Query 008391
Match_columns 567
No_of_seqs 171 out of 257
Neff 4.0
Searched_HMMs 46136
Date Thu Mar 28 23:14:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008391.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008391hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03094 Mlo: Mlo family; Int 100.0 4E-194 8E-199 1528.7 39.8 472 7-496 1-477 (478)
2 PRK11677 hypothetical protein; 55.7 22 0.00048 33.8 5.0 60 16-79 2-70 (134)
3 PF01578 Cytochrom_C_asm: Cyto 55.0 30 0.00064 33.7 6.0 30 51-80 116-145 (214)
4 PF06305 DUF1049: Protein of u 54.4 47 0.001 26.7 6.1 47 17-63 18-64 (68)
5 COG1033 Predicted exporters of 53.5 26 0.00057 41.4 6.2 56 20-75 251-317 (727)
6 PF07219 HemY_N: HemY protein 51.2 30 0.00065 30.8 4.9 46 13-58 13-65 (108)
7 TIGR03144 cytochr_II_ccsB cyto 34.2 1.4E+02 0.0031 30.2 7.3 29 51-79 142-170 (243)
8 COG3105 Uncharacterized protei 29.5 97 0.0021 29.8 4.8 60 16-79 7-75 (138)
9 PF15468 DUF4636: Domain of un 26.3 19 0.00042 37.0 -0.4 29 270-301 25-53 (243)
10 PF14015 DUF4231: Protein of u 26.3 1.8E+02 0.0039 25.2 5.7 42 18-65 53-94 (112)
11 TIGR00540 hemY_coli hemY prote 26.2 1E+02 0.0022 33.0 4.9 37 13-49 38-81 (409)
12 COG3071 HemY Uncharacterized e 26.1 1.1E+02 0.0023 34.2 5.0 48 14-61 39-97 (400)
13 PF12801 Fer4_5: 4Fe-4S bindin 25.8 1.1E+02 0.0024 23.1 3.8 24 16-39 2-25 (48)
14 TIGR03777 RPE4 Rickettsial pal 25.6 30 0.00066 25.7 0.6 9 348-356 24-32 (32)
15 PRK10747 putative protoheme IX 23.5 1.1E+02 0.0025 32.7 4.7 37 13-49 38-81 (398)
16 TIGR02976 phageshock_pspB phag 23.3 2.4E+02 0.0051 24.5 5.7 29 16-44 3-31 (75)
17 PHA03105 EEV glycoprotein; Pro 23.0 87 0.0019 31.1 3.3 33 19-51 9-41 (188)
18 PF05568 ASFV_J13L: African sw 22.0 1.7E+02 0.0037 28.8 5.0 45 12-58 21-65 (189)
19 TIGR00921 2A067 The (Largely A 21.1 3.1E+02 0.0067 31.5 7.8 55 19-73 621-685 (719)
No 1
>PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane
Probab=100.00 E-value=3.9e-194 Score=1528.70 Aligned_cols=472 Identities=60% Similarity=1.056 Sum_probs=447.8
Q ss_pred cccccccCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q 008391 7 YERTLEETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELMLLGFISLLLTVLQEPISGICVS 86 (567)
Q Consensus 7 ~~rsLe~TPTWaVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeKiKeELMLLGFISLLLtv~q~~IskICIp 86 (567)
|+|+||+|||||||+||+|||+||+++||+||+|||||+|++||+|+|||||||+|||||||||||||++|++|+|||||
T Consensus 1 e~rsLe~TptW~va~v~~v~v~is~~~E~~lh~l~~~l~~~~~k~L~~aLekik~ELMlLGfiSLlLt~~q~~IskICIp 80 (478)
T PF03094_consen 1 EGRSLEETPTWAVAVVCTVFVVISILLERGLHRLGKWLKKKKRKALYEALEKIKEELMLLGFISLLLTVFQNPISKICIP 80 (478)
T ss_pred CCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHeecC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccCCcccccccccCCchhhhHhhhhhccCCCcccccccc---ccCCCccccCCceeeecccchhhHHHHHHHH
Q 008391 87 KSVANSWHPCTDKLEKDAYSSDNKESRRRLLSFLDSGTASTRRSLA---TKGYDKCADEGKVAFVSAYGIHQLHIFIFVL 163 (567)
Q Consensus 87 ~~~~~~mlPC~~~~~~~~~~~~~~~~rr~L~~~~~~~~~~~rR~la---~~~~~~C~~~GkvplvS~~glHQLHIFIFVL 163 (567)
++++++|+||+..++.++.. +... .||+|+ +++.++|++||||||+|.|||||||||||||
T Consensus 81 ~~~~~~~lPC~~~~~~~~~~--~~~~--------------~r~ll~~~~~~~~~~C~~kGkvpliS~egLHQLHIFIFVL 144 (478)
T PF03094_consen 81 SSYASTMLPCKPPEESSKEG--SSHN--------------RRRLLASGAAEGSDYCPKKGKVPLISAEGLHQLHIFIFVL 144 (478)
T ss_pred hhHHhcccCCCCcccccccc--cchh--------------hhhhhhhhcccccCcccccCccccccchhHHHHHHHHHHH
Confidence 99999999999755433211 1112 344443 3456899988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcccccccCCCceeeeeeecccccccccCCCCchhHHHHHHHHHHhhcCCc
Q 008391 164 AVFHVLYCLFTLALGRTKMKKWKAWENETKTIEYQYYNDPERFRFARDTSFGRRHLNIWSKSSISLWIVCFFRQFLGSVN 243 (567)
Q Consensus 164 AV~HV~Ys~lTm~Lg~~Kir~Wk~WE~et~t~~~q~~~dp~r~r~~~qtsF~r~h~~~ws~~~~l~wivcFfrQF~~SV~ 243 (567)
||+||+|||+||+||++|||+||+||+|+++++||..+||+|+|++||++|+|+|.++|++++++.|++|||||||+||+
T Consensus 145 AV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~~~~~wi~~FfrQF~~SV~ 224 (478)
T PF03094_consen 145 AVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKSPVLSWIVCFFRQFYGSVT 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccChhHHhHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhHHHHhhcCCCCCCccchHHHHHHHHhhcccceeecchhHHHHHHHHHhhccCcceeeeecchhHHHHHHHH
Q 008391 244 KIDYHTLRHGFIMAHLAPGSETKFDFQKYISRSLEEDFKDVVGITPILWFIATLFLLTNTHGWFAYLWLPFIPLFIILLV 323 (567)
Q Consensus 244 k~DYltLR~GFI~~H~~~~s~~kFdFhkYi~RsLEdDFk~VVGIS~~lW~fvvlFlLlnv~Gw~~yfWlsfiPlillLlV 323 (567)
|+||+|||+|||++|++||+ ||||||||+||||||||+||||||+||+|||+|||+|++|||+|||++|||++++|+|
T Consensus 225 k~DYltLR~gFI~~H~~~~~--~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~~yfW~sfipl~liL~V 302 (478)
T PF03094_consen 225 KSDYLTLRHGFITAHLLPNP--KFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWHTYFWLSFIPLILILLV 302 (478)
T ss_pred HHHHHHHHHHHHHhhcCCCC--CCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcceeEeehhHHHHHHHHHH
Confidence 99999999999999999866 9999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCcccCCceeccCCCccccCCchHHHHHHHHHHHhhhhhHHHHHhhhhccccccccccCccc
Q 008391 324 GAKLQVIITKLGLRIQERGDVVKGAPVVQPGDDLFWFGRPRFILFLIHLVLFQNAFQLAFFSWSTYEFALKSCFHKKTED 403 (567)
Q Consensus 324 GtKLq~IIt~malei~e~~~~v~G~p~V~psD~lFWF~rP~llL~LIHfiLFQNAFelAfF~W~~~~fG~~SCf~~~~~~ 403 (567)
|||||+|||+||+||+|++++++|+|+|||+|++||||||+|||+||||||||||||||||+|+||+||++||||++.++
T Consensus 303 GtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~~~~~g~~sC~~~~~~~ 382 (478)
T PF03094_consen 303 GTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWIWWQFGFDSCFMENTEY 382 (478)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCceeEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeechhhhhcccccccchhhHhhhhcCCcccccccHHHHHHHHHHHHHHhhcccCCCC--CCCCCCCCCCCCCCCC
Q 008391 404 IAIRISMGVLIQILCSYVTLPLYALVTQMGSTMKPTIFNDRVAAALKNWHHIAKKHTKQGRL--SGSNTPMSSRPQTPTH 481 (567)
Q Consensus 404 ii~Rl~~Gv~vQ~LCSY~TLPLYALVTQMGS~~K~~if~e~v~~aL~~W~~~akk~~k~~~~--~~~~~~~~~~~~t~~~ 481 (567)
+++|+++||++|++|||+|||||||||||||+||++||+|+|+++|++||++||||+|+++. ++..++.++++++|++
T Consensus 383 ~i~rl~~gv~vq~lcsy~tLPLYaLVTqMGS~~K~~if~e~v~~al~~W~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (478)
T PF03094_consen 383 IIIRLVMGVVVQVLCSYVTLPLYALVTQMGSHMKKAIFNEQVSKALKKWHKKAKKKKKHKKSAHSGSTTPGSSRSTTPSR 462 (478)
T ss_pred eeeehhhhhhhhhhcchhhhhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999887653 4567777888889999
Q ss_pred CCCcccccCCCCCCC
Q 008391 482 GMSPVHLLHNYPNSS 496 (567)
Q Consensus 482 ~~s~~~~l~~~~~s~ 496 (567)
++||+|+||++++.+
T Consensus 463 ~~S~~~ll~~~~~~~ 477 (478)
T PF03094_consen 463 GSSPVHLLHRFKTRS 477 (478)
T ss_pred CCCchhhhccCCCCC
Confidence 999999999997654
No 2
>PRK11677 hypothetical protein; Provisional
Probab=55.73 E-value=22 Score=33.75 Aligned_cols=60 Identities=30% Similarity=0.322 Sum_probs=36.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHH---------HHHHHHHHHHHhhhcc
Q 008391 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAEL---------MLLGFISLLLTVLQEP 79 (567)
Q Consensus 16 TWaVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeKiKeEL---------MLLGFISLLLtv~q~~ 79 (567)
+|..|++++|+. +++=.++.+++..=. ++++.|-+-||+.|.|| =+--.-.||=+..++|
T Consensus 2 ~W~~a~i~livG---~iiG~~~~R~~~~~~-~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y 70 (134)
T PRK11677 2 TWEYALIGLVVG---IIIGAVAMRFGNRKL-RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDY 70 (134)
T ss_pred cHHHHHHHHHHH---HHHHHHHHhhccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 498888776653 333334444332211 35678999999999998 2344555666666555
No 3
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=54.99 E-value=30 Score=33.70 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 008391 51 ALFEAVEKVKAELMLLGFISLLLTVLQEPI 80 (567)
Q Consensus 51 aL~eALeKiKeELMLLGFISLLLtv~q~~I 80 (567)
+-.+.||++-.-++..||+.|.++..-+.+
T Consensus 116 p~l~~le~~~~~~~~~gf~~lti~l~~G~~ 145 (214)
T PF01578_consen 116 PSLETLERLSYRLILIGFILLTIGLITGAI 145 (214)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHccHHH
Confidence 346888999999999999999998877753
No 4
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=54.43 E-value=47 Score=26.70 Aligned_cols=47 Identities=13% Similarity=0.289 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHH
Q 008391 17 WAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAEL 63 (567)
Q Consensus 17 WaVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeKiKeEL 63 (567)
+-++++.++..++.+++=-++.....+=.|++.+.+-..+++.+.|+
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~~le~e~ 64 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELKKLEKEL 64 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666677777667776666666666778888899988886
No 5
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=53.47 E-value=26 Score=41.42 Aligned_cols=56 Identities=21% Similarity=0.412 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhhhccc-----hHHHHHHHHHHHHHHH------HHHHHHHHHh
Q 008391 20 AAVFFVLIAVSVVIEHLIHIIGKWLNNRHK-----KALFEAVEKVKAELML------LGFISLLLTV 75 (567)
Q Consensus 20 A~VC~V~V~ISl~iEr~LH~LgkwLkkk~k-----kaL~eALeKiKeELML------LGFISLLLtv 75 (567)
....++.++|.+.++.++|..-++.+.+++ .|+.||+.|+..=+++ +||+||+.+-
T Consensus 251 ~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~ 317 (727)
T COG1033 251 TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSS 317 (727)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcc
Confidence 344566778899999999999999887775 5888888887766654 7999998753
No 6
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=51.16 E-value=30 Score=30.81 Aligned_cols=46 Identities=20% Similarity=0.503 Sum_probs=34.5
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHH-------HhhHhhhccchHHHHHHHH
Q 008391 13 ETPTWAVAAVFFVLIAVSVVIEHLIHI-------IGKWLNNRHKKALFEAVEK 58 (567)
Q Consensus 13 ~TPTWaVA~VC~V~V~ISl~iEr~LH~-------LgkwLkkk~kkaL~eALeK 58 (567)
+|.-|...+++.+++++..++.+++-. +.+|+++++++.-++||++
T Consensus 13 e~sl~~~~~~l~~~~~~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~ 65 (108)
T PF07219_consen 13 ETSLWVALILLLLLFVVLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSR 65 (108)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888888765 5778888887777777654
No 7
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=34.25 E-value=1.4e+02 Score=30.19 Aligned_cols=29 Identities=17% Similarity=0.433 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008391 51 ALFEAVEKVKAELMLLGFISLLLTVLQEP 79 (567)
Q Consensus 51 aL~eALeKiKeELMLLGFISLLLtv~q~~ 79 (567)
+=.+.|||+--.+...||+-|.+++.-+.
T Consensus 142 p~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 142 PLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678999999999999999999988774
No 8
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.53 E-value=97 Score=29.79 Aligned_cols=60 Identities=32% Similarity=0.370 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcc
Q 008391 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELM---------LLGFISLLLTVLQEP 79 (567)
Q Consensus 16 TWaVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeKiKeELM---------LLGFISLLLtv~q~~ 79 (567)
+|..|.+-+| |.++|-.++-+|++-=- |+++.+..-|||+|.+|= .----+||=|..|+|
T Consensus 7 ~W~~a~igLv---vGi~IG~li~Rlt~~~~-k~q~~~q~ELe~~K~~ld~~rqel~~HFa~sAeLlktl~~dY 75 (138)
T COG3105 7 TWEYALIGLV---VGIIIGALIARLTNRKL-KQQQKLQYELEKVKAQLDEYRQELVKHFARSAELLKTLAQDY 75 (138)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHcchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888776544 34444444455554322 235578889999998763 223457888888887
No 9
>PF15468 DUF4636: Domain of unknown function (DUF4636)
Probab=26.34 E-value=19 Score=36.98 Aligned_cols=29 Identities=28% Similarity=0.693 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcccceeecchhHHHHHHHHHhh
Q 008391 270 QKYISRSLEEDFKDVVGITPILWFIATLFLLT 301 (567)
Q Consensus 270 hkYi~RsLEdDFk~VVGIS~~lW~fvvlFlLl 301 (567)
+.|=.| +||+-.++| +..||.||+|++|.
T Consensus 25 qdyEc~--KDdsc~~iG-~fLlWyfviilvLm 53 (243)
T PF15468_consen 25 QDYECR--KDDSCGAIG-SFLLWYFVIILVLM 53 (243)
T ss_pred cchhhc--cCCccchhh-hHHHHHHHHHHHHH
Confidence 455444 899888888 88999999988765
No 10
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=26.30 E-value=1.8e+02 Score=25.23 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHHHHHHHHH
Q 008391 18 AVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEKVKAELML 65 (567)
Q Consensus 18 aVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeKiKeELML 65 (567)
.+++++.+++++.-.+...-..=.+|.+.| .+.|++|.|.++
T Consensus 53 ~~~~~l~~~~~~~~~~~~~~~~~~~W~~~r------~tae~lk~e~~~ 94 (112)
T PF14015_consen 53 LVAAILSALAAILASLAAFFRFHERWIRYR------ATAESLKREKWL 94 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHH------HHHHHHHHHHHH
Confidence 344567777777777888877777887765 355666666653
No 11
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=26.19 E-value=1e+02 Score=33.03 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHH-------HHhhHhhhccc
Q 008391 13 ETPTWAVAAVFFVLIAVSVVIEHLIH-------IIGKWLNNRHK 49 (567)
Q Consensus 13 ~TPTWaVA~VC~V~V~ISl~iEr~LH-------~LgkwLkkk~k 49 (567)
+|+=|...++..+++++.+++++++. .+.+|+.++++
T Consensus 38 e~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~~~~r~~ 81 (409)
T TIGR00540 38 EMSITGLAIFFIIALAIIFAFEWGLRRFFRLGAHSRGWFSGRKR 81 (409)
T ss_pred EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 45556666666666666667889884 45668877654
No 12
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=26.06 E-value=1.1e+02 Score=34.21 Aligned_cols=48 Identities=21% Similarity=0.359 Sum_probs=35.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHh-------hHhhhcc----chHHHHHHHHHHH
Q 008391 14 TPTWAVAAVFFVLIAVSVVIEHLIHIIG-------KWLNNRH----KKALFEAVEKVKA 61 (567)
Q Consensus 14 TPTWaVA~VC~V~V~ISl~iEr~LH~Lg-------kwLkkk~----kkaL~eALeKiKe 61 (567)
+.-|.+++...+.++|-+++|.+++++. .|+..+| ++++.|+|.|+-|
T Consensus 39 ~Sl~~lv~~~ii~lvv~~~l~~~l~~v~~~~~~~~~w~~~rKrrra~~~~~egl~~l~e 97 (400)
T COG3071 39 MSLTTLVIFLIIALVVLYLLEWLLRRVLRTPAHTRGWFSRRKRRRARKALNEGLLKLFE 97 (400)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446777777777888899999999875 5887443 6788889888743
No 13
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=25.81 E-value=1.1e+02 Score=23.12 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=17.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Q 008391 16 TWAVAAVFFVLIAVSVVIEHLIHI 39 (567)
Q Consensus 16 TWaVA~VC~V~V~ISl~iEr~LH~ 39 (567)
.|...+...++++++++..|.-..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~r~~C~ 25 (48)
T PF12801_consen 2 AWFWLIGFIGFLLLSLFFGRAWCG 25 (48)
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHh
Confidence 455666666888899999886543
No 14
>TIGR03777 RPE4 Rickettsial palindromic element RPE4 domain. This model describes protein translations of a family, RPE4, of Rickettsia palindromic elements (RPE). The elements spread within a genome as selfish genetic elements, inserting into genes additional coding region that does not disrupt the reading frame. This model finds RPE-encoded regions in several Rickettsial species and, so far, no where else.
Probab=25.61 E-value=30 Score=25.70 Aligned_cols=9 Identities=67% Similarity=1.169 Sum_probs=6.6
Q ss_pred CceeccCCC
Q 008391 348 APVVQPGDD 356 (567)
Q Consensus 348 ~p~V~psD~ 356 (567)
+|+|||+||
T Consensus 24 D~VvKPR~D 32 (32)
T TIGR03777 24 DPVVKPRDD 32 (32)
T ss_pred ccccccCCC
Confidence 567888875
No 15
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.54 E-value=1.1e+02 Score=32.65 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=27.4
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHH-------HhhHhhhccc
Q 008391 13 ETPTWAVAAVFFVLIAVSVVIEHLIHI-------IGKWLNNRHK 49 (567)
Q Consensus 13 ~TPTWaVA~VC~V~V~ISl~iEr~LH~-------LgkwLkkk~k 49 (567)
+|+=|..++++.+++++.+++++++.. +..|+.+||+
T Consensus 38 e~sl~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~rr~ 81 (398)
T PRK10747 38 ETSVTGLAIILILAMVVLFAIEWLLRRIFRTGARTRGWFVGRKR 81 (398)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH
Confidence 566688778888887777788998854 4578877654
No 16
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.31 E-value=2.4e+02 Score=24.51 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=23.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhHh
Q 008391 16 TWAVAAVFFVLIAVSVVIEHLIHIIGKWL 44 (567)
Q Consensus 16 TWaVA~VC~V~V~ISl~iEr~LH~LgkwL 44 (567)
.|.+++-..+|+++-..++-.+||..||=
T Consensus 3 ~~fl~~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 3 IFFLAIPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 36778888888888888999999777653
No 17
>PHA03105 EEV glycoprotein; Provisional
Probab=23.01 E-value=87 Score=31.09 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhhccchH
Q 008391 19 VAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKA 51 (567)
Q Consensus 19 VA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kka 51 (567)
+.++|+.++++..++=-.-|.+-|+|+|+++|+
T Consensus 9 ~vv~~SfiiLi~Yll~i~K~~iKKflkkkk~K~ 41 (188)
T PHA03105 9 VVVPLSFIVLILYIFFICKNTIKKFLKKKKGKN 41 (188)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 456788888888888888899999999888754
No 18
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=21.97 E-value=1.7e+02 Score=28.81 Aligned_cols=45 Identities=29% Similarity=0.450 Sum_probs=29.1
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHHH
Q 008391 12 EETPTWAVAAVFFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVEK 58 (567)
Q Consensus 12 e~TPTWaVA~VC~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALeK 58 (567)
--+|..--.-.|++++.|-+++--++ .|--|+.+||||+. .|++|
T Consensus 21 ~~~psffsthm~tILiaIvVliiiii-vli~lcssRKkKaa-AAi~e 65 (189)
T PF05568_consen 21 VTPPSFFSTHMYTILIAIVVLIIIII-VLIYLCSSRKKKAA-AAIEE 65 (189)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHH-hhhhh
Confidence 34677776777777766655554333 34558888888887 66664
No 19
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=21.14 E-value=3.1e+02 Score=31.49 Aligned_cols=55 Identities=25% Similarity=0.449 Sum_probs=38.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhhhcc----chHHHHHHHHHHHHH------HHHHHHHHHH
Q 008391 19 VAAVFFVLIAVSVVIEHLIHIIGKWLNNRH----KKALFEAVEKVKAEL------MLLGFISLLL 73 (567)
Q Consensus 19 VA~VC~V~V~ISl~iEr~LH~LgkwLkkk~----kkaL~eALeKiKeEL------MLLGFISLLL 73 (567)
++.+....+++.+.++..+|.+.+|.++++ +.|+.+|+.+.=.=+ +.+||.+|++
T Consensus 621 ~~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~ 685 (719)
T TIGR00921 621 LAMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLL 685 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 345555667888999999999999987654 367777777665533 3456666655
Done!