Query 008392
Match_columns 567
No_of_seqs 162 out of 798
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 01:07:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/008392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 97.2 0.0059 2E-07 62.4 15.0 248 154-420 97-361 (444)
2 4djk_A Probable glutamate/gamm 97.0 0.033 1.1E-06 57.9 18.5 101 181-288 130-240 (511)
3 3l1l_A Arginine/agmatine antip 96.5 0.042 1.4E-06 55.9 14.8 106 157-271 100-211 (445)
4 3kcp_B Cellulosome anchoring p 23.5 21 0.00073 34.2 0.7 14 227-240 55-68 (187)
5 2bm3_A Type 2 cohesin, scaffol 23.1 22 0.00076 33.6 0.7 14 227-240 43-56 (166)
6 3bwz_A Cellulosomal scaffoldin 19.5 29 0.001 33.1 0.7 13 227-239 41-53 (181)
7 1nrp_R Receptor based peptide 19.1 34 0.0012 22.8 0.7 17 302-318 4-20 (26)
8 3bkd_A Transmembrane domain of 16.8 72 0.0025 21.5 1.9 15 44-58 8-22 (26)
9 3lbw_A M2 protein; proton chan 16.6 75 0.0026 20.9 1.9 15 44-58 5-19 (23)
10 3ghp_A Cellulosomal scaffoldin 15.1 43 0.0015 33.0 0.7 14 227-240 46-59 (227)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=97.18 E-value=0.0059 Score=62.36 Aligned_cols=248 Identities=12% Similarity=0.043 Sum_probs=111.2
Q ss_pred ccccchhhhhhhhccccccccCCCCc-eEeehHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHHHhHhhccC
Q 008392 154 GILTPAMSVLSAINGIKVKATGLDEN-YTVLIASLMLVGLFALQHFGTHRVGFL---FAPVLLAWLLCISIVGFYNTVRW 229 (567)
Q Consensus 154 GviTPAISVLSAVeGL~v~~p~l~~~-~Vv~Is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~iGiynI~~~ 229 (567)
-+++.|....+..+=++...|..++. +...+++++++.+..+..+|.+..++. +.++.++=++.+.+.|+.+.
T Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~--- 173 (444)
T 3gia_A 97 YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI--- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34556666655555554433433321 233567888888889999998877664 44444444444445555543
Q ss_pred Ccceeee-cCHHHHHHHHHhcCccc-hhhhcchhhhccchhhhhccCCCCC--CcceeehhhHhHHHHHHHhhccchhhh
Q 008392 230 NPGVVRA-LSPYYVYIFFKKAGKDG-WSSLGGVVLCVTGAEAMFADLGHFS--HLPIRIAFATVVYPCLILAYMGEAAFY 305 (567)
Q Consensus 230 ~P~Vl~A-lnP~Ya~~ff~~~g~~g-~~~LG~VvL~iTGaEALyADmGHFg--~~~Ir~aw~~~V~P~L~LnY~GQgA~L 305 (567)
+|+-+.. ++|. +..+ +..+...+.+.+|-|+.-.=-+... +|.+..+-..-+.-+.++.-...-+..
T Consensus 174 ~~~~~~~~~~~~---------g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~ 244 (444)
T 3gia_A 174 HPSYVIPDLAPS---------AVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAI 244 (444)
T ss_dssp CGGGTSCCCSHH---------HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCCCCCCc---------chHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443322 3332 1112 2334445688899997633222222 233444433211111111111111111
Q ss_pred cccc-cc----ccccccc----cccccchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHcCCCCceeEEecCCccCCcc
Q 008392 306 TKHK-ED----LERSFFK----AIPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPRVKIMHTSNQIHGQI 376 (567)
Q Consensus 306 l~~p-~~----~~npFf~----~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPR~kI~hTS~~~~GQI 376 (567)
..-| ++ .++|+-. ..+++..+-+.+.+.++..-+.-+.+.+.=-+....-+.|.+||. =+++.++.
T Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~----f~~~~~~~- 319 (444)
T 3gia_A 245 GNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEF----FERKVWFK- 319 (444)
T ss_dssp TTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSS----CCTTSCCS-
T ss_pred hCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH----HhCCCCCC-
Confidence 1111 11 1233321 122333322222222333222333333433345555678999963 12222222
Q ss_pred cchhhHHHHHHHhheeEEEecCchhHHhhhhhHHHHHHHHHHHH
Q 008392 377 YIPEMNWILMIFCLGVVVGFRDTDMIANAYGLAVITVMFVTTCL 420 (567)
Q Consensus 377 YIP~VNwlLmi~~i~vvl~F~~S~~L~~AYGiAV~~~M~iTT~L 420 (567)
|...-++......+...+-+-+.+.+.+.++...+..++.+-
T Consensus 320 --P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 361 (444)
T 3gia_A 320 --STEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILS 361 (444)
T ss_dssp --CTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 553322222212222223466778888777776666555443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.97 E-value=0.033 Score=57.91 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=56.1
Q ss_pred EeehHHHHHHHHHHHhhhcccccccchhhH----HHHHHHHHHHHHhHhhccCCccee----eecCHHHHHHHHHhcCcc
Q 008392 181 TVLIASLMLVGLFALQHFGTHRVGFLFAPV----LLAWLLCISIVGFYNTVRWNPGVV----RALSPYYVYIFFKKAGKD 252 (567)
Q Consensus 181 Vv~Is~~ILv~LF~iQ~~GT~kvg~~FgPI----m~vWF~~i~~iGiynI~~~~P~Vl----~AlnP~Ya~~ff~~~g~~ 252 (567)
...+++++++.+..+.-+|.+..+++..-. +++-++.+.++|++.+.+.+|.-. ..+.|.. .+..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 202 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF-------SKVG 202 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT-------TSTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc-------ccch
Confidence 455778888888999999998877754332 222344455667766654333211 1112210 1124
Q ss_pred chhhhcchhhhccchhhhhccCCCC--CCcceeehhhH
Q 008392 253 GWSSLGGVVLCVTGAEAMFADLGHF--SHLPIRIAFAT 288 (567)
Q Consensus 253 g~~~LG~VvL~iTGaEALyADmGHF--g~~~Ir~aw~~ 288 (567)
.|..+..++.+.+|-|+.-.=-+-. .+|.+..+-..
T Consensus 203 ~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 203 TLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 5667778899999999864433333 24555555443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=96.50 E-value=0.042 Score=55.94 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=51.6
Q ss_pred cchhhhhhhhccccccccCCCCce-EeehHHHHHHHHHHHhhhcccccccc---hhhHHHHHHHHHHHHHhHhhccCCcc
Q 008392 157 TPAMSVLSAINGIKVKATGLDENY-TVLIASLMLVGLFALQHFGTHRVGFL---FAPVLLAWLLCISIVGFYNTVRWNPG 232 (567)
Q Consensus 157 TPAISVLSAVeGL~v~~p~l~~~~-Vv~Is~~ILv~LF~iQ~~GT~kvg~~---FgPIm~vWF~~i~~iGiynI~~~~P~ 232 (567)
+.+....+..+=++...|..++++ ...+++++++.+..+..+|.+..++. +.++.++=++.+.+.| +.+.+|+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~ 176 (445)
T 3l1l_A 100 GNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGE 176 (445)
T ss_dssp HHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCC
T ss_pred HHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChh
Confidence 334444444454444445443321 23467777777888888998877775 3443333233333333 3333555
Q ss_pred ee-eecCHHHHHHHHHhcCccc-hhhhcchhhhccchhhhh
Q 008392 233 VV-RALSPYYVYIFFKKAGKDG-WSSLGGVVLCVTGAEAMF 271 (567)
Q Consensus 233 Vl-~AlnP~Ya~~ff~~~g~~g-~~~LG~VvL~iTGaEALy 271 (567)
.+ ..++|.-. .+..+ +..+..++.+.+|-|+.-
T Consensus 177 ~~~~~~~~~~~------~~~~~~~~~~~~~~~af~G~e~~~ 211 (445)
T 3l1l_A 177 TYMAAWNVSGL------GTFGAIQSTLNVTLWSFIGVESAS 211 (445)
T ss_dssp CCCCC-----------------HHHHHHHHHHTTTTTTHHH
T ss_pred hcccccCccCC------ccHHHHHHHHHHHHHHHHhHHHHH
Confidence 43 34444311 01112 334555677889999753
No 4
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=23.51 E-value=21 Score=34.15 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.5
Q ss_pred ccCCcceeeecCHH
Q 008392 227 VRWNPGVVRALSPY 240 (567)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (567)
++|||+||+|+||.
T Consensus 55 IKYDP~VLqaV~p~ 68 (187)
T 3kcp_B 55 IVYDPKVLMAVDPE 68 (187)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeEChhHeeecccC
Confidence 46899999999996
No 5
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=23.06 E-value=22 Score=33.58 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.2
Q ss_pred ccCCcceeeecCHH
Q 008392 227 VRWNPGVVRALSPY 240 (567)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (567)
++|||+||+|.||-
T Consensus 43 IKYDP~VLqaVn~~ 56 (166)
T 2bm3_A 43 IVYDPKVLMAVDPE 56 (166)
T ss_dssp EECCTTTEEEECTT
T ss_pred EEECccceEeecCC
Confidence 46899999999993
No 6
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=19.45 E-value=29 Score=33.13 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=11.9
Q ss_pred ccCCcceeeecCH
Q 008392 227 VRWNPGVVRALSP 239 (567)
Q Consensus 227 ~~~~P~Vl~AlnP 239 (567)
++|||+||+|.||
T Consensus 41 IKYDP~VLQaV~~ 53 (181)
T 3bwz_A 41 MKYDPAVLQPVTS 53 (181)
T ss_dssp EECCTTTEEEECT
T ss_pred cccChhHeeeecC
Confidence 4689999999999
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=19.07 E-value=34 Score=22.78 Aligned_cols=17 Identities=18% Similarity=0.450 Sum_probs=14.5
Q ss_pred hhhhccccccccccccc
Q 008392 302 AAFYTKHKEDLERSFFK 318 (567)
Q Consensus 302 gA~Ll~~p~~~~npFf~ 318 (567)
-++|++||++.-.|||.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 8
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=16.75 E-value=72 Score=21.52 Aligned_cols=15 Identities=33% Similarity=0.990 Sum_probs=13.3
Q ss_pred chhhhhhHHHHHHHH
Q 008392 44 DDEILGVFSLVFWTL 58 (567)
Q Consensus 44 ~~~ilGvlSLIfWtL 58 (567)
..+|+|++-||.|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 478999999999976
No 9
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=16.60 E-value=75 Score=20.94 Aligned_cols=15 Identities=27% Similarity=0.855 Sum_probs=13.2
Q ss_pred chhhhhhHHHHHHHH
Q 008392 44 DDEILGVFSLVFWTL 58 (567)
Q Consensus 44 ~~~ilGvlSLIfWtL 58 (567)
..+|+|++-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 468999999999976
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=15.13 E-value=43 Score=32.98 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=12.3
Q ss_pred ccCCcceeeecCHH
Q 008392 227 VRWNPGVVRALSPY 240 (567)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (567)
++|||+||+|.||.
T Consensus 46 IKYDP~vLQaVnp~ 59 (227)
T 3ghp_A 46 IKYDPTVLQAVNPK 59 (227)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeChhheecccCC
Confidence 46899999999994
Done!