BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 008393
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 87/294 (29%), Positives = 148/294 (50%), Gaps = 14/294 (4%)
Query: 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 336
KE N + A +S V FS DG+ +A+ DK LW+ + +T L HSS + V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVA 64
Query: 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396
FSP +A++S DKTV++W+ + G L+T GHS+SV + F P+ + + D D
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKT 121
Query: 397 IRYWSINNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH 453
++ W+ NG + G ++ + F P G+ +A+A+++ L +L GH
Sbjct: 122 VKLWN-RNGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGH 179
Query: 454 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512
+ + V + P G+ +AS S+D +V++W G+ + L+ + + F P +
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQT 235
Query: 513 LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+ ++++LWN + TLT H + +A + +ASAS DK VKLW
Sbjct: 236 IASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/284 (29%), Positives = 145/284 (51%), Gaps = 14/284 (4%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVRGVAFSPDGQTIAS 115
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 116 ASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN-RNGQ 171
Query: 407 CTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463
+ G ++ + F P G+ +A+A+++ L +L GH+ + V +
Sbjct: 172 LLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFS 230
Query: 464 PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522
P G+ +AS S+D +V++W G+ + L+ + + + F P ++ +++
Sbjct: 231 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 523 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+LWN + TLT H + +A S + +ASAS DK VKLW
Sbjct: 287 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 14/284 (4%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQT-LTGHSSSVWGVAFSPDGQTIAS 361
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 362 ASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASD-DKTVKLWN-RNGQ 417
Query: 407 CTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463
+ G ++ + F P +A+ + V + + Q + +L GH+ + V +
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFS 476
Query: 464 PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522
P G+ +AS S+D +V++W G+ + L+ + + F P ++ +++
Sbjct: 477 PDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 532
Query: 523 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+LWN + TLT H + +A S + +ASAS DK VKLW
Sbjct: 533 KLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 14/284 (4%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
+S V F DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIAS 320
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKTV++W+ + G L+T GHS+SV + F P+ + + D D ++ W+ NG
Sbjct: 321 ASDDKTVKLWNRN--GQHLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLWN-RNGQ 376
Query: 407 CTRVFKGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463
+ G ++ +R F P G+ +A+A+++ L +L GH+ + V +
Sbjct: 377 LLQTLTGHSSSVRGVAFSPD-GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFS 435
Query: 464 PSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522
P + +AS S+D +V++W G+ + L+ + + F P ++ +++
Sbjct: 436 PDDQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV 491
Query: 523 ELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+LWN + TLT H + +A S + +ASAS DK VKLW
Sbjct: 492 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
+S V FS DG+ +A+ DK LW+ + +T L HSS + V FSP +A+
Sbjct: 508 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQT-LTGHSSSVWGVAFSPDGQTIAS 566
Query: 347 SSFDKTVRVWD 357
+S DKTV++W+
Sbjct: 567 ASSDKTVKLWN 577
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 196
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 255
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 256 KWIVSGSEDNLVYIW 270
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 196
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 255
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 256 KWIVSGSEDNLVYIW 270
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 519 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 80
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 81 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 140 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 196
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 197 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 255
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 256 KWIVSGSEDNLVYIW 270
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 29 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 89 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 99 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 155
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 156 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 213
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 214 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 274 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 20 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 79
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 138
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 139 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 182
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 98
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 99 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 158 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 214
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 215 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 273
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 274 KWIVSGSEDNLVYIW 288
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 47 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 107 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 519 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 117 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 173
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 174 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 231
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 232 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 292 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 38 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 156
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 157 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 200
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 91
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 92 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 151 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 207
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 208 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 266
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 267 KWIVSGSEDNLVYIW 281
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 40 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 100 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 110 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 166
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 167 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 224
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 225 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 285 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 31 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 90
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 149
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 150 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 193
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 79
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 80 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 139 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 195
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 196 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 254
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 255 KWIVSGSEDNLVYIW 269
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 28 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 88 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 98 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 154
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 155 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 212
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 213 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 273 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 19 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 78
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 137
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 138 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 181
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 75
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 76 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 135 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 191
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 192 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 250
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 251 KWIVSGSEDNLVYIW 265
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 24 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 84 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 202 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 257
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 94 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 150
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 151 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 208
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 209 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 269 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 15 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 74
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 133
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 134 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 177
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 73
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 74 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 133 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 189
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 190 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 248
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 249 KWIVSGSEDNLVYIW 263
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 22 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 82 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 200 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 255
Query: 519 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 92 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 148
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 149 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 206
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 207 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 267 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 13 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 72
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 131
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 132 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 75 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 190
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 249
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 250 KWIVSGSEDNLVYIW 264
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 83 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 93 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 207
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 132
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 96
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 97 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 156 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 212
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 271
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 272 KWIVSGSEDNLVYIW 286
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 105 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 115 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 171
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 172 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 229
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 230 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 290 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 36 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 154
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 198
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 70
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 71 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 130 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 186
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 187 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 245
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 246 KWIVSGSEDNLVYIW 260
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 79 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 252
Query: 519 YQSL-ELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 89 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 145
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 146 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 203
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 204 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 264 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 10 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 69
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 128
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 129 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 172
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/255 (27%), Positives = 126/255 (49%), Gaps = 16/255 (6%)
Query: 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381
K L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWS 74
Query: 382 PNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSI 438
+ + L+ + D D ++ W +++G C + KG + + F P ++ + + V I
Sbjct: 75 SDSNLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCN 497
D +T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L +
Sbjct: 134 WDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDD 190
Query: 498 GNKFHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTET 551
N S V F P +L +L+LW+ S+ K + T T H+ + A +V T
Sbjct: 191 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGG 249
Query: 552 GYVASASHDKFVKLW 566
++ S S D V +W
Sbjct: 250 KWIVSGSEDNLVYIW 264
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 83 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
+L +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T K L HS
Sbjct: 93 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS 149
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 207
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 208 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 268 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A + +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 73
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 132
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ K + TL AH ++A+ + + + S+S+D ++W
Sbjct: 133 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 176
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 125/252 (49%), Gaps = 16/252 (6%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDS 80
Query: 385 DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDA 441
+ L+ + D D ++ W +++G C + KG + + F P ++ + + V I D
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCNGNK 500
+T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L + N
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 196
Query: 501 FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTETGYV 554
S V F P +L +L+LW+ S+ K + T T H+ + A +V T ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 555 ASASHDKFVKLW 566
S S D V +W
Sbjct: 256 VSGSEDNMVYIW 267
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 142/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++++++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
++ +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D ++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 211 LAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 135
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ + TL AH ++A+ + + + S+S+D ++W
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 124/252 (49%), Gaps = 16/252 (6%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
L H+ ++ V+FSP+ LA+SS DK +++W A + + +T GH + + + +
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSDS 80
Query: 385 DDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDA 441
+ L+ + D D ++ W +++G C + KG + + F P ++ + + V I D
Sbjct: 81 NLLVSASD-DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDV 139
Query: 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSCNGNK 500
+T C +L H+ P+ +V ++ G L+ S S D + R+W S G+C+ L + N
Sbjct: 140 KTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS---GQCLKTLIDDDNP 196
Query: 501 FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG----LIAALAVSTETGYV 554
S V F P +L L+LW+ S+ K + T T H+ + A +V T ++
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV-TGGKWI 255
Query: 555 ASASHDKFVKLW 566
S S D V +W
Sbjct: 256 VSGSEDNMVYIW 267
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V FS +G+ LA+ DK +W K + + H I+DV +S L +
Sbjct: 26 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
+S DKT+++WD + G L+T GHS V +F+P + +LI S D +R W + G
Sbjct: 86 ASDDKTLKIWDVSS-GKCLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 407 CTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPIDSVCW 462
C + + + + F ++++ + + I D + C +L P+ V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 463 DPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGC 518
P+G+ +LA+ ++ +++W S+G+C+ + + N+ + C+ F T +V G
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 519 YQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASAS--HDKFVKLWK 567
++ +WN+ + + L H ++ + A +ASA+ +DK +KLWK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 105/221 (47%), Gaps = 15/221 (6%)
Query: 270 DVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS 329
DVS G K +++ ++ V CC+F+ L+ +G D+ +W T L HS
Sbjct: 96 DVSSGKCLK---TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS 152
Query: 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLI 388
++ V F+ + +SS+D R+WD + G L+T + + V + F PN I
Sbjct: 153 DPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQCLKTLIDDDNPPVSFVKFSPN-GKYI 210
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRFQPHLGRYLAAAAE-NVVSILDAE 442
+ D +++ W + G C + + G + F G+++ + +E N+V I + +
Sbjct: 211 LAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270
Query: 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVS---EDSVRVW 480
T+ LQGHT + S P+ ++AS + + ++++W
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 43/164 (26%)
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSG------------------ 485
A +L GHTK + SV + P+GE LAS S D +++W G
Sbjct: 17 ALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 486 ---------------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLE 523
S G+C+ L + N C F+P +L+V G + +S+
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVR 135
Query: 524 LWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+W++ + TL AH ++A+ + + + S+S+D ++W
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/289 (25%), Positives = 125/289 (43%), Gaps = 26/289 (8%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
+++ T V F GKLLA+ D LW + + H ++ V P+
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRY 399
+ ++S DKT+++W+ GY ++TF GH V + PN+D LI SC D +R
Sbjct: 204 GDHIVSASRDKTIKMWEVQT-GYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 260
Query: 400 WSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDS 459
W + C A++R H+ ++ A E+ S + +E G P
Sbjct: 261 WVVATKEC-------KAELREHRHVVECISWAPESSYSSI-SEATGSETKKSGKPGPF-- 310
Query: 460 VCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519
LL+ + ++++W V S G C+ L + N +FH +L
Sbjct: 311 --------LLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 520 QSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
++L +W+ + M TL AHE + +L YV + S D+ VK+W+
Sbjct: 360 KTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR 478
F P ++A+ + + + D ET +L+GHT + + +D SG+LLAS S D +++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA 537
+W EC+ + + + S P ++ +++++W + + T T
Sbjct: 176 LWDFQG---FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG 232
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLW 566
H + + + + +AS S+D+ V++W
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 150/317 (47%), Gaps = 23/317 (7%)
Query: 268 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 322
G + +G F + N ++ T V FS +G+ LA DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE 61
Query: 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 382
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 439
+ +LI S D +R W + G C + + + + F ++++ + + I
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 440 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 497
D + C +L P+ V + P+G+ +LA+ ++++++W S+G+C+ + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 498 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETG 552
N+ + C+ F T +V G +L +WN+ + + L H ++ + A
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 553 YVASAS--HDKFVKLWK 567
+ASA+ +DK +KLWK
Sbjct: 296 IIASAALENDKTIKLWK 312
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 23/317 (7%)
Query: 268 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 322
G + +G F + N ++ T V FS +G+ LA+ DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 382
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 439
+ +LI S D +R W + G C + + + + F ++++ + + I
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 440 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 497
D + C +L P+ V + P+G+ +LA+ ++++++W S+G+C+ + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 498 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETG 552
N+ + C+ F T +V G +L +WN+ + + L H ++ + A
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 553 YVASAS--HDKFVKLWK 567
+ASA+ +DK +KL+K
Sbjct: 296 IIASAALENDKTIKLYK 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 151/317 (47%), Gaps = 23/317 (7%)
Query: 268 GMDVSQGFSFKEAN-----SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 322
G + +G F + N ++ T V FS +G+ LA+ DK +W K +
Sbjct: 2 GQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE 61
Query: 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 382
+ H I+DV +S L ++S DKT+++WD + G L+T GHS V +F+P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNP 120
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 439
+ +LI S D +R W + G C + + + + F ++++ + + I
Sbjct: 121 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 440 DAETQACRLSL-QGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSEGECVHELSCN 497
D + C +L P+ V + P+G+ +LA+ ++++++W S+G+C+ + +
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGH 236
Query: 498 GNKFHSCV---FHPTYPSLLVIGCYQSL-ELWNMSENKTMT-LTAHEGLIAALAVSTETG 552
N+ + C+ F T +V G +L +WN+ + + L H ++ + A
Sbjct: 237 KNEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Query: 553 YVASAS--HDKFVKLWK 567
+ASA+ +DK +KL+K
Sbjct: 296 IIASAALENDKTIKLFK 312
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 91/327 (27%), Positives = 140/327 (42%), Gaps = 50/327 (15%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD------------TLKSKTNLEEHSS---- 330
TS V C FS+DG+ LATG + V +D K NL SS
Sbjct: 64 TSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSD 123
Query: 331 -LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389
I V FSP LAT + D+ +R+WD +N + GH + SLD+ P+ D L+
Sbjct: 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFPSGDKLV- 181
Query: 390 SCDGDGEIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQAC 446
S GD +R W + G C T + G + P G+Y+AA + + V + D+ET
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 447 RLSLQ-------GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE---------GE 489
L GH + SV + G+ + S S D SV++W + + + G
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 490 CVHELSCNGNK-FHSCVFHPTYPSLLVIGCY-QSLELWN-MSENKTMTLTAHEGLIAALA 546
C E++ G+K F V ++ G + + W+ S N + L H + ++A
Sbjct: 302 C--EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVA 359
Query: 547 VST------ETGYVASASHDKFVKLWK 567
V+ E A+ S D ++WK
Sbjct: 360 VANGSSLGPEYNVFATGSGDCKARIWK 386
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 48/255 (18%)
Query: 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD- 385
+H+S++ V+FS LAT +KT +V+ R G + +S D NKD
Sbjct: 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVY---------RVSDGSLVARLSDDSAANKDP 111
Query: 386 -DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN-VVSILDAET 443
+L S ++ S+ C F P G++LA AE+ ++ I D E
Sbjct: 112 ENLNTSSSPSSDLYIRSV----C------------FSPD-GKFLATGAEDRLIRIWDIEN 154
Query: 444 QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502
+ + LQGH + I S+ + PSG+ L S S D +VR+W + + G+C LS +
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE-DGVT 210
Query: 503 SCVFHPTYPSLLVIGCY-QSLELWNM----------SENKTMTLTAHEGLIAALAVSTET 551
+ P + G +++ +W+ SEN++ T H+ + ++ + +
Sbjct: 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDSVYSVVFTRDG 268
Query: 552 GYVASASHDKFVKLW 566
V S S D+ VKLW
Sbjct: 269 QSVVSGSLDRSVKLW 283
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/283 (26%), Positives = 135/283 (47%), Gaps = 23/283 (8%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349
+ C F G + +G D +W T K L H+ + + ++ + + S
Sbjct: 122 ITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNI--IISGST 177
Query: 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409
D+T++VW+A+ G + T GH+++V + H + + S D +R W I G C
Sbjct: 178 DRTLKVWNAET-GECIHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLH 233
Query: 410 VFKGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
V G A +R + GR + + A + +V + D ET+ C +LQGHT + S+ +D G
Sbjct: 234 VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 469 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527
+ S S D S+RVW V +G+ C+H L+ G++ + L+ ++++W++
Sbjct: 292 VVSGSLDTSIRVWDVETGN---CIHTLT--GHQSLTSGMELKDNILVSGNADSTVKIWDI 346
Query: 528 SENKTM-TLTA---HEGLIAALAVSTETGYVASASHDKFVKLW 566
+ + TL H+ + L + +V ++S D VKLW
Sbjct: 347 KTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLW 387
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 11/132 (8%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340
++++ T++V F DG + +G D +W +T L H SL + + +
Sbjct: 273 HTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN 330
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEI 397
+ L + + D TV++WD G L+T G H ++V L F NK+ +I S D DG +
Sbjct: 331 I--LVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSD-DGTV 384
Query: 398 RYWSINNGSCTR 409
+ W + G R
Sbjct: 385 KLWDLKTGEFIR 396
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 93/194 (47%), Gaps = 14/194 (7%)
Query: 387 LICSCDGDGEIRYWSINNGS--CTRVFKGG----TAQMRFQPHLGRYLAAAAENVVSILD 440
L+ SC GD IR W S C V G ++ + P G YLA+A+ + + +
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-CGNYLASASFDATTCIW 88
Query: 441 AETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496
+ Q C +L+GH + SV W PSG LLA+ S D SV VW V E ECV L+
Sbjct: 89 KKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS 148
Query: 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGY 553
+ V+HP+ L +++L+ E+ + TL HE + +LA
Sbjct: 149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQR 208
Query: 554 VASASHDKFVKLWK 567
+AS S D+ V++W+
Sbjct: 209 LASCSDDRTVRIWR 222
Score = 78.6 bits (192), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 46/310 (14%)
Query: 299 GKLLATGGHDKKAVLWHT--DTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRV 355
G LLA+ G D++ +W T D+ K+ L E H + V +SP LA++SFD T +
Sbjct: 28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 356 WDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVF 411
W + + + T GH V S+ + P+ +L+ +C D + W ++ C V
Sbjct: 88 WKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYECVSVL 146
Query: 412 KGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG 466
T ++ + P +A+ ++ V + E C +L+GH + S+ +DPSG
Sbjct: 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 467 ELLASVSED-SVRVW------------TVGSGSEGECVHELSCNGNKFHS-CVFHPTYPS 512
+ LAS S+D +VR+W GS +C+ C + FHS ++ +
Sbjct: 207 QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSRTIYDIAWCQ 262
Query: 513 L---LVIGC-YQSLELWNMSENK-----TMTLTAH------EGLIAALAVSTETGYVASA 557
L L C ++ ++ N T +LTAH + + E G +AS
Sbjct: 263 LTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASC 322
Query: 558 SHDKFVKLWK 567
S D V WK
Sbjct: 323 SDDGEVAFWK 332
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 31/209 (14%)
Query: 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLIT 333
F+ ++ ++V ++ G LLAT DK +W D + + L H+ +
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 334 DVRFSPSMPRLATSSFDKTVRVW-DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 392
V + PS LA++S+D TV+++ + ++ T GH ++V SL F P+ L SC
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCS 213
Query: 393 GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG 452
D +R W +YL + V + C +L G
Sbjct: 214 DDRTVRIWR------------------------QYLPGNEQGVACSGSDPSWKCICTLSG 249
Query: 453 -HTKPIDSVCW-DPSGELLASVSEDSVRV 479
H++ I + W +G L + +D++RV
Sbjct: 250 FHSRTIYDIAWCQLTGALATACGDDAIRV 278
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 22/119 (18%)
Query: 462 WDPSGELLASVSED-SVRVWTVGSGSEGECV---------HELSCNGNKFHSCVFHPTYP 511
W+P+G LLAS D +R+W G+EG+ H+ + + C +
Sbjct: 24 WNPAGTLLASCGGDRRIRIW----GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 512 SLLVIGCYQSLELWNMSENK---TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
S C +W +++ TL HE + ++A + +A+ S DK V +W+
Sbjct: 80 SFDATTC-----IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 450
WS+ G T F T Q R ++ Y + A+ + + I D +T++C +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+GH + + P+ ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 425
+TF S V +DFHP + ++ + G + W+ R + +R +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 426 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 481
R ++ +++ + + + T + + H I S+ P+ + S S+D +V++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 482 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 535
E E + G++ F CV F+P PS GC +++++W++ + N T+T
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 536 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 566
G+ + Y+ +AS D +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 9/255 (3%)
Query: 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378
L K S + + F P+ P + T+ + V +W+ + +R+ V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-VEVRSIQVTETPVRAG 61
Query: 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENV 435
F K+ +I D D IR ++ N G F+ +R P L+ + +
Sbjct: 62 KFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 436 VSILDAETQ-ACRLSLQGHTKPIDSVCWDPS--GELLASVSEDSVRVWTVGSGSEGECVH 492
V + + E A + +GH + V ++P + + +V+VW++G + +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVSTET 551
G + P P ++ ++++W+ +++ TL H ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 552 GYVASASHDKFVKLW 566
+ S S D +K+W
Sbjct: 241 PIIISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
D + T D +W T LE H S ++ F P++P + + S D T+++W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 358 A 358
+
Sbjct: 257 S 257
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 450
WS+ G T F T Q R ++ Y + A+ + + I D +T++C +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+GH + + P+ ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 9/255 (3%)
Query: 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378
L K S + + F P+ P + T+ + V +W+ + +R+ V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-VEVRSIQVTETPVRAG 61
Query: 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENV 435
F K+ +I D D IR ++ N G F+ +R P L+ + +
Sbjct: 62 KFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 436 VSILDAETQ-ACRLSLQGHTKPIDSVCWDPS--GELLASVSEDSVRVWTVGSGSEGECVH 492
V + + E A + +GH + V ++P + + +V+VW++G + +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVSTET 551
G + P P ++ ++++W+ +++ TL H ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 552 GYVASASHDKFVKLW 566
+ S S D +K+W
Sbjct: 241 PIIISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
D + T D +W T LE H S ++ F P++P + + S D T+++W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 358 A 358
+
Sbjct: 257 S 257
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 450
WS+ G T F T Q R ++ Y + A+ + + I D +T++C +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+GH + + P+ ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 425
+TF S V +DFHP + ++ + G + W+ R + +R +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 426 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 481
R ++ +++ + + + T + + H I S+ P+ + S S+D +V++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 482 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 535
E E + G++ F CV F+P PS GC +++++W++ + N T+T
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 536 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 566
G+ + Y+ +AS D +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 9/255 (3%)
Query: 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378
L K S + + F P+ P + T+ + V +W+ + +R+ V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAG 61
Query: 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENV 435
F K+ +I D D IR ++ N G F+ +R P L+ + +
Sbjct: 62 KFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 436 VSILDAETQ-ACRLSLQGHTKPIDSVCWDPS--GELLASVSEDSVRVWTVGSGSEGECVH 492
V + + E A + +GH + V ++P + + +V+VW++G + +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVSTET 551
G + P P ++ ++++W+ +++ TL H ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 552 GYVASASHDKFVKLW 566
+ S S D +K+W
Sbjct: 241 PIIISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
D + T D +W T LE H S ++ F P++P + + S D T+++W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 358 A 358
+
Sbjct: 257 S 257
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 98/211 (46%), Gaps = 11/211 (5%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338
E S++ + + V F + + G D + +++ +T + + E H I +
Sbjct: 47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVH 106
Query: 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398
P+ P + + S D TV++W+ +N +TF GH VM + F+P S D ++
Sbjct: 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK 166
Query: 399 YWSINNGSCTRVFKGGTAQMRFQPHLGRY--------LAAAAENVVSILDAETQACRLSL 450
WS+ G T F T Q R ++ Y + A+ + + I D +T++C +L
Sbjct: 167 VWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
Query: 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVW 480
+GH + + P+ ++ S SED ++++W
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 16/212 (7%)
Query: 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLG 425
+TF S V +DFHP + ++ + G + W+ R + +R +
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 426 R--YLAAAAENV-VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT 481
R ++ +++ + + + T + + H I S+ P+ + S S+D +V++W
Sbjct: 66 RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW- 124
Query: 482 VGSGSEGECVHELSCNGNK-FHSCV-FHPTYPSLLVIGCY-QSLELWNMSE---NKTMTL 535
E E + G++ F CV F+P PS GC +++++W++ + N T+T
Sbjct: 125 ---NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181
Query: 536 TAHEGL-IAALAVSTETGYVASASHDKFVKLW 566
G+ + Y+ +AS D +K+W
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/255 (18%), Positives = 99/255 (38%), Gaps = 9/255 (3%)
Query: 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378
L K S + + F P+ P + T+ + V +W+ + +R+ V +
Sbjct: 3 LDIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYET-QVEVRSIQVTETPVRAG 61
Query: 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENV 435
F K+ +I D D IR ++ N G F+ +R P L+ + +
Sbjct: 62 KFIARKNWIIVGSD-DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLT 120
Query: 436 VSILDAETQ-ACRLSLQGHTKPIDSVCWDPS--GELLASVSEDSVRVWTVGSGSEGECVH 492
V + + E A + +GH + V ++P + + +V+VW++G + +
Sbjct: 121 VKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMTLTAHEGLIAALAVSTET 551
G + P P ++ ++++W+ +++ TL H ++
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL 240
Query: 552 GYVASASHDKFVKLW 566
+ S S D +K+W
Sbjct: 241 PIIISGSEDGTLKIW 255
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357
D + T D +W T LE H S ++ F P++P + + S D T+++W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Query: 358 A 358
+
Sbjct: 257 S 257
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 122/259 (47%), Gaps = 26/259 (10%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
LE HS+ ++DV S + ++S+D ++R+W+ N G F+GH+ V+S+ F P+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDN 121
Query: 385 DDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGR--YLAAAAENVVS 437
++ S D +R W++ G C G + +RF P L ++ +N+V
Sbjct: 122 RQIV-SGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-RVWTVGSGSEGECVHELSC 496
+ D T L+GHT + SV P G L AS +D V R+W + ++GE + E++
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMAA 236
Query: 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---AHEG------LIAALAV 547
G + F P + + + ++++ ENK + + H+G ++A
Sbjct: 237 -GAPINQICFSPNR-YWMCAATEKGIRIFDL-ENKDIIVELAPEHQGSKKIVPECVSIAW 293
Query: 548 STETGYVASASHDKFVKLW 566
S + + S D +++W
Sbjct: 294 SADGSTLYSGYTDNVIRVW 312
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 94/210 (44%), Gaps = 18/210 (8%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT-NLEEHSSLITDVRFSPSM--PR 343
T V+ FS D + + +GG D +W+ T + H+ ++ VRFSPS+ P
Sbjct: 109 TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV 168
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403
+ + +D V+VWD G + GH+ V S+ P+ L S D DG R W +
Sbjct: 169 IVSGGWDNLVKVWDLAT-GRLVTDLKGHTNYVTSVTVSPD-GSLCASSDKDGVARLWDLT 226
Query: 404 NGSCTRVFKGGTA--QMRFQPHLGRY-LAAAAENVVSILDAETQACRLSL----QGHTKP 456
G G Q+ F P+ RY + AA E + I D E + + L QG K
Sbjct: 227 KGEALSEMAAGAPINQICFSPN--RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKI 284
Query: 457 ID---SVCWDPSGELLAS-VSEDSVRVWTV 482
+ S+ W G L S +++ +RVW V
Sbjct: 285 VPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 78/189 (41%), Gaps = 5/189 (2%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
S++G + D LW+ + + H+ + V FSP ++ + D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKG 413
VW+ + H+ V + F P+ D +I S D ++ W + G KG
Sbjct: 135 VWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKG 194
Query: 414 GT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
T + P G A++ ++ V+ L T+ LS PI+ +C+ P+ +
Sbjct: 195 HTNYVTSVTVSPD-GSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMC 253
Query: 471 SVSEDSVRV 479
+ +E +R+
Sbjct: 254 AATEKGIRI 262
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 76.3 bits (186), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 128/311 (41%), Gaps = 27/311 (8%)
Query: 236 DMDRLVEDGSLDDNVESFLSHDDTDPRDAGG-RGMDVSQGFSFKEANSVRASTSKVICCH 294
++ RLV D + S D G + + V + + ++ ++A +V+CC
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR--LATSSFDKT 352
FS+D + +AT DKK +W++ T + +EHS + F+ S LAT S D
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCF 730
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW---------SIN 403
+++WD N T GH+ SV F P+ D L+ SC DG ++ W SIN
Sbjct: 731 LKLWDL-NQKECRNTMFGHTNSVNHCRFSPD-DKLLASCSADGTLKLWDATSANERKSIN 788
Query: 404 NGSCTRVFKGGTAQMRFQPHL------GRYLAAAAENVVSILDAETQACRLSLQ-GHTKP 456
+ M G + AA+N + + D T + GH
Sbjct: 789 VKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHST 848
Query: 457 IDSVCWDPSGEL-LASVSEDSVRVWTVGSGSE-GECVHELSCNGNKFHSCVFHPTYPSLL 514
I + P L + ++S+ V +W S S+ +C LS H +F P S L
Sbjct: 849 IQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSW----VHGVMFSPDGSSFL 904
Query: 515 VIGCYQSLELW 525
Q++ LW
Sbjct: 905 TSSDDQTIRLW 915
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 120/286 (41%), Gaps = 21/286 (7%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
S + C FS L LW+TD+ + H S + V FSP TS
Sbjct: 847 STIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTS 906
Query: 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
S D+T+R+W+ + + V+ F N + ++ + D IR + NG
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVV---FQEN-EVMVLAVD---HIRRLQLINGRT 959
Query: 408 TRVFKGGTAQMR---FQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWD 463
++ AQ+ PHL +Y+A EN + IL+ S H K + + +
Sbjct: 960 GQIDYLTEAQVSCCCLSPHL-QYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFT 1018
Query: 464 PSGELLASVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-S 521
+ L S S+D+ ++VW + +C+ G++ F S L+ + +
Sbjct: 1019 ADEKTLISSSDDAEIQVW---NWQLDKCIF---LRGHQETVKDFRLLKNSRLLSWSFDGT 1072
Query: 522 LELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
+++WN ++ NK H+G + + +S + +S S DK K+W
Sbjct: 1073 VKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 61/160 (38%), Gaps = 13/160 (8%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349
V+ C S D ++ DK A +W D L L H+ + FS LAT
Sbjct: 1094 VLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD 1153
Query: 350 DKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402
+ +R+W+ N S H V L F P+ LI G I++W++
Sbjct: 1154 NGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLI---SAGGYIKWWNV 1210
Query: 403 NNGSCTRVF-KGGT--AQMRFQPHLGRYLAAAAENVVSIL 439
G ++ F GT ++ P Y+ ++ IL
Sbjct: 1211 VTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYIL 1250
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 49/231 (21%)
Query: 302 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD-- 359
L + D +W+ T + + H + S + +++S DKT ++W D
Sbjct: 1064 LLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS----CTRVFKGGT 415
P + LR GH+ V F + L+ + D +GEIR W+++NG C + + G
Sbjct: 1124 LPLHELR---GHNGCVRCSAFSVD-STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGA 1179
Query: 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475
A H + +C+ P G++L S
Sbjct: 1180 A-----------------------------------THGGWVTDLCFSPDGKMLISAG-G 1203
Query: 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS---LLVIGCYQSLE 523
++ W V +G + + N K H TY + L ++ Q+LE
Sbjct: 1204 YIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVTVDNLGILYILQTLE 1254
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 531 KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
K + + AHE + A ST+ ++A+ S DK VK+W
Sbjct: 655 KLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIW 690
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/307 (17%), Positives = 122/307 (39%), Gaps = 34/307 (11%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-------------EE 327
N++ T+ V C FS D KLLA+ D LW + + ++ E+
Sbjct: 743 NTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQED 802
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387
++ +S R+ ++ +K + ++D G GH +++ DF P ++ L
Sbjct: 803 MEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEIHTGHHSTIQYCDFSP-QNHL 860
Query: 388 ICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQ 444
+ W+ ++ S +G + + F P +L ++ + + + + + +
Sbjct: 861 AVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETK-K 919
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH----ELSCNGNK 500
C+ S + +D V + +LA D +R + +G G+ + ++SC
Sbjct: 920 VCKNSAVMLKQEVDVVFQENEVMVLAV---DHIRRLQLINGRTGQIDYLTEAQVSC---- 972
Query: 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 559
C P + ++E+ + N+ + H+ + + + + + S+S
Sbjct: 973 ---CCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSD 1029
Query: 560 DKFVKLW 566
D +++W
Sbjct: 1030 DAEIQVW 1036
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 98/199 (49%), Gaps = 15/199 (7%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
T V+C + D +++ TG D +W +T + L H + +RF+ M + T
Sbjct: 173 TGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVT 228
Query: 347 SSFDKTVRVWDADNP-GYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404
S D+++ VWD +P +L R +GH A+V +DF D I S GD I+ W+ +
Sbjct: 229 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTST 285
Query: 405 GSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 461
R G G A ++++ L ++ +++N + + D E AC L+GH + + +
Sbjct: 286 CEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR 343
Query: 462 WDPSGELLASVSEDSVRVW 480
+D + +++ + ++VW
Sbjct: 344 FD-NKRIVSGAYDGKIKVW 361
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 20/149 (13%)
Query: 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG 485
+ ++ +N + I D T C+ L GHT + + +D + S S+ +VRVW V +G
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNTG 203
Query: 486 SEGECVHELSCNGNKFHSC--VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTL----TA 537
E ++ L H C V H + + +++ C + S+ +W+M+ +TL
Sbjct: 204 ---EMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG 254
Query: 538 HEGLIAALAVSTETGYVASASHDKFVKLW 566
H A V + Y+ SAS D+ +K+W
Sbjct: 255 HRA--AVNVVDFDDKYIVSASGDRTIKVW 281
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 24/219 (10%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 343
T V+ FSSD + + +G DK LW+T K E HS ++ VRFSP S P
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 187
Query: 344 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 401
+ + +DK V+VW+ N L+T +GH+ + ++ P D +C+ G DG+ W
Sbjct: 188 IVSCGWDKLVKVWNLANC--KLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 243
Query: 402 INNGSCTRVFKGG--TAQMRFQPHLGRY-LAAAAENVVSILDAE---------TQACRLS 449
+N G GG + F P+ RY L AA + I D E + S
Sbjct: 244 LNEGKHLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 301
Query: 450 LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 487
+ S+ W G+ L A +++ VRVW V G+
Sbjct: 302 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 126/297 (42%), Gaps = 45/297 (15%)
Query: 301 LLATGGHDKKAVLW-----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
++ + DK ++W T+ + L HS ++DV S + S+D T+R+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + R F+GH+ V+S+ F + ++ S D I+ W+ G C +
Sbjct: 113 WDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQDES 169
Query: 414 ---GTAQMRFQPHLGR--YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
+ +RF P+ ++ + +V + + + + GHT +++V P G L
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 469 LASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 521
AS +D +W + G G+ ++ L + N++ C T P S
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGP---------S 278
Query: 522 LELWNMSENKTMTLTAHEGLIA-----------ALAVSTETGYVASASHDKFVKLWK 567
+++W++ E K + + +I+ +LA S + + + D V++W+
Sbjct: 279 IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 5/190 (2%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
SSDG+ +G D LW T + H+ + V FS ++ + S DKT++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRVFKG 413
+W+ HS V + F PN + +I SC D ++ W++ N G
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 414 GTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
T + P G A+ ++ ++L + L I+++C+ P+ L
Sbjct: 214 HTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 471 SVSEDSVRVW 480
+ + S+++W
Sbjct: 273 AATGPSIKIW 282
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Query: 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-----NNGSCTRVFKGGT---AQM 418
T GH+ V + P D+I S D I W + N G R +G + + +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SV 477
L+ + + + + D T GHTK + SV + + S S D ++
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 152
Query: 478 RVWTVGSGSEGECVHELSCNGN-KFHSCV-FHPTYPSLLVIGCY--QSLELWNMSENKTM 533
++W + G C + + + ++ SCV F P + +++ C + +++WN++ K
Sbjct: 153 KLW----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208
Query: 534 T-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
T H G + + VS + AS D LW
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 442 ETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499
E R +L+GH + + P +++ S S D ++ +W + + + + G+
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 500 K-FHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVAS 556
F S V + + G + +L LW+++ T H + ++A S++ + S
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 557 ASHDKFVKLW 566
S DK +KLW
Sbjct: 146 GSRDKTIKLW 155
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 24/219 (10%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSP--SMPR 343
T V+ FSSD + + +G DK LW+T K E HS ++ VRFSP S P
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI 164
Query: 344 LATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWS 401
+ + +DK V+VW+ N L+T +GH+ + ++ P D +C+ G DG+ W
Sbjct: 165 IVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSP--DGSLCASGGKDGQAMLWD 220
Query: 402 INNGSCTRVFKGG--TAQMRFQPHLGRY-LAAAAENVVSILDAE---------TQACRLS 449
+N G GG + F P+ RY L AA + I D E + S
Sbjct: 221 LNEGKHLYTLDGGDIINALCFSPN--RYWLCAATGPSIKIWDLEGKIIVDELKQEVISTS 278
Query: 450 LQGHTKPIDSVCWDPSGE-LLASVSEDSVRVWTVGSGSE 487
+ S+ W G+ L A +++ VRVW V G+
Sbjct: 279 SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 63/297 (21%), Positives = 126/297 (42%), Gaps = 45/297 (15%)
Query: 301 LLATGGHDKKAVLW-----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
++ + DK ++W T+ + L HS ++DV S + S+D T+R+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + R F+GH+ V+S+ F + ++ S D I+ W+ G C +
Sbjct: 90 WDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTVQDES 146
Query: 414 ---GTAQMRFQPHLGR--YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
+ +RF P+ ++ + +V + + + + GHT +++V P G L
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 469 LASVSED-SVRVWTVGSGSE------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS 521
AS +D +W + G G+ ++ L + N++ C T P S
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGP---------S 255
Query: 522 LELWNMSENKTMTLTAHEGLIA-----------ALAVSTETGYVASASHDKFVKLWK 567
+++W++ E K + + +I+ +LA S + + + D V++W+
Sbjct: 256 IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 5/190 (2%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
SSDG+ +G D LW T + H+ + V FS ++ + S DKT++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDGDGEIRYWSINNGSCTRVFKG 413
+W+ HS V + F PN + +I SC D ++ W++ N G
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 414 GTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
T + P G A+ ++ ++L + L I+++C+ P+ L
Sbjct: 191 HTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 471 SVSEDSVRVW 480
+ + S+++W
Sbjct: 250 AATGPSIKIW 259
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 88/214 (41%), Gaps = 18/214 (8%)
Query: 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-----NNGSCTRVFKGGT---AQM 418
T GH+ V + P D+I S D I W + N G R +G + + +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SV 477
L+ + + + + D T GHTK + SV + + S S D ++
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 478 RVWTVGSGSEGECVHELSCNGN-KFHSCV-FHPTYPSLLVIGCY--QSLELWNMSENKTM 533
++W + G C + + + ++ SCV F P + +++ C + +++WN++ K
Sbjct: 130 KLW----NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 185
Query: 534 T-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
T H G + + VS + AS D LW
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)
Query: 442 ETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499
E R +L+GH + + P +++ S S D ++ +W + + + + G+
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 500 K-FHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVAS 556
F S V + + G + +L LW+++ T H + ++A S++ + S
Sbjct: 63 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 557 ASHDKFVKLW 566
S DK +KLW
Sbjct: 123 GSRDKTIKLW 132
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 123/301 (40%), Gaps = 13/301 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 113
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 391
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 171
Query: 392 DGDGEIRYWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
GD W I + G + P +++ A + + D CR
Sbjct: 172 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 231
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVF 506
+ GH I+++C+ P+G A+ S+D + R++ + + E H+ G S F
Sbjct: 232 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 289
Query: 507 HPTYPSLLVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
+ LL + +W+ + ++ L H+ ++ L V+ + VA+ S D F+K+
Sbjct: 290 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 349
Query: 566 W 566
W
Sbjct: 350 W 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 123/301 (40%), Gaps = 13/301 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 391
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 392 DGDGEIRYWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
GD W I + G + P +++ A + + D CR
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVF 506
+ GH I+++C+ P+G A+ S+D + R++ + + E H+ G S F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
Query: 507 HPTYPSLLVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
+ LL + +W+ + ++ L H+ ++ L V+ + VA+ S D F+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 566 W 566
W
Sbjct: 339 W 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/301 (20%), Positives = 123/301 (40%), Gaps = 13/301 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 391
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 392 DGDGEIRYWSIN---NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
GD W I + G + P +++ A + + D CR
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVF 506
+ GH I+++C+ P+G A+ S+D + R++ + + E H+ G S F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
Query: 507 HPTYPSLLVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
+ LL + +W+ + ++ L H+ ++ L V+ + VA+ S D F+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 566 W 566
W
Sbjct: 339 W 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 124/301 (41%), Gaps = 13/301 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 391
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 392 DGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
GD W I G T G + P +++ A + + D CR
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVF 506
+ GH I+++C+ P+G A+ S+D + R++ + + E H+ G S F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
Query: 507 HPTYPSLLVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
+ LL + +W+ + ++ L H+ ++ L V+ + VA+ S D F+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 566 W 566
W
Sbjct: 339 W 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/301 (20%), Positives = 124/301 (41%), Gaps = 13/301 (4%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
+ ++R +K+ H+ +D +LL + D K ++W + T + SS +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 335 VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSC 391
++PS +A D +++ ++R GH+ + F D+ I +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD--DNQIVTS 160
Query: 392 DGDGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
GD W I G T G + P +++ A + + D CR
Sbjct: 161 SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ 220
Query: 449 SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV-HELSCNGNKFHSCVF 506
+ GH I+++C+ P+G A+ S+D + R++ + + E H+ G S F
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSF 278
Query: 507 HPTYPSLLVIGCYQSLELWN-MSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565
+ LL + +W+ + ++ L H+ ++ L V+ + VA+ S D F+K+
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338
Query: 566 W 566
W
Sbjct: 339 W 339
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 25/305 (8%)
Query: 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 342
VR T V FS DG+ +A+ G DK ++ +T + +++ H + FS
Sbjct: 618 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 677
Query: 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEIRYW 400
+AT S DK V++WD+ G + T+ HS V F NK + L+ + D ++ W
Sbjct: 678 YIATCSADKKVKIWDSAT-GKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLW 735
Query: 401 SINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---- 453
+N C G T + RF P + +A+ + + D + R S+
Sbjct: 736 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 795
Query: 454 --------TKPIDSVC-WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC 504
+ I C W G+ + +++ V ++ + + +H + + + C
Sbjct: 796 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYC 853
Query: 505 VFHPTYPSLLVIGCYQ-SLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 562
F P Y L VI Q +ELWN+ S K H + + S + +AS D+
Sbjct: 854 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 563 VKLWK 567
+++W+
Sbjct: 913 IRVWE 917
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380
S+ + H+ + FS R+A+ DKT++V+ A+ G L H V+ F
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAF 672
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAEN--V 435
+ D I +C D +++ W G + + Q+ F L A N
Sbjct: 673 SSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 731
Query: 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492
+ + D + CR ++ GHT ++ + P ELLAS S D ++R+W V S +E + ++
Sbjct: 732 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 789
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 27/289 (9%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
S + C FS L LW+ D+ + H S + V FSP T+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 907
Query: 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
S D+T+RVW+ + + V+ F N + ++ + D ++ + G
Sbjct: 908 SDDQTIRVWETKKVCKNSAIVLKQEIDVV---FQEN-ETMVLAVDNIRGLQLIAGKTGQI 963
Query: 408 TRVFKGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+ + + PHL Y+A E+ + I++ S GH K + + + G
Sbjct: 964 DYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 467 ELLASVSEDSV-RVWTVGSG------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519
+ L S SEDSV +VW +G + E V + F S L+ +
Sbjct: 1023 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD------------FRLLQDSRLLSWSF 1070
Query: 520 Q-SLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++++WN+ + T H+G + + A+S++ +S S DK K+W
Sbjct: 1071 DGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349
V+ C SSD ++ DK A +W D L L+ H+ + FS LAT
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1154
Query: 350 DKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
+ +R+W+ + P H V + F P+ L+ G +++W+
Sbjct: 1155 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV---SAGGYLKWWN 1211
Query: 402 INNGSCTRVF-KGGT--AQMRFQPHLGRYLAAAAENVVSILDA 441
+ G ++ F GT ++ P Y+ ++ IL
Sbjct: 1212 VATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1254
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356
D +LL + D +W+ T + + + H + S + +++S DKT ++W
Sbjct: 1061 QDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 357 DAD--NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
D +P + L+ GH+ V F + L+ + D +GEIR W++++G
Sbjct: 1120 SFDLLSPLHELK---GHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQ 1167
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 54/307 (17%), Positives = 122/307 (39%), Gaps = 34/307 (11%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-------------EE 327
N++ T+ V C FS D +LLA+ D LW + + ++ E+
Sbjct: 744 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 803
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387
++ +S ++ ++ +K V ++D G GH +++ DF P D L
Sbjct: 804 VEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHL 861
Query: 388 ICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQ 444
+ W+I++ +G + + F P +L A+ + + + + + +
Sbjct: 862 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-K 920
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH----ELSCNGNK 500
C+ S + ID V + +LA D++R + +G G+ + ++SC
Sbjct: 921 VCKNSAIVLKQEIDVVFQENETMVLAV---DNIRGLQLIAGKTGQIDYLPEAQVSC---- 973
Query: 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASH 559
C P + ++++ + N+ + H+ + + + + + S+S
Sbjct: 974 ---CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1030
Query: 560 DKFVKLW 566
D +++W
Sbjct: 1031 DSVIQVW 1037
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 25/305 (8%)
Query: 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP 342
VR T V FS DG+ +A+ G DK ++ +T + +++ H + FS
Sbjct: 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDS 670
Query: 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDGEIRYW 400
+AT S DK V++WD+ G + T+ HS V F NK + L+ + D ++ W
Sbjct: 671 YIATCSADKKVKIWDS-ATGKLVHTYDEHSEQVNCCHF-TNKSNHLLLATGSNDFFLKLW 728
Query: 401 SINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH---- 453
+N C G T + RF P + +A+ + + D + R S+
Sbjct: 729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFL 788
Query: 454 --------TKPIDSVC-WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSC 504
+ I C W G+ + +++ V ++ + + +H + + + C
Sbjct: 789 SSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH--TGHHSTIQYC 846
Query: 505 VFHPTYPSLLVIGCYQ-SLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 562
F P Y L VI Q +ELWN+ S K H + + S + +AS D+
Sbjct: 847 DFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 563 VKLWK 567
+++W+
Sbjct: 906 IRVWE 910
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380
S+ + H+ + FS R+A+ DKT++V+ A+ G L H V+ F
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET-GEKLLDIKAHEDEVLCCAF 665
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQM---RFQPHLGRYLAAAAEN--V 435
+ D I +C D +++ W G + + Q+ F L A N
Sbjct: 666 SSD-DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFF 724
Query: 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492
+ + D + CR ++ GHT ++ + P ELLAS S D ++R+W V S +E + ++
Sbjct: 725 LKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN 782
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 49/300 (16%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS 347
S + C FS L LW+ D+ + H S + V FSP T+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTA 900
Query: 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407
S D+T+RVW+ + +SA V+ + D++ + E +++N
Sbjct: 901 SDDQTIRVWET-------KKVCKNSAIVLKQEI-----DVVFQ---ENETMVLAVDNIRG 945
Query: 408 TRVFKGGTAQMRF-----------QPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTK 455
++ G T Q+ + PHL Y+A E+ + I++ S GH K
Sbjct: 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHL-EYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004
Query: 456 PIDSVCWDPSGELLASVSEDSV-RVWTVGSG------SEGECVHELSCNGNKFHSCVFHP 508
+ + + G+ L S SEDSV +VW +G + E V + F
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKD------------FRL 1052
Query: 509 TYPSLLVIGCYQ-SLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
S L+ + ++++WN+ + T H+G + + A+S++ +S S DK K+W
Sbjct: 1053 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 14/163 (8%)
Query: 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349
V+ C SSD ++ DK A +W D L L+ H+ + FS LAT
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDD 1147
Query: 350 DKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
+ +R+W+ + P H V + F P+ L+ G +++W+
Sbjct: 1148 NGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLV---SAGGYLKWWN 1204
Query: 402 INNGSCTRVF-KGGT--AQMRFQPHLGRYLAAAAENVVSILDA 441
+ G ++ F GT ++ P Y+ ++ IL
Sbjct: 1205 VATGDSSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356
D +LL + D +W+ T + + + H + S + +++S DKT ++W
Sbjct: 1054 QDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 357 DAD--NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
D +P + L+ GH+ V F + L+ + D +GEIR W++++G
Sbjct: 1113 SFDLLSPLHELK---GHNGCVRCSAFSLD-GILLATGDDNGEIRIWNVSDGQ 1160
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 54/307 (17%), Positives = 122/307 (39%), Gaps = 34/307 (11%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL-------------EE 327
N++ T+ V C FS D +LLA+ D LW + + ++ E+
Sbjct: 737 NTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPED 796
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL 387
++ +S ++ ++ +K V ++D G GH +++ DF P D L
Sbjct: 797 VEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEIHTGHHSTIQYCDFSP-YDHL 854
Query: 388 ICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQ 444
+ W+I++ +G + + F P +L A+ + + + + + +
Sbjct: 855 AVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETK-K 913
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH----ELSCNGNK 500
C+ S + ID V + +LA D++R + +G G+ + ++SC
Sbjct: 914 VCKNSAIVLKQEIDVVFQENETMVLAV---DNIRGLQLIAGKTGQIDYLPEAQVSC---- 966
Query: 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-TAHEGLIAALAVSTETGYVASASH 559
C P + ++++ + N+ + H+ + + + + + S+S
Sbjct: 967 ---CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023
Query: 560 DKFVKLW 566
D +++W
Sbjct: 1024 DSVIQVW 1030
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 119/268 (44%), Gaps = 23/268 (8%)
Query: 282 SVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWH-TDTLKS----KTNLEEHSSLITDV 335
++RA T V D ++ + DK +LW T K+ + L HS + DV
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395
S + S+D +R+WD G S R F+GH+ V+S+ F + I S D
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQ-IVSASRDR 494
Query: 396 EIRYWSINNGSCTRVFKGGTAQ------MRFQPHLGR--YLAAAAENVVSILDAETQACR 447
I+ W+ + +GG +RF P+ + ++A+ + V + + R
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554
Query: 448 LSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGECVHELSCNGNKFHSCVF 506
+L GHT + +V P G L AS +D V +W + +EG+ ++ L N + H+ F
Sbjct: 555 STLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---AEGKKLYSLEAN-SVIHALCF 610
Query: 507 HPTYPSLLVIGCYQSLELWNMSENKTMT 534
P L +++W++ E+K++
Sbjct: 611 SPNR-YWLCAATEHGIKIWDL-ESKSIV 636
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 109/267 (40%), Gaps = 75/267 (28%)
Query: 322 KTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVW----DADNPGYSLRTFMGHSASV 375
K + H+ ++T + +P + + ++S DK++ +W D G + R GHS V
Sbjct: 375 KGTMRAHTDMVTAIA-TPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 376 MSLDFHPNKDDLICSCDG--------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY 427
+D++ S DG DGE+R W + G TR F
Sbjct: 434 ---------EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRF---------------- 468
Query: 428 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486
GHTK + SV + + S S D ++++W +
Sbjct: 469 -----------------------VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN----T 501
Query: 487 EGECVHELSCNGN---KFHSCV-FHPT--YPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539
GEC + +S G + SCV F P P+++ +++++WN+S K TL H
Sbjct: 502 LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT 561
Query: 540 GLIAALAVSTETGYVASASHDKFVKLW 566
G ++ +AVS + AS D V LW
Sbjct: 562 GYVSTVAVSPDGSLCASGGKDGVVLLW 588
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 99/216 (45%), Gaps = 8/216 (3%)
Query: 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK 322
DA R D+ G K+ S+ A FS D + LATG H K ++ ++ K +
Sbjct: 101 DAHIRLWDLENG---KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 382
+L+ I + +SP LA+ + D + ++D G L T GH+ + SL F P
Sbjct: 158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSP 216
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA---QMRFQPHLGRYLAAAAENVVSIL 439
+ L+ + D DG I+ + + + + G + + F P +++++++ V +
Sbjct: 217 DSQLLVTASD-DGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 275
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475
D T+ C + H + V ++ +G + SV +D
Sbjct: 276 DVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDD 311
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/264 (20%), Positives = 105/264 (39%), Gaps = 53/264 (20%)
Query: 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369
K W + L + +LE H + V S ++P A+SS D +R+WD +N G +++
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN-GKQIKSID 119
Query: 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGG-TAQMRFQPHLGR 426
+L F P+ L G++ + + +G +G + + P G+
Sbjct: 120 AGPVDAWTLAFSPDSQYLATGTHV-GKVNIFGVESGKKEYSLDTRGKFILSIAYSPD-GK 177
Query: 427 YLAAAA-ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSV-------- 477
YLA+ A + +++I D T +L+GH PI S+ + P +LL + S+D
Sbjct: 178 YLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH 237
Query: 478 -----------------------------------RVWTVGSGSEGECVHELSCNGNKFH 502
+VW VG+ + CVH + ++
Sbjct: 238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT---CVHTFFDHQDQVW 294
Query: 503 SCVFHPTYPSLLVIGCYQSLELWN 526
++ ++ +G Q + +++
Sbjct: 295 GVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 344 LATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402
+ T S D V+VW + L+ + GH V+S+D + + S D IR W +
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDI-SHTLPIAASSSLDAHIRLWDL 109
Query: 403 NNGSCTRVFKGGTAQ---MRFQPHLGRYLAAAAE-NVVSILDAETQACRLSLQGHTKPID 458
NG + G + F P +YLA V+I E+ SL K I
Sbjct: 110 ENGKQIKSIDAGPVDAWTLAFSPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 459 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518
S+ + P G+ LAS + D + + + G+ +H L + S F P L+
Sbjct: 169 SIAYSPDGKYLASGAIDGII--NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 519 YQSLELWNMSE-NKTMTLTAHEGLIAALA 546
++++++ N TL+ H + +A
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVA 255
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
FS D +LL T D ++ L H+S + +V F P +SS DK+V+
Sbjct: 214 FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK 273
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398
VWD + TF H V + ++ N ++ D D EI
Sbjct: 274 VWDVGTRT-CVHTFFDHQDQVWGVKYNGNGSKIVSVGD-DQEIH 315
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350
+S+DG LAT DK +W TD + + L+EHS + V + PS LA+SS+D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 351 KTVRVW-DADNPGYSLRTFMGHSASVMSLDFHPNKDDL-ICSCDGDGEIRYW 400
TVR+W D D+ + GH +V S DF + +CS D +R W
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 412 KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-------SLQGHTKPIDSVCWDP 464
K + ++PH A + ++ VSI E A R ++GH + V W
Sbjct: 58 KKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN 117
Query: 465 SGELLASVSED-SVRVW-TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QS 521
G LA+ S D SV +W T SG E EC+ L + ++HP+ +LL Y +
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDT 176
Query: 522 LELWNMSENK---TMTLTAHEGLIAALAVSTETGY--VASASHDKFVKLWK 567
+ +W ++ L HEG + + G + S S D V++WK
Sbjct: 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 87/242 (35%), Gaps = 54/242 (22%)
Query: 281 NSVRASTSKVICCHFSSDGKLLATGGHDKK----AVLWHTDTLKSKTNLEEHSSLITDVR 336
S++ K+ FS +LATG D+K +V + TL + H I V
Sbjct: 8 KSLKLYKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVA 65
Query: 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTF--------MGHSASVMSLDFHPNKDDLI 388
+ P LA SFD TV +W + + RTF GH V + + N +
Sbjct: 66 WRPHTSLLAAGSFDSTVSIWAKEES--ADRTFEMDLLAIIEGHENEVKGVAW-SNDGYYL 122
Query: 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448
+C D + W + E C
Sbjct: 123 ATCSRDKSVWIWETDES-----------------------------------GEEYECIS 147
Query: 449 SLQGHTKPIDSVCWDPSGELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507
LQ H++ + V W PS LLAS S +D+VR+W + ECV L+ + S F
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK-DYDDDWECVAVLNGHEGTVWSSDFD 206
Query: 508 PT 509
T
Sbjct: 207 KT 208
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 28/203 (13%)
Query: 301 LLATGGHDKKAVLWHTDTLKSKTN-------LEEHSSLITDVRFSPSMPRLATSSFDKTV 353
LLA G D +W + +T +E H + + V +S LAT S DK+V
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 354 RVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSCT 408
+W+ D G + HS V + +HP+ + L+ S D +R W ++ C
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDDWECV 190
Query: 409 RVFKGGTAQMR---FQPHLG--RYLAAAAENVVSIL--------DAETQACRLSL-QGHT 454
V G + F G R + + ++ V + D + C L H
Sbjct: 191 AVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 455 KPIDSVCWDPSGELLASVSEDSV 477
+ + +V W +G L+ASV D V
Sbjct: 251 RQVYNVAWGFNG-LIASVGADGV 272
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + VMS+D K +I S D I+ W+I G C G
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 414 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+Q+R P+ ++A + +V + GH I+++ P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
L+AS +D + +W + + + ++ LS F S F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 90/252 (35%), Gaps = 69/252 (27%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD------------------------ 386
++VW G L T +GH+ V + PN+ DD
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 387 ---------------------LICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRF 420
LI S DGEI W N + + +AQ + F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW---NLAAKKAMYTLSAQDEVFSLAF 245
Query: 421 QPHLGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPID----SVCWDPSGE-LLA 470
P+ RY LAAA + + + Q R G++K + S+ W G+ L A
Sbjct: 246 SPN--RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 471 SVSEDSVRVWTV 482
+++ +RVW V
Sbjct: 304 GYTDNVIRVWQV 315
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 21/226 (9%)
Query: 358 ADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSCTRVF 411
A N LR T GH+ V SL + +L+ S D + W + G R F
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 412 KGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
KG + ++ L+A+ + + + D T GH + SV D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 469 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP------SLLVIGCYQS 521
+ S S D +++VWT+ +G+C+ L + + P +++ G +
Sbjct: 122 IISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 522 LELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++ WN+++ + H I L S + +ASA D + LW
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + VMS+D K +I S D I+ W+I G C G
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 414 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+Q+R P+ ++A + +V + GH I+++ P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
L+AS +D + +W + + + ++ LS F S F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 57/263 (21%)
Query: 317 DTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDKTVRVW----DADNPGYSLRTFMGH 371
+ L + LE H+ +T + S P L S S DKT+ W D G +R+F GH
Sbjct: 5 EVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 64
Query: 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431
S H +D C+ DG L+A+
Sbjct: 65 S--------HIVQD---CTLTADG-----------------------------AYALSAS 84
Query: 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490
+ + + D T GH + SV D ++ S S D +++VWT+ +G+C
Sbjct: 85 WDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQC 140
Query: 491 VHELSCNGNKFHSCVFHPTYP------SLLVIGCYQSLELWNMSENKTMT-LTAHEGLIA 543
+ L + + P +++ G + ++ WN+++ + H I
Sbjct: 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNIN 200
Query: 544 ALAVSTETGYVASASHDKFVKLW 566
L S + +ASA D + LW
Sbjct: 201 TLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + VMS+D K +I S D I+ W+I G C G
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDID-KKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 414 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+Q+R P+ ++A + +V + GH I+++ P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
L+AS +D + +W + + + ++ LS F S F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 90/252 (35%), Gaps = 69/252 (27%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 130
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD------------------------ 386
++VW G L T +GH+ V + PN+ DD
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 188
Query: 387 ---------------------LICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRF 420
LI S DGEI W N + + +AQ + F
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW---NLAAKKAMYTLSAQDEVFSLAF 245
Query: 421 QPHLGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPID----SVCWDPSGE-LLA 470
P+ RY LAAA + + + Q R G++K + S+ W G+ L A
Sbjct: 246 SPN--RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303
Query: 471 SVSEDSVRVWTV 482
+++ +RVW V
Sbjct: 304 GYTDNVIRVWQV 315
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 21/226 (9%)
Query: 358 ADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSCTRVF 411
A N LR T GH+ V SL + +L+ S D + W + G R F
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 412 KGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
KG + ++ L+A+ + + + D T GH + SV D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 469 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP------SLLVIGCYQS 521
+ S S D +++VWT+ +G+C+ L + + P +++ G +
Sbjct: 122 IISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 522 LELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++ WN+++ + H I L S + +ASA D + LW
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K ++SV A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 264 KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 323
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
++SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 324 QWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWN 383
Query: 382 PNKDDLICSCDGDGEIRYWSI 402
PN+ +ICS D ++ W +
Sbjct: 384 PNEPWVICSVSEDNIMQVWQM 404
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 83/191 (43%), Gaps = 35/191 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K ++W T +T K +++ H++ + + F+P S LAT S DKTV +W
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 301
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L +F H + + + P+ + ++ S D + W ++ K G
Sbjct: 302 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS--------KIGEE 353
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL--QGHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 354 Q-------------------SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 394
Query: 474 EDSV-RVWTVG 483
ED++ +VW +
Sbjct: 395 EDNIMQVWQMA 405
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 97/258 (37%), Gaps = 54/258 (20%)
Query: 328 HSSLITDVRFSPSMP-RLATSSFDKTVRVWDAD------------NPGYSLRTFMGHSAS 374
H + R+ P P +AT + V V+D NP LR GH
Sbjct: 123 HEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLR---GHQKE 179
Query: 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434
L ++PN + S D I W I + V K G
Sbjct: 180 GYGLSWNPNLSGHLLSASDDHTICLWDI-----SAVPKEG-------------------- 214
Query: 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VRVWTVGSGSEGECVH 492
++DA+T GHT ++ V W E L SV++D + +W S + + H
Sbjct: 215 --KVVDAKT-----IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSH 267
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTLTAHEGLIAALAVST 549
+ + + + F+P +L G +++ LW++ + K + +H+ I + S
Sbjct: 268 SVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSP 327
Query: 550 ETGYV-ASASHDKFVKLW 566
+ AS+ D+ + +W
Sbjct: 328 HNETILASSGTDRRLNVW 345
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + VMS+D K +I S D I+ W+I G C G
Sbjct: 92 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 414 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+Q+R P+ ++A + +V + GH I+++ P G
Sbjct: 149 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 208
Query: 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
L+AS +D + +W + + + ++ LS F S F P
Sbjct: 209 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 247
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 21/226 (9%)
Query: 358 ADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSCTRVF 411
A N LR T GH+ V SL + +L+ S D + W + G R F
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 412 KGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
KG + ++ L+A+ + + + D T GH + SV D +
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 469 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP------SLLVIGCYQS 521
+ S S D +++VWT+ +G+C+ L + + P +++ G +
Sbjct: 122 IISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 522 LELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++ WN+++ + H I L S + +ASA D + LW
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 22/223 (9%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 26 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 85
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + VMS+D K +I S D I+ W+I G C G
Sbjct: 86 WDV-ATGETYQRFVGHKSDVMSVDI-DKKASMIISGSRDKTIKVWTI-KGQCLATLLGHN 142
Query: 414 -GTAQMRFQPHLG------RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
+Q+R P+ ++A + +V + GH I+++ P G
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
L+AS +D + +W + + + ++ LS F S F P
Sbjct: 203 TLIASAGKDGEIMLWNLAA---KKAMYTLSAQDEVF-SLAFSP 241
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 90/252 (35%), Gaps = 69/252 (27%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT 124
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD------------------------ 386
++VW G L T +GH+ V + PN+ DD
Sbjct: 125 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI 182
Query: 387 ---------------------LICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-----MRF 420
LI S DGEI W N + + +AQ + F
Sbjct: 183 EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW---NLAAKKAMYTLSAQDEVFSLAF 239
Query: 421 QPHLGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPID----SVCWDPSGE-LLA 470
P+ RY LAAA + + + Q R G++K + S+ W G+ L A
Sbjct: 240 SPN--RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 297
Query: 471 SVSEDSVRVWTV 482
+++ +RVW V
Sbjct: 298 GYTDNVIRVWQV 309
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 95/255 (37%), Gaps = 57/255 (22%)
Query: 325 LEEHSSLITDVRFSPSMPRLATS-SFDKTVRVW----DADNPGYSLRTFMGHSASVMSLD 379
LE H+ +T + S P L S S DKT+ W D G +R+F GHS
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHS------- 59
Query: 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439
H +D C+ DG L+A+ + + +
Sbjct: 60 -HIVQD---CTLTADG-----------------------------AYALSASWDKTLRLW 86
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498
D T GH + SV D ++ S S D +++VWT+ +G+C+ L +
Sbjct: 87 DVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTI----KGQCLATLLGHN 142
Query: 499 NKFHSCVFHPTYP------SLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTET 551
+ P +++ G + ++ WN+++ + H I L S +
Sbjct: 143 DWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG 202
Query: 552 GYVASASHDKFVKLW 566
+ASA D + LW
Sbjct: 203 TLIASAGKDGEIMLW 217
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 7/127 (5%)
Query: 446 CRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRV-WTVGSGSE--GECVHELSCNGNK 500
R +L+GH + S+ +G+ LL S S D + W + + G V + +
Sbjct: 3 LRGTLEGHNGWVTSLA-TSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASH 559
C L ++L LW+++ +T H+ + ++ + + + S S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR 121
Query: 560 DKFVKLW 566
DK +K+W
Sbjct: 122 DKTIKVW 128
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 272 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 331
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
++SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 332 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 391
Query: 382 PNKDDLICSCDGDGEIRYWSI 402
PN+ +ICS D ++ W +
Sbjct: 392 PNEPWIICSVSEDNIMQVWQM 412
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 35/191 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L +F H + + + P+ + ++ S D + W ++ K G
Sbjct: 310 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 361
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 362 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 402
Query: 474 EDSV-RVWTVG 483
ED++ +VW +
Sbjct: 403 EDNIMQVWQMA 413
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 420
P LR GH L ++PN + + S D I W IN
Sbjct: 177 PDLRLR---GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN----------------- 216
Query: 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VR 478
A E+ ++DA+ GHT ++ V W E L SV++D +
Sbjct: 217 --------ATPKEH--RVIDAKN-----IFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 261
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTL 535
+W + + + H + + + + F+P +L G +++ LW++ + K +
Sbjct: 262 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 321
Query: 536 TAHEGLIAALAVSTETGYV-ASASHDKFVKLW 566
+H+ I + S + AS+ D+ + +W
Sbjct: 322 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 14/229 (6%)
Query: 271 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLW------HTDTLKSKTN 324
V F+ + ++V + V+ C ++ G +A GG D K ++ + + K +
Sbjct: 90 VWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKS 149
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
+ H++ ++ F+ S ++ T+S D T +WD ++ G L++F GH A V+ LD P++
Sbjct: 150 VAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-GQLLQSFHGHGADVLCLDLAPSE 208
Query: 385 D-DLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAAENVVSILD 440
+ S D + W + +G C + F + +R+ P + + + + + D
Sbjct: 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYD 268
Query: 441 --AETQACRLSLQGHTKPIDSVCWDPSGELL-ASVSEDSVRVWTVGSGS 486
A+ + S + SV + SG LL A ++ ++ VW V GS
Sbjct: 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGS 317
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/306 (19%), Positives = 126/306 (41%), Gaps = 18/306 (5%)
Query: 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD 334
F K +++ +KV+C + D + + + D K ++W + T + + + +
Sbjct: 52 FVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMA 111
Query: 335 VRFSPSMPRLATSSFDKTVRVW-----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389
++PS +A D V+ +N ++ H+ + + F N D I
Sbjct: 112 CAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF-TNSDMQIL 170
Query: 390 SCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHL--GRYLAAAAENVVSILDAETQ 444
+ GDG W + +G + F G A + P +++ + + D +
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHS 503
C + + H ++SV + PSG+ AS S+D + R++ + + E V S F +
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADRE---VAIYSKESIIFGA 287
Query: 504 CVFHPTYPSLLVIGCYQ--SLELWNMSE-NKTMTLTAHEGLIAALAVSTETGYVASASHD 560
+ L+ Y ++ +W++ + ++ L HE ++ L VS + S S D
Sbjct: 288 SSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWD 347
Query: 561 KFVKLW 566
+++W
Sbjct: 348 HTLRVW 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 270 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 329
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
++SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 330 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 389
Query: 382 PNKDDLICSCDGDGEIRYWSI 402
PN+ +ICS D ++ W +
Sbjct: 390 PNEPWIICSVSEDNIMQVWQM 410
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 35/193 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L +F H + + + P+ + ++ S D + W ++ K G
Sbjct: 308 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 359
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 360 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 400
Query: 474 EDSV-RVWTVGSG 485
ED++ +VW +
Sbjct: 401 EDNIMQVWQMAEN 413
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 420
P LR GH L ++PN + + S D I W IN
Sbjct: 175 PDLRLR---GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN----------------- 214
Query: 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VR 478
A E+ ++DA+ GHT ++ V W E L SV++D +
Sbjct: 215 --------ATPKEH--RVIDAKN-----IFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 259
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTL 535
+W + + + H + + + + F+P +L G +++ LW++ + K +
Sbjct: 260 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 319
Query: 536 TAHEGLIAALAVSTETGYV-ASASHDKFVKLW 566
+H+ I + S + AS+ D+ + +W
Sbjct: 320 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K +++V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 268 KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQV 327
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
++SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWN 387
Query: 382 PNKDDLICSCDGDGEIRYWSI 402
PN+ +ICS D ++ W +
Sbjct: 388 PNEPWIICSVSEDNIMQVWQM 408
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 35/193 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K ++W T +T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L +F H + + + P+ + ++ S D + W ++ K G
Sbjct: 306 DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLS--------KIGEE 357
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 358 Q-------------------STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398
Query: 474 EDSV-RVWTVGSG 485
ED++ +VW +
Sbjct: 399 EDNIMQVWQMAEN 411
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 41/212 (19%)
Query: 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 420
P LR GH L ++PN + + S D I W IN
Sbjct: 173 PDLRLR---GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDIN----------------- 212
Query: 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VR 478
A E+ ++DA+ GHT ++ V W E L SV++D +
Sbjct: 213 --------ATPKEH--RVIDAKN-----IFTGHTAVVEDVAWHLLHESLFGSVADDQKLM 257
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTL 535
+W + + + H + + + + F+P +L G +++ LW++ + K +
Sbjct: 258 IWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 317
Query: 536 TAHEGLIAALAVSTETGYV-ASASHDKFVKLW 566
+H+ I + S + AS+ D+ + +W
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K ++ V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
+SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 382 PNKDDLICSCDGDGEIRYWSI 402
PN+ +ICS D ++ W +
Sbjct: 386 PNEPWVICSVSEDNIMQIWQM 406
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K ++W T T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L TF H + + + P+ + ++ S D + W ++ K G
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS--------KIGEE 355
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 356 Q-------------------SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 474 EDSV-RVWTVG 483
ED++ ++W +
Sbjct: 397 EDNIMQIWQMA 407
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 54/258 (20%)
Query: 328 HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD------------NPGYSLRTFMGHSAS 374
H + R+ P P + AT + V V+D NP LR GH
Sbjct: 125 HEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLR---GHQKE 181
Query: 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434
L ++ N + S D + W IN G P G+ + A A
Sbjct: 182 GYGLSWNSNLSGHLLSASDDHTVCLWDINAG----------------PKEGKIVDAKA-- 223
Query: 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VRVWTVGSGSEGECVH 492
GH+ ++ V W E L SV++D + +W S + + H
Sbjct: 224 --------------IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSH 269
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTLTAHEGLIAALAVST 549
+ + + + F+P +L G +++ LW++ + K T +H+ I + S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 550 ETGYV-ASASHDKFVKLW 566
+ AS+ D+ + +W
Sbjct: 330 HNETILASSGTDRRLNVW 347
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 110/253 (43%), Gaps = 30/253 (11%)
Query: 298 DGKLLATGGHDKKAVLWHTDTLKSK-------TNLEEHSSLITDVRFSPSMPRLATSSFD 350
D +L +G DK ++W + L H+ ++D+ S +SS+D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-------- 402
KT+R+WD G + + F+GH + V S+ F P+ + I S + EI+ W+I
Sbjct: 98 KTLRLWDL-RTGTTYKRFVGHQSEVYSVAFSPD-NRQILSAGAEREIKLWNILGECKFSS 155
Query: 403 -------NNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 455
+ SC R + + QP + + + + + + Q R + + H
Sbjct: 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHES 214
Query: 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514
++ + P+G+ +A+ +D + +W + + + + E G+ + F+P +
Sbjct: 215 NVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ--REFDA-GSTINQIAFNPKL-QWV 270
Query: 515 VIGCYQSLELWNM 527
+G Q ++++N+
Sbjct: 271 AVGTDQGVKIFNL 283
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 97/268 (36%), Gaps = 70/268 (26%)
Query: 325 LEEHSSLITDV------RFSPSMPRLATSSFDKTVRVW---DADNPGY---SLRTFMGHS 372
LE HS +T + + + P L + S DKTV +W + + GY + GH+
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA 432
V L ++ S D +R W + G+ + F
Sbjct: 77 HFVSDLAL-SQENCFAISSSWDKTLRLWDLRTGTTYKRF--------------------- 114
Query: 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECV 491
GH + SV + P ++L++ +E +++W + GEC
Sbjct: 115 ------------------VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LGECK 152
Query: 492 HELSCNGNK--FHSCV-----------FHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH 538
+ N + SCV P P +G L++WN + T AH
Sbjct: 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAH 212
Query: 539 EGLIAALAVSTETGYVASASHDKFVKLW 566
E + L++S Y+A+ DK + +W
Sbjct: 213 ESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDV 335
+F+ + +A S V S +GK +ATGG DKK ++W L + S I +
Sbjct: 202 NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQI 261
Query: 336 RFSPSMPRLATSSFDKTVRVWD 357
F+P + +A + D+ V++++
Sbjct: 262 AFNPKLQWVAVGT-DQGVKIFN 282
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 385
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 386 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 436
++ SC DG++ W NG ++ V +++ PH Y L A+++ V
Sbjct: 70 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPLLLVASSDGKV 127
Query: 437 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 475
S+++ + + + H ++S W P A++ ED
Sbjct: 128 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 163
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 299 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS-PSM-PRLATSSFDKTVR 354
GK LAT DK ++ + T K L H + V ++ P LA+ S+D V
Sbjct: 23 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 355 VWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCTRV 410
+W +N +S + HSASV S+ + P++ L+ S DG + + N + +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142
Query: 411 FKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRLSL 450
G + P H G +++ A+N+V I DA+T +L
Sbjct: 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 202
Query: 451 QGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 481
+GH+ + V W P+ L LASVS+D + +WT
Sbjct: 203 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 296 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 348
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 169 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 228
Query: 349 FDKTVRVWDADN 360
D+T +W DN
Sbjct: 229 QDRTCIIWTQDN 240
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 385
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 386 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 436
++ SC DG++ W NG ++ V +++ PH Y L A+++ V
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPLLLVASSDGKV 125
Query: 437 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 475
S+++ + + + H ++S W P A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 36/217 (16%)
Query: 299 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPR----LATSSFDKT 352
GK LAT DK ++ + T K L H + V ++ P+ LA+ S+D
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA--HPKFGTILASCSYDGK 78
Query: 353 VRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCT 408
V +W +N +S + HSASV S+ + P++ L+ S DG + + N +
Sbjct: 79 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138
Query: 409 RVFKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRL 448
+ G + P H G +++ A+N+V I DA+T
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 198
Query: 449 SLQGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 481
+L+GH+ + V W P+ L LASVS+D + +WT
Sbjct: 199 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 296 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 348
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 349 FDKTVRVWDADN 360
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDV 335
K ++ V A T++V C F+ + +LATG DK LW LK K + E H I V
Sbjct: 266 KPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQV 325
Query: 336 RFSP-SMPRLATSSFDKTVRVWD-------------ADNPGYSLRTFMGHSASVMSLDFH 381
+SP + LA+S D+ + VWD D P L GH+A + ++
Sbjct: 326 HWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWN 385
Query: 382 PNKDDLICSCDGDGEIRYW 400
PN+ +ICS D + W
Sbjct: 386 PNEPWVICSVSEDNIXQIW 404
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 301 LLATGGHDKKAVLWHT---DTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVW 356
L + D+K +W T T K ++ H++ + + F+P S LAT S DKTV +W
Sbjct: 244 LFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 303
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416
D N L TF H + + + P+ + ++ S D + W ++ K G
Sbjct: 304 DLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS--------KIGEE 355
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGE-LLASVS 473
Q S DAE L GHT I W+P+ ++ SVS
Sbjct: 356 Q-------------------SAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 474 EDSV-RVW 480
ED++ ++W
Sbjct: 397 EDNIXQIW 404
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 55/258 (21%), Positives = 96/258 (37%), Gaps = 54/258 (20%)
Query: 328 HSSLITDVRFSPSMPRL-ATSSFDKTVRVWDAD------------NPGYSLRTFMGHSAS 374
H + R+ P P + AT + V V+D NP LR GH
Sbjct: 125 HEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLR---GHQKE 181
Query: 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434
L ++ N + S D + W IN G P G+
Sbjct: 182 GYGLSWNSNLSGHLLSASDDHTVCLWDINAG----------------PKEGK-------- 217
Query: 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VRVWTVGSGSEGECVH 492
I+DA + GH+ ++ V W E L SV++D + +W S + + H
Sbjct: 218 ---IVDA-----KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSH 269
Query: 493 ELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNMS--ENKTMTLTAHEGLIAALAVST 549
+ + + + F+P +L G +++ LW++ + K T +H+ I + S
Sbjct: 270 LVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSP 329
Query: 550 ETGYV-ASASHDKFVKLW 566
+ AS+ D+ + +W
Sbjct: 330 HNETILASSGTDRRLNVW 347
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 32/228 (14%)
Query: 301 LLATGGHDKKAVLWHTDTLKSK-----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
LL + DK + W K + + HS ++ D + ++S+DKT+R+
Sbjct: 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-- 413
WD G + + F+GH + V S+D K I S D I+ W+I G C G
Sbjct: 92 WDV-ATGETYQRFVGHKSDVXSVDID-KKASXIISGSRDKTIKVWTI-KGQCLATLLGHN 148
Query: 414 -GTAQMRFQPHLGRYLAAAAENVVSIL----DAETQACRLS-------LQGHTKPIDSVC 461
+Q+R P+ A ++ V+I+ D +A L+ GH I+++
Sbjct: 149 DWVSQVRVVPN-----EKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 462 WDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508
P G L+AS +D + +W + + + + LS F S F P
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAA---KKAXYTLSAQDEVF-SLAFSP 247
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 90/253 (35%), Gaps = 63/253 (24%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352
C ++DG + DK LW T ++ H S + V + + S DKT
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKT 130
Query: 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DD------------------------ 386
++VW G L T +GH+ V + PN+ DD
Sbjct: 131 IKVWTI--KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI 188
Query: 387 ---------------------LICSCDGDGEIRYWSI--NNGSCTRVFKGGTAQMRFQPH 423
LI S DGEI W++ T + + F P+
Sbjct: 189 EADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPN 248
Query: 424 LGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPID----SVCWDPSGE-LLASVS 473
RY LAAA + + + Q R G++K + S+ W G+ L A +
Sbjct: 249 --RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 474 EDSVRVWTVGSGS 486
++ +RVW V + +
Sbjct: 307 DNVIRVWQVXTAN 319
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 21/226 (9%)
Query: 358 ADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GSCTRVF 411
A N LR T GH+ V SL + +L+ S D + W + G R F
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSF 61
Query: 412 KGGTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGEL 468
KG + ++ L+A+ + + + D T GH + SV D
Sbjct: 62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 469 LASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP------SLLVIGCYQS 521
+ S S D +++VWT+ +G+C+ L + + P +++ G +
Sbjct: 122 IISGSRDKTIKVWTI----KGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 522 LELWNMSENKTMT-LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
++ WN+++ + H I L S + +ASA D + LW
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 385
H+ LI D RLAT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 386 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 436
++ SC DG++ W NG ++ V +++ PH Y L A+++ V
Sbjct: 68 TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPLLLVASSDGKV 125
Query: 437 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 475
S+++ + + + H ++S W P A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 32/215 (14%)
Query: 299 GKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFS-PSM-PRLATSSFDKTVR 354
GK LAT DK ++ + T K L H + V ++ P LA+ S+D V
Sbjct: 21 GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 355 VWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRYWSINNGSCTRV 410
+W +N +S + HSASV S+ + P++ L+ S DG + + N + +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 140
Query: 411 FKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL----DAETQACRLSL 450
G + P H G +++ A+N+V I DA+T +L
Sbjct: 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL 200
Query: 451 QGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 481
+GH+ + V W P+ L LASVS+D + +WT
Sbjct: 201 EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 296 SSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSM---PRLATSS 348
+ + + TGG D +W + T ++ LE HS + DV +SP++ LA+ S
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 349 FDKTVRVWDADN 360
D+T +W DN
Sbjct: 227 QDRTCIIWTQDN 238
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
S G ++ +G +D ++W +K L H+ I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRI 336
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
WD +N G + T GH+A V L D + S DG IR W N+ S
Sbjct: 337 WDLEN-GELMYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 121/276 (43%), Gaps = 43/276 (15%)
Query: 322 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380
+T L H +S+IT ++F + + T + DK +RV+D+ N + L+ GH V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-----QPHLGRYLAAAAENV 435
++ S D +R W I G CT VF+G + +R ++ + + +N
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 436 VSILD-----------------------AETQACRLSLQGHTKPIDSVCWDPSGELLASV 472
+ + E L+GH + +V G ++ S
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSG 286
Query: 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531
S D ++ VW V ++ +C++ LS + ++ +S ++ + ++ +W++ +
Sbjct: 287 SYDNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343
Query: 532 TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
M TL H L+ L +S + ++ SA+ D ++ W
Sbjct: 344 LMYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGW 377
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403
+ + S+D T+ VWD L GH+ + S + + I S D IR W +
Sbjct: 283 VVSGSYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHERKRCI-SASMDTTIRIWDLE 340
Query: 404 NGSCTRVFKGGTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462
NG +G TA + ++L +AAA+ + DA + + S HT +
Sbjct: 341 NGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTF 399
Query: 463 DPSGELLASVSEDSVRVWTVGSG 485
S +L S SE+ ++ + SG
Sbjct: 400 YVSDNILVSGSENQFNIYNLRSG 422
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 20/161 (12%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 385
H+ +I D R+AT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 386 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 436
++ SC DG++ W NG ++ V +++ PH Y L A+++ V
Sbjct: 68 TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPMLLVASSDGKV 125
Query: 437 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 475
S+++ + + + H ++S W P A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 28/166 (16%)
Query: 344 LATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRY 399
LA+ S+D V +W +N +S + HSASV S+ + P++ L+ S DG +
Sbjct: 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVE 129
Query: 400 WSINNGSCTRVFKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL---- 439
+ N + + G + P H G +++ A+N+V I
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 481
DA+T +L+GH+ + V W P+ L +ASVS+D + +WT
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 120/276 (43%), Gaps = 43/276 (15%)
Query: 322 KTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDF 380
+T L H +S+IT ++F + + T + DK +RV+D+ N + L+ GH V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF-----QPHLGRYLAAAAENV 435
++ S D +R W I G CT VF+G + +R ++ + + +N
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 436 VSILD-----------------------AETQACRLSLQGHTKPIDSVCWDPSGELLASV 472
+ + E L+GH + +V G ++ S
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSG 286
Query: 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531
S D ++ VW V ++ +C++ LS + ++ +S ++ + ++ +W++ +
Sbjct: 287 SYDNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGE 343
Query: 532 -TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
TL H L+ L +S + ++ SA+ D ++ W
Sbjct: 344 LXYTLQGHTALVGLLRLSDK--FLVSAAADGSIRGW 377
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355
S G ++ +G +D ++W K L H+ I + R ++S D T+R+
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRI 336
Query: 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406
WD +N G T GH+A V L D + S DG IR W N+ S
Sbjct: 337 WDLEN-GELXYTLQGHTALVGLLRL---SDKFLVSAAADGSIRGWDANDYS 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403
+ + S+D T+ VWD L GH+ + S + + I S D IR W +
Sbjct: 283 VVSGSYDNTLIVWDVAQXK-CLYILSGHTDRIYSTIYDHERKRCI-SASXDTTIRIWDLE 340
Query: 404 NGSCTRVFKGGTAQMRFQPHLGRYL-AAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462
NG +G TA + ++L +AAA+ + DA + + S HT +
Sbjct: 341 NGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTF 399
Query: 463 DPSGELLASVSEDSVRVWTVGSG 485
S +L S SE+ ++ + SG
Sbjct: 400 YVSDNILVSGSENQFNIYNLRSG 422
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 28/195 (14%)
Query: 299 GKLLATGGHDKKAV-LWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353
G L+A+ D AV LW D + SK EH +++ V S + + S D +
Sbjct: 95 GILVAS---DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151
Query: 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413
+VWD L ++ H+A V + P+KD + SC D I W TR K
Sbjct: 152 KVWDLAQ-QVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWD------TRCPKP 204
Query: 414 GT-----------AQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVC 461
+ + + P EN VS++D ++ +C LS H++ + +
Sbjct: 205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264
Query: 462 WDP-SGELLASVSED 475
+ P S LAS+SED
Sbjct: 265 FSPHSVPFLASLSED 279
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 521 SLELWNMSENKTMTLTA-----HEGLIAALAVSTETGYVASASHDKFVKLW 566
++ELW + EN+T+ ++ H+ +++ ++V + S S D +K+W
Sbjct: 104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVW 154
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 28/289 (9%)
Query: 297 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
S G +LA D LW + + +E+ I+ V + LA + V+
Sbjct: 125 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 183
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+WD LR HSA V SL ++ ++ S G I + + G
Sbjct: 184 LWDVQQQK-RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 415 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQ---GHTKPIDSVCWDP- 464
+Q +R+ P GR+LA+ +N+V++ A + + LQ H + +V W P
Sbjct: 240 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 298
Query: 465 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 519
+LA+ S+ +R+W V SG+ C+ + + ++ S ++ P Y L+ +
Sbjct: 299 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 354
Query: 520 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
L +W + K L H + +L +S + VASA+ D+ ++LW+
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 288 SKVIC-CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
S+ +C ++ DG+ LA+GG+D +W PS P
Sbjct: 241 SQEVCGLRWAPDGRHLASGGNDNLVNVW------------------------PSAP---- 272
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINN 404
+ L+TF H +V ++ + P + +++ + G D IR W++ +
Sbjct: 273 -----------GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 321
Query: 405 GSCTRVFKGGT--AQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSLQGHTKPIDSV 460
G+C + + + PH ++ A+N + I T A L+GHT + S+
Sbjct: 322 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 381
Query: 461 CWDPSGELLASVSED-SVRVW 480
P G +AS + D ++R+W
Sbjct: 382 TMSPDGATVASAAADETLRLW 402
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/312 (20%), Positives = 131/312 (41%), Gaps = 28/312 (8%)
Query: 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341
+++ + KV ++ + + + D + ++W+ T + ++ H + + F+P+
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 342 PRLATSSFDKTVRVWD----ADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395
+A D +++ AD G R GH S + P+++ + + GD
Sbjct: 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQ 180
Query: 396 EIRYWSINNGSCTRVF-----KGGTAQMRFQP----HLGRYLAAAAENVVSILDAE--TQ 444
W + G +F G TA + + +++ + + V + D ++
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR 240
Query: 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH-ELSCNGNKFH 502
A R + GH I+SV + P G+ + S+D + R++ + +G + + + E N N+
Sbjct: 241 AVR-TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299
Query: 503 --SCVFHPTYPSLLVIG-----CY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYV 554
+ V LL G CY L M N +HEG I+ L +S++ +
Sbjct: 300 IVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSAL 359
Query: 555 ASASHDKFVKLW 566
+ S DK +K+W
Sbjct: 360 CTGSWDKNLKIW 371
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 40/260 (15%)
Query: 331 LITDV-RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389
L TDV ++S + R A S F+ T V RT GHS V SLD+ P K + I
Sbjct: 33 LDTDVEKYSKAQGRTAVS-FNPTDLV--------CCRTLQGHSGKVYSLDWTPEK-NWIV 82
Query: 390 SCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC 446
S DG + W+ T K + F P+ ++ SI + +QA
Sbjct: 83 SASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQAD 142
Query: 447 R-------LSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGSEGECVHELSCN 497
R L GH S + P E L+ + + +W V +G +S
Sbjct: 143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG------QRISIF 196
Query: 498 GNKF--------HSCVFHPTYPSLLVIG-CYQSLELWNM--SENKTMTLTAHEGLIAALA 546
G++F S + ++ + G C ++ LW++ + T HEG I ++
Sbjct: 197 GSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVK 256
Query: 547 VSTETGYVASASHDKFVKLW 566
+ + S D +L+
Sbjct: 257 FFPDGQRFGTGSDDGTCRLF 276
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 125/289 (43%), Gaps = 28/289 (9%)
Query: 297 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
S G +LA D LW + + +E+ I+ V + LA + V+
Sbjct: 114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 172
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+WD LR HSA V SL ++ ++ S G I + + G
Sbjct: 173 LWDVQQQK-RLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 415 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQ---GHTKPIDSVCWDP- 464
+Q +R+ P GR+LA+ +N+V++ A + + LQ H + +V W P
Sbjct: 229 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287
Query: 465 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 519
+LA+ S+ +R+W V SG+ C+ + + ++ S ++ P Y L+ +
Sbjct: 288 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 343
Query: 520 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
L +W + K L H + +L +S + VASA+ D+ ++LW+
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 288 SKVIC-CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
S+ +C ++ DG+ LA+GG+D +W PS P
Sbjct: 230 SQEVCGLRWAPDGRHLASGGNDNLVNVW------------------------PSAP---- 261
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINN 404
+ L+TF H +V ++ + P + +++ + G D IR W++ +
Sbjct: 262 -----------GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 310
Query: 405 GSCTRVFKGGT--AQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSLQGHTKPIDSV 460
G+C + + + PH ++ A+N + I T A L+GHT + S+
Sbjct: 311 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 370
Query: 461 CWDPSGELLASVSED-SVRVW 480
P G +AS + D ++R+W
Sbjct: 371 TMSPDGATVASAAADETLRLW 391
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 20/161 (12%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDF-HPNKD 385
H+ I D R AT S DKT+++++ + + L T GH V +D+ HP
Sbjct: 8 HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 386 DLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRY----LAAAAENVV 436
++ SC DG++ W NG ++ V +++ PH Y L A+++ V
Sbjct: 68 TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPH--EYGPXLLVASSDGKV 125
Query: 437 SILDAETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED 475
S+++ + + + H ++S W P A++ ED
Sbjct: 126 SVVEFKENGTTSPIIIDAHAIGVNSASWAP-----ATIEED 161
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 28/166 (16%)
Query: 344 LATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDD---LICSCDGDGEIRY 399
LA+ S+D V +W +N +S + HSASV S+ + P++ L+ S DG +
Sbjct: 70 LASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSVVE 129
Query: 400 WSINNGSCTRVFKG---GTAQMRFQP--------HLG-----RYLAAAAENVVSIL---- 439
+ N + + G + P H G +++ A+N+V I
Sbjct: 130 FKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGEL---LASVSED-SVRVWT 481
DA+T +L+GH+ + V W P+ L ASVS+D + +WT
Sbjct: 190 DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWT 235
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 63/159 (39%), Gaps = 44/159 (27%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SPSMPRLATSSFDK 351
C S ++ +G DK A +W +L NL+ H++ + D + S S + T+S DK
Sbjct: 108 CSLSFQDGVVISGSWDKTAKVWKEGSLV--YNLQAHNASVWDAKVVSFSENKFLTASADK 165
Query: 352 TVRVWDAD---------------------------------------NPGYSLRTFMGHS 372
T+++W D + G LRT+ GH
Sbjct: 166 TIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHE 225
Query: 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411
+ V + PN D I SC D +R WS NGS +V
Sbjct: 226 SFVYCIKLLPNGD--IVSCGEDRTVRIWSKENGSLKQVI 262
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 88/205 (42%), Gaps = 17/205 (8%)
Query: 295 FSSDGKLLATGGHDKK---AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351
+ S+ +LL GG D L+ T L H + + F + + + S+DK
Sbjct: 67 YDSEKELLLFGGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGV--VISGSWDK 124
Query: 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411
T +VW + Y+L+ H+ASV ++ + D I+ W N + F
Sbjct: 125 TAKVWKEGSLVYNLQ---AHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKVIKTF 179
Query: 412 KGGTAQMRFQPHL-----GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466
G HL G +++ + + ++ ++D T + +GH + + P+G
Sbjct: 180 SG--IHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLLPNG 237
Query: 467 ELLASVSEDSVRVWTVGSGSEGECV 491
++++ + +VR+W+ +GS + +
Sbjct: 238 DIVSCGEDRTVRIWSKENGSLKQVI 262
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 124/289 (42%), Gaps = 28/289 (9%)
Query: 297 SDGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354
S G +LA D LW + + +E+ I+ V + LA + V+
Sbjct: 34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
+WD LR HSA V SL + ++ S G I + + G
Sbjct: 93 LWDVQQQK-RLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 415 TAQ----MRFQPHLGRYLAAAA-ENVVSIL-DAETQACRLSLQ---GHTKPIDSVCWDP- 464
+Q +R+ P GR+LA+ +N+V++ A + + LQ H + +V W P
Sbjct: 149 HSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207
Query: 465 SGELLAS---VSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-- 519
+LA+ S+ +R+W V SG+ C+ + + ++ S ++ P Y L+ +
Sbjct: 208 QSNVLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQ 263
Query: 520 QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
L +W + K L H + +L +S + VASA+ D+ ++LW+
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 47/201 (23%)
Query: 288 SKVIC-CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT 346
S+ +C ++ DG+ LA+GG+D +W PS P
Sbjct: 150 SQEVCGLRWAPDGRHLASGGNDNLVNVW------------------------PSAP---- 181
Query: 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG--DGEIRYWSINN 404
+ L+TF H +V ++ + P + +++ + G D IR W++ +
Sbjct: 182 -----------GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCS 230
Query: 405 GSCTRVFKGGT--AQMRFQPHLGRYLAAA--AENVVSILDAETQACRLSLQGHTKPIDSV 460
G+C + + + PH ++ A+N + I T A L+GHT + S+
Sbjct: 231 GACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSL 290
Query: 461 CWDPSGELLASVSED-SVRVW 480
P G +AS + D ++R+W
Sbjct: 291 TMSPDGATVASAAADETLRLW 311
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 13/140 (9%)
Query: 271 VSQGFSFKE--ANSVRAST-----SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 323
V Q F KE +S+ A S + + D K + G K A+ + T K+ T
Sbjct: 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG--PKGAIFVYQITEKTPT 240
Query: 324 -NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP 382
L H I+ + F+ + L ++S D T+R+W N G S F GHS S++S +
Sbjct: 241 GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-GNSQNCFYGHSQSIVSASWV- 298
Query: 383 NKDDLICSCDGDGEIRYWSI 402
DD + SC DG +R WS+
Sbjct: 299 -GDDKVISCSMDGSVRLWSL 317
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 32/245 (13%)
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDL-ICSCDGDGEIRYWSI 402
+ T + +R+W+ G L H A ++S+ + NKD I S D + W++
Sbjct: 123 IVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKW--NKDGTHIISMDVENVTILWNV 178
Query: 403 NNGSCTRVFK---GGTAQMRFQPHLG--------------RYLAAAAENVVSILDAETQA 445
+G+ + F+ G + + + H G +++ + + + +
Sbjct: 179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT 238
Query: 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504
L GH PI + ++ + +LL S S+D ++R+W G+G+ C + S S
Sbjct: 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHS------QSI 292
Query: 505 VFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHDK 561
V VI C S+ LW++ +N + L+ +G+ I A +S + A A D
Sbjct: 293 VSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDG 352
Query: 562 FVKLW 566
V ++
Sbjct: 353 QVNVY 357
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 65/158 (41%), Gaps = 15/158 (9%)
Query: 423 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV-WT 481
H G + EN L +T A L H PI SV W+ G + S+ ++V + W
Sbjct: 118 HDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSL------------LVIGCYQSLELWNMSE 529
V SG+ + EL G + H SL ++ G ++ ++ ++E
Sbjct: 178 VISGTVMQH-FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITE 236
Query: 530 NK-TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
T L H G I+ L + + SAS D +++W
Sbjct: 237 KTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 98/269 (36%), Gaps = 67/269 (24%)
Query: 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-FMGHSASVMSLDF-HPNKD 385
H +I D + RLAT S D++V+++D N G L GH V + + HP
Sbjct: 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG 71
Query: 386 DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445
+++ SC D ++ W NG+ + +
Sbjct: 72 NILASCSYDRKVIIWREENGTWEKSHEHA------------------------------- 100
Query: 446 CRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEGEC-----VHELSCN 497
GH ++SVCW P G +LA S D ++ + T + E H + CN
Sbjct: 101 ------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCN 154
Query: 498 GNKFHSCVF------HPTYPSLLVI------GCYQSLELWNMSEN----KTMTLTAHEGL 541
+ V HP+ I GC ++LW E+ + L AH
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 542 IAALA----VSTETGYVASASHDKFVKLW 566
+ +A + T +AS S D V +W
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIW 243
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 300 KLLATGGHDKKAVLWHTD---TLKSKTNLEEHSSLITDVRFSPSM----PRLATSSFDKT 352
K A+GG D LW + K + LE HS + DV ++PS+ +A+ S D
Sbjct: 180 KRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 353 VRVWDADN 360
V +W D+
Sbjct: 240 VFIWTCDD 247
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 44/247 (17%)
Query: 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386
EHS T + SPS A+ VR+WD + L+T + + + D + +
Sbjct: 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSES 115
Query: 387 LICSCDGDGEIRY---WSINNGSCTRVFKGGTAQMR---FQPHLG-RYLAAAAENVVSIL 439
+ G+G R+ + + G+ G M F+P R ++ + +N V+I
Sbjct: 116 KRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIF 175
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 499
+ + + HTK + SV ++P G L AS +G +G V +G
Sbjct: 176 EGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS------------TGGDGTIVLYNGVDGT 223
Query: 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559
K G ++ L N+ AH G + L S + +ASAS
Sbjct: 224 K---------------TGVFEDDSLKNV---------AHSGSVFGLTWSPDGTKIASASA 259
Query: 560 DKFVKLW 566
DK +K+W
Sbjct: 260 DKTIKIW 266
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 80/196 (40%), Gaps = 14/196 (7%)
Query: 302 LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DA 358
+ +G D ++ K K+ EH+ + VR++P A++ D T+ ++ D
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 359 DNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG 414
G SL+ + HS SV L + P+ I S D I+ W++ + G
Sbjct: 223 TKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWNVATLKVEKTIPVG 280
Query: 415 T----AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470
T Q+ ++ +A ++ ++ E + GH K I ++ G+ L
Sbjct: 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF 340
Query: 471 SV-SEDSVRVWTVGSG 485
S +E + W + +G
Sbjct: 341 SADAEGHINSWDISTG 356
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRL 344
+++ FS++G L +K + + L + H++ + V +SP RL
Sbjct: 492 AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL 551
Query: 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSA-----SVMSLDFHPNKDDLICSCDGDGEIRY 399
AT S D +V VW+ + P G A SV+ L+ + I S D I++
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-----ETTIVSAGQDSNIKF 606
Query: 400 WSI 402
W++
Sbjct: 607 WNV 609
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 75/198 (37%), Gaps = 52/198 (26%)
Query: 271 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--- 327
+ +G FK ++ T V ++ DG L A+ G D VL++ +KT + E
Sbjct: 174 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN-GVDGTKTGVFEDDS 232
Query: 328 -----HSSLITDVRFSPSMPRLATSSFDKTVRVWDAD----------------------- 359
HS + + +SP ++A++S DKT+++W+
Sbjct: 233 LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292
Query: 360 -----------------NP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400
NP G + GH+ ++ +L + L S D +G I W
Sbjct: 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLF-SADAEGHINSW 351
Query: 401 SINNGSCTRVFKGGTAQM 418
I+ G RVF A M
Sbjct: 352 DISTGISNRVFPDVHATM 369
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 271 VSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315
V+ F NS T+KV C +S D LATG D ++W+
Sbjct: 520 VANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 318 TLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFM 369
L S NL+ H S IT ++F PS L +SS D +++W D NP RT +
Sbjct: 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLI 178
Query: 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411
GH A+V + ++ + S DG IR W G+ F
Sbjct: 179 GHRATVTDIAI-IDRGRNVLSASLDGTIRLWECGTGTTIHTF 219
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475
QMR R++ E + +LD+ R Q H I + + PSGE L S S+D
Sbjct: 108 QMR------RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM 161
Query: 476 SVRVWTVGSGS 486
+++W+V GS
Sbjct: 162 QLKIWSVKDGS 172
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 343
+A S++ F G+ L + D + +W + L H + +TD+
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 344 LATSSFDKTVRVWDADNPGYSLRTF 368
+ ++S D T+R+W+ G ++ TF
Sbjct: 196 VLSASLDGTIRLWEC-GTGTTIHTF 219
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400
M R + + ++V D+ N H + + L F P+ + LI S D +++ W
Sbjct: 109 MRRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLKFFPSGEALISSSQ-DMQLKIW 166
Query: 401 SINNGSCTRVFKGGTAQM 418
S+ +GS R G A +
Sbjct: 167 SVKDGSNPRTLIGHRATV 184
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 326 EEHSSLITDVRFSPSMPRLATSSFDKTVRVW---DADNPGYSLRTFMGHSASVMSLDFHP 382
+ H S IT ++F PS L +SS D +++W D NP RT +GH A+V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP----RTLIGHRATVTDIAI-I 187
Query: 383 NKDDLICSCDGDGEIRYWSINNGSCTRVF 411
++ + S DG IR W G+ F
Sbjct: 188 DRGRNVLSASLDGTIRLWECGTGTTIHTF 216
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475
QMR R++ E + +LD+ R Q H I + + PSGE L S S+D
Sbjct: 105 QMR------RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDM 158
Query: 476 SVRVWTVGSGS 486
+++W+V GS
Sbjct: 159 QLKIWSVKDGS 169
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR 343
+A S++ F G+ L + D + +W + L H + +TD+
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 344 LATSSFDKTVRVWDADNPGYSLRTF 368
+ ++S D T+R+W+ G ++ TF
Sbjct: 193 VLSASLDGTIRLWEC-GTGTTIHTF 216
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400
M R + + ++V D+ N H + + L F P+ + LI S D +++ W
Sbjct: 106 MRRFILGTTEGDIKVLDS-NFNLQREIDQAHVSEITKLKFFPSGEALISSSQ-DMQLKIW 163
Query: 401 SINNGSCTRVFKGGTAQM 418
S+ +GS R G A +
Sbjct: 164 SVKDGSNPRTLIGHRATV 181
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 34/119 (28%)
Query: 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 429
GH+A V+ + + P+ D++I S D + W I +G +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR----------------- 121
Query: 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGS 486
E V+ +L+GHTK + V W P+ + LL++ ++ + VW VG+G+
Sbjct: 122 ---EPVI------------TLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGA 165
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 328 HSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR------TFMGHSASVMSLDF 380
H++ + D+ + P +A+ S D TV VW+ + G L T GH+ V + +
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGSCT 408
HP +++ S D I W + G+
Sbjct: 140 HPTAQNVLLSAGXDNVILVWDVGTGAAV 167
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/274 (18%), Positives = 120/274 (43%), Gaps = 22/274 (8%)
Query: 308 DKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366
++ +W+ D+ E + S+ + V++S L+ + V ++D ++ LR
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQT-KLR 170
Query: 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQ---MRFQP 422
T GH A V L ++ + ++ S G I + + + +G +++ + ++
Sbjct: 171 TMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS 227
Query: 423 HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLAS---VSEDSVR 478
+ + +NVV I DA + + + H + +V W P LLA+ + +
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIH 287
Query: 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY--QSLELWNMSEN---KTM 533
W +G+ V G++ S ++ P ++ + +L +W+ S + K +
Sbjct: 288 FWNAATGARVNTVDA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQV 343
Query: 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567
+ AH+ + A+S + +++A+ D+ +K W+
Sbjct: 344 DIPAHDTRVLYSALSPDGRILSTAASDENLKFWR 377
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338
+ +++ +S+V + SDG LA+GG+D +W + K H++ + V +
Sbjct: 209 QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC 268
Query: 339 PSMPRLATS---SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-- 393
P L + + DK + W+A G + T S V SL + P+ + I S G
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAAT-GARVNTVDAGS-QVTSLIWSPHSKE-IMSTHGFP 325
Query: 394 DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431
D + WS ++ G T Q+ H R L +A
Sbjct: 326 DNNLSIWSYSS-------SGLTKQVDIPAHDTRVLYSA 356
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 34/119 (28%)
Query: 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLA 429
GH+A V+ + + P+ D++I S D + W I +G G +R
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG-------GLVLPLR---------- 121
Query: 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--LLASVSEDSVRVWTVGSGS 486
E V+ +L+GHTK + V W P+ + LL++ ++ + VW VG+G+
Sbjct: 122 ---EPVI------------TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA 165
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 328 HSSLITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLR------TFMGHSASVMSLDF 380
H++ + D+ + P +A+ S D TV VW+ + G L T GH+ V + +
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAW 139
Query: 381 HPNKDDLICSCDGDGEIRYWSINNGS 406
HP +++ S D I W + G+
Sbjct: 140 HPTAQNVLLSAGCDNVILVWDVGTGA 165
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Query: 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384
L H +T V+++ L + S D + VW + N G L T GH+ ++ S+D
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDV---- 82
Query: 385 DDLICSC---DGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVV 436
D C D I+ W ++NG C +K ++ F P G Y A +NV+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSP-CGNYFLAILDNVM 138
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 45/120 (37%)
Query: 448 LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506
+ L GH +P+ V ++ G+LL S S+D S VW S NG +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-------------YSLNGERL----- 67
Query: 507 HPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566
TL H G I ++ V T Y + S D +KLW
Sbjct: 68 --------------------------GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW 101
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 34/186 (18%)
Query: 384 KDDLICSCDGDGEIRYWSINNG----SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439
K I + DG+I + ++N + + + M+F P L ++ ++ + ++
Sbjct: 186 KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLV 245
Query: 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 499
D T + P+++ P E + +G G E + V S N
Sbjct: 246 DVSTLQVLKKYETDC-PLNTAVITPLKEFI-----------ILGGGQEAKDVTTTSANEG 293
Query: 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559
KF + +H + E + + H G + +A+S + AS
Sbjct: 294 KFEARFYHKIF------------------EEEIGRVQGHFGPLNTVAISPQGTSYASGGE 335
Query: 560 DKFVKL 565
D F++L
Sbjct: 336 DGFIRL 341
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 72/178 (40%), Gaps = 20/178 (11%)
Query: 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYL 428
H SV ++ ++P+ + S D ++ W N VF + P ++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 429 AAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSEDS-VRVWTV- 482
A V + D ++ +C LQGH + I +V W P + +LA+ S DS V++W V
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVR 217
Query: 483 -----------GSGSEGECVHELSCNGN-KFHSCVFHPTYPSLLVIGCYQSLELWNMS 528
+G + + V + N K + F LL +G + LWN S
Sbjct: 218 RASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSS 275
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 33/212 (15%)
Query: 295 FSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPR---LATSSF 349
+ D + + DK +W T+TL++ N EE + SP + +A +
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEE---TVYSHHMSPVSTKHCLVAVGTR 164
Query: 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409
V++ D + G GH ++++ + P D ++ + D ++ W + S
Sbjct: 165 GPKVQLCDLKS-GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS--- 220
Query: 410 VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 469
+ H G+ ++QA + H ++ +C+ G L
Sbjct: 221 -----GCLITLDQHNGK---------------KSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 470 ASVSEDS-VRVWTVGSGSEGECVHELSCNGNK 500
+V D+ +R+W +G + CN +K
Sbjct: 261 LTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK 292
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 409 RVFKGGTAQMRFQPHLGRY-LAAAAENVVSILDAETQA----------CRLSLQG---HT 454
R+ GG + +P GRY L+ ++ V+ + D E + C + H
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99
Query: 455 KPIDSVCWDP--SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-HPTYP 511
+++V W P +G +S + +++VW + + + F V+ H P
Sbjct: 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN--------FEETVYSHHMSP 151
Query: 512 -----SLLVIGCY-QSLELWNM-SENKTMTLTAHEGLIAALAVSTETGYV-ASASHDKFV 563
L+ +G ++L ++ S + + L H I A++ S Y+ A+AS D V
Sbjct: 152 VSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRV 211
Query: 564 KLW 566
KLW
Sbjct: 212 KLW 214
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 354
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 355 VWDADNPGYSLRTFMGHSASVMSLD---------FHPNKDDLICSCDGDGEIRYWSINNG 405
+WD LR G ++ + SL F P+ L+ + D EIR +S +
Sbjct: 277 IWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRVYSASQW 328
Query: 406 SC 407
C
Sbjct: 329 DC 330
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 332 ITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDL 387
IT ++F+P + + SS + T R+ D G LR F + SLD + +
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRL--QDFKGNILRVFASSDTINIWFCSLDVSAS-SRM 223
Query: 388 ICSCDGDGEIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAET- 443
+ + D G + +++ R+ K + P +LA A+ + V I D
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 444 --QACRLSLQGHTKPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNK 500
+A L H P+++ C+ P G LL + + +RV+ S S+ +C L + ++
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY---SASQWDCPLGLIPHPHR 340
Query: 501 FHS------CVFHPTYPSLLVIGCY 519
+HP Y +L+V+G Y
Sbjct: 341 HFQHLTPIKAAWHPRY-NLIVVGRY 364
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 354
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 218 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276
Query: 355 VWDADNPGYSLRTFMGHSASVMSLD---------FHPNKDDLICSCDGDGEIRYWSINNG 405
+WD LR G ++ + SL F P+ L+ + D EIR +S +
Sbjct: 277 IWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRVYSASQW 328
Query: 406 SC 407
C
Sbjct: 329 DC 330
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 332 ITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDL 387
IT ++F+P + + SS + T R+ D G LR F + SLD + +
Sbjct: 167 ITGLKFNPLNTNQFYASSMEGTTRL--QDFKGNILRVFASSDTINIWFCSLDVSAS-SRM 223
Query: 388 ICSCDGDGEIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAET- 443
+ + D G + +++ R+ K + P +LA A+ + V I D
Sbjct: 224 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 283
Query: 444 --QACRLSLQGHTKPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNK 500
+A L H P+++ C+ P G LL + + +RV+ S S+ +C L + ++
Sbjct: 284 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY---SASQWDCPLGLIPHPHR 340
Query: 501 FHS------CVFHPTYPSLLVIGCY 519
+HP Y +L+V+G Y
Sbjct: 341 HFQHLTPIKAAWHPRY-NLIVVGRY 364
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 19/122 (15%)
Query: 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFDKTVR 354
S+ +++ TG + +L + D K NL H +T V +P LAT+S D+TV+
Sbjct: 219 SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 277
Query: 355 VWDADNPGYSLRTFMGHSASVMSLD---------FHPNKDDLICSCDGDGEIRYWSINNG 405
+WD LR G ++ + SL F P+ L+ + D EIR +S +
Sbjct: 278 IWD-------LRQVRGKASFLYSLPHRHPVNAACFSPDGARLL-TTDQKSEIRVYSASQW 329
Query: 406 SC 407
C
Sbjct: 330 DC 331
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 332 ITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHPNKDDL 387
IT ++F+P + + SS + T R+ D G LR F + SLD + +
Sbjct: 168 ITGLKFNPLNTNQFYASSMEGTTRL--QDFKGNILRVFASSDTINIWFCSLDVSAS-SRM 224
Query: 388 ICSCDGDGEIRYWSINNGSC--TRVFKGGTAQMRFQPHLGRYLA-AAAENVVSILDAET- 443
+ + D G + +++ R+ K + P +LA A+ + V I D
Sbjct: 225 VVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQV 284
Query: 444 --QACRLSLQGHTKPIDSVCWDPSG-ELLASVSEDSVRVWTVGSGSEGECVHELSCNGNK 500
+A L H P+++ C+ P G LL + + +RV+ S S+ +C L + ++
Sbjct: 285 RGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVY---SASQWDCPLGLIPHPHR 341
Query: 501 FHS------CVFHPTYPSLLVIGCY 519
+HP Y +L+V+G Y
Sbjct: 342 HFQHLTPIKAAWHPRY-NLIVVGRY 365
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------VRFSPSMPRLA----T 346
S+ L+ATG ++ + TL+ N E S+I + V+FSP LA +
Sbjct: 205 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 264
Query: 347 SSFDKTV--------RVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDG 395
+SF R+ P +S + +G HS+ VMSL F+ + + L CS DG
Sbjct: 265 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDG 323
Query: 396 EIRYWSI 402
++R+W +
Sbjct: 324 KLRFWDV 330
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 22/127 (17%)
Query: 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITD------VRFSPSMPRLA----T 346
S+ L+ATG ++ + TL+ N E S+I + V+FSP LA +
Sbjct: 195 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 254
Query: 347 SSFDKTV--------RVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDG 395
+SF R+ P +S + +G HS+ VMSL F+ + + L CS DG
Sbjct: 255 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL-CSAGWDG 313
Query: 396 EIRYWSI 402
++R+W +
Sbjct: 314 KLRFWDV 320
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 296 SSDGKLLAT--GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353
S G L+A+ G + +L L +K EH ++ + + + D +V
Sbjct: 104 SEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSV 163
Query: 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400
+VWD L+++ HS+ V + P KD + SC DG I W
Sbjct: 164 KVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 340 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 120 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 176
Query: 398 RYWSINNGSCTRVFKG 413
R W+I + +F G
Sbjct: 177 RLWNIQTDTLVAIFGG 192
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTL----TAHEGLIA 543
+C+ +GN + FHP P+LL+ + +L LWN+ + + + H +
Sbjct: 142 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 201
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
+ + S D +KLW+
Sbjct: 202 SADYDLLGEKIMSCGMDHSLKLWR 225
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409
+A+N S+ F HS+SV ++ F+ +D+++ S +GEI W +N CT
Sbjct: 98 EANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN--KCTE 148
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDK 351
CH D LL + G D +LW+ ++ + + + +F+P P L A +SFD
Sbjct: 271 CH--QDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDN 328
Query: 352 TVRV 355
+ V
Sbjct: 329 KIEV 332
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 285 ASTSKVICCHFS-SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRF 337
+S +VI ++ S + A+ G A +W K +L S ++ V +
Sbjct: 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEW 222
Query: 338 SP-SMPRLAT---SSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCD 392
P + R+AT S D ++ +WD N L+T GH ++SLD+ + L+ S
Sbjct: 223 HPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG 282
Query: 393 GDGEIRYWS 401
D + W+
Sbjct: 283 RDNTVLLWN 291
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 340 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 79 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 135
Query: 398 RYWSINNGSCTRVFKG 413
R W+I + +F G
Sbjct: 136 RLWNIQTDTLVAIFGG 151
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTL----TAHEGLIA 543
+C+ +GN + FHP P+LL+ + +L LWN+ + + + H +
Sbjct: 101 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 160
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
+ + S D +KLW+
Sbjct: 161 SADYDLLGEKIMSCGMDHSLKLWR 184
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 340 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 84 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 140
Query: 398 RYWSINNGSCTRVFKG 413
R W+I + +F G
Sbjct: 141 RLWNIQTDTLVAIFGG 156
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTL----TAHEGLIA 543
+C+ +GN + FHP P+LL+ + +L LWN+ + + + H +
Sbjct: 106 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 165
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
+ + S D +KLW+
Sbjct: 166 SADYDLLGEKIMSCGMDHSLKLWR 189
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 340 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 83 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 398 RYWSINNGSCTRVFKG 413
R W+I + +F G
Sbjct: 140 RLWNIQTDTLVAIFGG 155
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTL----TAHEGLIA 543
+C+ +GN + FHP P+LL+ + +L LWN+ + + + H +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
+ + S D +KLW+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 340 SMPRLATSSFDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397
S P LA + +R+ NP ++ ++GH ++ L FHP +L+ S D +
Sbjct: 83 SHPLLAVAGSRGIIRI---INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHAL 139
Query: 398 RYWSINNGSCTRVFKG 413
R W+I + +F G
Sbjct: 140 RLWNIQTDTLVAIFGG 155
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 489 ECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTL----TAHEGLIA 543
+C+ +GN + FHP P+LL+ + +L LWN+ + + + H +
Sbjct: 105 QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVL 164
Query: 544 ALAVSTETGYVASASHDKFVKLWK 567
+ + S D +KLW+
Sbjct: 165 SADYDLLGEKIMSCGMDHSLKLWR 188
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 15/254 (5%)
Query: 321 SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA-SVMSLD 379
S+ + + I + P L T+ +WD P ++ + SA + +L
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 380 FHPNKDDLIC-SCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435
P D +C SC DG I W ++N + R F+G G + + + +N
Sbjct: 149 ISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206
Query: 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS-VRVWTVGSGSEGEC-VHE 493
V D + +L T I S+ + P+GE LA E S V V V + + +HE
Sbjct: 207 VRSWDLR-EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265
Query: 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGY 553
KF C + G L W ++ + + + +S + Y
Sbjct: 266 SCVLSLKFAYCG-----KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY 320
Query: 554 VASASHDKFVKLWK 567
+ + S DK +++
Sbjct: 321 IVTGSGDKKATVYE 334
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSF 349
C S+DG L TGG D W L+ L++H +S I + + P+ LA
Sbjct: 188 CIDISNDGTKLWTGGLDNTVRSW---DLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGME 244
Query: 350 DKTVRVWDADNP-GYSLRTFMGHSASVMSLDF 380
V V + P Y L H + V+SL F
Sbjct: 245 SSNVEVLHVNKPDKYQLHL---HESCVLSLKF 273
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW--S 401
+AT D + +WD + H A + + FHP+ + + +C DG + +W S
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Query: 402 INNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 437
+ + +F G F H A ++V+S
Sbjct: 312 TDVPEKSSLFHQGGRSSTFLSHSISNQANVHQSVIS 347
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 64/157 (40%), Gaps = 9/157 (5%)
Query: 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRL 344
S S C + + T G D + L+ D ++ ++ SS + V F + P +
Sbjct: 147 SYSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRT-PEI 205
Query: 345 ATSSFDKTVRVWDADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401
T + +++WD G + + G + +D HPN+ ++ + DG + W
Sbjct: 206 LTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWD 265
Query: 402 INNGSC-TRVFKGGTAQM---RFQPHLGRYLAAAAEN 434
+ G+ + K A+M F P +L +E+
Sbjct: 266 VRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSED 302
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 342 PRLATSSFDKTVRVWD---ADNPGYSLRTFMGHSA----SVMSLDFHPNKDDLICSCDGD 394
P + T S D TV+VWD D+P ++ G + +V + + ++ ++C+ +
Sbjct: 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN 189
Query: 395 GEIRYWSINNGSC--TRVFKGGTAQMRFQPH---LGRYLAAAAENVVSILDAETQ 444
G+I+ + + N + K G + F + + +A + E + D TQ
Sbjct: 190 GDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)
Query: 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD---TLKSKTNLEEHSS 330
G +K A + V C ++ + T D+ A ++ T K L +
Sbjct: 42 GNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNR 101
Query: 331 LITDVRFSPSMPRLATSSFDKTVRV---------WDADNPGYSLRTFMGHSASVMSLDFH 381
T VR+SP+ + A S + + V W + + LR+ +++SLD+H
Sbjct: 102 AATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS------TILSLDWH 155
Query: 382 PNKDDLICSC 391
PN L C
Sbjct: 156 PNNVLLAAGC 165
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF--SPSMPRL 344
T V+ +S DG + T DK A +W + ++ + +H + + + + +P+ +
Sbjct: 86 TGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA-IQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 345 ATSSFDKTVRVWD--ADNPGYSLR 366
T S+DKT++ WD + NP L+
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQ 168
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 333
G + + + ++ +V ++ D + T G D+ A +W TLK +T L
Sbjct: 39 GNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW---TLKGRTWKPTLVILRI 95
Query: 334 D-----VRFSPSMPRLATSSFDKTVRV--WDADNPGYSLRTFMGH-SASVMSLDFHPNKD 385
+ VR++P+ + A S + + + ++ +N + + ++V+SLD+HPN
Sbjct: 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 386 DLIC-SCDGDGEI 397
L SCD I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT 333
G + + + ++ +V ++ D + T G D+ A +W TLK +T L
Sbjct: 39 GNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVW---TLKGRTWKPTLVILRI 95
Query: 334 D-----VRFSPSMPRLATSSFDKTVRV--WDADNPGYSLRTFMGH-SASVMSLDFHPNKD 385
+ VR++P+ + A S + + + ++ +N + + ++V+SLD+HPN
Sbjct: 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 155
Query: 386 DLIC-SCDGDGEI 397
L SCD I
Sbjct: 156 LLAAGSCDFKCRI 168
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 47/247 (19%)
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 352
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 353 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 403
V++W+ D L T S+ S+ F P L +C G DG +R +
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 404 NGSCTRVFKGGTAQM----------------------RFQPHLGRYLAAAAENVVSILDA 441
S R + T++M RF P + +A E +
Sbjct: 143 EPSDLRSWTL-TSEMKVLSIPPANHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRG 199
Query: 442 ETQACRLS--LQGHTKPIDSVCWDPS----GELLASVSED-SVRVWTVGSGSEGECVHEL 494
+ ++ L GH I S+ W PS +L+A+ +D +R++ + E
Sbjct: 200 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 259
Query: 495 SCNGNKF 501
N N F
Sbjct: 260 LTNSNMF 266
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 47/247 (19%)
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 352
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 21 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 80
Query: 353 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSIN 403
V++W+ D L T S+ S+ F P L +C G DG +R +
Sbjct: 81 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 140
Query: 404 NGSCTRVFKGGTAQM----------------------RFQPHLGRYLAAAAENVVSILDA 441
S R + T++M RF P + +A E +
Sbjct: 141 EPSDLRSWTL-TSEMKVLSIPPANHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRG 197
Query: 442 ETQACRLS--LQGHTKPIDSVCWDPS----GELLASVSED-SVRVWTVGSGSEGECVHEL 494
+ ++ L GH I S+ W PS +L+A+ +D +R++ + E
Sbjct: 198 KDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEES 257
Query: 495 SCNGNKF 501
N N F
Sbjct: 258 LTNSNMF 264
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 93/246 (37%), Gaps = 45/246 (18%)
Query: 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEE----HSSLITDVRF-SPSMPRL-ATSSFDKT 352
G+ +AT D+ ++ D S L + H S I + + SP R+ A++S+DKT
Sbjct: 23 GRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKT 82
Query: 353 VRVWDAD--------NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---------- 394
V++W+ D L T S+ S+ F P L +C G+
Sbjct: 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142
Query: 395 --GEIRYWSINN----------GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 442
++R W++ + F RF P + +A E + +
Sbjct: 143 EPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPE--KLAVSALEQAIIYQRGK 200
Query: 443 TQACRLS--LQGHTKPIDSVCWDPS----GELLASVSED-SVRVWTVGSGSEGECVHELS 495
++ L GH I S+ W PS +L+A+ +D +R++ + E
Sbjct: 201 DGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESL 260
Query: 496 CNGNKF 501
N N F
Sbjct: 261 TNSNXF 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,095,586
Number of Sequences: 62578
Number of extensions: 586098
Number of successful extensions: 2564
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1432
Number of HSP's gapped (non-prelim): 456
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)