Query 008391
Match_columns 567
No_of_seqs 171 out of 257
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 01:06:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008391.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008391hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf6c_ a.194.1.1 (C:) Maguk p 23.8 17 0.0012 26.3 1.8 18 364-381 29-46 (51)
2 d1q1ha_ a.4.5.41 (A:) Transcri 12.0 31 0.0023 27.5 0.9 8 305-312 74-81 (88)
3 d3b60a2 f.37.1.1 (A:10-328) Mu 10.3 1.9E+02 0.014 24.1 5.6 23 17-39 156-178 (319)
4 d1iwga8 f.35.1.1 (A:513-566,A: 8.9 1.8E+02 0.013 25.2 5.2 56 19-74 111-178 (222)
5 d1xrda1 f.3.1.1 (A:1-52) Light 8.2 79 0.0058 23.0 1.8 12 155-166 16-27 (52)
6 d2pila_ d.24.1.1 (A:) Pilin Gc 8.2 2.4E+02 0.018 21.2 5.2 35 23-57 7-41 (158)
7 d1zkea1 a.30.6.1 (A:1-79) Hypo 7.7 60 0.0044 25.2 1.0 15 50-64 63-77 (79)
8 d1ug0a_ a.217.1.1 (A:) Splicin 7.2 74 0.0054 24.7 1.4 54 325-391 25-80 (88)
9 d1j1va_ a.4.12.2 (A:) Chromoso 7.1 1.5E+02 0.011 22.6 3.3 30 34-63 46-75 (94)
10 d2axtl1 f.23.31.1 (L:1-37) Pho 7.0 1.2E+02 0.009 20.3 2.2 13 158-170 22-34 (37)
No 1
>d1vf6c_ a.194.1.1 (C:) Maguk p55 subfamily member 5, Patj {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.78 E-value=17 Score=26.31 Aligned_cols=18 Identities=39% Similarity=0.602 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHhhhhhH
Q 008391 364 RFILFLIHLVLFQNAFQL 381 (567)
Q Consensus 364 ~llL~LIHfiLFQNAFel 381 (567)
.++|-|.|=.=|||||-|
T Consensus 29 ~l~lqLvqn~DFQnAfkI 46 (51)
T d1vf6c_ 29 SLLLQLVQNRDFQNAFKI 46 (51)
T ss_dssp HHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHH
Confidence 689999999999999986
No 2
>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=12.01 E-value=31 Score=27.54 Aligned_cols=8 Identities=63% Similarity=1.950 Sum_probs=6.2
Q ss_pred cceeeeec
Q 008391 305 GWFAYLWL 312 (567)
Q Consensus 305 Gw~~yfWl 312 (567)
||++|+|-
T Consensus 74 gw~~Y~W~ 81 (88)
T d1q1ha_ 74 GWFIYYWK 81 (88)
T ss_dssp CCCEEEEE
T ss_pred CcEEEEEE
Confidence 78888884
No 3
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=10.30 E-value=1.9e+02 Score=24.08 Aligned_cols=23 Identities=13% Similarity=0.466 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 008391 17 WAVAAVFFVLIAVSVVIEHLIHI 39 (567)
Q Consensus 17 WaVA~VC~V~V~ISl~iEr~LH~ 39 (567)
|.++.++.+++.+.+++-....+
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~ 178 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSK 178 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhh
Confidence 66777777777777766554443
No 4
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.94 E-value=1.8e+02 Score=25.18 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHhh--hccchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 008391 19 VAAVFFVLIAVSVVIEHLIHIIGKWLN--NRHKKALFEAVEKVKAEL----------MLLGFISLLLT 74 (567)
Q Consensus 19 VA~VC~V~V~ISl~iEr~LH~LgkwLk--kk~kkaL~eALeKiKeEL----------MLLGFISLLLt 74 (567)
+.+....++++.+.+..++|.+..+.+ +++.+...||..+.-+|- +++||++|++.
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 445566777899999999999998865 333344444444333332 37889888875
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=8.24 E-value=79 Score=22.95 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHH
Q 008391 155 QLHIFIFVLAVF 166 (567)
Q Consensus 155 QLHIFIFVLAV~ 166 (567)
-++.|.|+||+.
T Consensus 16 a~~~fL~~LAl~ 27 (52)
T d1xrda1 16 GLATFLFVLALL 27 (52)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 468999999964
No 6
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=8.16 E-value=2.4e+02 Score=21.20 Aligned_cols=35 Identities=9% Similarity=0.125 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhccchHHHHHHH
Q 008391 23 FFVLIAVSVVIEHLIHIIGKWLNNRHKKALFEAVE 57 (567)
Q Consensus 23 C~V~V~ISl~iEr~LH~LgkwLkkk~kkaL~eALe 57 (567)
..|+++|.|+.==++=.+.++.++.+.+.....+.
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~ 41 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAE 41 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555556666677777766544443333
No 7
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=7.72 E-value=60 Score=25.21 Aligned_cols=15 Identities=40% Similarity=0.651 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHH
Q 008391 50 KALFEAVEKVKAELM 64 (567)
Q Consensus 50 kaL~eALeKiKeELM 64 (567)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 568899999999874
No 8
>d1ug0a_ a.217.1.1 (A:) Splicing factor 4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.16 E-value=74 Score=24.69 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHhhcCCcccCCcee-ccCCCccccCC-chHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q 008391 325 AKLQVIITKLGLRIQERGDVVKGAPVV-QPGDDLFWFGR-PRFILFLIHLVLFQNAFQLAFFSWSTYEF 391 (567)
Q Consensus 325 tKLq~IIt~malei~e~~~~v~G~p~V-~psD~lFWF~r-P~llL~LIHfiLFQNAFelAfF~W~~~~f 391 (567)
.++..||-++|.=|++.+...+-...- +.+|..|||=+ | +.=.=+|+-|-+++|
T Consensus 25 ~~~~~iI~~tA~~Vak~G~~fE~~l~~k~~~np~F~FL~d~-------------~~~~~~YY~~kl~e~ 80 (88)
T d1ug0a_ 25 AETRRVIEKLARFVAEGGPELEKVAMEDYKDNPAFTFLHDK-------------NSREFLYYRRKVAEI 80 (88)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHTTTCSSSHHHHCS-------------SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHhccCCCCceeeCCC-------------CCCCcHHHHHHHHHH
Confidence 468899999999888876554433222 45788899842 3 333336666766665
No 9
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=7.10 E-value=1.5e+02 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=23.6
Q ss_pred HHHHHHHhhHhhhccchHHHHHHHHHHHHH
Q 008391 34 EHLIHIIGKWLNNRHKKALFEAVEKVKAEL 63 (567)
Q Consensus 34 Er~LH~LgkwLkkk~kkaL~eALeKiKeEL 63 (567)
...+-.+|+.|..|+-.+...|+.|+++++
T Consensus 46 ~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 46 NHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp CCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 446778999997666688999999998754
No 10
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.99 E-value=1.2e+02 Score=20.34 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 008391 158 IFIFVLAVFHVLY 170 (567)
Q Consensus 158 IFIFVLAV~HV~Y 170 (567)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7899999876655
Done!