tsy_A 435 RGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAM 514 (979)
T ss_dssp ESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------
T ss_pred ECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEe
Confidence 99999999999999999999 68999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHcCC
Q 008389 487 ADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEMGP 561 (567)
Q Consensus 487 ~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~~~ 561 (567)
+++..|+.++++|+..++. ..+. ++++++++++|+.|++|..+++++ ||+|++||++|++|++++.+...
T Consensus 515 ~~~~~g~~~~a~vv~~~~~-~~~~----~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 515 KEEAAGEVPVAFVVKSKDS-ELSE----DDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cccCCCcEEEEEEEECCCC-CCCH----HHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 9988899999999987664 3444 688999999999999999999888 99999999999999999877543
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=7.7e-75 Score=602.38 Aligned_cols=475 Identities=24% Similarity=0.335 Sum_probs=384.1
Q ss_pred ccCHHHHHhhhhhcCCC-ceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCee
Q 008389 19 ALTPLWFLDRAATVHPT-RTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVL 97 (567)
Q Consensus 19 ~~t~~~~l~~~a~~~p~-~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~ 97 (567)
-+|+.++|.++++++|+ ++|+++.++++||+||.+++.++|..|. .|++|+++++|++++++++|||+++|+++
T Consensus 21 ~~tl~~~l~~~a~~~p~d~~Al~~~~~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~ 95 (505)
T 3nyq_A 21 MSSLFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAALLAGVAA 95 (505)
T ss_dssp ---CCTTTSSCCCSGGGGSEEEEETTEEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHHHHHTCCE
T ss_pred cchhHHHHHHHHHhCCCCCeEEEECCeeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHHHHhCCEE
Confidence 46788999999999997 9999999999999999999999998874 48899999999999999999999999999
Q ss_pred eeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccCCChHHHHH
Q 008389 98 NAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALGRGAVEYEK 177 (567)
Q Consensus 98 v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (567)
+|+++.++.+++.++++.++++++|++.+.... . .. .....+.+...
T Consensus 96 vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~--~---~~--------~~~~~~~~~~~-------------------- 142 (505)
T 3nyq_A 96 VPLNPKSGDKELAHILSDSAPSLVLAPPDAELP--P---AL--------GALERVDVDVR-------------------- 142 (505)
T ss_dssp EEECTTCCHHHHHHHHHHHCCSEEEECTTCCCC--G---GG--------TTSEEEECCTT--------------------
T ss_pred EEcCCCCCHHHHHHHHHHCCCCEEEECCccccc--h---hh--------ccccccccccc--------------------
Confidence 999999999999999999999999998652100 0 00 11112222111
Q ss_pred HHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHH-HHH
Q 008389 178 FLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCY-TWS 256 (567)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~ 256 (567)
.....+....+++++++++|||||||.||+|.++|+++.+.+......++++++|++++.+|++|..|+.. .+.
T Consensus 143 -----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 217 (505)
T 3nyq_A 143 -----ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILG 217 (505)
T ss_dssp -----CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHH
T ss_pred -----cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHH
Confidence 00011123356789999999999999999999999999999999888999999999999999999999864 566
Q ss_pred HhhhcCeeEEeccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCC--cCCCCchhhhhccCCCCCHHHHHHHHhc-
Q 008389 257 LAALCGTSICLRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDT--ILPLPHVVHVNTAGAAPPPSVLHAMSQK- 333 (567)
Q Consensus 257 ~~~~g~~~~~~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~--~~~l~~lr~i~~~G~~l~~~~~~~~~~~- 333 (567)
.+..|+++++...+++..+++.+ ++++|+++++|+++..+++...... ...++++|.+++||+++++++.+++.+.
T Consensus 218 ~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~ 296 (505)
T 3nyq_A 218 PLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT 296 (505)
T ss_dssp HHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH
T ss_pred HHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc
Confidence 67788888888889999999999 8899999999999999987432211 1126788999999999999999999854
Q ss_pred CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCC-CCCceEEEEEecccc
Q 008389 334 GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPA-DGKTIGEIVMSGNVV 412 (567)
Q Consensus 334 ~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~-~~~~~Gei~v~~~~~ 412 (567)
++++++.||+||++..++..... ....+++|.|++++ +++|+|++ +++++. +.++.|||+++|+.+
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~~~~-----------~~~~~~vG~p~~~~-~~~i~d~~-g~~~~~~~~g~~GEl~v~g~~v 363 (505)
T 3nyq_A 297 GRRVIERYGMTETLMNTSVRADG-----------EPRAGTVGVPLPGV-ELRLVEED-GTPIAALDGESVGEIQVRGPNL 363 (505)
T ss_dssp SCCCEEEEEETTTEEEEECCTTS-----------CCCTTCCCEECTTC-EEEEC------CCCCCCSCCCEEEEEESTTS
T ss_pred CCeeecccchhhcccccccCCCC-----------CCCCCCcccCCCCC-EEEEECCC-CCCcccCCCCceEEEEEecCch
Confidence 99999999999997655443211 12346799999999 89999987 888876 223789999999999
Q ss_pred cccccCCCccchhcc-cCCccccCceEEEeCCCcEEEeccc-cceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCC
Q 008389 413 MKGYLKNPKANEETF-ANGWYHTGDLGVKHPDNYIEIKDRS-KDIIISGGENISSVEVENMMYLHPAVLEASVVARADER 490 (567)
Q Consensus 413 ~~gy~~~~~~~~~~~-~~g~~~TGDl~~~~~~g~l~~~GR~-~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~ 490 (567)
+.||+++++.+...| .+|||+|||+|++++||++++.||. ||+||++|++|+|.|||++|.++|+|.+++|++.+++.
T Consensus 364 ~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~ 443 (505)
T 3nyq_A 364 FTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPD 443 (505)
T ss_dssp CCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETT
T ss_pred hhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCC
Confidence 999999999999999 5899999999999999999999997 58999999999999999999999999999999999999
Q ss_pred CCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHH
Q 008389 491 WGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRA 554 (567)
Q Consensus 491 ~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~ 554 (567)
.|+.++++|++.++....+. ++|+++++++|+.|++|+.+.+++ ||+|++||++|++|++
T Consensus 444 ~g~~l~a~vv~~~~~~~~~~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 444 LGERIVAWIVPADPAAPPAL----GTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TEEEEEEEEEESSTTSCCCH----HHHHHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCcEEEEEEEECCCCCCCCH----HHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 89999999998875434444 789999999999999999999888 9999999999999986
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.8e-73 Score=600.19 Aligned_cols=500 Identities=19% Similarity=0.227 Sum_probs=318.3
Q ss_pred chhhhcccCHHHHHhhhhhcCCCceeEEECC----------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH
Q 008389 13 NAANYMALTPLWFLDRAATVHPTRTSVVHGS----------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA 82 (567)
Q Consensus 13 ~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~----------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~ 82 (567)
....++.+|+.++|+++++++||++|+++.+ +++||+||.++++++|+.|.+.|+ +||+|+++++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 3445668999999999999999999999743 789999999999999999999999 79999999999999
Q ss_pred HHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcc
Q 008389 83 IYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPK 162 (567)
Q Consensus 83 ~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 162 (567)
+++++|||+++|++++|+++.++.+++.++++.++++++|++.+...... ......++..
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------------~~~~~~~~~~-------- 151 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------------LPPETKVLDT-------- 151 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------------CCTTCEEEET--------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------------cCccceeecc--------
Confidence 99999999999999999999999999999999999999999876532110 0011111111
Q ss_pred cchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH--------hccC
Q 008389 163 DLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI--------WGMN 234 (567)
Q Consensus 163 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~--------~~~~ 234 (567)
....+.+.+....... ......++++++|+|||||||.||+|.++|+++.+.+...... +.+.
T Consensus 152 --------~~~~~~~~~~~~~~~~-~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~ 222 (562)
T 3ite_A 152 --------KNQSFIENLSTQDTSD-ILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELG 222 (562)
T ss_dssp --------TCHHHHHHHHHSCCSC-CCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCT
T ss_pred --------cchhhhhhcccccccc-cccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccC
Confidence 1123333333332221 2233456788999999999999999999999998877665543 3477
Q ss_pred CCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCC-HHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchh
Q 008389 235 EGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVT-AKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVV 313 (567)
Q Consensus 235 ~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr 313 (567)
..+++++..|+.|..++...+.++..|++.++..... +..+.+.++++++|++.++|++++.+..... . ++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~~~----~-~~~lr 297 (562)
T 3ite_A 223 GVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLVPE----D-APHLV 297 (562)
T ss_dssp TTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCCGG----G-STTCC
T ss_pred cCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccCcc----c-cCceE
Confidence 8899999999999888887788888888888775543 5778899999999999999999988754432 2 78999
Q ss_pred hhhccCCCCCHHHHHHHHhc-CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCC
Q 008389 314 HVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQ 392 (567)
Q Consensus 314 ~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~ 392 (567)
.+++||+++++++.+.+.+. ++++++.||+||++..++....... ....++|.|++++ .++|+|++++
T Consensus 298 ~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~----------~~~~~~G~p~~~~-~~~i~d~~~~ 366 (562)
T 3ite_A 298 YLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGRILPD----------SDTRCIGHPLGDS-VAHVLAPGSN 366 (562)
T ss_dssp EEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEECCTT----------SCTTEEEEECTTC-EEEEECTTSS
T ss_pred EEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeeeecCC----------CCCccccccCCCC-eEEEEeCCCC
Confidence 99999999999999999865 8999999999999876665433221 1236789999999 8999999889
Q ss_pred CccCCCCCceEEEEEecccccccccCCCccchhcccCC--ccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHH
Q 008389 393 QPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANG--WYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 393 ~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g--~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
++++.| +.|||+++|+.++.|||++++.+...+.+| ||+|||+|++++||++++.||.||+||++|++|+|.|||+
T Consensus 367 ~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 367 EHVKKG--MAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp CBCCTT--SCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC------------------
T ss_pred CCCCCC--CceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHH
Confidence 999998 889999999999999999999888777777 9999999999999999999999999999999999999999
Q ss_pred HHhcC-CCceeeEEEEeecCCCCCcceEEEEEcCCccc--------hhhHHHHHHHHHHHHhcCCCCCCCceeecCc-cc
Q 008389 471 MMYLH-PAVLEASVVARADERWGESPCAFVTLKPEVDK--------SNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LP 540 (567)
Q Consensus 471 ~l~~~-~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--------~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP 540 (567)
+|.++ +.+.+++|++.+++..++..++.++...+... .......++|+++++++|+.|++|+.|++++ ||
T Consensus 445 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP 524 (562)
T 3ite_A 445 VIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIP 524 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCC
Confidence 99998 77888888888888777766666655443211 1112234689999999999999999999888 99
Q ss_pred CC-CCccccHHHHHHHHHHcC
Q 008389 541 KT-ATGKIQKHVLRAKAKEMG 560 (567)
Q Consensus 541 ~t-~~GKi~r~~l~~~~~~~~ 560 (567)
+| ++||++|++|++++.+..
T Consensus 525 ~t~~~GKi~r~~L~~~~~~~~ 545 (562)
T 3ite_A 525 LRDTSAKTDAKALEHMFHTLS 545 (562)
T ss_dssp ---------------------
T ss_pred CCCCCCcchHHHHHHHHhccC
Confidence 98 899999999999988654
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.3e-72 Score=599.52 Aligned_cols=508 Identities=19% Similarity=0.176 Sum_probs=405.5
Q ss_pred hhcccCHHHHHhhhhhcCCCceeEEEC----CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhh
Q 008389 16 NYMALTPLWFLDRAATVHPTRTSVVHG----STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 16 ~~~~~t~~~~l~~~a~~~p~~~a~~~~----~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~ 91 (567)
..+.+|+.++|++++.++||++|+++. ++++||+||.++++++|+.|.+.|+++||+|+++++|++++++++|||+
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~ 86 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCL 86 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEEcCCeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHH
Confidence 356789999999999999999999874 4899999999999999999999999999999999999999999999999
Q ss_pred hcCCeeeeccccC---ChHHHHHHHhccCceEEEEcccchHHHHHHH-HHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 92 MAGAVLNAVNIRL---NAPTIAFLLGHSASAVIMVDQEYFKLAEEAL-KIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 92 ~~G~~~v~i~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++|++++|+++.. +.+++.++++.+++++++++.+....+.... .... ....+..+.......
T Consensus 87 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~------ 153 (590)
T 3kxw_A 87 YAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNP-------KFLKIPAIALESIEL------ 153 (590)
T ss_dssp HTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CC-------EETTEEEEEGGGCCG------
T ss_pred HhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcc-------cccccceeechhccc------
Confidence 9999999999987 4578999999999999999887655433211 0000 011111111110000
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFH 247 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~ 247 (567)
. ...........++++++|+|||||||.||+|.+||+++.+.+......++++++|++++.+|++|
T Consensus 154 -------------~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h 219 (590)
T 3kxw_A 154 -------------N-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHH 219 (590)
T ss_dssp -------------G-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTS
T ss_pred -------------c-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCc
Confidence 0 00001112356789999999999999999999999999999999989999999999999999999
Q ss_pred hhhhHH-HHHHhhhcCeeEEeccC----CHHHHHHHHHhhCceEeeeCcHHHHHHHcCCC---CCCcCCCCchhhhhccC
Q 008389 248 CNGWCY-TWSLAALCGTSICLRQV----TAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPS---EDTILPLPHVVHVNTAG 319 (567)
Q Consensus 248 ~~g~~~-~~~~~~~g~~~~~~~~~----~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~---~~~~~~l~~lr~i~~~G 319 (567)
..|+.. .+..+..|+++++...+ ++..+++.|+++++|++.++|..+..+++... ..... ++++|.+++||
T Consensus 220 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~gg 298 (590)
T 3kxw_A 220 DMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLD-LSSWVTAFNGA 298 (590)
T ss_dssp HHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCC-CTTCCEEEECS
T ss_pred chhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCC-chhhHHHhhCC
Confidence 999986 45555667777766654 78999999999999999999999999876532 22233 88999999999
Q ss_pred CCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCC----------------CChhhhhhhhccCCc
Q 008389 320 AAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDS----------------LPPETQARMKARQGV 376 (567)
Q Consensus 320 ~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~G~ 376 (567)
+++++++.+.+.+. +.++++.||+||++++++.......+.. ...........++|.
T Consensus 299 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 378 (590)
T 3kxw_A 299 EPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGN 378 (590)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCE
T ss_pred CCCCHHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCC
Confidence 99999999998854 3479999999999887765432211000 000112234578899
Q ss_pred eeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccC-------C--ccccCceEEEeCCCcEE
Q 008389 377 RFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFAN-------G--WYHTGDLGVKHPDNYIE 447 (567)
Q Consensus 377 ~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~-------g--~~~TGDl~~~~~~g~l~ 447 (567)
|+++ ++|+|++++++++.| +.|||+|+|+.++.|||++++.+...|.+ | ||+|||+|+++ +|.++
T Consensus 379 p~~~---v~i~d~~~~~~~~~g--~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~ 452 (590)
T 3kxw_A 379 PIQE---VKIIDPDTLIPCDFD--QVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELY 452 (590)
T ss_dssp ESSE---EEEECTTTCCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEE
T ss_pred CCCC---eEEEcCCCCcCCCCC--CEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEE
Confidence 9987 688999889999998 88999999999999999999999999853 5 99999999999 99999
Q ss_pred EeccccceeeeCceecchHHHHHHH-hcCCCce--eeEEEEeecCCCCCcceEEEEEcCCc-cchhhHHHHHHHHHHHHh
Q 008389 448 IKDRSKDIIISGGENISSVEVENMM-YLHPAVL--EASVVARADERWGESPCAFVTLKPEV-DKSNEQQLAEDIMKFCRA 523 (567)
Q Consensus 448 ~~GR~~d~i~~~G~~v~~~~iE~~l-~~~~~i~--~~~v~~~~~~~~g~~~~~~v~~~~~~-~~~~~~~~~~~l~~~l~~ 523 (567)
+.||.||+||++|++|+|.+||++| ..+|.|. +++|++.+++. ++.++++++..++. ...+. +++.+++++
T Consensus 453 ~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~----~~l~~~l~~ 527 (590)
T 3kxw_A 453 VTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQ----DNLFNEIFE 527 (590)
T ss_dssp EEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-EEEEEEEEEESCTTCCHHHH----HHHHHHHHH
T ss_pred EEcCccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-CceEEEEEEeccccccchhH----HHHHHHHHH
Confidence 9999999999999999999999999 7889998 79999998876 78889999888764 23444 455566666
Q ss_pred cCCC-CCCCc-eeecC--c-ccCCCCccccHHHHHHHHHHcCCc
Q 008389 524 KMPA-YWVPK-SIVFG--P-LPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 524 ~l~~-~~~p~-~i~~~--~-lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
+++. +..|. .+.++ + ||+|++||++|++|++++.+....
T Consensus 528 ~l~~~~~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~~~~ 571 (590)
T 3kxw_A 528 LVYENHQLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDKTLP 571 (590)
T ss_dssp HHHHHHSCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHcCCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcCCCc
Confidence 6553 55664 44443 4 999999999999999999887654
No 29
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.9e-71 Score=587.97 Aligned_cols=502 Identities=21% Similarity=0.224 Sum_probs=403.0
Q ss_pred cccCHHHHHhhhhhcCCCceeEEEC---CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcC
Q 008389 18 MALTPLWFLDRAATVHPTRTSVVHG---STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAG 94 (567)
Q Consensus 18 ~~~t~~~~l~~~a~~~p~~~a~~~~---~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G 94 (567)
...|+.++|++++.++|+.+++... ++++||+||+++++++|+.|+++|+++||+|+++++|++++++++|||+++|
T Consensus 19 ~~~tl~~~l~~~a~~~p~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 98 (576)
T 3gqw_A 19 DFPTLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAG 98 (576)
T ss_dssp CCSSHHHHHHHHTTSSCEEEEECTTSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhhCCCCeEEeCCCCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhC
Confidence 3569999999999999999998753 3899999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccccCC-------hHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhc
Q 008389 95 AVLNAVNIRLN-------APTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYA 167 (567)
Q Consensus 95 ~~~v~i~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (567)
++++|+++.++ .+++.++++.++++++|++.+....+....... ..+..+.
T Consensus 99 ~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~----------~~~~~~~------------ 156 (576)
T 3gqw_A 99 LVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN----------PELHVLS------------ 156 (576)
T ss_dssp CEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC----------TTCEEEE------------
T ss_pred CeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC----------Ccceecc------------
Confidence 99999999998 789999999999999999998776655432211 1111111
Q ss_pred cCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH-hccCCCcEEEEecCcc
Q 008389 168 LGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI-WGMNEGAVYLWTLPMF 246 (567)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~-~~~~~~d~~~~~~p~~ 246 (567)
..+.+ .............++++++|+|||||||.||+|.++|+++.+++...... ++++++|++++.+|++
T Consensus 157 -----~~~~~---~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 228 (576)
T 3gqw_A 157 -----HAWFK---ALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFY 228 (576)
T ss_dssp -----HHHHH---TSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTT
T ss_pred -----hhhhh---cccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCcc
Confidence 01111 11111112223467899999999999999999999999999888777655 7899999999999999
Q ss_pred chhhhHHHHHHhhh-cCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCC---CcCCCCchhhhhcc
Q 008389 247 HCNGWCYTWSLAAL-CGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSED---TILPLPHVVHVNTA 318 (567)
Q Consensus 247 ~~~g~~~~~~~~~~-g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~---~~~~l~~lr~i~~~ 318 (567)
|.+|+...+..++. |+++++... +++..+++.|+++++|++.++|+++..+.+..... ... ++++|.+++|
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~-l~~lr~~~~g 307 (576)
T 3gqw_A 229 HDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELD-LSCWRVAGIG 307 (576)
T ss_dssp SHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCC-CTTCCEEEEC
T ss_pred ccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCC-hhhhHhhhcc
Confidence 99999876665555 444444442 58899999999999999999999998887654322 223 7899999999
Q ss_pred CCCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCCC---------------C--hhhhhhhhccC
Q 008389 319 GAAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDSL---------------P--PETQARMKARQ 374 (567)
Q Consensus 319 G~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~~~~ 374 (567)
|+++++++.+++.+. ++++++.||+||+++.++.+......... + .........++
T Consensus 308 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 387 (576)
T 3gqw_A 308 AEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNC 387 (576)
T ss_dssp SSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBC
T ss_pred CccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeec
Confidence 999999999998854 67899999999998877655432211100 0 00001122478
Q ss_pred CceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCCCcEEEeccccc
Q 008389 375 GVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPDNYIEIKDRSKD 454 (567)
Q Consensus 375 G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d 454 (567)
|.|++++ +++|+|.+ |++++.| +.|||+++|+.++.||+++++.+...+.+|||+|||+|++ +||.++++||.||
T Consensus 388 G~p~~~~-~~~i~d~~-g~~~~~g--~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd 462 (576)
T 3gqw_A 388 GKALPEH-GIEIRNEA-GMPVAER--VVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKD 462 (576)
T ss_dssp CEECTTC-EEEEECTT-SCBCCTT--BCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTT
T ss_pred CCcCCCC-eEEEECCC-CCCCCCC--CeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcc
Confidence 9999999 89999965 9999998 8999999999999999999998888889999999999999 6999999999999
Q ss_pred eeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcC-CCCCCCce
Q 008389 455 IIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKM-PAYWVPKS 533 (567)
Q Consensus 455 ~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~p~~ 533 (567)
+||++|++|+|.+||++|.++|+|.+++|++..... +...++++..... .... +++++.+++++ +.++.|..
T Consensus 463 ~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~--~~~~~~~~~~~~~-~~~~----~~l~~~l~~~l~~~~~~p~~ 535 (576)
T 3gqw_A 463 LIIIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQ--EKIILQIQCRISD-EERR----GQLIHALAARIQSEFGVTAA 535 (576)
T ss_dssp CEEETTEEECHHHHHHHHTTSSSCCTTSEEEEECTT--SCEEEEEECCCCC-HHHH----HHHHHHHHHHHHHHHSCCEE
T ss_pred eEEECCEEECHHHHHHHHHhCcccccccEEEEEcCC--ccEEEEEEEecCc-hhHH----HHHHHHHHHHHHHHhCCcee
Confidence 999999999999999999999999999988887764 3455555544332 2233 56777777777 57888988
Q ss_pred eecCc---ccCCCCccccHHHHHHHHHHcCCc
Q 008389 534 IVFGP---LPKTATGKIQKHVLRAKAKEMGPV 562 (567)
Q Consensus 534 i~~~~---lP~t~~GKi~r~~l~~~~~~~~~~ 562 (567)
+.+++ ||+|++||++|++|++++.+....
T Consensus 536 i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 536 IDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp EEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred EEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 77653 999999999999999999876443
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.4e-71 Score=632.52 Aligned_cols=492 Identities=22% Similarity=0.272 Sum_probs=415.1
Q ss_pred cccchhhhcccCHHHHHhhhhhcCCCceeEEECCccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHh
Q 008389 10 LPKNAANYMALTPLWFLDRAATVHPTRTSVVHGSTRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFG 89 (567)
Q Consensus 10 ~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA 89 (567)
++....+.+..|+.++|++++.++||++|+++.++++||+||+++++++|+.|.+.|+++|++|+|++++++++++++||
T Consensus 454 ~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp TSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 44445556678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEecCCCCCcccchhccC
Q 008389 90 VPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIGDESCDPKDLKYALG 169 (567)
Q Consensus 90 ~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 169 (567)
|+++|++++|++|.++.+++.++++.+++++++++.+....+.. +. .....+.+++..
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~----~~-------~~~~~~~~~~~~----------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAE----LP-------YTGTTLFIDDQT----------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTT----CC-------CCSEEEESSCGG-----------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhc----cC-------CCCcEEEecccc-----------
Confidence 99999999999999999999999999999999998765432110 00 112223222110
Q ss_pred CChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchh
Q 008389 170 RGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCN 249 (567)
Q Consensus 170 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 249 (567)
. ... ....+.....++++++++|||||||.||||.++|+++.+. ......++++++|+++...|++|..
T Consensus 592 ----~----~~~--~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~l~~~~~~fd~ 660 (1304)
T 2vsq_A 592 ----R----FEE--QASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTFLSVSNYAFDA 660 (1304)
T ss_dssp ----G----GGS--CSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEEEECSCTTSTH
T ss_pred ----c----ccc--ccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEEEEECCccHHH
Confidence 0 000 1111223356789999999999999999999999998865 4444567889999999999999988
Q ss_pred hhHHHHHHhhhcCeeEEecc---CCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHH
Q 008389 250 GWCYTWSLAALCGTSICLRQ---VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSV 326 (567)
Q Consensus 250 g~~~~~~~~~~g~~~~~~~~---~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~ 326 (567)
+....+.+++.|+++++.+. .++..+.+.|+++++|++.++|+++..+.+... .. ++++|.+++|||+++++.
T Consensus 661 ~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~-~~~lr~~~~gGe~l~~~~ 736 (1304)
T 2vsq_A 661 FTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DW-MKGLRCILFGGERASVPH 736 (1304)
T ss_dssp HHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HH-HHTCSEEEEESSCCCHHH
T ss_pred HHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hc-CCCccEEEEecCCCCHHH
Confidence 88888888889999888854 689999999999999999999999999986422 12 678999999999999999
Q ss_pred HHHHHhc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEE
Q 008389 327 LHAMSQK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGE 404 (567)
Q Consensus 327 ~~~~~~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Ge 404 (567)
.+.+.+. ++++++.||+||++..++....... ........+|.|++++ .+.|+|++ ++++|.| +.||
T Consensus 737 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~-------~~~~~~~~iG~p~~~~-~~~i~d~~-~~~~p~G--~~GE 805 (1304)
T 2vsq_A 737 VRKALRIMGPGKLINCYGPTEGTVFATAHVVHDL-------PDSISSLPIGKPISNA-SVYILNEQ-SQLQPFG--AVGE 805 (1304)
T ss_dssp HHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCC-------CSSCSSCCCBEECTTE-EEEEECTT-SCBCCTT--CCEE
T ss_pred HHHHHHhCCCCEEEEeEChhHHhHHheeeeccCc-------cccCCCCCCceeeCCC-EEEEECCC-cCCCCCC--CceE
Confidence 9988754 5799999999999877665432210 0111235789999999 89999987 8999998 8899
Q ss_pred EEEecccccccccCCCccchhccc-------CCccccCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHHhcCCC
Q 008389 405 IVMSGNVVMKGYLKNPKANEETFA-------NGWYHTGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMMYLHPA 477 (567)
Q Consensus 405 i~v~~~~~~~gy~~~~~~~~~~~~-------~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~ 477 (567)
|+|+|+.+++||+++++.+.++|. ++||+|||+|++++||.++++||.||+||++|++|+|.|||++|.++|+
T Consensus 806 l~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~ 885 (1304)
T 2vsq_A 806 LCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPG 885 (1304)
T ss_dssp EEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSS
T ss_pred EEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCC
Confidence 999999999999999999999883 3599999999999999999999999999999999999999999999999
Q ss_pred ceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHH
Q 008389 478 VLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKA 556 (567)
Q Consensus 478 i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~ 556 (567)
|.+++|++.++...+..++++++..... +. ++++++++++||.|++|..+++++ ||+|+|||++|++|++..
T Consensus 886 V~~a~V~~~~~~~~~~~l~a~vv~~~~~---~~----~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L~~~~ 958 (1304)
T 2vsq_A 886 VKDAVVVADRHESGDASINAYLVNRTQL---SA----EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPD 958 (1304)
T ss_dssp CCEEEEEEECCSSSCCEEEEEEECSSSS---CH----HHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCCCCCC
T ss_pred CceEEEEEEecCCCCEEEEEEEeCCCCC---CH----HHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhcCCcc
Confidence 9999999999888888999999876532 33 678999999999999999999888 999999999999987643
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.8e-59 Score=483.74 Aligned_cols=409 Identities=19% Similarity=0.203 Sum_probs=314.1
Q ss_pred cccccchhhhcccCHHHHHhhhhhcCCCceeEEECC---------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcC
Q 008389 8 DDLPKNAANYMALTPLWFLDRAATVHPTRTSVVHGS---------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAP 78 (567)
Q Consensus 8 ~~~~~~~~~~~~~t~~~~l~~~a~~~p~~~a~~~~~---------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~ 78 (567)
...+....+++.+|+.++|+++++++||++|+++.+ +++||+||.++++++|+.|++.|+ +||+|+++++
T Consensus 12 ~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~ 90 (480)
T 3t5a_A 12 SGLVPRGSHMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAP 90 (480)
T ss_dssp ------------CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECC
T ss_pred CCCCcccCCCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcC
Confidence 344556778889999999999999999999999865 899999999999999999999996 9999999999
Q ss_pred ChHHHHHHHHhhhhcCCeeeeccc---cCChHHHHHHHhccCceEEEEcccchHHHHHHHHHHhhhcCCCCCCCeEEEec
Q 008389 79 NIPAIYEAHFGVPMAGAVLNAVNI---RLNAPTIAFLLGHSASAVIMVDQEYFKLAEEALKIMEEKSNGRFKPPLLIVIG 155 (567)
Q Consensus 79 ~~~~~~~~~lA~~~~G~~~v~i~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 155 (567)
|++++++++|||+++|++++|+++ .++.+++.++++.++++++|++.+....+.+........ ....++.++
T Consensus 91 n~~e~~~~~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 165 (480)
T 3t5a_A 91 QGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGE-----SPPSIIEVD 165 (480)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC-----------CCEEEEGG
T ss_pred CcHHHHHHHHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccc-----cccceeEec
Confidence 999999999999999999999999 788999999999999999999998776655432211100 112333332
Q ss_pred CCCCCcccchhccCCChHHHHHHHhcCCCCCCCCCCCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCC
Q 008389 156 DESCDPKDLKYALGRGAVEYEKFLQTGDPQFDWKPPQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNE 235 (567)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~ 235 (567)
.... ............++++++|+|||||||.||+|.+||+++.+++......+++..
T Consensus 166 ~~~~----------------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~ 223 (480)
T 3t5a_A 166 LLDL----------------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADT 223 (480)
T ss_dssp GSCT----------------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTT
T ss_pred cccc----------------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhcccc
Confidence 2110 001111123356789999999999999999999999999999988888888777
Q ss_pred ------CcEEEEecCccchhhhHHH-HHHhhhcCeeEEecc----CCHHHHHHHHHhhCceEeeeCcHHHHHHHcC----
Q 008389 236 ------GAVYLWTLPMFHCNGWCYT-WSLAALCGTSICLRQ----VTAKAVYSAIAKYGVTHFCAAPVVLNSIVNA---- 300 (567)
Q Consensus 236 ------~d~~~~~~p~~~~~g~~~~-~~~~~~g~~~~~~~~----~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~---- 300 (567)
+|++++.+|++|.+|+... +.+++.|+++++..+ .++..+++.++++++| +..+|+++..++..
T Consensus 224 ~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~ 302 (480)
T 3t5a_A 224 DGIPPPNSALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD 302 (480)
T ss_dssp TTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT
T ss_pred ccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc
Confidence 9999999999999998754 555666777777654 3899999999999999 88999998888753
Q ss_pred CCCCCcCCCCchhhhhccCCCCCHHHHHHHHhc-------CCeeeeccCCccCcCCcccccCCCCCCCC--Chh------
Q 008389 301 PSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQK-------GFHVTHTYGLSETYGPSTVCAWKPEWDSL--PPE------ 365 (567)
Q Consensus 301 ~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~-------~~~i~~~YG~tE~~~~~~~~~~~~~~~~~--~~~------ 365 (567)
....... +++||.+++||+++++++.+++.+. ++++++.||+||+++.++........... ...
T Consensus 303 ~~~~~~~-l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 381 (480)
T 3t5a_A 303 DDMAGRD-LGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGH 381 (480)
T ss_dssp GGGTTCC-CTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTB
T ss_pred ccccccc-hhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCc
Confidence 2222333 8999999999999999999999854 24799999999998776654332110000 000
Q ss_pred ------hhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcc------------
Q 008389 366 ------TQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETF------------ 427 (567)
Q Consensus 366 ------~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~------------ 427 (567)
.......++|.|++ + +++|+|++++++++.| +.|||+|+|+.++.|||++++.+.+.|
T Consensus 382 ~~~~~~~~~~~~~~~G~p~~-~-~~~ivd~~~g~~~~~g--~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~ 457 (480)
T 3t5a_A 382 AKPCAGGGATSLISYMLPRS-P-IVRIVDSDTCIECPDG--TVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTP 457 (480)
T ss_dssp CCCCCSSSCEEEECEECCSS-S-EEEEEETTTTEECCTT--BCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCC
T ss_pred eeecCCCCcceeeecCcccC-C-EEEEEcCCCCcCCCCC--CEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCC
Confidence 00234568999999 8 8999999989999998 899999999999999999999999998
Q ss_pred cCCccccCceEEEeCCCcEEEecc
Q 008389 428 ANGWYHTGDLGVKHPDNYIEIKDR 451 (567)
Q Consensus 428 ~~g~~~TGDl~~~~~~g~l~~~GR 451 (567)
.+|||+|||+|+++ ||+|+++||
T Consensus 458 ~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 458 EGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp CCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCCeeeccceeeEE-CCEEEEeCC
Confidence 46799999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=2.5e-53 Score=419.70 Aligned_cols=315 Identities=19% Similarity=0.188 Sum_probs=266.5
Q ss_pred cCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHHhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEeccCCHH
Q 008389 194 EWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALIWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQVTAK 273 (567)
Q Consensus 194 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~~~~~ 273 (567)
.+++++|+|||||||.||+|.+||+++.+++......++++++|++++.+|++|.+|+...+.++..|+++++..+. .
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~--~ 113 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPT--A 113 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCC--S
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcc--c
Confidence 36899999999999999999999999999999999999999999999999999999999888889999998887542 2
Q ss_pred HHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCHHHHHHHHhcCCeeeeccCCccCcCCcccc
Q 008389 274 AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPPSVLHAMSQKGFHVTHTYGLSETYGPSTVC 353 (567)
Q Consensus 274 ~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~ 353 (567)
..++.|+++++|++.++|+++..+++...... . ++++|.+++||+++++++.+++.++++++++.||+||+++.++..
T Consensus 114 ~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~-~-l~~lr~v~~gG~~l~~~~~~~~~~~~~~~~~~YG~TEt~~~~~~~ 191 (358)
T 4gs5_A 114 NPLAGLDHADFDFVAMVPMQLQSILENSATSG-Q-VDRLGKVLLGGAPVNHALAMQISDLAMPVYQSYGMTETVSHVALK 191 (358)
T ss_dssp CTTTTCSSCCCSEEEECHHHHHHHHHCTTTGG-G-GGGGCSEEECSSCCCHHHHHHHHTCSSCEEEEEECGGGSSEEEEE
T ss_pred cHHHHHHHhCCeEEEcChHHHHHhhccccccc-c-CCcceEEEEcccCCCchheecccccCceEEeccccccccceeecc
Confidence 23567899999999999999999998765332 3 899999999999999999999999999999999999998776654
Q ss_pred cCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccchhcccCCccc
Q 008389 354 AWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYH 433 (567)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~ 433 (567)
.... ...+.+|.+.|++ .+.+. +.||++++|+.. .+|||+
T Consensus 192 ~~~~-----------~~~g~~~~~~pgv-~~~~~-------------~~Gel~~~g~~~---------------~~g~~~ 231 (358)
T 4gs5_A 192 ALNG-----------PEASELYVFLPGI-QYGVD-------------ERGCLHISGAVT---------------NGQTVQ 231 (358)
T ss_dssp ECSS-----------TTCCSCEEECTTC-EEEEC-------------TTSEEEEESGGG---------------TTCCEE
T ss_pred cccc-----------cccceeeccCCCe-EEEec-------------CcCceEEecccc---------------cCccee
Confidence 3221 1236678888887 55542 348999988643 368999
Q ss_pred cCceEEEeCCCcEEEeccccceeeeCceecchHHHHHHH---hcCCCceeeEEE-EeecCCCCCcceEEEEEcCCccchh
Q 008389 434 TGDLGVKHPDNYIEIKDRSKDIIISGGENISSVEVENMM---YLHPAVLEASVV-ARADERWGESPCAFVTLKPEVDKSN 509 (567)
Q Consensus 434 TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l---~~~~~i~~~~v~-~~~~~~~g~~~~~~v~~~~~~~~~~ 509 (567)
|||+|+++++| ++++||.||+||++|++|+|.+||+.| .++|.|.+++|+ +.+++..|+.++++|+.... ...
T Consensus 232 TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~--~~~ 308 (358)
T 4gs5_A 232 TNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP--EAL 308 (358)
T ss_dssp EEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC--HHH
T ss_pred cCCccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC--CcC
Confidence 99999999888 667799999999999999999999877 467999998876 67788888899998875443 222
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCceeecCc-ccCCCCccccHHHHHHHHHHc
Q 008389 510 EQQLAEDIMKFCRAKMPAYWVPKSIVFGP-LPKTATGKIQKHVLRAKAKEM 559 (567)
Q Consensus 510 ~~~~~~~l~~~l~~~l~~~~~p~~i~~~~-lP~t~~GKi~r~~l~~~~~~~ 559 (567)
. ++|+++++++|+.|++|+.|++++ ||+|++||++|++|++++.+.
T Consensus 309 ~----~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 309 T----ERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp H----HHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred H----HHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 2 689999999999999999999888 999999999999999988764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=7.4e-48 Score=393.12 Aligned_cols=329 Identities=19% Similarity=0.220 Sum_probs=257.7
Q ss_pred CCc-CceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCccchhhhH-HHHHHhhhcCeeEE
Q 008389 192 QDE-WQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPMFHCNGWC-YTWSLAALCGTSIC 266 (567)
Q Consensus 192 ~~~-~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~~~~~g~~-~~~~~~~~g~~~~~ 266 (567)
.+. +++++++|||||||.||+|.++|+++.+...... ..+++.++|++++..|+.|..+.. ..+.+...|++++.
T Consensus 82 ~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~ 161 (436)
T 3qov_A 82 GDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVP 161 (436)
T ss_dssp SCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEEC
T ss_pred CCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEe
Confidence 455 8999999999999999999999999977766553 345889999999999986655544 55556677888777
Q ss_pred eccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHhc-CCeeeeccCCc
Q 008389 267 LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQK-GFHVTHTYGLS 344 (567)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~~-~~~i~~~YG~t 344 (567)
....++..+++.|+++++|++.++|+++..|++........ .++++|.+++|||++++++.+.+.+. ++++++.||+|
T Consensus 162 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 241 (436)
T 3qov_A 162 AAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMT 241 (436)
T ss_dssp CCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEG
T ss_pred CCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcch
Confidence 77889999999999999999999999999998764333221 26789999999999999999999965 99999999999
Q ss_pred cCcCCcccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccch
Q 008389 345 ETYGPSTVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424 (567)
Q Consensus 345 E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~ 424 (567)
|+++.+....... ....+.+.+++ .++|+|++++++++.| +.|||+++|. +.
T Consensus 242 E~~~~~~~~~~~~-------------~~g~~~~~~~~-~v~i~d~~~g~~~~~g--~~Gel~v~~~------------~~ 293 (436)
T 3qov_A 242 EMNGPGVAFECQE-------------QNGMHFWEDCY-LVEIIDPETGEPVPEG--EIGELVLTTL------------DR 293 (436)
T ss_dssp GGTEEEEEEECTT-------------CSSEEECTTTE-EEEEECTTTCSBCSTT--CCEEEEEEES------------SC
T ss_pred hhcCCeeEEecCC-------------CCeeEEccCce-EEEEEECCCCCCCCCC--CceEEEEecc------------Cc
Confidence 9965422221110 01244455678 8999998889999998 7899999983 23
Q ss_pred hcccCCccccCceEEEeCCC------c---EEEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcc
Q 008389 425 ETFANGWYHTGDLGVKHPDN------Y---IEIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESP 495 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~g------~---l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~ 495 (567)
..|.++||+|||+|+++++| + +++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.+
T Consensus 294 ~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l 373 (436)
T 3qov_A 294 EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEM 373 (436)
T ss_dssp CSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEE
T ss_pred CCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEE
Confidence 44568999999999999998 5 69999999999999999999999999999999999999999988878899
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHHHhcCCCC-CCCceeecCc---ccCCCCccccHHH
Q 008389 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFGP---LPKTATGKIQKHV 551 (567)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~~---lP~t~~GKi~r~~ 551 (567)
+++|++. +. ..+...-.+++++.++++|+.+ ..|..+.+++ ||+|+ ||++|..
T Consensus 374 ~a~v~~~-~~-~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 374 IVEVELS-DL-STDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEC-TT-CCCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEc-Cc-cccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999998 54 2221111245666666666666 6777777654 99999 9998853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=1.6e-47 Score=391.51 Aligned_cols=330 Identities=17% Similarity=0.188 Sum_probs=266.0
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH---HhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL---IWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~---~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (567)
..++++++++|||||||.||+|.++|+++......... .++++++|++++.+|+ .|..++...+.+...|++++..
T Consensus 89 ~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 89 VPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp SCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred CChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 46789999999999999999999999998776554433 5788999999999998 5677777777777888888887
Q ss_pred ccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCcc
Q 008389 268 RQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLSE 345 (567)
Q Consensus 268 ~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~tE 345 (567)
...++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+.+.+ +++++++.||+||
T Consensus 169 ~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE 248 (443)
T 2y4o_A 169 SGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSE 248 (443)
T ss_dssp CSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchh
Confidence 7889999999999999999999999999998754322222 1578999999999999999999985 4999999999999
Q ss_pred CcCC-cccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccch
Q 008389 346 TYGP-STVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKANE 424 (567)
Q Consensus 346 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~ 424 (567)
+++. +...... . ....+.+.+++ .++|+|+++|++++.| +.|||+++|. +.
T Consensus 249 ~~g~~~~~~~~~-~------------~~g~~~~~~~~-~~~i~d~~~g~~~~~G--~~Gel~v~~~------------t~ 300 (443)
T 2y4o_A 249 VMGPGVACECVE-T------------KDGPVIWEDHF-YPEIIDPVTGEVLPDG--SQGELVFTSL------------TK 300 (443)
T ss_dssp TTEEEEEEECTT-T------------CCSEEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------SC
T ss_pred hcCCeEEeccCC-C------------CCceEEccCCe-EEEEEcCCCCCCCCCC--CceEEEEeCC------------Cc
Confidence 8543 2221110 0 00123344677 8999998889999988 7899999983 22
Q ss_pred hcccCCccccCceEEEeCC-CcE-----EEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEE
Q 008389 425 ETFANGWYHTGDLGVKHPD-NYI-----EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAF 498 (567)
Q Consensus 425 ~~~~~g~~~TGDl~~~~~~-g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~ 498 (567)
..|.++||+|||+|+++++ |++ ++.||.||+|+++|++|+|.+||++|.++|+|.++++++.+++..++.++++
T Consensus 301 ~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~ 380 (443)
T 2y4o_A 301 EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLA 380 (443)
T ss_dssp SSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEE
T ss_pred ccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEE
Confidence 3456789999999999999 986 8999999999999999999999999999999999999988877667889999
Q ss_pred EEEcC--Cc--cchhhHHHHHHHHHHHHhcCCCC-CCCceeecC--c-ccCCCCccccHHHHH
Q 008389 499 VTLKP--EV--DKSNEQQLAEDIMKFCRAKMPAY-WVPKSIVFG--P-LPKTATGKIQKHVLR 553 (567)
Q Consensus 499 v~~~~--~~--~~~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~-lP~t~~GKi~r~~l~ 553 (567)
|++.+ +. ...+. ++++++++++|+.+ ..|..+.++ + ||+|++||++|+..+
T Consensus 381 v~~~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 381 VELRSEAAASVTDGER----AALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDR 439 (443)
T ss_dssp EEECHHHHTTCCHHHH----HHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEEC
T ss_pred EEECCcccccchhhHH----HHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEec
Confidence 99875 32 12233 56777777777765 477777665 3 999999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.2e-47 Score=389.69 Aligned_cols=328 Identities=18% Similarity=0.149 Sum_probs=267.1
Q ss_pred CCCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEE
Q 008389 191 PQDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSIC 266 (567)
Q Consensus 191 ~~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~ 266 (567)
...++++++++|||||||.||+|.++|+++........ ..++++++|++++.+|+ +|..++...+.+...|++++.
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34668999999999999999999999999877665443 35788999999999998 677777777777788888887
Q ss_pred eccCCHHHHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcC-CCCchhhhhccCCCCCHHHHHHHHh-cCCeeeeccCCc
Q 008389 267 LRQVTAKAVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTIL-PLPHVVHVNTAGAAPPPSVLHAMSQ-KGFHVTHTYGLS 344 (567)
Q Consensus 267 ~~~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~-~l~~lr~i~~~G~~l~~~~~~~~~~-~~~~i~~~YG~t 344 (567)
....++..+++.|+++++|++.++|+++..|++........ .++++|.+++||+++++++.+.+.+ +++++++.||+|
T Consensus 166 ~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~T 245 (437)
T 2y27_A 166 FGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLS 245 (437)
T ss_dssp CCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEET
T ss_pred CCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCch
Confidence 77789999999999999999999999999998754322222 1478999999999999999999985 599999999999
Q ss_pred cCcCC-cccccCCCCCCCCChhhhhhhhccCCceeccccceeEeeCCCCCccCCCCCceEEEEEecccccccccCCCccc
Q 008389 345 ETYGP-STVCAWKPEWDSLPPETQARMKARQGVRFIGLEKLDVIDTRTQQPVPADGKTIGEIVMSGNVVMKGYLKNPKAN 423 (567)
Q Consensus 345 E~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~i~d~~~~~~~~~~~~~~Gei~v~~~~~~~gy~~~~~~~ 423 (567)
|+++. ++...... ....+.+.+++ .++|+|+++|++++.| +.|||+++|. +
T Consensus 246 E~~g~~~~~~~~~~-------------~~g~~~~~~~~-~~~i~d~~~g~~~~~g--~~Gel~v~~~------------t 297 (437)
T 2y27_A 246 EVMGPGVASECVET-------------KDGPTIWEDHF-YPEIIDPETGEVLPDG--ELGELVFTSL------------T 297 (437)
T ss_dssp TTTEEEEEECCTTT-------------CSSCEECTTTE-EEEEECTTTCCBCCTT--CCEEEEEEES------------S
T ss_pred hhcCCeeEEecCCC-------------CCceeEccCce-EEEEEcCCCCCCCCCC--CccEEEEecC------------C
Confidence 98543 22211100 01234455677 8999998889999988 7899999983 2
Q ss_pred hhcccCCccccCceEEEeC-CCcE-----EEeccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceE
Q 008389 424 EETFANGWYHTGDLGVKHP-DNYI-----EIKDRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCA 497 (567)
Q Consensus 424 ~~~~~~g~~~TGDl~~~~~-~g~l-----~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~ 497 (567)
...|.++||+|||+|++++ +|++ ++.||.||+|+++|++|+|.+||++|.++|+|.++++++.+++..++.+++
T Consensus 298 ~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a 377 (437)
T 2y27_A 298 KEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL 377 (437)
T ss_dssp CSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEE
T ss_pred cCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEE
Confidence 3345689999999999998 6985 899999999999999999999999999999999999998887777788999
Q ss_pred EEEEcCCccc--hhhHHHHHHHHHHHHhcCCCC-CCCceeecC--c-ccCCCCccccHHH
Q 008389 498 FVTLKPEVDK--SNEQQLAEDIMKFCRAKMPAY-WVPKSIVFG--P-LPKTATGKIQKHV 551 (567)
Q Consensus 498 ~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~~-~~p~~i~~~--~-lP~t~~GKi~r~~ 551 (567)
+|++.++... .+. ++++++++++|+.+ ..|..+.++ + ||+|+ ||++|..
T Consensus 378 ~v~~~~~~~~~~~~~----~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 378 NVEPCPETAPDTAAI----QVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EECBCTTTTTCHHHH----HHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEECCCccchhhhH----HHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9998776421 233 56777788888777 588777776 3 99999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=3.7e-30 Score=256.30 Aligned_cols=236 Identities=16% Similarity=0.124 Sum_probs=179.2
Q ss_pred CCcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHH---HHhccCCCcEEEEecCc-cchhhhHHHHHHhhhcCeeEEe
Q 008389 192 QDEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVA---LIWGMNEGAVYLWTLPM-FHCNGWCYTWSLAALCGTSICL 267 (567)
Q Consensus 192 ~~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~---~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~~~~g~~~~~~ 267 (567)
..++++++++|||||||.||+|.++|+++........ ..+++.++|++++.+|+ +|..|+...+.+...|+ .++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 3567889999999999999999999999988877543 45578899999999999 99999988777777777 6666
Q ss_pred ccCCHH-----------------------HHHHHHHhhCceEeeeCcHHHHHHHcCCCCCCcCCCCchhhhhccCCCCCH
Q 008389 268 RQVTAK-----------------------AVYSAIAKYGVTHFCAAPVVLNSIVNAPSEDTILPLPHVVHVNTAGAAPPP 324 (567)
Q Consensus 268 ~~~~~~-----------------------~~~~~i~~~~~t~l~~~p~~~~~l~~~~~~~~~~~l~~lr~i~~~G~~l~~ 324 (567)
..+++. .+++.|+++++|++.++|+++..|++........ ++++|.+++|||++++
T Consensus 167 ~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 IDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQM-KQSLAQITLGGTELNL 245 (369)
T ss_dssp CCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHH-HHHCSEEEEESSCCCH
T ss_pred ccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccc-cCCeeEEEECCccCCH
Confidence 667777 8888999999999999999999998874322233 6789999999999999
Q ss_pred HHHHHHH-hc--CCeeeeccCCccCcCCcccccCCCCCCCCChhhhhhhhccCCce------eccccceeEeeCCCCCcc
Q 008389 325 SVLHAMS-QK--GFHVTHTYGLSETYGPSTVCAWKPEWDSLPPETQARMKARQGVR------FIGLEKLDVIDTRTQQPV 395 (567)
Q Consensus 325 ~~~~~~~-~~--~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~------~~~~~~~~i~d~~~~~~~ 395 (567)
++++.+. +. ++++++.||+||+++++..+.. .++|.| ++++ .++|+|+++++++
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~----------------~~~G~~~~~~~~~~~~-~v~ivD~~~g~~v 308 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI----------------TSESQQVIYDSFSPFI-TYDVVDSITAQTV 308 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB----------------CTTCSSCEEECCTTTE-EEEEECTTTCSBC
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc----------------ccCCCcccccCCCCCe-EEEEECCCCCcCC
Confidence 9999998 66 8999999999999866543321 136778 8898 8999999779999
Q ss_pred CCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCC--C-------cEEEeccccceeeeCce
Q 008389 396 PADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPD--N-------YIEIKDRSKDIIISGGE 461 (567)
Q Consensus 396 ~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~--g-------~l~~~GR~~d~i~~~G~ 461 (567)
+.| +.|||+|++.....-. -+|+|||++...+. | .+..++|.++..++.|.
T Consensus 309 p~G--~~GEl~vt~l~~~~~l-------------~ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 309 EYG--ERGNVIVTHLSPWAFY-------------PRVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp CTT--CEEEEEEEEEETTEEE-------------EEEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred CCC--CceEEEEEEcCccccc-------------ccccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 998 8999999985321111 13899999988653 2 34566777777776663
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.53 E-value=2.3e-14 Score=114.33 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=74.0
Q ss_pred ccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccc--hhhHHHHHHHHHHHHhcCCC
Q 008389 450 DRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDK--SNEQQLAEDIMKFCRAKMPA 527 (567)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~--~~~~~~~~~l~~~l~~~l~~ 527 (567)
.|.||+|+++|.+++|.+||++|.++|+|.++++++.++..+++.+.++++..++... ...+++.+++++.+++.+.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~g- 79 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEIL- 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHS-
T ss_pred CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhC-
Confidence 4899999999999999999999999999999999999999889999999998887522 2234556667777766553
Q ss_pred CCCCceeecCc---ccCCCCccccH
Q 008389 528 YWVPKSIVFGP---LPKTATGKIQK 549 (567)
Q Consensus 528 ~~~p~~i~~~~---lP~t~~GKi~r 549 (567)
.+..+.+++ |||| +||++|
T Consensus 80 --v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 80 --VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp --SCCEEEEECTTCSCCC----CCC
T ss_pred --CccceEEEcCCeecCC-CCCcch
Confidence 333444442 9998 699987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.50 E-value=4.5e-14 Score=112.39 Aligned_cols=96 Identities=19% Similarity=0.286 Sum_probs=73.5
Q ss_pred ccccceeeeCceecchHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCcc---chhhHHHHHHHHHHHHhcCC
Q 008389 450 DRSKDIIISGGENISSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVD---KSNEQQLAEDIMKFCRAKMP 526 (567)
Q Consensus 450 GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~---~~~~~~~~~~l~~~l~~~l~ 526 (567)
||.||+|+++|.+++|.+||+++.++|+|.++++++.+++.+++.+++++++ ++.. ..+.+++.+.+++.+.+.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~~~ 79 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDEIL 79 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccCEEEECCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHhhC
Confidence 8999999999999999999999999999998888888877777899999998 6531 13445666777777776653
Q ss_pred CCCCCceeecCc---ccCCCCccccHH
Q 008389 527 AYWVPKSIVFGP---LPKTATGKIQKH 550 (567)
Q Consensus 527 ~~~~p~~i~~~~---lP~t~~GKi~r~ 550 (567)
- +..+.+++ ||+| +||++|.
T Consensus 80 ~---~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 80 V---TPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp S---CCEEEEECTTCSCCC----CCCE
T ss_pred C---ceEEEEECCCCccCC-CCceEEE
Confidence 2 22555543 9999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.89 E-value=1.3e-08 Score=103.77 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=63.9
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
+..| +.+||+++.. .|+|+ |++||+++++. ...+.+.||.++++++.|+++++.+||+
T Consensus 393 Ve~G--~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~ 454 (609)
T 4b2g_A 393 VEVG--KEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQK 454 (609)
T ss_dssp CCTT--CEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred cCCC--CeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHH
Confidence 4455 7899999764 36665 99999999984 4689999999999999999999999999
Q ss_pred HHhcC------CC--ceeeEEEEeecCCCCCcceEEEEEc
Q 008389 471 MMYLH------PA--VLEASVVARADERWGESPCAFVTLK 502 (567)
Q Consensus 471 ~l~~~------~~--i~~~~v~~~~~~~~g~~~~~~v~~~ 502 (567)
++.+. .+ |.|..+....... +..-+++.++.
T Consensus 455 av~~a~~~l~~~g~~l~eft~~~d~~~~-p~Hyv~~wEl~ 493 (609)
T 4b2g_A 455 AVDNASKLLREVNTSVVEYTSFADTKTI-PGHYVIYWELL 493 (609)
T ss_dssp HHHHHHHGGGGTTEEEEEEEEEEECSSS-SCEEEEEEEEE
T ss_pred HHHHHHHhhhccCCeEEEEEEecCCCCC-CCcEEEEEEEe
Confidence 88732 22 5566654332221 22334455654
No 40
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.78 E-value=3.4e-08 Score=100.37 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=64.7
Q ss_pred cCCCCCceEEEEEecccccccccCCCccchhcccCCccccCceEEEeCC----CcEEEeccccceeeeCceecchHHHHH
Q 008389 395 VPADGKTIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHPD----NYIEIKDRSKDIIISGGENISSVEVEN 470 (567)
Q Consensus 395 ~~~~~~~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~----g~l~~~GR~~d~i~~~G~~v~~~~iE~ 470 (567)
+..| +.+|++++... |.|+ |++||+.+++.- ..+.+.||.++++++.|++++..+||+
T Consensus 388 ve~G--~~YelviTt~~---GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~ 449 (581)
T 4epl_A 388 VKIG--EEYEVVITNYA---GLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQL 449 (581)
T ss_dssp CCTT--CEEEEEEESTT---SCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHH
T ss_pred cCCC--CeEEEEEeecc---ceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHH
Confidence 4445 78999998753 5554 999999999852 579999999999999999999999999
Q ss_pred HHhcC------C--CceeeEEEEeecCCCCCcceEEEEEcC
Q 008389 471 MMYLH------P--AVLEASVVARADERWGESPCAFVTLKP 503 (567)
Q Consensus 471 ~l~~~------~--~i~~~~v~~~~~~~~g~~~~~~v~~~~ 503 (567)
++.+. . .|.|..+...... ....-+++.++..
T Consensus 450 al~~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~ 489 (581)
T 4epl_A 450 SVESAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISG 489 (581)
T ss_dssp HHHHHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESS
T ss_pred HHHHHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecC
Confidence 98742 2 3667666553222 1223344456643
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.77 E-value=2.9e-08 Score=101.26 Aligned_cols=59 Identities=10% Similarity=0.126 Sum_probs=51.4
Q ss_pred ceEEEEEecccccccccCCCccchhcccCCccccCceEEEeC----CCcEEEeccccceeeeCceecchHHHHHHHhcC
Q 008389 401 TIGEIVMSGNVVMKGYLKNPKANEETFANGWYHTGDLGVKHP----DNYIEIKDRSKDIIISGGENISSVEVENMMYLH 475 (567)
Q Consensus 401 ~~Gei~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~ 475 (567)
+.+|+++++. .|.|+ |++||+.+++. ...+.|.||.++++++.|++++..+||+++.+.
T Consensus 385 ~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 385 CTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp CEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC
T ss_pred ceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHH
Confidence 7899999875 35554 99999999986 358999999999999999999999999999754
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.70 E-value=0.98 Score=44.82 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=78.3
Q ss_pred CCCceeEEEC--C-------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhcCCeeeecc
Q 008389 33 HPTRTSVVHG--S-------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMAGAVLNAVN 101 (567)
Q Consensus 33 ~p~~~a~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~ 101 (567)
.++.++++.. + ..+|.+.+...+..++..+...++.++|++...++-+ ...+...++++..|+.+++++
T Consensus 88 ~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 167 (437)
T 2y27_A 88 PQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFG 167 (437)
T ss_dssp CGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEECCC
T ss_pred ChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEeCC
Confidence 4566665541 1 4589999998888888888788999999999988853 344556788899999988776
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHHHH
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (567)
. .+++.+...+++.++.++++.+.....+.+.
T Consensus 168 ~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~ 199 (437)
T 2y27_A 168 G-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADE 199 (437)
T ss_dssp S-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred C-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHH
Confidence 5 4788999999999999999988776655543
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=91.20 E-value=1.1 Score=44.47 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=72.5
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEE
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVI 121 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~v 121 (567)
..+|.+.+...+..++..+...|+.++|++...++-+ ...+...++++..|+.+++++. .+++.+...+++.++.++
T Consensus 110 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~i~~~~~t~l 188 (443)
T 2y4o_A 110 VGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPMSG-GQTEKQVQLIRDFEPKII 188 (443)
T ss_dssp EEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECCCS-CCHHHHHHHHHHHCCSEE
T ss_pred EecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEECCC-CCHHHHHHHHHHhCCcEE
Confidence 4589999998888888888788999999999988853 3445567888899999887765 478899999999999999
Q ss_pred EEcccchHHHHH
Q 008389 122 MVDQEYFKLAEE 133 (567)
Q Consensus 122 i~~~~~~~~~~~ 133 (567)
+..+.....+.+
T Consensus 189 ~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 189 LVTPSYMLNLID 200 (443)
T ss_dssp EECHHHHHHHHH
T ss_pred EECHHHHHHHHH
Confidence 998877665544
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=91.17 E-value=1 Score=44.69 Aligned_cols=99 Identities=9% Similarity=-0.021 Sum_probs=78.5
Q ss_pred CceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCC--hHHHHHHHHhhhhcCCeeeecccc
Q 008389 35 TRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPN--IPAIYEAHFGVPMAGAVLNAVNIR 103 (567)
Q Consensus 35 ~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~--~~~~~~~~lA~~~~G~~~v~i~~~ 103 (567)
+.+|++.. +..+|.+.+...+..++..+...++.++|++....+- ....+..+++++..|+.+++.+.
T Consensus 86 ~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~- 164 (436)
T 3qov_A 86 RDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA- 164 (436)
T ss_dssp HHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS-
T ss_pred CCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC-
Confidence 66676542 1458999999988888888888899999999998874 34455567888999999887754
Q ss_pred CChHHHHHHHhccCceEEEEcccchHHHHHH
Q 008389 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134 (567)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (567)
..++.+...+++.++.+++..+.....+.+.
T Consensus 165 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 195 (436)
T 3qov_A 165 GNSKRQIKFISDFKTTALHAIPSYAIRLAEV 195 (436)
T ss_dssp CCHHHHHHHHHHHTCCEEECCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCEEEECHHHHHHHHHH
Confidence 4778899999999999999988876665543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=79.52 E-value=12 Score=37.71 Aligned_cols=97 Identities=9% Similarity=0.061 Sum_probs=73.0
Q ss_pred cCCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH-HHHHHHhhhhcCCeeeecc
Q 008389 32 VHPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA-IYEAHFGVPMAGAVLNAVN 101 (567)
Q Consensus 32 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~-~~~~~lA~~~~G~~~v~i~ 101 (567)
..++.+|++.. +..+|++.+...+...... .++.++|++...+|-.-. .+..+++++..|+..+..+
T Consensus 160 ~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 236 (501)
T 3ipl_A 160 FNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKES---LGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVD 236 (501)
T ss_dssp CCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHH---TCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHh---hCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeCC
Confidence 35678887762 2568999888776665544 488999999988876533 2344678888999888765
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHH
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (567)
..+++.+...+++.++..+...+.....+.
T Consensus 237 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 266 (501)
T 3ipl_A 237 -KFNAEQILTMIKNERITHISLVPQTLNWLM 266 (501)
T ss_dssp -SCCHHHHHHHHHHSCCCEEEECHHHHHHHH
T ss_pred -CCCHHHHHHHHHHcCCcEEEchHHHHHHHH
Confidence 578999999999999999999887665544
No 46
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=78.96 E-value=20 Score=36.44 Aligned_cols=97 Identities=8% Similarity=-0.017 Sum_probs=72.3
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChH--HHHH-HHHhhhhcCCeeeec
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP--AIYE-AHFGVPMAGAVLNAV 100 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~--~~~~-~~lA~~~~G~~~v~i 100 (567)
.|+.+|++.. +..+|.+.+...+...... .++.++|++...+|-+- .+.. .+++++..|+..+..
T Consensus 180 ~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 256 (539)
T 1mdb_A 180 KSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEV---CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLS 256 (539)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHh---hCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEEEC
Confidence 4677777652 2568999887776655543 47889999988887653 3333 578889999988866
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHH
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE 133 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (567)
+ ..+++.+...+++.++.++...+.....+..
T Consensus 257 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 288 (539)
T 1mdb_A 257 P-SPSPDDAFPLIEREKVTITALVPPLAMVWMD 288 (539)
T ss_dssp S-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHh
Confidence 4 5788999999999999999988877665544
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=77.58 E-value=18 Score=36.69 Aligned_cols=97 Identities=9% Similarity=-0.016 Sum_probs=72.3
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH--HHH-HHHhhhhcCCeeeec
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA--IYE-AHFGVPMAGAVLNAV 100 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~--~~~-~~lA~~~~G~~~v~i 100 (567)
.++.+|++.. +..+|.+.+...+...+.. .++.++|++...+|-... +.. .+++++..|+..+..
T Consensus 189 ~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v~~ 265 (544)
T 3o83_A 189 PADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA 265 (544)
T ss_dssp CTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEEEC
T ss_pred CccceEEEEECCCcccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEEEC
Confidence 4577777652 2568999988777666554 488999999998875433 332 478888899987766
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHH
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE 133 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (567)
+ ...+..+...+++.++..+...+.....+.+
T Consensus 266 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 266 P-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 4 5678889999999999999998876655544
No 48
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=77.42 E-value=7.8 Score=39.58 Aligned_cols=96 Identities=9% Similarity=0.155 Sum_probs=70.5
Q ss_pred CceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH--HHHHHHhhhhcCCeeeecccc
Q 008389 35 TRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA--IYEAHFGVPMAGAVLNAVNIR 103 (567)
Q Consensus 35 ~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~--~~~~~lA~~~~G~~~v~i~~~ 103 (567)
+.+|++.. +..+|.+.+...+......+...++.++|++...+|-.-. +...+++++ .|+..+..+ .
T Consensus 192 ~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~-~ 269 (548)
T 2d1s_A 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT-K 269 (548)
T ss_dssp TCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-C
T ss_pred CCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-C
Confidence 77887763 2568999887776665544333578899999888876433 334467777 999888765 5
Q ss_pred CChHHHHHHHhccCceEEEEcccchHHHH
Q 008389 104 LNAPTIAFLLGHSASAVIMVDQEYFKLAE 132 (567)
Q Consensus 104 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (567)
.+++.+...+++.++.+++..+.....+.
T Consensus 270 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 298 (548)
T 2d1s_A 270 FDEETFLKTLQDYKCTSVILVPTLFAILN 298 (548)
T ss_dssp CCHHHHHHHHHHTTEEEEEECHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcEEEecHHHHHHHH
Confidence 78899999999999999998877655443
No 49
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=77.25 E-value=4.9 Score=38.55 Aligned_cols=86 Identities=7% Similarity=-0.090 Sum_probs=62.9
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChH--HHHHHHHhhhhcCCeeeeccccCChH--------------
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP--AIYEAHFGVPMAGAVLNAVNIRLNAP-------------- 107 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i~~~~~~~-------------- 107 (567)
..+|.+.+...+..++..+...|+.++|++..++|-+. --+...++++..|+.+++. .+++.
T Consensus 109 v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~--~~dp~~~~~~~~~~~~~~~ 186 (369)
T 3hgu_A 109 VVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI--DIDPRWVKRSLSEGDTATV 186 (369)
T ss_dssp EEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC--CCCHHHHHHHHHTTCHHHH
T ss_pred EEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc--cCChHHHHHhhcccchhhh
Confidence 45899999888887777777789999999999887632 2234445558889855543 33444
Q ss_pred ---------HHHHHHhccCceEEEEcccchHHH
Q 008389 108 ---------TIAFLLGHSASAVIMVDQEYFKLA 131 (567)
Q Consensus 108 ---------~l~~~l~~~~~~~vi~~~~~~~~~ 131 (567)
.+...+++.++.++++.+.....+
T Consensus 187 ~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 187 RKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 666788999999999887765544
No 50
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=74.17 E-value=10 Score=36.12 Aligned_cols=102 Identities=13% Similarity=-0.036 Sum_probs=68.1
Q ss_pred CHHHHHhhhhhcCCCceeEEE---C------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHH-HHHHHHhh
Q 008389 21 TPLWFLDRAATVHPTRTSVVH---G------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPA-IYEAHFGV 90 (567)
Q Consensus 21 t~~~~l~~~a~~~p~~~a~~~---~------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~-~~~~~lA~ 90 (567)
...+++.++.. |.+|++. . +..+|++.+...+..++.. .++.++|++...+|-+-. .+..++..
T Consensus 26 ~~~~~~~~w~~---d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~pl~h~~gl~~~~~~ 99 (358)
T 4gs5_A 26 QAYDFMEKWLG---GAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKA---LSLGPGTRALVCLNVGYIAGLMMLVRG 99 (358)
T ss_dssp HHHHHHHHHHH---TCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred chhhHhhccCC---CCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHH---hCCCCCCEEEEECChHHHHHHHHHHHH
Confidence 34556666544 5566554 2 2569999988777665554 488999999988876532 24455666
Q ss_pred hhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHH
Q 008389 91 PMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131 (567)
Q Consensus 91 ~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 131 (567)
+..|+..+..++.... ...+++.++..+...+.....+
T Consensus 100 l~~g~~~~~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~l 137 (358)
T 4gs5_A 100 MELDWELTVTEPTANP---LAGLDHADFDFVAMVPMQLQSI 137 (358)
T ss_dssp HHHTCEEEEECCCSCT---TTTCSSCCCSEEEECHHHHHHH
T ss_pred HHhCcEEEecCccccH---HHHHHHhCCeEEEcChHHHHHh
Confidence 7778887777664432 4567888999998877655443
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=73.72 E-value=24 Score=35.58 Aligned_cols=96 Identities=9% Similarity=0.035 Sum_probs=70.7
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH--HHHHHhhhhcCCeeeecc
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI--YEAHFGVPMAGAVLNAVN 101 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i~ 101 (567)
.|+.+|++.. +..+|.+.+...+..++..+ ++.++|++...+|-.-.. ...+++++ .|+..+..
T Consensus 168 ~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~- 242 (517)
T 3r44_A 168 GGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI---DVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM- 242 (517)
T ss_dssp CTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS---CCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC-
T ss_pred CCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc---CCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe-
Confidence 3567777652 25689998887776665544 889999999988865433 33345555 88887766
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHHH
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE 133 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (567)
+...+..+...+++.++..+...+.....+..
T Consensus 243 ~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 274 (517)
T 3r44_A 243 PQFDATKVWSLIVEERVCIGGAVPAILNFMRQ 274 (517)
T ss_dssp SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHh
Confidence 56789999999999999999998877665554
No 52
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=71.80 E-value=21 Score=36.25 Aligned_cols=85 Identities=11% Similarity=0.010 Sum_probs=63.4
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
..+|++.+...+...... .+++++|++...++-+. --+...+.++..|+..+.+. .....++...++..++..++
T Consensus 49 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 127 (550)
T 3rix_A 49 VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSL-QFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVF 127 (550)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCT-TTHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEE
T ss_pred cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcc-cHHHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEE
Confidence 468999887776666554 48999999999888643 22344556666777777664 46788999999999999999
Q ss_pred eCcHHHHHHH
Q 008389 289 AAPVVLNSIV 298 (567)
Q Consensus 289 ~~p~~~~~l~ 298 (567)
........+.
T Consensus 128 ~~~~~~~~~~ 137 (550)
T 3rix_A 128 VSKKGLQKIL 137 (550)
T ss_dssp ECGGGHHHHH
T ss_pred EcHHHHHHHH
Confidence 9987766554
No 53
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=71.35 E-value=16 Score=37.55 Aligned_cols=98 Identities=3% Similarity=-0.065 Sum_probs=72.1
Q ss_pred cCCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH--HHHHHhhhhcCCeeeec
Q 008389 32 VHPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI--YEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 32 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~--~~~~lA~~~~G~~~v~i 100 (567)
..++.+|++.. +..+|++.+...+...+.. .++.++|++..++|-.-.+ ...+++++..|+..+..
T Consensus 164 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~~ 240 (590)
T 3kxw_A 164 IKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTS---FHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIMM 240 (590)
T ss_dssp CCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHh---hCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEEe
Confidence 35677887762 2568999988877666554 4889999999988876543 33478888999988877
Q ss_pred cccC---ChHHHHHHHhccCceEEEEcccchHHHH
Q 008389 101 NIRL---NAPTIAFLLGHSASAVIMVDQEYFKLAE 132 (567)
Q Consensus 101 ~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (567)
++.. .+..+...+++.++.++...+.....+.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~ 275 (590)
T 3kxw_A 241 SPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCV 275 (590)
T ss_dssp CHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHH
T ss_pred CHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHH
Confidence 6532 6778889999999999887666554443
No 54
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=70.56 E-value=26 Score=36.27 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=71.8
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCCh--HHHHH-HHHhhhhcCCeeeec
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNI--PAIYE-AHFGVPMAGAVLNAV 100 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~--~~~~~-~~lA~~~~G~~~v~i 100 (567)
.++.+|++.. +..+|.+.+...+......+ ++.++|++....|-+ ..+.. .+++++..|+..+..
T Consensus 182 ~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~---~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~~ 258 (617)
T 3rg2_A 182 PADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC---QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLA 258 (617)
T ss_dssp CTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc---CCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEEe
Confidence 3577777652 25689998887776655544 788999999998844 44433 478888889988766
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHH
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE 133 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (567)
+ ..++..+...+++.++.++...+.....+..
T Consensus 259 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 290 (617)
T 3rg2_A 259 A-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQ 290 (617)
T ss_dssp S-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHH
Confidence 4 4578888889999999999998877665544
No 55
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=68.75 E-value=11 Score=37.92 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=70.6
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH-HHHHHhhhhcCCeeeeccc
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI-YEAHFGVPMAGAVLNAVNI 102 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 102 (567)
.++.+|++.. +..+|++.+...+...... .++.++|++...+|-+... +..+++++..|+..+.++.
T Consensus 142 ~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 218 (512)
T 3fce_A 142 KGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVED---FNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAIDK 218 (512)
T ss_dssp CTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHH---TTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHh---cCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEECCH
Confidence 4567777652 2568998887766555443 4889999999988865332 4557888999999888765
Q ss_pred c--CChHHHHHHHhccCceEEEEcccchHH
Q 008389 103 R--LNAPTIAFLLGHSASAVIMVDQEYFKL 130 (567)
Q Consensus 103 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (567)
. ..+..+...+++.++.++...+.....
T Consensus 219 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 248 (512)
T 3fce_A 219 DMIARPKDLFASLEQSDIQVWTSTPSFAEM 248 (512)
T ss_dssp HHHHSHHHHHHHHHHHCCCEEEECHHHHHH
T ss_pred HHhhCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence 3 578889999999999999987776543
No 56
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=68.26 E-value=51 Score=33.38 Aligned_cols=102 Identities=7% Similarity=-0.006 Sum_probs=69.0
Q ss_pred cCceEEEEecCCC-CCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-
Q 008389 194 EWQSIALGYTSGT-TASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR- 268 (567)
Q Consensus 194 ~~~~~~i~~TSGt-TG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 268 (567)
++.++++....+. .+ ..-.+|++.+...+...... .+++++|++...++-+. --....+.++..|+..+.+.
T Consensus 33 p~~~A~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~ 109 (549)
T 3g7s_A 33 GEKTAIISAEPKFPSE--FPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSI-DYVMTIYALWRVAATPVPINP 109 (549)
T ss_dssp TTSEEEEEESSCCCCS--SCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEeCCCccccc--ccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHhCCEEEccCC
Confidence 3556665443211 12 12467888887776666554 47899999999888643 22344556666777777664
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcHHHHHHH
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPVVLNSIV 298 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~~~~~l~ 298 (567)
.....++...+++.++..++..+.....+.
T Consensus 110 ~~~~~~l~~il~~~~~~~~i~~~~~~~~~~ 139 (549)
T 3g7s_A 110 MYKSFELEHILNDSEATTLVVHSMLYENFK 139 (549)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred CCCHHHHHHHHHhcCCCEEEEChHHHHHHH
Confidence 467789999999999999999887665543
No 57
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=67.60 E-value=38 Score=34.18 Aligned_cols=84 Identities=12% Similarity=-0.006 Sum_probs=61.4
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
-.+|++.+...+...... .+++++|++...++-+. -.....+.++..|+..+.+. .....++...++..++..++
T Consensus 48 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i 126 (536)
T 3ni2_A 48 DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLI 126 (536)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEE
T ss_pred CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEE
Confidence 458999887776666554 48899999998888643 22344555666777766664 46788999999999999999
Q ss_pred eCcHHHHHH
Q 008389 289 AAPVVLNSI 297 (567)
Q Consensus 289 ~~p~~~~~l 297 (567)
+.+.....+
T Consensus 127 ~~~~~~~~~ 135 (536)
T 3ni2_A 127 TQACYYEKV 135 (536)
T ss_dssp ECGGGTHHH
T ss_pred EChHHHHHH
Confidence 987665544
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=67.23 E-value=44 Score=33.44 Aligned_cols=83 Identities=12% Similarity=0.015 Sum_probs=62.5
Q ss_pred eeeccHHHHHHHHHHHHHh---ccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALIW---GMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~~---~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
-.+|++.+...+......+ +++++|++...++-+. --....+.++..|+..+.+. .....++...+++.++..++
T Consensus 30 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi 108 (509)
T 3ivr_A 30 VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCS-EMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVV 108 (509)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEE
T ss_pred cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEE
Confidence 5689999887776666554 7899999999887643 22344555666777777664 46788999999999999999
Q ss_pred eCcHHHHH
Q 008389 289 AAPVVLNS 296 (567)
Q Consensus 289 ~~p~~~~~ 296 (567)
+.+.....
T Consensus 109 ~~~~~~~~ 116 (509)
T 3ivr_A 109 AGTDYRDI 116 (509)
T ss_dssp ECSTTHHH
T ss_pred ECcchhhh
Confidence 98887665
No 59
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=65.48 E-value=14 Score=37.11 Aligned_cols=95 Identities=11% Similarity=0.011 Sum_probs=70.3
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH-HHHHHhhhhcCCeeeeccc
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI-YEAHFGVPMAGAVLNAVNI 102 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~ 102 (567)
.++.+|++.. +..+|.+.+...+..++.. .++.++|++....|-+... +..+++++..|+..+.++.
T Consensus 141 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~~~ 217 (511)
T 3e7w_A 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICAD---FPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTK 217 (511)
T ss_dssp CTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHH---STTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEECCH
T ss_pred CCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHh---cCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEcCh
Confidence 4567777652 2568998887766655443 4788999999988865433 4457888999998887765
Q ss_pred c--CChHHHHHHHhccCceEEEEcccchHH
Q 008389 103 R--LNAPTIAFLLGHSASAVIMVDQEYFKL 130 (567)
Q Consensus 103 ~--~~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (567)
. ..+..+...+++.++.+++..+.....
T Consensus 218 ~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~ 247 (511)
T 3e7w_A 218 DAVNKPKVLFEELKKSGLNVWTSTPSFVQM 247 (511)
T ss_dssp HHHHSHHHHHHHHHHHCCSEEEECHHHHHH
T ss_pred hhhcCHHHHHHHHHHcCCcEEEecHHHHHH
Confidence 3 567888999999999999988776544
No 60
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=65.26 E-value=67 Score=32.40 Aligned_cols=85 Identities=7% Similarity=-0.066 Sum_probs=62.4
Q ss_pred eeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEe
Q 008389 212 GVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHF 287 (567)
Q Consensus 212 ~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l 287 (567)
...+|++.+...+...... .+++++|++...++-.. -.+...+.++..|+..+.+. .....++...+++.++..+
T Consensus 45 ~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~v 123 (541)
T 1v25_A 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHF-RHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVL 123 (541)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEE
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHhcCcEEEecCcccCHHHHHHHHHhCCCcEE
Confidence 4578999887776665544 47899999998888543 22334455666677766664 4678899999999999999
Q ss_pred eeCcHHHHHH
Q 008389 288 CAAPVVLNSI 297 (567)
Q Consensus 288 ~~~p~~~~~l 297 (567)
++.+.....+
T Consensus 124 i~~~~~~~~~ 133 (541)
T 1v25_A 124 LFDPNLLPLV 133 (541)
T ss_dssp EECGGGHHHH
T ss_pred EEChhHHHHH
Confidence 9988766544
No 61
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=64.14 E-value=43 Score=33.11 Aligned_cols=92 Identities=8% Similarity=-0.019 Sum_probs=67.1
Q ss_pred cCCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCC------CCEEEEEcCChH--HHHHHHHhhhhcC
Q 008389 32 VHPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGL------GCTVAIIAPNIP--AIYEAHFGVPMAG 94 (567)
Q Consensus 32 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~------gd~V~l~~~~~~--~~~~~~lA~~~~G 94 (567)
..++.+|++.. +..+|++.+...+..+...+ ++.+ +|++...+|-.- .++..+++++..|
T Consensus 180 ~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~---~~~~~~~~~~~d~~l~~~pl~h~~g~~~~~~~~l~~G 256 (480)
T 3t5a_A 180 DEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY---FADTDGIPPPNSALVSWLPFYHDMGLVIGICAPILGG 256 (480)
T ss_dssp SSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH---CTTTTTCCCTTEEEEECCCTTSTTHHHHHTHHHHHHT
T ss_pred CCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh---ccccccCCCCCCeEEEeCCCcCccHHHHHHHHHHHcC
Confidence 34677787763 36799999988777766655 4445 888888887654 3455678899999
Q ss_pred Ceeeecccc---CChHHHHHHHhccCceEEEEcccc
Q 008389 95 AVLNAVNIR---LNAPTIAFLLGHSASAVIMVDQEY 127 (567)
Q Consensus 95 ~~~v~i~~~---~~~~~l~~~l~~~~~~~vi~~~~~ 127 (567)
+..+..++. ..+..+...+++.++. +...+..
T Consensus 257 ~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~ 291 (480)
T 3t5a_A 257 YPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNF 291 (480)
T ss_dssp CCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHH
T ss_pred CceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHH
Confidence 998887654 4788899999999999 5554443
No 62
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=62.71 E-value=53 Score=30.81 Aligned_cols=91 Identities=8% Similarity=-0.079 Sum_probs=58.7
Q ss_pred CCceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHH
Q 008389 34 PTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIA 110 (567)
Q Consensus 34 p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~ 110 (567)
..++.+-.++ .+=|+++-- +..+...+.+.| +++|+.|.+....+=.-..+.++|...|..++.+-|...+..-.
T Consensus 34 g~~i~~K~E~~~ptGSfK~R~--a~~~i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~ 111 (334)
T 3tbh_A 34 KAKVVLKMECENPMASVKDRL--GFAIYDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERR 111 (334)
T ss_dssp SSEEEEEEGGGSTTSBTHHHH--HHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred CCEEEEEeCCCCCccCcHHHH--HHHHHHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHH
Confidence 3455555543 334555432 222223334445 48888864545556666777788888899888777766666667
Q ss_pred HHHhccCceEEEEccc
Q 008389 111 FLLGHSASAVIMVDQE 126 (567)
Q Consensus 111 ~~l~~~~~~~vi~~~~ 126 (567)
..++..++++++++..
T Consensus 112 ~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 112 CLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHHTTCEEEEECGG
T ss_pred HHHHHCCCEEEEECCC
Confidence 7889999999999764
No 63
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=59.38 E-value=87 Score=31.15 Aligned_cols=84 Identities=15% Similarity=0.051 Sum_probs=60.1
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
..+|++.+...+...... .+++++|++...++-.. -.....+.++..|+..+.+. .....++...+++.+++.++
T Consensus 28 ~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i 106 (504)
T 1t5h_X 28 LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAV 106 (504)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEE
T ss_pred ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCcEEEecCCccChHHHHHHHhhcCCcEEE
Confidence 568999887776666554 47899999999888653 22344556667777777664 46778899999999999998
Q ss_pred e--CcHHHHHH
Q 008389 289 A--APVVLNSI 297 (567)
Q Consensus 289 ~--~p~~~~~l 297 (567)
. .+.....+
T Consensus 107 ~~~~~~~~~~~ 117 (504)
T 1t5h_X 107 IAVGRQVADAI 117 (504)
T ss_dssp ECC--CHHHHH
T ss_pred Eecchhhhhhh
Confidence 8 66555444
No 64
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=59.38 E-value=34 Score=34.31 Aligned_cols=97 Identities=11% Similarity=0.015 Sum_probs=70.1
Q ss_pred cCCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChH--HHHHHHHhhhhcCCeeeec
Q 008389 32 VHPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIP--AIYEAHFGVPMAGAVLNAV 100 (567)
Q Consensus 32 ~~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~--~~~~~~lA~~~~G~~~v~i 100 (567)
..++.+|++.. +..+|.+.+...+..++..+ ++.++|++...+|-.- .++..+++.+..|+..+..
T Consensus 152 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~~ 228 (505)
T 3nyq_A 152 ADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHL 228 (505)
T ss_dssp CCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEEC
Confidence 34667777652 25689999988887766655 7889999888777532 2344578888999988766
Q ss_pred cccCChHHHHHHHhccCceEEEEcccchHHHHH
Q 008389 101 NIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEE 133 (567)
Q Consensus 101 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 133 (567)
+...++.+...+ +.++..++..+.....+..
T Consensus 229 -~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 229 -GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp -SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred -CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 456777777777 6789999988776655443
No 65
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=56.96 E-value=52 Score=33.06 Aligned_cols=84 Identities=6% Similarity=-0.126 Sum_probs=60.9
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
..+|+..+...+...... .+++++|++...++-+.. .....+.++..|+..+.+. ...+.++...+++.++..++
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 125 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVA-LPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVI 125 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTH-HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHH-HHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeEEE
Confidence 358999887776666554 478999999998886532 2334556666777776664 46788999999999999999
Q ss_pred eCcHHHHHH
Q 008389 289 AAPVVLNSI 297 (567)
Q Consensus 289 ~~p~~~~~l 297 (567)
..+.....+
T Consensus 126 ~~~~~~~~~ 134 (529)
T 2v7b_A 126 ASGALVQNV 134 (529)
T ss_dssp EEGGGHHHH
T ss_pred echhhhhHH
Confidence 887765443
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=56.70 E-value=98 Score=31.41 Aligned_cols=84 Identities=7% Similarity=0.017 Sum_probs=61.2
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
-.+|++.+...+...... .+++++|++...++-.. -.....+.++..|+..+.+. .....++...+++.++..++
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li 141 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSI-DLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLL 141 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEE
T ss_pred ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEE
Confidence 368999887766665544 48899999998888643 22334455666677766664 46778999999999999999
Q ss_pred eCcHHHHHH
Q 008389 289 AAPVVLNSI 297 (567)
Q Consensus 289 ~~p~~~~~l 297 (567)
..+.....+
T Consensus 142 ~~~~~~~~~ 150 (563)
T 1amu_A 142 TQKHLVHLI 150 (563)
T ss_dssp ECGGGHHHH
T ss_pred EcCchhhhh
Confidence 988765544
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.37 E-value=81 Score=32.16 Aligned_cols=95 Identities=13% Similarity=0.134 Sum_probs=65.6
Q ss_pred CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-
Q 008389 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR- 268 (567)
Q Consensus 193 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 268 (567)
.++.++++.... .| ....+|++.+...+...... .+++++|++...++-.. --+...+.++..|+..+.+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeCCc
Confidence 345677665432 12 24678999887776666554 48999999999988643 22334555566677666664
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcH
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPV 292 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~ 292 (567)
.....++...+++.++..+++.+.
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCHHHHHHHHHhcCCCEEEEecc
Confidence 467889999999999999987654
No 68
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=54.23 E-value=1.1e+02 Score=31.84 Aligned_cols=95 Identities=15% Similarity=0.043 Sum_probs=65.5
Q ss_pred cCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-c
Q 008389 194 EWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-Q 269 (567)
Q Consensus 194 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~ 269 (567)
++.++++.. +..+| ..-.+|++.+...+...... .+++++|++...+|...- .....+.+...|+..+.+. .
T Consensus 90 pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e-~vva~lA~~~~Gav~vpl~~~ 165 (652)
T 1pg4_A 90 GDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE-AAVAMLACARIGAVHSVIFGG 165 (652)
T ss_dssp TTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHH-HHHHHHHHHHHTCEEEECCTT
T ss_pred CCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHH-HHHHHHHHHHcCcEEEecCCC
Confidence 345666543 22122 24578999887776665544 489999999999987532 2344556666777777664 5
Q ss_pred CCHHHHHHHHHhhCceEeeeCcH
Q 008389 270 VTAKAVYSAIAKYGVTHFCAAPV 292 (567)
Q Consensus 270 ~~~~~~~~~i~~~~~t~l~~~p~ 292 (567)
+.+.++...+++.++.++++...
T Consensus 166 ~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 166 FSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp SCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCHHHHHHHHHhcCCCEEEEcCc
Confidence 78899999999999999887653
No 69
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=50.99 E-value=47 Score=34.33 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=69.3
Q ss_pred CCCceeEEEC---------CccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHH-HHHHHhhhhcCCeeeecc-
Q 008389 33 HPTRTSVVHG---------STRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAI-YEAHFGVPMAGAVLNAVN- 101 (567)
Q Consensus 33 ~p~~~a~~~~---------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~- 101 (567)
.|+.+|++.. +..+|.+.+...+.. ....++.++|++....|-+.+. +..+++.+..|+..+..+
T Consensus 162 ~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~~~ 237 (620)
T 4dg8_A 162 AADQIAYINFSSGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLNDL 237 (620)
T ss_dssp CTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCS
T ss_pred CCCCeEEEEECCCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeCcc
Confidence 4677777652 256888877544322 2235888999999988876443 445688888998877763
Q ss_pred ccCChHHHHHHHhccCceEEEEcccchHHHH
Q 008389 102 IRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132 (567)
Q Consensus 102 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (567)
...+++.+...+++.++..+...+.....+.
T Consensus 238 ~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~ 268 (620)
T 4dg8_A 238 GPLDPGVLRQLIGERGADSAWLTASLFNTLV 268 (620)
T ss_dssp SSCCHHHHHHHHHTTCCCEEEEEHHHHHHHH
T ss_pred ccCCHHHHHHHHHHhCCcEEEccHHHHHHHH
Confidence 3567889999999999999998877665554
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=50.83 E-value=67 Score=32.04 Aligned_cols=79 Identities=13% Similarity=-0.016 Sum_probs=58.9
Q ss_pred eeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeee
Q 008389 214 VLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCA 289 (567)
Q Consensus 214 ~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 289 (567)
.+|++.+...+...... .+++++|++...++-+. -.....+.++..|+..+.+. .....++...+++.++..+++
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV-EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCH-HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 58999887776666554 47899999998888653 22344556666777777664 467789999999999999998
Q ss_pred CcHH
Q 008389 290 APVV 293 (567)
Q Consensus 290 ~p~~ 293 (567)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 8754
No 71
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=50.56 E-value=62 Score=35.62 Aligned_cols=95 Identities=12% Similarity=0.017 Sum_probs=67.1
Q ss_pred CcCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-
Q 008389 193 DEWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR- 268 (567)
Q Consensus 193 ~~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~- 268 (567)
.++.++++... +| -.+|++.+...+..+... .+++++|++...++-.. --+...+.++..|+..+.+.
T Consensus 74 ~pd~~Al~~~~---~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~-e~~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLINGP---TG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCP-EFVLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEETT---TC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCH-HHHHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEECC---CC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 35566665422 22 468999887766665554 48899999999988653 23344556667777777764
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcHHHH
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPVVLN 295 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~~~~ 295 (567)
...+.++...+++.++.++++.+.+..
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 172 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYVD 172 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHHH
Confidence 467889999999999999998876543
No 72
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=50.05 E-value=83 Score=32.00 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=61.8
Q ss_pred eeeeccHHHHHHHHHHHHH---h-ccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceE
Q 008389 212 GVVLSHRGAYLMSLSVALI---W-GMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTH 286 (567)
Q Consensus 212 ~v~~t~~~l~~~~~~~~~~---~-~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~ 286 (567)
...+|++.+...+...... . +++++|++...++-.. --+...+.++..|+..+.+. .....++...++..++..
T Consensus 71 ~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~-e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~ 149 (570)
T 3c5e_A 71 ELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP-EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKA 149 (570)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred eeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeE
Confidence 3578999887776665544 3 7889999998888643 22334556666777766664 467788999999999999
Q ss_pred eeeCcHHHHHH
Q 008389 287 FCAAPVVLNSI 297 (567)
Q Consensus 287 l~~~p~~~~~l 297 (567)
+++.+.....+
T Consensus 150 vi~~~~~~~~~ 160 (570)
T 3c5e_A 150 IVAGDEVIQEV 160 (570)
T ss_dssp EEEETTTHHHH
T ss_pred EEechHHHHHH
Confidence 99887766554
No 73
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=49.28 E-value=58 Score=30.65 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=64.3
Q ss_pred hcCCCceeEEECC--ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHH
Q 008389 31 TVHPTRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPT 108 (567)
Q Consensus 31 ~~~p~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~ 108 (567)
+...-++.+-.++ .+=||++= -....+.....+..+.+|.+..+....+-.-..+.++|.++|..++.+-|...+..
T Consensus 46 ~~~G~~IylK~E~lnptGSfK~R-gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~ 124 (344)
T 3vc3_A 46 EGCGAYVAVKQEMMQPTASIADR-PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLE 124 (344)
T ss_dssp TTCCSEEEEEEGGGSTTSBTTHH-HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHH
T ss_pred hhhCCEEEEEecCCCCCCCcHHH-HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHH
Confidence 3334456665543 44555532 22233333333334678876666777777778888999999999888888777777
Q ss_pred HHHHHhccCceEEEEccc
Q 008389 109 IAFLLGHSASAVIMVDQE 126 (567)
Q Consensus 109 l~~~l~~~~~~~vi~~~~ 126 (567)
-...++..++++++++..
T Consensus 125 k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 125 RRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHcCCEEEEECCC
Confidence 788999999999999764
No 74
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=47.67 E-value=97 Score=29.07 Aligned_cols=89 Identities=9% Similarity=-0.053 Sum_probs=54.0
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-||++.-.. ..+. .+.+.| +++|+.|..... +=.-..+.++|...|..++.+-|...+..-..
T Consensus 42 ~~v~~K~E~~~ptGSfKdR~a~-~~l~-~a~~~g~~~~g~~vv~aSs-GN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 118 (343)
T 2pqm_A 42 TRILVKLEYFNPMSSVKDRVGF-NIVY-QAIKDGRLKPGMEIIESTS-GNTGIALCQAGAVFGYRVNIAMPSTMSVERQM 118 (343)
T ss_dssp CEEEEEEGGGSTTSBTHHHHHH-HHHH-HHHHHTSSCTTCEEEEECS-SHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred cEEEEEeccCCCCCChHHHHHH-HHHH-HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 345554433 44555544221 1222 233444 467776655543 44445566777789988877766655566667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++..
T Consensus 119 ~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 119 IMKAFGAELILTEGK 133 (343)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEECCC
Confidence 889999999999864
No 75
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=47.67 E-value=1.2e+02 Score=30.74 Aligned_cols=80 Identities=11% Similarity=0.004 Sum_probs=58.8
Q ss_pred eeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEeee
Q 008389 214 VLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFCA 289 (567)
Q Consensus 214 ~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~~ 289 (567)
.+|++.+...+...... .+++++|++...++-.. --....+.++..|+..+.+. .....++...+++.++..+++
T Consensus 100 ~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~ 178 (570)
T 4gr5_A 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGF-DMVVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVT 178 (570)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEE
T ss_pred cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEe
Confidence 58999887776666554 47899999998887643 22344555666677776664 467889999999999999998
Q ss_pred CcHHH
Q 008389 290 APVVL 294 (567)
Q Consensus 290 ~p~~~ 294 (567)
.....
T Consensus 179 ~~~~~ 183 (570)
T 4gr5_A 179 SRPLS 183 (570)
T ss_dssp CTTTT
T ss_pred cchhh
Confidence 76543
No 76
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=47.27 E-value=87 Score=23.42 Aligned_cols=63 Identities=10% Similarity=-0.042 Sum_probs=38.5
Q ss_pred hHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCC
Q 008389 465 SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPA 527 (567)
Q Consensus 465 ~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 527 (567)
...|.+.+.++|+|.++-=+-.......-.+.+-|+..++..-.+..++..++.+.+++.++.
T Consensus 12 ~~~I~~~l~~~~gV~~vh~lr~r~~G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 12 YDDIFAVLERFPNVHNPHRVRIRRVGTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHTTCSSCEEEEEEEEECSCC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCCccccEEEEEEEECCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 456888888999998875444433211223445566655542234445677888888887763
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=47.25 E-value=87 Score=27.07 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=52.0
Q ss_pred cEEEEecCc--cchhhhHHHHHHhhhcCeeE-Eec-cCCHHHHHHHHHhhCceEeee--CcHH------HHHHHcCCCCC
Q 008389 237 AVYLWTLPM--FHCNGWCYTWSLAALCGTSI-CLR-QVTAKAVYSAIAKYGVTHFCA--APVV------LNSIVNAPSED 304 (567)
Q Consensus 237 d~~~~~~p~--~~~~g~~~~~~~~~~g~~~~-~~~-~~~~~~~~~~i~~~~~t~l~~--~p~~------~~~l~~~~~~~ 304 (567)
.+++...+. .|..|....-..+...|--+ .+. ...++.+.+.+.+++++++.. +-.. +..+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 344444433 57777766555555555544 443 467899999999999997776 3211 22222222211
Q ss_pred CcCCCC-chhhhhccCCCCCHHHHHH
Q 008389 305 TILPLP-HVVHVNTAGAAPPPSVLHA 329 (567)
Q Consensus 305 ~~~~l~-~lr~i~~~G~~l~~~~~~~ 329 (567)
. ++ .+ .+++||.+++++..+.
T Consensus 173 ~---~~~~v-~v~vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 173 K---LRDSV-KCMFGGAPVSDKWIEE 194 (215)
T ss_dssp T---CGGGS-EEEEESSSCCHHHHHH
T ss_pred C---CCCCC-EEEEECCCCCHHHHHH
Confidence 1 11 22 3788999999775544
No 78
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=44.50 E-value=1.1e+02 Score=31.89 Aligned_cols=95 Identities=8% Similarity=0.051 Sum_probs=65.4
Q ss_pred cCceEEEEecCCCCCCCCeeeeccHHHHHHHHHHHH----HhccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEe-c
Q 008389 194 EWQSIALGYTSGTTASPKGVVLSHRGAYLMSLSVAL----IWGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICL-R 268 (567)
Q Consensus 194 ~~~~~~i~~TSGtTG~pK~v~~t~~~l~~~~~~~~~----~~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~-~ 268 (567)
++.++++... ..+| ....+|++.+...+..... ..+++++|++...+|... -.....+.+...|+..+.+ +
T Consensus 96 pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~-e~v~a~lA~~~~Gav~vpl~~ 171 (663)
T 1ry2_A 96 PNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP-EAIITLLAISRIGAIHSVVFA 171 (663)
T ss_dssp TTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSH-HHHHHHHHHHHTTCEEEECCT
T ss_pred CCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCH-HHHHHHHHHHHcCCEEEeeCC
Confidence 4556665432 2122 2356899988776655543 457889999999998753 2234455666677777766 4
Q ss_pred cCCHHHHHHHHHhhCceEeeeCcH
Q 008389 269 QVTAKAVYSAIAKYGVTHFCAAPV 292 (567)
Q Consensus 269 ~~~~~~~~~~i~~~~~t~l~~~p~ 292 (567)
.+....+...+++.++.++++...
T Consensus 172 ~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 172 GFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCHHHHHHHHHhcCCeEEEEccc
Confidence 578899999999999999998654
No 79
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=44.18 E-value=1.3e+02 Score=28.08 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=53.7
Q ss_pred ccccHHHHHHHHHHHHH---HHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceE
Q 008389 44 TRYTWLQTYQRCRRLAS---ALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~---~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 120 (567)
..+++.+.......... .|...++++|++|+|+..-+.-.+++.+|....|+.++.++. +.++ ..+.+..++..
T Consensus 135 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~ 211 (348)
T 4eez_A 135 DGLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADV 211 (348)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSE
T ss_pred CCCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeE
Confidence 45777776554443332 344568999999999988888888888887777877666643 3343 35667778887
Q ss_pred EEEcc
Q 008389 121 IMVDQ 125 (567)
Q Consensus 121 vi~~~ 125 (567)
++...
T Consensus 212 ~i~~~ 216 (348)
T 4eez_A 212 TINSG 216 (348)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 77544
No 80
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=41.43 E-value=1.3e+02 Score=30.44 Aligned_cols=85 Identities=7% Similarity=-0.127 Sum_probs=61.5
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEecc-CC-------HHHHHHHHHh
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLRQ-VT-------AKAVYSAIAK 281 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~~-~~-------~~~~~~~i~~ 281 (567)
-.+|++.+...+...... .+++++|++...++-+. --....+.++..|+..+.+.. .. ..++...++.
T Consensus 48 ~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~ 126 (576)
T 3gqw_A 48 DQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLAS 126 (576)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHH
T ss_pred eEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHh
Confidence 578999988776666554 47899999999988643 223445566667777776643 33 5788889999
Q ss_pred hCceEeeeCcHHHHHHH
Q 008389 282 YGVTHFCAAPVVLNSIV 298 (567)
Q Consensus 282 ~~~t~l~~~p~~~~~l~ 298 (567)
.++..++........+.
T Consensus 127 ~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 127 CQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HCCSEEEECGGGHHHHH
T ss_pred cCCCEEEecHHHHHHHH
Confidence 99999999887665543
No 81
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=40.50 E-value=2e+02 Score=26.30 Aligned_cols=89 Identities=7% Similarity=-0.112 Sum_probs=54.2
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-++++--. ..+...+.+.| +++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 31 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~ 107 (313)
T 2q3b_A 31 ADIVAKLEFFNPANSVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRM 107 (313)
T ss_dssp SEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred cEEEEEehhcCCCCcHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 344443432 3455665332 22223334444 367776655 44455555566777799998887766555555667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++..
T Consensus 108 ~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 108 LLRAYGAELILTPGA 122 (313)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHCCCEEEEeCCC
Confidence 888999999999864
No 82
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=39.87 E-value=2.2e+02 Score=25.98 Aligned_cols=89 Identities=9% Similarity=-0.084 Sum_probs=54.5
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-+|++--. ..+...+.+.| +++|+.|.. ...+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 29 ~~i~~K~E~~~ptgSfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 105 (308)
T 2egu_A 29 ADVYLKLEFMNPGSSVKDRIA--LAMIEAAEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRN 105 (308)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHH
T ss_pred CEEEEEecccCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHH
Confidence 445554433 3445554322 22222333444 366766655 55555556667778889998877766555555667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++..
T Consensus 106 ~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 106 LLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEECCC
Confidence 789999999999864
No 83
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=39.63 E-value=84 Score=29.32 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=13.1
Q ss_pred cCCCCCEEEEEcCCh
Q 008389 66 SIGLGCTVAIIAPNI 80 (567)
Q Consensus 66 g~~~gd~V~l~~~~~ 80 (567)
-+++||+|+|++|.+
T Consensus 8 ~L~~GD~I~ivaPSs 22 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSR 22 (327)
T ss_dssp CCCTTCEEEEECSSS
T ss_pred CCCCCCEEEEEeCCC
Confidence 578999999999875
No 84
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=38.32 E-value=1.1e+02 Score=30.59 Aligned_cols=79 Identities=10% Similarity=-0.132 Sum_probs=57.2
Q ss_pred eeeccHHHHHHHHHHHHH---hccCCCcEEEEecCccchhhhHHHHHHhhhcCeeEEec-cCCHHHHHHHHHhhCceEee
Q 008389 213 VVLSHRGAYLMSLSVALI---WGMNEGAVYLWTLPMFHCNGWCYTWSLAALCGTSICLR-QVTAKAVYSAIAKYGVTHFC 288 (567)
Q Consensus 213 v~~t~~~l~~~~~~~~~~---~~~~~~d~~~~~~p~~~~~g~~~~~~~~~~g~~~~~~~-~~~~~~~~~~i~~~~~t~l~ 288 (567)
-.+|++.+...+...... .++.++|++...++-.. --+...+.++..|+..+.+. .....++...++..++..++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 347899887776666554 47899999888887543 22344555666777777664 46788999999999999998
Q ss_pred eCcH
Q 008389 289 AAPV 292 (567)
Q Consensus 289 ~~p~ 292 (567)
....
T Consensus 107 ~~~~ 110 (521)
T 3l8c_A 107 AIEE 110 (521)
T ss_dssp ESSC
T ss_pred ecCc
Confidence 7654
No 85
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.16 E-value=2.4e+02 Score=25.98 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=54.1
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-||++--.. ..+.. +.+.| +++|....+....+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 30 ~~v~~K~E~~~ptGSfK~R~a~-~~l~~-a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~ 107 (322)
T 1z7w_A 30 GRVAAKLEMMEPCSSVKDRIGF-SMISD-AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRI 107 (322)
T ss_dssp SEEEEEEGGGSTTSBTHHHHHH-HHHHH-HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred ceEEEEecccCCCCchHHHHHH-HHHHH-HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 455554433 33445543221 22222 33445 456643333345555666667778899998887766655566667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++.+
T Consensus 108 ~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 108 ILLAFGVELVLTDPA 122 (322)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 889999999999864
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=37.31 E-value=96 Score=29.05 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=13.5
Q ss_pred cCCCCCEEEEEcCCh
Q 008389 66 SIGLGCTVAIIAPNI 80 (567)
Q Consensus 66 g~~~gd~V~l~~~~~ 80 (567)
-+++||+|+|++|.+
T Consensus 9 ~L~~GD~I~ivaPSs 23 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSS 23 (336)
T ss_dssp CCCTTCEEEEECSSS
T ss_pred CCCCCCEEEEEeCCC
Confidence 578999999999987
No 87
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=36.90 E-value=2.2e+02 Score=27.61 Aligned_cols=63 Identities=14% Similarity=0.037 Sum_probs=46.9
Q ss_pred HHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcc
Q 008389 63 CKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 63 ~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
.+.| +.+|....+....+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 3455 46775544555556667777788999999888777766666677889999999999975
No 88
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=36.89 E-value=2.4e+02 Score=25.61 Aligned_cols=63 Identities=11% Similarity=0.004 Sum_probs=43.4
Q ss_pred HHcc-CCCCC--EEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEccc
Q 008389 63 CKRS-IGLGC--TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126 (567)
Q Consensus 63 ~~~g-~~~gd--~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (567)
.+.| +++|+ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3444 56666 4444 44455555566777899998877766555566667889999999999875
No 89
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=36.14 E-value=1e+02 Score=29.35 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=33.4
Q ss_pred cCCCCCEEEEEcCChHH------HHHHHHhhh-hcCCeeeeccccC------------ChHHHHHHHhccCceEEEEcc
Q 008389 66 SIGLGCTVAIIAPNIPA------IYEAHFGVP-MAGAVLNAVNIRL------------NAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 66 g~~~gd~V~l~~~~~~~------~~~~~lA~~-~~G~~~v~i~~~~------------~~~~l~~~l~~~~~~~vi~~~ 125 (567)
-+++||+|+|++|.+.- .+-.....+ ..|..++.-+... .++++...+.+-++++|+|..
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~r 117 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTI 117 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcc
Confidence 68999999999998632 222222223 3577665433211 133444455555666666643
No 90
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=35.04 E-value=2.5e+02 Score=26.22 Aligned_cols=55 Identities=11% Similarity=0.124 Sum_probs=36.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-------CChHHHHHHHhccCceEEEEc
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-------LNAPTIAFLLGHSASAVIMVD 124 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~~ 124 (567)
+++||.|.+..+....+. .++...|+.++.++.. ...+.+...++..++++|+..
T Consensus 106 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~ 167 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNMFY---SVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFC 167 (391)
T ss_dssp SCTTCEEEECSSCCHHHH---HHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEE
T ss_pred CCCCCeEEECCCCcHHHH---HHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEE
Confidence 467888877666544432 3445667777766543 678889998886678877643
No 91
>3byp_A CZRB protein; membrane protein, zinc transporter, transport protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1 PDB: 3byr_A
Probab=34.13 E-value=98 Score=22.24 Aligned_cols=64 Identities=6% Similarity=0.074 Sum_probs=37.7
Q ss_pred chHHHHHHHhcC--CCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCC
Q 008389 464 SSVEVENMMYLH--PAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPA 527 (567)
Q Consensus 464 ~~~~iE~~l~~~--~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 527 (567)
...+|.+.+.++ |+|.++-=+-...-...-.+.+-++..++..-.+..++..++.+.++++++.
T Consensus 11 ~~~~I~~~l~~~~~~gV~~vh~l~~~~~g~~~~v~~hi~v~~~~~~~~~h~i~~~ie~~l~~~~~~ 76 (94)
T 3byp_A 11 EVERIRAFLQERIRGRALEVHDLKTRRAGPRSFLEFHLVVRGDTPVEEAHRLCDELERALAQAFPG 76 (94)
T ss_dssp HHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCCCCceeeeeEEEEEECCcEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 356778888888 9988765433322111123345566655542234455667888888887763
No 92
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=32.20 E-value=71 Score=32.38 Aligned_cols=86 Identities=6% Similarity=-0.113 Sum_probs=63.0
Q ss_pred ccccHHHHHHHHHHHHHHHHH-----ccCCCCCEEEEEcCChHHH-HHHHHhhhhcCCeeeeccccCChHHHHHHHhccC
Q 008389 44 TRYTWLQTYQRCRRLASALCK-----RSIGLGCTVAIIAPNIPAI-YEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSA 117 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~-----~g~~~gd~V~l~~~~~~~~-~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~ 117 (567)
..+|++.+...+..++..+.. ..+...+++....+...+. +..++.++..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 568999998888887776642 4577888888777765443 3446778888988776655444567788999999
Q ss_pred ceEEEEcccchH
Q 008389 118 SAVIMVDQEYFK 129 (567)
Q Consensus 118 ~~~vi~~~~~~~ 129 (567)
+.++...+....
T Consensus 273 ~t~~~~~P~~l~ 284 (562)
T 3ite_A 273 VTHAGIVPSLLD 284 (562)
T ss_dssp CCEEEECHHHHH
T ss_pred CCEEEcCHHHHh
Confidence 999998776433
No 93
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=31.97 E-value=1.1e+02 Score=28.51 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=13.5
Q ss_pred cCCCCCEEEEEcCChH
Q 008389 66 SIGLGCTVAIIAPNIP 81 (567)
Q Consensus 66 g~~~gd~V~l~~~~~~ 81 (567)
-+++||+|+|++|.+.
T Consensus 8 ~L~~GD~I~ivaPS~~ 23 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCS 23 (331)
T ss_dssp CCCTTCEEEEECSSSC
T ss_pred CCCCcCEEEEEeCCCC
Confidence 4789999999998864
No 94
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=31.81 E-value=1.2e+02 Score=28.51 Aligned_cols=59 Identities=5% Similarity=-0.039 Sum_probs=42.2
Q ss_pred CCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchH
Q 008389 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFK 129 (567)
Q Consensus 70 gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 129 (567)
.+.|... ..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++....+
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~ 134 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDES 134 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHH
Confidence 3444433 3455556666788899988887777666666678899999999999876543
No 95
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=29.87 E-value=3.2e+02 Score=24.82 Aligned_cols=89 Identities=9% Similarity=-0.039 Sum_probs=53.9
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-||++--. ..+...+.+.| +++|+.|.... .+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 25 ~~v~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 101 (303)
T 2v03_A 25 SEVWLKLEGNNPAGSVKDRAA--LSMIVEAEKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRA 101 (303)
T ss_dssp CEEEEEEGGGSTTSBTHHHHH--HHHHHHHHHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCCcHHHHH--HHHHHHHHHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 345544433 3445554322 22222233444 46777666654 344455566777799998887777655566667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++.+
T Consensus 102 ~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 102 AMRAYGAELILVTKE 116 (303)
T ss_dssp HHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEECCC
Confidence 889999999999863
No 96
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=29.79 E-value=1e+02 Score=29.31 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=34.6
Q ss_pred HHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-----CChHHHHHHHhccC--ceEEEE
Q 008389 62 LCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-----LNAPTIAFLLGHSA--SAVIMV 123 (567)
Q Consensus 62 L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~--~~~vi~ 123 (567)
|...++++||.|.+-.+...... -++...|+.++.++.+ .+.+.+...+..-+ .++|+.
T Consensus 70 l~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 70 IQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 44446788888877665544332 3445667776665532 35677777663333 666664
No 97
>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*
Probab=29.61 E-value=1.7e+02 Score=27.63 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=42.2
Q ss_pred EEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHH
Q 008389 75 IIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLA 131 (567)
Q Consensus 75 l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 131 (567)
+....+=.-..+.++|.+.|..++.+-|...+......++..++++++++..+.+..
T Consensus 97 v~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~ 153 (364)
T 4h27_A 97 VCSSSGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAF 153 (364)
T ss_dssp EECCSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTHHH
T ss_pred EEeCCChHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHH
Confidence 334445555666777889999888777776667778889999999999987654433
No 98
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=29.22 E-value=1.2e+02 Score=21.20 Aligned_cols=46 Identities=9% Similarity=-0.088 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCe
Q 008389 44 TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAV 96 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~ 96 (567)
..+.+.++.+ .+.+.+..+++.|.++|..+.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4455666543 344456678888999998887777777777777764
No 99
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=28.40 E-value=1.9e+02 Score=29.01 Aligned_cols=61 Identities=10% Similarity=-0.021 Sum_probs=45.4
Q ss_pred Hcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcc
Q 008389 64 KRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 64 ~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
+.| +++|+.|.. ...+=.-..+.++|...|..++.+-|...+..-...++..++.++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578887755 4445555666678888899888777766666667888999999999875
No 100
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=28.19 E-value=1.1e+02 Score=21.45 Aligned_cols=47 Identities=26% Similarity=0.220 Sum_probs=30.7
Q ss_pred hHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCC
Q 008389 465 SVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMP 526 (567)
Q Consensus 465 ~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~ 526 (567)
..++++.+.++|.|.+|..+..... ..+.+... +. +++.+.+.+.+.
T Consensus 15 ~~~~~~~l~~~peV~e~~~vtG~~D-----~ll~v~~~------d~----~~l~~~i~~~l~ 61 (83)
T 2cvi_A 15 EREVMEKLLAMPEVKEAYVVYGEYD-----LIVKVETD------TL----KDLDQFITEKIR 61 (83)
T ss_dssp HHHHHHHHHTSTTEEEEEECBSSCS-----EEEEEEES------SH----HHHHHHHHTTGG
T ss_pred HHHHHHHHhCCCCeeEEEEEcccCC-----EEEEEEEC------CH----HHHHHHHHHHhc
Confidence 4789999999999999987654433 45555432 22 456666665544
No 101
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=27.70 E-value=2e+02 Score=27.91 Aligned_cols=56 Identities=14% Similarity=-0.024 Sum_probs=29.2
Q ss_pred EEEcCChHHHHH-HHHhhhhcCCeeeeccccCChH--HHHHHHhccCceEEEEcccchH
Q 008389 74 AIIAPNIPAIYE-AHFGVPMAGAVLNAVNIRLNAP--TIAFLLGHSASAVIMVDQEYFK 129 (567)
Q Consensus 74 ~l~~~~~~~~~~-~~lA~~~~G~~~v~i~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~ 129 (567)
+++..++.+.+. ++.++++-|-.++..++.+... .+...+...+++++.++....+
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~ 158 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSL 158 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHH
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHH
Confidence 455556655543 3345555665555444544321 1222556677777777655333
No 102
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=27.30 E-value=2.7e+02 Score=25.81 Aligned_cols=78 Identities=12% Similarity=0.054 Sum_probs=51.4
Q ss_pred ccHHHHHHHHHHH---HHHHHHc--cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceE
Q 008389 46 YTWLQTYQRCRRL---ASALCKR--SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120 (567)
Q Consensus 46 ~Ty~el~~~~~~l---A~~L~~~--g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 120 (567)
+++.+........ -..|.+. ++++|++|+|...-+.-.+++.+|-..-|+.++.++. +.+++ .++++.+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 7777765443322 2234443 7899999999988777888888887665666665543 34443 4567788888
Q ss_pred EEEccc
Q 008389 121 IMVDQE 126 (567)
Q Consensus 121 vi~~~~ 126 (567)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876544
No 103
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=27.24 E-value=2.5e+02 Score=23.80 Aligned_cols=96 Identities=1% Similarity=-0.062 Sum_probs=51.0
Q ss_pred ccccHHHHHHHHHHHHHHHHH-------ccCCCCCEEEEEcCC----hHHHHHHHHhhhhcCCeeeeccccCChHHHHHH
Q 008389 44 TRYTWLQTYQRCRRLASALCK-------RSIGLGCTVAIIAPN----IPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFL 112 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~~-------~g~~~gd~V~l~~~~----~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~ 112 (567)
..++..|+...+..+-..+.. ..-..+-+|.+.+.. .+...++...+-..|..++.+....+.+++...
T Consensus 55 g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~ 134 (210)
T 1y80_A 55 NEMFVPEVLMSANAMNAGVEVVKQSQQAFDMPSVGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEA 134 (210)
T ss_dssp ------------------------------CCCCCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 456666665544444433332 111223366666543 355555566666789999999999999999999
Q ss_pred HhccCceEEEEccc---chHHHHHHHHHHh
Q 008389 113 LGHSASAVIMVDQE---YFKLAEEALKIME 139 (567)
Q Consensus 113 l~~~~~~~vi~~~~---~~~~~~~~~~~~~ 139 (567)
++..++++|..+.. ..+.+.+..+.+.
T Consensus 135 ~~~~~~d~v~lS~~~~~~~~~~~~~i~~l~ 164 (210)
T 1y80_A 135 VKKYQPDIVGMSALLTTTMMNMKSTIDALI 164 (210)
T ss_dssp HHHHCCSEEEEECCSGGGTHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeccccccHHHHHHHHHHHH
Confidence 99999999997653 3345555555554
No 104
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=26.63 E-value=2.7e+02 Score=25.89 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=34.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc------CChHHHHHHHhccCceEEEEc
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR------LNAPTIAFLLGHSASAVIMVD 124 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~------~~~~~l~~~l~~~~~~~vi~~ 124 (567)
+++||.|.+..|.-..+.- ++...|+.+++++.. ...+.+...++. ++++|+..
T Consensus 102 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~ 161 (375)
T 3op7_A 102 IEPGDHVISLYPTYQQLYD---IPKSLGAEVDLWQIEEENGWLPDLEKLRQLIRP-TTKMICIN 161 (375)
T ss_dssp CCTTCEEEEEESSCTHHHH---HHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCT-TCCEEEEE
T ss_pred cCCCCEEEEeCCCchhHHH---HHHHcCCEEEEEeccccCCCCCCHHHHHHhhcc-CCeEEEEc
Confidence 5789998887776554432 344567766555433 367788887764 56666654
No 105
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A
Probab=26.54 E-value=2.6e+02 Score=27.21 Aligned_cols=100 Identities=11% Similarity=-0.061 Sum_probs=62.4
Q ss_pred CceeEEECC--c-cccHHHH--HHHHHHHHHHH-HHccC-CCCC----------------EEEEEcCChHHHHHHHHhhh
Q 008389 35 TRTSVVHGS--T-RYTWLQT--YQRCRRLASAL-CKRSI-GLGC----------------TVAIIAPNIPAIYEAHFGVP 91 (567)
Q Consensus 35 ~~~a~~~~~--~-~~Ty~el--~~~~~~lA~~L-~~~g~-~~gd----------------~V~l~~~~~~~~~~~~lA~~ 91 (567)
.++.+-.++ . +=||++- ...+.+++..+ .+.|+ .+|+ +..+....+=.-..+.++|.
T Consensus 101 ~~v~lK~E~~~p~tGSfK~Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa 180 (442)
T 3ss7_X 101 GQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSA 180 (442)
T ss_dssp SEEEEEEGGGCTTTSBTHHHHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEeecCCCCCCCCcHHHHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHH
Confidence 455555543 2 4566654 33444444443 34454 5555 24444555556666777788
Q ss_pred hcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHHHH
Q 008389 92 MAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAEEA 134 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~ 134 (567)
+.|..++.+-|...+..-...++..++++++++..+.+.....
T Consensus 181 ~~G~~~~Ivmp~~~~~~k~~~~r~~GA~Vv~v~~~~~~a~~~a 223 (442)
T 3ss7_X 181 RIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEG 223 (442)
T ss_dssp HHTCEEEEEEETTSCHHHHHHHHHTTCEEEEESSCHHHHHHHH
T ss_pred HhCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
Confidence 8898877776665666667788999999999988765544443
No 106
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=26.41 E-value=2e+02 Score=27.01 Aligned_cols=80 Identities=14% Similarity=0.073 Sum_probs=51.1
Q ss_pred ccccHHHHH---HHHHH---HHHHHHH--ccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhc
Q 008389 44 TRYTWLQTY---QRCRR---LASALCK--RSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGH 115 (567)
Q Consensus 44 ~~~Ty~el~---~~~~~---lA~~L~~--~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~ 115 (567)
..+++.+.. -.... .-..|.+ .++++|++|+|+..-+.-.+++.+|-...|+.++.+.. +.+.+ .++++
T Consensus 153 ~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~-~~~~~ 229 (359)
T 1h2b_A 153 KDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKL-KLAER 229 (359)
T ss_dssp TTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHH-HHHHH
T ss_pred CCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHH-HHHHH
Confidence 457777754 12111 1233445 68999999999998777788888877544886555543 34444 34567
Q ss_pred cCceEEEEccc
Q 008389 116 SASAVIMVDQE 126 (567)
Q Consensus 116 ~~~~~vi~~~~ 126 (567)
.+++.++...+
T Consensus 230 lGa~~vi~~~~ 240 (359)
T 1h2b_A 230 LGADHVVDARR 240 (359)
T ss_dssp TTCSEEEETTS
T ss_pred hCCCEEEeccc
Confidence 88888775443
No 107
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=25.77 E-value=1.5e+02 Score=27.15 Aligned_cols=74 Identities=14% Similarity=0.020 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHHHHHHHHH---HccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceE
Q 008389 44 TRYTWLQTYQRCRRLASALC---KRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA~~L~---~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 120 (567)
..+++.+.......++..+. ..++++|++|+|+..-+.-.+++.+|- ..|+.++.+. +.+++ .++++.+++.
T Consensus 114 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~-~~~~~lGa~~ 188 (315)
T 3goh_A 114 DNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQ-ALAAKRGVRH 188 (315)
T ss_dssp TTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCH-HHHHHHTEEE
T ss_pred CCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhH-HHHHHcCCCE
Confidence 56788887644444444333 358899999999999667777777765 4688766665 33333 3456678888
Q ss_pred EE
Q 008389 121 IM 122 (567)
Q Consensus 121 vi 122 (567)
++
T Consensus 189 v~ 190 (315)
T 3goh_A 189 LY 190 (315)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 108
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=25.75 E-value=3.9e+02 Score=24.54 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=45.6
Q ss_pred HHcc-CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEccc
Q 008389 63 CKRS-IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126 (567)
Q Consensus 63 ~~~g-~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (567)
.+.| +++++.|... ..+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444 5677776654 4455556677777888998887777666666677889999999999863
No 109
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=25.54 E-value=2.3e+02 Score=26.33 Aligned_cols=11 Identities=9% Similarity=-0.157 Sum_probs=5.0
Q ss_pred CCCCEEEEEcC
Q 008389 68 GLGCTVAIIAP 78 (567)
Q Consensus 68 ~~gd~V~l~~~ 78 (567)
++||.|.+..+
T Consensus 87 ~~gd~vl~~~~ 97 (384)
T 1eg5_A 87 KRKRTIITTPI 97 (384)
T ss_dssp TTCCEEEECTT
T ss_pred CCCCEEEECCC
Confidence 34555544433
No 110
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=24.93 E-value=4.3e+02 Score=24.71 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=16.1
Q ss_pred CCCCCeeeeccHHHHHHHHHHHHH
Q 008389 207 TASPKGVVLSHRGAYLMSLSVALI 230 (567)
Q Consensus 207 TG~pK~v~~t~~~l~~~~~~~~~~ 230 (567)
+|.+-|.++..+.+...+......
T Consensus 258 ~G~r~G~~~~~~~~~~~l~~~~~~ 281 (407)
T 3nra_A 258 SGYRLGVAFGSRAIIARMEKLQAI 281 (407)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHHH
T ss_pred CeeeEEEEEcCHHHHHHHHHHHhh
Confidence 456678888888877666554443
No 111
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=24.37 E-value=1.8e+02 Score=27.41 Aligned_cols=54 Identities=17% Similarity=0.137 Sum_probs=24.0
Q ss_pred cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-----CChHHHHHHHhccCceEEEE
Q 008389 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-----LNAPTIAFLLGHSASAVIMV 123 (567)
Q Consensus 66 g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 123 (567)
++++||.|.+..+...... -++...|+.++.++.+ ...+.+...++. ++++|+.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp TCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred CCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 3456666555444433322 2233445544444321 344555555543 4455543
No 112
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=24.35 E-value=1.9e+02 Score=27.11 Aligned_cols=79 Identities=9% Similarity=-0.043 Sum_probs=49.9
Q ss_pred ccccHHHHHHHHHHH---HHHHHHccCC-CCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCce
Q 008389 44 TRYTWLQTYQRCRRL---ASALCKRSIG-LGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASA 119 (567)
Q Consensus 44 ~~~Ty~el~~~~~~l---A~~L~~~g~~-~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 119 (567)
..+++.+........ -..|.+.+++ +|++|+|+..-++-.+++.+|-. .|+.++.+.. +.+.+....++.+++
T Consensus 151 ~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~-~Ga~Vi~~~~--~~~~~~~~~~~lGa~ 227 (357)
T 2cf5_A 151 EGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKA-MGHHVTVISS--SNKKREEALQDLGAD 227 (357)
T ss_dssp SSCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHH-HTCEEEEEES--STTHHHHHHTTSCCS
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--ChHHHHHHHHHcCCc
Confidence 457777654322211 1234456888 99999999876777777777764 5886555543 344555555578887
Q ss_pred EEEEcc
Q 008389 120 VIMVDQ 125 (567)
Q Consensus 120 ~vi~~~ 125 (567)
.++...
T Consensus 228 ~vi~~~ 233 (357)
T 2cf5_A 228 DYVIGS 233 (357)
T ss_dssp CEEETT
T ss_pred eeeccc
Confidence 777544
No 113
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=24.32 E-value=1.9e+02 Score=26.95 Aligned_cols=75 Identities=9% Similarity=-0.090 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHH---HHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceE
Q 008389 44 TRYTWLQTYQRCRRL---ASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120 (567)
Q Consensus 44 ~~~Ty~el~~~~~~l---A~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 120 (567)
..+++.+........ -..|.+.++++|++|+|+..-++-.+++.+|- ..|+.++.+..+ .+++ .++++.+++.
T Consensus 148 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~--~~~~-~~~~~lGa~~ 223 (348)
T 3two_A 148 KNAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARN--EHKK-QDALSMGVKH 223 (348)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSS--STTH-HHHHHTTCSE
T ss_pred CCCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCC--HHHH-HHHHhcCCCe
Confidence 457777765332221 13345568999999999987667777777775 468876665433 3333 2455677777
Q ss_pred EE
Q 008389 121 IM 122 (567)
Q Consensus 121 vi 122 (567)
++
T Consensus 224 v~ 225 (348)
T 3two_A 224 FY 225 (348)
T ss_dssp EE
T ss_pred ec
Confidence 77
No 114
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=24.18 E-value=1.8e+02 Score=26.90 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=50.9
Q ss_pred ccccHHHHHHHHHHH---HHHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceE
Q 008389 44 TRYTWLQTYQRCRRL---ASALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAV 120 (567)
Q Consensus 44 ~~~Ty~el~~~~~~l---A~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~ 120 (567)
..+++.+........ -..|...++++|++|+|....++-.+++.+|-. .|+.++.+.. +.+.+ .++++.++..
T Consensus 138 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~-~Ga~Vi~~~~--~~~~~-~~~~~lGa~~ 213 (340)
T 3s2e_A 138 DKVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARA-MGLRVAAVDI--DDAKL-NLARRLGAEV 213 (340)
T ss_dssp TTSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHH-TTCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeC--CHHHH-HHHHHcCCCE
Confidence 467777765332222 233445589999999998876677777777764 5887665543 34444 3567788888
Q ss_pred EEEccc
Q 008389 121 IMVDQE 126 (567)
Q Consensus 121 vi~~~~ 126 (567)
++...+
T Consensus 214 ~i~~~~ 219 (340)
T 3s2e_A 214 AVNARD 219 (340)
T ss_dssp EEETTT
T ss_pred EEeCCC
Confidence 775443
No 115
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=23.99 E-value=3.3e+02 Score=24.38 Aligned_cols=56 Identities=14% Similarity=0.103 Sum_probs=41.0
Q ss_pred HHhhhhhcCCCceeEEECC------ccccHHHHHHHHHHHHHHHHHccCCCCCEEEEEcCChHHHH
Q 008389 25 FLDRAATVHPTRTSVVHGS------TRYTWLQTYQRCRRLASALCKRSIGLGCTVAIIAPNIPAIY 84 (567)
Q Consensus 25 ~l~~~a~~~p~~~a~~~~~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~l~~~~~~~~~ 84 (567)
.+++..+.-|+...+.+.+ ...|..++.+.+.+.+.+|.+.|. ...+++-|+...+
T Consensus 20 v~~~i~~~lP~~~~iy~~D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 20 VVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHCTTCCEEEEECGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 3444445678888887754 678999999999999999998754 3555566676654
No 116
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=23.97 E-value=3.8e+02 Score=25.04 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=34.5
Q ss_pred cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-----CChHHHHHHHhccCceEEEE
Q 008389 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-----LNAPTIAFLLGHSASAVIMV 123 (567)
Q Consensus 66 g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-----~~~~~l~~~l~~~~~~~vi~ 123 (567)
++++||.|.+..+....... ++...|+.++.++.+ ...+.+...++. +.++|+.
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~ 134 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILT 134 (390)
T ss_dssp SCCTTCEEEEESSSCHHHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEE
Confidence 57889988887666544433 344577766655443 356777777764 5666665
No 117
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=23.75 E-value=1.4e+02 Score=27.04 Aligned_cols=64 Identities=9% Similarity=0.100 Sum_probs=38.6
Q ss_pred chHHHHHHHhcCCCceeeEEEEeecCCCCCcceEEEEEcCCccchhhHHHHHHHHHHHHhcCCC
Q 008389 464 SSVEVENMMYLHPAVLEASVVARADERWGESPCAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPA 527 (567)
Q Consensus 464 ~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~ 527 (567)
...+|++.+.++|+|.++-=+-...-.......+.++..++.+-.+..++.+++++.+++++|.
T Consensus 207 ~~~~i~~~i~~~~~V~~v~~l~~~~~G~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~ 270 (283)
T 3h90_A 207 ERQEIIDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG 270 (283)
T ss_dssp HHHHHHHHHHHSSSCSEEEEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHhcCCCcccceeeEEEEECCcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567888888899876654332222111123445555555543345566778888888888774
No 118
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=23.73 E-value=1.7e+02 Score=26.86 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=49.8
Q ss_pred ccccHHHHHHHHHHHH---HHHHHccCCCCCEEEEEc-CChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCce
Q 008389 44 TRYTWLQTYQRCRRLA---SALCKRSIGLGCTVAIIA-PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASA 119 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA---~~L~~~g~~~gd~V~l~~-~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~ 119 (567)
..+++.+......... ..|...++++|++|+|+. .-++-.+++.+|- ..|+.++.+. +.++ ..++++.++.
T Consensus 124 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~ 198 (321)
T 3tqh_A 124 EKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAE 198 (321)
T ss_dssp TTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCS
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCC
Confidence 4577877665433321 233456899999999996 5667777777765 5688765543 3444 4566777887
Q ss_pred EEEEcc
Q 008389 120 VIMVDQ 125 (567)
Q Consensus 120 ~vi~~~ 125 (567)
.++...
T Consensus 199 ~~i~~~ 204 (321)
T 3tqh_A 199 QCINYH 204 (321)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 766543
No 119
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=23.55 E-value=4.3e+02 Score=24.56 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-------CChHHHHHHHhccCceEEEE
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-------LNAPTIAFLLGHSASAVIMV 123 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~ 123 (567)
.++||.|.+..|.-..+. .++...|+.++.++.. ...+.+...++..++++|+.
T Consensus 108 ~~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 108 SETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp SCTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred cCCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 356788877666544433 2234456665555431 56777877776656676664
No 120
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=23.22 E-value=59 Score=29.27 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=20.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCC
Q 008389 56 RRLASALCKRSIGLGCTVAIIAPN 79 (567)
Q Consensus 56 ~~lA~~L~~~g~~~gd~V~l~~~~ 79 (567)
..+.+.|+++||++||.|.++..=
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHcCCCCCCEEEEEech
Confidence 567788999999999999998763
No 121
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}
Probab=23.12 E-value=2.4e+02 Score=25.94 Aligned_cols=60 Identities=10% Similarity=-0.014 Sum_probs=41.8
Q ss_pred CCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHH
Q 008389 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL 130 (567)
Q Consensus 70 gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (567)
++.|.. ...+=.-..+.++|.+.|..++.+-|...+......++..++++++++..+.+.
T Consensus 54 ~~~vv~-~ssGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~ 113 (318)
T 2rkb_A 54 CRHLVC-SSGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEA 113 (318)
T ss_dssp CCEEEE-CCCSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHHH
T ss_pred CCEEEE-ECCchHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHhcCCEEEEECCCHHHH
Confidence 444444 334555555667788999988877666555666778899999999988755443
No 122
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=22.89 E-value=1.8e+02 Score=27.17 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=15.6
Q ss_pred hcCCeeeeccccCCh-HHHHHHHhccCceEEEEc
Q 008389 92 MAGAVLNAVNIRLNA-PTIAFLLGHSASAVIMVD 124 (567)
Q Consensus 92 ~~G~~~v~i~~~~~~-~~l~~~l~~~~~~~vi~~ 124 (567)
.-|-.++..++.++. ......+...+.+++.++
T Consensus 86 ~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (382)
T 4eb5_A 86 RKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIP 119 (382)
T ss_dssp GGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEEC
T ss_pred CCCCEEEECCCcchHHHHHHHHHHhCCcEEEEec
Confidence 345444444444432 122333445666666654
No 123
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=22.79 E-value=3.9e+02 Score=25.01 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc-------CChHHHHHHHhccCceEEEE
Q 008389 68 GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR-------LNAPTIAFLLGHSASAVIMV 123 (567)
Q Consensus 68 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~-------~~~~~l~~~l~~~~~~~vi~ 123 (567)
++||.|.+..|.-..+. .++...|+.++.++.. ...+.+...++..++++|+.
T Consensus 111 ~~gd~vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~ 170 (399)
T 1c7n_A 111 KPGDGVIIITPVYYPFF---MAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLF 170 (399)
T ss_dssp CTTCEEEECSSCCTHHH---HHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEE
T ss_pred CCCCEEEEcCCCcHhHH---HHHHHcCCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEE
Confidence 56777777555433332 2334456666555432 55777777776556666664
No 124
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=22.74 E-value=2.2e+02 Score=26.94 Aligned_cols=56 Identities=5% Similarity=0.011 Sum_probs=31.0
Q ss_pred cCCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc----CChHHHHHHHhcc--CceEEEEc
Q 008389 66 SIGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR----LNAPTIAFLLGHS--ASAVIMVD 124 (567)
Q Consensus 66 g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~----~~~~~l~~~l~~~--~~~~vi~~ 124 (567)
++++||.|.+..+....... ++...|+.++.++.+ ...+.+...++.. ++++|+..
T Consensus 68 ~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 68 GVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp TCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred CCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 46678877776665544332 223356666555432 3566777666543 45555543
No 125
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=22.71 E-value=3.8e+02 Score=24.93 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=32.0
Q ss_pred CCCCCEEEEEcCChHHHHHHHHhhhhcCCeeeecccc--------CChHHHHHHHhccCceEEEE
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIR--------LNAPTIAFLLGHSASAVIMV 123 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~--------~~~~~l~~~l~~~~~~~vi~ 123 (567)
+++||.|.+..|.-..+. .++...|+.++.++.. ...+.+...++. +++|+.
T Consensus 111 ~~~gd~vl~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~v~i 170 (391)
T 4dq6_A 111 TKANDKIMIQEPVYSPFN---SVVKNNNRELIISPLQKLENGNYIMDYEDIENKIKD--VKLFIL 170 (391)
T ss_dssp SCTTCEEEECSSCCTHHH---HHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCTT--EEEEEE
T ss_pred CCCCCEEEEcCCCCHHHH---HHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhhc--CCEEEE
Confidence 457888777655444332 2344567776666544 467888888877 666554
No 126
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=22.71 E-value=4.4e+02 Score=24.01 Aligned_cols=89 Identities=8% Similarity=-0.054 Sum_probs=55.1
Q ss_pred CceeEEECC--ccccHHHHHHHHHHHHHHHHHccC-CCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHH
Q 008389 35 TRTSVVHGS--TRYTWLQTYQRCRRLASALCKRSI-GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAF 111 (567)
Q Consensus 35 ~~~a~~~~~--~~~Ty~el~~~~~~lA~~L~~~g~-~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~ 111 (567)
.++.+-.++ .+-|+++--. ..+...+.+.|. ++|+.|... ..+=.-..+.++|.+.|..++.+-|...+..-..
T Consensus 26 ~~i~~K~E~~~ptGSfK~R~a--~~~i~~a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~ 102 (316)
T 1y7l_A 26 GNVVVKIEGRNPSYSVKCRIG--ANMVWQAEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKR 102 (316)
T ss_dssp TCEEEEETTSSGGGBTHHHHH--HHHHHHHHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHH
T ss_pred CEEEEEeccCCCCCChHHHHH--HHHHHHHHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 456665543 4445555433 222223334444 666655554 3455556666777899988877766655556667
Q ss_pred HHhccCceEEEEccc
Q 008389 112 LLGHSASAVIMVDQE 126 (567)
Q Consensus 112 ~l~~~~~~~vi~~~~ 126 (567)
.++..++++++++..
T Consensus 103 ~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 103 LLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHHTTCEEEEECGG
T ss_pred HHHHcCCEEEEeCCC
Confidence 889999999999875
No 127
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=22.32 E-value=3e+02 Score=25.38 Aligned_cols=12 Identities=8% Similarity=-0.180 Sum_probs=5.6
Q ss_pred CCCCEEEEEcCC
Q 008389 68 GLGCTVAIIAPN 79 (567)
Q Consensus 68 ~~gd~V~l~~~~ 79 (567)
++||.|.+..+.
T Consensus 91 ~~gd~vl~~~~~ 102 (371)
T 2e7j_A 91 KKDAWVVMDENC 102 (371)
T ss_dssp CTTCEEEEETTC
T ss_pred CCCCEEEEccCc
Confidence 345555444443
No 128
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=21.96 E-value=2.3e+02 Score=26.52 Aligned_cols=80 Identities=11% Similarity=-0.007 Sum_probs=49.7
Q ss_pred ccccHHHHHHHH--HHHH-HHHHH-ccCCCCCEEEEEcC-ChHHHHHHHHhhhhcCCeeee-ccccCChHHHHHHHhccC
Q 008389 44 TRYTWLQTYQRC--RRLA-SALCK-RSIGLGCTVAIIAP-NIPAIYEAHFGVPMAGAVLNA-VNIRLNAPTIAFLLGHSA 117 (567)
Q Consensus 44 ~~~Ty~el~~~~--~~lA-~~L~~-~g~~~gd~V~l~~~-~~~~~~~~~lA~~~~G~~~v~-i~~~~~~~~l~~~l~~~~ 117 (567)
..+++.+..... -..| ..|.+ .++++|++|+|+.. -++-.+++.+|-. .|+..+. .......++...+++..+
T Consensus 138 ~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~-~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (357)
T 1zsy_A 138 SDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAA-LGLRTINVVRDRPDIQKLSDRLKSLG 216 (357)
T ss_dssp SSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHH-HTCEEEEEECCCSCHHHHHHHHHHTT
T ss_pred CCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHH-cCCEEEEEecCccchHHHHHHHHhcC
Confidence 457777754431 1122 23334 48999999999987 5677777777764 5875443 333333344456677888
Q ss_pred ceEEEEc
Q 008389 118 SAVIMVD 124 (567)
Q Consensus 118 ~~~vi~~ 124 (567)
+..++..
T Consensus 217 a~~vi~~ 223 (357)
T 1zsy_A 217 AEHVITE 223 (357)
T ss_dssp CSEEEEH
T ss_pred CcEEEec
Confidence 8887753
No 129
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=21.92 E-value=1.9e+02 Score=26.92 Aligned_cols=78 Identities=14% Similarity=-0.001 Sum_probs=49.4
Q ss_pred ccccHHHHHHHHHHHH---HHHHHccCCCCCEEEEEcCChHHHHHHHHhhhhcCC-eeeeccccCChHHHHHHHhccCce
Q 008389 44 TRYTWLQTYQRCRRLA---SALCKRSIGLGCTVAIIAPNIPAIYEAHFGVPMAGA-VLNAVNIRLNAPTIAFLLGHSASA 119 (567)
Q Consensus 44 ~~~Ty~el~~~~~~lA---~~L~~~g~~~gd~V~l~~~~~~~~~~~~lA~~~~G~-~~v~i~~~~~~~~l~~~l~~~~~~ 119 (567)
..+++.+.......++ ..+...++++|++|+|+..-++-.+++.+|- ..|+ .++.++. +.++ ..++++.+++
T Consensus 138 ~~~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~ 213 (352)
T 3fpc_A 138 KEIPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGAT 213 (352)
T ss_dssp TTSCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCC
T ss_pred CCCCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCc
Confidence 5677776643322222 2345568999999999987667777777765 5687 4555543 2333 3566778888
Q ss_pred EEEEcc
Q 008389 120 VIMVDQ 125 (567)
Q Consensus 120 ~vi~~~ 125 (567)
.++...
T Consensus 214 ~vi~~~ 219 (352)
T 3fpc_A 214 DIINYK 219 (352)
T ss_dssp EEECGG
T ss_pred eEEcCC
Confidence 777543
No 130
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.75 E-value=1.5e+02 Score=20.38 Aligned_cols=24 Identities=25% Similarity=0.055 Sum_probs=19.2
Q ss_pred hHHHHHHHhcCCCceeeEEEEeec
Q 008389 465 SVEVENMMYLHPAVLEASVVARAD 488 (567)
Q Consensus 465 ~~~iE~~l~~~~~i~~~~v~~~~~ 488 (567)
..++++.+.++|+|.+|..+..+.
T Consensus 15 ~~~~~~~l~~~peV~~~~~vtG~~ 38 (83)
T 2zbc_A 15 EDEVFERLKSMSEVTEVHVVYGVY 38 (83)
T ss_dssp HHHHHHHHTTCTTEEEEEECSSSC
T ss_pred HHHHHHHHhCCCCeEEEEEEeccC
Confidence 378999999999999988765433
No 131
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=21.35 E-value=3.9e+02 Score=25.80 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=36.3
Q ss_pred CCCCCEEEEEcCChHHHHHHHH---------hhhhcCCeeeecccc----CChHHHHHHHhc-cCceEEEEcc
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHF---------GVPMAGAVLNAVNIR----LNAPTIAFLLGH-SASAVIMVDQ 125 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~l---------A~~~~G~~~v~i~~~----~~~~~l~~~l~~-~~~~~vi~~~ 125 (567)
+++||.|.+...........++ .+...|+.+..++.+ ...+.+...++. -++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 5788988775412333222222 234558777777653 567888888874 4778887765
No 132
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=21.16 E-value=69 Score=29.10 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcC
Q 008389 57 RLASALCKRSIGLGCTVAIIAP 78 (567)
Q Consensus 57 ~lA~~L~~~g~~~gd~V~l~~~ 78 (567)
.|.+.|+++||++||.|.++..
T Consensus 26 ~L~~~L~~LGI~~Gd~llVHsS 47 (286)
T 3sma_A 26 RLASDLAALGVRPGGVLLVHAS 47 (286)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 4567889999999999999875
No 133
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=21.16 E-value=1.8e+02 Score=27.03 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHhccCceEEEEc
Q 008389 112 LLGHSASAVIMVD 124 (567)
Q Consensus 112 ~l~~~~~~~vi~~ 124 (567)
.+...+++++.++
T Consensus 107 ~~~~~g~~~~~v~ 119 (382)
T 4hvk_A 107 FLQKQGFEVEYIP 119 (382)
T ss_dssp HHHHTTCEEEEEC
T ss_pred HHHhcCCEEEEec
Confidence 3344455555544
No 134
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=21.07 E-value=4.5e+02 Score=25.14 Aligned_cols=58 Identities=12% Similarity=0.058 Sum_probs=35.1
Q ss_pred CCCCCEEEEEcCChHHHHHHHH--------hhhhcCCeeeecccc----CChHHHHHHHhccCceEEEEcc
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHF--------GVPMAGAVLNAVNIR----LNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~l--------A~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
+++||.|.+...........++ .+...|+.+..++.+ ...+.+...++. +.++|+++.
T Consensus 98 l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~ 167 (409)
T 3jzl_A 98 LRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQR 167 (409)
T ss_dssp CCTTCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEEC
T ss_pred cCCCCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEEC
Confidence 5789988776523333333332 344567777776653 567777777754 667777654
No 135
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=20.94 E-value=69 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=19.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcC
Q 008389 57 RLASALCKRSIGLGCTVAIIAP 78 (567)
Q Consensus 57 ~lA~~L~~~g~~~gd~V~l~~~ 78 (567)
.|.+.|+++||++||.|.++..
T Consensus 17 ~L~~~L~~LGI~~Gd~llVHsS 38 (273)
T 2nyg_A 17 SITEDLKALGLKKGMTVLVHSS 38 (273)
T ss_dssp HHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEEec
Confidence 4678899999999999999875
No 136
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Probab=20.84 E-value=2.7e+02 Score=26.38 Aligned_cols=60 Identities=10% Similarity=-0.048 Sum_probs=41.9
Q ss_pred CCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHH
Q 008389 70 GCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKL 130 (567)
Q Consensus 70 gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (567)
++.|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..+.+.
T Consensus 93 ~~~vv~-aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~a 152 (372)
T 1p5j_A 93 CAHFVC-SSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEA 152 (372)
T ss_dssp CCEEEE-CCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHHH
T ss_pred CCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHHH
Confidence 344443 333555556667788999988877776666666778899999999988754443
No 137
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=20.64 E-value=3.1e+02 Score=25.68 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=42.6
Q ss_pred HHHHccCC-CCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcc
Q 008389 61 ALCKRSIG-LGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 61 ~L~~~g~~-~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
.|.+.++. +|++|+|...-++-..++.+|- ..|+.++.+.. +.+.+....+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 34556888 9999999987677777777765 46886555443 455555555577887776543
No 138
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Probab=20.47 E-value=5.5e+02 Score=24.35 Aligned_cols=63 Identities=11% Similarity=-0.067 Sum_probs=44.8
Q ss_pred CCC-EEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEcccchHHHH
Q 008389 69 LGC-TVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQEYFKLAE 132 (567)
Q Consensus 69 ~gd-~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 132 (567)
+++ .|.. ...+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..+.+...
T Consensus 110 ~~~~~vv~-aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~ 173 (398)
T 4d9i_A 110 GEKMTFAT-TTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVR 173 (398)
T ss_dssp SCCCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHH
T ss_pred cCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHH
Confidence 344 4443 55555556667778888998887777666667778889999999999886544443
No 139
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.44 E-value=3.9e+02 Score=25.04 Aligned_cols=52 Identities=12% Similarity=0.037 Sum_probs=22.9
Q ss_pred CCCCEEEEEcCChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhcc---CceEEEE
Q 008389 68 GLGCTVAIIAPNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHS---ASAVIMV 123 (567)
Q Consensus 68 ~~gd~V~l~~~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~---~~~~vi~ 123 (567)
++||.|.+..|...... -++...|+.+++++. ...+.+...++.. ++++|++
T Consensus 125 ~~gd~V~~~~p~~~~~~---~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~ 179 (398)
T 3a2b_A 125 GRNDYILLDERDHASII---DGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICT 179 (398)
T ss_dssp CTTCEEEEETTCCHHHH---HHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred CCCCEEEECCccCHHHH---HHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEE
Confidence 45555555444333222 123334555554433 3445555555443 3444443
No 140
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*
Probab=20.24 E-value=4.8e+02 Score=23.56 Aligned_cols=49 Identities=6% Similarity=-0.138 Sum_probs=35.0
Q ss_pred CChHHHHHHHHhhhhcCCeeeeccccCChHHHHHHHhccCceEEEEccc
Q 008389 78 PNIPAIYEAHFGVPMAGAVLNAVNIRLNAPTIAFLLGHSASAVIMVDQE 126 (567)
Q Consensus 78 ~~~~~~~~~~lA~~~~G~~~v~i~~~~~~~~l~~~l~~~~~~~vi~~~~ 126 (567)
..+=.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 72 SsGN~g~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 120 (303)
T 1o58_A 72 TSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120 (303)
T ss_dssp CSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred CchHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3344444556667789988777666555556667889999999998865
No 141
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Probab=20.21 E-value=2.8e+02 Score=25.87 Aligned_cols=54 Identities=13% Similarity=-0.103 Sum_probs=37.7
Q ss_pred cCChHHHHHHHHhhhhcCCeeeeccccC-ChHHHHHHHhccCceEEEEcccchHH
Q 008389 77 APNIPAIYEAHFGVPMAGAVLNAVNIRL-NAPTIAFLLGHSASAVIMVDQEYFKL 130 (567)
Q Consensus 77 ~~~~~~~~~~~lA~~~~G~~~v~i~~~~-~~~~l~~~l~~~~~~~vi~~~~~~~~ 130 (567)
...+=.-..+.++|.+.|..++.+-|.. .+..-...++..++++++++..+.+.
T Consensus 83 ~SsGN~g~alA~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~~ 137 (351)
T 3aey_A 83 ASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDA 137 (351)
T ss_dssp SCSSHHHHHHHHHHHHHTSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred eCCCHHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHH
Confidence 4444444555688889999887776654 44555578889999999998764433
No 142
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=20.19 E-value=1.3e+02 Score=20.45 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=36.5
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHHHhcCCCCCCCceeecCcccCCC---Ccccc
Q 008389 496 CAFVTLKPEVDKSNEQQLAEDIMKFCRAKMPAYWVPKSIVFGPLPKTA---TGKIQ 548 (567)
Q Consensus 496 ~~~v~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~~~lP~t~---~GKi~ 548 (567)
++-+.+..|......+.+.+++.+.+.+.|..-..-.+|.+.++|+.. .|++.
T Consensus 2 i~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~~ 57 (70)
T 3ej9_B 2 FIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRIH 57 (70)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCCT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeEc
Confidence 445556677656666777788888888888766555677777788754 56665
No 143
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=20.03 E-value=3.6e+02 Score=26.02 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=35.6
Q ss_pred CCCCCEEEEEcCChHHHHHHHH--------hhhhcCCeeeecccc----CChHHHHHHHhccCceEEEEcc
Q 008389 67 IGLGCTVAIIAPNIPAIYEAHF--------GVPMAGAVLNAVNIR----LNAPTIAFLLGHSASAVIMVDQ 125 (567)
Q Consensus 67 ~~~gd~V~l~~~~~~~~~~~~l--------A~~~~G~~~v~i~~~----~~~~~l~~~l~~~~~~~vi~~~ 125 (567)
+++||.|.+........+...+ .+...|+.++.++.+ ...+.+...++. +.++|+++.
T Consensus 104 ~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~ 173 (431)
T 3ht4_A 104 LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHS-NTKMIGIQR 173 (431)
T ss_dssp CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCT-TEEEEEEEC
T ss_pred CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCC-CCeEEEEEC
Confidence 6789988776512222222222 233467777777654 567888887764 677887663
Done!