Query 008392
Match_columns 567
No_of_seqs 162 out of 798
Neff 4.2
Searched_HMMs 13730
Date Tue Mar 26 01:07:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008392.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/008392hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 19.8 13 0.00098 32.7 0.7 14 227-240 39-52 (162)
2 d2h8pc1 f.14.1.1 (C:22-78) Pot 18.4 18 0.0013 26.7 1.0 40 292-333 15-54 (57)
3 d1tyja1 b.2.2.2 (A:2-171) Cell 15.5 16 0.0012 32.4 0.2 14 227-240 37-50 (170)
4 d1zv9a1 b.2.2.2 (A:3-173) Cell 13.6 24 0.0017 31.3 0.7 13 227-239 39-51 (171)
5 d2e74h1 f.23.27.1 (H:3-29) Pet 11.1 74 0.0054 19.9 2.3 20 462-481 5-24 (27)
6 d2yvxa3 f.57.1.1 (A:276-448) M 10.2 74 0.0054 27.6 2.9 119 292-423 12-132 (173)
7 d2a65a1 f.54.1.1 (A:5-513) Na( 6.6 4.3E+02 0.031 25.3 7.2 51 438-489 378-431 (509)
8 d1krha2 c.25.1.2 (A:206-338) B 5.8 1.8E+02 0.013 22.5 3.2 40 344-383 17-56 (133)
9 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.8 64 0.0047 24.0 0.2 16 73-88 37-52 (71)
10 d2j5pa1 a.4.5.67 (A:1261-1329) 4.7 1.2E+02 0.0084 22.9 1.1 10 86-95 25-34 (69)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=19.81 E-value=13 Score=32.74 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=12.5
Q ss_pred ccCCcceeeecCHH
Q 008392 227 VRWNPGVVRALSPY 240 (567)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (567)
++|||+||+|.||.
T Consensus 39 IKYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 39 IVYDPKVLMAVDPE 52 (162)
T ss_dssp EECCTTTEEEECTT
T ss_pred eeeCHHHhcccccC
Confidence 46899999999996
No 2
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=18.38 E-value=18 Score=26.68 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHhhccchhhhccccccccccccccccccchHHHHHHHH
Q 008392 292 PCLILAYMGEAAFYTKHKEDLERSFFKAIPEAVFWPVFIIAT 333 (567)
Q Consensus 292 P~L~LnY~GQgA~Ll~~p~~~~npFf~~iP~~~~~P~~vlAt 333 (567)
-++++--++=+.|+.++++. |.-|.++|+.++|-.+-+.|
T Consensus 15 ~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 15 LVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 34444445666677766443 33479999999997765543
No 3
>d1tyja1 b.2.2.2 (A:2-171) Cellulosomal scaffoldin ScaA {Bacteroides cellulosolvens [TaxId: 35825]}
Probab=15.52 E-value=16 Score=32.37 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=12.5
Q ss_pred ccCCcceeeecCHH
Q 008392 227 VRWNPGVVRALSPY 240 (567)
Q Consensus 227 ~~~~P~Vl~AlnP~ 240 (567)
++|||+||+|.||.
T Consensus 37 IKYDP~vLQ~V~p~ 50 (170)
T d1tyja1 37 IKYNTTYLQPWDTI 50 (170)
T ss_dssp EECCTTTEEEEETT
T ss_pred eeeChHHeecccCC
Confidence 46899999999996
No 4
>d1zv9a1 b.2.2.2 (A:3-173) Cellulosomal scaffoldin adaptor protein B, ScaB {Acetivibrio cellulolyticus [TaxId: 35830]}
Probab=13.56 E-value=24 Score=31.31 Aligned_cols=13 Identities=15% Similarity=0.754 Sum_probs=11.7
Q ss_pred ccCCcceeeecCH
Q 008392 227 VRWNPGVVRALSP 239 (567)
Q Consensus 227 ~~~~P~Vl~AlnP 239 (567)
++|||+||+|.||
T Consensus 39 IKYDP~vLQ~V~~ 51 (171)
T d1zv9a1 39 MKYDPAVLQPVTS 51 (171)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChHHeeccCC
Confidence 4689999999998
No 5
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.11 E-value=74 Score=19.85 Aligned_cols=20 Identities=25% Similarity=0.674 Sum_probs=14.7
Q ss_pred ccHHHHHHHHHHHHHHHhhh
Q 008392 462 GWLPLVFSLVTLSIMCIWQY 481 (567)
Q Consensus 462 GW~pL~ia~v~~~iM~tW~~ 481 (567)
||+.++.-..-.+-|.+|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888777666677777754
No 6
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=10.16 E-value=74 Score=27.64 Aligned_cols=119 Identities=11% Similarity=0.119 Sum_probs=68.7
Q ss_pred HHHHHhhccc--hhhhccccccccccccccccccchHHHHHHHHHHHHHhhhhhhhchhhHHHHHHHcCCCCceeEEecC
Q 008392 292 PCLILAYMGE--AAFYTKHKEDLERSFFKAIPEAVFWPVFIIATLATAVASQAIISATFSIISQCRALSCFPRVKIMHTS 369 (567)
Q Consensus 292 P~L~LnY~GQ--gA~Ll~~p~~~~npFf~~iP~~~~~P~~vlAtlAtIIASQA~ISg~FSii~Qai~Lg~fPR~kI~hTS 369 (567)
|-|++|.+|+ .|+++++=|+.-+-+ +-=..+.|+ ++-.+.-.+||+. +++-|++++|..-+-+ .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~---~~La~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAV---TALAFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTT---TSCCCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchh---HH
Confidence 4466666665 456665544322221 112245665 5667888899986 4778999999643211 11
Q ss_pred CccCCcccchhhHHHHHHHhheeEEEecCchhHHhhhhhHHHHHHHHHHHHHHH
Q 008392 370 NQIHGQIYIPEMNWILMIFCLGVVVGFRDTDMIANAYGLAVITVMFVTTCLMFL 423 (567)
Q Consensus 370 ~~~~GQIYIP~VNwlLmi~~i~vvl~F~~S~~L~~AYGiAV~~~M~iTT~L~~~ 423 (567)
+....+..+-.+|=..+...+.....+++...++-+=|++...++.+.++.=..
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123345677777766665555554555666666666666666666666555443
No 7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.57 E-value=4.3e+02 Score=25.26 Aligned_cols=51 Identities=24% Similarity=0.282 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc---CccHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 008392 438 AFVVVFGSLELLYLSACLAKVHK---GGWLPLVFSLVTLSIMCIWQYGTLKKHSY 489 (567)
Q Consensus 438 ~f~~~F~~ie~~ffsanl~K~~~---GGW~pL~ia~v~~~iM~tW~~G~~~~~~~ 489 (567)
..++.++..-..+++.+.....| ++ +.+.+.+.+-++...|.||.++..+.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 378 TAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred eeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 33344444444444444333322 34 46666778888999999998876554
No 8
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.84 E-value=1.8e+02 Score=22.48 Aligned_cols=40 Identities=10% Similarity=0.117 Sum_probs=31.9
Q ss_pred hhchhhHHHHHHHcCCCCceeEEecCCccCCcccchhhHH
Q 008392 344 ISATFSIISQCRALSCFPRVKIMHTSNQIHGQIYIPEMNW 383 (567)
Q Consensus 344 ISg~FSii~Qai~Lg~fPR~kI~hTS~~~~GQIYIP~VNw 383 (567)
||-..|+++++.+.+.-+++++.|..++..--+|-.++..
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~ 56 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDA 56 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHH
Confidence 5567888999999998888999999998776667666543
No 9
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.78 E-value=64 Score=23.98 Aligned_cols=16 Identities=44% Similarity=0.632 Sum_probs=13.0
Q ss_pred ecCCCCchHHHHHHHH
Q 008392 73 ADDNGEGGTFALYSIL 88 (567)
Q Consensus 73 Adn~GEGGifALysLl 88 (567)
|=.|||||-+.|..|=
T Consensus 37 awengeggeltltqlg 52 (71)
T d2bnma1 37 AWENGEGGELTLTQLG 52 (71)
T ss_dssp HHHTTTCTTCBHHHHH
T ss_pred HhhcCCCceeeHHHHH
Confidence 3479999999998763
No 10
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=4.75 E-value=1.2e+02 Score=22.95 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=6.1
Q ss_pred HHHhhhcccc
Q 008392 86 SILCRRAKVG 95 (567)
Q Consensus 86 sLl~r~~k~~ 95 (567)
|+++|+.|++
T Consensus 25 S~lQR~l~IG 34 (69)
T d2j5pa1 25 SGVQRQFRIG 34 (69)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHHHhcc
Confidence 5666666653
Done!