Query 008393
Match_columns 567
No_of_seqs 1088 out of 2629
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 23:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/008393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/008393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 9.3E-49 2E-53 366.0 26.3 284 278-567 148-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 1.4E-46 3E-51 351.4 25.9 287 278-567 106-437 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-44 3.1E-49 342.4 23.9 285 278-567 166-458 (459)
4 KOG0286 G-protein beta subunit 100.0 3.2E-42 7E-47 312.2 33.7 290 275-567 43-343 (343)
5 KOG0265 U5 snRNP-specific prot 100.0 7.1E-40 1.5E-44 298.2 28.3 286 279-565 39-334 (338)
6 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-40 3.1E-45 315.2 22.4 244 278-526 208-458 (459)
7 KOG0279 G protein beta subunit 100.0 7E-38 1.5E-42 282.5 32.1 283 278-567 6-311 (315)
8 KOG0285 Pleiotropic regulator 100.0 8.1E-39 1.8E-43 297.0 26.1 287 275-567 139-437 (460)
9 KOG0295 WD40 repeat-containing 100.0 1.9E-38 4.2E-43 295.6 24.1 288 276-567 97-404 (406)
10 KOG0315 G-protein beta subunit 100.0 2.3E-37 5.1E-42 274.6 29.1 266 300-567 11-286 (311)
11 KOG0318 WD40 repeat stress pro 100.0 2.6E-36 5.6E-41 293.3 37.2 361 202-567 59-558 (603)
12 KOG0266 WD40 repeat-containing 100.0 3.5E-36 7.6E-41 314.4 41.2 284 280-567 151-452 (456)
13 KOG0315 G-protein beta subunit 100.0 7.5E-37 1.6E-41 271.4 29.6 280 260-548 16-309 (311)
14 KOG0284 Polyadenylation factor 100.0 6.1E-39 1.3E-43 302.8 17.1 276 286-567 95-378 (464)
15 KOG0318 WD40 repeat stress pro 100.0 3E-36 6.6E-41 292.8 35.9 296 268-567 171-600 (603)
16 KOG0319 WD40-repeat-containing 100.0 3.2E-36 6.9E-41 303.5 28.8 353 204-567 107-617 (775)
17 cd00200 WD40 WD40 domain, foun 100.0 6.5E-35 1.4E-39 285.9 37.7 282 281-567 3-289 (289)
18 KOG0291 WD40-repeat-containing 100.0 3.7E-35 7.9E-40 296.0 33.5 288 275-567 295-610 (893)
19 KOG0645 WD40 repeat protein [G 100.0 8.3E-35 1.8E-39 261.6 32.0 280 278-567 5-309 (312)
20 KOG0273 Beta-transducin family 100.0 2.5E-35 5.5E-40 283.1 30.4 301 260-567 197-521 (524)
21 KOG0273 Beta-transducin family 100.0 1.8E-35 3.9E-40 284.1 28.8 281 279-567 171-480 (524)
22 KOG0279 G protein beta subunit 100.0 2.7E-35 5.9E-40 265.8 27.6 263 260-528 34-313 (315)
23 KOG0282 mRNA splicing factor [ 100.0 9.6E-37 2.1E-41 294.0 18.5 290 276-567 203-503 (503)
24 KOG0293 WD40 repeat-containing 100.0 5E-36 1.1E-40 283.2 22.2 287 274-567 211-511 (519)
25 KOG0296 Angio-associated migra 100.0 2.2E-34 4.8E-39 268.7 29.7 299 259-567 81-396 (399)
26 KOG0286 G-protein beta subunit 100.0 1.1E-33 2.3E-38 256.9 31.0 243 279-526 89-343 (343)
27 KOG0319 WD40-repeat-containing 100.0 2.4E-34 5.3E-39 290.0 29.6 352 206-567 66-575 (775)
28 KOG0291 WD40-repeat-containing 100.0 4.1E-33 9E-38 281.3 38.3 359 203-567 97-506 (893)
29 KOG0263 Transcription initiati 100.0 3.1E-34 6.8E-39 292.3 27.7 246 279-529 370-650 (707)
30 PLN00181 protein SPA1-RELATED; 100.0 7.1E-33 1.5E-37 310.5 40.9 283 282-567 478-791 (793)
31 KOG0306 WD40-repeat-containing 100.0 3E-33 6.4E-38 282.2 32.6 336 221-566 43-577 (888)
32 KOG0263 Transcription initiati 100.0 3.6E-34 7.8E-39 291.8 26.3 260 208-484 384-650 (707)
33 KOG0295 WD40 repeat-containing 100.0 6.8E-34 1.5E-38 265.3 22.7 259 261-527 127-405 (406)
34 KOG0316 Conserved WD40 repeat- 100.0 3.4E-33 7.5E-38 246.1 25.8 279 278-566 8-296 (307)
35 KOG0284 Polyadenylation factor 100.0 1.9E-34 4.1E-39 272.5 15.9 275 203-528 97-380 (464)
36 KOG0306 WD40-repeat-containing 100.0 6.4E-33 1.4E-37 279.8 27.8 278 282-567 368-662 (888)
37 KOG0281 Beta-TrCP (transducin 100.0 1.7E-34 3.7E-39 267.2 14.7 264 285-567 195-475 (499)
38 KOG0275 Conserved WD40 repeat- 100.0 8.5E-34 1.8E-38 260.3 16.5 277 285-567 211-507 (508)
39 KOG0276 Vesicle coat complex C 100.0 2.3E-32 4.9E-37 270.5 26.6 281 280-565 6-295 (794)
40 KOG0643 Translation initiation 100.0 1.8E-31 3.9E-36 239.5 28.8 279 282-566 5-314 (327)
41 KOG0276 Vesicle coat complex C 100.0 4.9E-32 1.1E-36 268.2 26.8 242 280-524 48-295 (794)
42 KOG1407 WD40 repeat protein [F 100.0 1.7E-31 3.8E-36 238.9 27.2 274 281-560 14-293 (313)
43 KOG0278 Serine/threonine kinas 100.0 1E-32 2.2E-37 245.1 18.1 279 281-567 8-295 (334)
44 KOG0296 Angio-associated migra 100.0 1.7E-31 3.7E-36 249.5 26.9 283 279-567 56-354 (399)
45 KOG0266 WD40 repeat-containing 100.0 5.4E-31 1.2E-35 275.4 30.6 258 265-528 182-454 (456)
46 KOG0285 Pleiotropic regulator 100.0 1.1E-31 2.5E-36 249.6 21.1 242 319-567 141-387 (460)
47 KOG0288 WD40 repeat protein Ti 100.0 3E-32 6.4E-37 258.1 17.4 284 278-567 166-459 (459)
48 KOG1446 Histone H3 (Lys4) meth 100.0 7.7E-30 1.7E-34 235.1 32.8 283 277-566 4-300 (311)
49 KOG0292 Vesicle coat complex C 100.0 4.2E-31 9.1E-36 270.5 27.0 280 283-566 5-318 (1202)
50 KOG0640 mRNA cleavage stimulat 100.0 5.4E-31 1.2E-35 240.8 22.2 284 279-567 104-424 (430)
51 KOG0292 Vesicle coat complex C 100.0 2.5E-30 5.4E-35 264.9 29.1 243 280-528 44-321 (1202)
52 KOG0772 Uncharacterized conser 100.0 1.3E-30 2.8E-35 253.0 25.5 291 275-566 155-484 (641)
53 KOG0281 Beta-TrCP (transducin 100.0 1.3E-31 2.9E-36 248.1 16.2 273 247-533 197-482 (499)
54 KOG0265 U5 snRNP-specific prot 100.0 7.6E-30 1.6E-34 232.8 26.7 272 205-527 50-337 (338)
55 KOG0645 WD40 repeat protein [G 100.0 1.6E-29 3.5E-34 227.5 27.2 263 259-528 32-311 (312)
56 KOG0313 Microtubule binding pr 100.0 1.3E-29 2.7E-34 238.0 26.2 276 285-567 103-416 (423)
57 cd00200 WD40 WD40 domain, foun 100.0 1.5E-28 3.2E-33 240.7 35.3 243 279-526 43-289 (289)
58 KOG0268 Sof1-like rRNA process 100.0 5.2E-31 1.1E-35 245.8 15.7 278 279-567 58-343 (433)
59 KOG0277 Peroxisomal targeting 100.0 8.5E-30 1.8E-34 227.3 22.0 275 291-567 12-307 (311)
60 KOG0316 Conserved WD40 repeat- 100.0 1.8E-29 3.8E-34 222.8 23.5 254 262-525 37-296 (307)
61 KOG0282 mRNA splicing factor [ 100.0 6.4E-31 1.4E-35 253.9 14.9 246 319-567 204-460 (503)
62 KOG0289 mRNA splicing factor [ 100.0 5.6E-29 1.2E-33 237.2 27.0 275 287-566 219-503 (506)
63 KOG0293 WD40 repeat-containing 100.0 1.2E-29 2.6E-34 240.1 22.0 259 265-529 247-514 (519)
64 KOG0283 WD40 repeat-containing 100.0 2.8E-29 6.1E-34 258.4 25.8 242 281-528 260-576 (712)
65 KOG0310 Conserved WD40 repeat- 100.0 9.9E-29 2.1E-33 239.2 26.4 276 286-565 25-305 (487)
66 PTZ00420 coronin; Provisional 100.0 1.5E-27 3.2E-32 249.7 37.2 248 305-552 50-319 (568)
67 KOG0274 Cdc4 and related F-box 100.0 1.8E-28 3.9E-33 255.7 30.1 268 285-567 206-480 (537)
68 KOG0275 Conserved WD40 repeat- 100.0 7.1E-30 1.5E-34 234.6 17.0 275 208-526 219-507 (508)
69 KOG0305 Anaphase promoting com 100.0 3.2E-28 6.9E-33 244.7 27.7 265 293-567 183-459 (484)
70 PLN00181 protein SPA1-RELATED; 100.0 2.9E-27 6.2E-32 265.3 38.3 238 287-527 532-792 (793)
71 PTZ00421 coronin; Provisional 100.0 4.8E-27 1E-31 244.8 36.1 262 288-551 21-315 (493)
72 KOG0278 Serine/threonine kinas 100.0 3.1E-29 6.7E-34 223.0 16.2 249 279-533 51-302 (334)
73 KOG0973 Histone transcription 100.0 7.6E-28 1.6E-32 253.8 29.3 278 285-566 11-352 (942)
74 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.7E-32 218.5 26.7 270 285-557 25-311 (347)
75 KOG0300 WD40 repeat-containing 100.0 2.3E-28 4.9E-33 224.2 21.6 287 276-567 137-474 (481)
76 KOG0308 Conserved WD40 repeat- 100.0 8.9E-29 1.9E-33 246.5 19.2 268 297-567 35-325 (735)
77 KOG0313 Microtubule binding pr 100.0 1.7E-27 3.8E-32 223.7 24.7 261 259-528 120-418 (423)
78 KOG0274 Cdc4 and related F-box 100.0 3.6E-27 7.9E-32 246.0 28.8 259 259-533 223-487 (537)
79 KOG0310 Conserved WD40 repeat- 100.0 5.9E-27 1.3E-31 226.9 26.4 237 287-529 68-310 (487)
80 KOG0973 Histone transcription 100.0 4.2E-27 9.1E-32 248.2 27.5 250 278-531 60-358 (942)
81 KOG0294 WD40 repeat-containing 100.0 9.9E-27 2.1E-31 213.8 26.2 264 274-547 30-305 (362)
82 KOG2096 WD40 repeat protein [G 100.0 9.7E-27 2.1E-31 213.9 26.0 283 280-566 79-399 (420)
83 KOG0641 WD40 repeat protein [G 100.0 2.1E-25 4.6E-30 195.7 32.8 288 275-566 21-346 (350)
84 PTZ00421 coronin; Provisional 100.0 1.1E-25 2.3E-30 234.8 36.5 224 281-509 69-314 (493)
85 KOG1539 WD repeat protein [Gen 100.0 2.1E-26 4.6E-31 235.5 29.6 337 221-566 182-645 (910)
86 KOG0641 WD40 repeat protein [G 100.0 1.9E-25 4.2E-30 196.0 30.7 247 279-528 81-349 (350)
87 KOG1407 WD40 repeat protein [F 100.0 5.8E-27 1.3E-31 210.0 21.4 239 323-565 14-257 (313)
88 KOG0288 WD40 repeat protein Ti 100.0 1.5E-27 3.3E-32 226.3 18.6 258 259-525 192-458 (459)
89 KOG0277 Peroxisomal targeting 100.0 5.7E-27 1.2E-31 209.2 20.9 246 278-527 52-308 (311)
90 KOG1408 WD40 repeat protein [F 100.0 1.1E-26 2.3E-31 233.3 24.6 347 220-567 279-711 (1080)
91 KOG0305 Anaphase promoting com 100.0 1.8E-26 4E-31 232.1 26.4 237 287-530 217-463 (484)
92 KOG0283 WD40 repeat-containing 100.0 8.7E-27 1.9E-31 240.1 24.2 244 320-567 257-574 (712)
93 KOG1036 Mitotic spindle checkp 100.0 1E-25 2.2E-30 206.9 27.5 269 286-559 12-294 (323)
94 KOG0294 WD40 repeat-containing 99.9 1.4E-25 3.1E-30 206.2 25.6 256 302-567 4-279 (362)
95 KOG0299 U3 snoRNP-associated p 99.9 1.1E-25 2.4E-30 216.6 25.6 271 280-557 135-443 (479)
96 PTZ00420 coronin; Provisional 99.9 1.3E-24 2.8E-29 227.6 34.5 243 260-510 50-318 (568)
97 KOG1446 Histone H3 (Lys4) meth 99.9 1.6E-24 3.4E-29 200.2 30.0 247 318-567 3-260 (311)
98 KOG1273 WD40 repeat protein [G 99.9 2.4E-25 5.2E-30 204.5 24.1 275 290-567 26-320 (405)
99 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.4E-24 9.5E-29 212.4 35.6 262 299-567 1-277 (300)
100 KOG0301 Phospholipase A2-activ 99.9 2.7E-25 5.8E-30 223.4 26.1 273 277-566 4-285 (745)
101 KOG0639 Transducin-like enhanc 99.9 1.1E-25 2.3E-30 218.1 20.1 275 285-566 417-701 (705)
102 KOG0308 Conserved WD40 repeat- 99.9 7.8E-26 1.7E-30 225.7 19.7 305 259-567 42-391 (735)
103 KOG0643 Translation initiation 99.9 1.2E-24 2.7E-29 195.7 25.3 231 324-558 5-250 (327)
104 KOG0264 Nucleosome remodeling 99.9 3.1E-25 6.7E-30 213.6 22.4 246 283-567 120-402 (422)
105 KOG0647 mRNA export protein (c 99.9 1.5E-24 3.2E-29 198.5 25.7 229 281-518 66-313 (347)
106 KOG1408 WD40 repeat protein [F 99.9 3.7E-25 8E-30 222.3 22.7 244 284-530 456-715 (1080)
107 KOG0289 mRNA splicing factor [ 99.9 1.2E-24 2.6E-29 207.7 24.7 263 259-527 236-505 (506)
108 KOG2106 Uncharacterized conser 99.9 3.7E-23 8.1E-28 200.9 34.4 296 266-567 224-624 (626)
109 KOG1539 WD repeat protein [Gen 99.9 1.6E-23 3.4E-28 214.7 32.8 359 202-567 74-604 (910)
110 KOG0268 Sof1-like rRNA process 99.9 1.3E-25 2.9E-30 209.8 15.9 261 259-531 84-348 (433)
111 KOG1332 Vesicle coat complex C 99.9 4.2E-25 9.1E-30 196.3 18.3 246 284-529 8-287 (299)
112 KOG2055 WD40 repeat protein [G 99.9 2.3E-24 5E-29 207.4 24.7 282 285-567 211-510 (514)
113 KOG0299 U3 snoRNP-associated p 99.9 2.3E-24 5E-29 207.5 24.4 231 284-518 199-445 (479)
114 KOG0301 Phospholipase A2-activ 99.9 2.1E-24 4.6E-29 217.0 24.3 255 259-530 30-290 (745)
115 KOG0640 mRNA cleavage stimulat 99.9 9.9E-25 2.2E-29 199.9 19.7 247 278-528 163-426 (430)
116 KOG0646 WD40 repeat protein [G 99.9 2.3E-24 5E-29 207.9 22.0 257 265-527 62-349 (476)
117 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.1E-22 4.6E-27 200.2 36.8 276 262-549 9-300 (300)
118 KOG1332 Vesicle coat complex C 99.9 9.1E-25 2E-29 194.2 17.3 241 326-567 8-284 (299)
119 KOG0650 WD40 repeat nucleolar 99.9 3.2E-24 6.8E-29 212.2 22.4 288 274-566 387-732 (733)
120 KOG2445 Nuclear pore complex c 99.9 1.5E-23 3.4E-28 192.2 25.1 255 284-567 10-316 (361)
121 KOG0267 Microtubule severing p 99.9 9.4E-26 2E-30 227.5 10.4 237 280-560 21-259 (825)
122 KOG2106 Uncharacterized conser 99.9 4E-22 8.6E-27 193.8 33.9 291 262-567 178-519 (626)
123 KOG0639 Transducin-like enhanc 99.9 1.5E-23 3.2E-28 203.3 23.8 257 264-527 440-703 (705)
124 KOG0269 WD40 repeat-containing 99.9 3.2E-24 7E-29 218.1 19.5 273 289-564 41-335 (839)
125 KOG4283 Transcription-coupled 99.9 6.2E-23 1.4E-27 187.0 25.5 281 282-566 38-362 (397)
126 KOG0772 Uncharacterized conser 99.9 1.7E-23 3.6E-28 203.8 22.7 235 287-525 214-484 (641)
127 KOG1274 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 210.8 29.1 274 285-566 11-297 (933)
128 KOG0321 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 208.3 20.7 274 292-567 54-389 (720)
129 KOG0646 WD40 repeat protein [G 99.9 9.6E-23 2.1E-27 196.8 23.6 263 264-567 18-305 (476)
130 KOG1063 RNA polymerase II elon 99.9 2.5E-22 5.3E-27 202.2 27.0 282 282-567 262-646 (764)
131 KOG0300 WD40 repeat-containing 99.9 4.1E-23 8.8E-28 189.8 19.5 244 319-567 138-426 (481)
132 KOG1036 Mitotic spindle checkp 99.9 6.4E-22 1.4E-26 182.0 26.0 224 285-518 52-294 (323)
133 KOG1274 WD40 repeat protein [G 99.9 3.9E-22 8.4E-27 206.8 26.9 238 327-567 11-260 (933)
134 KOG0302 Ribosome Assembly prot 99.9 1.7E-22 3.7E-27 190.0 21.4 246 283-566 147-435 (440)
135 KOG0264 Nucleosome remodeling 99.9 1.4E-22 3E-27 195.5 21.0 227 265-529 148-405 (422)
136 KOG2048 WD40 repeat protein [G 99.9 9.8E-21 2.1E-25 190.5 34.3 219 261-483 44-275 (691)
137 KOG2048 WD40 repeat protein [G 99.9 6.3E-21 1.4E-25 191.9 31.4 276 281-565 19-315 (691)
138 KOG0270 WD40 repeat-containing 99.9 5.9E-22 1.3E-26 190.2 21.7 241 291-533 177-454 (463)
139 KOG1063 RNA polymerase II elon 99.9 2.9E-21 6.3E-26 194.5 26.5 358 207-567 272-761 (764)
140 KOG4378 Nuclear protein COP1 [ 99.9 9.1E-22 2E-26 190.8 21.5 280 265-551 13-305 (673)
141 KOG2055 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 188.2 22.3 248 278-528 248-512 (514)
142 KOG1034 Transcriptional repres 99.9 2.6E-21 5.6E-26 179.2 22.3 288 276-567 26-381 (385)
143 KOG0267 Microtubule severing p 99.9 3.5E-23 7.5E-28 209.1 9.9 214 260-478 46-262 (825)
144 KOG4283 Transcription-coupled 99.9 2.4E-21 5.3E-26 176.7 20.8 205 327-531 41-279 (397)
145 KOG4328 WD40 protein [Function 99.9 6.4E-21 1.4E-25 183.7 23.6 290 276-566 175-492 (498)
146 KOG2919 Guanine nucleotide-bin 99.9 6.9E-21 1.5E-25 175.9 22.8 266 290-560 52-361 (406)
147 KOG0307 Vesicle coat complex C 99.9 2.3E-22 5.1E-27 213.4 13.3 272 292-566 11-324 (1049)
148 KOG1538 Uncharacterized conser 99.9 7.6E-21 1.7E-25 190.1 23.0 269 289-567 14-291 (1081)
149 KOG0269 WD40 repeat-containing 99.9 6.5E-22 1.4E-26 201.5 15.1 221 262-483 108-340 (839)
150 KOG4227 WD40 repeat protein [G 99.9 1.1E-20 2.3E-25 178.4 22.1 313 250-567 19-385 (609)
151 KOG0321 WD40 repeat-containing 99.9 7.5E-21 1.6E-25 189.9 21.4 247 281-530 94-393 (720)
152 KOG2096 WD40 repeat protein [G 99.9 2.3E-20 5E-25 172.1 22.3 241 323-566 80-357 (420)
153 KOG0307 Vesicle coat complex C 99.9 1.4E-21 2.9E-26 207.7 15.3 242 287-531 64-330 (1049)
154 KOG0322 G-protein beta subunit 99.9 5.2E-21 1.1E-25 172.2 14.4 280 279-567 6-321 (323)
155 KOG4328 WD40 protein [Function 99.9 2.9E-20 6.4E-25 179.2 20.0 254 314-567 171-448 (498)
156 KOG1445 Tumor-specific antigen 99.9 8.1E-20 1.8E-24 181.9 23.1 208 274-483 66-293 (1012)
157 KOG1009 Chromatin assembly com 99.9 1.5E-19 3.2E-24 172.0 22.9 285 259-564 31-367 (434)
158 COG2319 FOG: WD40 repeat [Gene 99.9 1.3E-17 2.7E-22 172.5 39.4 295 263-567 133-440 (466)
159 KOG4378 Nuclear protein COP1 [ 99.8 1.1E-19 2.5E-24 176.3 21.8 281 222-510 13-305 (673)
160 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-17 3.1E-22 172.1 38.9 282 282-567 60-357 (466)
161 KOG1310 WD40 repeat protein [G 99.8 6E-20 1.3E-24 180.3 19.1 206 278-483 41-303 (758)
162 KOG0302 Ribosome Assembly prot 99.8 7E-20 1.5E-24 172.5 18.1 205 326-567 148-376 (440)
163 KOG0650 WD40 repeat nucleolar 99.8 1.2E-19 2.5E-24 180.1 20.1 240 322-566 393-677 (733)
164 KOG0642 Cell-cycle nuclear pro 99.8 2.5E-20 5.4E-25 184.2 14.8 256 279-539 286-573 (577)
165 KOG1273 WD40 repeat protein [G 99.8 8.9E-19 1.9E-23 161.5 22.4 245 279-529 57-323 (405)
166 KOG1334 WD40 repeat protein [G 99.8 4.1E-20 8.9E-25 179.4 13.3 290 277-566 132-463 (559)
167 KOG1188 WD40 repeat protein [G 99.8 1.2E-19 2.6E-24 169.2 15.8 225 342-567 41-344 (376)
168 PRK11028 6-phosphogluconolacto 99.8 3E-17 6.6E-22 165.8 34.3 263 262-528 10-304 (330)
169 KOG0644 Uncharacterized conser 99.8 1.2E-20 2.5E-25 193.3 9.3 274 277-566 180-465 (1113)
170 PRK11028 6-phosphogluconolacto 99.8 2.5E-17 5.4E-22 166.5 32.4 262 303-567 6-302 (330)
171 KOG0270 WD40 repeat-containing 99.8 2.6E-18 5.6E-23 165.4 23.0 233 333-567 177-447 (463)
172 KOG1445 Tumor-specific antigen 99.8 3.6E-18 7.7E-23 170.3 23.4 134 425-561 641-786 (1012)
173 KOG1007 WD repeat protein TSSC 99.8 4.7E-18 1E-22 155.0 21.2 274 250-565 26-357 (370)
174 KOG1034 Transcriptional repres 99.8 3.6E-18 7.8E-23 158.5 20.6 240 285-528 87-383 (385)
175 KOG0303 Actin-binding protein 99.8 1.3E-17 2.8E-22 158.2 24.0 227 323-550 75-320 (472)
176 KOG1538 Uncharacterized conser 99.8 1.5E-16 3.3E-21 159.7 32.4 204 279-483 45-293 (1081)
177 KOG1007 WD repeat protein TSSC 99.8 1.8E-17 3.8E-22 151.3 22.9 277 200-529 37-362 (370)
178 KOG0649 WD40 repeat protein [G 99.8 2.4E-17 5.2E-22 147.0 21.7 227 331-566 12-271 (325)
179 KOG0642 Cell-cycle nuclear pro 99.8 1.4E-18 3.1E-23 171.8 15.3 243 320-567 285-559 (577)
180 KOG2919 Guanine nucleotide-bin 99.8 2.2E-17 4.8E-22 152.9 22.0 231 332-567 52-325 (406)
181 KOG2445 Nuclear pore complex c 99.8 5.1E-17 1.1E-21 149.6 23.9 235 259-528 30-318 (361)
182 KOG1240 Protein kinase contain 99.8 3.5E-17 7.5E-22 174.7 25.8 290 278-567 1039-1431(1431)
183 KOG0290 Conserved WD40 repeat- 99.8 1.6E-17 3.5E-22 151.7 19.9 239 284-525 93-362 (364)
184 KOG1517 Guanine nucleotide bin 99.8 2.5E-17 5.5E-22 173.1 24.1 278 287-567 1064-1379(1387)
185 KOG0303 Actin-binding protein 99.8 2.5E-17 5.3E-22 156.3 19.8 202 279-485 73-296 (472)
186 KOG2110 Uncharacterized conser 99.8 1.3E-15 2.7E-20 144.0 31.2 231 287-529 5-249 (391)
187 KOG1963 WD40 repeat protein [G 99.8 2.3E-16 5E-21 164.1 28.6 280 284-567 202-536 (792)
188 KOG1524 WD40 repeat-containing 99.8 3.1E-17 6.8E-22 161.0 19.0 260 285-565 12-282 (737)
189 KOG0649 WD40 repeat protein [G 99.8 7.1E-16 1.5E-20 137.7 25.1 267 288-566 11-313 (325)
190 KOG0290 Conserved WD40 repeat- 99.7 1.2E-16 2.5E-21 146.2 18.8 249 280-567 38-316 (364)
191 KOG1587 Cytoplasmic dynein int 99.7 3.6E-16 7.9E-21 162.4 25.0 257 309-567 222-514 (555)
192 KOG1188 WD40 repeat protein [G 99.7 6.6E-17 1.4E-21 151.0 17.2 261 264-528 50-346 (376)
193 KOG1587 Cytoplasmic dynein int 99.7 3.5E-16 7.7E-21 162.5 23.6 262 265-530 223-518 (555)
194 KOG2139 WD40 repeat protein [G 99.7 1.7E-15 3.8E-20 142.5 25.7 276 287-566 98-428 (445)
195 PRK01742 tolB translocation pr 99.7 3E-16 6.5E-21 163.8 23.1 237 262-509 182-426 (429)
196 PRK01742 tolB translocation pr 99.7 3.7E-16 8.1E-21 163.0 23.2 230 308-550 183-426 (429)
197 KOG1272 WD40-repeat-containing 99.7 1.9E-17 4.1E-22 160.2 11.0 261 289-561 131-401 (545)
198 KOG2110 Uncharacterized conser 99.7 4.1E-15 9E-20 140.6 26.1 230 329-567 5-246 (391)
199 KOG1523 Actin-related protein 99.7 1.2E-15 2.5E-20 141.6 21.5 283 282-567 5-360 (361)
200 PF02239 Cytochrom_D1: Cytochr 99.7 3.1E-14 6.7E-19 144.1 33.9 265 300-567 6-345 (369)
201 PRK03629 tolB translocation pr 99.7 2.2E-14 4.8E-19 149.4 29.9 232 309-549 179-427 (429)
202 KOG4227 WD40 repeat protein [G 99.7 6.3E-15 1.4E-19 139.7 22.7 241 285-527 103-386 (609)
203 KOG4497 Uncharacterized conser 99.7 5.3E-15 1.2E-19 137.5 21.4 271 292-566 13-388 (447)
204 KOG1963 WD40 repeat protein [G 99.7 1.9E-14 4.1E-19 150.0 27.9 279 283-565 12-318 (792)
205 KOG1009 Chromatin assembly com 99.7 3.2E-15 6.9E-20 142.8 19.1 124 287-411 13-161 (434)
206 KOG2321 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 143.7 24.0 274 285-565 49-339 (703)
207 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3E-20 146.3 16.2 191 291-483 148-354 (398)
208 KOG1523 Actin-related protein 99.7 1E-14 2.2E-19 135.5 21.2 232 327-560 8-269 (361)
209 KOG2394 WD40 protein DMR-N9 [G 99.7 3.5E-15 7.7E-20 147.0 19.2 242 289-548 125-383 (636)
210 KOG1524 WD40 repeat-containing 99.7 2.8E-15 6E-20 147.4 17.2 183 281-522 98-280 (737)
211 PRK05137 tolB translocation pr 99.7 1E-13 2.3E-18 145.2 29.9 233 308-550 181-433 (435)
212 KOG2111 Uncharacterized conser 99.7 6.9E-13 1.5E-17 123.4 31.3 231 289-529 7-257 (346)
213 PRK04922 tolB translocation pr 99.7 7.4E-14 1.6E-18 146.1 28.3 232 309-549 184-432 (433)
214 KOG0644 Uncharacterized conser 99.6 3E-16 6.6E-21 161.3 9.2 259 259-531 207-471 (1113)
215 KOG0771 Prolactin regulatory e 99.6 2.8E-15 6E-20 144.2 14.4 193 333-565 148-350 (398)
216 KOG3881 Uncharacterized conser 99.6 3.7E-14 8E-19 135.1 20.9 261 285-550 53-342 (412)
217 KOG1517 Guanine nucleotide bin 99.6 5.5E-14 1.2E-18 148.4 23.8 252 308-567 1049-1331(1387)
218 PF10282 Lactonase: Lactonase, 99.6 7.3E-12 1.6E-16 126.9 38.6 271 276-547 26-345 (345)
219 KOG1409 Uncharacterized conser 99.6 2.4E-14 5.2E-19 134.1 18.5 251 275-530 12-272 (404)
220 KOG2315 Predicted translation 99.6 9.8E-13 2.1E-17 130.9 30.7 268 287-567 34-388 (566)
221 PRK02889 tolB translocation pr 99.6 2.7E-13 5.7E-18 141.5 27.9 233 309-550 176-425 (427)
222 KOG4497 Uncharacterized conser 99.6 4.1E-13 8.8E-18 125.1 24.2 270 287-562 48-425 (447)
223 KOG1354 Serine/threonine prote 99.6 8.2E-14 1.8E-18 130.5 19.6 275 287-566 25-431 (433)
224 PF10282 Lactonase: Lactonase, 99.6 1.8E-11 4E-16 124.0 37.5 266 302-567 2-320 (345)
225 KOG1240 Protein kinase contain 99.6 2.7E-13 5.9E-18 145.4 24.4 249 314-567 1034-1332(1431)
226 KOG1310 WD40 repeat protein [G 99.6 1.9E-14 4.1E-19 142.1 14.1 214 320-533 41-308 (758)
227 PRK02889 tolB translocation pr 99.6 3.9E-13 8.5E-18 140.2 24.9 221 281-508 189-424 (427)
228 PF02239 Cytochrom_D1: Cytochr 99.6 6.8E-12 1.5E-16 127.1 32.9 252 277-534 26-353 (369)
229 KOG2111 Uncharacterized conser 99.6 1.3E-12 2.7E-17 121.7 24.8 228 332-566 8-253 (346)
230 COG5354 Uncharacterized protei 99.6 2.3E-12 5E-17 126.8 27.6 270 287-567 71-393 (561)
231 PRK03629 tolB translocation pr 99.6 1.3E-12 2.9E-17 136.1 27.9 219 281-508 192-427 (429)
232 KOG0322 G-protein beta subunit 99.6 6.7E-14 1.4E-18 126.7 15.5 214 264-482 35-322 (323)
233 PRK04922 tolB translocation pr 99.6 1E-12 2.3E-17 137.4 26.6 231 265-508 185-432 (433)
234 KOG3881 Uncharacterized conser 99.6 3.8E-13 8.1E-18 128.3 20.8 235 328-567 54-318 (412)
235 PRK05137 tolB translocation pr 99.6 2.3E-12 4.9E-17 135.1 28.0 220 279-508 193-432 (435)
236 KOG2314 Translation initiation 99.5 2.5E-12 5.4E-17 127.6 25.2 267 289-560 251-558 (698)
237 TIGR02800 propeller_TolB tol-p 99.5 3.6E-12 7.9E-17 133.2 28.3 231 308-547 169-416 (417)
238 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.4E-19 140.1 8.8 228 329-567 129-360 (545)
239 KOG1334 WD40 repeat protein [G 99.5 8.1E-14 1.8E-18 136.1 13.6 250 318-567 131-422 (559)
240 PRK00178 tolB translocation pr 99.5 7.9E-12 1.7E-16 131.1 29.7 232 310-550 180-428 (430)
241 KOG2321 WD40 repeat protein [G 99.5 1.3E-12 2.7E-17 130.2 21.1 237 327-567 49-300 (703)
242 PRK04792 tolB translocation pr 99.5 9.9E-12 2.1E-16 130.2 28.2 231 310-549 199-446 (448)
243 KOG2394 WD40 protein DMR-N9 [G 99.5 5.2E-13 1.1E-17 131.9 17.1 189 297-507 183-383 (636)
244 KOG2139 WD40 repeat protein [G 99.5 5.9E-12 1.3E-16 119.0 22.6 227 281-527 190-430 (445)
245 PF08662 eIF2A: Eukaryotic tra 99.5 2.8E-12 6E-17 118.2 19.7 108 453-567 58-177 (194)
246 KOG0974 WD-repeat protein WDR6 99.5 1.4E-12 3.1E-17 138.4 19.6 265 287-567 7-286 (967)
247 COG2706 3-carboxymuconate cycl 99.5 2.5E-10 5.4E-15 108.9 32.7 286 263-548 15-345 (346)
248 TIGR02658 TTQ_MADH_Hv methylam 99.5 1.8E-10 3.9E-15 114.2 32.9 256 309-567 27-328 (352)
249 PRK01029 tolB translocation pr 99.5 5.8E-11 1.3E-15 123.4 29.4 236 309-551 165-426 (428)
250 PF08662 eIF2A: Eukaryotic tra 99.4 1E-11 2.2E-16 114.4 19.4 148 333-483 9-179 (194)
251 PRK04792 tolB translocation pr 99.4 7.6E-11 1.6E-15 123.5 27.3 219 281-508 211-446 (448)
252 PRK01029 tolB translocation pr 99.4 1.4E-10 3.1E-15 120.5 26.7 211 352-566 166-400 (428)
253 PRK00178 tolB translocation pr 99.4 9.8E-11 2.1E-15 122.8 25.7 220 280-508 191-427 (430)
254 TIGR02800 propeller_TolB tol-p 99.4 1.5E-10 3.4E-15 121.0 27.2 202 352-561 171-386 (417)
255 TIGR02658 TTQ_MADH_Hv methylam 99.4 5.2E-09 1.1E-13 103.9 36.1 257 264-534 27-336 (352)
256 KOG4547 WD40 repeat-containing 99.4 1.1E-10 2.3E-15 117.5 24.3 201 297-501 3-239 (541)
257 TIGR03300 assembly_YfgL outer 99.4 1.2E-09 2.6E-14 112.6 30.7 253 298-567 104-377 (377)
258 KOG0280 Uncharacterized conser 99.4 6.2E-11 1.3E-15 109.3 18.5 240 286-566 68-330 (339)
259 KOG2041 WD40 repeat protein [G 99.3 1.6E-10 3.5E-15 117.8 22.3 273 287-565 14-333 (1189)
260 KOG4190 Uncharacterized conser 99.3 1.5E-11 3.3E-16 121.8 12.2 277 279-565 727-1032(1034)
261 COG2706 3-carboxymuconate cycl 99.3 9.8E-09 2.1E-13 98.2 30.7 259 308-566 15-318 (346)
262 KOG4547 WD40 repeat-containing 99.3 1E-10 2.2E-15 117.7 17.6 202 339-566 3-217 (541)
263 KOG0309 Conserved WD40 repeat- 99.3 4E-11 8.6E-16 122.7 13.4 278 287-567 24-337 (1081)
264 KOG2315 Predicted translation 99.3 4.6E-09 9.9E-14 105.2 27.5 270 266-549 107-410 (566)
265 KOG0974 WD-repeat protein WDR6 99.3 2E-10 4.3E-15 122.4 17.6 198 287-530 87-290 (967)
266 COG5354 Uncharacterized protei 99.2 3E-09 6.4E-14 105.3 24.3 271 284-567 29-346 (561)
267 TIGR03300 assembly_YfgL outer 99.2 6.6E-09 1.4E-13 107.0 27.9 252 299-567 65-336 (377)
268 COG4946 Uncharacterized protei 99.2 1.9E-08 4.1E-13 98.7 28.6 281 265-558 205-507 (668)
269 PF04762 IKI3: IKI3 family; I 99.2 1.5E-08 3.2E-13 113.9 32.0 280 285-567 73-454 (928)
270 PLN02919 haloacid dehalogenase 99.2 1.4E-08 3E-13 116.2 32.2 231 333-567 571-886 (1057)
271 PLN02919 haloacid dehalogenase 99.2 2.2E-08 4.8E-13 114.6 33.8 234 292-532 572-892 (1057)
272 KOG2314 Translation initiation 99.2 7.4E-09 1.6E-13 103.4 24.8 268 291-567 214-523 (698)
273 KOG0280 Uncharacterized conser 99.2 2.5E-09 5.4E-14 98.9 18.9 196 289-484 123-334 (339)
274 PRK04043 tolB translocation pr 99.2 2.8E-08 6.1E-13 102.7 28.8 198 352-560 170-388 (419)
275 COG5170 CDC55 Serine/threonine 99.2 7E-10 1.5E-14 103.1 14.5 236 287-526 26-365 (460)
276 KOG1354 Serine/threonine prote 99.2 6.4E-10 1.4E-14 104.7 14.3 224 328-567 24-299 (433)
277 PRK04043 tolB translocation pr 99.2 5.3E-08 1.1E-12 100.7 29.7 226 309-546 169-418 (419)
278 KOG1064 RAVE (regulator of V-A 99.1 2.7E-10 5.8E-15 126.8 12.5 208 341-567 2180-2396(2439)
279 KOG1064 RAVE (regulator of V-A 99.1 4.2E-10 9.1E-15 125.3 10.1 190 249-451 2210-2407(2439)
280 PF08450 SGL: SMP-30/Gluconola 99.1 1.5E-06 3.2E-11 83.9 33.4 214 292-517 4-244 (246)
281 KOG1409 Uncharacterized conser 99.1 5.5E-09 1.2E-13 98.6 15.5 244 319-567 14-268 (404)
282 COG4946 Uncharacterized protei 99.1 1.4E-07 3E-12 92.8 25.6 145 285-432 357-508 (668)
283 KOG0309 Conserved WD40 repeat- 99.1 6.3E-10 1.4E-14 114.1 9.9 218 267-484 94-340 (1081)
284 KOG1832 HIV-1 Vpr-binding prot 99.1 1.5E-10 3.4E-15 120.5 5.5 262 276-557 1090-1377(1516)
285 KOG1912 WD40 repeat protein [G 99.0 1.4E-07 3E-12 97.9 24.9 211 272-483 40-304 (1062)
286 PF13360 PQQ_2: PQQ-like domai 99.0 3.4E-07 7.3E-12 87.7 26.1 213 308-533 2-235 (238)
287 PF08450 SGL: SMP-30/Gluconola 99.0 2E-06 4.3E-11 83.0 31.5 215 333-557 3-243 (246)
288 COG5170 CDC55 Serine/threonine 99.0 3.1E-09 6.7E-14 98.8 10.6 234 328-567 25-307 (460)
289 KOG1912 WD40 repeat protein [G 99.0 4.5E-08 9.8E-13 101.4 19.9 235 290-566 18-301 (1062)
290 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.2E-12 86.2 20.3 220 341-560 84-323 (344)
291 PF04762 IKI3: IKI3 family; I 99.0 7.3E-07 1.6E-11 100.5 30.5 234 328-566 74-376 (928)
292 KOG4190 Uncharacterized conser 99.0 1.9E-09 4.2E-14 107.1 8.7 204 322-532 728-952 (1034)
293 PRK11138 outer membrane biogen 98.9 4.5E-07 9.7E-12 94.0 26.2 252 299-567 120-392 (394)
294 PF07433 DUF1513: Protein of u 98.9 8.4E-07 1.8E-11 85.2 25.4 241 292-560 9-277 (305)
295 KOG2041 WD40 repeat protein [G 98.9 1.7E-08 3.8E-13 103.4 14.7 228 330-560 15-279 (1189)
296 KOG0882 Cyclophilin-related pe 98.9 1.3E-08 2.9E-13 99.2 12.1 252 261-539 27-316 (558)
297 KOG4532 WD40-like repeat conta 98.9 2.6E-07 5.7E-12 84.6 19.2 196 350-552 51-263 (344)
298 KOG1645 RING-finger-containing 98.9 1.5E-07 3.3E-12 90.8 18.0 248 311-567 175-459 (463)
299 PRK11138 outer membrane biogen 98.9 8.1E-07 1.7E-11 92.0 24.7 253 299-567 69-351 (394)
300 PF15492 Nbas_N: Neuroblastoma 98.8 4E-06 8.6E-11 78.3 25.8 224 293-533 3-264 (282)
301 KOG3914 WD repeat protein WDR4 98.8 1.8E-08 3.8E-13 97.3 10.4 123 287-412 110-232 (390)
302 KOG1832 HIV-1 Vpr-binding prot 98.8 1.9E-09 4.1E-14 112.7 4.0 202 317-533 1089-1296(1516)
303 PF13360 PQQ_2: PQQ-like domai 98.8 2.4E-06 5.3E-11 81.8 22.6 208 350-567 2-228 (238)
304 KOG4714 Nucleoporin [Nuclear s 98.7 1.9E-07 4.2E-12 85.1 12.6 165 278-443 80-255 (319)
305 KOG1645 RING-finger-containing 98.7 8.4E-07 1.8E-11 85.8 17.2 245 276-528 182-461 (463)
306 KOG1275 PAB-dependent poly(A) 98.7 7.7E-07 1.7E-11 94.2 18.1 174 388-567 150-340 (1118)
307 PF15492 Nbas_N: Neuroblastoma 98.7 9.5E-06 2.1E-10 75.8 21.9 186 291-485 47-261 (282)
308 KOG3914 WD repeat protein WDR4 98.6 8.6E-07 1.9E-11 85.9 15.2 157 290-451 65-232 (390)
309 KOG2695 WD40 repeat protein [G 98.6 1.2E-07 2.7E-12 89.7 8.9 168 292-463 216-401 (425)
310 PF00930 DPPIV_N: Dipeptidyl p 98.6 4E-05 8.7E-10 78.0 27.8 257 296-558 1-346 (353)
311 PRK02888 nitrous-oxide reducta 98.6 1.3E-05 2.7E-10 84.1 24.1 255 297-558 139-450 (635)
312 KOG0882 Cyclophilin-related pe 98.6 4.5E-07 9.7E-12 88.8 12.3 202 328-531 8-234 (558)
313 KOG4714 Nucleoporin [Nuclear s 98.6 2.9E-07 6.3E-12 84.0 10.1 110 295-404 140-255 (319)
314 KOG4649 PQQ (pyrrolo-quinoline 98.6 6.3E-05 1.4E-09 69.2 25.0 255 298-567 62-349 (354)
315 KOG1920 IkappaB kinase complex 98.6 1.4E-05 2.9E-10 87.7 24.4 240 287-533 68-327 (1265)
316 cd00216 PQQ_DH Dehydrogenases 98.6 3.5E-05 7.5E-10 82.0 27.5 254 299-567 61-422 (488)
317 PF04053 Coatomer_WDAD: Coatom 98.6 1.5E-05 3.3E-10 82.3 23.9 221 328-566 31-259 (443)
318 PF00400 WD40: WD domain, G-be 98.6 2.2E-07 4.7E-12 61.2 6.1 38 278-315 2-39 (39)
319 PF14583 Pectate_lyase22: Olig 98.5 0.00027 5.9E-09 70.3 29.5 265 294-566 42-378 (386)
320 KOG3621 WD40 repeat-containing 98.5 1.9E-05 4.1E-10 82.0 21.6 271 286-565 32-349 (726)
321 PF00400 WD40: WD domain, G-be 98.5 3.5E-07 7.5E-12 60.2 6.0 39 319-357 1-39 (39)
322 KOG2114 Vacuolar assembly/sort 98.5 3.7E-05 8.1E-10 81.5 23.7 203 336-543 30-260 (933)
323 KOG1275 PAB-dependent poly(A) 98.5 2.8E-06 6.2E-11 90.0 15.4 193 298-527 146-341 (1118)
324 KOG2695 WD40 repeat protein [G 98.5 3.5E-07 7.5E-12 86.7 7.4 125 286-413 251-386 (425)
325 KOG2066 Vacuolar assembly/sort 98.5 6.1E-06 1.3E-10 86.7 17.1 180 287-483 39-233 (846)
326 PF06433 Me-amine-dh_H: Methyl 98.5 0.00048 1E-08 67.3 28.9 255 309-567 17-318 (342)
327 PF02897 Peptidase_S9_N: Proly 98.4 0.00084 1.8E-08 70.1 32.3 240 290-535 126-411 (414)
328 KOG2114 Vacuolar assembly/sort 98.4 0.00016 3.4E-09 76.9 25.3 211 269-483 6-243 (933)
329 KOG2066 Vacuolar assembly/sort 98.4 2.5E-05 5.4E-10 82.2 19.4 181 329-529 39-234 (846)
330 COG3391 Uncharacterized conser 98.4 0.00099 2.1E-08 68.5 31.1 251 311-564 13-278 (381)
331 COG0823 TolB Periplasmic compo 98.4 2.8E-05 6.1E-10 80.1 18.9 191 362-557 182-387 (425)
332 PF07433 DUF1513: Protein of u 98.4 0.00011 2.4E-09 70.9 21.4 215 224-442 31-285 (305)
333 PF06977 SdiA-regulated: SdiA- 98.4 0.00037 8.1E-09 66.2 25.0 198 280-480 14-247 (248)
334 PF11768 DUF3312: Protein of u 98.3 0.00094 2E-08 68.8 28.5 89 477-567 238-327 (545)
335 PRK02888 nitrous-oxide reducta 98.3 0.00029 6.2E-09 74.2 25.3 180 381-567 201-402 (635)
336 KOG3617 WD40 and TPR repeat-co 98.3 2.4E-05 5.3E-10 82.4 17.3 259 292-557 20-373 (1416)
337 cd00216 PQQ_DH Dehydrogenases 98.3 0.00039 8.5E-09 73.9 26.5 222 300-533 111-429 (488)
338 COG0823 TolB Periplasmic compo 98.3 0.00011 2.5E-09 75.7 21.6 195 319-520 182-391 (425)
339 PF00930 DPPIV_N: Dipeptidyl p 98.3 0.00093 2E-08 68.0 28.3 227 287-518 42-347 (353)
340 PF04053 Coatomer_WDAD: Coatom 98.3 0.00036 7.9E-09 72.3 24.8 219 283-528 28-262 (443)
341 KOG1920 IkappaB kinase complex 98.3 0.00015 3.3E-09 79.9 22.3 226 329-566 68-319 (1265)
342 COG3391 Uncharacterized conser 98.2 0.00061 1.3E-08 70.0 25.6 217 291-510 77-310 (381)
343 KOG1008 Uncharacterized conser 98.2 7E-07 1.5E-11 91.2 3.4 197 287-484 56-276 (783)
344 PF08596 Lgl_C: Lethal giant l 98.2 0.00024 5.2E-09 72.6 21.7 258 289-559 3-326 (395)
345 PF06433 Me-amine-dh_H: Methyl 98.2 0.00062 1.3E-08 66.5 22.9 196 292-495 99-329 (342)
346 PF06977 SdiA-regulated: SdiA- 98.1 0.0015 3.3E-08 62.1 22.7 196 367-566 16-247 (248)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0053 1.2E-07 65.7 29.5 184 299-487 69-337 (527)
348 KOG3617 WD40 and TPR repeat-co 98.0 0.00013 2.9E-09 77.1 15.5 70 290-359 62-131 (1416)
349 PF11768 DUF3312: Protein of u 98.0 3.8E-05 8.2E-10 78.8 11.2 76 285-362 257-332 (545)
350 KOG4649 PQQ (pyrrolo-quinoline 98.0 0.0011 2.3E-08 61.3 19.3 149 378-530 16-167 (354)
351 PF00780 CNH: CNH domain; Int 98.0 0.0039 8.5E-08 61.0 24.4 214 339-567 5-253 (275)
352 COG3386 Gluconolactonase [Carb 98.0 0.0056 1.2E-07 60.4 24.5 216 335-558 30-274 (307)
353 PF00780 CNH: CNH domain; Int 98.0 0.018 3.9E-07 56.3 28.6 221 297-533 5-260 (275)
354 PF04841 Vps16_N: Vps16, N-ter 97.9 0.019 4.1E-07 59.5 29.5 190 310-511 62-272 (410)
355 PF03178 CPSF_A: CPSF A subuni 97.9 0.0019 4.2E-08 64.8 21.5 206 352-565 3-261 (321)
356 PF03178 CPSF_A: CPSF A subuni 97.8 0.013 2.8E-07 58.9 25.8 212 309-525 2-262 (321)
357 PRK10115 protease 2; Provision 97.8 0.11 2.4E-06 57.6 33.9 237 289-533 128-399 (686)
358 PF04841 Vps16_N: Vps16, N-ter 97.8 0.016 3.4E-07 60.1 25.4 187 352-551 62-271 (410)
359 PF14583 Pectate_lyase22: Olig 97.8 0.0097 2.1E-07 59.4 22.5 240 315-560 16-303 (386)
360 PF02897 Peptidase_S9_N: Proly 97.8 0.024 5.2E-07 59.1 27.2 218 332-553 126-384 (414)
361 PF08596 Lgl_C: Lethal giant l 97.7 0.0042 9E-08 63.6 20.2 204 277-482 76-334 (395)
362 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.061 1.3E-06 57.6 29.6 145 300-447 121-338 (527)
363 KOG4640 Anaphase-promoting com 97.7 0.00018 3.9E-09 74.1 9.6 97 284-381 17-114 (665)
364 KOG1008 Uncharacterized conser 97.7 1.4E-05 3E-10 82.0 1.2 197 330-529 57-276 (783)
365 PRK13616 lipoprotein LpqB; Pro 97.6 0.0083 1.8E-07 64.8 21.2 207 308-524 328-564 (591)
366 COG3490 Uncharacterized protei 97.6 0.014 3.1E-07 54.9 19.5 248 292-565 72-344 (366)
367 PF08553 VID27: VID27 cytoplas 97.6 0.009 1.9E-07 65.6 21.2 132 348-482 501-646 (794)
368 PRK13616 lipoprotein LpqB; Pro 97.6 0.017 3.8E-07 62.3 23.0 206 350-564 328-563 (591)
369 COG3386 Gluconolactonase [Carb 97.6 0.024 5.2E-07 55.9 22.0 183 290-475 68-276 (307)
370 PF05096 Glu_cyclase_2: Glutam 97.5 0.09 2E-06 50.0 24.5 183 331-519 46-251 (264)
371 KOG4499 Ca2+-binding protein R 97.5 0.043 9.4E-07 50.3 20.7 203 343-548 29-262 (310)
372 PRK10115 protease 2; Provision 97.5 0.2 4.3E-06 55.7 30.5 197 330-535 127-353 (686)
373 PF14655 RAB3GAP2_N: Rab3 GTPa 97.5 0.057 1.2E-06 55.3 23.8 88 292-381 6-117 (415)
374 PF08553 VID27: VID27 cytoplas 97.4 0.0029 6.4E-08 69.2 15.1 126 433-560 503-639 (794)
375 KOG2395 Protein involved in va 97.4 0.007 1.5E-07 61.5 16.4 137 421-560 342-492 (644)
376 PF15390 DUF4613: Domain of un 97.4 0.068 1.5E-06 55.5 23.2 119 287-405 56-188 (671)
377 smart00320 WD40 WD40 repeats. 97.4 0.00043 9.4E-09 43.9 5.3 38 278-315 3-40 (40)
378 PHA02713 hypothetical protein; 97.3 0.02 4.4E-07 61.9 20.1 214 310-533 273-538 (557)
379 smart00320 WD40 WD40 repeats. 97.3 0.00067 1.4E-08 43.0 5.4 39 319-357 2-40 (40)
380 KOG4499 Ca2+-binding protein R 97.3 0.038 8.2E-07 50.6 17.9 161 301-464 73-263 (310)
381 PF14783 BBS2_Mid: Ciliary BBS 97.3 0.013 2.9E-07 47.5 13.6 101 290-398 2-109 (111)
382 COG3204 Uncharacterized protei 97.2 0.15 3.3E-06 48.6 21.7 191 283-475 81-304 (316)
383 PF07995 GSDH: Glucose / Sorbo 97.2 0.22 4.8E-06 50.1 24.9 66 499-564 253-330 (331)
384 KOG2395 Protein involved in va 97.2 0.0049 1.1E-07 62.6 12.4 139 303-483 350-500 (644)
385 PF05694 SBP56: 56kDa selenium 97.2 0.33 7E-06 49.3 25.1 219 298-518 86-393 (461)
386 PF10647 Gmad1: Lipoprotein Lp 97.2 0.21 4.5E-06 48.2 23.4 189 374-563 25-231 (253)
387 COG5276 Uncharacterized conser 97.2 0.23 4.9E-06 47.3 29.1 271 287-567 86-367 (370)
388 KOG3621 WD40 repeat-containing 97.2 0.0036 7.8E-08 65.6 11.6 138 418-556 39-186 (726)
389 KOG4441 Proteins containing BT 97.2 0.035 7.5E-07 60.0 19.8 232 296-535 282-553 (571)
390 KOG4441 Proteins containing BT 97.1 0.027 5.8E-07 60.9 18.4 217 340-562 284-534 (571)
391 KOG1897 Damage-specific DNA bi 97.0 0.79 1.7E-05 50.7 27.1 270 288-565 584-894 (1096)
392 PHA02713 hypothetical protein; 96.9 0.095 2.1E-06 56.7 20.5 199 352-561 273-523 (557)
393 KOG4640 Anaphase-promoting com 96.9 0.0052 1.1E-07 63.7 9.7 90 455-548 21-114 (665)
394 KOG2444 WD40 repeat protein [G 96.9 0.0014 3.1E-08 59.6 4.7 138 344-485 33-179 (238)
395 TIGR03074 PQQ_membr_DH membran 96.8 0.44 9.6E-06 53.1 24.8 112 299-413 194-354 (764)
396 PF05096 Glu_cyclase_2: Glutam 96.8 0.52 1.1E-05 44.9 24.9 178 290-475 47-251 (264)
397 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.12 2.5E-06 42.1 14.3 99 375-477 2-108 (111)
398 COG3490 Uncharacterized protei 96.6 0.25 5.4E-06 46.8 17.7 169 380-558 43-244 (366)
399 KOG2079 Vacuolar assembly/sort 96.6 0.033 7.1E-07 61.5 13.7 101 298-402 98-202 (1206)
400 COG3204 Uncharacterized protei 96.6 0.61 1.3E-05 44.6 20.3 201 325-556 81-300 (316)
401 PF14727 PHTB1_N: PTHB1 N-term 96.6 1.1 2.4E-05 46.2 31.0 259 299-565 37-356 (418)
402 PHA03098 kelch-like protein; P 96.4 0.18 3.9E-06 54.6 18.2 197 340-545 294-528 (534)
403 KOG3598 Thyroid hormone recept 96.4 0.003 6.5E-08 70.6 4.1 6 12-17 2103-2108(2220)
404 KOG2444 WD40 repeat protein [G 96.4 0.0086 1.9E-07 54.7 6.4 100 466-567 70-175 (238)
405 PF03022 MRJP: Major royal jel 96.3 1.2 2.5E-05 43.9 21.6 163 396-558 35-254 (287)
406 KOG2377 Uncharacterized conser 96.3 0.51 1.1E-05 47.7 18.6 121 286-408 65-190 (657)
407 COG4257 Vgb Streptogramin lyas 96.2 1.1 2.5E-05 42.4 22.9 249 290-549 64-326 (353)
408 PF10647 Gmad1: Lipoprotein Lp 96.1 0.65 1.4E-05 44.7 18.3 144 414-560 25-186 (253)
409 PF12894 Apc4_WD40: Anaphase-p 96.1 0.02 4.2E-07 38.9 5.4 34 287-321 11-44 (47)
410 PLN02153 epithiospecifier prot 96.1 0.96 2.1E-05 45.7 20.3 173 385-561 86-325 (341)
411 PF14870 PSII_BNR: Photosynthe 96.0 1.8 3.8E-05 42.7 29.1 222 329-563 16-255 (302)
412 PF02333 Phytase: Phytase; In 96.0 2.1 4.6E-05 43.3 22.6 185 298-485 67-292 (381)
413 KOG1897 Damage-specific DNA bi 95.9 3.7 8E-05 45.7 28.0 269 287-565 629-938 (1096)
414 PRK13684 Ycf48-like protein; P 95.9 2.2 4.7E-05 43.0 29.2 267 287-567 45-329 (334)
415 TIGR02604 Piru_Ver_Nterm putat 95.9 2.4 5.2E-05 43.3 23.8 140 331-475 15-204 (367)
416 PF10214 Rrn6: RNA polymerase 95.9 3.9 8.5E-05 46.3 25.7 176 327-529 77-277 (765)
417 TIGR03074 PQQ_membr_DH membran 95.8 1.9 4.2E-05 48.2 22.6 66 387-452 262-354 (764)
418 PF15390 DUF4613: Domain of un 95.8 0.42 9.2E-06 49.9 15.9 170 373-549 20-212 (671)
419 KOG2079 Vacuolar assembly/sort 95.8 0.12 2.5E-06 57.4 12.5 72 285-358 128-202 (1206)
420 PHA03098 kelch-like protein; P 95.8 0.38 8.3E-06 52.0 17.0 181 297-485 293-513 (534)
421 KOG3598 Thyroid hormone recept 95.7 0.0098 2.1E-07 66.8 4.3 10 33-42 2039-2048(2220)
422 TIGR02604 Piru_Ver_Nterm putat 95.7 0.59 1.3E-05 47.8 16.9 102 455-558 72-202 (367)
423 COG4257 Vgb Streptogramin lyas 95.7 2.1 4.5E-05 40.7 20.7 207 332-552 64-288 (353)
424 PRK13684 Ycf48-like protein; P 95.6 2.8 6.2E-05 42.2 26.0 221 329-564 45-283 (334)
425 COG3823 Glutamine cyclotransfe 95.6 0.73 1.6E-05 41.8 14.4 177 340-518 55-248 (262)
426 TIGR03548 mutarot_permut cycli 95.5 1.9 4E-05 43.3 19.5 100 385-485 73-196 (323)
427 KOG2247 WD40 repeat-containing 95.4 0.012 2.7E-07 59.3 3.4 137 333-472 38-177 (615)
428 TIGR03118 PEPCTERM_chp_1 conse 95.4 2.8 6E-05 40.6 24.9 194 291-485 26-281 (336)
429 PF14761 HPS3_N: Hermansky-Pud 95.4 1.8 4E-05 39.7 16.9 49 300-349 29-79 (215)
430 KOG2280 Vacuolar assembly/sort 95.4 2.4 5.3E-05 45.7 19.9 180 308-495 63-255 (829)
431 COG1520 FOG: WD40-like repeat 95.2 4.3 9.2E-05 41.6 29.8 150 296-450 66-225 (370)
432 KOG3630 Nuclear pore complex, 95.1 0.24 5.1E-06 55.3 12.0 142 331-473 102-262 (1405)
433 PF07995 GSDH: Glucose / Sorbo 95.0 3.7 7.9E-05 41.3 19.9 77 446-523 245-330 (331)
434 PLN02153 epithiospecifier prot 95.0 4.5 9.8E-05 40.8 21.3 105 298-408 32-172 (341)
435 PF10168 Nup88: Nuclear pore c 95.0 7.5 0.00016 43.3 24.3 30 329-359 84-113 (717)
436 KOG1916 Nuclear protein, conta 95.0 0.035 7.6E-07 60.0 5.2 117 282-402 127-254 (1283)
437 COG5276 Uncharacterized conser 94.9 3.9 8.4E-05 39.3 26.9 252 263-527 105-368 (370)
438 PHA02790 Kelch-like protein; P 94.8 1.2 2.5E-05 47.5 16.2 177 298-484 271-471 (480)
439 PF12894 Apc4_WD40: Anaphase-p 94.7 0.11 2.4E-06 35.3 5.4 31 329-359 11-41 (47)
440 PLN00033 photosystem II stabil 94.7 6.1 0.00013 40.7 34.5 109 454-566 280-396 (398)
441 PF12234 Rav1p_C: RAVE protein 94.5 1.2 2.7E-05 48.0 15.5 109 455-567 30-154 (631)
442 PF14870 PSII_BNR: Photosynthe 94.5 5.3 0.00012 39.3 28.7 266 287-566 16-301 (302)
443 PF14781 BBS2_N: Ciliary BBSom 94.3 2 4.3E-05 36.3 13.0 116 334-451 3-134 (136)
444 COG5167 VID27 Protein involved 94.3 1.6 3.5E-05 44.8 14.7 140 340-483 478-632 (776)
445 PF14727 PHTB1_N: PTHB1 N-term 94.2 7.9 0.00017 40.0 28.5 222 341-567 37-316 (418)
446 PLN02193 nitrile-specifier pro 94.2 7.2 0.00016 41.4 20.6 149 384-535 228-417 (470)
447 TIGR03547 muta_rot_YjhT mutatr 94.2 7.2 0.00016 39.4 20.4 41 521-561 291-332 (346)
448 COG3292 Predicted periplasmic 94.1 4.1 8.9E-05 42.7 17.3 267 287-565 164-443 (671)
449 PF05694 SBP56: 56kDa selenium 94.0 8.2 0.00018 39.6 30.3 218 340-558 86-392 (461)
450 PF10168 Nup88: Nuclear pore c 93.9 4.6 0.0001 44.9 18.7 80 286-365 83-185 (717)
451 KOG4659 Uncharacterized conser 93.8 16 0.00035 42.3 23.1 22 536-557 658-679 (1899)
452 KOG2377 Uncharacterized conser 93.8 1 2.2E-05 45.6 12.0 104 453-558 65-172 (657)
453 PF14761 HPS3_N: Hermansky-Pud 93.7 3.8 8.3E-05 37.7 14.8 50 425-475 29-80 (215)
454 PRK14131 N-acetylneuraminic ac 93.7 9.4 0.0002 39.2 20.2 14 396-409 190-203 (376)
455 PRK14131 N-acetylneuraminic ac 93.6 8.2 0.00018 39.6 19.4 39 522-560 314-353 (376)
456 PHA02790 Kelch-like protein; P 93.4 3.8 8.3E-05 43.6 17.0 168 385-560 272-456 (480)
457 PF12234 Rav1p_C: RAVE protein 93.4 2 4.3E-05 46.5 14.4 122 279-403 21-156 (631)
458 COG1520 FOG: WD40-like repeat 93.4 10 0.00022 38.7 28.6 187 343-533 70-273 (370)
459 KOG1916 Nuclear protein, conta 93.3 0.092 2E-06 57.0 4.4 120 289-409 185-329 (1283)
460 KOG2247 WD40 repeat-containing 93.3 0.0075 1.6E-07 60.8 -3.4 140 417-562 39-181 (615)
461 COG3823 Glutamine cyclotransfe 93.1 5.3 0.00011 36.4 14.3 171 298-475 55-249 (262)
462 TIGR03548 mutarot_permut cycli 93.0 8.5 0.00019 38.5 18.1 107 298-408 72-199 (323)
463 PF14781 BBS2_N: Ciliary BBSom 92.8 3.6 7.8E-05 34.8 12.1 106 423-533 9-130 (136)
464 PF07569 Hira: TUP1-like enhan 92.5 0.86 1.9E-05 42.7 9.2 62 505-567 17-93 (219)
465 KOG1983 Tomosyn and related SN 92.5 1.5 3.2E-05 50.7 12.7 226 289-532 37-268 (993)
466 PF10313 DUF2415: Uncharacteri 92.4 0.59 1.3E-05 30.8 5.5 31 288-318 1-34 (43)
467 PF10395 Utp8: Utp8 family; I 92.4 6 0.00013 42.9 16.1 163 287-451 129-314 (670)
468 COG5167 VID27 Protein involved 92.2 3.4 7.4E-05 42.6 13.3 136 422-560 477-624 (776)
469 PF07250 Glyoxal_oxid_N: Glyox 92.0 2.4 5.3E-05 40.2 11.6 128 437-564 49-194 (243)
470 KOG2280 Vacuolar assembly/sort 92.0 8.4 0.00018 41.8 16.4 175 351-533 64-251 (829)
471 TIGR03547 muta_rot_YjhT mutatr 91.8 13 0.00027 37.6 17.7 54 297-350 62-128 (346)
472 PLN02193 nitrile-specifier pro 91.8 20 0.00043 38.0 27.7 171 385-560 176-387 (470)
473 PF10395 Utp8: Utp8 family; I 91.7 23 0.0005 38.6 23.8 195 336-533 34-264 (670)
474 KOG4659 Uncharacterized conser 91.6 32 0.00069 40.1 22.2 24 452-475 659-682 (1899)
475 KOG1900 Nuclear pore complex, 91.6 2 4.4E-05 49.2 12.1 73 494-567 174-270 (1311)
476 PF07569 Hira: TUP1-like enhan 91.4 1.6 3.5E-05 40.9 9.7 67 418-484 16-96 (219)
477 PF14655 RAB3GAP2_N: Rab3 GTPa 91.1 2.8 6.1E-05 43.2 11.8 51 322-373 300-350 (415)
478 PF08728 CRT10: CRT10; InterP 91.1 6.8 0.00015 43.0 15.0 110 457-567 103-244 (717)
479 PF05935 Arylsulfotrans: Aryls 91.0 16 0.00034 38.8 17.8 142 307-454 126-313 (477)
480 KOG3630 Nuclear pore complex, 90.9 2.3 5.1E-05 47.9 11.5 121 434-557 124-261 (1405)
481 KOG4460 Nuclear pore complex, 90.5 4.5 9.8E-05 41.9 12.3 28 457-484 168-199 (741)
482 KOG1898 Splicing factor 3b, su 90.5 22 0.00048 40.3 18.2 80 350-433 911-995 (1205)
483 PF13449 Phytase-like: Esteras 90.4 21 0.00045 35.8 22.5 62 454-515 146-231 (326)
484 PF10433 MMS1_N: Mono-function 90.0 30 0.00065 37.1 27.6 243 296-549 219-503 (504)
485 PF10433 MMS1_N: Mono-function 89.6 32 0.0007 36.8 21.9 224 338-566 219-473 (504)
486 PF10313 DUF2415: Uncharacteri 89.4 1.7 3.7E-05 28.7 5.6 32 373-404 1-34 (43)
487 PF11498 Activator_LAG-3: Tran 89.3 0.11 2.4E-06 50.0 0.0 14 47-60 284-297 (468)
488 KOG1900 Nuclear pore complex, 89.1 3.1 6.7E-05 47.8 10.8 152 376-529 82-273 (1311)
489 PF08801 Nucleoporin_N: Nup133 89.0 13 0.00029 38.7 15.3 31 499-529 190-220 (422)
490 PF06752 E_Pc_C: Enhancer of P 88.9 0.19 4.2E-06 45.7 1.3 10 80-89 4-13 (230)
491 PF08728 CRT10: CRT10; InterP 88.7 5.2 0.00011 43.9 11.9 104 298-402 113-245 (717)
492 smart00036 CNH Domain found in 88.2 28 0.00062 34.4 28.1 229 298-536 12-278 (302)
493 KOG4369 RTK signaling protein 88.2 0.42 9.1E-06 53.4 3.4 8 24-31 1787-1794(2131)
494 PF07250 Glyoxal_oxid_N: Glyox 87.9 13 0.00027 35.4 12.7 139 312-452 49-207 (243)
495 KOG1520 Predicted alkaloid syn 87.7 9.8 0.00021 38.2 12.2 43 516-558 195-237 (376)
496 PLN00033 photosystem II stabil 87.7 37 0.0008 35.0 25.0 108 414-525 282-396 (398)
497 PF10214 Rrn6: RNA polymerase 87.3 49 0.0011 37.5 19.3 117 287-405 145-278 (765)
498 KOG2109 WD40 repeat protein [G 87.0 1.6 3.5E-05 46.2 6.6 79 274-352 302-391 (788)
499 COG5290 IkappaB kinase complex 86.8 27 0.00058 38.4 15.4 93 416-512 250-350 (1243)
500 KOG4460 Nuclear pore complex, 85.8 21 0.00046 37.3 13.5 26 330-355 104-129 (741)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.3e-49 Score=365.98 Aligned_cols=284 Identities=26% Similarity=0.450 Sum_probs=258.5
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee-eeecccCccEEEEEECC-----CCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK-TNLEEHSSLITDVRFSP-----SMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~-~~l~~h~~~V~~i~fsp-----~~~~l~s~s~dg 351 (567)
....+.++|...|.|++|+|||+.||+|+.||.|++||.++++.+ ..|.+|...|++++|.| ..++|++++.||
T Consensus 148 Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 148 TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCC
Confidence 456788999999999999999999999999999999999988765 67999999999999966 567999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEE---------
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMR--------- 419 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~--------- 419 (567)
.|+|||+.. +.++..+.+|+.+|+|++|-. ..+|++|+.|++|++|+...|.+.+.++++. +.++
T Consensus 228 ~vrIWd~~~-~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRt 304 (480)
T KOG0271|consen 228 SVRIWDTKL-GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRT 304 (480)
T ss_pred CEEEEEccC-ceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhc
Confidence 999999987 889999999999999999974 5589999999999999999999998888753 3333
Q ss_pred --EecCCC-------------------------EEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEE
Q 008393 420 --FQPHLG-------------------------RYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 420 --~~~~~~-------------------------~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s 471 (567)
|.+.+. ++++++.|.++.+|+.... +++..+.+|..-|+.+.|+||++++|+
T Consensus 305 gaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS 384 (480)
T KOG0271|consen 305 GAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS 384 (480)
T ss_pred cccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEE
Confidence 333333 4899999999999998654 688899999999999999999999999
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEec
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVST 549 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~sp 549 (567)
++-| .|++||-++| +.+..+.+|-..|+.++|+.|.++|++++.|.++++||+++.+.. .+.+|...|.++.|+|
T Consensus 385 aSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp 461 (480)
T KOG0271|consen 385 ASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP 461 (480)
T ss_pred eecccceeeeeCCCc---chhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC
Confidence 9999 9999999888 889999999999999999999999999999999999999998877 7889999999999999
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
||..+++|+.|..++||.
T Consensus 462 DG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 462 DGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CCceeecCCCceEEEeec
Confidence 999999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-46 Score=351.40 Aligned_cols=287 Identities=22% Similarity=0.403 Sum_probs=263.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+-..+.||.++|.|++|+|+|+.||+|+.|.++++||+.+..+.++.++|...|.|++|+|||+.||+|+.||+|++||
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD 185 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~ 430 (567)
..++....+.+.+|...|++|+|.|- ...++++++.||.|+|||+..+.++..+.++ ++|++|--+ +.++++
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg 264 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG 264 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence 99988888999999999999999763 2347789999999999999999999998876 456666543 788899
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc-----------CCC-------------------------CEEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWD-----------PSG-------------------------ELLASVSE 474 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s-----------p~g-------------------------~~l~s~s~ 474 (567)
+.|++|++|+...|++...+++|...|+.|+++ |.+ ..|++|++
T Consensus 265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD 344 (480)
T KOG0271|consen 265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD 344 (480)
T ss_pred CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence 999999999999999999999999999999876 223 35999999
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~ 552 (567)
| ++.+|+-.. ..+++..+.+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-+.|+.++|+.|.+
T Consensus 345 d~tlflW~p~~--~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR 422 (480)
T KOG0271|consen 345 DFTLFLWNPFK--SKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR 422 (480)
T ss_pred CceEEEecccc--cccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence 9 999999753 34688899999999999999999999999999999999999999988 8899999999999999999
Q ss_pred EEEEEECCCcEEEcC
Q 008393 553 YVASASHDKFVKLWK 567 (567)
Q Consensus 553 ~l~s~s~Dg~I~iWd 567 (567)
+|++|+.|.++++||
T Consensus 423 LlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 423 LLVSGSKDSTLKVWD 437 (480)
T ss_pred EEEEcCCCceEEEEE
Confidence 999999999999996
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-44 Score=342.36 Aligned_cols=285 Identities=27% Similarity=0.438 Sum_probs=265.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~i 355 (567)
.....--+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|. +..||+|+.||+|++
T Consensus 166 ~l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 166 ELVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 333444567899999999999999999999999999999999999999999999999999997 568999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 432 (567)
|++++ ..++..+.+|...|..++|+|+|.+|. |++.|.+-++||++++..+....+ ++..++|.++|..+++|+.
T Consensus 246 w~~~~-e~~l~~l~gH~~RVs~VafHPsG~~L~-TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl 323 (459)
T KOG0272|consen 246 WKLSQ-ETPLQDLEGHLARVSRVAFHPSGKFLG-TASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL 323 (459)
T ss_pred eccCC-CcchhhhhcchhhheeeeecCCCceee-ecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc
Confidence 99997 678899999999999999999987555 999999999999999988766655 5788999999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-CC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-TY 510 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-~~ 510 (567)
|..-+|||+++++++..+.+|..+|.+|+|+|+|..||+|+.| +++|||++.. ..+..+..|.+-|..+.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCC
Confidence 9999999999999999999999999999999999999999999 9999999865 56899999999999999999 78
Q ss_pred CeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.++++|.
T Consensus 401 ~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 89999999999999999999888 7899999999999999999999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.2e-42 Score=312.18 Aligned_cols=290 Identities=20% Similarity=0.382 Sum_probs=262.9
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
..++..+.|++|.++|+++.|++|.++|++++.||.+.|||.-+...++.+.-...+|..++|+|.++++|+|+.|....
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence 34566689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC--C---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEec-CCC
Q 008393 355 VWDADNP--G---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQP-HLG 425 (567)
Q Consensus 355 iwd~~~~--~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~-~~~ 425 (567)
||++.+. . ...+.+.+|.+.+.|+.|..|+ +++ +++.|.++.+||+++++.+..|.++ +..+.+.| +++
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~il-T~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HIL-TGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ceE-ecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 9999853 1 3456789999999999999864 455 9999999999999999999999875 56778999 889
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
.+++++.|+..++||++.+.++..|.+|+..|++++|.|+|.-+++|++| +.++||++...+ ..+..-.....+|+++
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv 279 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV 279 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence 99999999999999999999999999999999999999999999999999 999999998633 2223333445679999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+..|++|++|..|..+.+||.-.++.+ .+.+|++.|++|..+|||..|+||++|..||||.
T Consensus 280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999888877 8889999999999999999999999999999995
No 5
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=7.1e-40 Score=298.17 Aligned_cols=286 Identities=24% Similarity=0.424 Sum_probs=262.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+..+.+|++.|+.+.|+|+|.+||+||.|..|.+|++ ...+....+++|.+.|..+.|.+|++.|++++.|.+|+.||
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 44567899999999999999999999999999999995 46677888999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+++ ++.++.+++|..-|.+++-..-|..++++++.|+++++||+++..+++.+ +...+.+.|...+..+++++-|+.
T Consensus 119 ~~t-G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ 197 (338)
T KOG0265|consen 119 AET-GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND 197 (338)
T ss_pred ccc-ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence 999 88899999999999999987788899999999999999999999999999 567889999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCC-ceEEEeecCCC----ceEEEEEeCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEG-ECVHELSCNGN----KFHSCVFHPT 509 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~-~~i~~~~~~~~----~i~~~~~sp~ 509 (567)
|++||++.....+.+.+|.+.|+.|..+++|.++.+-+.| ++++||++..... .++..+.++.. ....|+|+|+
T Consensus 198 ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 198 IKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 9999999999999999999999999999999999999999 9999999876443 34666666533 3567899999
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+.++-+|+.|..+++||......+ .+.+|.+.|+++.|+|...+|.+++.|.+|++
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred CCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 999999999999999999885555 89999999999999999999999999999876
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-40 Score=315.25 Aligned_cols=244 Identities=25% Similarity=0.420 Sum_probs=231.0
Q ss_pred eeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
..+..|++|++.|.++.|+|. +..||+|+.||++++|++++..++..+.+|...|..++|+|+|++|+|++.|.+-++
T Consensus 208 ~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRl 287 (459)
T KOG0272|consen 208 NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRL 287 (459)
T ss_pred ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhh
Confidence 467789999999999999997 679999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~ 432 (567)
||+.+ +..+....||...|.+|+|.+||. ++++|+.|..-+|||++++.++..+.++ +..+.|+|+|-.+++++.
T Consensus 288 WD~~t-k~ElL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 288 WDLET-KSELLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ccccc-chhhHhhcccccccceeEecCCCc-eeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC
Confidence 99998 666777889999999999999986 7889999999999999999999999875 567899999999999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
|++++|||++....++++.+|.+-|+.|+|+| .|.+|++++.| +++||.-++. .++..+.+|++.|.++.+++++
T Consensus 366 Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~ 442 (459)
T KOG0272|consen 366 DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDS 442 (459)
T ss_pred CCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCC
Confidence 99999999999999999999999999999998 88999999999 9999998776 8899999999999999999999
Q ss_pred CeEEEEEcCCeEEEEE
Q 008393 511 PSLLVIGCYQSLELWN 526 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd 526 (567)
.+|++++.|.++++|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 9999999999999995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7e-38 Score=282.50 Aligned_cols=283 Identities=21% Similarity=0.374 Sum_probs=244.3
Q ss_pred eeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCC-----CCeeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 278 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTD-----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~-----~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....+++|++.|+.++..+. -..|++++.|.++.+|++. .|...+.+++|...|..+..++||++.++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345678999999999999987 4688999999999999875 5778899999999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecC--CC
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPH--LG 425 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~--~~ 425 (567)
++++||+.+ ++..+.|.+|...|.+++|++|...+ ++|+.|.+|++|++...-....... -+.+++|+|. ..
T Consensus 86 ~lrlWDl~~-g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p 163 (315)
T KOG0279|consen 86 TLRLWDLAT-GESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP 163 (315)
T ss_pred eEEEEEecC-CcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence 999999998 68889999999999999999997655 4999999999999986654444333 4789999999 67
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
.++.++.|++|++||+++.+....+.+|.+.++.++++|||.++++|+.| .+.+||++.+ +++..+. +...|.++
T Consensus 164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl 239 (315)
T KOG0279|consen 164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL 239 (315)
T ss_pred EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence 78889999999999999999999999999999999999999999999999 9999999876 5555554 67889999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-E----eccc-----cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-T----LTAH-----EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~----~~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+|+...|+++ .+..|+|||+.++.++ . +.+. .....+++|++||..|++|-.|+.|++|.
T Consensus 240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 999987655554 4456999999998766 1 1122 23456789999999999999999999994
No 8
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=8.1e-39 Score=297.05 Aligned_cols=287 Identities=23% Similarity=0.398 Sum_probs=263.3
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+++..+.+.+|.+.|.|+++.|...+|++|+.|++|+|||+.++++..++.+|...|..+++++...||++++.|+.|+
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~ 431 (567)
.||++. .+.++.+.+|-..|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++ +..+.+.|.+..+++++
T Consensus 219 CwDLe~-nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 219 CWDLEY-NKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred EEechh-hhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec
Confidence 999998 778899999999999999999854 6669999999999999999999998875 56777899999999999
Q ss_pred CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 432 AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
.|++|++||++.++....+..|+..|.+++.+|....+|+++.|.|+-|++..+ ..+..+.+|...+.++....|+
T Consensus 297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~- 372 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG- 372 (460)
T ss_pred CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc-
Confidence 999999999999999999999999999999999999999999999999999776 6667788999999999998877
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEe---------ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTL---------TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~---------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++|+.+|.|.+||.+++..+.. ...+..|.+.+|...|..|++|..|.+|++|+
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence 588899999999999999876521 12345789999999999999999999999995
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-38 Score=295.58 Aligned_cols=288 Identities=26% Similarity=0.507 Sum_probs=268.2
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.+.+...+.+|..+|+.+-|+|+-..+++++.|++|++||..++++...+++|.+.|.+|.|+..|++|++++.|-.+++
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L 176 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL 176 (406)
T ss_pred CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence 34577788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEEC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 432 (567)
||.++...+++.+.+|...|.+++|.|.|++++ +|+.|.+|+.|++.++.++++|.++. ..++.+.+|..+++++.
T Consensus 177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il-S~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL-SCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eeHHHHHHHHHHhcCcccceeeEEEEecCCeee-ecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 999986678888999999999999999986555 99999999999999999999999874 55667788888888888
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC---------------CCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS---------------GELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~---------------g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|.+|++|-+.++.+...+..|+.+|.+++|.|. +.++++++.| +|++||+.++ .|+.++.+
T Consensus 256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g 332 (406)
T KOG0295|consen 256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG 332 (406)
T ss_pred CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence 999999999999999999999999999999763 2599999999 9999999888 89999999
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.+.|..++|+|.|+||+++..|+++++||+++..++ .+.+|...|+++.|+.+..+++||+-|-.+++|.
T Consensus 333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 9999999999999999999999999999999999988 7889999999999999999999999999999995
No 10
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.3e-37 Score=274.56 Aligned_cols=266 Identities=21% Similarity=0.439 Sum_probs=239.8
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccCCCcEEEE
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l 378 (567)
-+|+++++|.+|++|...+|.+..++......|+.+...|+++.||+++.-. |++||+.+... ++.++.+|...|+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCCceeEEeccCCceEEE
Confidence 4899999999999999999999999999999999999999999999998765 99999998554 789999999999999
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC-CCC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HTK 455 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~ 455 (567)
.|..+|+ ++++|++||+++|||++...+.+.+. .+++.+..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus 90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9999976 55699999999999999988776654 5789999999999999999999999999999877666543 456
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC---CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSG---SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~---~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.|.++...|||.+|+.+... ..++|++-+. .....+..+..|...+..|.++|++++|++++.|.+++||+.++..
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~ 248 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF 248 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence 89999999999999998887 9999999764 3456778899999999999999999999999999999999999872
Q ss_pred EE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 TM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. .+.+|...+..++||.||+||+||+.|+.+++|+
T Consensus 249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence 22 6789999999999999999999999999999996
No 11
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-36 Score=293.34 Aligned_cols=361 Identities=20% Similarity=0.330 Sum_probs=291.3
Q ss_pred CCCcCeEEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEeecc---CCCCCCCCCccceeccCCc
Q 008393 202 TTSKPLMMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH---DDTDPRDAGGRGMDVSQGF 275 (567)
Q Consensus 202 ~~~~~~~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~~d~~~~~~~~~~~~ 275 (567)
..+.....|+|.|.+.+. ++.+++||...-+.+.+-+...-.|...|---.+-.. ....+++..++.+-...|
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG- 137 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG- 137 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC-
Confidence 334566789999998766 4677999998754444444333333332211111000 012334445555555555
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
..+..+.||...|.+++|-|.-- ++++|+.|+.|.+|+-..++...+++.|...|.|+.|+|||+++++++.||+|.
T Consensus 138 --~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 138 --NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred --CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 34667889999999999999664 789999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee----EEEEecCCCEE
Q 008393 355 VWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA----QMRFQPHLGRY 427 (567)
Q Consensus 355 iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~l 427 (567)
+||-.+ ++.+..+. +|.+.|.+|+|+||+..++ +++.|.+++|||+.+.++++++..+.. .+-.--..+.|
T Consensus 216 iyDGkt-ge~vg~l~~~~aHkGsIfalsWsPDs~~~~-T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l 293 (603)
T KOG0318|consen 216 IYDGKT-GEKVGELEDSDAHKGSIFALSWSPDSTQFL-TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL 293 (603)
T ss_pred EEcCCC-ccEEEEecCCCCccccEEEEEECCCCceEE-EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence 999988 66677776 8999999999999988776 999999999999999999998875432 23222337899
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC-----------------------
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG----------------------- 483 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~----------------------- 483 (567)
++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+.| .|.-|+..
T Consensus 294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE 373 (603)
T ss_pred EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence 999999999999999999999999999999999999999999999999 99999986
Q ss_pred --------------------------------------------------------------------------------
Q 008393 484 -------------------------------------------------------------------------------- 483 (567)
Q Consensus 484 -------------------------------------------------------------------------------- 483 (567)
T Consensus 374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~ 453 (603)
T KOG0318|consen 374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP 453 (603)
T ss_pred CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence
Q ss_pred -------------------CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCe
Q 008393 484 -------------------SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLI 542 (567)
Q Consensus 484 -------------------~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V 542 (567)
.+........+..|...+++++|+||+.+|+++...+.+.+||+.+.+.. .+.-|...|
T Consensus 454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI 533 (603)
T KOG0318|consen 454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI 533 (603)
T ss_pred CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence 01011111233446778999999999999999999999999999988775 556799999
Q ss_pred eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 543 AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+++|+|+..+||||+.|-+|.||+
T Consensus 534 ~~~aWsP~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 534 NCVAWSPNNKLVATGSLDTNVIIYS 558 (603)
T ss_pred EEEEeCCCceEEEeccccceEEEEE
Confidence 9999999999999999999999995
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.5e-36 Score=314.42 Aligned_cols=284 Identities=30% Similarity=0.551 Sum_probs=254.7
Q ss_pred eeeecc-CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRA-STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~-h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...+.+ |...|.|+.|+++|++|++++.++.+++|+..+++ ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw 230 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW 230 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence 445544 48899999999999999999999999999998888 788889999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d 433 (567)
|+...+..++++.+|...|++++|+|++ .++++|+.|++|+|||++++++++.+.+ .+..++|++++..+++++.|
T Consensus 231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 9966678999999999999999999998 7888999999999999999999999876 46778899999999999999
Q ss_pred CeEEEEECCCCe--EEEEecCCCCC--eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---eEEEE
Q 008393 434 NVVSILDAETQA--CRLSLQGHTKP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSCV 505 (567)
Q Consensus 434 g~I~i~d~~~~~--~~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~~ 505 (567)
+.|++||+.++. +...+.++... +++++|+|++++|++++.| .+++||+..+ .++..+.+|... +....
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~ 386 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT 386 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence 999999999998 56777777665 9999999999999999999 9999999876 566666666654 44455
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEE--CCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASAS--HDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s--~Dg~I~iWd 567 (567)
+++.+.++++|+.|+.|++||+.++..+ .+.+| ...+..+++++...++++++ .|+.|++|+
T Consensus 387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence 6789999999999999999999987666 78889 89999999999999999998 789999995
No 13
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.5e-37 Score=271.36 Aligned_cols=280 Identities=23% Similarity=0.327 Sum_probs=247.2
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~f 337 (567)
.+.|.++|.|...+| .+.++++...+.|..+.+.||+++||+++ .-.|++||+.+++ ++.++.+|...|+++.|
T Consensus 16 A~YDhTIRfWqa~tG---~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 16 AGYDHTIRFWQALTG---ICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred ccCcceeeeeehhcC---eEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEE
Confidence 456778999999999 68888888889999999999999999987 5689999998765 58999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G 413 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~ 413 (567)
..+|+++++|++||+++|||++. ..+.+.+ .|..+|+++..+|+...|| +|..+|.|++||+.+..+...+- .
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~-~~~qR~~-~~~spVn~vvlhpnQteLi-s~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRS-LSCQRNY-QHNSPVNTVVLHPNQTELI-SGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred eecCeEEEecCCCceEEEEeccC-cccchhc-cCCCCcceEEecCCcceEE-eecCCCcEEEEEccCCccccccCCCCCc
Confidence 99999999999999999999997 4444444 5889999999999988777 99999999999999987766543 3
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCC------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
.+..+.+.|++..++++...|..++|++-+. +++.+++.|.+.+..+.++||+++||+++.| +++||+.++.
T Consensus 169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~- 247 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF- 247 (311)
T ss_pred ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-
Confidence 5678899999999999999999999998653 5677889999999999999999999999999 9999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
.+.-..+.+|...+..|+|+.|+.||++++.|+.+++||+..++.+ ...+|.....|++..
T Consensus 248 -~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 248 -FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred -eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 4566778889999999999999999999999999999999999877 677888887777753
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=6.1e-39 Score=302.78 Aligned_cols=276 Identities=22% Similarity=0.440 Sum_probs=248.7
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-..+|..+.|.|+|+.|++|+..|.+.+|+..++.....+..|...|+++.|++++.++++|+.+|.|++|+..- ..+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm--nnV 172 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM--NNV 172 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch--hhh
Confidence 356889999999999999999999999999988888888899999999999999999999999999999999874 334
Q ss_pred EEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 366 RTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 366 ~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
+.+.+|. ..|++++|+|+.. .|++|++||+|+|||....+..+.+.++ +.++.|+|..+.+++++.|+.|++||.
T Consensus 173 k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDp 251 (464)
T KOG0284|consen 173 KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDP 251 (464)
T ss_pred HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecC
Confidence 5555554 9999999999755 5569999999999999999888888764 688999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~d 519 (567)
+++.++.++.+|+..|..+.|.+++++|++++.| .+++||+++. +.+..+.+|...++++.|+|-. ..|.+|+.|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999999999999999999999999999999 9999999865 6677888999999999999955 566778899
Q ss_pred CeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.|..|.+...+.+ .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 99999999855544 4458999999999999999999999999999994
No 15
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3e-36 Score=292.84 Aligned_cols=296 Identities=23% Similarity=0.371 Sum_probs=252.4
Q ss_pred ceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec---ccCccEEEEEECCCCCeE
Q 008393 268 GMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE---EHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 268 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~---~h~~~V~~i~fsp~~~~l 344 (567)
......|.+|+...+++.|..-|.|+.|+|||+++|+++.||+|.+||-.+++.+..|. +|.+.|.++.|+||++.|
T Consensus 171 ~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~ 250 (603)
T KOG0318|consen 171 TVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF 250 (603)
T ss_pred eEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE
Confidence 34455689999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCC------------------------------------------ceeEEeccCCCcEEEEEEcC
Q 008393 345 ATSSFDKTVRVWDADNPG------------------------------------------YSLRTFMGHSASVMSLDFHP 382 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~------------------------------------------~~~~~~~~h~~~V~~l~~~p 382 (567)
++++.|.+++|||+.+.. ..+..+.+|...|+++..++
T Consensus 251 ~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~ 330 (603)
T KOG0318|consen 251 LTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP 330 (603)
T ss_pred EEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC
Confidence 999999999999987531 11344558999999999999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEE-------------------------------E--------------------
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRV-------------------------------F-------------------- 411 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~-------------------------------~-------------------- 411 (567)
++.+ |++|+.||.|.-|++.++..-+. +
T Consensus 331 d~~~-i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~ 409 (603)
T KOG0318|consen 331 DGKT-IYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK 409 (603)
T ss_pred CCCE-EEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce
Confidence 9865 55999999999999865432110 0
Q ss_pred ----------------------e-----------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCCCCC
Q 008393 412 ----------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKP 456 (567)
Q Consensus 412 ----------------------~-----------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~ 456 (567)
. -...+++++|++..+++|+.|+.|++|.+.... ....+..|.++
T Consensus 410 ~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~ 489 (603)
T KOG0318|consen 410 GLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAA 489 (603)
T ss_pred eEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCC
Confidence 0 012346788999999999999999999998754 33456679999
Q ss_pred eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--
Q 008393 457 IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-- 533 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-- 533 (567)
|++++|+||+.|||++... .|.+||+.+... .......|...|.+++|+|+..++++|+.|-.|.||+++.....
T Consensus 490 iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ 567 (603)
T KOG0318|consen 490 ITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII 567 (603)
T ss_pred ceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE
Confidence 9999999999999999988 999999987643 44556668999999999999999999999999999999876443
Q ss_pred EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+|...|+.+.|- +...|++.+.|..|++|+
T Consensus 568 iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~ 600 (603)
T KOG0318|consen 568 IKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN 600 (603)
T ss_pred eccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence 456899999999995 556899999999999995
No 16
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-36 Score=303.51 Aligned_cols=353 Identities=22% Similarity=0.301 Sum_probs=293.2
Q ss_pred CcCeEEEecCCCccccCC---CceeeeCCCcchhhcccccccCCCCCCceEEeeccCC-------CCCCCCCccceeccC
Q 008393 204 SKPLMMFGTDGAGTLTSP---SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-------TDPRDAGGRGMDVSQ 273 (567)
Q Consensus 204 ~~~~~~~~~dg~~~~~~~---~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~d~~~~~~~~~~ 273 (567)
+.-.|.|.|.|..+++.+ .+++||...+.....+.-+.. -|.+.+.+.. .+..|+.+++|+...
T Consensus 107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG------vVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 107 PVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG------VVSSLLFHPHWNRWLLASGATDGTVRVWNLND 180 (775)
T ss_pred CeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCc------eEEEEEeCCccchhheeecCCCceEEEEEccc
Confidence 344688888885555544 449999998754443332221 2444444433 456788999999986
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-----------------------------
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN----------------------------- 324 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~----------------------------- 324 (567)
.-+ ++..++.|.+.|++++|++|+..+++++.|..|.|||+...+...+
T Consensus 181 ~~t--cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~ 258 (775)
T KOG0319|consen 181 KRT--CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGG 258 (775)
T ss_pred Cch--HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecC
Confidence 654 7889999999999999999999999999999999997642111100
Q ss_pred --------------------------------------------------------------------------------
Q 008393 325 -------------------------------------------------------------------------------- 324 (567)
Q Consensus 325 -------------------------------------------------------------------------------- 324 (567)
T Consensus 259 ~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 259 SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence
Q ss_pred ----------------------ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC---CceeEEeccCCCcEEEEE
Q 008393 325 ----------------------LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP---GYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 325 ----------------------l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~ 379 (567)
+.+|++.|.++....+|-+|++|+.|.++++|.++++ ..++....+|.+.|.+++
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava 418 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVA 418 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceee
Confidence 1126777777775556779999999999999988542 234556779999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeee---E---------EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCT---R---------VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~---------~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
++..+..++++++.|++|++|++...+.. . .+...+++++++|+...+++++.|.+.+||+++.....
T Consensus 419 ~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 419 GSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred ecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 99999999999999999999999873211 1 12346899999999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 448 LSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
.++.+|...|+++.|++..+++++++.| +|+||.+.+. .|+.++.+|...|..+.|-.++..|++++.||-|++|+
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 9999999999999999999999999999 9999999776 89999999999999999999999999999999999999
Q ss_pred CCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 527 MSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++++. ++.+|...|++++.++.+.+++||+.||.|.+|+
T Consensus 576 ikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 576 IKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 9999988 8999999999999999999999999999999995
No 17
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.5e-35 Score=285.90 Aligned_cols=282 Identities=30% Similarity=0.566 Sum_probs=251.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
..+++|.++|.+++|++++++|++++.||.|++|++.+++....+..|...+..+.|++++++|++++.||.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 56779999999999999999999999999999999999988889999999999999999999999999999999999987
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
...+..+..|...|.++.|++++ .++++++.|+.|++||+.+++....+.. .+..+.|++++..+++++.++.|.
T Consensus 83 -~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~ 160 (289)
T cd00200 83 -GECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK 160 (289)
T ss_pred -ccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence 56677788899999999999984 4666777799999999998888777663 478899999966666666699999
Q ss_pred EEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 438 ILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
+||+++++.+..+..|...|.+++|+++++.|++++.+ .|++||++.+ ..+..+..+...+.++.|++++.+++++
T Consensus 161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 99999999888999999999999999999888888878 9999999765 5666666778899999999998877777
Q ss_pred EcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus 238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77999999999977665 6678889999999999999999999999999997
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-35 Score=296.04 Aligned_cols=288 Identities=23% Similarity=0.383 Sum_probs=253.8
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC-CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHD-KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d-g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..|..++.+.-...+|..++|+..|++||.|+.. |.+.||++.+...+....+|...+++++++|||.+||+|+.||.|
T Consensus 295 P~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 295 PDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred CCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 3456777888788899999999999999998764 899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~l~~ 429 (567)
+|||..+ +.++.++..|+..|+.+.|+..++.++ +.+-||+|+.||+...++.++|..+ ..+++..|.|..+++
T Consensus 375 KvWn~~S-gfC~vTFteHts~Vt~v~f~~~g~~ll-ssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~A 452 (893)
T KOG0291|consen 375 KVWNTQS-GFCFVTFTEHTSGVTAVQFTARGNVLL-SSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCA 452 (893)
T ss_pred EEEeccC-ceEEEEeccCCCceEEEEEEecCCEEE-EeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEe
Confidence 9999998 899999999999999999999977555 8899999999999999999999764 467888998888888
Q ss_pred EECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
|+.|. .|.+|++.+|+.+-.+.||+++|.+++|+|++..|++++.| +|++||+-... ..+.++. ....+..++|.
T Consensus 453 G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~--~~vEtl~-i~sdvl~vsfr 529 (893)
T KOG0291|consen 453 GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS--GTVETLE-IRSDVLAVSFR 529 (893)
T ss_pred eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC--ceeeeEe-eccceeEEEEc
Confidence 88876 89999999999999999999999999999999999999999 99999996431 2333333 46678999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCCcEE-E--------------------eccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 508 PTYPSLLVIGCYQSLELWNMSENKTM-T--------------------LTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~~~~-~--------------------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+|+.|+++..||.|.+||...+..+ . -.+....++.+++++||.+|++||....|+||
T Consensus 530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY 609 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY 609 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence 99999999999999999998765432 0 11234578999999999999999999999998
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 610 ~ 610 (893)
T KOG0291|consen 610 D 610 (893)
T ss_pred E
Confidence 5
No 19
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.3e-35 Score=261.58 Aligned_cols=280 Identities=22% Similarity=0.420 Sum_probs=238.7
Q ss_pred eeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCC---Ceeeeeec-ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 278 KEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDT---LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~---~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
..++.+.+|++.|..++|+|- |..||+|+.|+.|++|+... ..++..+. +|+..|+.++|+|.|++|++|+.|.+
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 467889999999999999998 89999999999999999884 45555553 79999999999999999999999999
Q ss_pred EEEEEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC---eeeEEEeCC---eeEEEEecCCC
Q 008393 353 VRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG---SCTRVFKGG---TAQMRFQPHLG 425 (567)
Q Consensus 353 I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~---~~~~~~~~~---~~~~~~~~~~~ 425 (567)
+.||.-.. ..+++.++.||...|.|++|+++|+ ++++|+.|+.|.||.+... ++..++..+ +..+.|+|...
T Consensus 85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d 163 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED 163 (312)
T ss_pred EEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc
Confidence 99998663 2467889999999999999999986 5669999999999999854 455666654 56788999999
Q ss_pred EEEEEECCCeEEEEECC---CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 426 RYLAAAAENVVSILDAE---TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~---~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
.|++++.|++|++|+-. ...+..++.+|...|.+++|++.|..|+++++| +|+||...+. .-..|...+
T Consensus 164 lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~~ 236 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRAL 236 (312)
T ss_pred eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccce
Confidence 99999999999999876 458899999999999999999999999999999 9999986532 112355778
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCC---cEE-----EeccccCCeeEEEEecC-CCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSEN---KTM-----TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~---~~~-----~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iWd 567 (567)
+.+.|. ...|++++.|+.|++|..... ... ....|...|+++.|.|. .++|++|++||.|++|.
T Consensus 237 Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 237 YDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred Eeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 888998 446999999999999987643 111 34578999999999994 67899999999999994
No 20
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-35 Score=283.05 Aligned_cols=301 Identities=23% Similarity=0.348 Sum_probs=264.0
Q ss_pred CCCCCCccceeccC-Cccceeeeeec------c----CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc
Q 008393 260 DPRDAGGRGMDVSQ-GFSFKEANSVR------A----STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH 328 (567)
Q Consensus 260 ~~~d~~~~~~~~~~-~~~~~~~~~l~------~----h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h 328 (567)
+..+.+.|+|++.. .........|+ + .+..|++++|+.+|.+||+|..||.+++|+. +|..+.++..|
T Consensus 197 g~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l~~tl~~H 275 (524)
T KOG0273|consen 197 GSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNK-DGNLISTLGQH 275 (524)
T ss_pred cCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEec-Cchhhhhhhcc
Confidence 44566778888764 22222222222 1 2467999999999999999999999999986 67889999999
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.++|.++.|+.+|+||++++.|+++.+||..+ +.....+.-|..+-..+.|-.+. -|++++.|+.|+++.+....++
T Consensus 276 kgPI~slKWnk~G~yilS~~vD~ttilwd~~~-g~~~q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~P~ 352 (524)
T KOG0273|consen 276 KGPIFSLKWNKKGTYILSGGVDGTTILWDAHT-GTVKQQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDRPV 352 (524)
T ss_pred CCceEEEEEcCCCCEEEeccCCccEEEEeccC-ceEEEeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCCcc
Confidence 99999999999999999999999999999987 66777788888887888887553 4668999999999999998888
Q ss_pred EEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC---------CEEEEEeCC-
Q 008393 409 RVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---------ELLASVSED- 475 (567)
Q Consensus 409 ~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g---------~~l~s~s~d- 475 (567)
.++.+ .+.++.|+|.+..|++++.|++++||......+...+.+|...|..+.|+|+| ..|++++.|
T Consensus 353 ~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 353 KTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred eeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 88765 57889999999999999999999999999999999999999999999999965 478889988
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+|++||+..+ .+++.+..|..+|++++|+|+|+++++|+.||.|.+|+.++++.+.-....+.|..++|+.+|.+|.
T Consensus 433 tV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~ 509 (524)
T KOG0273|consen 433 TVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLG 509 (524)
T ss_pred eEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEE
Confidence 9999999777 8999999999999999999999999999999999999999999998777888899999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
.+-.|+.+++-|
T Consensus 510 ~~~sd~~vcvld 521 (524)
T KOG0273|consen 510 ACASDGSVCVLD 521 (524)
T ss_pred EEecCCCceEEE
Confidence 999999998753
No 21
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.8e-35 Score=284.07 Aligned_cols=281 Identities=24% Similarity=0.481 Sum_probs=246.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCC--Ceee--eeec----------ccCccEEEEEECCCCCe
Q 008393 279 EANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDT--LKSK--TNLE----------EHSSLITDVRFSPSMPR 343 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~--~~~~--~~l~----------~h~~~V~~i~fsp~~~~ 343 (567)
.++.++ |+.+|.+++|+|-.. +|++|+.|-..++|++.. .... ..|+ ..+..|++++|+.+|..
T Consensus 171 ~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~ 249 (524)
T KOG0273|consen 171 KAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTL 249 (524)
T ss_pred ceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCe
Confidence 445556 999999999999665 999999999999999864 1111 1111 12457999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRF 420 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~ 420 (567)
||+|+.||.++||+.. +..+.++..|.++|.+|.|+..|.+++ +++.|+++.+||..++.....|.-+. ..+.|
T Consensus 250 LatG~~~G~~riw~~~--G~l~~tl~~HkgPI~slKWnk~G~yil-S~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 250 LATGSEDGEARIWNKD--GNLISTLGQHKGPIFSLKWNKKGTYIL-SGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEEeecCcEEEEEecC--chhhhhhhccCCceEEEEEcCCCCEEE-eccCCccEEEEeccCceEEEeeeeccCCccceEE
Confidence 9999999999999997 567789999999999999999988666 99999999999999999888776543 34667
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+ ..+++.+.|+.|+++-+....++.++.+|.++|.+|.|.|.|.+|+++++| +++||..... .+++.+..|..
T Consensus 327 ~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hsk 402 (524)
T KOG0273|consen 327 QSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSK 402 (524)
T ss_pred ecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhcc
Confidence 655 788899999999999999999999999999999999999999999999999 9999998654 78888999999
Q ss_pred ceEEEEEeCCCC---------eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 500 KFHSCVFHPTYP---------SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 500 ~i~~~~~sp~~~---------~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+.+.|+|.|. .+++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+|||+|+.||.|.||+
T Consensus 403 ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws 480 (524)
T KOG0273|consen 403 EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS 480 (524)
T ss_pred ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence 999999999753 6899999999999999999888 7889999999999999999999999999999995
No 22
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-35 Score=265.80 Aligned_cols=263 Identities=19% Similarity=0.320 Sum_probs=224.7
Q ss_pred CCCCCCccceeccCC-ccc-eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 260 DPRDAGGRGMDVSQG-FSF-KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~-~~~-~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
..+|..+-+|++... ..+ ..++.|+||...|..++.++||++.++++.|+++++||+.+++....|.+|...|.+++|
T Consensus 34 asrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAF 113 (315)
T ss_pred cccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEe
Confidence 346666777776543 112 347889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEeCC
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFKGG 414 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~~~ 414 (567)
++|.+.|++|+.|.+|++|++.. .+..++.. +.+.|.|++|+|+. +-+|++++.|++|++||+++.+....+.++
T Consensus 114 s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh 191 (315)
T KOG0279|consen 114 STDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGH 191 (315)
T ss_pred cCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccc
Confidence 99999999999999999999985 33344433 37899999999985 567779999999999999999988887654
Q ss_pred ---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceE
Q 008393 415 ---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 415 ---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
++.+.++|+|..++.|+.||.+.+||++.++.++.+. |...|.+++|+|+..+|+.+....|+|||+.++ .++
T Consensus 192 ~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~---~~v 267 (315)
T KOG0279|consen 192 SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATSIKIWDLESK---AVV 267 (315)
T ss_pred cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCceEEEeccch---hhh
Confidence 6788999999999999999999999999999987776 788999999999988887777669999999876 334
Q ss_pred EEeec---------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 492 HELSC---------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 492 ~~~~~---------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.++.. ......+++|+++|..|++|..|+.|++|.+.
T Consensus 268 ~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 268 EELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 33322 23446788999999999999999999999875
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=9.6e-37 Score=294.01 Aligned_cols=290 Identities=19% Similarity=0.361 Sum_probs=252.3
Q ss_pred cceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcE
Q 008393 276 SFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
+-+.+..+.+|+..|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|+.+|..|++++.|+.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFL 282 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceee
Confidence 4457789999999999999999 899999999999999999876 89999999999999999999999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~ 430 (567)
++||+++ +.++..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+. +.+..+.|.+.+.+++++
T Consensus 283 KlwDtET-G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFiss 360 (503)
T KOG0282|consen 283 KLWDTET-GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISS 360 (503)
T ss_pred eeecccc-ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeee
Confidence 9999999 66666665 456789999999998888899999999999999999887765 457788999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC--CceEEEEE
Q 008393 431 AAENVVSILDAETQACRLSLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG--NKFHSCVF 506 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~--~~i~~~~~ 506 (567)
+.|+.++||+.+....+..... +.....+|..+|+++++++-+.| .|.+|.+...........+.+|. +.-..|.|
T Consensus 361 SDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 361 SDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred ccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9999999999998866654332 23345688999999999999999 99999976543333344455553 44567799
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
+|||.+|++|..+|.+++||.++.+.+ .+.+|.+++..+.|+|.. ..||+|+.||.|++|+
T Consensus 441 SpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999998888 888999999999999965 5799999999999997
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5e-36 Score=283.21 Aligned_cols=287 Identities=20% Similarity=0.321 Sum_probs=242.9
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC---CeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~---~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
.+++.+...+..|++.|+-+.||++|+|||+++.|.+..+|++.. .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus 211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 456778899999999999999999999999999999999998753 56688999999999999999999999999999
Q ss_pred CcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCC
Q 008393 351 KTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLG 425 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~ 425 (567)
..+.+||+.+ +.....+. +|...+.+++|.|||..++ +|+.|+.|..||+.... +...+ ..+.++++.++|.
T Consensus 291 e~~~lwDv~t-gd~~~~y~~~~~~S~~sc~W~pDg~~~V-~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 291 EVLSLWDVDT-GDLRHLYPSGLGFSVSSCAWCPDGFRFV-TGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred HheeeccCCc-chhhhhcccCcCCCcceeEEccCCceeE-ecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCc
Confidence 9999999998 55444443 4568899999999998766 99999999999998543 22222 3467899999999
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---e
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---F 501 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i 501 (567)
.+++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.-.+ .|++||++.. ..+..+.+|.-. |
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiI 443 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFII 443 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEE
Confidence 99999999999999999876664444 44789999999999999998888 9999999743 566666666443 3
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
.+|-=-.+..++++|+.|+.|+||+..+++.+ .+.+|...|++++|+|.. .++|+||+||+||||.
T Consensus 444 rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 444 RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 33333345588999999999999999999988 889999999999999965 5799999999999994
No 25
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-34 Score=268.69 Aligned_cols=299 Identities=19% Similarity=0.255 Sum_probs=264.7
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|...-+|+..++. ....+.+|+..|+|+.|+.||.+||||+.+|.|.||+..++.....+...-..|.-+.|+
T Consensus 81 TGGgDD~AflW~~~~ge---~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WH 157 (399)
T KOG0296|consen 81 TGGGDDLAFLWDISTGE---FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWH 157 (399)
T ss_pred ecCCCceEEEEEccCCc---ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEec
Confidence 55667777899999984 778899999999999999999999999999999999999999999998778889999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
|.+..|+.|+.||.|.+|.+.+ +...+.+.+|..++++=.|.|+|++++ ++..||+|++||+.++..+..++. .
T Consensus 158 p~a~illAG~~DGsvWmw~ip~-~~~~kv~~Gh~~~ct~G~f~pdGKr~~-tgy~dgti~~Wn~ktg~p~~~~~~~e~~~ 235 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPS-QALCKVMSGHNSPCTCGEFIPDGKRIL-TGYDDGTIIVWNPKTGQPLHKITQAEGLE 235 (399)
T ss_pred ccccEEEeecCCCcEEEEECCC-cceeeEecCCCCCcccccccCCCceEE-EEecCceEEEEecCCCceeEEecccccCc
Confidence 9999999999999999999998 467789999999999999999988666 999999999999999999888773 4
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--------CCCCCeeEEEE---cCCCCEEEEEeCC-eEEEEeC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--------GHTKPIDSVCW---DPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--------~h~~~V~~l~~---sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..++.++..+..++.+..++.+++.+..+++.+.... .+...+.++.+ +..=.+.|+|+-| +|.|||+
T Consensus 236 ~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~ 315 (399)
T KOG0296|consen 236 LPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDL 315 (399)
T ss_pred CCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEec
Confidence 6778888888899999999999999999999888776 34444555554 4455688999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 483 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
... .++..-.|...|..+.|-+ ..+|++++.+|.|+.||.++|..+ .+.+|...|.+++++|++++++|++.|+
T Consensus 316 a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 316 AAS----TLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred ccc----hhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 764 3444455788899999999 788999999999999999999988 8899999999999999999999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
+.+||+
T Consensus 391 ~a~VF~ 396 (399)
T KOG0296|consen 391 TALVFE 396 (399)
T ss_pred eEEEEe
Confidence 999985
No 26
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.1e-33 Score=256.86 Aligned_cols=243 Identities=24% Similarity=0.442 Sum_probs=219.3
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
.++.+.-....|..++|+|.|+++|+|+-|+...||++.+. +..+.+.+|++.+.|+.|.+| ..|+|++.|.+
T Consensus 89 K~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 89 KVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred ceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 34455556788999999999999999999999999999855 456779999999999999985 58999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 429 (567)
..+||+++ +..+..|.+|.+.|.+|++.|...+.+++|+-|+..++||++.+.++..|.++ ++.++|.|++.-+++
T Consensus 168 CalWDie~-g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 168 CALWDIET-GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EEEEEccc-ceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 99999998 88889999999999999999944556779999999999999999999999874 688999999999999
Q ss_pred EECCCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 430 AAAENVVSILDAETQACRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++.|++.++||++....+..+.. ...+|++++|+..|++|++|..| ++.+||.-.+ +.+..+.+|++.|.++..
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~ 323 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGV 323 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEE
Confidence 99999999999999888877763 34579999999999999999999 9999999665 788899999999999999
Q ss_pred eCCCCeEEEEEcCCeEEEEE
Q 008393 507 HPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd 526 (567)
+|||..+++|+.|..|+||.
T Consensus 324 s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 324 SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CCCCcEEEecchhHheeecC
Confidence 99999999999999999994
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.4e-34 Score=289.99 Aligned_cols=352 Identities=19% Similarity=0.289 Sum_probs=281.3
Q ss_pred CeEEEecCCCccccCCC---ceeeeCCCcchhhcccccccCCCCCCceEEeeccC---CCCCCCCCccceeccCCcccee
Q 008393 206 PLMMFGTDGAGTLTSPS---NQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD---DTDPRDAGGRGMDVSQGFSFKE 279 (567)
Q Consensus 206 ~~~~~~~dg~~~~~~~~---~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~ 279 (567)
..++..||+..+++... .++|+..+|.++..+...-+ -+--...|-... .+++.|+.+++||+..+ ..
T Consensus 66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He---~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~---~~ 139 (775)
T KOG0319|consen 66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHE---APVITMAFDPTGTLLATGGADGRVKVWDIKNG---YC 139 (775)
T ss_pred heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccC---CCeEEEEEcCCCceEEeccccceEEEEEeeCC---EE
Confidence 35677778777766543 39999999977665553222 111122222222 25678889999999988 58
Q ss_pred eeeeccCCCCeEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCee-eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKS-KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~--~lasg~~dg~I~vwd~~~~~~-~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
...|+||.+.|.++.|.|+-+ +|++|..|+.+++||+.+... +.++..|...|+++.|.+|+..+++++.|..+.||
T Consensus 140 th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vw 219 (775)
T KOG0319|consen 140 THSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVW 219 (775)
T ss_pred EEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEe
Confidence 899999999999999999764 589999999999999985554 88889999999999999999999999999999999
Q ss_pred EcCCCCc-------------------------e-----------------------------------------------
Q 008393 357 DADNPGY-------------------------S----------------------------------------------- 364 (567)
Q Consensus 357 d~~~~~~-------------------------~----------------------------------------------- 364 (567)
|+..-.. .
T Consensus 220 d~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 220 DLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred ehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 7631000 0
Q ss_pred ----------------------------------------------------------eEEeccCCCcEEEEEEcCCCCe
Q 008393 365 ----------------------------------------------------------LRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 365 ----------------------------------------------------------~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
...+.+|...|.+++...+| .
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~ 378 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-D 378 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-c
Confidence 11233788888888855554 5
Q ss_pred EEEEEeCCCcEEEEECCCCee----eEEE---eCCeeEEEEecCC-CEEEEEECCCeEEEEECCCCe-----EE----EE
Q 008393 387 LICSCDGDGEIRYWSINNGSC----TRVF---KGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQA-----CR----LS 449 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~----~~~~---~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~-----~~----~~ 449 (567)
++++|+.|.++++|.++++.. +... ...+.+++++..+ ..|++++.|.++++|++...+ .+ ..
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 888999999999998854432 2222 3345667776554 457778889999999997721 11 13
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 450 LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 450 ~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
...|...|++++++|+.++||+|+.| +.+||+++.. .....+.+|...+.++.|++....+++++.|.+|+||.+.
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 35699999999999999999999999 9999999744 8899999999999999999999999999999999999999
Q ss_pred CCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..++ ++.+|...|..+.|-.+++.|++|+.||.|+||+
T Consensus 536 ~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 536 TFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred cceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 99998 8999999999999999999999999999999996
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-33 Score=281.26 Aligned_cols=359 Identities=19% Similarity=0.314 Sum_probs=298.5
Q ss_pred CCcCeEEEecCCCccccCCCc--eeeeCCCcchhhccccccc----CCCCCCceEEeeccCC----CCCCCCCccceecc
Q 008393 203 TSKPLMMFGTDGAGTLTSPSN--QLWDDKDLELRADMDRLVE----DGSLDDNVESFLSHDD----TDPRDAGGRGMDVS 272 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~~~~~--~~Wd~~~g~~~~~~~~~~~----~~~~~~~v~~~~~~~~----~~~~d~~~~~~~~~ 272 (567)
.....+.|||||+..+....+ ++|-....... .+.-|.- .+.+++-+..-++.|. .+.+|...|+|.+.
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw~~P~~~~~-~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~ 175 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIWHAPGEIKN-EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVD 175 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEEecCcchhc-ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEec
Confidence 345679999999998876655 89988754321 2222221 2455555555566554 56889999999887
Q ss_pred CCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------Cee--------
Q 008393 273 QGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-----------------------LKS-------- 321 (567)
Q Consensus 273 ~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-----------------------~~~-------- 321 (567)
.... -....+.+|++.|.++-|..+...+++.+.||.+.+|.... ++.
T Consensus 176 ~~k~-~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~ 254 (893)
T KOG0291|consen 176 GNKN-LFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWY 254 (893)
T ss_pred cccc-cceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEE
Confidence 6544 34567889999999999999999999999999999997651 111
Q ss_pred ---eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 322 ---KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 322 ---~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
+.-+......|++.+|++..+.|++|-..|...+|++.. -.+++.+.-....|..+.|+..|+.+.+.|+.-|.+.
T Consensus 255 k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl 333 (893)
T KOG0291|consen 255 KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL 333 (893)
T ss_pred EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence 011222346799999999999999999999999999987 6778888777789999999999998887888889999
Q ss_pred EEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 399 YWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 399 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
||++.+...+....+ .+.+++++|+|..+++|+.||.|+|||...+-|+.+|..|+..|+.++|+..|+.|++.+-|
T Consensus 334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 999999887776665 46889999999999999999999999999999999999999999999999999999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-EeccccCCeeEEEEecCC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg 551 (567)
+|+.||+... .+.+++... ...+.+++..|.|..+++|+.|. .|++|++.+|+.+ .+.+|+++|.+++|+|++
T Consensus 414 GtVRAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~ 490 (893)
T KOG0291|consen 414 GTVRAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDG 490 (893)
T ss_pred CeEEeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcccc
Confidence 9999999655 666666654 34578889999999999998887 8999999999999 788999999999999999
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|+++++|.+||+||
T Consensus 491 ~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 491 SLLASGSWDKTVRIWD 506 (893)
T ss_pred CeEEeccccceEEEEE
Confidence 9999999999999996
No 29
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.1e-34 Score=292.29 Aligned_cols=246 Identities=26% Similarity=0.451 Sum_probs=225.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-------------------------------eeeeeecc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-------------------------------KSKTNLEE 327 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-------------------------------~~~~~l~~ 327 (567)
+..++......++|+.|++|+++||.|..|..|++|.+... ....++.+
T Consensus 370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G 449 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG 449 (707)
T ss_pred EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence 44556666778999999999999999999999999987631 12244678
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
|.++|..+.|+|+.++|++++.|++||+|.+++ ..++..++||..+|+++.|+|.| ++|+|++.|++-++|.......
T Consensus 450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t-~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P 527 (707)
T KOG0263|consen 450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-WSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP 527 (707)
T ss_pred CCCceeeeeecccccceeeccCCcceeeeeccc-ceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence 999999999999999999999999999999998 77888999999999999999996 6777999999999999999999
Q ss_pred eEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 408 TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 408 ~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
++.|-++ +.|+.|+|+..++++|+.|.+|++||+.+|..++.|.||.++|.+++|+|+|++|++|++| .|++||+.
T Consensus 528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 9988764 6789999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 484 SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 484 ~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
++ ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..
T Consensus 608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 87 67788888999999999999999999999999999999864
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=7.1e-33 Score=310.48 Aligned_cols=283 Identities=18% Similarity=0.305 Sum_probs=238.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----e----eeeeecccCccEEEEEECCC-CCeEEEEeCCCc
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----K----SKTNLEEHSSLITDVRFSPS-MPRLATSSFDKT 352 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~----~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~ 352 (567)
.+..|.+.|.+++|+++|++||+|+.|+.|+||++... . ....+. +...|.+++|++. +.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 35569999999999999999999999999999997532 1 122233 3467999999874 779999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEe-cCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQ-PHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~-~~~~~l~~ 429 (567)
|+|||+.+ +..+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+.. .+.++.|. +++..+++
T Consensus 557 v~lWd~~~-~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~lat 635 (793)
T PLN00181 557 VQVWDVAR-SQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAF 635 (793)
T ss_pred EEEEECCC-CeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEE
Confidence 99999987 6777888999999999999985456777999999999999999988877654 45677775 46788999
Q ss_pred EECCCeEEEEECCCCe-EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC---CCceEEEeecCCCceEEE
Q 008393 430 AAAENVVSILDAETQA-CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS---EGECVHELSCNGNKFHSC 504 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~-~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~---~~~~i~~~~~~~~~i~~~ 504 (567)
++.|+.|++||+++.+ .+..+.+|...|.++.|. ++.+|++++.| .|++||++... ....+..+.+|...+..+
T Consensus 636 gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v 714 (793)
T PLN00181 636 GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV 714 (793)
T ss_pred EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE
Confidence 9999999999998865 567788999999999997 77899999999 99999997532 235678888999999999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE--------------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM--------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--------------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++++.+|++|+.|+.|++|+....... ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 99999999999999999999998655322 1233556799999999999999999999999996
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-33 Score=282.17 Aligned_cols=336 Identities=19% Similarity=0.293 Sum_probs=263.3
Q ss_pred CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCC-----CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEE
Q 008393 221 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHF 295 (567)
Q Consensus 221 ~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 295 (567)
..+.+||.++|++...+-..... ..+.+....++ .+..|+.+++|+...+ .....+.+|...|+++.|
T Consensus 43 E~vn~WdlRtge~~~~l~~~~~k----~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~---~~~~tfngHK~AVt~l~f 115 (888)
T KOG0306|consen 43 EQVNIWDLRTGEIEKKLILLKKK----AEVTCLRSSDDILLLAVGYADGSVQIFSLESE---EILITFNGHKAAVTTLKF 115 (888)
T ss_pred ccEeEEeeecchhhhhhhhhccc----ceEEEeeccCCcceEEEEecCceEEeeccCCC---ceeeeecccccceEEEEE
Confidence 34689999999765544432221 22445555444 4578999999998877 677889999999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec------
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM------ 369 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~------ 369 (567)
+..|..||+|+.|+.|.|||+-...-...+++|.+.|+...|..+.++|++.+.|+.|++||+++ ..++.+..
T Consensus 116 d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~t-qhCf~Thvd~r~Ei 194 (888)
T KOG0306|consen 116 DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLET-QHCFETHVDHRGEI 194 (888)
T ss_pred cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccc-ceeeeEEecccceE
Confidence 99999999999999999999999899999999999999999999888999999999999998764 33333333
Q ss_pred --------------------------------------------------------------------------------
Q 008393 370 -------------------------------------------------------------------------------- 369 (567)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (567)
T Consensus 195 w~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~ 274 (888)
T KOG0306|consen 195 WALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR 274 (888)
T ss_pred EEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 008393 370 -------------------------------------------------------------------------------- 369 (567)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (567)
T Consensus 275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s 354 (888)
T KOG0306|consen 275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENS 354 (888)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccC
Confidence
Q ss_pred ----------------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEEC
Q 008393 370 ----------------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 370 ----------------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 432 (567)
+|...|.+++++.+. .++++| ..+.|++|+..+.+|++++... +.+..|.|.+.+++.|..
T Consensus 355 ~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~Sg-a~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k 432 (888)
T KOG0306|consen 355 GKTSPEADRTSNIEIGGHRSDVRSLCVSSDS-ILLASG-AGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTK 432 (888)
T ss_pred CCCCccccccceeeeccchhheeEEEeecCc-eeeeec-CCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEecc
Confidence 455555556655442 233233 3556666666666666666543 344557777777777777
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----CCceEE----EeecCCCceE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-----EGECVH----ELSCNGNKFH 502 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-----~~~~i~----~~~~~~~~i~ 502 (567)
.|.+.+||+.....+.++..|.+.|++++.+||++.+++|+.| +|++||+.-.. ..+.+. ..-.-...|.
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 7777777777777777778899999999999999999999999 99999985321 111111 1112356799
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++.++||+++|+++--|.+|+||-+.+-+.. .+.+|.-+|.|+.++||+++++|||.|.+|+||
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW 577 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW 577 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence 9999999999999999999999999998876 899999999999999999999999999999999
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.6e-34 Score=291.83 Aligned_cols=260 Identities=28% Similarity=0.491 Sum_probs=219.5
Q ss_pred EEEecCCCcccc---CCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeeeec
Q 008393 208 MMFGTDGAGTLT---SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 284 (567)
Q Consensus 208 ~~~~~dg~~~~~---~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 284 (567)
.-|++|+..++. ...+++|......+. .+.+ ..++...+....|...+..|...+ ...+++.
T Consensus 384 a~fSddssmlA~Gf~dS~i~~~Sl~p~kl~----~lk~--------~~~l~~~d~~sad~~~~~~D~~~~---~~~~~L~ 448 (707)
T KOG0263|consen 384 AEFSDDSSMLACGFVDSSVRVWSLTPKKLK----KLKD--------ASDLSNIDTESADVDVDMLDDDSS---GTSRTLY 448 (707)
T ss_pred EeecCCcchhhccccccEEEEEecchhhhc----cccc--------hhhhccccccccchhhhhccccCC---ceeEEee
Confidence 345566664433 345699988753221 1111 122233333333443444444333 3456699
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
||.++|+.+.|+|+.++|++++.|++|++|.+.+..++-.+++|..+|+++.|+|.|-|+||++.|++.++|..+. ..+
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~-~~P 527 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH-NKP 527 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 788
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
++.+.+|-+.|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.++ +.+++|+|+|.++++|+.|+.|.+||+
T Consensus 528 lRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred hhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 999999999999999999966 5669999999999999999999999874 688999999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.+++.+..+.+|++.|.+|.|+.+|.+||+|+.| .|++||+..
T Consensus 607 ~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 607 ANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred CCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999999999999999999999999 999999964
No 33
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.8e-34 Score=265.28 Aligned_cols=259 Identities=27% Similarity=0.504 Sum_probs=237.1
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CeeeeeecccCccEEEEEECC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT-LKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~-~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+|.++++||..++ +....++||++.|..++|+..|++||+++.|-.+.+||.++ .++++.+.+|...|.+++|-|
T Consensus 127 s~d~tikv~D~~tg---~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P 203 (406)
T KOG0295|consen 127 SEDATIKVFDTETG---ELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLP 203 (406)
T ss_pred cCCceEEEEEccch---hhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEe
Confidence 35678999999888 45889999999999999999999999999999999999987 778888999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE---EeCCee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV---FKGGTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~---~~~~~~ 416 (567)
.|.+|++++.|.+|+.|++++ +.++.++.+|...|..++.+.|| .++++|+.|.+|++|-+.++.|... +...+.
T Consensus 204 ~gd~ilS~srD~tik~We~~t-g~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vE 281 (406)
T KOG0295|consen 204 LGDHILSCSRDNTIKAWECDT-GYCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQCKAELREHEHPVE 281 (406)
T ss_pred cCCeeeecccccceeEEeccc-ceeEEeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccchhhhhhhccccceE
Confidence 999999999999999999999 89999999999999999999996 5888999999999999999966544 445677
Q ss_pred EEEEecCC---------------CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEE
Q 008393 417 QMRFQPHL---------------GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVW 480 (567)
Q Consensus 417 ~~~~~~~~---------------~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iw 480 (567)
+++|.|.. ..+..++.|++|++||+.++.++.++.+|...|..++|+|.|+||+++.+| ++++|
T Consensus 282 ci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvw 361 (406)
T KOG0295|consen 282 CIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVW 361 (406)
T ss_pred EEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEE
Confidence 77776532 367788889999999999999999999999999999999999999999999 99999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
|+.+. .|...+..|..-++++.|+.+..++++|+-|..+++|..
T Consensus 362 dl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 362 DLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred Eeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99776 899999999999999999999999999999999999974
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.4e-33 Score=246.13 Aligned_cols=279 Identities=19% Similarity=0.331 Sum_probs=240.6
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++.+.+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|..|.+||
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEe---CCeeEEEEecCCCEEEEEEC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFK---GGTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~---~~~~~~~~~~~~~~l~~~~~ 432 (567)
+.+ ++.++.+.+|.+.|+.+.|+.+ ..++++|+.|..+++||.++.. ++..+. ..+..+. -.+..+++++.
T Consensus 88 V~T-Gkv~Rr~rgH~aqVNtV~fNee-sSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~--v~~heIvaGS~ 163 (307)
T KOG0316|consen 88 VNT-GKVDRRFRGHLAQVNTVRFNEE-SSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSID--VAEHEIVAGSV 163 (307)
T ss_pred ccc-CeeeeecccccceeeEEEecCc-ceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEE--ecccEEEeecc
Confidence 999 8899999999999999999977 4578899999999999998754 445443 3444444 44678999999
Q ss_pred CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCC
Q 008393 433 ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPT 509 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~ 509 (567)
||+++.||++.+.....+.+ .+|++++|+++++.++.++.| +|++.|-.+| +.+..+++|.+. -..|++...
T Consensus 164 DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs 238 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS 238 (307)
T ss_pred CCcEEEEEeecceeehhhcC--CcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence 99999999999987666654 589999999999999999999 9999999888 666677777654 345678888
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-EeccccCC-eeEEEEecCCCEEEEEECCCcEEEc
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL-IAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
...++.|+.||.|++||+.....+ .+..+... |.+++++|....|+++.. +.+.+|
T Consensus 239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence 889999999999999999998887 56666666 899999998877777764 345555
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-34 Score=272.48 Aligned_cols=275 Identities=25% Similarity=0.454 Sum_probs=233.0
Q ss_pred CCcCeEEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCcccee
Q 008393 203 TSKPLMMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKE 279 (567)
Q Consensus 203 ~~~~~~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 279 (567)
...+.+.|.|+|++++++ +...||+.. .|..
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~----------------------------------------------~fnF 130 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGT----------------------------------------------SFNF 130 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCc----------------------------------------------eeeH
Confidence 356789999999988764 445666543 2333
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
...+..|..+|.++.|+++|.++++|..+|.|++|+..- ..+..+. .|...|++++|+|+...|+++++||+|+|||.
T Consensus 131 EtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf 209 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDF 209 (464)
T ss_pred HHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEec
Confidence 445779999999999999999999999999999999754 4444444 45599999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.. .+..+.+.+|.-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++.. .+..+.|++++++|++++.|..
T Consensus 210 ~~-~kee~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~ 287 (464)
T KOG0284|consen 210 RM-PKEERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS 287 (464)
T ss_pred cC-CchhheeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce
Confidence 87 45556779999999999999984 5888999999999999999999877554 5677889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
+++||+++.+.+..+++|+..|++++|+| ...+|++|+.| .|..|.+...+ .....-..|...|++++|+|-|..|
T Consensus 288 ~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil 365 (464)
T KOG0284|consen 288 CKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHIL 365 (464)
T ss_pred EEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeE
Confidence 99999999999999999999999999999 56688888888 99999986332 2223334688999999999999999
Q ss_pred EEEEcCCeEEEEECC
Q 008393 514 LVIGCYQSLELWNMS 528 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~ 528 (567)
++|+.|.++++|.-.
T Consensus 366 ~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 366 ATGSNDRTVRFWTRN 380 (464)
T ss_pred eecCCCcceeeeccC
Confidence 999999999999653
No 36
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.4e-33 Score=279.76 Aligned_cols=278 Identities=23% Similarity=0.420 Sum_probs=254.5
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.||...|.+++||.|...+++|+ .+.|++|+..+.++++++... .+.+..|.|.++++++|...|.+.+||+.+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS- 443 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLAS- 443 (888)
T ss_pred eeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeeh-
Confidence 5679999999999999998888875 679999999999999999754 799999999999999999999999999998
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-----Ce----------eeEEEeCCeeEEEEecCCCE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-----GS----------CTRVFKGGTAQMRFQPHLGR 426 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-----~~----------~~~~~~~~~~~~~~~~~~~~ 426 (567)
...+.++..|.+.|++++..|++..++ +|+.|.+|++||..- +. ....+...+.++.++|++.+
T Consensus 444 ~~l~Eti~AHdgaIWsi~~~pD~~g~v-T~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 444 ASLVETIRAHDGAIWSISLSPDNKGFV-TGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhccccceeeeeecCCCCceE-EecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 677888889999999999999988776 999999999999752 11 12234567889999999999
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
++++--|++|++|-+.+.+....+-||.-+|.|+..+||++++++|+.| +|+||-+.-| .|-..+..|...|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEEE
Confidence 9999999999999999999999999999999999999999999999999 9999999776 78888999999999999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|-|....++++|.|+.|+-||-...+.+ .+.+|...|+|++.+|+|.+++++++|.+|++|.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 9999999999999999999999887766 8999999999999999999999999999999995
No 37
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.7e-34 Score=267.24 Aligned_cols=264 Identities=22% Similarity=0.466 Sum_probs=230.3
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.....|+|+.+.. ..+++|..|++|+|||..+..+...+.+|++.|.|+.|. .+.|++|+.|.+|+|||+.+ +++
T Consensus 195 e~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~t-ge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNT-GEP 269 (499)
T ss_pred ccCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccC-Cch
Confidence 4567899999864 489999999999999999999999999999999999996 45999999999999999998 889
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEEeCC---eeEEEEecCCCEEEEEECCCeEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGG---TAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
+.++.+|...|..+.|+ +.++++|+.|.+|.+||+..... .+++.++ ++.+.|+ ..++++++.|.+|++
T Consensus 270 l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikv 344 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKV 344 (499)
T ss_pred hhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEE
Confidence 99999999999999998 34777999999999999987653 2334444 3444444 458999999999999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
|++.+++++.++.+|...|-|+.+ .|+++++|+.| +|++||+..| .|+..+.+|+.-|.++.|. .+.|++|+
T Consensus 345 W~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~krIVSGa 417 (499)
T KOG0281|consen 345 WSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKRIVSGA 417 (499)
T ss_pred Eeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cceeeecc
Confidence 999999999999999999988875 58999999999 9999999887 8999999999999999995 55799999
Q ss_pred cCCeEEEEECCCCcE----------EEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 518 CYQSLELWNMSENKT----------MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 518 ~dg~I~iwd~~~~~~----------~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.||+|++||+..+.- ..+..|.+.|..+.| |...|+++++|.+|.|||
T Consensus 418 YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 418 YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 999999999987642 156689999999999 466799999999999997
No 38
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.5e-34 Score=260.33 Aligned_cols=277 Identities=25% Similarity=0.437 Sum_probs=244.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--------ccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--------EHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
+..+-+.|..|+|||.||++|+.||.|.||+..+|+....++ -+..+|.|+.|+.|...|++|+.||.|+||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 445667899999999999999999999999999999887665 378899999999999999999999999999
Q ss_pred EcCCCCceeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEEC
Q 008393 357 DADNPGYSLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 432 (567)
.+.+ +.+++.|. .|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.|+++. +...|.++|..+++++.
T Consensus 291 ri~t-G~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSs 368 (508)
T KOG0275|consen 291 RIET-GQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASS 368 (508)
T ss_pred EEec-chHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecC
Confidence 9999 77777776 8999999999999988777 99999999999999999999999864 55679999999999999
Q ss_pred CCeEEEEECCCCeEEEEecC--CCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEee---cCCCceEEEE
Q 008393 433 ENVVSILDAETQACRLSLQG--HTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELS---CNGNKFHSCV 505 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~--h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~---~~~~~i~~~~ 505 (567)
||+|++|+.++.+|+.+|+. ...+|+++..-|. -..++.|... +|+|.++.. ..+..+. ..++.+.+++
T Consensus 369 DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 369 DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEE
Confidence 99999999999999988875 4457888887774 4567777766 999999853 4444443 3456788999
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|.|.++++.+.|+.++.|.+.+|+.. ++..|+..|..++-+|..+.||+-++||.+++|+
T Consensus 445 lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999998877 7889999999999999999999999999999996
No 39
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=270.55 Aligned_cols=281 Identities=21% Similarity=0.392 Sum_probs=255.7
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+.+..|+..|.|+.|+|...+++++-..|.|.||+.++...+..+.-...+|++..|-...+++++|++|..|+||+..
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC---eeEEEEecCC-CEEEEEECCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG---TAQMRFQPHL-GRYLAAAAEN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~---~~~~~~~~~~-~~l~~~~~dg 434 (567)
+ ...+..|..|...|.+|+.+|...+++ +++.|-.|++||.+.. .+..+|.++ +.+++|+|.. +.+++++-|+
T Consensus 86 t-~ekV~~FeAH~DyIR~iavHPt~P~vL-tsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDr 163 (794)
T KOG0276|consen 86 T-GEKVKTFEAHSDYIRSIAVHPTLPYVL-TSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDR 163 (794)
T ss_pred c-ceeeEEeeccccceeeeeecCCCCeEE-ecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccc
Confidence 8 788999999999999999999988666 9999999999999875 677888886 4678899965 5688888899
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCC--CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSG--ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g--~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+|++|.+....+..++.+|...|+|++|-+.| .+|++|++| +|+|||..+. .|+.++.+|...|..+.|+|.-.
T Consensus 164 TVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lp 240 (794)
T KOG0276|consen 164 TVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELP 240 (794)
T ss_pred cEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCc
Confidence 99999999999999999999999999998855 599999999 9999999765 89999999999999999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 512 SLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.|++|+.||+++||+..+-+.. ++.-..+.|+|++-.+.++.++.|.+.|.|.|
T Consensus 241 iiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 241 IIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred EEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 9999999999999999887766 55556678999999998889999998888754
No 40
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-31 Score=239.53 Aligned_cols=279 Identities=16% Similarity=0.247 Sum_probs=236.6
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.+.||..+++-+.|+.+|.+|++++.|.++.||-..+|+.+-++.+|.+.|+|+..+.+.++|++|+.|.++++||+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~t- 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVET- 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCC-
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEE----eCCCcEEEEECCC-------CeeeEEEe---CCeeEEEEecCCCEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSC----DGDGEIRYWSINN-------GSCTRVFK---GGTAQMRFQPHLGRY 427 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~----~~dg~I~iwd~~~-------~~~~~~~~---~~~~~~~~~~~~~~l 427 (567)
++.+..+. ...+|..+.|+.+|+.++++. +.-+.|.++|++. .++...+. ..++.+.|.|.+..+
T Consensus 84 Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 84 GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 66666665 578899999999988766543 2347899999983 34344443 346777899999999
Q ss_pred EEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 428 LAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+++..+|.|.+||++++ +.+.....|...|+.|++++|..++++++.| +-++||+.+. .++.++. ...++++.+
T Consensus 163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~-te~PvN~aa 238 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYT-TERPVNTAA 238 (327)
T ss_pred EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEee-eccccccee
Confidence 99999999999999998 5556667899999999999999999999999 9999999876 5666655 467899999
Q ss_pred EeCCCCeEEEEEcCCe--EEEEECCCCc------------EE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 506 FHPTYPSLLVIGCYQS--LELWNMSENK------------TM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~--I~iwd~~~~~------------~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++|...+++.|+.... |.--+.+.++ .+ .+.+|-++|++++|+|+|+..++|++||.|||.
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 9999888888876542 2222333332 22 678999999999999999999999999999974
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=268.17 Aligned_cols=242 Identities=24% Similarity=0.369 Sum_probs=218.3
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
++.+.-..-+|.++.|-...+++++|+.|..|+||+..+++.+..+..|.+.|++|+.+|...+++++++|-+|++||.+
T Consensus 48 VksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we 127 (794)
T KOG0276|consen 48 VKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE 127 (794)
T ss_pred eeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc
Confidence 34444456688899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC--CEEEEEECCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL--GRYLAAAAEN 434 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~--~~l~~~~~dg 434 (567)
....+..++.||...|.+++|+|....-+++++-|++|++|.+....+..++++ +++++.+-+.+ .++++|+.|.
T Consensus 128 ~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~ 207 (794)
T KOG0276|consen 128 NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL 207 (794)
T ss_pred CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence 988889999999999999999999999999999999999999999998888876 57888887754 5899999999
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.|+|||..+..|+.++.+|...|..++|+|.-.++++|++| +|+||+-.+- +....+......+++++-.+.+..+
T Consensus 208 tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i 284 (794)
T KOG0276|consen 208 TIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKI 284 (794)
T ss_pred eEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeE
Confidence 99999999999999999999999999999999999999999 9999998765 4555666677889999988888888
Q ss_pred EEEEcCCeEEE
Q 008393 514 LVIGCYQSLEL 524 (567)
Q Consensus 514 ~~~~~dg~I~i 524 (567)
++|..+|.|.+
T Consensus 285 ~vG~Deg~i~v 295 (794)
T KOG0276|consen 285 AVGFDEGSVTV 295 (794)
T ss_pred EEeccCCcEEE
Confidence 88877775544
No 42
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=238.92 Aligned_cols=274 Identities=18% Similarity=0.268 Sum_probs=242.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCC-CCeEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd 357 (567)
+.+++|..+|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 66789999999999999999999999999999999987765544 4589999999999885 45899999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCe
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
+.. +++........+. .-+.|+|+|.+++ .++.|..|.+.|.++.+..... +..+..++|+.+++.++.....|.
T Consensus 94 ~r~-~k~~~~i~~~~en-i~i~wsp~g~~~~-~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~ 170 (313)
T KOG1407|consen 94 IRS-GKCTARIETKGEN-INITWSPDGEYIA-VGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC 170 (313)
T ss_pred ecc-CcEEEEeeccCcc-eEEEEcCCCCEEE-EecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence 998 5565555544444 4578999988665 7889999999999998877654 456778889988888888888899
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|.|......+++..++.|.....||.|+|+|++||+|+.| .+.+||+.. ..|++.+..++-+|..+.|+.+|++|+
T Consensus 171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E---LiC~R~isRldwpVRTlSFS~dg~~lA 247 (313)
T KOG1407|consen 171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE---LICERCISRLDWPVRTLSFSHDGRMLA 247 (313)
T ss_pred EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH---hhhheeeccccCceEEEEeccCcceee
Confidence 9999999999999999999999999999999999999999 999999954 488889999999999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 515 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++.|..|-|=++++|..+....+.++...++|+|...+||.+++|
T Consensus 248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999888899999999999999999988865
No 43
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1e-32 Score=245.13 Aligned_cols=279 Identities=22% Similarity=0.313 Sum_probs=245.1
Q ss_pred eeeccCCCCeEEEEEcC---CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSS---DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~---dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
....+|+.+|..++||| +|-+|++++.|+.-.+-+-++|..+-++.+|.+.|+...++.+...-++++.|-+.+|||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~ 87 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD 87 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence 35679999999999986 899999999999999999999999999999999999999999988999999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeCCeeEEEEecCCCEEEEEECC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
.-+ +..+..+. |..-|..++|+.|.++|+ +|+.+..++|||++..+. +.-..+.+..+.|......+++++.|
T Consensus 88 a~t-gdelhsf~-hkhivk~~af~~ds~~ll-tgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 88 AVT-GDELHSFE-HKHIVKAVAFSQDSNYLL-TGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred hhh-hhhhhhhh-hhheeeeEEecccchhhh-ccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 998 66666665 889999999999987666 999999999999987653 23345567788899988999999999
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
++|++||.+++..+..+. ...+|+++.++++|.+|.++....|++||..+. ..+..+. -...|.+..++|+...+
T Consensus 165 ~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k-~P~nV~SASL~P~k~~f 239 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYK-MPCNVESASLHPKKEFF 239 (334)
T ss_pred CceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeecc-CccccccccccCCCceE
Confidence 999999999999998887 467899999999999988877779999999765 3444433 24557888999999999
Q ss_pred EEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 514 LVIGCYQSLELWNMSENKTMTL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+.|..++.||+.+++.+.. .+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus 240 VaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 240 VAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred EecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999999999999999988833 79999999999999999999999999999994
No 44
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=249.47 Aligned_cols=283 Identities=19% Similarity=0.273 Sum_probs=244.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.+..|..|+..|.+++.+|+.+++|||+.|..-.||++.++.....+.+|++.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ +.....+......|.-+.|+|.+ .+++.|+.||.|.+|.+.++...+.+.++. ++=.|.|+|++++++..||+
T Consensus 136 st-g~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt 213 (399)
T KOG0296|consen 136 ST-GGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT 213 (399)
T ss_pred cc-CceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence 98 44455555567788999999975 566699999999999999988888888754 45569999999999999999
Q ss_pred EEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee--------cCCCc---eE
Q 008393 436 VSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS--------CNGNK---FH 502 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~--------~~~~~---i~ 502 (567)
|++||+.++.++..+... .....++.++..+..++.|+.+ .+++-+..++ +.+.... .+... |.
T Consensus 214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence 999999999999888743 3457788899999999999988 8888877766 3333332 22333 44
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.++..-+..++|+-||+|.|||+...+......|...|..+.|-+ ..+|++++.||.|++||
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD 354 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence 45566667788999999999999999999888899999999999988 78999999999999997
No 45
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.4e-31 Score=275.36 Aligned_cols=258 Identities=29% Similarity=0.448 Sum_probs=224.7
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeecccCccEEEEEECCCCCe
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLEEHSSLITDVRFSPSMPR 343 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~~h~~~V~~i~fsp~~~~ 343 (567)
.+++|....... .+...+.+|...|.+++|+||++++++++.|++|+|||+ ..+..++++++|...|++++|+|++++
T Consensus 182 ~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~ 260 (456)
T KOG0266|consen 182 LIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNL 260 (456)
T ss_pred cEEEeecccccc-hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCE
Confidence 344555433322 355667899999999999999999999999999999999 667999999999999999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeEEEeC-----Cee
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTRVFKG-----GTA 416 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~~~~~-----~~~ 416 (567)
|++|+.|++|+|||+.+ +.++..+.+|...|.+++|.+++..++ +++.|+.|++||+.++. +...+.. .+.
T Consensus 261 i~Sgs~D~tvriWd~~~-~~~~~~l~~hs~~is~~~f~~d~~~l~-s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 261 LVSGSDDGTVRIWDVRT-GECVRKLKGHSDGISGLAFSPDGNLLV-SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred EEEecCCCcEEEEeccC-CeEEEeeeccCCceEEEEECCCCCEEE-EcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 99999999999999998 889999999999999999999987555 77889999999999999 4455432 357
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe---eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI---DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V---~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+.|+|++.++++++.|+.+++||+..+.+...+.+|...+ .+..+++.+.++++++.| .|++||+.++ ..+.
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~ 415 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQ 415 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc---chhh
Confidence 78999999999999999999999999999999999988753 344557799999999999 9999999875 5667
Q ss_pred EeecC-CCceEEEEEeCCCCeEEEEE--cCCeEEEEECC
Q 008393 493 ELSCN-GNKFHSCVFHPTYPSLLVIG--CYQSLELWNMS 528 (567)
Q Consensus 493 ~~~~~-~~~i~~~~~sp~~~~l~~~~--~dg~I~iwd~~ 528 (567)
.+.+| ...+..+.+++..+++++++ .|+.|++|...
T Consensus 416 ~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 77778 88899999999999999998 67899999764
No 46
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-31 Score=249.57 Aligned_cols=242 Identities=22% Similarity=0.443 Sum_probs=221.5
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.+..+.+.+|.++|.|+++.|.+.+|++|+.|++|+|||+.+ +....++.+|...|..+++++...++| +++.|+.|+
T Consensus 141 wKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlat-g~LkltltGhi~~vr~vavS~rHpYlF-s~gedk~VK 218 (460)
T KOG0285|consen 141 WKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLAT-GQLKLTLTGHIETVRGVAVSKRHPYLF-SAGEDKQVK 218 (460)
T ss_pred ceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEccc-CeEEEeecchhheeeeeeecccCceEE-EecCCCeeE
Confidence 456677889999999999999999999999999999999998 888899999999999999999877665 999999999
Q ss_pred EEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 399 YWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 399 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.||++..+.++.+.++ +.++..+|....+++++.|..+++||+++...+..+.+|..+|..+.+.|....+++|+.|
T Consensus 219 CwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D 298 (460)
T KOG0285|consen 219 CWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD 298 (460)
T ss_pred EEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence 9999999999998875 5778899999999999999999999999999999999999999999999988889999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCE
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGY 553 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~ 553 (567)
+|++||++.+ +....+..|...+.+++.+|....+++++.| .|+-|++..+..+ .+.+|..-|++++...|+ +
T Consensus 299 ~tvrlWDl~ag---kt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v 373 (460)
T KOG0285|consen 299 STVRLWDLRAG---KTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-V 373 (460)
T ss_pred ceEEEeeeccC---ceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeeccCc-e
Confidence 9999999887 6778888899999999999998877776665 6999999999877 788999999999997776 7
Q ss_pred EEEEECCCcEEEcC
Q 008393 554 VASASHDKFVKLWK 567 (567)
Q Consensus 554 l~s~s~Dg~I~iWd 567 (567)
+++|++.|.|.+||
T Consensus 374 ~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 374 LVSGGDNGSIMFWD 387 (460)
T ss_pred EEEcCCceEEEEEe
Confidence 88999999999997
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=3e-32 Score=258.10 Aligned_cols=284 Identities=21% Similarity=0.309 Sum_probs=244.5
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.+|.+..+.|+++.|.++++++++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 3456788999999999999999999999999999999997666 77888899999999999999999999999999999
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCe
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
|+++. .....++.+|.+.|+++.|...... +++|+.|.+|++||+....|.+++-....+..+......++.+..|+.
T Consensus 246 Wnvd~-~r~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~Dkk 323 (459)
T KOG0288|consen 246 WNVDS-LRLRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKK 323 (459)
T ss_pred eeccc-hhhhhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEecceeeeecccccc
Confidence 99997 7788999999999999999876544 669999999999999999998887655444333333566777888999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC----CCceEEEEEeCCC
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----GNKFHSCVFHPTY 510 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~----~~~i~~~~~sp~~ 510 (567)
|++||.++..+......+. .|+++..+++|..|.+++.| ++.++|+++. .....+... ...++.++|+|++
T Consensus 324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~ 399 (459)
T KOG0288|consen 324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG 399 (459)
T ss_pred eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence 9999999999999988775 99999999999999999988 9999999886 333333322 2337889999999
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEE-ecc-ccC-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMT-LTA-HEG-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~-~~~-h~~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+++|+.||.|+||++.++++.. +.. +.. .|++++|+|.|.+|++++.++.+.+|.
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 999999999999999999998873 332 322 699999999999999999999999994
No 48
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-30 Score=235.15 Aligned_cols=283 Identities=20% Similarity=0.309 Sum_probs=239.2
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC--CCcEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF--DKTVR 354 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~--dg~I~ 354 (567)
|+..+.++.-.+.|.++.|+.+|.+|++++.|..|+|||..+++.+.++..+...|..++|......++.++. |.+|+
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4556667777899999999999999999999999999999999999999999999999999887777777776 88999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-CeeEEEEecCCCEEEEEECC
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d 433 (567)
..++.+ .+.++.+.||...|.+|+.+|-++. +++++.|++|++||++..+|...+.. +....+|.|.|-.++++...
T Consensus 84 yLsl~d-NkylRYF~GH~~~V~sL~~sP~~d~-FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 84 YLSLHD-NKYLRYFPGHKKRVNSLSVSPKDDT-FLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGS 161 (311)
T ss_pred EEEeec-CceEEEcCCCCceEEEEEecCCCCe-EEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCC
Confidence 999998 7889999999999999999999864 55999999999999999988877765 45667899998777777777
Q ss_pred CeEEEEECCCC--eEEEEec---CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc---eEEE
Q 008393 434 NVVSILDAETQ--ACRLSLQ---GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK---FHSC 504 (567)
Q Consensus 434 g~I~i~d~~~~--~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~---i~~~ 504 (567)
+.|++||++.- .+..++. +.....+.|.|+|||++|+.++.. .+++.|.-+|. .+..+..+... -..+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~---~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT---VKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc---EeeeEeeccCCCCcceeE
Confidence 79999999874 3333333 346788999999999999998888 89999998774 55555544333 3677
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc-ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|.||++++++|+.||+|.+|+++++..+ .+.+ +.+++.++.|+|.-.++++++. .+.+|
T Consensus 239 ~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw 300 (311)
T KOG1446|consen 239 TFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFW 300 (311)
T ss_pred EECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEE
Confidence 89999999999999999999999999888 5555 7899999999998877777654 57777
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-31 Score=270.52 Aligned_cols=280 Identities=22% Similarity=0.388 Sum_probs=248.3
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
|...+..|..++|+|.--+++++-..|.|.+||..-+.++..+.+|.++|+.|+|+|...++++|++|-.|+||+..+ .
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~-r 83 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-R 83 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc-c
Confidence 445577888999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
.++.++.+|-..|..+.|++.-..++ +++.|.+|+||+..+++++..++++. .|..|+|....+++++-|-+|++|
T Consensus 84 rclftL~GHlDYVRt~~FHheyPWIl-SASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW 162 (1202)
T KOG0292|consen 84 RCLFTLLGHLDYVRTVFFHHEYPWIL-SASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW 162 (1202)
T ss_pred eehhhhccccceeEEeeccCCCceEE-EccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence 88999999999999999999977555 99999999999999999999999864 566799999999999999999999
Q ss_pred ECCCC-----------------------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 440 DAETQ-----------------------------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 440 d~~~~-----------------------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
|+... -..+.+.||...|+-++|+|.-.+|++|++| .|++|.+... ..-
T Consensus 163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet-KaW 241 (1202)
T KOG0292|consen 163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KAW 241 (1202)
T ss_pred eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc-cce
Confidence 97521 1234678999999999999999999999999 9999999753 334
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ ++.-..+..+.++.+|..++++.| +|+-+.+|
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VF 318 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVF 318 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEE
Confidence 56778899999999999999999999999999999999988877 566666788999999999887755 55555554
No 50
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=5.4e-31 Score=240.78 Aligned_cols=284 Identities=22% Similarity=0.393 Sum_probs=239.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------------CeeeeeecccCccEEEEEECCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------------------~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
+...+..|.+++.+.+|++||.++|+|+.|..|+|+|++. --.++++..|.+.|+++.|+|.
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch
Confidence 4567889999999999999999999999999999999861 1356788899999999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------Ee
Q 008393 341 MPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FK 412 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~ 412 (567)
...|++|+.|++|++||+..... ..+.+ ....+|.+|.|+|.|+.++ .|.....+++||+++..|... .+
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefll-vgTdHp~~rlYdv~T~QcfvsanPd~qht 261 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLL-VGTDHPTLRLYDVNTYQCFVSANPDDQHT 261 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEE-EecCCCceeEEeccceeEeeecCcccccc
Confidence 99999999999999999975321 11222 2457899999999988665 888889999999999887644 45
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC-CC-CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 413 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG-HT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~-~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
+.++++.+++.+..+++++.||.|++||--.++|+.++.. |. ..|.+..|..+|+||++.+.| .|++|.+.++ .
T Consensus 262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R 338 (430)
T KOG0640|consen 262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R 338 (430)
T ss_pred cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence 6789999999999999999999999999999999988864 54 479999999999999999999 9999999887 6
Q ss_pred eEEEeecCCCc-----eEEEEEeCCCCeEEEEEcC-CeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 490 CVHELSCNGNK-----FHSCVFHPTYPSLLVIGCY-QSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 490 ~i~~~~~~~~~-----i~~~~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
++.++.+.+.. -+...|+....|++.-... +.+.-||.++...+ .-.+|.+.+..+.-+|.+.-+++|+.|.
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~ 418 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF 418 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence 77776654221 2344677777777776554 58999999998776 3458999999999999999999999999
Q ss_pred cEEEcC
Q 008393 562 FVKLWK 567 (567)
Q Consensus 562 ~I~iWd 567 (567)
.+|+|.
T Consensus 419 raRFWy 424 (430)
T KOG0640|consen 419 RARFWY 424 (430)
T ss_pred eeeeee
Confidence 999993
No 51
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.5e-30 Score=264.86 Aligned_cols=243 Identities=25% Similarity=0.443 Sum_probs=210.4
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
+..|..|.++|..++|+|.+.++++||.|.+|+||+.++.+++.++.+|-+.|+.+.|++.-.+|+++++|.+|+||+..
T Consensus 44 i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 44 IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 34456799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-----------------------------eEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-----------------------------TRV 410 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-----------------------------~~~ 410 (567)
+ ..++..++||...|.|..|+|.. .+|++++-|.+|+|||+..-+. ...
T Consensus 124 s-r~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V 201 (1202)
T KOG0292|consen 124 S-RKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV 201 (1202)
T ss_pred C-CceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence 8 88999999999999999999974 4788999999999999863211 112
Q ss_pred EeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 411 FKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 411 ~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
+.+ +++.++|+|.-..+++|+.|..|++|....-+ .+-+..+|.+.|.++-|+|.-+++++.++| .|+|||+..
T Consensus 202 LEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 202 LEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred ecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEeccc
Confidence 233 46778899999999999999999999986543 345678999999999999999999999999 999999965
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
. ..+.++......++.++.+|..+. ++++.|+.+.+|.++
T Consensus 282 R---t~v~tfrrendRFW~laahP~lNL-fAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 282 R---TSVQTFRRENDRFWILAAHPELNL-FAAGHDSGMIVFKLE 321 (1202)
T ss_pred c---cceeeeeccCCeEEEEEecCCcce-eeeecCCceEEEEEc
Confidence 5 778888888899999999999984 445555555566554
No 52
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.98 E-value=1.3e-30 Score=253.01 Aligned_cols=291 Identities=16% Similarity=0.215 Sum_probs=234.7
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe----eeeee-cccCccEEEEEECCCCCeEEEEeC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK----SKTNL-EEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~----~~~~l-~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
.+......+++|+..|.++++.|.|-.|++|+.|..|++||+.... ..+.| ......|+++.|++.+..|++.+.
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg 234 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG 234 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec
Confidence 3445566789999999999999999999999999999999997432 22222 245567999999999999999988
Q ss_pred CCcEEEEEcCCCCcee------------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe----
Q 008393 350 DKTVRVWDADNPGYSL------------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---- 412 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~------------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---- 412 (567)
...++|+|-+. ...+ ...+||...++|.+|+|..+..|++|+.||+++|||+...+ .+.+++
T Consensus 235 ~aqakl~DRdG-~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~ 313 (641)
T KOG0772|consen 235 SAQAKLLDRDG-FEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPA 313 (641)
T ss_pred CcceeEEccCC-ceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccC
Confidence 88999999874 2222 23358999999999999999999999999999999998754 334443
Q ss_pred ----CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE---EEEecCCCC--CeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 413 ----GGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTK--PIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 413 ----~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..++.++|++++..+++++.||.|.+|+...... ...-..|.. .|+||.|++||++|++-+.| ++++||+
T Consensus 314 ~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 314 GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeec
Confidence 2467788999999999999999999999865422 233356776 89999999999999999999 9999999
Q ss_pred CCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc------CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEE
Q 008393 483 GSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~ 555 (567)
+..+....+.+-.....+-+.|+|+|+.+.|++|.. .|.+++||..+...+ .+......|..+.|+|.-+.|+
T Consensus 394 rq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 394 RQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF 473 (641)
T ss_pred cccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence 976543333333334455688999999999999864 368999999988776 5666677899999999988899
Q ss_pred EEECCCcEEEc
Q 008393 556 SASHDKFVKLW 566 (567)
Q Consensus 556 s~s~Dg~I~iW 566 (567)
.|+.||.++||
T Consensus 474 ~gsgdG~~~vy 484 (641)
T KOG0772|consen 474 AGSGDGTAHVY 484 (641)
T ss_pred eecCCCceEEE
Confidence 99999999986
No 53
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.3e-31 Score=248.10 Aligned_cols=273 Identities=21% Similarity=0.401 Sum_probs=230.5
Q ss_pred CCceEEeeccCC---CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee
Q 008393 247 DDNVESFLSHDD---TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 323 (567)
Q Consensus 247 ~~~v~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~ 323 (567)
.+.|-++--.|+ .+.+|.++++||..+. .+.+.+.||++.|.|+.|.. +.+++|+.|.+|+|||+++++++.
T Consensus 197 skgVYClQYDD~kiVSGlrDnTikiWD~n~~---~c~~~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 197 SKGVYCLQYDDEKIVSGLRDNTIKIWDKNSL---ECLKILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred CCceEEEEecchhhhcccccCceEEeccccH---HHHHhhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh
Confidence 344555544444 5778899999987554 67888999999999999975 499999999999999999999999
Q ss_pred eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
++-+|.+.|..+.|+. .++++++.|.+|.+||+..+.. +.+.+.||...|..+.|+. .+|++++.|.+|++|+
T Consensus 272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~ 346 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWS 346 (499)
T ss_pred HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEe
Confidence 9999999999999974 4999999999999999987542 3456779999999999973 3788999999999999
Q ss_pred CCCCeeeEEEeCCeeEEEEec-CCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE
Q 008393 402 INNGSCTRVFKGGTAQMRFQP-HLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV 479 (567)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i 479 (567)
+.++++++++.++...++... .+..++.|+.|++|++||+..|.++..+.+|+.-|.||.|. .+.+++|+.| +|+|
T Consensus 347 ~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 347 TSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKV 424 (499)
T ss_pred ccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEE
Confidence 999999999998877766544 44556667779999999999999999999999999999996 5679999999 9999
Q ss_pred EeCCCCCCC------ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 480 WTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 480 wd~~~~~~~------~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
||+..+..+ .|+..+..|.+.|..+.|. ...|++++.|.+|.|||+..+..-
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence 999876443 3666777788888888885 456999999999999999876544
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=7.6e-30 Score=232.82 Aligned_cols=272 Identities=22% Similarity=0.361 Sum_probs=232.4
Q ss_pred cCeEEEecCCCccccCCCc---eeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeee
Q 008393 205 KPLMMFGTDGAGTLTSPSN---QLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEAN 281 (567)
Q Consensus 205 ~~~~~~~~dg~~~~~~~~~---~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 281 (567)
.-.++|.|+|..+++++.. -||++... .+...
T Consensus 50 I~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd---------------------------------------------ceN~~ 84 (338)
T KOG0265|consen 50 IYTIKFHPDGSCFASGGSDRAIVLWNVYGD---------------------------------------------CENFW 84 (338)
T ss_pred EEEEEECCCCCeEeecCCcceEEEEecccc---------------------------------------------cccee
Confidence 3467999999988887765 45654321 12345
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCC
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADN 360 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~ 360 (567)
.+++|.++|..+.|.+|++.|++++.|++|+.||+++|+.++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 6779999999999999999999999999999999999999999999999999998555454 677889999999999997
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+..++++. ....++++.|...+...+ +|+-|+.|++||++......++.++ ++.+..++++..++.-+.|++++
T Consensus 165 -k~~~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 165 -KEAIKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred -cchhhccc-cceeEEEEEeccccccee-eccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEE
Confidence 55666554 467799999998888777 9999999999999999999998874 67888999999999999999999
Q ss_pred EEECCCC----eEEEEecCCC----CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 438 ILDAETQ----ACRLSLQGHT----KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 438 i~d~~~~----~~~~~~~~h~----~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
+||++-. +++..+.+|. .....++|+|++..+.+|+.| .+++||.... ..+..+.+|...|.++.|+|
T Consensus 242 vwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp 318 (338)
T KOG0265|consen 242 VWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHP 318 (338)
T ss_pred EEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecC
Confidence 9999863 5677777753 345678999999999999999 9999999654 78999999999999999999
Q ss_pred CCCeEEEEEcCCeEEEEEC
Q 008393 509 TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~ 527 (567)
....|++++.|.+|++=.+
T Consensus 319 ~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 319 TEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred CCcEEEEeccCceeEeecc
Confidence 9999999999999987543
No 55
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=227.54 Aligned_cols=263 Identities=22% Similarity=0.368 Sum_probs=219.1
Q ss_pred CCCCCCCccceeccCCccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDV 335 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i 335 (567)
..+.|..+|+|+...+-++.+...+. +|+..|..++|+|.|++||+|+.|.++.||.-. +++++.+|++|...|.|+
T Consensus 32 scg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~V 111 (312)
T KOG0645|consen 32 SCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCV 111 (312)
T ss_pred eecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEE
Confidence 34567789999988776777776664 899999999999999999999999999999865 568899999999999999
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCC--CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-C--CeeeEE
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-N--GSCTRV 410 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~--~~~~~~ 410 (567)
+|+++|.+||+++.|+.|-||.++. .-.++..+..|...|..+.|+|.. .|+++++.|++|++|+-. . -.++..
T Consensus 112 aws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~dddW~c~~t 190 (312)
T KOG0645|consen 112 AWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDEDDDDWECVQT 190 (312)
T ss_pred EEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecCCCCeeEEEE
Confidence 9999999999999999999999984 335678899999999999999984 477799999999999877 2 356777
Q ss_pred EeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 411 FKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 411 ~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
+.++ +-++.|++.|.++++++.|++|+||-..+.- -..|...+..+.|. ...|++++.| .|++|.-....
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEeeeec--ccceEeccCCCEEEEEEecCCC
Confidence 7664 5678899999999999999999999866321 12277899999998 4578888888 99999876431
Q ss_pred CC---ce-EEEeecCCCceEEEEEeCC-CCeEEEEEcCCeEEEEECC
Q 008393 487 EG---EC-VHELSCNGNKFHSCVFHPT-YPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 487 ~~---~~-i~~~~~~~~~i~~~~~sp~-~~~l~~~~~dg~I~iwd~~ 528 (567)
.. .. ...-..|+..|+++.|.|. .+.|++++.||.|++|.+.
T Consensus 265 d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 265 DEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 11 11 2234567889999999994 6789999999999999874
No 56
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-29 Score=238.01 Aligned_cols=276 Identities=21% Similarity=0.359 Sum_probs=232.9
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC---CeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM---PRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~---~~l~s~s~dg~I~iwd~~~~ 361 (567)
.|.+.|.++... ++++++|++||.+++||. .|+...++.+|.++|.+++|.-.. ..|++++.|.++++|.++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 578888888887 779999999999999997 589999999999999998885433 36999999999999999864
Q ss_pred Cce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-------------------------eeeEEEeC
Q 008393 362 GYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-------------------------SCTRVFKG 413 (567)
Q Consensus 362 ~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-------------------------~~~~~~~~ 413 (567)
... +....||...|.++...+++.. +++|+.|..|+||+..+. ..+..+.+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr-~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTR-FCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCe-EEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 332 2334599999999999999775 559999999999993221 11122233
Q ss_pred ---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 414 ---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
.+..+.|.+ ...++.++.|.+|+.||++++..+.++.+ ...++++.+++..++|++|+.| .|++||.+++....
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 456677887 68899999999999999999999888875 4678999999999999999999 99999999987777
Q ss_pred eEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCc--EEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 490 CVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
....+.+|.+.|.++.|+|... .|++++.|+++++||++..+ .+.+.+|...|.++.|. ++.+|++||.|.+|+|+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~ 415 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF 415 (423)
T ss_pred eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence 8889999999999999999765 46678889999999999876 45889999999999996 56799999999999997
Q ss_pred C
Q 008393 567 K 567 (567)
Q Consensus 567 d 567 (567)
+
T Consensus 416 ~ 416 (423)
T KOG0313|consen 416 K 416 (423)
T ss_pred c
Confidence 4
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.5e-28 Score=240.72 Aligned_cols=243 Identities=33% Similarity=0.603 Sum_probs=217.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
....+..|...+.++.|++++++|++++.||.|++|++.+++.+..+..|...|.++.|++++.++++++.|+.|++||+
T Consensus 43 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 43 LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 34556788899999999999999999999999999999998889999999999999999999888998888999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+ ......+..|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.. .+..+.|++++..+++++.++.
T Consensus 123 ~~-~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 200 (289)
T cd00200 123 ET-GKCLTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT 200 (289)
T ss_pred CC-cEEEEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc
Confidence 86 666777888999999999999854 665777799999999998887777654 5678899999989999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|.+||+++++.+..+..|...+.+++|++++.++++++.+ .|++||+.++ ..+..+..+...+.+++|++++.+|+
T Consensus 201 i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~ 277 (289)
T cd00200 201 IKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLA 277 (289)
T ss_pred EEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEE
Confidence 9999999999998888899999999999999999988866 9999999765 56667778888999999999999999
Q ss_pred EEEcCCeEEEEE
Q 008393 515 VIGCYQSLELWN 526 (567)
Q Consensus 515 ~~~~dg~I~iwd 526 (567)
+++.|+.|++|+
T Consensus 278 ~~~~d~~i~iw~ 289 (289)
T cd00200 278 SGSADGTIRIWD 289 (289)
T ss_pred EecCCCeEEecC
Confidence 999999999996
No 58
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.2e-31 Score=245.76 Aligned_cols=278 Identities=18% Similarity=0.339 Sum_probs=236.5
Q ss_pred eeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+...++..++..|.+.|..|++.. ..+++++.|.+|+.|.
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK 135 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence 456789999999999999987 7899999999999999999999999999999999999987 6899999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEE-CC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAA-AE 433 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~-~d 433 (567)
++. .+++++.+ ...+..|+-+.. ...++|||. .|-|||......+..+.- .+.++.|+|....+++++ .|
T Consensus 136 ~~~--~p~~tilg-~s~~~gIdh~~~-~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 136 IDG--PPLHTILG-KSVYLGIDHHRK-NSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ccC--Ccceeeec-cccccccccccc-cccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 986 35666654 455677776655 346778865 599999998888888764 457889999887776666 79
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|.+||++...++..+.- ...-+.|||+|.+-.++++++| .++.||++... ..+....+|.+.+.++.|+|.|.-
T Consensus 210 rsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E 286 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE 286 (433)
T ss_pred CceEEEecccCCccceeee-eccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence 9999999999988766542 3445789999988889999999 99999998653 567778889999999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEEEec--cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++|+.|.+|+||....+....+. .-...|.|+.||-|.+||++|++|+.|++|+
T Consensus 287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence 999999999999999988765332 3345699999999999999999999999996
No 59
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.5e-30 Score=227.26 Aligned_cols=275 Identities=21% Similarity=0.380 Sum_probs=229.6
Q ss_pred EEEEEcC-CCCeEEEEe-------CCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcC
Q 008393 291 ICCHFSS-DGKLLATGG-------HDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPS-MPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 291 ~~l~~s~-dg~~lasg~-------~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~ 359 (567)
+++.||| -.++||++. ..|++.|.++...+-+..+. .-.+.+..++|+++ .+.+++++.||+++|||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 4788998 233444432 36889999986554444433 35677999999986 4588999999999999988
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE---EEEecCCC-EEEEEECCCe
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ---MRFQPHLG-RYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~-~l~~~~~dg~ 435 (567)
.+..++..++.|...|.++.|++..++.+++++.|++|++|+...+..+.+|+++..+ ..|+|... .++.++.|+.
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~ 171 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT 171 (311)
T ss_pred CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence 8788999999999999999999988888889999999999999999999999987554 56898764 5566777999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-Ce
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PS 512 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~ 512 (567)
+++||++..-....+..|...|.++.|+. +.++|++|+.| .|++||+++.+ ..+.++.+|+-.|..+.|+|.. ..
T Consensus 172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l 249 (311)
T KOG0277|consen 172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL 249 (311)
T ss_pred EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence 99999988655555889999999999998 67799999999 99999998754 5688899999999999999976 46
Q ss_pred EEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEec-CCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iWd 567 (567)
|++++.|-+++|||...+... +...|...|..+.|++ +..++|+++.|+.++||+
T Consensus 250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 777888899999999865543 6678999999999987 567999999999999996
No 60
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=222.76 Aligned_cols=254 Identities=23% Similarity=0.332 Sum_probs=221.0
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.|.++|+|+..+| ..++++.+|...|..++.+.|...|++|+.|..|.+||+++|+..+.+.+|.+.|+.++|+.+.
T Consensus 37 sdrtvrLWNp~rg---~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees 113 (307)
T KOG0316|consen 37 SDRTVRLWNPLRG---ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES 113 (307)
T ss_pred CCceEEeeccccc---ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc
Confidence 3445666666666 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCC-CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEE
Q 008393 342 PRLATSSFDKTVRVWDADNP-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR 419 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~ 419 (567)
..+++|+.|.++++||.++. .+++..+......|.++... ++.|++|+.||+++.||++.|.....+ ..++++++
T Consensus 114 SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs 190 (307)
T KOG0316|consen 114 SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVS 190 (307)
T ss_pred eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCCcceeEE
Confidence 99999999999999999863 35778888888999999997 456779999999999999999877654 45789999
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe--eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI--DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V--~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
|+++++..++++.++++++.|-.+++.+..+++|...- ...++......+++|++| .|++||+... ..+..+..
T Consensus 191 ~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~ 267 (307)
T KOG0316|consen 191 FSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSV 267 (307)
T ss_pred ecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeecc
Confidence 99999999999999999999999999999999997653 345677788899999999 9999999765 67777777
Q ss_pred CCCc-eEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 497 NGNK-FHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 497 ~~~~-i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
+... +..+.++|.-..++++...+ +.+|
T Consensus 268 ~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~ 296 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPTMDDFITATGHG-DLFW 296 (307)
T ss_pred CCceeEEeeecccCccceeEecCCc-eece
Confidence 7766 89999999888888776654 3444
No 61
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.4e-31 Score=253.86 Aligned_cols=246 Identities=18% Similarity=0.312 Sum_probs=217.7
Q ss_pred CeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 319 LKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
.+.+.++.+|+..|+++.|.| .+.+|++++.|+.|+||++...+.+++++.+|..+|.+++|+.+|..++ +++.|+.|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fL-S~sfD~~l 282 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFL-SASFDRFL 282 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeee-eeecceee
Confidence 456788999999999999999 8889999999999999999988999999999999999999999998777 99999999
Q ss_pred EEEECCCCeeeEEEeC--CeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 398 RYWSINNGSCTRVFKG--GTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~~--~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
++||+++|+++..|.. ...++.|+|++ +.+++|+.|+.|..||+++++.+..+..|-+.|..|.|-++|+.+++.++
T Consensus 283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence 9999999999998875 46889999999 78889999999999999999999999999999999999999999999999
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----Eecccc--CCeeEEEE
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHE--GLIAALAV 547 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~--~~V~~l~~ 547 (567)
| .++||+.+..-..+.+.. .......+|..+|+++++++-+.|+.|.+|.+...-.. .+.+|. +.-..+.|
T Consensus 363 dks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~f 440 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDF 440 (503)
T ss_pred CccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEE
Confidence 9 999999987643333333 23445678899999999999999999999997654333 566775 45667899
Q ss_pred ecCCCEEEEEECCCcEEEcC
Q 008393 548 STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 548 spdg~~l~s~s~Dg~I~iWd 567 (567)
||||++|++|+.||.+.+||
T Consensus 441 SpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 441 SPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred cCCCCeEEeecCCccEEEee
Confidence 99999999999999999997
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.97 E-value=5.6e-29 Score=237.15 Aligned_cols=275 Identities=24% Similarity=0.395 Sum_probs=243.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|.++...+....+++|+.|..+.++|...++.+.++++|...|+.+.|+++...+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 35688888888878999999999999999999999999999999999999999999999999999999999987 44566
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
....|..+|+.+..+|.|++++ +++.|+++.+.|++++.++...... .++..|+|||-.|.++..|+.|+|||+
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYll-sAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl 376 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLL-SASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL 376 (506)
T ss_pred ccccccccceeeeeccCCcEEE-EecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence 7788999999999999998777 8899999999999999988776553 678899999999999999999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d 519 (567)
..+..+..|.+|+++|..|+|+.+|.||+++++| .|++||++..+. +.++... ...+.++.|...|.+|+.++.+
T Consensus 377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n---~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN---FKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcc---cceeeccccccceeEEEcCCCCeEEeecce
Confidence 9999999999999999999999999999999999 799999987643 3333322 2368999999999999999888
Q ss_pred CeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 520 QSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 520 g~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
=.|++++-.+.... .+..|.+..+++.|.....++++++.|..++|+
T Consensus 454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 78888876555433 566788899999999999999999999999886
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-29 Score=240.11 Aligned_cols=259 Identities=20% Similarity=0.273 Sum_probs=219.4
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCe
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPR 343 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~ 343 (567)
+..+|.+.....++..+++.+|..+|..+.||||.++|++++.|..+.+||+.+|.....+. +|...+.+++|.|||..
T Consensus 247 Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~ 326 (519)
T KOG0293|consen 247 TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR 326 (519)
T ss_pred eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCce
Confidence 34455555555578899999999999999999999999999999999999999999888776 45788999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRF 420 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~ 420 (567)
+++|+.|+.|..||++. ..+....+- ...|.+++..+||++++ +.+.|..|++++.++......+ ..+++.+++
T Consensus 327 ~V~Gs~dr~i~~wdlDg--n~~~~W~gvr~~~v~dlait~Dgk~vl-~v~~d~~i~l~~~e~~~dr~lise~~~its~~i 403 (519)
T KOG0293|consen 327 FVTGSPDRTIIMWDLDG--NILGNWEGVRDPKVHDLAITYDGKYVL-LVTVDKKIRLYNREARVDRGLISEEQPITSFSI 403 (519)
T ss_pred eEecCCCCcEEEecCCc--chhhcccccccceeEEEEEcCCCcEEE-EEecccceeeechhhhhhhccccccCceeEEEE
Confidence 99999999999999985 333444433 25699999999999888 4557999999999987766443 457889999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC--eeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP--IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~--V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.++..+++.-.+..|.+||++..+.+.++.||+.. |..-||-- +..++++|++| .|+||+..++ +.+.++.+
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg---kll~~LsG 480 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG---KLLAVLSG 480 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC---ceeEeecC
Confidence 999999999999999999999999999999998754 44456654 55899999999 9999999877 88999999
Q ss_pred CCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCC
Q 008393 497 NGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 529 (567)
|...+.+++|+|... .+++++.||+|+||....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 999999999999765 577788899999998764
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=258.36 Aligned_cols=242 Identities=23% Similarity=0.346 Sum_probs=200.8
Q ss_pred eeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------------------------
Q 008393 281 NSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------------------------------------- 318 (567)
Q Consensus 281 ~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----------------------------------------- 318 (567)
..+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4556 8999999999999999999999999999997643
Q ss_pred -------------------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEE
Q 008393 319 -------------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 319 -------------------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 379 (567)
.+++..+.+|.+.|.+|.|+.++ +|++++.|.+|++|++.. ..++..|. |...|+|++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~-~~CL~~F~-HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGR-KECLKVFS-HNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCC-cceeeEEe-cCCeeEEEE
Confidence 01223456799999999999765 999999999999999997 78888887 999999999
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC--C--
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-- 453 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-- 453 (567)
|+|..+++|++|+-||.|+||++...+.+.. ++.-++.++|.|+|...++|+.+|.+++|+....+....+.- |
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~ 496 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK 496 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC
Confidence 9999999999999999999999999887755 346789999999999999999999999999998876654421 1
Q ss_pred ----CCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCC--ceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 454 ----TKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 454 ----~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
...|+.+.|.|.. ..|++.+.| .|+|||.+.. ..+..+++... .-....|+.||++|++++.|..|+||
T Consensus 497 Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW 573 (712)
T KOG0283|consen 497 KKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIW 573 (712)
T ss_pred ccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEE
Confidence 2379999999743 346666777 9999999655 45555554332 23456899999999999999999999
Q ss_pred ECC
Q 008393 526 NMS 528 (567)
Q Consensus 526 d~~ 528 (567)
++.
T Consensus 574 ~~~ 576 (712)
T KOG0283|consen 574 KND 576 (712)
T ss_pred eCC
Confidence 973
No 65
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.9e-29 Score=239.20 Aligned_cols=276 Identities=19% Similarity=0.289 Sum_probs=239.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-.+.|.+++|+|...+=++....-.+.||+..+...+.++......|.++.|..||++|+.|...|.|+|||+.+ ...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 356899999999654333333357899999999888888888899999999999999999999999999999655 6678
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-EEEEEECCCeEEEEEC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAENVVSILDA 441 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~dg~I~i~d~ 441 (567)
+.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.+ .+.+..|+|..+ .+++|+.||.|++||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 899999999999999999999999999999999999999987555555 456777888766 5677888999999999
Q ss_pred CCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 442 ETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 442 ~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+.. ..+..+. |..+|..+.+-|.|.+|++++...|+|||+.+|. +.+..+..|...|+|+++..++..|++++-|+
T Consensus 184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~ 260 (487)
T KOG0310|consen 184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR 260 (487)
T ss_pred ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence 988 5555655 9999999999999999999999999999998663 45555566889999999999999999999999
Q ss_pred eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 521 SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.|++||+.+.+.+.-....++|-+++.+|++..++.|..||.+.+
T Consensus 261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence 999999888888876778899999999999999999999998754
No 66
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.5e-27 Score=249.66 Aligned_cols=248 Identities=15% Similarity=0.184 Sum_probs=200.1
Q ss_pred EeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCc-------eeEEeccCCCcEE
Q 008393 305 GGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGY-------SLRTFMGHSASVM 376 (567)
Q Consensus 305 g~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 376 (567)
|+.++.|++|+......+..+.+|...|.+++|+|+ +.+|++|+.||+|+|||+.+... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567889999999888888999999999999999997 78999999999999999976332 3446788999999
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
+++|+|++..++++++.|+.|++||+++++.+..+. ..+.++.|++++..+++++.|+.|+|||+++++.+..+.+|.
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 999999988888899999999999999988766553 457889999999999999999999999999999999999998
Q ss_pred CCeeEE-----EEcCCCCEEEEEeCC-----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 455 KPIDSV-----CWDPSGELLASVSED-----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 455 ~~V~~l-----~~sp~g~~l~s~s~d-----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
+.+.+. .|++++.+|++++.+ .|+|||++..........+......+......+++.++++|+.|+.|++
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~ 289 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY 289 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence 765433 345888888887755 4999999864332333333333344444444556888899999999999
Q ss_pred EECCCCcEEEe--ccccCCeeEEEEecCCC
Q 008393 525 WNMSENKTMTL--TAHEGLIAALAVSTETG 552 (567)
Q Consensus 525 wd~~~~~~~~~--~~h~~~V~~l~~spdg~ 552 (567)
|++..+....+ ..+..++.+++|.|+..
T Consensus 290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEccCCcEEeecccccCCCccceEEccccc
Confidence 99988765433 34667889999999653
No 67
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.97 E-value=1.8e-28 Score=255.71 Aligned_cols=268 Identities=27% Similarity=0.472 Sum_probs=236.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee-ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN-LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~-l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.|...|.|..|. ..++++++.|.+|.+||..++..+.. +.+|.+.|++++|...+.+|++|+.|.++++||+.+ +.
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-g~ 282 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-GE 282 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-Cc
Confidence 367788888888 55899999999999999999999988 999999999999998788999999999999999887 89
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
+...+.+|...|.++...+ .++++|+.|.+|++|++.++.++..+.++. .++.+. ++.+++++.|+.|.+||
T Consensus 283 C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 283 CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred EEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 9999999999999999874 367688999999999999999999988543 444444 89999999999999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
+.++++++.+.+|...|.++.+... .++++|+.| +|++||+++.. +|+..+.+|...+..+. ..+++|++++.|
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~--~~~~~Lvs~~aD 432 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLL--LRDNFLVSSSAD 432 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCcccccccc--cccceeEecccc
Confidence 9999999999999999999988765 899999999 99999998654 78999999988885444 456789999999
Q ss_pred CeEEEEECCCCcEE-Eecc-ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM-TLTA-HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~-~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|++||..+++++ .+.+ |.+.|.++++. ...+++++.||.+++||
T Consensus 433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence 99999999999988 5555 56889988876 46788999999999996
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=7.1e-30 Score=234.60 Aligned_cols=275 Identities=24% Similarity=0.415 Sum_probs=235.5
Q ss_pred EEEecCCCccccC---CCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCCCCCCCccceeccCCccceeeeeec
Q 008393 208 MMFGTDGAGTLTS---PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVR 284 (567)
Q Consensus 208 ~~~~~dg~~~~~~---~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~ 284 (567)
..|+|||.+++++ +-+.+|+..+|.++.++.-...+ .|-
T Consensus 219 A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--------------------------------------~fM 260 (508)
T KOG0275|consen 219 ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--------------------------------------NFM 260 (508)
T ss_pred eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--------------------------------------cee
Confidence 4789999988774 33489999999877665533222 234
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
-|..+|.|+.|+.|...||+|+.||.|+||.+.+|.+++.+. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+ ++
T Consensus 261 Mmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-GK 339 (508)
T KOG0275|consen 261 MMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-GK 339 (508)
T ss_pred ecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-ch
Confidence 577899999999999999999999999999999999999998 8999999999999999999999999999999998 88
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecC-CCEEEEEECCCeEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPH-LGRYLAAAAENVVS 437 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~-~~~l~~~~~dg~I~ 437 (567)
+++.+++|...|+...|.++|.+++ +++.||+|++|+.++.+|+.+|+.. +..+...|. -..++++...++|+
T Consensus 340 ~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~ 418 (508)
T KOG0275|consen 340 CLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVY 418 (508)
T ss_pred hHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEE
Confidence 9999999999999999999998776 9999999999999999999998753 344555554 45688888899999
Q ss_pred EEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 438 ILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 438 i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
|.++.. ..+..+.. ..+...+.+++|.|.++++.++| .++.|.+.+| ..-+.+..|+..+..++-+|..+.|
T Consensus 419 imn~qG-QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNll 494 (508)
T KOG0275|consen 419 IMNMQG-QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLL 494 (508)
T ss_pred EEeccc-eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchh
Confidence 999864 44555543 23456678899999999999999 9999999887 6777888899999999999999999
Q ss_pred EEEEcCCeEEEEE
Q 008393 514 LVIGCYQSLELWN 526 (567)
Q Consensus 514 ~~~~~dg~I~iwd 526 (567)
++-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999994
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.2e-28 Score=244.73 Aligned_cols=265 Identities=22% Similarity=0.429 Sum_probs=228.1
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc-C
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-H 371 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-h 371 (567)
+.|+ ..+.||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||..+ .+.++.+.+ |
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-~k~~~~~~~~h 259 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-QKKTRTLRGSH 259 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-ccccccccCCc
Confidence 5677 344677664 56899999999987776666689999999999999999999999999999987 566777777 9
Q ss_pred CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 372 SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
...|.+++|. ..++.+|+.|+.|..+|++..+.... ....+..+.|++++.+++.++.|+.+.|||....++.
T Consensus 260 ~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 260 ASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPK 336 (484)
T ss_pred CceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCcccc
Confidence 9999999998 34677999999999999998765443 3445777889999999999999999999999999999
Q ss_pred EEecCCCCCeeEEEEcC-CCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc--CCe
Q 008393 448 LSLQGHTKPIDSVCWDP-SGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC--YQS 521 (567)
Q Consensus 448 ~~~~~h~~~V~~l~~sp-~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~--dg~ 521 (567)
..+..|...|.+++|+| ...+||+|+ .| .|++||..++ ..+..+. .+..|..+.|++..+-|+++.. ++.
T Consensus 337 ~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 337 FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQ 412 (484)
T ss_pred EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCCc
Confidence 99999999999999999 566888876 56 8999999887 4444433 4778999999999988887654 468
Q ss_pred EEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus 413 i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 413 ITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred EEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 999999987776 7889999999999999999999999999999996
No 70
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=2.9e-27 Score=265.33 Aligned_cols=238 Identities=18% Similarity=0.251 Sum_probs=199.4
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
...|.+++|++ ++.+||+++.||.|+|||+.+++.+..+.+|...|++++|+| ++.+|++|+.||+|++||+.+ +..
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-~~~ 610 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-GVS 610 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-CcE
Confidence 46799999987 478999999999999999999999999999999999999997 788999999999999999987 566
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
+..+..+ ..|.++.|.+....++++|+.||.|++||+++.. .+..+. ..+..+.|. ++..+++++.|+.|++||
T Consensus 611 ~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 611 IGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred EEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEe
Confidence 6666644 6799999976555677799999999999998765 344443 356778886 678899999999999999
Q ss_pred CCC------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce--------E--EEeecCCCceEE
Q 008393 441 AET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC--------V--HELSCNGNKFHS 503 (567)
Q Consensus 441 ~~~------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~--------i--~~~~~~~~~i~~ 503 (567)
++. ...+..+.+|...+.+++|++++.+|++|+.| .|++|+......... + .....+...|.+
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~ 768 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISS 768 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEE
Confidence 974 35778899999999999999999999999999 999999865421100 0 011234556999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
++|++++..|++++.+|.|+||++
T Consensus 769 v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 769 VCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999999996
No 71
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.8e-27 Score=244.83 Aligned_cols=262 Identities=16% Similarity=0.231 Sum_probs=205.4
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----------eee---eeecccCccEEEEEECC-CCCeEEEEeCCCcE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDTL----------KSK---TNLEEHSSLITDVRFSP-SMPRLATSSFDKTV 353 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----------~~~---~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I 353 (567)
..|....+++|+..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+| ++.+|++|+.|++|
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 44555566667666666666666666664433 222 24678999999999999 88899999999999
Q ss_pred EEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCC
Q 008393 354 RVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHL 424 (567)
Q Consensus 354 ~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~ 424 (567)
+|||+.+.+ ..+..+.+|...|.+++|+|++..++++++.|+.|+|||+++++.+..+.+ .+.+++|++++
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG 180 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG 180 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence 999997632 356788999999999999998777888999999999999999988877764 47889999999
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEEe----CC-eEEEEeCCCCCCCceEEEeec-C
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASVS----ED-SVRVWTVGSGSEGECVHELSC-N 497 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~s----~d-~I~iwd~~~~~~~~~i~~~~~-~ 497 (567)
..+++++.|+.|++||+++++.+..+.+|... +..+.|.+++..|++++ .| .|++||+++... .+..... .
T Consensus 181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~--p~~~~~~d~ 258 (493)
T PTZ00421 181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS--PYSTVDLDQ 258 (493)
T ss_pred CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC--ceeEeccCC
Confidence 99999999999999999999999999988765 44678899888777654 35 899999986543 3333322 2
Q ss_pred CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEe--ccccCCeeEEEEecCC
Q 008393 498 GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTL--TAHEGLIAALAVSTET 551 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~~spdg 551 (567)
...+..+.|++++.+|++++ .|+.|++||+.+++.+.. ..+..++..++|.|.-
T Consensus 259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 34456668999999999888 599999999999887632 2455678888888753
No 72
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=3.1e-29 Score=222.98 Aligned_cols=249 Identities=19% Similarity=0.282 Sum_probs=222.9
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
=+.+|.+|.+.|+...++.+....|+++.|-+-+|||.-+|..+..+. |...|.+++|+.|.++|++|+.++.++|||+
T Consensus 51 wigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdl 129 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDL 129 (334)
T ss_pred cEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhc
Confidence 467899999999999999999999999999999999999999998886 8889999999999999999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCeE
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
+.+..+...+.+|.+.|..+.|+.....+| +...|++||+||.++++.+..+ +.+++.+.++++ +.+++.+..+.|
T Consensus 130 n~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~d-G~ilTia~gssV 207 (334)
T KOG0278|consen 130 NRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQD-GRILTIAYGSSV 207 (334)
T ss_pred cCCCCCchhhcCCCCcceeEEEeccCceEE-eeccCCceEEEEeccCcEEEEEecCCCCcceeeccC-CCEEEEecCcee
Confidence 998888899999999999999998766555 7789999999999999998875 467889999998 667777888999
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.+||..+...++.++. ...|.+..++|+...+++|++| .++.||..++.+..+. .++|.++|.|+.|+|+|...++
T Consensus 208 ~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM-PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred EEeccccccceeeccC-ccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeec
Confidence 9999999988887763 4678999999999999999999 9999999998543331 4889999999999999999999
Q ss_pred EEcCCeEEEEECCCCcEE
Q 008393 516 IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~ 533 (567)
|+.||+|+||-+.-++..
T Consensus 285 GSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCCceEEEEEecCCCch
Confidence 999999999998766654
No 73
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=7.6e-28 Score=253.78 Aligned_cols=278 Identities=20% Similarity=0.330 Sum_probs=234.2
Q ss_pred cCCCCeEEEEEcCCCCeEEEEe--CCCcEEEEeCCC------------CeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGG--HDKKAVLWHTDT------------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~--~dg~I~vwd~~~------------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
.+...|.+++.+|||..+|||| .|+.++||+.+. .+.+.+...|.+.|+|+.|++||.+||+|++|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 3455699999999999999999 899999998652 23456677899999999999999999999999
Q ss_pred CcEEEEEcCC------C-----------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 351 KTVRVWDADN------P-----------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 351 g~I~iwd~~~------~-----------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
+.|.||+... . .+.+..+.+|...|..++|+|++. ++++++.|++|.||+..+.++++++++
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~~ 169 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLRG 169 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeeec
Confidence 9999999872 1 125678889999999999999865 677999999999999999999888876
Q ss_pred C---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC------CCeeEEEEcCCCCEEEEEeC----C-eEEE
Q 008393 414 G---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT------KPIDSVCWDPSGELLASVSE----D-SVRV 479 (567)
Q Consensus 414 ~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------~~V~~l~~sp~g~~l~s~s~----d-~I~i 479 (567)
+ +..+.|.|-|.++++-+.|++|+||.+.+..+.+.+..+. ..+..+.|+|||.+|++... . ++.|
T Consensus 170 H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~I 249 (942)
T KOG0973|consen 170 HQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAI 249 (942)
T ss_pred ccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEE
Confidence 5 5678899999999999999999999988887777776543 35778999999999998752 2 6888
Q ss_pred EeCCCCCCCceEEEeecCCCceEEEEEeCC-------------CC----eEEEEEcCCeEEEEECCCCcEE--EeccccC
Q 008393 480 WTVGSGSEGECVHELSCNGNKFHSCVFHPT-------------YP----SLLVIGCYQSLELWNMSENKTM--TLTAHEG 540 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~~i~~~~~sp~-------------~~----~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~ 540 (567)
.+-.+. +.-..+-+|..++.+++|+|. .. .+++|+.|++|.||.....+.+ ...-...
T Consensus 250 ieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~ 326 (942)
T KOG0973|consen 250 IERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNK 326 (942)
T ss_pred EecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcC
Confidence 887544 667788999999999999882 11 5788899999999999776665 3334567
Q ss_pred CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 541 LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 541 ~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.|..++|+|||..|+.|+.||+|.+.
T Consensus 327 SI~DmsWspdG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 327 SIVDMSWSPDGFSLFACSLDGTVALI 352 (942)
T ss_pred ceeeeeEcCCCCeEEEEecCCeEEEE
Confidence 89999999999999999999999875
No 74
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=218.47 Aligned_cols=270 Identities=16% Similarity=0.262 Sum_probs=221.3
Q ss_pred cCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-Ceee-eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDT-LKSK-TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~-~~~~-~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
.-.+.|.+++||| ...+++.++.||+|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 3467899999999 556677899999999999986 3333 445679999999999999999999999999999999984
Q ss_pred CceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..+..|.++|.++.|-+... .+|++|+.|.+|++||.+....+..+.-+..+-+..-....++++..+..|.+|+
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYN 182 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEE
Confidence 4577788999999999976543 4778999999999999999999998888777777777778899999999999999
Q ss_pred CCCCeEEEEe-c-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC---------CceEEEEEeC
Q 008393 441 AETQACRLSL-Q-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHP 508 (567)
Q Consensus 441 ~~~~~~~~~~-~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~---------~~i~~~~~sp 508 (567)
++.+...... . .-+-.++||+...|....+.|+-. .+.|..+..+.. +.-..+++|. ..|.+++|+|
T Consensus 183 L~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred cCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEeec
Confidence 9876432221 1 123468899988888877888877 888888876533 3444555554 2477889999
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
....|+++|.||++.+||-.....+ ....|..+|++.+|+.+|.++|.+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 9999999999999999998877655 668899999999999999988754
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-28 Score=224.22 Aligned_cols=287 Identities=17% Similarity=0.323 Sum_probs=242.7
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
.|..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++.++.+|.+.|++|+|++.+.++++++.|++..|
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 35677889999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred EEcC------C-----------------------------C----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 356 WDAD------N-----------------------------P----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 356 wd~~------~-----------------------------~----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
|... . . ..++..+.+|.+.|.+..|...|..++ +++.|.+
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~v-TaSWDRT 295 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMV-TASWDRT 295 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceee-eeecccc
Confidence 9521 0 0 123567789999999999998877666 9999999
Q ss_pred EEEEECCCCeeeEEEeCCe---eEEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEE
Q 008393 397 IRYWSINNGSCTRVFKGGT---AQMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
-.+||+++++.+..+.++. +.++-+|....+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+. .+++|
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSg 374 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSG 374 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeec
Confidence 9999999999999998864 45567888788888888999999999864 5677899999999999998765 57889
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE-----eccccCCeeEEE
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT-----LTAHEGLIAALA 546 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~-----~~~h~~~V~~l~ 546 (567)
++| +|+|||+++.. ..+.++. ...+++.++++..++.|+.--.+..|++||+....... -.+|...|+|++
T Consensus 375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A 451 (481)
T KOG0300|consen 375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA 451 (481)
T ss_pred CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence 999 99999998764 3344443 35678888999888877777778899999999877653 358999999999
Q ss_pred EecCCC--EEEEEECCCcEEEcC
Q 008393 547 VSTETG--YVASASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~--~l~s~s~Dg~I~iWd 567 (567)
|..+-. -|++||.|..+.=|+
T Consensus 452 W~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 452 WLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred ccccCcccccccccccceeeeeE
Confidence 975442 478999999988885
No 76
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=8.9e-29 Score=246.51 Aligned_cols=268 Identities=22% Similarity=0.385 Sum_probs=231.5
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCe------eeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC-ceeEEec
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-YSLRTFM 369 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-~~~~~~~ 369 (567)
|.+++|++||.||.|++|++.... ....+..|.++|++++...+++.|++++.|-+|++|+..... .+..++.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir 114 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIR 114 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhh
Confidence 466789999999999999986322 367788999999999999999999999999999999998754 6788999
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee--eEEE------------eCCeeEEEEecCCCEEEEEECCCe
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC--TRVF------------KGGTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~--~~~~------------~~~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.|...|.|+++....+.++++|+-|+.|.+||++++.. +..+ +..+..++.++.+..++.|+.++.
T Consensus 115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~ 194 (735)
T KOG0308|consen 115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD 194 (735)
T ss_pred cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence 99999999999444477999999999999999998733 2222 234677888888888888999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|++||.++.+.+..+.+|...|.++..++||..+++++.| +|++||+... .|+.++..|...++++..+|+-.+++
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~sf~~vY 271 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSPSFTHVY 271 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCCCcceEE
Confidence 9999999999999999999999999999999999999999 9999999644 89999999999999999999999999
Q ss_pred EEEcCCeEEEEECCCC-cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSEN-KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~-~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+.|+.|+.-|+++. +...+.....+|..+..+.+..-+-+++.|+.|+-|.
T Consensus 272 sG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 272 SGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred ecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 9999999999999984 3445556667788888876555556778899999884
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-27 Score=223.68 Aligned_cols=261 Identities=21% Similarity=0.339 Sum_probs=221.3
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCC---CeEEEEeCCCcEEEEeCCCCeee----eeecccCcc
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDG---KLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSL 331 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg---~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~ 331 (567)
.+..|+..|+|+..- +....+.||+++|.+++|--.. ..|++++.|.++++|.++.++.+ ..-.+|...
T Consensus 120 tgsYDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~ 195 (423)
T KOG0313|consen 120 TGSYDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRS 195 (423)
T ss_pred EeecCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccc
Confidence 455678889998754 5788999999999988875433 36999999999999998876543 333499999
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCC------------------------CceeEEeccCCCcEEEEEEcCCCCeE
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNP------------------------GYSLRTFMGHSASVMSLDFHPNKDDL 387 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~------------------------~~~~~~~~~h~~~V~~l~~~p~~~~l 387 (567)
|-+|...+++..+++|+.|.+|+||+..+. +.++.++.+|..+|.++.|++. ..
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v 273 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TV 273 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--Cc
Confidence 999999999999999999999999993311 1346678899999999999973 46
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCC---eEEEEecCCCCCeeEEEE
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCW 462 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~ 462 (567)
+++++.|.+|+.||+.++.++..+.+ ...++.+++....+++++.|..|++||.+++ .....|.+|.+.|.++.|
T Consensus 274 ~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkw 353 (423)
T KOG0313|consen 274 IYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKW 353 (423)
T ss_pred eEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheec
Confidence 77999999999999999999887765 4688889999999999999999999999986 456789999999999999
Q ss_pred cCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 463 DPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 463 sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
+|.. ..|++++.| ++++||+++.. ..+..+.+|...|.++.|.. +.+|++||.|.+|+|+...
T Consensus 354 sp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 354 SPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9954 578889999 99999998752 47889999999999999975 4569999999999998653
No 78
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=3.6e-27 Score=245.98 Aligned_cols=259 Identities=25% Similarity=0.451 Sum_probs=225.1
Q ss_pred CCCCCCCccceeccCCccceeeee-eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANS-VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF 337 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f 337 (567)
.+..+.++++|+..++ ..+.. +.||.+.|.+++|..-+.+|++|+.|.+++|||..++.+...+.+|...|.++..
T Consensus 223 ~~s~~~tl~~~~~~~~---~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~ 299 (537)
T KOG0274|consen 223 SGSDDSTLHLWDLNNG---YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI 299 (537)
T ss_pred ecCCCceeEEeecccc---eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc
Confidence 4455667788888777 45555 9999999999999988889999999999999999999999999999999999987
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~ 417 (567)
.+ .++++|+.|.+|++|++.+ +..+..+.+|.+.|.++.++ ..++++|+.|+.|++||+.++++++.+.++...
T Consensus 300 ~~--~~~~sgs~D~tVkVW~v~n-~~~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~ 373 (537)
T KOG0274|consen 300 DP--FLLVSGSRDNTVKVWDVTN-GACLNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR 373 (537)
T ss_pred cC--ceEeeccCCceEEEEeccC-cceEEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhceeeeeecCCcce
Confidence 64 4788899999999999997 78899999999999999998 336779999999999999999999999987544
Q ss_pred EE-EecCC-CEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 418 MR-FQPHL-GRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 418 ~~-~~~~~-~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
+. +..+. ..++.++.|+.|++||+++. +++..+.+|..-|..+.+ .+++|++++.| .|++||..++ .+++.
T Consensus 374 V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~ 448 (537)
T KOG0274|consen 374 VYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRT 448 (537)
T ss_pred EEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeee
Confidence 33 24444 89999999999999999999 999999999998876654 47899999999 9999999777 78888
Q ss_pred eec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 494 LSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 494 ~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
+.+ +...+..+++. ...+++++.++.+++||++.+...
T Consensus 449 ~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~ 487 (537)
T KOG0274|consen 449 LEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI 487 (537)
T ss_pred eccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence 887 56778777776 567999999999999999998876
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=5.9e-27 Score=226.94 Aligned_cols=237 Identities=22% Similarity=0.286 Sum_probs=203.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
...|+++.|-.||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+|.+ ..|++|++|+.+++||+.+ ....
T Consensus 68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~ 146 (487)
T KOG0310|consen 68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQ 146 (487)
T ss_pred ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEE
Confidence 5578899999999999999999999999988877888999999999999999965 4778888999999999998 5556
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+.+|++.|.|.+|+|-.+++++||+.||.|++||++.. ..+..+.. ++..+.+-|.+..++ .+..+.|++||+.
T Consensus 147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~ia-sAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIA-SAGGNSVKVWDLT 225 (487)
T ss_pred EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEE-EcCCCeEEEEEec
Confidence 6889999999999999999999999999999999999987 56666654 678888988865554 4556799999999
Q ss_pred CC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 443 TQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 443 ~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+| +.+..+..|...|+|+++..++..|++++-| .|++||+.+. +.++.+. ..++|.+|+++|++..+++|..+|
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNG 301 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEecccc
Confidence 65 5555556699999999999999999999999 9999997554 6666665 467899999999999999999999
Q ss_pred eEEEEECCC
Q 008393 521 SLELWNMSE 529 (567)
Q Consensus 521 ~I~iwd~~~ 529 (567)
.+.+-+...
T Consensus 302 lv~~rr~~~ 310 (487)
T KOG0310|consen 302 LVSIRRREV 310 (487)
T ss_pred eeeeehhhc
Confidence 887775443
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=4.2e-27 Score=248.20 Aligned_cols=250 Identities=22% Similarity=0.390 Sum_probs=215.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------------CeeeeeecccCccEEEEEECC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------------------LKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------------------~~~~~~l~~h~~~V~~i~fsp 339 (567)
+.+.....|.+.|+|+.|++||++||+|++|+.|.||+... .+.+..+.+|...|.+++|+|
T Consensus 60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp 139 (942)
T KOG0973|consen 60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP 139 (942)
T ss_pred hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC
Confidence 45677889999999999999999999999999999998762 246778899999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 413 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------ 413 (567)
++.+|++++.|++|.||+..+. ..+..+.+|.+.|..+.|.|-|. +|++-+.|++|+||++.+-.+.+.+..
T Consensus 140 ~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~ 217 (942)
T KOG0973|consen 140 DDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESP 217 (942)
T ss_pred CccEEEEecccceEEEEccccc-eeeeeeecccccccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCC
Confidence 9999999999999999999994 88999999999999999999987 566999999999999888777776654
Q ss_pred ---CeeEEEEecCCCEEEEEEC----CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-----CC------------EE
Q 008393 414 ---GTAQMRFQPHLGRYLAAAA----ENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GE------------LL 469 (567)
Q Consensus 414 ---~~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----g~------------~l 469 (567)
....+.|+|+|.+|++... ...+.|.+-.+++.-..|-+|.+++.+++|+|. .+ .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~ 297 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIA 297 (942)
T ss_pred CcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEE
Confidence 3456789999999988765 348999999999999999999999999999871 11 68
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
|+|+.| .|.||.....+..-.++. .....|..++|+|||..|++++.||+|.++.+++.+
T Consensus 298 AvgSqDrSlSVW~T~~~RPl~vi~~--lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 298 AVGSQDRSLSVWNTALPRPLFVIHN--LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred EEecCCccEEEEecCCCCchhhhhh--hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 889999 999999865433333333 346779999999999999999999999999987654
No 81
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.9e-27 Score=213.79 Aligned_cols=264 Identities=18% Similarity=0.306 Sum_probs=219.3
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 351 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg 351 (567)
.+.+..+..+..|.++|+|+|.+ +.++|+|+.|-+|+|||+.+.+.+..+-.|.+.|+++.|.+.-. .|++|+.||
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG 107 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDG 107 (362)
T ss_pred ceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCC
Confidence 45667788899999999999987 77999999999999999999999999999999999999998765 899999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~ 429 (567)
.|.+|+... ..++.++++|.+.|+.|+.+|.++ |.++.+.|+.++.||+-+|+.-.. ++.....+.|+|.|.++++
T Consensus 108 ~i~iw~~~~-W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 108 HIIIWRVGS-WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVV 185 (362)
T ss_pred cEEEEEcCC-eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEE
Confidence 999999997 788999999999999999999976 666888899999999999886554 4455666999999888877
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE--
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF-- 506 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~-- 506 (567)
+.. +.|-+|.+++......+.. ...+.|+.|. ++..|++|.++ .|++||..+. .+...+..|...|..+.+
T Consensus 186 ~~~-~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~ 259 (362)
T KOG0294|consen 186 SGR-NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLKDTDSD---TPLTEFLAHENRVKDIASYT 259 (362)
T ss_pred Eec-cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEeccCCC---ccceeeecchhheeeeEEEe
Confidence 665 5678888887665554442 2557777775 45677788888 9999999764 788899999999999884
Q ss_pred eCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEE
Q 008393 507 HPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAV 547 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~ 547 (567)
.|++.+|++++.||.|++||++... .+....-...++|+..
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~ 305 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRV 305 (362)
T ss_pred cCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeee
Confidence 4678899999999999999998762 3333334556667665
No 82
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.7e-27 Score=213.86 Aligned_cols=283 Identities=20% Similarity=0.290 Sum_probs=214.0
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeec--ccCccEEEEEECCCCCeEEEE-eCCCcEE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLE--EHSSLITDVRFSPSMPRLATS-SFDKTVR 354 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~--~h~~~V~~i~fsp~~~~l~s~-s~dg~I~ 354 (567)
+..|++|.+.|+|++|+.||++||+++.|+.|+||+++.+... +.++ -..+.-+.++|.||-+-++.. -...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4578999999999999999999999999999999999875332 1111 122356789999998765554 4556799
Q ss_pred EEEcCCCC---ce--------eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEE
Q 008393 355 VWDADNPG---YS--------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRF 420 (567)
Q Consensus 355 iwd~~~~~---~~--------~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~ 420 (567)
+|.+.... .. ......|.-.|..+-.... ..+|++++.|..|.+|+++ |..+..+.. .....+.
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav 236 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV 236 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence 99875311 11 1122345666777766655 4577799999999999999 777776654 3456789
Q ss_pred ecCCCEEEEEECCCeEEEEECC---CC-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC----CC
Q 008393 421 QPHLGRYLAAAAENVVSILDAE---TQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG----SE 487 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~---~~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~----~~ 487 (567)
+|+|..+++++..-.|++|++- .| ..+..+++|...|..++|+++...+++.+.| +++|||..-. ..
T Consensus 237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD 316 (420)
T KOG2096|consen 237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD 316 (420)
T ss_pred CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence 9999999999999999999863 22 3456789999999999999999999999999 9999998632 22
Q ss_pred CceEEEe----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 488 GECVHEL----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 488 ~~~i~~~----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
++.+.+. ...+..-..+.++|.|..|++. ....|.+|..++++.+ ....|...|.+++|+++|++++|+| |.
T Consensus 317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 3333322 2223444588999999965554 4468999999998877 3458999999999999999999998 45
Q ss_pred cEEEc
Q 008393 562 FVKLW 566 (567)
Q Consensus 562 ~I~iW 566 (567)
.++++
T Consensus 395 ~vrv~ 399 (420)
T KOG2096|consen 395 YVRVI 399 (420)
T ss_pred eeeee
Confidence 66654
No 83
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-25 Score=195.70 Aligned_cols=288 Identities=20% Similarity=0.291 Sum_probs=235.5
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------C---------eeeeeecccCccEEEEEECC
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------L---------KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------~---------~~~~~l~~h~~~V~~i~fsp 339 (567)
..|+.+..+. .+..|.+++|+|.|.+.|+|+..++++|-.... + ...+.-+.|.+.|.|.+|+|
T Consensus 21 ~~f~~i~~l~-dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 21 KHFEAINILE-DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSP 99 (350)
T ss_pred cceEEEEEec-chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecC
Confidence 3455565554 467899999999999999999999988864321 1 11123457999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCCCcEEEEEEcCC---CCeEEEEEe-CCCcEEEEECCCCeeeEEE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPN---KDDLICSCD-GDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~~p~---~~~li~s~~-~dg~I~iwd~~~~~~~~~~ 411 (567)
+|.+|++|+.|++|++.-+..... .-..+.-|.+.|..++|..+ +..++++++ .|..|++-|...+.....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999999999987654221 12456679999999999643 445665554 4788888899999988888
Q ss_pred eCCeeEE--EEecCCCEEEEEECCCeEEEEECCCCeEEEEecC--C-----CCCeeEEEEcCCCCEEEEEeCC-eEEEEe
Q 008393 412 KGGTAQM--RFQPHLGRYLAAAAENVVSILDAETQACRLSLQG--H-----TKPIDSVCWDPSGELLASVSED-SVRVWT 481 (567)
Q Consensus 412 ~~~~~~~--~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~--h-----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd 481 (567)
.++...+ .++.++-.++.++.|.+|++||++-..++.++.. | ...|.+++..|.|++|++|-.| ...+||
T Consensus 180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 8765443 2566677888888999999999999988887753 2 3579999999999999999999 999999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEEecCCCEEEE
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spdg~~l~s 556 (567)
++.+ ..+..+..|...|.++.|+|...|+++++.|..|++-|+...- .+.+..|...+..+.|+|..--+++
T Consensus 260 irg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 260 IRGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred eeCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeee
Confidence 9877 7888999999999999999999999999999999999997542 3366789999999999999988999
Q ss_pred EECCCcEEEc
Q 008393 557 ASHDKFVKLW 566 (567)
Q Consensus 557 ~s~Dg~I~iW 566 (567)
.+.|.++.+|
T Consensus 337 ssadkt~tlw 346 (350)
T KOG0641|consen 337 SSADKTATLW 346 (350)
T ss_pred ccCcceEEEe
Confidence 9999999999
No 84
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.1e-25 Score=234.80 Aligned_cols=224 Identities=17% Similarity=0.264 Sum_probs=181.8
Q ss_pred eeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCCC-CeEEEEeCCC
Q 008393 281 NSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPSM-PRLATSSFDK 351 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg 351 (567)
..+.+|.+.|++++|+| ++++||+|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 45789999999999999 8899999999999999999765 3567889999999999999985 6999999999
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----eEEEEecCCCEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMRFQPHLGRY 427 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~l 427 (567)
+|+|||+.+ +..+..+.+|...|.+++|+|++. ++++++.|+.|++||+++++.+..+.++. ..+.|.++++.+
T Consensus 149 tVrIWDl~t-g~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 149 VVNVWDVER-GKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEEECCC-CeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999997 667788889999999999999976 56699999999999999999888776542 356788888888
Q ss_pred EEEEC----CCeEEEEECCCCe-EEEEecCC-CCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCCCCCceEEEeec-CC
Q 008393 428 LAAAA----ENVVSILDAETQA-CRLSLQGH-TKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSGSEGECVHELSC-NG 498 (567)
Q Consensus 428 ~~~~~----dg~I~i~d~~~~~-~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~~-~~ 498 (567)
++++. |+.|++||+++.. ++.....+ ...+....|++++++|++++. | .|++||+.++. .+..... ..
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~ 303 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSV 303 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCC
Confidence 87653 6899999998764 33333333 345666779999999998874 6 99999998763 3333322 34
Q ss_pred CceEEEEEeCC
Q 008393 499 NKFHSCVFHPT 509 (567)
Q Consensus 499 ~~i~~~~~sp~ 509 (567)
.++..++|.|.
T Consensus 304 ~~~~g~~~~pk 314 (493)
T PTZ00421 304 EPHKGLCMMPK 314 (493)
T ss_pred CCCcceEeccc
Confidence 45677788775
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=2.1e-26 Score=235.52 Aligned_cols=337 Identities=19% Similarity=0.294 Sum_probs=271.4
Q ss_pred CCceeeeCCCcchhhcccccccCCCCCCceEEeeccC-----CCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEE
Q 008393 221 PSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHD-----DTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHF 295 (567)
Q Consensus 221 ~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 295 (567)
+..++|+.+++..+..+..+... +.+..... ..+..++.+.++++..+ +.+.+|+.-.+.|++++|
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~------IT~ieqsPaLDVVaiG~~~G~ViifNlK~d---kil~sFk~d~g~VtslSF 252 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSR------ITAIEQSPALDVVAIGLENGTVIIFNLKFD---KILMSFKQDWGRVTSLSF 252 (910)
T ss_pred CcEEEEEeccCcEEEEecccccc------eeEeccCCcceEEEEeccCceEEEEEcccC---cEEEEEEccccceeEEEe
Confidence 34699999999888877776632 22222211 24556777888888777 567778766799999999
Q ss_pred cCCCC-eEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC---ceeEEecc
Q 008393 296 SSDGK-LLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG---YSLRTFMG 370 (567)
Q Consensus 296 s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~ 370 (567)
..||. ++|+|+..|.+.+||++..+.+..+. .|.+.|....|.+....|++++.|..+++|=.+++. ..++...|
T Consensus 253 rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 253 RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred ccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 99997 55677777999999999988887776 899999999999999999999999999999776422 35666778
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-----------------------------------------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN----------------------------------------------- 403 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~----------------------------------------------- 403 (567)
|..+..||.|.-...+.+.+.+.|++++.+++.
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 999999999985555566677777777666542
Q ss_pred ------------------CCee-eEEE--------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe---cCC
Q 008393 404 ------------------NGSC-TRVF--------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL---QGH 453 (567)
Q Consensus 404 ------------------~~~~-~~~~--------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~---~~h 453 (567)
+... ...+ .....+++.++.|+..+.|...|.|.+|++.+|-....+ ..|
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah 492 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH 492 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence 1111 0001 123567888999999999999999999999999988888 479
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------------------------------------CceEEEe
Q 008393 454 TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE--------------------------------------GECVHEL 494 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~--------------------------------------~~~i~~~ 494 (567)
..+|+.++.+.-++.+++++.+ .+++||+..... .+.++.+
T Consensus 493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f 572 (910)
T KOG1539|consen 493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF 572 (910)
T ss_pred cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh
Confidence 9999999999999999999888 999999975320 0123356
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
.+|.+.|+.++|+|||++|++++.|++|++||+.++..+.......++.++.|+|+|.+|||+..| .-|++|
T Consensus 573 ~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 573 WGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEE
Confidence 688999999999999999999999999999999999999877888999999999999999999988 669998
No 86
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=195.96 Aligned_cols=247 Identities=19% Similarity=0.338 Sum_probs=208.3
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee-----eeeecccCccEEEEEECCC----CCeEEEEeC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-----KTNLEEHSSLITDVRFSPS----MPRLATSSF 349 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~-----~~~l~~h~~~V~~i~fsp~----~~~l~s~s~ 349 (567)
..+.-+.|.+.|+|.+|+|+|.+||+|+.|++|++.-++...+ ...+.-|.+.|..++|..+ +.+|++++.
T Consensus 81 ~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 81 LCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred EeeeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 3455678999999999999999999999999999987654322 2346679999999999653 446777654
Q ss_pred -CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----------CeeEE
Q 008393 350 -DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----------GTAQM 418 (567)
Q Consensus 350 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----------~~~~~ 418 (567)
|..|++-|... +..+..+.+|++.|.++--. + ..++++|+.|.+|++||++-..++.++.. .+..+
T Consensus 161 gdc~iy~tdc~~-g~~~~a~sghtghilalysw-n-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 161 GDCKIYITDCGR-GQGFHALSGHTGHILALYSW-N-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred CcceEEEeecCC-CCcceeecCCcccEEEEEEe-c-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 77788888887 77889999999999887433 2 45888999999999999999998887642 35678
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-CCCceEEEeec
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSC 496 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-~~~~~i~~~~~ 496 (567)
+..|.+..++++-.|....+||++.++.+..+..|...|.|+.|+|...|+++++.| .|++-|+... .....+.....
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~e 317 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAE 317 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEe
Confidence 899999999999999999999999999999999999999999999999999999999 9999999643 12234556677
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
|...+..|.|+|..-.+++.+.|.++.+|-+.
T Consensus 318 hkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 318 HKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 88999999999999999999999999999764
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=5.8e-27 Score=210.01 Aligned_cols=239 Identities=23% Similarity=0.401 Sum_probs=208.0
Q ss_pred eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
+.+.+|...|.+|+|+.+|..|++|+.|+++.+|+++..... -....+|.+.|-.++|+|....++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 456789999999999999999999999999999999863221 1345689999999999999999999999999999999
Q ss_pred CCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC-CeEE
Q 008393 402 INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-DSVR 478 (567)
Q Consensus 402 ~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d~I~ 478 (567)
++.++++..+. ++...+.|+|++++++++..|..|.++|.++.+.....+ ....+..++|+.++.+++.... ++|.
T Consensus 94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence 99999987765 466778999999999999999999999999988776655 4466788999877776555444 5899
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
|...... +.+..+..|.....|+.|+|+|+++++|+.|..+.+||+.+.-+. .+..+.-+|+.|.|+.||++||+|
T Consensus 173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 9888644 788899999999999999999999999999999999999988776 677889999999999999999999
Q ss_pred ECCCcEEE
Q 008393 558 SHDKFVKL 565 (567)
Q Consensus 558 s~Dg~I~i 565 (567)
++|..|-|
T Consensus 250 SEDh~IDI 257 (313)
T KOG1407|consen 250 SEDHFIDI 257 (313)
T ss_pred CccceEEe
Confidence 99988754
No 88
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=226.26 Aligned_cols=258 Identities=22% Similarity=0.368 Sum_probs=223.7
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|..+++|++.-.. .+.+.+|.|..+.|+.+.|.++++++++++.|+.+++|+++..+...+|.+|.+.|+++.|.
T Consensus 192 tgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 192 TGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred hcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhh
Confidence 56667778899887554 67888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~ 416 (567)
.....+++|+.|.+|++||+.. .++.+++. ....+..|+.. ...+++|..|++|++||+++..+...... .++
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt 345 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT 345 (459)
T ss_pred ccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec---ceeeeecccccceEEEeccCCceeeEeecCccee
Confidence 8877799999999999999997 66666554 34556666665 34567999999999999999999888764 578
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC----CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH----TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
.+..++++..+++++.|..+.++|+++.+....+... ...++.++|+|++.|+++|+.| .|+||++.++ ++.
T Consensus 346 Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE 422 (459)
T KOG0288|consen 346 SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLE 422 (459)
T ss_pred eEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEE
Confidence 8999999999999999999999999999888877642 2347889999999999999999 9999999887 555
Q ss_pred EEeecCCC--ceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 492 HELSCNGN--KFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 492 ~~~~~~~~--~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
..+..... .|++++|+|.|.++++++.++.+.+|
T Consensus 423 ~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 423 KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 55555444 49999999999999999999999998
No 89
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=5.7e-27 Score=209.25 Aligned_cols=246 Identities=21% Similarity=0.342 Sum_probs=203.9
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCC-CCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEE
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVR 354 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~ 354 (567)
.+...+.- .+.+..++|++.. +.+++++.||+++|||+. ..+++..+++|...|.++.|++. ...+++++.|++|+
T Consensus 52 ~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 52 QECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred EEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 34444432 5678899999965 577888999999999964 34678899999999999999985 45688889999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCE-EEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGR-YLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~-l~~~ 430 (567)
+|+... ...+.++.+|...|....|+|....++++++.|+++++||++.......+.. .+.++.|+..... ++++
T Consensus 131 LW~~~r-~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 131 LWDPNR-PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred eecCCC-CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEec
Confidence 999987 7788999999999999999999999999999999999999987543333443 4566778776554 5566
Q ss_pred ECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 431 AAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 431 ~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
+.|+.|++||++.. .++..+.+|.-.|+.++|+|. ..+|++++.| +++|||..... .++.+...|..-+..+.|+
T Consensus 210 ~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws 287 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWS 287 (311)
T ss_pred CCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccccc
Confidence 67999999999985 678889999999999999995 5699999999 99999997442 4666677788888888988
Q ss_pred C-CCCeEEEEEcCCeEEEEEC
Q 008393 508 P-TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 508 p-~~~~l~~~~~dg~I~iwd~ 527 (567)
+ +..+++.++.|+.++||+-
T Consensus 288 ~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 288 LFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cccCceeeecccccceeeecc
Confidence 8 5568999999999999984
No 90
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.1e-26 Score=233.28 Aligned_cols=347 Identities=13% Similarity=0.193 Sum_probs=266.3
Q ss_pred CCCceeeeCCCcchhhcccccccC-------------------CCCCCceEEeeccCC----CCCCCCCccceeccCCcc
Q 008393 220 SPSNQLWDDKDLELRADMDRLVED-------------------GSLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 220 ~~~~~~Wd~~~g~~~~~~~~~~~~-------------------~~~~~~v~~~~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
.+.++|++..+.+....+.+.-.- +.+.|.+.+.+.+.. -...|....+||+.+-..
T Consensus 279 ~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~k 358 (1080)
T KOG1408|consen 279 KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNK 358 (1080)
T ss_pred cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccc
Confidence 345688888877666666544332 223333333332211 122345667899998877
Q ss_pred ceeeeeeccCCCCeEEEEEcCC-----------CCeEEEEeCCCcEEEEeCCCCeeeeee--------------------
Q 008393 277 FKEANSVRASTSKVICCHFSSD-----------GKLLATGGHDKKAVLWHTDTLKSKTNL-------------------- 325 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~d-----------g~~lasg~~dg~I~vwd~~~~~~~~~l-------------------- 325 (567)
......+--|...|+.+.--|. ...++|++.|++|++|+++.+..-..+
T Consensus 359 vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q 438 (1080)
T KOG1408|consen 359 VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQ 438 (1080)
T ss_pred ccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchh
Confidence 7778888899999999887662 135889999999999998752111100
Q ss_pred -----------------cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC--CCe
Q 008393 326 -----------------EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN--KDD 386 (567)
Q Consensus 326 -----------------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~--~~~ 386 (567)
-+....|++++.+|++.+||+|..-|+++||++.+ ......+..|...|.|+.|+.. +..
T Consensus 439 ~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-l~~~~~~eAHesEilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 439 IMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-LEYTCFMEAHESEILCLEYSFPVLTNK 517 (1080)
T ss_pred hhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-hhhhhheecccceeEEEeecCchhhhH
Confidence 01345699999999999999999999999999997 5566778899999999999743 456
Q ss_pred EEEEEeCCCcEEEEECCCC-eeeEEEeC---CeeEEEEecCC--CEEEEEECCCeEEEEECCCCeEEEEecC-----CCC
Q 008393 387 LICSCDGDGEIRYWSINNG-SCTRVFKG---GTAQMRFQPHL--GRYLAAAAENVVSILDAETQACRLSLQG-----HTK 455 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~-~~~~~~~~---~~~~~~~~~~~--~~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h~~ 455 (567)
|+++++.|..|.|||+... ..+.++.+ .++.+.|...+ .+++.++.|..|.+--..+......+.. ...
T Consensus 518 LLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~kt 597 (1080)
T KOG1408|consen 518 LLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKT 597 (1080)
T ss_pred hhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccc
Confidence 8999999999999999754 34455544 46778887776 5678888888876654432221222222 235
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM- 533 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~- 533 (567)
.++.++..|..+++++++.| .|+|||+.+++..+.++--..+++....+...|.|.||++.+.|.+|.+||+.+++++
T Consensus 598 TlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 598 TLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence 68899999999999999999 9999999998666666666667788889999999999999999999999999999999
Q ss_pred EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 534 TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+.+|...|+.+.|.+|.+.|++.+.||.|.||+
T Consensus 678 ~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~ 711 (1080)
T KOG1408|consen 678 QMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK 711 (1080)
T ss_pred hhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence 8899999999999999999999999999999995
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.8e-26 Score=232.06 Aligned_cols=237 Identities=19% Similarity=0.312 Sum_probs=207.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
.+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|. +..+.+|+.|+.|..+|+......+
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 78899999999999999999999999999999999999998 99999999998 6689999999999999999866555
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEEC---CCeEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAA---ENVVSIL 439 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~---dg~I~i~ 439 (567)
.++.+|...|..+.|++++. .+++|+.|+.+.|||......+..+. ..+..++|+|....+++.+. |+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 56889999999999999976 55699999999999997766665554 46778899998766666443 8999999
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe-C-C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVS-E-D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~-d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
|..+++.+..+. ....|.+|.|++..+-|+++. . + .|.||++.+. ..+..+.+|...|..++++|||..|++|
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 999999887776 457899999999886555543 2 2 7999999774 7889999999999999999999999999
Q ss_pred EcCCeEEEEECCCC
Q 008393 517 GCYQSLELWNMSEN 530 (567)
Q Consensus 517 ~~dg~I~iwd~~~~ 530 (567)
+.|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 99999999998764
No 92
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=8.7e-27 Score=240.06 Aligned_cols=244 Identities=19% Similarity=0.335 Sum_probs=196.2
Q ss_pred eeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC--------------------------------C-----
Q 008393 320 KSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--------------------------------P----- 361 (567)
Q Consensus 320 ~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~--------------------------------~----- 361 (567)
.....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+.. .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344455 8999999999999999999999999999997654 0
Q ss_pred ----------------------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeE
Q 008393 362 ----------------------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQ 417 (567)
Q Consensus 362 ----------------------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~ 417 (567)
.+++..+.||.+.|.+|.|+.+ ++|++++-|.+|++|++...+|++.|.. .++|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 0124556799999999999976 3666999999999999999999998864 6899
Q ss_pred EEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 418 MRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 418 ~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
++|+|.+ ++|+.|+-|+.|+||++...+.+.-...+ .-|+++||.|||++.+.|+.+ .+++|+....+..... .+.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~-~I~ 492 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDF-HIR 492 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEee-eEe
Confidence 9999955 56778888999999999998888666544 789999999999999999998 9999998754221111 111
Q ss_pred cC------CCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEE-EeccccC--CeeEEEEecCCCEEEEEECCCcEEE
Q 008393 496 CN------GNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTM-TLTAHEG--LIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 496 ~~------~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+ ...|+.+.|.|... .|++.+.|..|+|||.++...+ .+.++.. .-....|+.||++|+++++|..|+|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYi 572 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYI 572 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEE
Confidence 11 33799999997544 6999999999999999877766 4554332 2345578899999999999999999
Q ss_pred cC
Q 008393 566 WK 567 (567)
Q Consensus 566 Wd 567 (567)
|+
T Consensus 573 W~ 574 (712)
T KOG0283|consen 573 WK 574 (712)
T ss_pred Ee
Confidence 96
No 93
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=1e-25 Score=206.90 Aligned_cols=269 Identities=18% Similarity=0.254 Sum_probs=216.9
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
-...|..+.|+|.+..|++++.||.+++||+........++ |..++.+++|.+ ...+++|+.||.|+++|+.+...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-- 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-- 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcc--
Confidence 36789999999999999999999999999999875555554 889999999987 55899999999999999997433
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
..+..|...|.||.+.+..+ .+++|+.|++|++||.+.......+..+....+.+-.++.|++|+.+..|.+||+++..
T Consensus 88 ~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEccccc
Confidence 55667999999999997755 55599999999999999877777776666667778889999999999999999999876
Q ss_pred EEEEecC--CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-CCCceEEEeecCC---------CceEEEEEeCCCCe
Q 008393 446 CRLSLQG--HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-SEGECVHELSCNG---------NKFHSCVFHPTYPS 512 (567)
Q Consensus 446 ~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-~~~~~i~~~~~~~---------~~i~~~~~sp~~~~ 512 (567)
....... -+-.+.||++.|++.=+++++-+ .|.+=.+... ........+++|. .+|++++|+|-...
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~t 246 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGT 246 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccce
Confidence 5443322 34578999999987767777766 6655444433 1112333444442 35899999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC
Q 008393 513 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
|++|+.||.|.+||+...+.+ .+......|.+++|+.+|..||+|+.
T Consensus 247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999999999999988877 56666778999999999999999874
No 94
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-25 Score=206.19 Aligned_cols=256 Identities=21% Similarity=0.388 Sum_probs=206.9
Q ss_pred EEEEeCCCcEEEEeCC------------CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 302 LATGGHDKKAVLWHTD------------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 302 lasg~~dg~I~vwd~~------------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
|++|++...|.-+++. +....+.+..|.+.|++++.+ +.++|+|+.|.+|+|||+.. ...+..+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k-~~qlg~ll 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRK-RKQLGILL 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccc-hhhhccee
Confidence 5666666666666553 223466778999999999985 78999999999999999998 56677778
Q ss_pred cCCCcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCC
Q 008393 370 GHSASVMSLDFHPNKD--DLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQ 444 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~ 444 (567)
.|.+.|+++.|.+.-. +|+ +|+.||.|.+|+....+++..++. .++.++++|.+...++.+.|+.+++||+-++
T Consensus 81 ~HagsitaL~F~~~~S~shLl-S~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLL-SGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRG 159 (362)
T ss_pred ccccceEEEEecCCcchhhee-eecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcC
Confidence 8999999999988753 566 999999999999999998888765 4788899999999999999999999999998
Q ss_pred eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 445 ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 445 ~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
+..+.+.-. ..-+.+.|+|.|.+++.+..+.|-+|.+.+- ..+.++.. ...+.++.|- ++.+|++|+.++.|.+
T Consensus 160 r~a~v~~L~-~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 160 RVAFVLNLK-NKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred ccceeeccC-CcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeeec-CCceEEEecCCceEEE
Confidence 776665532 2334599999999999999999999998764 22222221 2334454444 5667999999999999
Q ss_pred EECCCCcEE-EeccccCCeeEEEE--ecCCCEEEEEECCCcEEEcC
Q 008393 525 WNMSENKTM-TLTAHEGLIAALAV--STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 525 wd~~~~~~~-~~~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iWd 567 (567)
||....... .+.+|...|.++.+ .|++.||+|++.||.|+|||
T Consensus 234 ~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 234 KDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred eccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 999987766 78899999999985 46788999999999999997
No 95
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-25 Score=216.60 Aligned_cols=271 Identities=20% Similarity=0.282 Sum_probs=221.1
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee----ee-------------e-cccCccEEEEEECCCC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TN-------------L-EEHSSLITDVRFSPSM 341 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~----~~-------------l-~~h~~~V~~i~fsp~~ 341 (567)
+..+..|.-+|.||++++|++++++++.+++|.-|++.+++.. .. - +.|...|.+++.++|+
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 6778899999999999999999999999999999999877633 11 0 2688899999999999
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC---eeEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG---TAQM 418 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~---~~~~ 418 (567)
+||++|+.|..|.||+.++ ...+..+.+|.+.|.+++|-.....++ +++.|+.|++|++.....+.++-++ +..+
T Consensus 215 kylatgg~d~~v~Iw~~~t-~ehv~~~~ghr~~V~~L~fr~gt~~ly-s~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I 292 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDT-LEHVKVFKGHRGAVSSLAFRKGTSELY-SASADRSVKVWSIDQLSYVETLYGHQDGVLGI 292 (479)
T ss_pred cEEEecCCCceEEEecCcc-cchhhcccccccceeeeeeecCcccee-eeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence 9999999999999999998 778888999999999999987655555 8999999999999988877776554 4455
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee--
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-- 495 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-- 495 (567)
.....+..+-+++.|.++++|++ ..+....+.+|.+.+-|++|-.+ ..+++|+++ .|.+|++-..+ .+....
T Consensus 293 daL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKk---plf~~~~A 367 (479)
T KOG0299|consen 293 DALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKK---PLFTSRLA 367 (479)
T ss_pred chhcccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccC---ceeEeecc
Confidence 55555566666778999999999 44445578889999999999755 567889988 99999997652 222221
Q ss_pred ----------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc----EEEeccccCCeeEEEEecCCCEEEEE
Q 008393 496 ----------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK----TMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 496 ----------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~----~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+..+|++++..|....+++|+.+|.|++|-+.++. .+.-....+.|++|+|+++|++|++|
T Consensus 368 Hgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 368 HGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence 112378999999999999999999999999999883 22333467899999999999966554
No 96
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-24 Score=227.63 Aligned_cols=243 Identities=16% Similarity=0.199 Sum_probs=185.8
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCe--------eeeeecccCc
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLK--------SKTNLEEHSS 330 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~--------~~~~l~~h~~ 330 (567)
++.++.+++|+..+. ..+..+++|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++. .+..+.+|..
T Consensus 50 GG~~gvI~L~~~~r~---~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred CCceeEEEeeecCCC---ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 445566778876554 467789999999999999996 7899999999999999997542 3446789999
Q ss_pred cEEEEEECCCCCe-EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 331 LITDVRFSPSMPR-LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 331 ~V~~i~fsp~~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
.|.+++|+|++.. |++++.|++|+|||+.+ +..+..+. |...|.+++|+++|. ++++++.|+.|+|||+++++.+.
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~ 203 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIAS 203 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEE
Confidence 9999999999875 57899999999999998 44445554 667899999999987 45578889999999999999888
Q ss_pred EEeCCee---E-----EEEecCCCEEEEEECCC----eEEEEECCC-CeEEEEec--CCCCCeeEEEEcCCCCEEEEEeC
Q 008393 410 VFKGGTA---Q-----MRFQPHLGRYLAAAAEN----VVSILDAET-QACRLSLQ--GHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ~~~~~~~---~-----~~~~~~~~~l~~~~~dg----~I~i~d~~~-~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+.++.. . ..|+++++.+++++.++ .|+|||+++ .+++..+. .+.+.+......++|.++++|+.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkG 283 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKG 283 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEEC
Confidence 8776432 1 12457888999988764 799999995 45555443 23334434444556889999988
Q ss_pred C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 475 D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 475 d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
| .|++|++..+. ...+..+. +..++.+++|.|..
T Consensus 284 D~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 284 DGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred CCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 8 99999997652 22333333 45677888999864
No 97
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.6e-24 Score=200.18 Aligned_cols=247 Identities=19% Similarity=0.326 Sum_probs=205.1
Q ss_pred CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-CCCc
Q 008393 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGE 396 (567)
Q Consensus 318 ~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-~dg~ 396 (567)
..+..+.+......|.++.|+++|.+|++++.|.+++|||..+ +..++++..+...|..++|......++.+.. .|.+
T Consensus 3 s~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t 81 (311)
T KOG1446|consen 3 SFRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-GKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT 81 (311)
T ss_pred ccccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-CceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence 3455566666778899999999999999999999999999998 7788888888888999999777666664432 3889
Q ss_pred EEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe
Q 008393 397 IRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s 473 (567)
|+..++.+.+.++.|.++ +..++.+|-+..++.++.|++|++||++..++...+.....+ .++|+|.|-++|++.
T Consensus 82 IryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 82 IRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALAN 159 (311)
T ss_pred eEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEec
Confidence 999999999999999986 577889999999999999999999999988877766544344 478999999999999
Q ss_pred CC-eEEEEeCCCCCC-CceEEEee-cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCC---eeEEE
Q 008393 474 ED-SVRVWTVGSGSE-GECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGL---IAALA 546 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~-~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~---V~~l~ 546 (567)
.. .|++||+++... +.....+. .....++.+.|+|||++|+.+...+.+++.|.-+|... .+..+... --..+
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence 88 999999997633 22222222 44677899999999999999999999999999999876 45444432 25678
Q ss_pred EecCCCEEEEEECCCcEEEcC
Q 008393 547 VSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+||+++|++|+.||+|.+|+
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEE
Confidence 999999999999999999996
No 98
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.4e-25 Score=204.47 Aligned_cols=275 Identities=21% Similarity=0.313 Sum_probs=221.5
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
..||.|++.|.+||+|+.||.|.|||+.|...-..+.+|..+|++++|+++|+.|+|++.|..|.+||+.. +.++..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~-gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK-GSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC-CCceeEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999999999998 55666665
Q ss_pred cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-------CCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 370 GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 370 ~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
...+|+...|+|...+.++++--+..-.+-++..++....-+ ....+..|.+.++++++|...|.+.+||..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 678999999999877776666555555555655432211111 112334588999999999999999999999
Q ss_pred CCeEEEEecCCC-CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC------CCCceEEEee--cCCCceEEEEEeCCCCe
Q 008393 443 TQACRLSLQGHT-KPIDSVCWDPSGELLASVSED-SVRVWTVGSG------SEGECVHELS--CNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 443 ~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~------~~~~~i~~~~--~~~~~i~~~~~sp~~~~ 512 (567)
+.+++..++-.. ..|..|.|+..|..|+.-+.| .||.|++..- ...+..+.+. .......+|+|+.+|.|
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY 263 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY 263 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence 999999888765 789999999999999999999 9999998631 1112112221 12345678999999999
Q ss_pred EEEEEcC-CeEEEEECCCCcEE-Eecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCY-QSLELWNMSENKTM-TLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~d-g~I~iwd~~~~~~~-~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.. ..+|||.-..|..+ .+.+.. .....+.|+|-...|++- ..|.|+||.
T Consensus 264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence 9988754 48999999999988 455555 567889999998888877 678999993
No 99
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.94 E-value=4.4e-24 Score=212.40 Aligned_cols=262 Identities=13% Similarity=0.115 Sum_probs=204.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
++++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+ +..+..+..+.. +..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-~~~ 77 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLAT-GEVIGTLPSGPD-PEL 77 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCC-CcEEEeccCCCC-ccE
Confidence 35788999999999999999999888876644 6789999999976 5667889999999987 555555554433 567
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCC-eEEEEECCCCeEEEEecCCC
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~ 454 (567)
++|+|+++.+++++..|+.|++||+.+.+.+..+.. ....+.|+|++..++++..++ .+.+||.++++....+.. .
T Consensus 78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~ 156 (300)
T TIGR03866 78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-D 156 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-C
Confidence 899999988877777899999999999888877763 357789999999988888764 577889998877665543 2
Q ss_pred CCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEE-EcCCeEEE
Q 008393 455 KPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVI-GCYQSLEL 524 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~-~~dg~I~i 524 (567)
..+.+++|++++.+|+.++ .+ .|++||++++ +.+..+..+ ......++|+|++++++++ +.++.|.+
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v 233 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV 233 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence 3457899999999886554 45 9999999876 333333211 1123467899999987665 45678999
Q ss_pred EECCCCcEEEeccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 525 WNMSENKTMTLTAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 525 wd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
||+.+++......+...+.+++|+|+|++|+++ +.+|.|++||
T Consensus 234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence 999988877544556689999999999999876 4689999997
No 100
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=2.7e-25 Score=223.44 Aligned_cols=273 Identities=18% Similarity=0.310 Sum_probs=227.5
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee--eeecccCccEEE-EEECC-CCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK--TNLEEHSSLITD-VRFSP-SMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~--~~l~~h~~~V~~-i~fsp-~~~~l~s~s~dg~ 352 (567)
++..+.+.+|...|..+++.++. .+++++.||++++|+-.....+ ..+.+|.+.|.+ ++|.+ ++-.|++|+.|++
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~ 82 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT 82 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence 45667899999999998877655 8899999999999997655443 456778888887 88886 4446999999999
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 429 (567)
|.+|.... ..++.++++|...|.++....++. +++|+.|.++++|-+.. +...+.+ .+..+..-|.. .+++
T Consensus 83 i~v~~~~~-~~P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vT 156 (745)
T KOG0301|consen 83 IIVFKLSQ-AEPLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVT 156 (745)
T ss_pred EEEEecCC-CCchhhhhccccceeeeecCCcCc--eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEe
Confidence 99999997 788999999999999999877754 55999999999997654 3333444 45566777775 9999
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
|+.|..|++|.- ++.+.+|.+|.+.|+.+++-+++. |++++.| .|++|++ ++ .++.++.+|...++++....
T Consensus 157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~ 229 (745)
T KOG0301|consen 157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMAL 229 (745)
T ss_pred ccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecC
Confidence 999999999987 778889999999999999998765 5567777 9999999 34 79999999999999999888
Q ss_pred CCCeEEEEEcCCeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 509 TYPSLLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++..+++++.|++++||+.. ++.....|.. .|+++.+-++|. |++|+.||.||||
T Consensus 230 ~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf 285 (745)
T KOG0301|consen 230 SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF 285 (745)
T ss_pred CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence 88899999999999999987 5554445555 799999888886 6678899999998
No 101
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=1.1e-25 Score=218.10 Aligned_cols=275 Identities=19% Similarity=0.301 Sum_probs=232.1
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC---Ceeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT---LKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~---~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.|.+-|.++.+|...++++||+ .|.|+|||+.. ...+..|. .....|+++.+.|||+.|++|++-.++.|||+.
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA 495 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA 495 (705)
T ss_pred ccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence 6888888999999999999997 68899999963 23344444 245679999999999999999999999999998
Q ss_pred CCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEEECCCe
Q 008393 360 NPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 360 ~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~ 435 (567)
.+...++ .+....-..+.++.+||.+ +.++|..||.|.|||+.+...++.|.+ +..++.++++|.+|.+++-|++
T Consensus 496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt 574 (705)
T KOG0639|consen 496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT 574 (705)
T ss_pred CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence 7544332 2333345577899999965 566888899999999999999999886 5689999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
|+.||+++++.+.... ....|.++.++|++.+|+.|-++ .|.|..... ...+.+..|+..|.++.|.+.|++++
T Consensus 575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~sk----p~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK----PEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCC----ccceeecccccEEEEEEecccCceee
Confidence 9999999987665433 45789999999999999999998 888877653 34556777899999999999999999
Q ss_pred EEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 515 VIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
+.+.|+.+..|...-|..+.-......|.++.++.|.+||+||+.|..-.||
T Consensus 650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence 9999999999999988887666777899999999999999999999877766
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=7.8e-26 Score=225.65 Aligned_cols=305 Identities=16% Similarity=0.229 Sum_probs=249.9
Q ss_pred CCCCCCCccceeccCCccc---eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEE
Q 008393 259 TDPRDAGGRGMDVSQGFSF---KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLIT 333 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~---~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~ 333 (567)
++++|+.+++|+......+ ..+..+..|...|..++...+|+.|++++.|-+|++|+...+ -++.++..|.+.|.
T Consensus 42 TgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVk 121 (735)
T KOG0308|consen 42 TGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVK 121 (735)
T ss_pred ecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchhe
Confidence 5678899999998765543 246789999999999999999999999999999999999876 67889999999999
Q ss_pred EEEE-CCCCCeEEEEeCCCcEEEEEcCCCCc---------eeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 334 DVRF-SPSMPRLATSSFDKTVRVWDADNPGY---------SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 334 ~i~f-sp~~~~l~s~s~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
|+++ .++...+|+|+.|+.|.+||+.+... ....+. ++...|++++.++.| .+|++|+..+.|++||.
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDp 200 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDP 200 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecc
Confidence 9999 78888999999999999999986321 122233 888999999999987 57779999999999999
Q ss_pred CCCeeeEEEeCC---eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEE
Q 008393 403 NNGSCTRVFKGG---TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVR 478 (567)
Q Consensus 403 ~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~ 478 (567)
++++.+..+.++ +..+..+.+|.++++++.||+|++||+...+++.++..|+..|+++..+|+-..+++|+.| .|.
T Consensus 201 rt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~ 280 (735)
T KOG0308|consen 201 RTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIY 280 (735)
T ss_pred ccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEE
Confidence 999988887765 5677899999999999999999999999999999999999999999999999999999999 999
Q ss_pred EEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEE------------------------
Q 008393 479 VWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMT------------------------ 534 (567)
Q Consensus 479 iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~------------------------ 534 (567)
.=|+++......+. ..+.++..+..+...+-+.+++.|+.|+-|..+-...+.
T Consensus 281 ~Tdl~n~~~~tlic---k~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~ 357 (735)
T KOG0308|consen 281 RTDLRNPAKSTLIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPD 357 (735)
T ss_pred ecccCCchhheEee---cCCCchhhhhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCc
Confidence 99998753322222 345667777777666667888999999999654321110
Q ss_pred -eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 535 -LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 535 -~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.......|...++-.|.++++|-..+|.+.+||
T Consensus 358 ~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 358 SVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD 391 (735)
T ss_pred eeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence 011112344445556788999999999999997
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.2e-24 Score=195.66 Aligned_cols=231 Identities=21% Similarity=0.299 Sum_probs=207.4
Q ss_pred eecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
.+.+|..+++.|.|+.+|.+|++++.|.++.||-..+ ++.+-++.+|.+.|+|++...+.+.++ +|+.|.++++||++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-GerlGty~GHtGavW~~Did~~s~~li-TGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-GERLGTYDGHTGAVWCCDIDWDSKHLI-TGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecC-CceeeeecCCCceEEEEEecCCcceee-eccccceeEEEEcC
Confidence 4678999999999999999999999999999999877 788999999999999999998876655 99999999999999
Q ss_pred CCeeeEEEeC--CeeEEEEecCCCEEEEEECC-----CeEEEEECC-------CCeEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 404 NGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-----NVVSILDAE-------TQACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 404 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~-------~~~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
+|+++..++. .+..+.|+.+++.+++...+ +.|.++|++ ..++...+..+...++.+-|.|-+++|
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i 162 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI 162 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence 9999988875 56778899998888887763 689999998 456788888899999999999999999
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEe
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVS 548 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~s 548 (567)
++|.++ .|.+||++++. +.+.....|...|+.+.+++|..++++++.|.+-++||+.+..++.......+|++.+++
T Consensus 163 i~Ghe~G~is~~da~~g~--~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aais 240 (327)
T KOG0643|consen 163 IAGHEDGSISIYDARTGK--ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAIS 240 (327)
T ss_pred EEecCCCcEEEEEcccCc--eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecc
Confidence 999999 99999999874 456666778889999999999999999999999999999999998777788899999999
Q ss_pred cCCCEEEEEE
Q 008393 549 TETGYVASAS 558 (567)
Q Consensus 549 pdg~~l~s~s 558 (567)
|....++.|+
T Consensus 241 P~~d~VilgG 250 (327)
T KOG0643|consen 241 PLLDHVILGG 250 (327)
T ss_pred cccceEEecC
Confidence 9888777665
No 104
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.94 E-value=3.1e-25 Score=213.63 Aligned_cols=246 Identities=18% Similarity=0.380 Sum_probs=204.4
Q ss_pred eccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC----------eeeeeecccCccEEEEEECCCCC-eEEEEeCC
Q 008393 283 VRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL----------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFD 350 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~----------~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~d 350 (567)
.-.|.+.|+.+.+-|.. .++|+++..+.|.|||..+. .+-.+|.+|...-+.+.|++... +|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999955 67788889999999998642 22337889999889999998544 89999999
Q ss_pred CcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCC
Q 008393 351 KTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL 424 (567)
Q Consensus 351 g~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 424 (567)
+.|++||+..... ....+.+|...|..++|++....+|++++.|+.+.|||++++.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~------------------ 261 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT------------------ 261 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC------------------
Confidence 9999999975333 3567889999999999999999999999999999999988531
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
.++.....+|...|+|++|+| ++.+||+|+.| +|++||+++.. .+++.+.+|...|.
T Consensus 262 -------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 262 -------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGHEDEVF 320 (422)
T ss_pred -------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCCCcceE
Confidence 122235567999999999999 66789999989 99999999764 58999999999999
Q ss_pred EEEEeCCC-CeEEEEEcCCeEEEEECCCC-c--------------EEEeccccCCeeEEEEecCCCE-EEEEECCCcEEE
Q 008393 503 SCVFHPTY-PSLLVIGCYQSLELWNMSEN-K--------------TMTLTAHEGLIAALAVSTETGY-VASASHDKFVKL 565 (567)
Q Consensus 503 ~~~~sp~~-~~l~~~~~dg~I~iwd~~~~-~--------------~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~i 565 (567)
.+.|+|.. ..|++++.|+.+.|||+..- + .+.-.+|...|..+.|+|+..+ |+++++|+.+.|
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqI 400 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQI 400 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEE
Confidence 99999976 46677788999999999642 1 1355689999999999998875 778899999999
Q ss_pred cC
Q 008393 566 WK 567 (567)
Q Consensus 566 Wd 567 (567)
|+
T Consensus 401 W~ 402 (422)
T KOG0264|consen 401 WQ 402 (422)
T ss_pred ee
Confidence 96
No 105
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-24 Score=198.50 Aligned_cols=229 Identities=17% Similarity=0.300 Sum_probs=189.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~ 358 (567)
+....|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+... .|+||+.|++|+.||.
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~ 144 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDT 144 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeeccc
Confidence 556789999999999999999999999999999999998 5677888999999999988666 8999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-----EEeCCeeEEEEecCCCEEEEEECC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-----VFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
+. ..++.++. ....|++++... .+++.+..++.|.+|+++++.... .++-.+.+++...+...++.|+-+
T Consensus 145 R~-~~pv~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 145 RS-SNPVATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred CC-CCeeeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 97 55555554 567788887753 366678889999999998764332 244567888888888888999999
Q ss_pred CeEEEEECCCC--eEEEEecCCCC---------CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCce
Q 008393 434 NVVSILDAETQ--ACRLSLQGHTK---------PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 434 g~I~i~d~~~~--~~~~~~~~h~~---------~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
|.+.|..+..+ +.-+.|+.|.. .|++|+|+|....|++++.| ++.+||-... ..+.....+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCcc
Confidence 99999988776 55566666652 47889999988889998888 9999998554 5677778889999
Q ss_pred EEEEEeCCCCeEEEEEc
Q 008393 502 HSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~ 518 (567)
++|.|+.+|.+++.+..
T Consensus 297 tcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 297 TCCSFNRNGSIFAYALG 313 (347)
T ss_pred ceeEecCCCCEEEEEee
Confidence 99999999997776543
No 106
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.7e-25 Score=222.30 Aligned_cols=244 Identities=24% Similarity=0.337 Sum_probs=212.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC---CCCeEEEEeCCCcEEEEEcCC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP---SMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp---~~~~l~s~s~dg~I~iwd~~~ 360 (567)
-.....|.|++++|+|++||+|...|.|+||++.+.+....++.|...|.|+.|+. ..++||+++.|..|.|||+..
T Consensus 456 ~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r 535 (1080)
T KOG1408|consen 456 CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR 535 (1080)
T ss_pred cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc
Confidence 34567799999999999999999999999999999999999999999999999986 356899999999999999998
Q ss_pred CCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEE--------eCCeeEEEEecCCCEEEEEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVF--------KGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~ 431 (567)
+-.++.++.+|...|+++.|.-.| +.-+++|+.|..|.+--.........| +.....+...|..+++++++
T Consensus 536 ny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c 615 (1080)
T KOG1408|consen 536 NYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC 615 (1080)
T ss_pred ccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe
Confidence 777889999999999999997665 334459999988765443322211222 23456788999999999999
Q ss_pred CCCeEEEEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 432 AENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.|..|+|||+..++..+.|++ |++....+..+|.|.||++.+.| ++.++|+.++ +|+..+.+|...|+.+.|.
T Consensus 616 QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 616 QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeec
Confidence 999999999999999999986 66777889999999999999999 9999999887 8999999999999999999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCC
Q 008393 508 PTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+|.++|++.+.||.|.||.+...
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred ccchhheeecCCceEEEEECchh
Confidence 99999999999999999988653
No 107
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.2e-24 Score=207.69 Aligned_cols=263 Identities=19% Similarity=0.243 Sum_probs=225.5
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
+++.|...-++|...+ ..+..|+||+..|+.+.|+++...+++++.|..|+||..........+..|..+|+.+..+
T Consensus 236 TGG~d~~av~~d~~s~---q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h 312 (506)
T KOG0289|consen 236 TGGEDKTAVLFDKPSN---QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLH 312 (506)
T ss_pred ecCCCCceEEEecchh---hhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeec
Confidence 4556656666665554 5678899999999999999999999999999999999999888888899999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--- 413 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--- 413 (567)
|.|.||++++.||+..+.|+++ +..+..... ..-.+++.+|+||| .+|.+|..|+.|+|||+.+...+..|.+
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~-g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISS-GSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccC-CcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 9999999999999999999998 444443332 23458999999997 4777999999999999999998888765
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC-CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
++..+.|+.+|-++++++.|+.|++||++..+...++... ...|.+++|+..|.+|+.++.+ .|++++-.+ +...++
T Consensus 391 ~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~ 469 (506)
T KOG0289|consen 391 PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEI 469 (506)
T ss_pred ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceee
Confidence 5788899999999999999999999999998877766543 3479999999999999999888 888887554 456788
Q ss_pred EEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
..+..|.+..+++.|.....++++++.|..++++.+
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 888888888999999999999999999999888864
No 108
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=3.7e-23 Score=200.87 Aligned_cols=296 Identities=19% Similarity=0.309 Sum_probs=234.6
Q ss_pred ccceeccCCccceeeeeeccCC-CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE
Q 008393 266 GRGMDVSQGFSFKEANSVRAST-SKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
..-|+...+.-++....+..+. .-|.|++|.++|. ++||..+|.|.||+..+.+..+....|.+.|.+++...+|.+|
T Consensus 224 ~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll 302 (626)
T KOG2106|consen 224 LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL 302 (626)
T ss_pred EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe
Confidence 4568877777777777777654 5699999999995 5689999999999999988888888999999999999999555
Q ss_pred EEEeCCCcEEEEEcCCCC----------ce-----------------------------eEEeccCCCcEEEEEEcCCCC
Q 008393 345 ATSSFDKTVRVWDADNPG----------YS-----------------------------LRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~----------~~-----------------------------~~~~~~h~~~V~~l~~~p~~~ 385 (567)
+|+.|..|..||-.-.. .. .....+|......++.+|+.+
T Consensus 303 -SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 303 -SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred -ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 49999999999832100 00 012236888899999999966
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
.+ ++|+.|+.+++|+-......+.+..+..++.|+|.+ .++++...|...+.|.++...+..-.. ..++++++|+|+
T Consensus 382 q~-~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~ 458 (626)
T KOG2106|consen 382 QL-LTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD 458 (626)
T ss_pred he-eeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC
Confidence 54 599999999999944444556677889999999998 999999999999999999766655554 889999999999
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-------------
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK------------- 531 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------------- 531 (567)
|.+||.|+.| .|+||.+..... +....-..+..+|+.+.|++|+++|.+-+.|-.|..|.....+
T Consensus 459 G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~ 537 (626)
T KOG2106|consen 459 GAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATY 537 (626)
T ss_pred CCEEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeee
Confidence 9999999999 999999975432 3333334455899999999999999999999999999433221
Q ss_pred ---------------------------------------------------EEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 532 ---------------------------------------------------TMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 532 ---------------------------------------------------~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
...+.+|.+.|++++|..+...|++.+.|
T Consensus 538 ~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D 617 (626)
T KOG2106|consen 538 TCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKD 617 (626)
T ss_pred EEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCC
Confidence 12455678888888888777777777788
Q ss_pred CcEEEcC
Q 008393 561 KFVKLWK 567 (567)
Q Consensus 561 g~I~iWd 567 (567)
.+|..|+
T Consensus 618 ~Si~qW~ 624 (626)
T KOG2106|consen 618 TSIMQWR 624 (626)
T ss_pred ceEEEEE
Confidence 8888885
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-23 Score=214.72 Aligned_cols=359 Identities=16% Similarity=0.231 Sum_probs=257.4
Q ss_pred CCCcCeEEEecCCCccccCCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCC---CCCCCCCccceeccCC-cc-
Q 008393 202 TTSKPLMMFGTDGAGTLTSPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDD---TDPRDAGGRGMDVSQG-FS- 276 (567)
Q Consensus 202 ~~~~~~~~~~~dg~~~~~~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~d~~~~~~~~~~~-~~- 276 (567)
..++-+.+...+....+++..+.++-.+-|..+.+...... ..|...+.-++ ....+....+|+...+ .+
T Consensus 74 ~lp~~I~alas~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~-----a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~ 148 (910)
T KOG1539|consen 74 PLPDKITALASDKDYVYVASGNKIYAYARGKHIRHTTLLHG-----AKVHLLLPFGEHLIAVDISNILFVWKTSSIQEEL 148 (910)
T ss_pred CCCCceEEEEecCceEEEecCcEEEEEEccceEEEEecccc-----ceEEEEeeecceEEEEEccCcEEEEEeccccccc
Confidence 44566677777888877777776666655532222221111 11111111111 1123345677887764 22
Q ss_pred ceeeeeeccCCCCeEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 277 FKEANSVRASTSKVICCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
......++.....|+++. +|. -+.++.|+.+|.+.+|++.+++.++++.++...|+++.=+|--..++.|..+|+|.
T Consensus 149 ~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 149 YLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI 227 (910)
T ss_pred cccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE
Confidence 112222333233366653 453 35778999999999999999999999999999999999999888999999999999
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~ 430 (567)
|+++.. .+.+..++...+.|++++|.-||+.++++++..|.+.+||++..+.+.... +.+....|.+....++++
T Consensus 228 ifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta 306 (910)
T KOG1539|consen 228 IFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTA 306 (910)
T ss_pred EEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeec
Confidence 999998 777888874469999999999999999999999999999999988776654 345666677776777777
Q ss_pred ECCCeEEEE--ECCCC--eEEEEecCC-----------------------------------------------------
Q 008393 431 AAENVVSIL--DAETQ--ACRLSLQGH----------------------------------------------------- 453 (567)
Q Consensus 431 ~~dg~I~i~--d~~~~--~~~~~~~~h----------------------------------------------------- 453 (567)
+.|+.+++| |...+ +.++.-.||
T Consensus 307 ~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~ 386 (910)
T KOG1539|consen 307 GADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVN 386 (910)
T ss_pred cCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccccc
Confidence 777655444 41111 000000111
Q ss_pred -------------------------------------------------------C------CCeeEEEEcCCCCEEEEE
Q 008393 454 -------------------------------------------------------T------KPIDSVCWDPSGELLASV 472 (567)
Q Consensus 454 -------------------------------------------------------~------~~V~~l~~sp~g~~l~s~ 472 (567)
. ..+++++.++.|++.+.|
T Consensus 387 ~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG 466 (910)
T KOG1539|consen 387 VFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIG 466 (910)
T ss_pred ccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEe
Confidence 1 346677778888888887
Q ss_pred eCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--------------------
Q 008393 473 SED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-------------------- 531 (567)
Q Consensus 473 s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-------------------- 531 (567)
... .|.+|++.+|-.......-..|..+|+.++...-++.+++++.+|-+.+||+.+..
T Consensus 467 ~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s 546 (910)
T KOG1539|consen 467 YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVS 546 (910)
T ss_pred ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehh
Confidence 776 88888888774333333336789999999999999999999999999999987754
Q ss_pred ---------------------E-EEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ---------------------T-MTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ---------------------~-~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ..+.+|.+.|++++|||||++|++++.|++|++||
T Consensus 547 ~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 547 DLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 0 14567999999999999999999999999999998
No 110
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.3e-25 Score=209.81 Aligned_cols=261 Identities=17% Similarity=0.256 Sum_probs=220.6
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
.++.|+.+++|+.... .+...++.|.+.|..|+++. ..+++++.|++|+.|.++- .++.++.+. ..+..|.-+
T Consensus 84 SGs~DG~VkiWnlsqR---~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg~-s~~~gIdh~ 156 (433)
T KOG0268|consen 84 SGSCDGEVKIWNLSQR---ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILGK-SVYLGIDHH 156 (433)
T ss_pred ccccCceEEEEehhhh---hhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeecc-ccccccccc
Confidence 5778999999999876 67889999999999999988 6888999999999998865 455555543 346677777
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCee
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTA 416 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~ 416 (567)
..+..++||+.+ |.|||... ..++..+.-....|.++.|+|....+|++|+.|+.|.+||++.+..++.. +...+
T Consensus 157 ~~~~~FaTcGe~--i~IWD~~R-~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN 233 (433)
T KOG0268|consen 157 RKNSVFATCGEQ--IDIWDEQR-DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN 233 (433)
T ss_pred cccccccccCce--eeeccccc-CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc
Confidence 777889999876 99999986 66778887778889999999999999999999999999999999988654 45678
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.++|+|..-.++++..|..++.||++.. +++....+|.+.|.++.|+|.|+-+++|+.| +|+||.++.+......++-
T Consensus 234 ~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk 313 (433)
T KOG0268|consen 234 TICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK 313 (433)
T ss_pred ceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh
Confidence 9999998788888899999999999985 6778889999999999999999999999999 9999999876443332221
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
. -..|.++.|+-|.+++++|+.|+.|++|.....+
T Consensus 314 R--Mq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 314 R--MQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred h--hheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence 1 2348899999999999999999999999876543
No 111
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.2e-25 Score=196.29 Aligned_cols=246 Identities=22% Similarity=0.310 Sum_probs=203.2
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEEc
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd~ 358 (567)
..|.+.|..+...--|++|||++.|++|+|+.+.+. +.+.+|.+|.++|+.++|.. -|.+||++++||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 478999999999999999999999999999998753 57889999999999999965 7899999999999999999
Q ss_pred CCCCc-eeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCC------eeeEEEeCCeeEEEEecC---C---
Q 008393 359 DNPGY-SLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNG------SCTRVFKGGTAQMRFQPH---L--- 424 (567)
Q Consensus 359 ~~~~~-~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~------~~~~~~~~~~~~~~~~~~---~--- 424 (567)
+++.. ....+..|...|++++|.|.+- .+|+.++.||.|.|.+.+.. +.......+++.++|.|. +
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 87422 2345678999999999998754 35667888999999998765 223334567888888886 3
Q ss_pred --------CEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCC----CEEEEEeCC-eEEEEeCCCCCCCc
Q 008393 425 --------GRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSG----ELLASVSED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 425 --------~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g----~~l~s~s~d-~I~iwd~~~~~~~~ 489 (567)
.+|++++.|+.|+||+...+ +...+|.+|.+.|+.++|.|.- .+||+++.| +|.||..+.....-
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~w 247 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPW 247 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcc
Confidence 56999999999999998875 4445688999999999999954 489999999 99999987433333
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
....+......+..+.|+..|+.|++++.|+.|++|.-..
T Consensus 248 k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 248 KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 4444555667899999999999999999999999997553
No 112
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=207.41 Aligned_cols=282 Identities=18% Similarity=0.271 Sum_probs=233.6
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~ 361 (567)
...+.|+|+.|+|...+|++|+.|+.++||.++ +...+..+.-...+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 446899999999999999999999999999886 3456667777788999999999999 8999999999999999873
Q ss_pred Cc-eeEEeccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEE
Q 008393 362 GY-SLRTFMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 362 ~~-~~~~~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
+. .+....++. ..+.....+++++ +|+..+..|.|.+....+++.+..++ +.+..++|+.++..+++++.+|.|+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEE
Confidence 32 222333443 3566788899987 55578889999999999999987765 5678899999999999999999999
Q ss_pred EEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC-eEEEEeCCC---CCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 438 ILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED-SVRVWTVGS---GSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~---~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+||++...+++++....+ .-+++|.+.++.|||+|+.. .|.|||..+ ...++.+..+..-...|+++.|+++...
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qi 449 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQI 449 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhh
Confidence 999999999998875322 34678888999999999998 999999754 3456777777777888999999999998
Q ss_pred EEEEEcC--CeEEEEECCCCcEE-Ee---ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCY--QSLELWNMSENKTM-TL---TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~d--g~I~iwd~~~~~~~-~~---~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|+.++.. ..+++--+.....+ .+ ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus 450 LAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k 510 (514)
T KOG2055|consen 450 LAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK 510 (514)
T ss_pred hhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence 8887654 58899888877666 22 23345799999999999999999999999995
No 113
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=2.3e-24 Score=207.49 Aligned_cols=231 Identities=23% Similarity=0.351 Sum_probs=196.9
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
++|...|.+++.++||+|||+|+.|..|.||+..+.+.+..+.+|.+.|.+++|-.....|++++.|++|++|+++. ..
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-~s 277 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-LS 277 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-hH
Confidence 59999999999999999999999999999999999999999999999999999999888999999999999999997 66
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
.+.++.+|.+.|..|....- ..++.+|+.|+++++|++.....+.... +.+.+++|..+ ..+++|+.+|.|.+|++
T Consensus 278 ~vetlyGHqd~v~~IdaL~r-eR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSR-ERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSL 355 (479)
T ss_pred HHHHHhCCccceeeechhcc-cceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeee
Confidence 77889999999999998766 4577678899999999995544332222 24567777665 88999999999999999
Q ss_pred CCCeEEEEecC-C-----------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-CCceEEEeecCCCceEEEEEe
Q 008393 442 ETQACRLSLQG-H-----------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 442 ~~~~~~~~~~~-h-----------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~s 507 (567)
-+.+++++... | ..+|++++..|..+++++|+.+ .|++|-+..+- ....+..+. -.+.|+.++|+
T Consensus 356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~ 434 (479)
T KOG0299|consen 356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFS 434 (479)
T ss_pred cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEc
Confidence 99988877642 2 2389999999999999999999 99999998762 345555655 56789999999
Q ss_pred CCCCeEEEEEc
Q 008393 508 PTYPSLLVIGC 518 (567)
Q Consensus 508 p~~~~l~~~~~ 518 (567)
++|+.|++|..
T Consensus 435 ~sgk~ivagiG 445 (479)
T KOG0299|consen 435 NSGKRIVAGIG 445 (479)
T ss_pred cCCCEEEEecc
Confidence 99997777743
No 114
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-24 Score=217.03 Aligned_cols=255 Identities=20% Similarity=0.368 Sum_probs=220.4
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEE-EEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVIC-CHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR 336 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~ 336 (567)
..++|++.++|+-. +..+.+...+.+|.+-|.+ ++|-+ ++-.|++|+.|+.|.+|......+..+|++|...|.++.
T Consensus 30 s~sRd~t~~vw~~~-~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls 108 (745)
T KOG0301|consen 30 SGSRDGTVKVWAKK-GKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLS 108 (745)
T ss_pred ecCCCCceeeeecc-CcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeee
Confidence 35678888999764 3345566778889998888 88885 555799999999999999999999999999999999999
Q ss_pred ECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee
Q 008393 337 FSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416 (567)
Q Consensus 337 fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 416 (567)
...++. |++|+.|.+++||.... +...+.+|...|+++.+.|++ .++||+.|.+|++|.- ++++++|.++..
T Consensus 109 ~~~~~~-~iSgSWD~TakvW~~~~---l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~--~~~l~tf~gHtD 180 (745)
T KOG0301|consen 109 IGEDGT-LISGSWDSTAKVWRIGE---LVYSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKG--GTLLKTFSGHTD 180 (745)
T ss_pred cCCcCc-eEecccccceEEecchh---hhcccCCcchheeeeeecCCC--cEEeccCcceeeeccC--Cchhhhhccchh
Confidence 888876 99999999999999854 456689999999999999986 4559999999999986 778888888765
Q ss_pred EE---EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 417 QM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~---~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
++ ++-++ ..+++++.||.|++|++ +++++..+.+|...|.++....++..++++++| +++||+.. .|..
T Consensus 181 ~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-----e~~q 253 (745)
T KOG0301|consen 181 CVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-----ECVQ 253 (745)
T ss_pred heeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-----ceEE
Confidence 54 45554 78999999999999999 899999999999999999988888999999999 99999975 6778
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.+......++++.+-++|. |++|++||.|+||.....
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 8887788899999988887 999999999999977643
No 115
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=9.9e-25 Score=199.90 Aligned_cols=247 Identities=14% Similarity=0.233 Sum_probs=206.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec--ccCccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE--EHSSLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~--~h~~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
..+++|-.|.+.|+++.|+|....|++|+.|++|++||+..-...+.++ .....|.+|.|+|.|.+|+.|....++++
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rl 242 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRL 242 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeE
Confidence 4678899999999999999999999999999999999998654444433 35668999999999999999999999999
Q ss_pred EEcCCCCceeEE---eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEE
Q 008393 356 WDADNPGYSLRT---FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRY 427 (567)
Q Consensus 356 wd~~~~~~~~~~---~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l 427 (567)
||+.+ ..+... -..|.+.|+++.+++.++ +.++++.||.|++||--+++|+.++.. .+....|..++.++
T Consensus 243 Ydv~T-~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 243 YDVNT-YQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred Eeccc-eeEeeecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 99998 443332 236899999999999976 566999999999999999999988753 46677899999999
Q ss_pred EEEECCCeEEEEECCCCeEEEEecCCC--C---CeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 428 LAAAAENVVSILDAETQACRLSLQGHT--K---PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~~~~~~~~~~h~--~---~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
++.+.|..+++|++.+++++..+.+-. + --+...|+....|++.-.+. .+.-||.++...... .-.+|.+.
T Consensus 321 LsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l--~slgHn~a 398 (430)
T KOG0640|consen 321 LSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL--LSLGHNGA 398 (430)
T ss_pred eecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh--cccCCCCC
Confidence 999999999999999999999887641 1 12345688888888887766 799999988743222 23468899
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
+..+.-+|.+..+++++.|-.+++|--+
T Consensus 399 ~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 399 VRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceEEEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999999643
No 116
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.3e-24 Score=207.95 Aligned_cols=257 Identities=19% Similarity=0.215 Sum_probs=208.8
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
.+.+|.+-+...+. ..---.++|.|++-+|+|.+|+.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|+.+|
T Consensus 62 ~l~vw~i~k~~~~~---q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~i 138 (476)
T KOG0646|consen 62 LLHVWEILKKDQVV---QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHI 138 (476)
T ss_pred cccccccCchhhhh---hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEE
Confidence 34566665543332 111236789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcEEEEEcCC--------CCceeEEeccCCCcEEEEEEcCCC-CeEEEEEeCCCcEEEEECCCCeeeEEEe--C
Q 008393 345 ATSSFDKTVRVWDADN--------PGYSLRTFMGHSASVMSLDFHPNK-DDLICSCDGDGEIRYWSINNGSCTRVFK--G 413 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~~p~~-~~li~s~~~dg~I~iwd~~~~~~~~~~~--~ 413 (567)
++|+.||.|.+|.+.. .-.++..+..|.-+|+++...+.+ +..++|.+.|.++++||+..+..+..+. .
T Consensus 139 iTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~ 218 (476)
T KOG0646|consen 139 ITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS 218 (476)
T ss_pred EecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC
Confidence 9999999999998742 235678899999999999887652 3456699999999999999999887654 5
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCC----------------eEEEEecCCCC--CeeEEEEcCCCCEEEEEeCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQ----------------ACRLSLQGHTK--PIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~----------------~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s~d 475 (567)
.+.+++++|.+..+++|+.+|.|.+.++.+. ..+..+.+|.+ .|+|++++-||.+|++|+.|
T Consensus 219 si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~d 298 (476)
T KOG0646|consen 219 SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDED 298 (476)
T ss_pred cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCC
Confidence 6789999999999999999999999887542 34556788988 99999999999999999999
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEEC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNM 527 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~ 527 (567)
.|+|||+.+. ++++++....++|+.+.+.|-.+.++.+.. ...+-+|++
T Consensus 299 g~VcvWdi~S~---Q~iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 299 GKVCVWDIYSK---QCIRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred CCEEEEecchH---HHHHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 9999999765 788877777888999998775544444322 224444444
No 117
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.1e-22 Score=200.23 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=204.2
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
.|..+++|+..++ +.+..+..|.. +.+++|+|+|+.+ ++++.++.|++||..+++....+..+.. +..++|+|+
T Consensus 9 ~d~~v~~~d~~t~---~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~ 83 (300)
T TIGR03866 9 KDNTISVIDTATL---EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPN 83 (300)
T ss_pred CCCEEEEEECCCC---ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCC
Confidence 4557788888766 34555555543 6789999999976 5667889999999999988877765544 567899999
Q ss_pred CCeEEEE-eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-CcEEEEECCCCeeeEEEe--CCee
Q 008393 341 MPRLATS-SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-GEIRYWSINNGSCTRVFK--GGTA 416 (567)
Q Consensus 341 ~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-g~I~iwd~~~~~~~~~~~--~~~~ 416 (567)
++.++++ +.|+.|++||+.+ ...+..+. +...+.+++|+|++..++ ++..+ ..+.+||..+++....+. ....
T Consensus 84 g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 160 (300)
T TIGR03866 84 GKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVV-NTSETTNMAHFIDTKTYEIVDNVLVDQRPR 160 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEE-EEecCCCeEEEEeCCCCeEEEEEEcCCCcc
Confidence 9977655 5689999999987 45555554 234578899999987666 45544 467788999887765443 3456
Q ss_pred EEEEecCCCEEEEEE-CCCeEEEEECCCCeEEEEecCCC-----C--CeeEEEEcCCCCEEEEE-eCC-eEEEEeCCCCC
Q 008393 417 QMRFQPHLGRYLAAA-AENVVSILDAETQACRLSLQGHT-----K--PIDSVCWDPSGELLASV-SED-SVRVWTVGSGS 486 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~-~dg~I~i~d~~~~~~~~~~~~h~-----~--~V~~l~~sp~g~~l~s~-s~d-~I~iwd~~~~~ 486 (567)
.+.|++++..+++++ .++.|.+||+++++.+..+..+. . ....++|+|++++++.+ +.+ .|.+||+.++
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~- 239 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY- 239 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 788999998887665 48999999999998776654321 1 23468899999986554 334 8999999765
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
+.+..+. +...+.+++|+|++.+|+++. .++.|.+||+.+++.+.........+.++++|
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~ 300 (300)
T TIGR03866 240 --EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVVRP 300 (300)
T ss_pred --cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEeCC
Confidence 3333332 345788999999999998874 58999999999999873334456678888765
No 118
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=9.1e-25 Score=194.17 Aligned_cols=241 Identities=24% Similarity=0.424 Sum_probs=199.8
Q ss_pred cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEE-cCCCCeEEEEEeCCCcEEEEEC
Q 008393 326 EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDF-HPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~-~p~~~~li~s~~~dg~I~iwd~ 402 (567)
..|.+.|.++...--|++|+|++.|++|+|+.+++.+ ..+.++.+|.++|..++| +|.-..+|++|+.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 4688889998888889999999999999999999866 578899999999999999 5665678999999999999999
Q ss_pred CCCeeeEE-----EeCCeeEEEEecCC--CEEEEEECCCeEEEEECCCC---eEEEEecCCCCCeeEEEEcCC---C---
Q 008393 403 NNGSCTRV-----FKGGTAQMRFQPHL--GRYLAAAAENVVSILDAETQ---ACRLSLQGHTKPIDSVCWDPS---G--- 466 (567)
Q Consensus 403 ~~~~~~~~-----~~~~~~~~~~~~~~--~~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~---g--- 466 (567)
.++...+. +...+++++|.|.+ -.|++++.||.|.|++.+.. ........|.-.|++++|.|. |
T Consensus 88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 98864433 34567888888865 45677888999999987654 333455679999999999985 5
Q ss_pred --------CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC----CeEEEEEcCCeEEEEECCCC---
Q 008393 467 --------ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY----PSLLVIGCYQSLELWNMSEN--- 530 (567)
Q Consensus 467 --------~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~----~~l~~~~~dg~I~iwd~~~~--- 530 (567)
+.|++|+.| .|+||+..++ ....-..+.+|...++.++|.|.- .+|++++.||+|.||.....
T Consensus 168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~ 246 (299)
T KOG1332|consen 168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP 246 (299)
T ss_pred ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence 569999999 9999999876 334445689999999999999964 47999999999999987633
Q ss_pred -cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 -KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 -~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+...+......+..+.||..|++|+.++.|+.|.+|+
T Consensus 247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 1123445667899999999999999999999999995
No 119
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=3.2e-24 Score=212.20 Aligned_cols=288 Identities=20% Similarity=0.240 Sum_probs=230.6
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDK 351 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg 351 (567)
.|+..+...++||++.|.|+...|.|.+||+|+.||+|+||.+.+|+++.++.- .+.|.||+|+|.+. .||++-.+.
T Consensus 387 PFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred CCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCc
Confidence 456667788999999999999999999999999999999999999999998873 44799999999765 344443332
Q ss_pred cEEEEE---------------------------------cCC---CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC--
Q 008393 352 TVRVWD---------------------------------ADN---PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-- 393 (567)
Q Consensus 352 ~I~iwd---------------------------------~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-- 393 (567)
+.|-+ -.. ...-++....|...|..+.|+..|++|..++..
T Consensus 466 -~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 466 -VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred -eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 33332 211 011133444688999999999999987765543
Q ss_pred CCcEEEEECCCCeeeEE---EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 394 DGEIRYWSINNGSCTRV---FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
...|.|+++.......- .++.+.++.|+|...++++++ ...|+|||+...+.+.++......|..++.+|.|.-|+
T Consensus 545 ~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli 623 (733)
T KOG0650|consen 545 NKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLI 623 (733)
T ss_pred cceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEE
Confidence 35689999987665443 457788999999977777665 57899999999888888887888999999999999999
Q ss_pred EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE------CCCCc-EE---Eecccc
Q 008393 471 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN------MSENK-TM---TLTAHE 539 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd------~~~~~-~~---~~~~h~ 539 (567)
.++.| .+..||+.-.. +....+..|...++.++|++...++++++.||++.||- +-.+. ++ .+.+|.
T Consensus 624 ~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~ 701 (733)
T KOG0650|consen 624 LGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHE 701 (733)
T ss_pred EecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCce
Confidence 99999 99999996442 56778888999999999999999999999999988873 22222 22 567787
Q ss_pred CC----eeEEEEecCCCEEEEEECCCcEEEc
Q 008393 540 GL----IAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 540 ~~----V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.. |..+.|+|...+|++++.||+|++|
T Consensus 702 ~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 702 KTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eecccceEeecccCCCceEEecCCCceEEee
Confidence 65 8899999999999999999999999
No 120
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-23 Score=192.24 Aligned_cols=255 Identities=20% Similarity=0.324 Sum_probs=198.1
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC----CCeeeeeecccCccEEEEEECC--CCCeEEEEeCCCcEEEEE
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSP--SMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~----~~~~~~~l~~h~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd 357 (567)
.+|.+-|.|+.|...|+.+|+|+.|++|+|||.+ +..+....+.|.+.|..|.|.+ -|..+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 4788999999999999999999999999999964 4466777889999999999965 488999999999999997
Q ss_pred cCCC--------CceeEEeccCCCcEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE
Q 008393 358 ADNP--------GYSLRTFMGHSASVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 358 ~~~~--------~~~~~~~~~h~~~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~ 428 (567)
-... -....++......|+++.|.|... ..+++++.||.||||+......+...
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W----------------- 152 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQW----------------- 152 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccc-----------------
Confidence 6321 123456667788999999998643 35678899999999987654322221
Q ss_pred EEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCC---CCEEEEEeCC------eEEEEeCCCCC-CCceEEEeec
Q 008393 429 AAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPS---GELLASVSED------SVRVWTVGSGS-EGECVHELSC 496 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~---g~~l~s~s~d------~I~iwd~~~~~-~~~~i~~~~~ 496 (567)
.+... ..+.....+..+..|+.|++. ..+||.|+.+ .++||...... ....+.++..
T Consensus 153 -----------~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d 221 (361)
T KOG2445|consen 153 -----------TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD 221 (361)
T ss_pred -----------hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence 11100 000011135567788999874 4588888877 69999886553 5667888899
Q ss_pred CCCceEEEEEeCC----CCeEEEEEcCCeEEEEECCCCc--------------------EE-EeccccCCeeEEEEecCC
Q 008393 497 NGNKFHSCVFHPT----YPSLLVIGCYQSLELWNMSENK--------------------TM-TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 497 ~~~~i~~~~~sp~----~~~l~~~~~dg~I~iwd~~~~~--------------------~~-~~~~h~~~V~~l~~spdg 551 (567)
+..+|+.++|.|+ ...|++++.|| |+||.+.... .+ .+..|.+.|..+.|+-.|
T Consensus 222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 9999999999995 45788899999 9999987411 11 467899999999999999
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|++.|.||+||+|+
T Consensus 301 tiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 301 TILSSTGDDGCVRLWK 316 (361)
T ss_pred eEEeecCCCceeeehh
Confidence 9999999999999996
No 121
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=9.4e-26 Score=227.48 Aligned_cols=237 Identities=27% Similarity=0.477 Sum_probs=211.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|...|.+|.|++...+|+.|+.+|+|++||++
T Consensus 21 ~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 21 TREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred chhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 35567899999999998888999999999999999999888888899999999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
. .+.++++.+|...+.++.|+|-+.+ +++|+.|+.+++||++...|.+
T Consensus 101 e-Ak~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~------------------------------ 148 (825)
T KOG0267|consen 101 E-AKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSH------------------------------ 148 (825)
T ss_pred h-hhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCcee------------------------------
Confidence 7 7888999999999999999999764 4688889999998887554443
Q ss_pred ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 440 DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 440 d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.+.+|...|.++.|+|+|++++.+++| .++|||+..| +.+.+|..|...+..+.|+|..-.+..|+.
T Consensus 149 ---------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 149 ---------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred ---------eecCCcceeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCC
Confidence 555688889999999999999999999 9999999776 788899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
|++|++||+++.+.+ ........|.++.|+|+++.+++|..+
T Consensus 217 d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999988877 444557789999999999988887654
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.92 E-value=4e-22 Score=193.80 Aligned_cols=291 Identities=16% Similarity=0.200 Sum_probs=220.6
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee---cc-cCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL---EE-HSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l---~~-h~~~V~~i~f 337 (567)
.+....+|+..++... ...+..++.|..+.|+|.+..|+.....+.+.+|+.+.+...++. +. ....|.|++|
T Consensus 178 ~~h~lSVWdWqk~~~~---~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F 254 (626)
T KOG2106|consen 178 NPHMLSVWDWQKKAKL---GPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF 254 (626)
T ss_pred Cccccchhhchhhhcc---CcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence 3445568888777443 344456778999999997765555556889999999887665543 32 2367999999
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----------
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---------- 407 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---------- 407 (567)
.++| -++||..+|.|.||+..+ .+..+....|.+.|.+++...+|. |+ +|+.|+.|..||-.-.+.
T Consensus 255 ~eng-dviTgDS~G~i~Iw~~~~-~~~~k~~~aH~ggv~~L~~lr~Gt-ll-SGgKDRki~~Wd~~y~k~r~~elPe~~G 330 (626)
T KOG2106|consen 255 LENG-DVITGDSGGNILIWSKGT-NRISKQVHAHDGGVFSLCMLRDGT-LL-SGGKDRKIILWDDNYRKLRETELPEQFG 330 (626)
T ss_pred cCCC-CEEeecCCceEEEEeCCC-ceEEeEeeecCCceEEEEEecCcc-Ee-ecCccceEEeccccccccccccCchhcC
Confidence 9988 678999999999999987 444455559999999999998874 44 799999999999321110
Q ss_pred -eEEE---------------------e-----------CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC
Q 008393 408 -TRVF---------------------K-----------GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 408 -~~~~---------------------~-----------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~ 454 (567)
++++ . .+...++.+|..+.+++++.|+.+.+|+ ..+++.+.. -.
T Consensus 331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~ 407 (626)
T KOG2106|consen 331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE 407 (626)
T ss_pred CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence 0110 0 1223466788889999999999999999 444444333 34
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-E
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-T 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-~ 532 (567)
.++.|+.|+|.| .+|.|... ...+.|.++. ..+.... ...++.++.|+|+|.+|++|+.|+.|+||.+..+. .
T Consensus 408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~ 482 (626)
T KOG2106|consen 408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK 482 (626)
T ss_pred CceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence 788999999999 88888877 8899998763 3343333 38899999999999999999999999999987654 3
Q ss_pred E-Eec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M-TLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~-~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+ ... -|..+|+.+.|++|+++|.+-+-|-.|.+|+
T Consensus 483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 3 222 2348999999999999999999999999984
No 123
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=1.5e-23 Score=203.31 Aligned_cols=257 Identities=17% Similarity=0.295 Sum_probs=215.8
Q ss_pred CCccceeccCCccceeeeeec--cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECC
Q 008393 264 AGGRGMDVSQGFSFKEANSVR--ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp 339 (567)
+-+++||+...-.-..+..|. ....-|.+|.+.|||+.|++|+.-.++.|||+... +....+....-.+.+++.+|
T Consensus 440 gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp 519 (705)
T KOG0639|consen 440 GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 519 (705)
T ss_pred CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC
Confidence 346899998754433443333 23567899999999999999999999999999754 44445555556788899999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEeCCeeE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFKGGTAQ 417 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~~~~~~ 417 (567)
|.+..++++.||.|.|||+.+ ...++.|.+|.+.+.||.++++|..|. +|+-|++|+.||+++++.+. .|...+..
T Consensus 520 DakvcFsccsdGnI~vwDLhn-q~~VrqfqGhtDGascIdis~dGtklW-TGGlDntvRcWDlregrqlqqhdF~SQIfS 597 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQQHDFSSQIFS 597 (705)
T ss_pred ccceeeeeccCCcEEEEEccc-ceeeecccCCCCCceeEEecCCCceee-cCCCccceeehhhhhhhhhhhhhhhhhhee
Confidence 999999999999999999998 788999999999999999999998777 99999999999999988764 46678888
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC 496 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~ 496 (567)
+.+.|.+.+++++-.++.+.+......+ .+.+.-|+..|.++.|.+.|+++++.+.| .+..|...-| ..|...+
T Consensus 598 Lg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk- 672 (705)
T KOG0639|consen 598 LGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK- 672 (705)
T ss_pred cccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-
Confidence 9999999999999999999998876543 34666799999999999999999999999 8999998766 3444433
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
....|.+|.++.|+++|++|+.|....||.+
T Consensus 673 E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 673 ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 3567999999999999999999988888865
No 124
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-24 Score=218.09 Aligned_cols=273 Identities=20% Similarity=0.369 Sum_probs=213.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----eeeeeecc---cCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTL----KSKTNLEE---HSSLITDVRFSP-SMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~----~~~~~l~~---h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~ 360 (567)
...+|...++-.-++.++ ...++||.+... ++...++. -...+.+|.|.. +.++|||++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AG-rs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAG-RSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEec-ccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 445677778887787776 346777766532 22222221 122356678864 466999999999999999986
Q ss_pred --CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCC-EEEEEECCC
Q 008393 361 --PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLG-RYLAAAAEN 434 (567)
Q Consensus 361 --~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~-~l~~~~~dg 434 (567)
..+.+..|..|...|++++|++...+++++|+.||+|++||++..+...++.+ .+..+.|+|..+ .|+++...|
T Consensus 120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence 34455678899999999999999999999999999999999999988877765 456788998765 456666678
Q ss_pred eEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 435 VVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 435 ~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
.+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+.| .|+|||+.+... ..+.++. ...++..+.|-|...+
T Consensus 200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence 9999999975 6778899999999999999999999999999 999999976433 3333333 3578899999999887
Q ss_pred EEEEEc---CCeEEEEECCCCcEE--EeccccCCeeEEEEec-CCCEEEEEECCCcEE
Q 008393 513 LLVIGC---YQSLELWNMSENKTM--TLTAHEGLIAALAVST-ETGYVASASHDKFVK 564 (567)
Q Consensus 513 l~~~~~---dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~ 564 (567)
.++.+. |-.|+|||++..-+- .+..|...++.++|.. |...|.+++.||+|.
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 665543 558999999876543 7889999999999954 455788999999864
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=6.2e-23 Score=187.00 Aligned_cols=281 Identities=22% Similarity=0.350 Sum_probs=216.5
Q ss_pred eeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee----------ee-----eecccCccEEEEEECC-CCCeE
Q 008393 282 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS----------KT-----NLEEHSSLITDVRFSP-SMPRL 344 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~----------~~-----~l~~h~~~V~~i~fsp-~~~~l 344 (567)
..+.|.+.|.++.+.+ .|+|+++|+.||.|.|||+++... +. .-.+|...|..+.|-| |...+
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467899999999988 789999999999999999975431 11 1236888999999999 55588
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC--CeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEE
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK--DDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMR 419 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~--~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~ 419 (567)
.+++.|.+++|||..+ ......|+ ..+.|++-+++|-. ..||++|..|-.|++.|+.+|.+.+.+.+ ++..+.
T Consensus 118 tssSFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 8999999999999998 44444554 56778888887743 46888999999999999999999998876 577889
Q ss_pred EecCCCEEEE-EECCCeEEEEECCCC-eEEEEec--------------CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 420 FQPHLGRYLA-AAAENVVSILDAETQ-ACRLSLQ--------------GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 420 ~~~~~~~l~~-~~~dg~I~i~d~~~~-~~~~~~~--------------~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
|+|...++++ ++.||.|++||++.. .+...+. .|.+.|+.++|..++.++++++.| .+++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9999888665 556999999999864 3333332 466789999999999999999998 9999999
Q ss_pred CCCCCCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEE
Q 008393 483 GSGSEGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+|.....-..-..+ ...+. +. +-+...++..-.++.+.++++-++..+ .+..|...|.|.++-|+=....++
T Consensus 276 ~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 276 ESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred ccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 887532211111111 11121 22 334444444555689999999988877 677898899999999988889999
Q ss_pred ECCCcEEEc
Q 008393 558 SHDKFVKLW 566 (567)
Q Consensus 558 s~Dg~I~iW 566 (567)
..|+.|..|
T Consensus 354 ~~d~ni~~w 362 (397)
T KOG4283|consen 354 DMNGNIYMW 362 (397)
T ss_pred ccCCccccc
Confidence 999999988
No 126
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.92 E-value=1.7e-23 Score=203.77 Aligned_cols=235 Identities=17% Similarity=0.266 Sum_probs=190.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee------------cccCccEEEEEECCCCC-eEEEEeCCCcE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL------------EEHSSLITDVRFSPSMP-RLATSSFDKTV 353 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l------------~~h~~~V~~i~fsp~~~-~l~s~s~dg~I 353 (567)
+..|.++.|++.|..|++.+....++|+|-+........ ++|...++|.+|+|+.+ .++|++.||++
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~Dgtl 293 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTL 293 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcE
Confidence 446889999999999988888899999998766555433 47999999999999765 79999999999
Q ss_pred EEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------EeC--CeeEEEE
Q 008393 354 RVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKG--GTAQMRF 420 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~~--~~~~~~~ 420 (567)
+|||+.+....+..++ +..-.++.++|+++++. |++|..||.|.+|+......... +.. .++++.|
T Consensus 294 RiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~F 372 (641)
T KOG0772|consen 294 RIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISF 372 (641)
T ss_pred EEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEe
Confidence 9999997655444443 34457899999999875 77899999999999865432211 222 6899999
Q ss_pred ecCCCEEEEEECCCeEEEEECCCC-eEEEEecCC--CCCeeEEEEcCCCCEEEEEeC-------CeEEEEeCCCCCCCce
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQ-ACRLSLQGH--TKPIDSVCWDPSGELLASVSE-------DSVRVWTVGSGSEGEC 490 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~-------d~I~iwd~~~~~~~~~ 490 (567)
++++++|++-+.|+.+++||++.. +++....+- ..+-+.++|+|+.++|++|+. +.+.+||..+. ..
T Consensus 373 S~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~ 449 (641)
T KOG0772|consen 373 SYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DT 449 (641)
T ss_pred ccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---ee
Confidence 999999999999999999999985 555555542 335678999999999999863 15899998665 67
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
+..+......|..|.|+|.-+.|++++.||.+++|
T Consensus 450 v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 450 VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred EEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 77777778889999999999999999999999886
No 127
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=210.81 Aligned_cols=274 Identities=15% Similarity=0.238 Sum_probs=216.4
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
+|+..-+.++|.++|++|++++.||.|++|+.... +...++..+...|.+++.. +.+|++|+.+++|.+|.+.+ +.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps-~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPS-GE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCC-CC
Confidence 78889999999999999999999999999998765 5555555578888888764 44999999999999999987 44
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.-..+.....++.+++|+.+|+ +++.|+.|-.|++.+..+....+.+. +++.++.|+|.+..+++.+.||.|++||
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred ccceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 4445556678899999999876 55589999999999999887666654 5789999999999999999999999999
Q ss_pred CCCCeEEEEecCC--------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 441 AETQACRLSLQGH--------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 441 ~~~~~~~~~~~~h--------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
+.++.+..++.+- ...+..++|+|+|..|+....| .|++|+...+.....+ ....+...+..+.|+|+|.
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG~ 245 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNGK 245 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCCc
Confidence 9999887766541 3446678999996555555555 9999999877432222 2223344599999999999
Q ss_pred eEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 512 SLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 512 ~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
||++++.+|.|.|||..+... ......|.+++|.|+.+-|-.-..-|...+|
T Consensus 246 YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 246 YIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred EEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 999999999999999998332 3344679999999998866554445544443
No 128
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=208.32 Aligned_cols=274 Identities=23% Similarity=0.314 Sum_probs=208.7
Q ss_pred EEEEcC---CCCeEEEEeCCCcEEEEeCCCCeee------eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 292 CCHFSS---DGKLLATGGHDKKAVLWHTDTLKSK------TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~---dg~~lasg~~dg~I~vwd~~~~~~~------~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
++.|++ ...+||.+..||.|.++|....... .....|...|.++.|.|....|++++.|.++++||+.. .
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~-s 132 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKT-S 132 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecc-c
Confidence 456655 2358899999999999998754333 44557999999999999777999999999999999997 5
Q ss_pred ceeEE--eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE----------EEe------------------
Q 008393 363 YSLRT--FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR----------VFK------------------ 412 (567)
Q Consensus 363 ~~~~~--~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~----------~~~------------------ 412 (567)
.++.. +.+|.+.|.+++|.+.+..+|++|+.||.|.|||++...... .++
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA 212 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA 212 (720)
T ss_pred eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence 55544 889999999999999999999999999999999987533100 000
Q ss_pred --CCeeE---EEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEe--------cCC---CCCeeEEEEcCCCCEEEEEeCC
Q 008393 413 --GGTAQ---MRFQPHLGRYLAAAA-ENVVSILDAETQACRLSL--------QGH---TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 413 --~~~~~---~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~--------~~h---~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..+.. +.+..|...|++++. |+.|++||+++....... ..| ...+.+++.+..|.+|++.+.|
T Consensus 213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 01122 446667788888877 999999999986544332 223 2357788888888887777777
Q ss_pred -eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecC
Q 008393 476 -SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTE 550 (567)
Q Consensus 476 -~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spd 550 (567)
.|++|++.+... ..+..+.++... ...-..+|++.+|++|+.|...++|.+.+.+.- .+.+|.-.|++++|.|.
T Consensus 293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence 999999986432 233333333222 223357899999999999999999999877644 67899999999999874
Q ss_pred C-CEEEEEECCCcEEEcC
Q 008393 551 T-GYVASASHDKFVKLWK 567 (567)
Q Consensus 551 g-~~l~s~s~Dg~I~iWd 567 (567)
. .-+++|++|..++||+
T Consensus 372 ~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 372 ATTPVATCSDDFRVKIWR 389 (720)
T ss_pred cCCCceeeccCcceEEEe
Confidence 3 3477889999999996
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=9.6e-23 Score=196.81 Aligned_cols=263 Identities=16% Similarity=0.226 Sum_probs=201.9
Q ss_pred CCccceeccCCccceeeeeeccCC-CCeEE-EEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRAST-SKVIC-CHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~-l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
....+||..+|- ....+++.. ..-.+ -+. .++|++++.. ...|.+|.+..........--.+.|.+++-+|+
T Consensus 18 ~~~~~~dl~TGt---~~~~ykg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGT---SLLQYKGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCc---eeEEecCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 346788888873 333444331 11111 111 2356666654 457889988765544433345677999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF 420 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 420 (567)
|.+|+.|+..|.|++|.+.+ +..+..+.+|-..|+||.|+.||..+| +|+.||.|.+|++..
T Consensus 93 G~~l~ag~i~g~lYlWelss-G~LL~v~~aHYQ~ITcL~fs~dgs~ii-TgskDg~V~vW~l~~---------------- 154 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSS-GILLNVLSAHYQSITCLKFSDDGSHII-TGSKDGAVLVWLLTD---------------- 154 (476)
T ss_pred ceEEEeecccCcEEEEEecc-ccHHHHHHhhccceeEEEEeCCCcEEE-ecCCCccEEEEEEEe----------------
Confidence 99999999999999999998 788888899999999999999987655 999999999998632
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC--CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~--g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
++.+..+. +-++++.|..|.-+|+.+...+. ..+|++++.| ++++||+..+ ..+..+. .
T Consensus 155 ------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-f 216 (476)
T KOG0646|consen 155 ------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-F 216 (476)
T ss_pred ------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-c
Confidence 22222222 44677788899999999988765 4589999999 9999999877 4444443 4
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----------------EEEeccccC--CeeEEEEecCCCEEEEEE
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----------------TMTLTAHEG--LIAALAVSTETGYVASAS 558 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----------------~~~~~~h~~--~V~~l~~spdg~~l~s~s 558 (567)
...+.+|+++|-+..+++|+.+|.|.+.++.... ...+.+|.+ .|+|++++-||.+|++|+
T Consensus 217 p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 217 PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 6789999999999999999999999998875432 225678888 999999999999999999
Q ss_pred CCCcEEEcC
Q 008393 559 HDKFVKLWK 567 (567)
Q Consensus 559 ~Dg~I~iWd 567 (567)
.||.|+|||
T Consensus 297 ~dg~VcvWd 305 (476)
T KOG0646|consen 297 EDGKVCVWD 305 (476)
T ss_pred CCCCEEEEe
Confidence 999999997
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.5e-22 Score=202.16 Aligned_cols=282 Identities=21% Similarity=0.297 Sum_probs=223.3
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeee-----ecccCccEEEEEECCCCCeEEEEeCCCcEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN-----LEEHSSLITDVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~-----l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.+.||.+.|+++.|+|++..|++++.|+++.+|.-++. --+.. +.+.........|+|+++.+++-+..|..+
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 34599999999999999999999999999999987643 22222 224455688999999999999999999999
Q ss_pred EEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EE------EeCCeeEEEEecCCC
Q 008393 355 VWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV------FKGGTAQMRFQPHLG 425 (567)
Q Consensus 355 iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~------~~~~~~~~~~~~~~~ 425 (567)
+|...... .....+.||.+.|.+++|+|.|++|+ +.+.|.+-|+|-.-..+.. +. +.....++++-+..-
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflL-svs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLL-SVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCCEEE-EeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 99943312 23345679999999999999998666 8889999999876522111 11 112457777777667
Q ss_pred EEEEEECCCeEEEEECC-------------------------------------------CCe-----------------
Q 008393 426 RYLAAAAENVVSILDAE-------------------------------------------TQA----------------- 445 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~-------------------------------------------~~~----------------- 445 (567)
.++.++.+..+++|+.. ++.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 77778778888888643 010
Q ss_pred ----------------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 446 ----------------CRLSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 446 ----------------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
.+.++.+|...|++++.+|+|+++|+++.. .|++|+..+. ..+..+..|.-.|+.
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTR 577 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEE
Confidence 011244788899999999999999999753 4999999766 556688899999999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE-----EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++|+|||++|++.+.|.++.+|........ ....|..-|.++.|+|++.+++|++.|.+|+||.
T Consensus 578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred EEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 999999999999999999999998655433 3678999999999999999999999999999994
No 131
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=4.1e-23 Score=189.82 Aligned_cols=244 Identities=21% Similarity=0.347 Sum_probs=207.2
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.+.++.+.+|.+.|+.++-......+.+++.|.+.+||.+++ +.++.++.+|.+.|++|.|++.+ .|+++++.|++-.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taH 215 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAH 215 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEecccc-ceEEEccCCcchH
Confidence 456778889999999999988888999999999999999998 88999999999999999999985 4677999999999
Q ss_pred EEEC------CCC--------e--------------------------eeEEEeCC---eeEEEEecCCCEEEEEECCCe
Q 008393 399 YWSI------NNG--------S--------------------------CTRVFKGG---TAQMRFQPHLGRYLAAAAENV 435 (567)
Q Consensus 399 iwd~------~~~--------~--------------------------~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~ 435 (567)
||.. ... + .+..++++ +.+..|-..+..+++++.|.+
T Consensus 216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRT 295 (481)
T KOG0300|consen 216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRT 295 (481)
T ss_pred HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeecccc
Confidence 9972 110 0 01112222 233447777889999999999
Q ss_pred EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE
Q 008393 436 VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 436 I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~ 514 (567)
..+||+++++++..+.+|....+.++-+|.-+++++.+.| +.++||++ .....+..+.+|...|+++.|..+++ ++
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~dd~-vV 372 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNTDDR-VV 372 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEecCCc-ee
Confidence 9999999999999999999999999999999999999999 99999998 45678889999999999999998876 89
Q ss_pred EEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|+.|.+|++||+++.... ...-...+++.++.+..+.+|+.--++..|+|||
T Consensus 373 SgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 373 SGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred ecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999999876543 3344567899999998888888887788899986
No 132
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=6.4e-22 Score=182.05 Aligned_cols=224 Identities=18% Similarity=0.321 Sum_probs=184.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.|..++.+++|.++ ..+++|+.||.|+++|+.++.. ..+..|...|.||.+++....+++|++|++|++||... ...
T Consensus 52 ~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~-~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE-DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVV 128 (323)
T ss_pred ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc-eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-ccc
Confidence 58899999999984 5788999999999999987654 45667999999999999888999999999999999986 333
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-----EEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-----RVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
...+. ....|.++... ++.|+ .|+.|..|.+||+++.... ..++-.+.++++.|++.-+++++-||.|.+=
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~~Lv-Vg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE 204 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GNRLV-VGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVE 204 (323)
T ss_pred ccccc-cCceEEEEecc--CCEEE-EeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEE
Confidence 44443 34589999887 34455 7888999999999986543 3456678899999999999999999999887
Q ss_pred ECCCC----eEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 440 DAETQ----ACRLSLQGHT---------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 440 d~~~~----~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
.++.. +..+.|+.|. .+|++|+|+|-...||+|+.| .|.+||+.+. +.+..+......|..++
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~sls 281 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLS 281 (323)
T ss_pred ccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEE
Confidence 66655 5556666664 369999999998999999999 9999999765 56667766677899999
Q ss_pred EeCCCCeEEEEEc
Q 008393 506 FHPTYPSLLVIGC 518 (567)
Q Consensus 506 ~sp~~~~l~~~~~ 518 (567)
|+.+|..|++++.
T Consensus 282 fs~dG~~LAia~s 294 (323)
T KOG1036|consen 282 FSMDGSLLAIASS 294 (323)
T ss_pred eccCCCeEEEEec
Confidence 9999999999875
No 133
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.9e-22 Score=206.79 Aligned_cols=238 Identities=17% Similarity=0.261 Sum_probs=201.2
Q ss_pred ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe
Q 008393 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS 406 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~ 406 (567)
.|....+.|+|.|+|+.|++++.||.|++|+.......-.++..+...|.+++.... .|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCCC
Confidence 688889999999999999999999999999987653334444447888888887643 56699999999999998875
Q ss_pred ---eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 407 ---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 407 ---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
.+..|.-+..+++++-+|.++++|+.|-.|++.+..+......+++|.++|.+|.|+|.+++||+.+.| .|+|||+
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~ 167 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDL 167 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEc
Confidence 567788899999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred CCCCCCceEEEee----cC-CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-E--eccccCCeeEEEEecCCCEE
Q 008393 483 GSGSEGECVHELS----CN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-T--LTAHEGLIAALAVSTETGYV 554 (567)
Q Consensus 483 ~~~~~~~~i~~~~----~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~--~~~h~~~V~~l~~spdg~~l 554 (567)
.++.....+..+. .. ...+..++|+|++..+++.+.|+.|.+|+..+.+.. . ...+...+.++.|+|+|+||
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Yi 247 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYI 247 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEE
Confidence 8763322222111 11 344677899999999999999999999999988765 2 23444559999999999999
Q ss_pred EEEECCCcEEEcC
Q 008393 555 ASASHDKFVKLWK 567 (567)
Q Consensus 555 ~s~s~Dg~I~iWd 567 (567)
|+++.||.|.|||
T Consensus 248 AAs~~~g~I~vWn 260 (933)
T KOG1274|consen 248 AASTLDGQILVWN 260 (933)
T ss_pred eeeccCCcEEEEe
Confidence 9999999999997
No 134
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=1.7e-22 Score=190.04 Aligned_cols=246 Identities=21% Similarity=0.421 Sum_probs=196.8
Q ss_pred eccCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCC----------------CCeeeeeecccCccEEEEEECCCC-Ce
Q 008393 283 VRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTD----------------TLKSKTNLEEHSSLITDVRFSPSM-PR 343 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~----------------~~~~~~~l~~h~~~V~~i~fsp~~-~~ 343 (567)
.-+|.+.|.-+..++-+ .+.|+-+..|.|.||++. ..++++++.+|...-+.|+|+|-. ..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34677777777777754 455566778999999874 346788899999999999999932 36
Q ss_pred EEEEeCCCcEEEEEcCCCCcee--EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEe
Q 008393 344 LATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQ 421 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 421 (567)
|++|..-+.|++|...++...+ ..+.+|+..|..|+|+|..+.+|++|+-||+|+|||++.+.....
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~----------- 295 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAA----------- 295 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccce-----------
Confidence 8888888899999998754433 456789999999999999999999999999999999997632211
Q ss_pred cCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 422 PHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 422 ~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
+ ..+.|.+.|+.|.|+..-.+||+|++| +++|||++..+....+..++.|..+
T Consensus 296 -------------------------~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 296 -------------------------V-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred -------------------------e-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 1 235688999999999988899999999 9999999998888999999999999
Q ss_pred eEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcE-----------------EEeccc--cCCeeEEEEecCC-CEEEEEEC
Q 008393 501 FHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT-----------------MTLTAH--EGLIAALAVSTET-GYVASASH 559 (567)
Q Consensus 501 i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~-----------------~~~~~h--~~~V~~l~~spdg-~~l~s~s~ 559 (567)
|+++.|+|.. ..|++++.|..|.|||+....- .-+..| ...|..+.|++.- .+|++.+.
T Consensus 350 ItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~ 429 (440)
T KOG0302|consen 350 ITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAI 429 (440)
T ss_pred eeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecc
Confidence 9999999954 5678889999999999864321 022334 3468888998753 58888888
Q ss_pred CCcEEEc
Q 008393 560 DKFVKLW 566 (567)
Q Consensus 560 Dg~I~iW 566 (567)
|| +.||
T Consensus 430 dG-fnVf 435 (440)
T KOG0302|consen 430 DG-FNVF 435 (440)
T ss_pred cc-eeEE
Confidence 98 4554
No 135
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=1.4e-22 Score=195.46 Aligned_cols=227 Identities=19% Similarity=0.354 Sum_probs=185.1
Q ss_pred CccceeccCCc-------cceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-------eeeeeecccC
Q 008393 265 GGRGMDVSQGF-------SFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-------KSKTNLEEHS 329 (567)
Q Consensus 265 ~~~~~~~~~~~-------~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~ 329 (567)
.+.+||..+-. .+..-.+|++|...-++++|++.. -+|++|+.|++|++||+... .....+.+|.
T Consensus 148 dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~ 227 (422)
T KOG0264|consen 148 DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE 227 (422)
T ss_pred CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC
Confidence 34455555432 233445899999988899999954 48899999999999999743 2356678999
Q ss_pred ccEEEEEECCC-CCeEEEEeCCCcEEEEEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 330 SLITDVRFSPS-MPRLATSSFDKTVRVWDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 330 ~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
..|..++|++- ..+|++++.|+.+.|||+++ ..++.....+|.+.|.|++|+|-+..+|++|+.|++|++||+++..
T Consensus 228 ~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~- 306 (422)
T KOG0264|consen 228 DVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN- 306 (422)
T ss_pred cceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-
Confidence 99999999994 55889999999999999995 3556677889999999999999999999999999999999998643
Q ss_pred eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCC
Q 008393 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~ 485 (567)
++++++.+|...|.+|.|+|+. .+||+++.| .+.|||+..-
T Consensus 307 -------------------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 307 -------------------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred -------------------------------------cCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 2445888999999999999954 588888888 9999999742
Q ss_pred C-----------CCceEEEeecCCCceEEEEEeCCCCeEE-EEEcCCeEEEEECCC
Q 008393 486 S-----------EGECVHELSCNGNKFHSCVFHPTYPSLL-VIGCYQSLELWNMSE 529 (567)
Q Consensus 486 ~-----------~~~~i~~~~~~~~~i~~~~~sp~~~~l~-~~~~dg~I~iwd~~~ 529 (567)
. .++.+....+|...|..+.|+|+..+++ +.+.|+.+.||.+..
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 2 2455677889999999999999998655 456778999999864
No 136
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.8e-21 Score=190.52 Aligned_cols=219 Identities=16% Similarity=0.230 Sum_probs=175.8
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS 340 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~ 340 (567)
-.++.+.+|++..+|-.+.+-.. +-...|.+++|++ +..|++.+.+|.|.-||+.+++.+..+....+.|++++.+|.
T Consensus 44 Rt~g~IEiwN~~~~w~~~~vi~g-~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~ 121 (691)
T KOG2048|consen 44 RTDGNIEIWNLSNNWFLEPVIHG-PEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE 121 (691)
T ss_pred ccCCcEEEEccCCCceeeEEEec-CCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCc
Confidence 35667889999887654443333 4456899999995 557778888999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------ 413 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------ 413 (567)
+..++.|++||.+..++...+.-. .+.+...++.|.+++|++++.+++ +|+.||.|++||...+..+.....
T Consensus 122 ~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~-~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~ 200 (691)
T KOG2048|consen 122 NTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIA-GGSIDGVIRIWDVKSGQTLHIITMQLDRLS 200 (691)
T ss_pred cceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEE-ecccCceEEEEEcCCCceEEEeeecccccc
Confidence 999999999997777777653222 133445568999999999986555 999999999999999987774321
Q ss_pred -CeeE----EEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 414 -GTAQ----MRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 414 -~~~~----~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
.... +.|- ..+.+++|...|.|.+||...+..+..+..|...|.+++..++++++++++.| .|.-|...
T Consensus 201 k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~ 275 (691)
T KOG2048|consen 201 KREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLT 275 (691)
T ss_pred cCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEec
Confidence 1223 3344 45889999999999999999999999999999999999999999999999888 66655443
No 137
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.3e-21 Score=191.89 Aligned_cols=276 Identities=15% Similarity=0.219 Sum_probs=225.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
+.+.-...+|.|+||+.+.+.||.+-.||.|.+|++...- ....+.++ ...|.+++|+ ++..|++.+.+|.|.-||+
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEec
Confidence 3444557899999999999999999999999999998653 33445544 5679999999 5558999999999999999
Q ss_pred CCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-----eCCeeEEEEecCCCEEEEEECC
Q 008393 359 DNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 359 ~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~d 433 (567)
.+ .+....+....+.|++++.+|.+. .++.|++||.+++++...++..... ++.+.++.|++++.+++.|+.|
T Consensus 98 ~~-lk~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 98 HT-LKQKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred cc-CceeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccC
Confidence 98 677778888889999999999976 4557888999999998888765442 3567889999999999999999
Q ss_pred CeEEEEECCCCeEEEEec-----C---CCCCeeEEEEcCCCCEEEEEe-CCeEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 434 NVVSILDAETQACRLSLQ-----G---HTKPIDSVCWDPSGELLASVS-EDSVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~-----~---h~~~V~~l~~sp~g~~l~s~s-~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
|.|++||..++..++... . ...-|+++.|-.++. |++|. .++|.+||...+ ..+..+..|...|.++
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~L 251 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLAL 251 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeEE
Confidence 999999999987665221 1 223477888887765 45554 449999999777 7788888999999999
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcE--E---EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKT--M---TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~--~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+..+++.+++++|.|+.|.-|...+++. + ....|...|.+++..++ .|++||.|..+.+
T Consensus 252 av~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 252 AVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred EEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence 9999999999999999999998887743 1 44578889999999876 8999999988765
No 138
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.9e-22 Score=190.23 Aligned_cols=241 Identities=22% Similarity=0.408 Sum_probs=191.1
Q ss_pred EEEEEcC-------CCCeEEEEeCCCcEEEEeCCCC---eeee------------------eecccCccEEEEEECCC-C
Q 008393 291 ICCHFSS-------DGKLLATGGHDKKAVLWHTDTL---KSKT------------------NLEEHSSLITDVRFSPS-M 341 (567)
Q Consensus 291 ~~l~~s~-------dg~~lasg~~dg~I~vwd~~~~---~~~~------------------~l~~h~~~V~~i~fsp~-~ 341 (567)
.|++|.. -|+|+|.|+.|..|.|||++-- .+.. ...+|++.|.++.|+.. .
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 3679999999999999998621 1111 12369999999999875 4
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeEEEeCCeeEE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRVFKGGTAQM 418 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---~~~~~~~~~~~~~~ 418 (567)
+.||+|+.|.+|++||+++ +++..++..|.+.|.++.|+|....++++|+.|++|.+.|.+. ......+.+.+..+
T Consensus 257 nVLaSgsaD~TV~lWD~~~-g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT-GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred eeEEecCCCceEEEEEcCC-CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4899999999999999998 8888999999999999999999999999999999999999994 44556788899999
Q ss_pred EEecCCCE-EEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 419 RFQPHLGR-YLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 419 ~~~~~~~~-l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
.|.+.... ++++..||.|+-+|++.. +++++++.|..+|.+|+++.. -.++++++.+ .|++|++.... .+.+...
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~-~~~v~~~ 414 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS-PKSVKEH 414 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC-Ccccccc
Confidence 99998755 556667899999999986 999999999999999999884 4578888888 99999997532 2333322
Q ss_pred ecCCCceEEEEEeCCCCeE-EEEEcCCeEEEEECCCCcEE
Q 008393 495 SCNGNKFHSCVFHPTYPSL-LVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l-~~~~~dg~I~iwd~~~~~~~ 533 (567)
...-+...|.++.|+-.++ ++||..+.++|||+.+...+
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 2223346677788877655 45566667999999876544
No 139
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.89 E-value=2.9e-21 Score=194.52 Aligned_cols=358 Identities=18% Similarity=0.256 Sum_probs=256.1
Q ss_pred eEEEecCCCccccCCCc---eeeeCCC--cchhhcccccccCC-CCCCceEEeeccCC----CCCCCCCccceeccCCcc
Q 008393 207 LMMFGTDGAGTLTSPSN---QLWDDKD--LELRADMDRLVEDG-SLDDNVESFLSHDD----TDPRDAGGRGMDVSQGFS 276 (567)
Q Consensus 207 ~~~~~~dg~~~~~~~~~---~~Wd~~~--g~~~~~~~~~~~~~-~~~~~v~~~~~~~~----~~~~d~~~~~~~~~~~~~ 276 (567)
.+-++|.+..+|++.+. .+|...+ |-.+..+ ++.+.+ .-.......+..+. ..++.+..++|...+...
T Consensus 272 sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v-RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~ 350 (764)
T KOG1063|consen 272 SVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV-RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF 350 (764)
T ss_pred EEEEccchhhheecccCcceEEEecCCccceEEEEE-EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc
Confidence 57788888666665444 7785543 3332222 222222 11112233333332 233445667887555555
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC----CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD----TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~----~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+.....+.||.+.|..++|+|.|++|++.+.|-+-+||-.- +.-.+..-.-|...++|++|-+....+++|...+.
T Consensus 351 w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKV 430 (764)
T KOG1063|consen 351 WTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKV 430 (764)
T ss_pred eeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeeccccee
Confidence 66777889999999999999999999999999999998643 11223334468889999999987678888988899
Q ss_pred EEEEEcCC-------------------------------------------CCc--------------------------
Q 008393 353 VRVWDADN-------------------------------------------PGY-------------------------- 363 (567)
Q Consensus 353 I~iwd~~~-------------------------------------------~~~-------------------------- 363 (567)
+|+|+... ++.
T Consensus 431 lRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq 510 (764)
T KOG1063|consen 431 LRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQ 510 (764)
T ss_pred eeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHH
Confidence 99995420 000
Q ss_pred ------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCCeeeEEEeCC---eeEEEEecCCCEEEE
Q 008393 364 ------SLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNGSCTRVFKGG---TAQMRFQPHLGRYLA 429 (567)
Q Consensus 364 ------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~l~~ 429 (567)
.+..+.||...|++++.+|+++ +++++... ..|++|+..+-..+..+.++ ++.++|+|++.+|++
T Consensus 511 ~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 511 QNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred HhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEE
Confidence 0234458999999999999976 66677653 46999999988777766664 688999999999999
Q ss_pred EECCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE--EeecCCCceE
Q 008393 430 AAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH--ELSCNGNKFH 502 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~--~~~~~~~~i~ 502 (567)
++.|.++.+|...... .....+.|+.-|.+..|+|++.++++++.| +|++|....... +++. ........|+
T Consensus 590 vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVT 668 (764)
T KOG1063|consen 590 VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVT 668 (764)
T ss_pred eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCcee
Confidence 9999999999875431 123367899999999999999999999999 999999976532 2232 2334577888
Q ss_pred EEEEeCC-----CCeEEEEEcCCeEEEEECC------CCcEE-------EeccccCCeeEEEEecC--------C--CEE
Q 008393 503 SCVFHPT-----YPSLLVIGCYQSLELWNMS------ENKTM-------TLTAHEGLIAALAVSTE--------T--GYV 554 (567)
Q Consensus 503 ~~~~sp~-----~~~l~~~~~dg~I~iwd~~------~~~~~-------~~~~h~~~V~~l~~spd--------g--~~l 554 (567)
.+++.|- +..+++|-..|.|.+|... +.... ....|.+.|+.+.|.|. . ..|
T Consensus 669 Av~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~l 748 (764)
T KOG1063|consen 669 AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNL 748 (764)
T ss_pred eEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEE
Confidence 8888773 2367788888999999965 11111 23467788999999975 2 347
Q ss_pred EEEECCCcEEEcC
Q 008393 555 ASASHDKFVKLWK 567 (567)
Q Consensus 555 ~s~s~Dg~I~iWd 567 (567)
++|++|..+||++
T Consensus 749 a~~g~D~~vri~n 761 (764)
T KOG1063|consen 749 AVGGDDESVRIFN 761 (764)
T ss_pred eeecccceeEEee
Confidence 9999999999985
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=9.1e-22 Score=190.78 Aligned_cols=280 Identities=17% Similarity=0.215 Sum_probs=210.4
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC--eeeeeecccCccEEEEEECCCC
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL--KSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~--~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.+++||........++....... .|..+.|+.... .+++.+.|..|++|.-... +....-+...+.-.|++.....
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~p-g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S 91 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEP-GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS 91 (673)
T ss_pred ceEEeecccccCccccccCCCCC-cceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc
Confidence 45677776654333333333222 388999988764 2234456889999965422 2222111122233444444445
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeE
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQ 417 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~ 417 (567)
.|+++|+..+.|+|||+.. +.+.+.+++|...|+++.++... .+|++++..|.|.|..+.++.....|+.+ +.-
T Consensus 92 ~y~~sgG~~~~Vkiwdl~~-kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 92 LYEISGGQSGCVKIWDLRA-KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRL 169 (673)
T ss_pred eeeeccCcCceeeehhhHH-HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceecCCCCeEEE
Confidence 7999999999999999996 77888999999999999998775 46679999999999999999888777654 335
Q ss_pred EEEecCCCEEEE-EECCCeEEEEECCCCeEEEEe-cCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 418 MRFQPHLGRYLA-AAAENVVSILDAETQACRLSL-QGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 418 ~~~~~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~-~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
+.|++....++. ++.+|.|.+||+....+++.+ ..|..+...|||+|. ..+|++.+.| .|.+||++......++
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l-- 247 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL-- 247 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee--
Confidence 678888776554 556899999999998777665 469999999999994 5688899999 9999999865433333
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCC
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTET 551 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg 551 (567)
....++..++|.++|.+|++|...|.|+.||++..+.. .+.+|...|++++|-+..
T Consensus 248 --~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 --TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred --eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 24678899999999999999999999999999876533 677999999999997654
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=188.22 Aligned_cols=248 Identities=16% Similarity=0.221 Sum_probs=203.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeee--eecccC-ccEEEEEECCCCCeEEEEeCCCcE
Q 008393 278 KEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKT--NLEEHS-SLITDVRFSPSMPRLATSSFDKTV 353 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~--~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I 353 (567)
..+..++-...+|.+++|.|+|. .+++++....++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|
T Consensus 248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I 327 (514)
T KOG2055|consen 248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI 327 (514)
T ss_pred hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE
Confidence 35667777788999999999998 99999999999999998876543 333443 457778889999999999999999
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~ 429 (567)
.+....+ +..+..++ -.+.|..++|+.+++.++ +++.+|.|.+||++...+++.+.. +.+.++.+.++.++++
T Consensus 328 ~lLhakT-~eli~s~K-ieG~v~~~~fsSdsk~l~-~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 328 HLLHAKT-KELITSFK-IEGVVSDFTFSSDSKELL-ASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred Eeehhhh-hhhhheee-eccEEeeEEEecCCcEEE-EEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 9999988 66666665 578899999999997777 555689999999999999999864 4577888999999999
Q ss_pred EECCCeEEEEECCC------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 430 AAAENVVSILDAET------QACRLSLQGHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 430 ~~~dg~I~i~d~~~------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
|+..|.|.|||.++ .+++..+..-...|++|.|++|+.+||.++.. .+++-.+.+.......-.....-+.
T Consensus 405 GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~ 484 (514)
T KOG2055|consen 405 GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGH 484 (514)
T ss_pred ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccc
Confidence 99999999999654 46777777777889999999999999998854 7999888654221222222333456
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
++|++|+|.+.++++|..+|.+.+|.+.
T Consensus 485 vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 485 VTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEEecCCCceEEeecCCCceeeEeec
Confidence 8999999999999999999999999874
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=2.6e-21 Score=179.15 Aligned_cols=288 Identities=19% Similarity=0.355 Sum_probs=219.1
Q ss_pred cceeeeee-ccCCCCeEEEEEcC-----CCCeEEEEeCCCcEEEEeCCCCe---eeeeec--ccCccEEEEEECCC----
Q 008393 276 SFKEANSV-RASTSKVICCHFSS-----DGKLLATGGHDKKAVLWHTDTLK---SKTNLE--EHSSLITDVRFSPS---- 340 (567)
Q Consensus 276 ~~~~~~~l-~~h~~~V~~l~~s~-----dg~~lasg~~dg~I~vwd~~~~~---~~~~l~--~h~~~V~~i~fsp~---- 340 (567)
+|+....+ ..|+.+|..++|++ +-..+|++| ...+.+|.....- .+..+. .|.+....++|+-+
T Consensus 26 ~yk~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~ 104 (385)
T KOG1034|consen 26 SYKYTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTG 104 (385)
T ss_pred ceEeeeehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCC
Confidence 34444444 47889999999985 234666665 4578888765322 222222 47777888888654
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC------C
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG------G 414 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~------~ 414 (567)
..+||.|+.-|.|+|.|+.+ +.....+.+|...|..|.|+|+...|+++++.|..|++|++.+..|+..|.+ +
T Consensus 105 ~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc
Confidence 44899999999999999998 7788899999999999999999999999999999999999999999999864 6
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE----------------------------EecCCCCCeeEEEEcCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRL----------------------------SLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----------------------------~~~~h~~~V~~l~~sp~g 466 (567)
+..+.|+.++.++++++.|..|++|++...+... +-..|...|.|+.|- |
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 7889999999999999999999999998321110 112366667777776 5
Q ss_pred CEEEEEeCC-eEEEEeCCC-CC----------CCceEEEeecCCCceEE--EEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 467 ELLASVSED-SVRVWTVGS-GS----------EGECVHELSCNGNKFHS--CVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~-~~----------~~~~i~~~~~~~~~i~~--~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+++++-+-+ .|..|.... .+ ....+.++......++- .+|.+-.+.|+.|...|.|++||++..+.
T Consensus 262 d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep 341 (385)
T KOG1034|consen 262 DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEP 341 (385)
T ss_pred hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCC
Confidence 788887777 999998721 11 11233444444444444 45677789999999999999999987765
Q ss_pred E---Ee--ccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M---TL--TAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~---~~--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. ++ ......|...+|+.|+.+|+..++|++|.-||
T Consensus 342 ~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 342 PKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 3 22 23345799999999999999999999999886
No 143
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.5e-23 Score=209.10 Aligned_cols=214 Identities=22% Similarity=0.344 Sum_probs=191.7
Q ss_pred CCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 260 DPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 260 ~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
++.|..+.+|.+.+.+ .+..|.+|.++|.|+.|+.+..+|++|..+|+|++||++.++.+++|.+|...+..+.|+|
T Consensus 46 Gg~~~k~~L~~i~kp~---~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P 122 (825)
T KOG0267|consen 46 GGEDEKVNLWAIGKPN---AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP 122 (825)
T ss_pred CCCceeeccccccCCc---hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc
Confidence 3445556677766553 4456999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCee
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTA 416 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~ 416 (567)
-+.+++.|+.|+.+++||+.. ..+...+.+|...|.++.|.|+|. +++++++|.+++|||+..|+....|+ +.+.
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQ 200 (825)
T ss_pred ceEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeeccccccccccccccccccc
Confidence 999999999999999999997 668899999999999999999976 56699999999999999999998888 5667
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVR 478 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~ 478 (567)
.+.|+|..-.+..|+.|++|++||+++.+.+...+.....|.+++|+++++.+++|....++
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhhhh
Confidence 78899998888899999999999999999998888888999999999999999988776444
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=2.4e-21 Score=176.68 Aligned_cols=205 Identities=20% Similarity=0.312 Sum_probs=165.8
Q ss_pred ccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCCc------ee--------EEeccCCCcEEEEEEcCCCCeEEEEE
Q 008393 327 EHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPGY------SL--------RTFMGHSASVMSLDFHPNKDDLICSC 391 (567)
Q Consensus 327 ~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~------~~--------~~~~~h~~~V~~l~~~p~~~~li~s~ 391 (567)
.|.+.|+++...+ .|+|+++|+.||.|.+||+++... .. ..-.+|...|.++.|.|-...++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 4778899999887 588999999999999999986321 00 11236888999999999888899999
Q ss_pred eCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 392 DGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 392 ~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
+.|.++++||.++......|+ +.+..-+++|-.- .++++..+-.|++.|+..|.+.+.+.+|...|.++.|+|..
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSS 200 (397)
T ss_pred cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCc
Confidence 999999999999988877665 4455566776432 34455557799999999999999999999999999999976
Q ss_pred C-EEEEEeCC-eEEEEeCCCC------------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 467 E-LLASVSED-SVRVWTVGSG------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 467 ~-~l~s~s~d-~I~iwd~~~~------------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
. .|++|+.| .|++||++.- +....+..-..|.+.+..++|..++.++++.+.|..+++|+...|+
T Consensus 201 e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred eeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 6 57788889 9999999743 1112222344567789999999999999999999999999998875
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6.4e-21 Score=183.70 Aligned_cols=290 Identities=18% Similarity=0.296 Sum_probs=210.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCC-CeEEEEe
Q 008393 276 SFKEANSVRASTSKVICCHFSSDG--KLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSM-PRLATSS 348 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s 348 (567)
.+......+-|.+.|+|++|+|.. +++|+|..-|.|-+||+.+ ..-+..+..|..+|.+|.|+|.+ ..+++.+
T Consensus 175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 345667788899999999999965 5888999999999999952 23356677899999999999954 5899999
Q ss_pred CCCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEeCCeeEEEEecC
Q 008393 349 FDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFKGGTAQMRFQPH 423 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~~ 423 (567)
.||+|++-|+++.-. .+..+......+.++.|+.+...++ .++.-|...+||++++.. ++..+..+..++++|.
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~ 333 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPV 333 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecCCC
Confidence 999999999986321 1222223445677788887766555 666667999999998654 2334457888999998
Q ss_pred CCEE-EEEECCCeEEEEECCCCe----EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC---CCCCC-ceEEE
Q 008393 424 LGRY-LAAAAENVVSILDAETQA----CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG---SGSEG-ECVHE 493 (567)
Q Consensus 424 ~~~l-~~~~~dg~I~i~d~~~~~----~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~---~~~~~-~~i~~ 493 (567)
..++ ++++.|++++|||++... ++.....|...|.+..|+|.+-.|++.+.| .|+|||.. ..... ..|..
T Consensus 334 ~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~H 413 (498)
T KOG4328|consen 334 CPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPH 413 (498)
T ss_pred CchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeec
Confidence 7765 556669999999998642 234455699999999999987778888888 99999984 11111 11111
Q ss_pred eecCCCc--eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccC-CeeE-EEEecCCCEEEEEE-CCCcEEEc
Q 008393 494 LSCNGNK--FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEG-LIAA-LAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 494 ~~~~~~~--i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~-~V~~-l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
-..++.. ....+|.|+..+|++|..-..|.|||-..++.+ .+..... .|.+ ..|+|-+..+++|+ .-|.|+||
T Consensus 414 n~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vf 492 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVF 492 (498)
T ss_pred cCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEE
Confidence 1111122 234589999999999999899999999888855 4333222 4444 46899887455554 57888887
No 146
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=6.9e-21 Score=175.92 Aligned_cols=266 Identities=18% Similarity=0.265 Sum_probs=204.8
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------------eeeeeec-ccCccEEEEEEC-------CCCCeEEEEeC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTL------------KSKTNLE-EHSSLITDVRFS-------PSMPRLATSSF 349 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~------------~~~~~l~-~h~~~V~~i~fs-------p~~~~l~s~s~ 349 (567)
...+.|+|||..|++-+.|..+.+|++... +....++ .....|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 346899999999999999999999987521 1111122 234567788885 56779999999
Q ss_pred CCcEEEEEcCCCCceeEEecc--CCC---cEEEEEEcCCCCeEEEEEeCCCcEEEEEC-CCCeeeEE----------EeC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG--HSA---SVMSLDFHPNKDDLICSCDGDGEIRYWSI-NNGSCTRV----------FKG 413 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~--h~~---~V~~l~~~p~~~~li~s~~~dg~I~iwd~-~~~~~~~~----------~~~ 413 (567)
+.-|++||.-+ ++....+.+ |.. ...+++|+|||..|+ ++....|++||+ +.|..... ..+
T Consensus 132 ~~PIh~wdaft-G~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 132 DQPIHLWDAFT-GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred cCceeeeeccc-cccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 99999999988 554444432 333 356899999999877 456889999999 55543222 123
Q ss_pred CeeEEEEecCCC-EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCce
Q 008393 414 GTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGEC 490 (567)
Q Consensus 414 ~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~ 490 (567)
-+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+.. .|..||++... ..
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p 286 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP 286 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence 467889999877 56667778899999999999999999999999999999999999999864 99999998542 44
Q ss_pred EEEeecCCC---ceEEEEEeCCCCeEEEEEcCCeEEEEECCC-Cc-EEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 491 VHELSCNGN---KFHSCVFHPTYPSLLVIGCYQSLELWNMSE-NK-TMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 491 i~~~~~~~~---~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-~~-~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+..+..|.. .-.-....|++++|++|+.+|.|++||+++ +. ...+..|...|+.++++|--.++|+++-.
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 445544433 233345678999999999999999999998 55 34677899999999999998888887643
No 147
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-22 Score=213.41 Aligned_cols=272 Identities=19% Similarity=0.285 Sum_probs=214.3
Q ss_pred EEEEcCCCC-eEEEEe----------CCCcEEEEeCCCCe------eeeeecccCccEEEEEECCCCCe----EEEEeCC
Q 008393 292 CCHFSSDGK-LLATGG----------HDKKAVLWHTDTLK------SKTNLEEHSSLITDVRFSPSMPR----LATSSFD 350 (567)
Q Consensus 292 ~l~~s~dg~-~lasg~----------~dg~I~vwd~~~~~------~~~~l~~h~~~V~~i~fsp~~~~----l~s~s~d 350 (567)
.++|+|++. ++|+|. .+.++.||.++... .+..+. -....+.++|.+.+.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 578999886 555543 34566666654222 222222 3456789999987765 8999999
Q ss_pred CcEEEEEcCCC-----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----EeCCeeEEEE
Q 008393 351 KTVRVWDADNP-----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----FKGGTAQMRF 420 (567)
Q Consensus 351 g~I~iwd~~~~-----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~~~~~~~~~~ 420 (567)
|.|.+||.... ...+.++..|.+.|..++|++....++++|+.||.|.|||++..+.-.. ....+.+++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 99999998751 2346677889999999999999999999999999999999998554333 3456888999
Q ss_pred ecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCC-EEEEEeCC----eEEEEeCCCCCCCceEE
Q 008393 421 QPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHTK--PIDSVCWDPSGE-LLASVSED----SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~-~l~s~s~d----~I~iwd~~~~~~~~~i~ 492 (567)
+..-.++++.+. +|.+.|||++..+.+..+..+.. .+..|+|+|++. .|+++++| .|.+||++.-. ..+.
T Consensus 170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k 247 (1049)
T KOG0307|consen 170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK 247 (1049)
T ss_pred chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence 887777666554 77999999999998888877655 467899999764 45555544 69999998543 4566
Q ss_pred EeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCC-EEEEEECCCcEEEc
Q 008393 493 ELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETG-YVASASHDKFVKLW 566 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW 566 (567)
++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++.+ .+.....++..+.|+|... .++.++-||.|-||
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~ 324 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY 324 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence 778999999999999977 88899999999999999999988 6777788999999999776 78888999999887
No 148
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.88 E-value=7.6e-21 Score=190.12 Aligned_cols=269 Identities=17% Similarity=0.271 Sum_probs=213.5
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.|..++|-|||..|+.+. +..+.+||...|..+.++++|.+.|.|++|+.||+.+++|+.|+.|.+|+-.-.+. ..
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~--Lk- 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI--LK- 89 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce--ee-
Confidence 789999999999888775 66899999999999999999999999999999999999999999999999765332 22
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEE
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
..|...|.|+.|+|-.. .+++|+ -...-+|........+ .....+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus 90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 35999999999999855 455776 3467789877655433 23345677889999999999999999999865544333
Q ss_pred EEe--cCCCCCeeEEEEcCCC-----CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC
Q 008393 448 LSL--QGHTKPIDSVCWDPSG-----ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 448 ~~~--~~h~~~V~~l~~sp~g-----~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
..- .+...+|++|+|+|.. ..+++...+ ++.+|.+.. +.|..-..-+....|+.+.++|.++++||.|
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd 243 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD 243 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence 222 2467899999999953 366666666 777777643 3343333344556788999999999999999
Q ss_pred CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+.+.+|.-+.-..-++.....+|+.++..|++.+++.|+.||+|--|+
T Consensus 244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 999999755444446777888999999999999999999999997664
No 149
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=6.5e-22 Score=201.49 Aligned_cols=221 Identities=20% Similarity=0.356 Sum_probs=186.4
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC-
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP- 339 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp- 339 (567)
.-+.+-+||+.+...-+.+..|..|+..|.++.|++. -.+|++|+.||.|++||+...+.+.++.+..+.|++|.|+|
T Consensus 108 ~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 108 TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccC
Confidence 3456789999886666777889999999999999985 47899999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEe--CCe
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK--GGT 415 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~--~~~ 415 (567)
.+.+|+++.+.|.+.+||++.+..+...+..|.++|.|+.|+|+ ..+|+||+.|+.|+|||+.+.+... ++. .++
T Consensus 188 ~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv 266 (839)
T KOG0269|consen 188 YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPV 266 (839)
T ss_pred CCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCCccEEEEeccCCCccceeEEeeccee
Confidence 46689999999999999999988889999999999999999996 5578899999999999998765433 332 467
Q ss_pred eEEEEecCCCEEEEEEC---CCeEEEEECCCC-eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCC
Q 008393 416 AQMRFQPHLGRYLAAAA---ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~ 483 (567)
.+++|-|...+.++.+. |-.|+|||++.. -+..++..|...++.++|.. |...|.+++.| .|..-.++
T Consensus 267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 89999999887766655 779999999876 56678889999999999976 45577777777 55444443
No 150
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=178.40 Aligned_cols=313 Identities=18% Similarity=0.219 Sum_probs=228.2
Q ss_pred eEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC------Ceeee
Q 008393 250 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT------LKSKT 323 (567)
Q Consensus 250 v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~------~~~~~ 323 (567)
+..||...+..+.....+.+........-+.+.+++|.+.|.++.|+.++++||+|+.|..++||+++. .+++.
T Consensus 19 i~~FL~QR~i~~~~~~~k~F~~~~~~R~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~ 98 (609)
T KOG4227|consen 19 IESFLCQREIGSVKSVVKTFRPDFQHRPFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG 98 (609)
T ss_pred eeeeeeecccCCChhhhhhhchhhhhcchhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce
Confidence 567777776666555444333322222224467889999999999999999999999999999999863 34444
Q ss_pred eec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec--cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 324 NLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM--GHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 324 ~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
... .|...|.|++|...++.|++|..+++|.+.|+++ ...+..+. ...+.|+.+..+|..+ ++++.+.++.|.+|
T Consensus 99 ~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt-~qsi~V~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET-KQSIYVANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFI 176 (609)
T ss_pred eccCccccceEEEEEccCCeeEecCCCcceeEeeeccc-ceeeeeecccCcccceeecccCCCCc-eEEEEecCceEEEE
Confidence 443 4668999999999999999999999999999998 55444443 2235899999999954 66688899999999
Q ss_pred ECCCCe-e-----eEEEeCCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCe-EEEEec------CCCCCeeEEEEcCCC
Q 008393 401 SINNGS-C-----TRVFKGGTAQMRFQPHLGRYLAA-AAENVVSILDAETQA-CRLSLQ------GHTKPIDSVCWDPSG 466 (567)
Q Consensus 401 d~~~~~-~-----~~~~~~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~-~~~~~~------~h~~~V~~l~~sp~g 466 (567)
|++... . ..........+.|+|....|++. ...+.+-+||.+... .+.... .......++.|+|+|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 998754 2 22223345677899988776554 457899999998753 222221 112234678899999
Q ss_pred CEEEEEeCC-eEEEEeCCCCCCCceEEEeecC------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC---------
Q 008393 467 ELLASVSED-SVRVWTVGSGSEGECVHELSCN------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN--------- 530 (567)
Q Consensus 467 ~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~--------- 530 (567)
+.|.+--.+ .-.+||+-+.. ..+..+... ...+.+|+|..|.. +++|+.+-.|++|.+...
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R--~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~I 333 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQR--CFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQI 333 (609)
T ss_pred CeehhhhccCCCEEeeeeccc--ceeEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCcccc
Confidence 998888777 67788886531 222222211 12366778877766 888888889999987421
Q ss_pred ---------------cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 ---------------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ---------------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....+.+|..-++.+.|+|...+|++.+....++||-
T Consensus 334 G~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 334 GHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred CcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 1336789999999999999999999999999999993
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.87 E-value=7.5e-21 Score=189.92 Aligned_cols=247 Identities=15% Similarity=0.259 Sum_probs=187.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeee--ecccCccEEEEEECCCCC-eEEEEeCCCcEEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 357 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd 357 (567)
.....|.+.|..+.|-|....|++++.|.++++||+++.+++.. +.+|...|.+++|.+.+. .|++|+.||.|.|||
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 55668999999999999767899999999999999999988877 889999999999999655 789999999999999
Q ss_pred cCCCCc--------------------------eeEEeccCCCcEEE---EEEcCCCCeEEEEEeC-CCcEEEEECCCCee
Q 008393 358 ADNPGY--------------------------SLRTFMGHSASVMS---LDFHPNKDDLICSCDG-DGEIRYWSINNGSC 407 (567)
Q Consensus 358 ~~~~~~--------------------------~~~~~~~h~~~V~~---l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~ 407 (567)
+.-.+. .++....+...|.+ +.+..|... |++++. |+.|+|||++...+
T Consensus 174 ~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t-laSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 174 CRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST-LASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred EeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce-eeeccCCCcceEEEeeccccc
Confidence 874220 01122234444444 444455454 456666 99999999997654
Q ss_pred eEEE--------------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecCCCCC--eeEEEEcCCCCEE
Q 008393 408 TRVF--------------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKP--IDSVCWDPSGELL 469 (567)
Q Consensus 408 ~~~~--------------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~--V~~l~~sp~g~~l 469 (567)
.... ..+..++.....|.++++.+.|+.|++||+.+. .++..+.++... ...-..+|++.+|
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l 332 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSL 332 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceE
Confidence 4321 124566777788899999999999999999875 344445443221 1223568999999
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~ 530 (567)
++|+.| ..++|.+.+.. .....+.+|...|++++|.|.. .-+++++.|..++||++..+
T Consensus 333 ~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 333 LSGSSDEQAYIWVVSSPE--APPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eccCCCcceeeeeecCcc--CChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 999999 99999997643 4455677888999999998843 34777799999999999654
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.3e-20 Score=172.07 Aligned_cols=241 Identities=16% Similarity=0.232 Sum_probs=179.9
Q ss_pred eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 323 TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
..|++|.+.|++++|+.||++|++++.|+.|+||+++.-.. +++.-- .-+..+.+.|.||-..+++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 45789999999999999999999999999999999985211 111111 1235678999999999999998888999
Q ss_pred EEECCCCee---eEE------------EeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc
Q 008393 399 YWSINNGSC---TRV------------FKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD 463 (567)
Q Consensus 399 iwd~~~~~~---~~~------------~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s 463 (567)
+|.+...+- ... ....+..+-....+.++++++.|..|.+|+++ |+.+..+......-+..+.+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence 998754321 110 11122334445556778888889999999999 87777777666666778999
Q ss_pred CCCCEEEEEeCC-eEEEEeCCCC-----CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc------
Q 008393 464 PSGELLASVSED-SVRVWTVGSG-----SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK------ 531 (567)
Q Consensus 464 p~g~~l~s~s~d-~I~iwd~~~~-----~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~------ 531 (567)
|+|++|++++-- .|++|.+--+ .+...+..+++|...|..++|+++...+++.+.||+++|||..-.-
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp 317 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP 317 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence 999999999988 9999998533 3345677899999999999999999999999999999999985321
Q ss_pred -EE-----EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 532 -TM-----TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 532 -~~-----~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
.+ .+.+-.+....|+++|+|..||.+. ...|++|
T Consensus 318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~ 357 (420)
T KOG2096|consen 318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF 357 (420)
T ss_pred hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence 11 1122233444899999999887643 2345543
No 153
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.4e-21 Score=207.66 Aligned_cols=242 Identities=19% Similarity=0.363 Sum_probs=201.5
Q ss_pred CCCeEEEEEcCCCCe----EEEEeCCCcEEEEeCCCC------eeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEE
Q 008393 287 TSKVICCHFSSDGKL----LATGGHDKKAVLWHTDTL------KSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRV 355 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~----lasg~~dg~I~vwd~~~~------~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~i 355 (567)
....+.++|.+.|.. ||.|..||.|.+||.... ..+.+...|.+.|..+.|++... +||+|+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 445678999987765 888999999999998652 34566778999999999999765 9999999999999
Q ss_pred EEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-----eeEEEEecCCCE-EE
Q 008393 356 WDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-----TAQMRFQPHLGR-YL 428 (567)
Q Consensus 356 wd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-----~~~~~~~~~~~~-l~ 428 (567)
||+.+....... -......|.+|+|+..-.+++++++.+|.+.|||++..+.+..+... ...+.|+|+... ++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999874433322 12356789999999988899999999999999999999877666543 457899998864 55
Q ss_pred EEECC---CeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 429 AAAAE---NVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 429 ~~~~d---g~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
+++.| -.|.+||++.- ..+..+.+|...|.++.|++.+ .+|++++.| .|.+|+.+++ +.+.++...++++.
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCF 300 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCccee
Confidence 55554 38999999875 6777888999999999999965 899999999 9999999887 78889988899999
Q ss_pred EEEEeCCCC-eEEEEEcCCeEEEEECCCCc
Q 008393 503 SCVFHPTYP-SLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 503 ~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+.|.|... .+++++-||.|.||.+.+..
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999887 67788899999999998765
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.86 E-value=5.2e-21 Score=172.15 Aligned_cols=280 Identities=18% Similarity=0.206 Sum_probs=204.4
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
+...|++|.+.|+|+.|..+++ |.+|..-|.|.+|++.+.+.+..++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ 83 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT 83 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence 5567889999999999998875 8889999999999999999999998 67888999998887 5889999999999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-cEEEE-----------ECCCCeeeEEEe-------CCeeEE
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-EIRYW-----------SINNGSCTRVFK-------GGTAQM 418 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-~I~iw-----------d~~~~~~~~~~~-------~~~~~~ 418 (567)
+.. .. ....|.-.++++.|++.. +...+... ....+ |......+...+ +.+.+.
T Consensus 84 ia~-s~---~i~i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~ 156 (323)
T KOG0322|consen 84 IAY-SA---FISIHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQ 156 (323)
T ss_pred ccC-cc---eEEEeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeee
Confidence 986 22 222344556666666431 11211111 11122 221111121111 122222
Q ss_pred EEec-CCC--EEEEEECCCeEEEEECCCCe----------EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC
Q 008393 419 RFQP-HLG--RYLAAAAENVVSILDAETQA----------CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 419 ~~~~-~~~--~l~~~~~dg~I~i~d~~~~~----------~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~ 484 (567)
.+.. ++. .+++|..+|.|.+||+.++. .......|..+|.++.|.+.-..=++|+.+ .+..|.+..
T Consensus 157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred eccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecc
Confidence 2221 122 35566779999999999973 334445689999999998755555677777 899998864
Q ss_pred C-CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 485 G-SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 485 ~-~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
. .....-.++......+..+.+-||++.++++|.|+.|+||..++...+ .+..|.+.|++++|+|+..++|.++.|+.
T Consensus 237 s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r 316 (323)
T KOG0322|consen 237 STGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR 316 (323)
T ss_pred ccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce
Confidence 3 222233344445667888899999999999999999999999999888 67789999999999999999999999999
Q ss_pred EEEcC
Q 008393 563 VKLWK 567 (567)
Q Consensus 563 I~iWd 567 (567)
|.+|+
T Consensus 317 ISLWk 321 (323)
T KOG0322|consen 317 ISLWK 321 (323)
T ss_pred EEeee
Confidence 99996
No 155
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=2.9e-20 Score=179.16 Aligned_cols=254 Identities=18% Similarity=0.237 Sum_probs=199.2
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCC---CCceeEEeccCCCcEEEEEEcCCCCeEE
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---PGYSLRTFMGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~~p~~~~li 388 (567)
+|+.+......++.+...|++++|+|..+ ++++|..-|.|-+||+.+ ...-+..+..|..+|.+|.|+|.....|
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i 250 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI 250 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence 44455566666778899999999999654 788899999999999952 2334567788999999999999988888
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeC-----CeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEecCCCCCeeEEEE
Q 008393 389 CSCDGDGEIRYWSINNGSCTRVFKG-----GTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCW 462 (567)
Q Consensus 389 ~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~V~~l~~ 462 (567)
++.+.||+|++-|++.......+.. ....+.|+.+...++++..-|.+.+||++++.. ...+.-|+..|.+|++
T Consensus 251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 8999999999999998754433322 344566778888888888888999999998754 6677779999999999
Q ss_pred cCC-CCEEEEEeCC-eEEEEeCCCCCCCc-eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC----CCcEEEe
Q 008393 463 DPS-GELLASVSED-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS----ENKTMTL 535 (567)
Q Consensus 463 sp~-g~~l~s~s~d-~I~iwd~~~~~~~~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~----~~~~~~~ 535 (567)
+|- -.+||+++.| +++|||++...... .+.....|...|.+..|+|.+..|++.+.|..|+|||.. .......
T Consensus 331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~ 410 (498)
T KOG4328|consen 331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT 410 (498)
T ss_pred CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence 995 4588999999 99999998764433 244555688899999999999889999999999999984 2222222
Q ss_pred ccccC------CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 536 TAHEG------LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 536 ~~h~~------~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|.. ......|.|+..+|++|-.-..|-|+|
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~ 448 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD 448 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence 23322 234557999999999998877777765
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.86 E-value=8.1e-20 Score=181.90 Aligned_cols=208 Identities=18% Similarity=0.244 Sum_probs=148.1
Q ss_pred CccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee------eeeecccCccEEEEEECCCCCeEEE
Q 008393 274 GFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS------KTNLEEHSSLITDVRFSPSMPRLAT 346 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~------~~~l~~h~~~V~~i~fsp~~~~l~s 346 (567)
|..-+.+..+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+-. ...+.+..-.|.++.|+|...-|+.
T Consensus 66 Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~ 145 (1012)
T KOG1445|consen 66 GRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILA 145 (1012)
T ss_pred CccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEE
Confidence 334456778999999999999999 556899999999999999974321 1223344557889999998776777
Q ss_pred EeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC----eeEEEEe
Q 008393 347 SSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG----TAQMRFQ 421 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~----~~~~~~~ 421 (567)
.+..|.++|||+.+ .+.+..+.+|...|.+..|+.||. ++++.+.|..|+|||.+.. +.+....++ ...+.|.
T Consensus 146 s~a~g~v~i~D~st-qk~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~ 223 (1012)
T KOG1445|consen 146 SGAHGSVYITDIST-QKTAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWA 223 (1012)
T ss_pred eccCceEEEEEccc-CceeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCCccccccccccchhheeeec
Confidence 77789999999998 777888999999999999999986 6668899999999999864 445444433 2345555
Q ss_pred cCCCEEEEEECC----CeEEEEECCCC-eEEEEecC-CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCC
Q 008393 422 PHLGRYLAAAAE----NVVSILDAETQ-ACRLSLQG-HTKPIDSVCWDPSGELLASVSED--SVRVWTVG 483 (567)
Q Consensus 422 ~~~~~l~~~~~d----g~I~i~d~~~~-~~~~~~~~-h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~ 483 (567)
-+-.++++.+.+ ..|++||.+.. ..++++.- ....|.---|+||.++|+.++.+ ++.++.+.
T Consensus 224 Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~ 293 (1012)
T KOG1445|consen 224 GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQ 293 (1012)
T ss_pred cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEec
Confidence 554566666553 57888888764 33333321 22234444566666666666655 45555543
No 157
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=1.5e-19 Score=172.05 Aligned_cols=285 Identities=22% Similarity=0.288 Sum_probs=204.3
Q ss_pred CCCCCCCccceeccCCc------cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--------C------
Q 008393 259 TDPRDAGGRGMDVSQGF------SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------T------ 318 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~------~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--------~------ 318 (567)
+++.|..+|+|.+..+. ..+....|..|...|+++.|+|+|++||+|+.+|.|.+|... +
T Consensus 31 T~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~k 110 (434)
T KOG1009|consen 31 TAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNK 110 (434)
T ss_pred cccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCc
Confidence 45566677777666543 445677899999999999999999999999999999999765 2
Q ss_pred --CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc
Q 008393 319 --LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE 396 (567)
Q Consensus 319 --~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~ 396 (567)
......+.+|...|..++|+|++.++++++.|..+++||+.. +.....+..|...|..++|.|-+. ++++-+.|..
T Consensus 111 e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~-G~l~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~ 188 (434)
T KOG1009|consen 111 EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHA-GQLLAILDDHEHYVQGVAWDPLNQ-YVASKSSDRH 188 (434)
T ss_pred cceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecc-ceeEeeccccccccceeecchhhh-hhhhhccCcc
Confidence 344567789999999999999999999999999999999998 888899999999999999999865 5558888888
Q ss_pred EEEEECCCCeeeEEEeCCe-eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 397 IRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 397 I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+++.+.....+......+ ....+.... ....++|.-++.+ .-...++|+|+|.+|++...-
T Consensus 189 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~e--------~~s~rLfhDeTlk---------sFFrRlsfTPdG~llvtPag~ 251 (434)
T KOG1009|consen 189 PEGFSAKLKQVIKRHGLDIMPAKAFNERE--------GKSTRLFHDETLK---------SFFRRLSFTPDGSLLVTPAGL 251 (434)
T ss_pred cceeeeeeeeeeeeeeeeEeeecccCCCC--------cceeeeeecCchh---------hhhhhcccCCCCcEEEcccce
Confidence 8888776655444332100 000011110 1133333333322 234567888999888875421
Q ss_pred ----------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC-----------------CCCeEEEEEcCCeEEEEECC
Q 008393 476 ----------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP-----------------TYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 476 ----------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp-----------------~~~~l~~~~~dg~I~iwd~~ 528 (567)
..++|+-. .....+..+.+.......+.|+| -.+.+++....+.|+|||..
T Consensus 252 ~~~g~~~~~n~tYvfsrk--~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq 329 (434)
T KOG1009|consen 252 FKVGGGVFRNTSYVFSRK--DLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQ 329 (434)
T ss_pred eeeCCceeeceeEeeccc--cccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccc
Confidence 23444432 22234444555455554444443 23456667777899999999
Q ss_pred CCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 529 ENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 529 ~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+...+ .-.-|-..|+.++|++||.+|+..+.||...
T Consensus 330 ~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 330 TLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred cccceEEEeeeeeeeecceeecCCCcEEEEeccCCceE
Confidence 87766 4456889999999999999999999999654
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.3e-17 Score=172.51 Aligned_cols=295 Identities=30% Similarity=0.499 Sum_probs=235.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
+..+.+|+... .......+..|...|.+++|++++.++++++. |+.+++|++..++.+..+.+|...|.+++|+|++
T Consensus 133 d~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 133 DGTVKLWDLST--PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CccEEEEEecC--CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCc
Confidence 56778888776 34677889999999999999999999998885 9999999999999999999999999999999999
Q ss_pred C-eEEEEeCCCcEEEEEcCCCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEE---eCCe
Q 008393 342 P-RLATSSFDKTVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVF---KGGT 415 (567)
Q Consensus 342 ~-~l~s~s~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~---~~~~ 415 (567)
. .+++++.|+.|++||... +..+. .+.+|...+ ...|++++ .++++++.|+.+++|++..... ...+ ...+
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v 287 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLST-GKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSV 287 (466)
T ss_pred ceEEEEecCCCcEEEEECCC-CcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccE
Confidence 8 555559999999998885 55555 688888876 44899998 4555899999999999997665 4444 3456
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEE-eCC-eEEEEeCCCCCCCceE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASV-SED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~-s~d-~I~iwd~~~~~~~~~i 491 (567)
..+.|.|++..+++++.++.+.+||..+........ .|...+..+.|.+++..++.+ ..| .+.+|++.... ..
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~ 364 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PL 364 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---ee
Confidence 778899988888888888889999999887776665 788889999994332555555 566 88889997653 22
Q ss_pred EEeecCCCceEEEEEeCCCCeEEE-EEcCCeEEEEECCCCcEEEecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 492 HELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSENKTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~I~iwd~~~~~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
....... .+..+.+.+ ...++. +..++.+.+|+............. ..+..+.+++++.++++++.++.+++|+
T Consensus 365 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 365 KTLEGHS-NVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEecCCc-eEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence 2222222 278888888 543444 578899999999998877554444 8899999999999999999999999995
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.1e-19 Score=176.33 Aligned_cols=281 Identities=17% Similarity=0.222 Sum_probs=211.0
Q ss_pred CceeeeCCCcchhhcccccccCCCCCCceEEeecc----CCCCCCCCCccceeccCCc-cceeeeeeccCCCCeEEEEEc
Q 008393 222 SNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSH----DDTDPRDAGGRGMDVSQGF-SFKEANSVRASTSKVICCHFS 296 (567)
Q Consensus 222 ~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~d~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s 296 (567)
.++|||....+.....-..... .+++-.+|-.. -...+.|..+++|...... ....+..+.+. .-.|++..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~--pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~~ 88 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAE--PGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVACA 88 (673)
T ss_pred ceEEeecccccCccccccCCCC--CcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhhh
Confidence 3589999887665544433332 11111222111 1234456666777654331 12222223332 44566666
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcE
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASV 375 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V 375 (567)
....|+++||..+.|+|||+....+.+.+++|...|+++.|+....|||+++..|.|.|..+.+ +.....|... ...|
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t-~~~tt~f~~~sgqsv 167 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT-KQKTTTFTIDSGQSV 167 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEeccc-CccccceecCCCCeE
Confidence 6668999999999999999998888889999999999999999999999999999999999988 4444445433 4556
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEe
Q 008393 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 376 ~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
.-+.|++..+.++.+++.+|.|.+||+.....+..+ ..+...++|+|.... +++.+.|..|.+||.+..+....+
T Consensus 168 Rll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l 247 (673)
T KOG4378|consen 168 RLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL 247 (673)
T ss_pred EEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence 689999999999999999999999999987766543 457788999998765 455677999999999987766665
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
. ...+...++|.++|.+|+.|... .|..||++..+ ..+..+..|...|++++|-+.-
T Consensus 248 ~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 248 T-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred e-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence 5 45688999999999999999988 99999998653 6777888899999999998764
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=1.4e-17 Score=172.14 Aligned_cols=282 Identities=31% Similarity=0.547 Sum_probs=228.0
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-eeeeecccC-ccEEEEEE-CCCCC-eEEEEeC-CCcEEEE
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-SKTNLEEHS-SLITDVRF-SPSMP-RLATSSF-DKTVRVW 356 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-~~~~l~~h~-~~V~~i~f-sp~~~-~l~s~s~-dg~I~iw 356 (567)
.+..|...|.++.|.+.+..++.++.|+.+.+|+..... ....+..+. ..+..+.+ .+++. +++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 567899999999999999999999999999999998886 677776644 37777777 78887 5555445 9999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEEEE-E
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYLAA-A 431 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~-~ 431 (567)
++.........+..|...|..++|+|++. .+++++. |+.+++|++..+..+..+.+ .+..+.|+|++..++++ +
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 218 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS 218 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec
Confidence 99864566788889999999999999987 4446665 99999999999877777765 67888999888745554 7
Q ss_pred CCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 432 AENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 432 ~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
.|+.|.+||...+.... .+.+|...+ ...|++++.++++++.+ .+++|++..... .+..+..|...+.++.|.|+
T Consensus 219 ~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~ 295 (466)
T COG2319 219 SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPD 295 (466)
T ss_pred CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecCCccEEEEEECCC
Confidence 89999999999888887 688888875 44899999888889999 999999986643 23333667889999999998
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE-Ee--ccccCCeeEEEEecCCCEEEEE-ECCCcEEEcC
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM-TL--TAHEGLIAALAVSTETGYVASA-SHDKFVKLWK 567 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~-~~--~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iWd 567 (567)
+..+++++.|+.+.+||+.+.... .. ..|...+..+.|.+++..++.+ ..|+.+++|+
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeee
Confidence 888988988988999999888766 33 3788889999994332455555 6788898885
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=6e-20 Score=180.28 Aligned_cols=206 Identities=21% Similarity=0.343 Sum_probs=160.0
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECC--CCCeEEEEeCCCcEE
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSP--SMPRLATSSFDKTVR 354 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp--~~~~l~s~s~dg~I~ 354 (567)
.....|.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-| +.+.+++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3456789999999999999999999999999999999998888887775 8999999999998 456899999999999
Q ss_pred EEEcCC---------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EE---------E---e
Q 008393 355 VWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RV---------F---K 412 (567)
Q Consensus 355 iwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~---------~---~ 412 (567)
++|+.. .....+.+..|...|..|+..|++.+.+.++++||+|+-+|++....- .. + -
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999984 233456677899999999999999899999999999999999874321 11 1 1
Q ss_pred CCeeEEEEecCCCE-EEEEECCCeEEEEECCCC--------e----------EEEEec-CCC--------C---CeeEEE
Q 008393 413 GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQ--------A----------CRLSLQ-GHT--------K---PIDSVC 461 (567)
Q Consensus 413 ~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~--------~----------~~~~~~-~h~--------~---~V~~l~ 461 (567)
....++.++|.... |++|+.+-..++||.+.. . ++..+. +|- . .++-++
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 24567888887765 556667889999994321 1 122221 222 1 145678
Q ss_pred EcCCCCEEEEEeCC-eEEEEeCC
Q 008393 462 WDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 462 ~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
|+|+|.-|+..-.+ .|+++|+.
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeec
Confidence 99999755555444 99999987
No 162
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.84 E-value=7e-20 Score=172.53 Aligned_cols=205 Identities=26% Similarity=0.418 Sum_probs=164.7
Q ss_pred cccCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCC---------------CCceeEEeccCCCcEEEEEEcCCCCeEE
Q 008393 326 EEHSSLITDVRFSPSMP--RLATSSFDKTVRVWDADN---------------PGYSLRTFMGHSASVMSLDFHPNKDDLI 388 (567)
Q Consensus 326 ~~h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~~p~~~~li 388 (567)
..|.+.|+.+.-.+-++ +.++=+..|.|+||++.. ...++.++.+|...=+.|+|+|-....+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 35778888887777544 556667789999999852 2345778889999999999998655555
Q ss_pred EEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-CC
Q 008393 389 CSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GE 467 (567)
Q Consensus 389 ~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-g~ 467 (567)
++|.--+.|++|...++..... ...|.+|+..|..|+|+|. ..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd------------------------------------~~Pf~gH~~SVEDLqWSptE~~ 271 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVD------------------------------------QRPFTGHTKSVEDLQWSPTEDG 271 (440)
T ss_pred ccCccccceEeeeeccCceeec------------------------------------CccccccccchhhhccCCccCc
Confidence 5777777888888766432210 0145679999999999995 45
Q ss_pred EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE----EeccccCCe
Q 008393 468 LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM----TLTAHEGLI 542 (567)
Q Consensus 468 ~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~----~~~~h~~~V 542 (567)
+|++|+.| .|+|||++.+....++.. +.|...|+.+.|+....+|++|+.||++.|||++.-+.- .+..|..+|
T Consensus 272 vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pI 350 (440)
T KOG0302|consen 272 VFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPI 350 (440)
T ss_pred eEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCe
Confidence 89999999 999999999877677766 888999999999999999999999999999999865433 888999999
Q ss_pred eEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 543 AALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 543 ~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
++|.|+|.. ..|+++|.|..|.|||
T Consensus 351 tsieW~p~e~s~iaasg~D~QitiWD 376 (440)
T KOG0302|consen 351 TSIEWHPHEDSVIAASGEDNQITIWD 376 (440)
T ss_pred eEEEeccccCceEEeccCCCcEEEEE
Confidence 999999854 5688888999999997
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.2e-19 Score=180.08 Aligned_cols=240 Identities=19% Similarity=0.245 Sum_probs=195.4
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
...+.+|++.|++|...|.|.+|++|+.||+|+||.+.+ +.+++++. ..+.|.|++|+|.+..-++....+..+.|.+
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345679999999999999999999999999999999998 78888776 5678999999998766554444444455554
Q ss_pred CCCCee---------------------------------------e-EEEeCCeeEEEEecCCCEEEEEECC---CeEEE
Q 008393 402 INNGSC---------------------------------------T-RVFKGGTAQMRFQPHLGRYLAAAAE---NVVSI 438 (567)
Q Consensus 402 ~~~~~~---------------------------------------~-~~~~~~~~~~~~~~~~~~l~~~~~d---g~I~i 438 (567)
..-|.. + ......+..+.|+..|.+|++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 332210 0 0112245678899999999888774 48999
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
+++...+...-|.-..+.|.++.|+|...+|++++...|+|||+... ..+..+......|..++++|.|..|++++.
T Consensus 551 HQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs~ 627 (733)
T KOG0650|consen 551 HQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGSY 627 (733)
T ss_pred EecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEecC
Confidence 99988776666666678899999999999999999999999999754 556666667778999999999999999999
Q ss_pred CCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 519 YQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 519 dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|+.+..||+.-.... ++..|...|++++|++.-.++++|+.||++.||
T Consensus 628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 999999999866433 788999999999999999999999999999886
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=2.5e-20 Score=184.18 Aligned_cols=256 Identities=21% Similarity=0.332 Sum_probs=198.0
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC--------CCeeeeeecccCccEEEEEECCCCCeEEEEeCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD--------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~--------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d 350 (567)
...+++.|...|..++|.+-...|++++.||+|++|++. ..+.+.+|++|.++|.|+++.+++..+++|+.|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D 365 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID 365 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence 334899999999999999999999999999999999993 346788999999999999999999999999999
Q ss_pred CcEEEEEcCCC---------CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---Ce--e
Q 008393 351 KTVRVWDADNP---------GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GT--A 416 (567)
Q Consensus 351 g~I~iwd~~~~---------~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~--~ 416 (567)
|+|+.|++... ......+.||.+.|+.++++.....|+ +|+.||+|+.|+...... .+|.. +. .
T Consensus 366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll-scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL-SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred ceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee-eecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 99999965421 133467789999999999999866655 999999999999887665 33321 22 2
Q ss_pred EEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCC-------CCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC
Q 008393 417 QMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGH-------TKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 417 ~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-------~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~ 487 (567)
.+.+.... ...++...-+.-.+++.+....+..+... ...+.-+.++|.+.+.+++.+| .|+++|..++
T Consensus 444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~-- 521 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG-- 521 (577)
T ss_pred eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc--
Confidence 23332222 12223333344444555554444443321 2346778899999999999999 9999999877
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eecccc
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHE 539 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~ 539 (567)
..++....|...++++++.|+|.+|++++.|+.+++|.+....++ ....|.
T Consensus 522 -~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 522 -KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred -ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 788888899999999999999999999999999999999776665 444443
No 165
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.9e-19 Score=161.51 Aligned_cols=245 Identities=16% Similarity=0.253 Sum_probs=183.2
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWD 357 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd 357 (567)
..+.+.+|..+|.|++||+||+.|+|++.|..|.+||+..|.+++.++ ...+|+.+.|+|... ..++.-.+..-.+-+
T Consensus 57 iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~ 135 (405)
T KOG1273|consen 57 IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVID 135 (405)
T ss_pred hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEE
Confidence 445678999999999999999999999999999999999999988887 567899999999544 333333444455666
Q ss_pred cCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----CeeEEEEecCCCEEEEE
Q 008393 358 ADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~ 430 (567)
+..+...+..... ......+..|.+.|++++ +|...|.+.++|..+.+++..++- .+..+.++..+..++.-
T Consensus 136 ~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIi-tGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 136 FSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYII-TGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred ecCCceeeccCCCccccccccccccccCCCCEEE-EecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEe
Confidence 6542221111110 011122335788877555 999999999999999999988764 45678899999999999
Q ss_pred ECCCeEEEEECCCC-------eE--EEEecC--CCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC
Q 008393 431 AAENVVSILDAETQ-------AC--RLSLQG--HTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 431 ~~dg~I~i~d~~~~-------~~--~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
+.|..|+.|+++.- ++ .+++.. .+..-.+++|+.+|.|++.++.. .++||.-..| ..++.+.+.
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~ 291 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGT 291 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCC
Confidence 99999999998631 11 122211 22345689999999999999876 7999999877 667777776
Q ss_pred C-CceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 498 G-NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 498 ~-~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
. .....+.|+|-...|++. ..|.|++|....
T Consensus 292 kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 292 KGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred chhheeecccccceeeeeec-cCCceEEEEeec
Confidence 6 567888999998877776 778999997654
No 166
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4.1e-20 Score=179.40 Aligned_cols=290 Identities=18% Similarity=0.288 Sum_probs=226.8
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCC--CCeEEEEeCCCcE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPS--MPRLATSSFDKTV 353 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~--~~~l~s~s~dg~I 353 (567)
+.....|..|.+.|..+.|...|..|++|+.|..|.+||+..++.+..+. +|...|..-.|-|. ...|++++.||.|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 34556789999999999999999999999999999999999988887765 79999998889884 4589999999999
Q ss_pred EEEEcCCCCce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---------CCeeEEEEec
Q 008393 354 RVWDADNPGYS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---------GGTAQMRFQP 422 (567)
Q Consensus 354 ~iwd~~~~~~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~ 422 (567)
++=.+...++. ...+..|.+.|..++..|+..+-|.+|+.|+.+.-+|++.......+. -....++..|
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 99888764543 345667999999999999999999999999999999998876443332 1345677888
Q ss_pred CCC-EEEEEECCCeEEEEECCCCeE------EEEecC------CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC-
Q 008393 423 HLG-RYLAAAAENVVSILDAETQAC------RLSLQG------HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE- 487 (567)
Q Consensus 423 ~~~-~l~~~~~dg~I~i~d~~~~~~------~~~~~~------h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~- 487 (567)
... .+++++.|-.+++||.+.-.. +.++.. ....|++++|+.++.-|.+...| .|++|.-..+..
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~ 371 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGS 371 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCC
Confidence 765 677888899999999875321 233322 23469999999766545555555 999995543221
Q ss_pred -C-------ceEEE-eecCCCc--eEEEE-EeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEE
Q 008393 488 -G-------ECVHE-LSCNGNK--FHSCV-FHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYV 554 (567)
Q Consensus 488 -~-------~~i~~-~~~~~~~--i~~~~-~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l 554 (567)
+ ..+.. +++|.+. |..+- |-|...|+++|+.-|.|.||+-.+++.+ .+.+...-|+||.-+|--..|
T Consensus 372 ~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvL 451 (559)
T KOG1334|consen 372 EPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVL 451 (559)
T ss_pred CCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchh
Confidence 0 12222 5666543 55554 6788899999999999999999999988 455655689999999999999
Q ss_pred EEEECCCcEEEc
Q 008393 555 ASASHDKFVKLW 566 (567)
Q Consensus 555 ~s~s~Dg~I~iW 566 (567)
|++|-|.-||||
T Consensus 452 AsSGid~DVKIW 463 (559)
T KOG1334|consen 452 ASSGIDHDVKIW 463 (559)
T ss_pred hccCCccceeee
Confidence 999999999999
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=169.16 Aligned_cols=225 Identities=17% Similarity=0.333 Sum_probs=176.3
Q ss_pred CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEEEEECCCCeeeEEEe--C----C
Q 008393 342 PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIRYWSINNGSCTRVFK--G----G 414 (567)
Q Consensus 342 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~----~ 414 (567)
..+|++...|.|++||..+ +..+..++++...+..+.|... +.+.+.+|+.||+|++||++.......+. . .
T Consensus 41 ~~vav~lSngsv~lyd~~t-g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT-GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEeccc-hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 5789999999999999998 7888999999999999999764 67788899999999999999876554443 2 2
Q ss_pred eeEEEEecCCCEEEEEEC----CCeEEEEECCCCeE-EEEe-cCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAA----ENVVSILDAETQAC-RLSL-QGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~----dg~I~i~d~~~~~~-~~~~-~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
..++.....++.+++++. +..|.+||++..+. +..+ ..|...|++|+|+| +-++|++|+-| .|.|||++...
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 233444445555555544 56899999998765 4443 56999999999999 56799999999 99999998765
Q ss_pred CCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCc----------------------------------
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK---------------------------------- 531 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~---------------------------------- 531 (567)
+...+.....+...|..+.|..++ +.|++.+.+++..+|+++.+.
T Consensus 200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~ 279 (376)
T KOG1188|consen 200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKD 279 (376)
T ss_pred chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcc
Confidence 545555555677889999998776 568899999999999887654
Q ss_pred ----------------------------EEEec-cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 ----------------------------TMTLT-AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ----------------------------~~~~~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
...+. +|..-|+++.|.-.+.++.|||+||.|.+|+
T Consensus 280 ~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk 344 (376)
T KOG1188|consen 280 TCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK 344 (376)
T ss_pred eEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence 00122 2556677888887888999999999999995
No 168
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.83 E-value=3e-17 Score=165.83 Aligned_cols=263 Identities=13% Similarity=0.156 Sum_probs=185.1
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEe-CCCcEEEEeCC-CCee--eeeecccCccEEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGG-HDKKAVLWHTD-TLKS--KTNLEEHSSLITDVRF 337 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~-~dg~I~vwd~~-~~~~--~~~l~~h~~~V~~i~f 337 (567)
.+..+++|++...-.++.+..+.. .+....++++|++++|++++ .++.|.+|+++ +++. +.... .......++|
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~ 87 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHIST 87 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEE
Confidence 456788888864445556666653 45677899999999987764 57899999986 3432 22222 2335678999
Q ss_pred CCCCCeEEEEeC-CCcEEEEEcCCCCce---eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE----
Q 008393 338 SPSMPRLATSSF-DKTVRVWDADNPGYS---LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR---- 409 (567)
Q Consensus 338 sp~~~~l~s~s~-dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~---- 409 (567)
+|++++|++++. ++.|.+|++++.+.. +..+. +.....+++++|+++.++++...++.|.+||+.+...+.
T Consensus 88 ~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~ 166 (330)
T PRK11028 88 DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEP 166 (330)
T ss_pred CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCC
Confidence 999999888875 889999999753322 22222 334567889999999888888888999999998743221
Q ss_pred ---EE--eCCeeEEEEecCCCEEEEEEC-CCeEEEEECCC--C--eEEEEecCC------CCCeeEEEEcCCCCEEEEEe
Q 008393 410 ---VF--KGGTAQMRFQPHLGRYLAAAA-ENVVSILDAET--Q--ACRLSLQGH------TKPIDSVCWDPSGELLASVS 473 (567)
Q Consensus 410 ---~~--~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~--~--~~~~~~~~h------~~~V~~l~~sp~g~~l~s~s 473 (567)
.. ..+...+.|+|++.+++++.. ++.|.+||+.. + +.+..+..+ ......+.|+|+|++|+++.
T Consensus 167 ~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 167 AEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred CceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 11 123467899999999988877 89999999973 3 333333321 12234688999999999986
Q ss_pred CC--eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECC
Q 008393 474 ED--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS 528 (567)
Q Consensus 474 ~d--~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~ 528 (567)
.. .|.+|++.... ..+.+..... ......+.|+|+|++|+++.. +++|.+|++.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 53 89999996542 2223333332 234567899999999998876 7899999875
No 169
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=1.2e-20 Score=193.31 Aligned_cols=274 Identities=22% Similarity=0.385 Sum_probs=213.5
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.+.++.|.+|.+.|+|+.|...|.++++|+.|..++||..+++.+.....+|.+.|+.++.+.+...+++++.|..|++|
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-----E--eCCeeEEEEecCCCEEEE
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV-----F--KGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~-----~--~~~~~~~~~~~~~~~l~~ 429 (567)
.+.. +.++..+.+|++.|++|+|+|-- +.+.||++++||.+-.-.+.. + +.-+..+.|...+..+++
T Consensus 260 rl~~-~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~T 333 (1113)
T KOG0644|consen 260 RLPD-GAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLT 333 (1113)
T ss_pred ecCC-CchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccc
Confidence 9998 88899999999999999999863 678899999999881111111 1 112344556666777888
Q ss_pred EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 430 AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 430 ~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
++.++.-..|...... .+...+.-+.++.+- .+.+++-.+ .+.+|++.++ ...+.+.+|...+..+.++
T Consensus 334 gs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 334 GSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVH 404 (1113)
T ss_pred ccCCcccccchhhHhh------hhccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeec
Confidence 8888877766654321 122222222222222 345555566 8999999877 6677888899999999999
Q ss_pred CCCCeE-EEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 508 PTYPSL-LVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 508 p~~~~l-~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|-+..+ ..++.||...|||+-.+..+ ...+| +.+....||+||..++....-|.+.|.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL 465 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence 977655 46788999999999988766 33454 456677999999888776666777664
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.82 E-value=2.5e-17 Score=166.49 Aligned_cols=262 Identities=12% Similarity=0.191 Sum_probs=181.5
Q ss_pred EEEeCCCcEEEEeCCC-Ce--eeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCce--eEEeccCCCcEE
Q 008393 303 ATGGHDKKAVLWHTDT-LK--SKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGYS--LRTFMGHSASVM 376 (567)
Q Consensus 303 asg~~dg~I~vwd~~~-~~--~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~~--~~~~~~h~~~V~ 376 (567)
++...++.|.+|++.+ ++ .+..+. +......++++|++++|++++ .++.|.+|+++..+.. +... ...+...
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~p~ 83 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGSPT 83 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCCce
Confidence 4446789999999964 33 444554 345677899999999987765 4788999999743322 2222 2334567
Q ss_pred EEEEcCCCCeEEEEEeCCCcEEEEECCCC-e---eeEEEeC--CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEE-
Q 008393 377 SLDFHPNKDDLICSCDGDGEIRYWSINNG-S---CTRVFKG--GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRL- 448 (567)
Q Consensus 377 ~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~---~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~- 448 (567)
.++|+|+++.++++...++.|.+|++.+. . .+..+.+ +...+.++|++..++++.. ++.|.+||+.+...+.
T Consensus 84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 89999999988877767999999999742 2 2233322 4566789999999877666 6899999997632221
Q ss_pred ------EecCCCCCeeEEEEcCCCCEEEEEeC-C-eEEEEeCCCC-CCCceEEEeecC------CCceEEEEEeCCCCeE
Q 008393 449 ------SLQGHTKPIDSVCWDPSGELLASVSE-D-SVRVWTVGSG-SEGECVHELSCN------GNKFHSCVFHPTYPSL 513 (567)
Q Consensus 449 ------~~~~h~~~V~~l~~sp~g~~l~s~s~-d-~I~iwd~~~~-~~~~~i~~~~~~------~~~i~~~~~sp~~~~l 513 (567)
... .......++|+|+|++|+++.. + .|.+|++... ...+.+..+... ......+.++|++++|
T Consensus 164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l 242 (330)
T PRK11028 164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL 242 (330)
T ss_pred cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence 111 1234578999999999988886 4 9999999742 122334433321 1123358899999999
Q ss_pred EEEEc-CCeEEEEECCCCc-EEEeccc---cCCeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 514 LVIGC-YQSLELWNMSENK-TMTLTAH---EGLIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 514 ~~~~~-dg~I~iwd~~~~~-~~~~~~h---~~~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
+++.. ++.|.+|++.... ...+..+ ......+.|+|+|++|+++.. +++|.+|+
T Consensus 243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 99864 5799999986532 2222222 235678999999999998775 88999984
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.82 E-value=2.6e-18 Score=165.36 Aligned_cols=233 Identities=15% Similarity=0.348 Sum_probs=177.6
Q ss_pred EEEEECC-------CCCeEEEEeCCCcEEEEEcCCCC--ceeE------------------EeccCCCcEEEEEEcCCCC
Q 008393 333 TDVRFSP-------SMPRLATSSFDKTVRVWDADNPG--YSLR------------------TFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 333 ~~i~fsp-------~~~~l~s~s~dg~I~iwd~~~~~--~~~~------------------~~~~h~~~V~~l~~~p~~~ 385 (567)
.|+.|.. .|+|+|.|+.|..|.|||++-.. .+.. .-.+|+..|.+|.|+..-.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4666643 36799999999999999986211 1111 1236899999999999999
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCE-EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGR-YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
+++++|+.|.+|++||+.++++...+. ..+.++.|+|.... ++.|+.|++|.++|.+........-...+.|-.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~ 336 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVA 336 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEE
Confidence 999999999999999999999988876 46788999998754 66777799999999994322111111346789999
Q ss_pred EcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCCCcEEEeccc
Q 008393 462 WDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSENKTMTLTAH 538 (567)
Q Consensus 462 ~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~~~~~~~~~h 538 (567)
|.+... .++++.+| +|+-+|++... +++.++..|...|.+++++..-+ ++++++.++.|++|++..........|
T Consensus 337 w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~ 414 (463)
T KOG0270|consen 337 WDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEH 414 (463)
T ss_pred ecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccc
Confidence 999665 45555566 99999998653 89999999999999999998665 567788899999999976554433333
Q ss_pred c---CCeeEEEEecCCC-EEEEEECCCcEEEcC
Q 008393 539 E---GLIAALAVSTETG-YVASASHDKFVKLWK 567 (567)
Q Consensus 539 ~---~~V~~l~~spdg~-~l~s~s~Dg~I~iWd 567 (567)
. +...|+++.|+-. +|+.||..+.++|||
T Consensus 415 ~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd 447 (463)
T KOG0270|consen 415 SFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWD 447 (463)
T ss_pred cccccceeecccCCCcceEEEecCccceEEEee
Confidence 2 2356677777664 577888888899997
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=3.6e-18 Score=170.35 Aligned_cols=134 Identities=14% Similarity=0.216 Sum_probs=109.8
Q ss_pred CEEEEEECCCeEEEEECCCC-------eEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 425 GRYLAAAAENVVSILDAETQ-------ACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~-------~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.++++++.||.|++|.+..+ .+...+..|...|+++.|+| ..+.|++++.| +|++||+.+. +....+.
T Consensus 641 ~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~---~~~~~l~ 717 (1012)
T KOG1445|consen 641 ERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA---KLYSRLV 717 (1012)
T ss_pred HHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhh---hhhheec
Confidence 46788888999999987653 44567788999999999999 56789999999 9999999877 5667889
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc---ccCCeeEEEEecCCCEEEEEECCC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA---HEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~---h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
+|.+.|..++|+|+|+.+++.+.||+|++|+-+.++.....+ ....-..+.|.-||++|++.|.|.
T Consensus 718 gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 718 GHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred cCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 999999999999999999999999999999998776542221 112334577888999998888774
No 173
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=4.7e-18 Score=155.00 Aligned_cols=274 Identities=22% Similarity=0.286 Sum_probs=187.9
Q ss_pred eEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCC-------CcEEEEeCCC---
Q 008393 250 VESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHD-------KKAVLWHTDT--- 318 (567)
Q Consensus 250 v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~d-------g~I~vwd~~~--- 318 (567)
..+|+..-...-.|..+.+.+...+...-.-+.|..|.+.|+.++-+| |.++|+++..+ ..+.||.+..
T Consensus 26 ~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~ 105 (370)
T KOG1007|consen 26 HICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLG 105 (370)
T ss_pred ceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccC
Confidence 345554444444445555555555444444567888999999999999 55667776542 3578998753
Q ss_pred ------Ceeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-----cCCCcEEEEEEcCCCCe
Q 008393 319 ------LKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-----GHSASVMSLDFHPNKDD 386 (567)
Q Consensus 319 ------~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~~p~~~~ 386 (567)
.+++..+. .+-+.|.|+.|.|++..|++-. |..|.+|+++.....+..+. ++....++-+|+|.
T Consensus 106 ~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspH--- 181 (370)
T KOG1007|consen 106 QSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPH--- 181 (370)
T ss_pred ccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCC---
Confidence 23444454 5666899999999999988877 77799999997544232221 12333444444441
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCC
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS 465 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~ 465 (567)
..+..++...++++..||+++.++...+. .|...|..+.|.|+
T Consensus 182 ------------------------------------Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn 225 (370)
T KOG1007|consen 182 ------------------------------------HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN 225 (370)
T ss_pred ------------------------------------CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCC
Confidence 22333344444555555555544444443 47788999999998
Q ss_pred CC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEECCC-------------
Q 008393 466 GE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWNMSE------------- 529 (567)
Q Consensus 466 g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~------------- 529 (567)
.. +|++|++| .|+|||.+.. ...+.++.+|...++++.|+|.. .+|++++.|..|.+|....
T Consensus 226 kq~~lvt~gDdgyvriWD~R~t--k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 226 KQHILVTCGDDGYVRIWDTRKT--KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred ceEEEEEcCCCccEEEEeccCC--CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 76 67778888 9999999854 36788999999999999999965 5678888999999995421
Q ss_pred -----------------CcEEEeccccCCeeEEEEecCCCE-EEEEECCCcEEE
Q 008393 530 -----------------NKTMTLTAHEGLIAALAVSTETGY-VASASHDKFVKL 565 (567)
Q Consensus 530 -----------------~~~~~~~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~i 565 (567)
+...++..|+..|.+++|+.-..+ +|+-+.||.|.|
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 112266789999999999876654 678899999876
No 174
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=3.6e-18 Score=158.48 Aligned_cols=240 Identities=20% Similarity=0.334 Sum_probs=182.3
Q ss_pred cCCCCeEEEEEcCCC----CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcC
Q 008393 285 ASTSKVICCHFSSDG----KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg----~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~ 359 (567)
.|....+.++|+-|. -+||+||.-|.|+|.|+.++++...+.+|...|+.|.|.|+. ++|++++.|.+|++|++.
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 367777788887653 378999999999999999999999999999999999999975 589999999999999999
Q ss_pred CCCceeEEe---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE------eC-----------------
Q 008393 360 NPGYSLRTF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF------KG----------------- 413 (567)
Q Consensus 360 ~~~~~~~~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~------~~----------------- 413 (567)
+ ..++..+ .+|.+.|.+++|+.++. .|++|+.|..|++|++...+....+ ..
T Consensus 167 ~-~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 167 T-DVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred C-CeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 8 6666655 57999999999999988 5559999999999999854321111 00
Q ss_pred --------CeeEEEEecCCCEEEEEECCCeEEEEECC-CCe-------------EEEEecCCCCCeeEE--EEcCCCCEE
Q 008393 414 --------GTAQMRFQPHLGRYLAAAAENVVSILDAE-TQA-------------CRLSLQGHTKPIDSV--CWDPSGELL 469 (567)
Q Consensus 414 --------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~-------------~~~~~~~h~~~V~~l--~~sp~g~~l 469 (567)
.+.++.| -++.+++-+.++.|..|... -.+ .+..+.-....|+-| +|++-+++|
T Consensus 245 st~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 0111111 24677888889999999872 111 222333333445544 456678899
Q ss_pred EEEeCC-eEEEEeCCCCCCCceEE-EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 470 ASVSED-SVRVWTVGSGSEGECVH-ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~~~~i~-~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
|.|... .|.+||++..+...+-. ........|...+|+.|+..|+..+.|++|.-||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999988 99999998875533222 222345668999999999999999999999999864
No 175
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=1.3e-17 Score=158.20 Aligned_cols=227 Identities=15% Similarity=0.281 Sum_probs=181.0
Q ss_pred eeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 323 TNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 323 ~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
-.+.+|++.|..++|+| +...||+|+.|.+|.||.+-..+ .++..+.+|...|--+.|+|...+++++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34569999999999999 55689999999999999987533 357788999999999999999999999999999
Q ss_pred cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC-eeEEEEcCCCCEEEEE
Q 008393 396 EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-IDSVCWDPSGELLASV 472 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp~g~~l~s~ 472 (567)
.|.+||+.+++.+..+.. -+..+.|+.+|..+++++.|..|+|||.++++.+..-.+|.+. -..+.|-.+|+++.+|
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 999999999998777663 4678899999999999999999999999999999988888763 3456688889866666
Q ss_pred eC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEE--Ee--ccccCCee
Q 008393 473 SE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TL--TAHEGLIA 543 (567)
Q Consensus 473 s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~~--~~h~~~V~ 543 (567)
-. + .+-+||..+...+..+.++.. .+.|.---|.+|...|+.+| .|+.|+.|.+.....+ .+ .....+-.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQR 313 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQR 313 (472)
T ss_pred cccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccc
Confidence 43 3 699999988777666666654 45566667888888776655 5789999999877633 22 22334455
Q ss_pred EEEEecC
Q 008393 544 ALAVSTE 550 (567)
Q Consensus 544 ~l~~spd 550 (567)
.+.|-|.
T Consensus 314 G~g~mPK 320 (472)
T KOG0303|consen 314 GMGFMPK 320 (472)
T ss_pred ccccccc
Confidence 5666554
No 176
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.80 E-value=1.5e-16 Score=159.67 Aligned_cols=204 Identities=14% Similarity=0.268 Sum_probs=157.7
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe--------eeeee--c----------------------
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK--------SKTNL--E---------------------- 326 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~--------~~~~l--~---------------------- 326 (567)
...++++|.+.|+|++|+.||+.+|+|+.|+.|.+|.-.-.- .+... .
T Consensus 45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK 124 (1081)
T KOG1538|consen 45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK 124 (1081)
T ss_pred cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence 557789999999999999999999999999999999754211 11100 0
Q ss_pred -----ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCCC----CeEEEEEeCCCc
Q 008393 327 -----EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPNK----DDLICSCDGDGE 396 (567)
Q Consensus 327 -----~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~~----~~li~s~~~dg~ 396 (567)
.....|.+++|..||.+|+.|-.+|+|.|-+-....+ .+..-.+.+.+|.+++|+|.. ..++++.....+
T Consensus 125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 0234578889999999999999999999997654222 222333577899999999863 346667777888
Q ss_pred EEEEECCCCeee--EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 397 IRYWSINNGSCT--RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 397 I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
+.+|.+.....- +.+.-...++.+.++|.++++|+.|+.+++|-- .|-.+-++.....+|+.++..|++.+++.|+.
T Consensus 205 LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 205 LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 888877644332 344556778999999999999999999999864 45555566667789999999999999999999
Q ss_pred C-eEEEEeCC
Q 008393 475 D-SVRVWTVG 483 (567)
Q Consensus 475 d-~I~iwd~~ 483 (567)
| +|..|++.
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 9 99999875
No 177
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.80 E-value=1.8e-17 Score=151.29 Aligned_cols=277 Identities=20% Similarity=0.325 Sum_probs=197.1
Q ss_pred CCCCCcCeEEEecCCCcccc----CCCceeeeCCCcchhhcccccccCCCCCCceEEeeccCCCC-CCCCCccceeccCC
Q 008393 200 SGTTSKPLMMFGTDGAGTLT----SPSNQLWDDKDLELRADMDRLVEDGSLDDNVESFLSHDDTD-PRDAGGRGMDVSQG 274 (567)
Q Consensus 200 ~~~~~~~~~~~~~dg~~~~~----~~~~~~Wd~~~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~d~~~~~~~~~~~ 274 (567)
........+.|.+.+..++. .....+|+....- .-.+ +......+..+ ..-....+|.+.+.
T Consensus 37 K~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P---~d~~----------ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 37 KEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSP---FDQR----------ILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred CCcceeEEEEecCccchhhhhhhhcCCcceehhhcCC---CCCc----------eEEEEEeccCCCcceeeEEEEecccc
Confidence 34455667777777666544 3455788876531 1111 11111111111 11223456665543
Q ss_pred ------ccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee-eeeec-----ccCccEEEEEECC--
Q 008393 275 ------FSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS-KTNLE-----EHSSLITDVRFSP-- 339 (567)
Q Consensus 275 ------~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~-~~~l~-----~h~~~V~~i~fsp-- 339 (567)
.+++.+..|. .+-+.|.|+.|.|++..||+-. |..|.+|+++.... +..+. +|....++-+|+|
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH 182 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH 182 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC
Confidence 3356666776 6778999999999999998876 89999999987665 33332 3566788889998
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR 419 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~ 419 (567)
+++.+++.+ |+++..||+++..+....-..|...|..++|+|+..+++++|+.||.|+|||.+..
T Consensus 183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t-------------- 247 (370)
T KOG1007|consen 183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT-------------- 247 (370)
T ss_pred ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC--------------
Confidence 676776664 78899999998666666667899999999999999999999999999999998753
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCC-----------
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGS----------- 486 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~----------- 486 (567)
..++..+.+|...|+++.|+|. ..+|++++.| .|.+|...+-.
T Consensus 248 ------------------------k~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~de 303 (370)
T KOG1007|consen 248 ------------------------KFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDE 303 (370)
T ss_pred ------------------------CccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccc
Confidence 2445578889999999999994 5688888888 89888764211
Q ss_pred ----------C-----CceEEEeecCCCceEEEEEeCCCCeEEE-EEcCCeEEEEECCC
Q 008393 487 ----------E-----GECVHELSCNGNKFHSCVFHPTYPSLLV-IGCYQSLELWNMSE 529 (567)
Q Consensus 487 ----------~-----~~~i~~~~~~~~~i~~~~~sp~~~~l~~-~~~dg~I~iwd~~~ 529 (567)
. ...+.++..|+..|++++|+.-..++++ -+.||.+.|=.+..
T Consensus 304 se~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 304 SESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 0 1124567788999999999998887655 57889888876654
No 178
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=2.4e-17 Score=146.97 Aligned_cols=227 Identities=19% Similarity=0.244 Sum_probs=170.1
Q ss_pred cEEEEEECCCCCeEEEEeCCCcEEEEEcCC---------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE
Q 008393 331 LITDVRFSPSMPRLATSSFDKTVRVWDADN---------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS 401 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~---------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd 401 (567)
.|.+-+|+|.+++|+.|..+|.|.++.+.+ ++..+..+.+|.++|+.++|+. .++++|+ ||.|+-|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEee
Confidence 356668999999999999999999998863 2345566789999999999993 3454766 69999998
Q ss_pred CCCCeee----E--EE----------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 402 INNGSCT----R--VF----------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 402 ~~~~~~~----~--~~----------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
.+..... . .. -..++.+...|..+.++.++.|+.++.||+++++....+++|++.|.++.--..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~ 167 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA 167 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence 7653321 0 00 125678889999999999999999999999999999999999999999998555
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA 537 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~ 537 (567)
...+++|++| ++||||.++.+....+...+.. +..|-+++. +..++++| ....+.+|.++..+......
T Consensus 168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCG-gGp~lslwhLrsse~t~vfp 244 (325)
T KOG0649|consen 168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCG-GGPKLSLWHLRSSESTCVFP 244 (325)
T ss_pred CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEec-CCCceeEEeccCCCceEEEe
Confidence 5567899999 9999999988554444433221 223444444 44455554 44589999999999887777
Q ss_pred ccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 538 HEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 538 h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
-.+.|..+.|..| .+++++..+.|.-|
T Consensus 245 ipa~v~~v~F~~d--~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 245 IPARVHLVDFVDD--CVLIGGEGNHVQSY 271 (325)
T ss_pred cccceeEeeeecc--eEEEeccccceeee
Confidence 7778888888643 56667755555444
No 179
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.4e-18 Score=171.84 Aligned_cols=243 Identities=21% Similarity=0.296 Sum_probs=179.4
Q ss_pred eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC-------CCceeEEeccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN-------PGYSLRTFMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
....++..|.+.|+.+.|.+....|++++.||+|++|++.. .-+++.+|.+|.++|.|+++.+++..++ +|+
T Consensus 285 ~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~y-sgg 363 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCY-SGG 363 (577)
T ss_pred ceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEE-eec
Confidence 34457788999999999999999999999999999999932 1246789999999999999999987655 999
Q ss_pred CCCcEEEEECCCCe----------eeEEEeC---CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC--CCCe
Q 008393 393 GDGEIRYWSINNGS----------CTRVFKG---GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH--TKPI 457 (567)
Q Consensus 393 ~dg~I~iwd~~~~~----------~~~~~~~---~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h--~~~V 457 (567)
.||+|+.|++.... ....+.+ .+..++++....+|+.++.||++++|+...... .++... .+.-
T Consensus 364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYP 442 (577)
T ss_pred cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCc
Confidence 99999999765211 1122333 345678999999999999999999999877665 233321 1223
Q ss_pred eEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeec-------CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 458 DSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSC-------NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~-------~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.++.+-...-.+..++.. .--++++... ..+..+.. ....+..++++|.....+++..|+.|+++|..
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~---s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVV---SDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhh---hheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 445553332111111111 2223333222 12222111 12346778999999999999999999999999
Q ss_pred CCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 ENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 ~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++.+ ...+|...++++++.|+|.+|+++++||.|++|+
T Consensus 520 ~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 520 TGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 99988 7889999999999999999999999999999995
No 180
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2.2e-17 Score=152.91 Aligned_cols=231 Identities=16% Similarity=0.286 Sum_probs=175.1
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce------------eEEeccCCCcEEEEEEc-------CCCCeEEEEEe
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS------------LRTFMGHSASVMSLDFH-------PNKDDLICSCD 392 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~------------~~~~~~h~~~V~~l~~~-------p~~~~li~s~~ 392 (567)
...+.|+|||..|++.+.|..+.+|++...... ..........|...+|. |+ ..++++.+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLFAVSS 130 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCc-cceeeecc
Confidence 456799999999999999999999988531110 01111234667888886 44 45777889
Q ss_pred CCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEECCCeEEEEEC-CCCeE--EEEec-----CCCCC
Q 008393 393 GDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAAENVVSILDA-ETQAC--RLSLQ-----GHTKP 456 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~dg~I~i~d~-~~~~~--~~~~~-----~h~~~ 456 (567)
.+.-|++||.-+|+....+.. ...+++|+|+|..|+++ ....|++||+ +.++. +.... +..+-
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gi 209 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGI 209 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccce
Confidence 999999999999998877653 35679999998777664 5789999999 55532 22222 23677
Q ss_pred eeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEE
Q 008393 457 IDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM 533 (567)
Q Consensus 457 V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~ 533 (567)
|.+++|+| +.+.++.++.. .+-||.-... ..+..+.+|.+.|+.+.|.++|+.|++|+. +..|..||++.....
T Consensus 210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~---~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR---RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eeeeeccCCCCcceeeecccceeeeEecCCC---CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 89999999 45599999988 7777766444 667778899999999999999999999986 469999999876543
Q ss_pred --EeccccC-CeeE--EEEecCCCEEEEEECCCcEEEcC
Q 008393 534 --TLTAHEG-LIAA--LAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 --~~~~h~~-~V~~--l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+..|.+ .-.. +...|++++|++|+.||.|++||
T Consensus 287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwd 325 (406)
T KOG2919|consen 287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWD 325 (406)
T ss_pred hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEe
Confidence 5556655 2223 34468999999999999999997
No 181
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=5.1e-17 Score=149.64 Aligned_cols=235 Identities=23% Similarity=0.359 Sum_probs=174.1
Q ss_pred CCCCCCCcccee-ccCCccceeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCC---------CCeeeeeec
Q 008393 259 TDPRDAGGRGMD-VSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTD---------TLKSKTNLE 326 (567)
Q Consensus 259 ~~~~d~~~~~~~-~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~---------~~~~~~~l~ 326 (567)
+...|..+++|+ ......+......+.|.+.|..+.|.+ -|+.+|+++.|+++.||.-. ......++.
T Consensus 30 tCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~ 109 (361)
T KOG2445|consen 30 TCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV 109 (361)
T ss_pred eccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee
Confidence 445677889999 555568889999999999999999976 58999999999999999752 123455677
Q ss_pred ccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCcee-----EEe-------ccCCCcEEEEEEcCCC--CeEEEE
Q 008393 327 EHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGYSL-----RTF-------MGHSASVMSLDFHPNK--DDLICS 390 (567)
Q Consensus 327 ~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~~~-----~~~-------~~h~~~V~~l~~~p~~--~~li~s 390 (567)
.....|++|.|.|. |-.||+++.||.||||+.-...... ..+ ..+.....|+.|++.. ..+|+.
T Consensus 110 DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAv 189 (361)
T KOG2445|consen 110 DSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAV 189 (361)
T ss_pred cCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEE
Confidence 78889999999995 6689999999999999986533221 111 1345566677776532 234444
Q ss_pred EeCC-----CcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC
Q 008393 391 CDGD-----GEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS 465 (567)
Q Consensus 391 ~~~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~ 465 (567)
|+.+ +.++||....+ .+....+.++.+|..+|+.|+|.|+
T Consensus 190 gs~e~a~~~~~~~Iye~~e~-----------------------------------~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 190 GSDEDAPHLNKVKIYEYNEN-----------------------------------GRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred EcccCCccccceEEEEecCC-----------------------------------cceeeeehhcCCCCCcceeeeeccc
Confidence 4433 24444433221 1122344567789999999999995
Q ss_pred ----CCEEEEEeCCeEEEEeCCCC-----------------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 466 ----GELLASVSEDSVRVWTVGSG-----------------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 466 ----g~~l~s~s~d~I~iwd~~~~-----------------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
-.+||+++.|.|+||.++.. -..+.+..+..|...+..+.|+-.|..|.+.|.||.|++
T Consensus 235 ~Gr~y~~lAvA~kDgv~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRL 314 (361)
T KOG2445|consen 235 IGRSYHLLAVATKDGVRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRL 314 (361)
T ss_pred cCCceeeEEEeecCcEEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeee
Confidence 34888999889999999731 123456778899999999999999999999999999999
Q ss_pred EECC
Q 008393 525 WNMS 528 (567)
Q Consensus 525 wd~~ 528 (567)
|...
T Consensus 315 Wkan 318 (361)
T KOG2445|consen 315 WKAN 318 (361)
T ss_pred hhhh
Confidence 9764
No 182
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.79 E-value=3.5e-17 Score=174.68 Aligned_cols=290 Identities=19% Similarity=0.235 Sum_probs=207.4
Q ss_pred eeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-------CeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 278 KEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDT-------LKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~-------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
..+..+..|...|..++.+++. .+|++|+.||+|++|+... .+...++......+.++.+.+.+..+|+++.
T Consensus 1039 ~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1039 ILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred eEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 4678889999999999998866 9999999999999999853 2333344445778999999999999999999
Q ss_pred CCcEEEEEcCCCCc------eeEEeccC-CC-cEEEEEEcCCCC-eEEEEEeCCCcEEEEECCCCeeeEEEe-----CCe
Q 008393 350 DKTVRVWDADNPGY------SLRTFMGH-SA-SVMSLDFHPNKD-DLICSCDGDGEIRYWSINNGSCTRVFK-----GGT 415 (567)
Q Consensus 350 dg~I~iwd~~~~~~------~~~~~~~h-~~-~V~~l~~~p~~~-~li~s~~~dg~I~iwd~~~~~~~~~~~-----~~~ 415 (567)
||.|++.+++.... ..+....+ .+ .|...+|..... .+++.+...+.|..||++.......++ |-+
T Consensus 1119 DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~v 1198 (1431)
T KOG1240|consen 1119 DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLV 1198 (1431)
T ss_pred CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccce
Confidence 99999999975111 11111112 22 333444443333 367778889999999999877665543 467
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec-CCCCCeeEEEEcCC---CCEEEEEeC-C--eEEEEeCCCCCCC
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ-GHTKPIDSVCWDPS---GELLASVSE-D--SVRVWTVGSGSEG 488 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~-~h~~~V~~l~~sp~---g~~l~s~s~-d--~I~iwd~~~~~~~ 488 (567)
+.++.+|.+.+++.|+..|.+.+||++-+.++..+. ++..+|..++.+|- ..+.++++. . .|.+|++.++...
T Consensus 1199 TSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~ 1278 (1431)
T KOG1240|consen 1199 TSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ 1278 (1431)
T ss_pred eEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcce
Confidence 899999999999999999999999999998887665 24577888877763 245555554 3 8999999987322
Q ss_pred ceEEEe----------e------cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-------------------
Q 008393 489 ECVHEL----------S------CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------------------- 533 (567)
Q Consensus 489 ~~i~~~----------~------~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~------------------- 533 (567)
..+..- . .+......+.+...+..+++|+.|..|+.||....+..
T Consensus 1279 ~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~ 1358 (1431)
T KOG1240|consen 1279 TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD 1358 (1431)
T ss_pred EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc
Confidence 222111 0 01112233455556678999999999999997543200
Q ss_pred --------------------------------------EeccccCCeeEEEEecC-CCEEEEEECCCcEEEcC
Q 008393 534 --------------------------------------TLTAHEGLIAALAVSTE-TGYVASASHDKFVKLWK 567 (567)
Q Consensus 534 --------------------------------------~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iWd 567 (567)
.-..|..+|+++++... -.+|++++.||.|+||+
T Consensus 1359 ~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1359 LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11247778888887543 35899999999999996
No 183
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.78 E-value=1.6e-17 Score=151.70 Aligned_cols=239 Identities=20% Similarity=0.369 Sum_probs=179.0
Q ss_pred ccCCCCeEEEEEcCCCC-----eEEEEeCCCcEEEEeCCCCeeee----ee-----cccCccEEEEEECC-CCCeEEEEe
Q 008393 284 RASTSKVICCHFSSDGK-----LLATGGHDKKAVLWHTDTLKSKT----NL-----EEHSSLITDVRFSP-SMPRLATSS 348 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~-----~lasg~~dg~I~vwd~~~~~~~~----~l-----~~h~~~V~~i~fsp-~~~~l~s~s 348 (567)
-.|.-+++.+-|.|+.+ +||+. +..+++|.+...+... .+ ..+..++++..|+. +-++|.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 36888999999999873 56665 4589999987422211 11 24677899999987 566899999
Q ss_pred CCCcEEEEEcCCC--CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eC-----CeeEEEE
Q 008393 349 FDKTVRVWDADNP--GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG-----GTAQMRF 420 (567)
Q Consensus 349 ~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~-----~~~~~~~ 420 (567)
-|-+..|||++++ +.....+..|...|..|+|...+..+|++++.||.||+||++..+.-..+ ++ ....++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 9999999999983 33456778999999999999988999999999999999999987654443 22 2345677
Q ss_pred ecCCCEEEEEE-C-CCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCC---CceEE
Q 008393 421 QPHLGRYLAAA-A-ENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSE---GECVH 492 (567)
Q Consensus 421 ~~~~~~l~~~~-~-dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~---~~~i~ 492 (567)
++....+++.. . ...|.|.|++.. .++..+.+|.+.|+.|+|.|. ...|+++++| .+.+||+..... ...+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 77766555433 3 468999999985 788899999999999999994 5689999999 999999975422 11222
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
.+. .+..|..+.|++...--++...++++.+.
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL 362 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL 362 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence 222 56779999999755444444444555543
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.5e-17 Score=173.08 Aligned_cols=278 Identities=15% Similarity=0.227 Sum_probs=206.7
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc---CccEEEEEECC--CCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH---SSLITDVRFSP--SMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h---~~~V~~i~fsp--~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..+-..+.|+|-...++++...-.|+|||.+.++....+..+ ...|+.+.+-. |..++++|+.||.|+||+--..
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 335567888998889999988889999999999988777644 35688888865 4558999999999999975432
Q ss_pred C----ceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----eEEE-EecCCC
Q 008393 362 G----YSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----AQMR-FQPHLG 425 (567)
Q Consensus 362 ~----~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~~~~-~~~~~~ 425 (567)
. +.+..+.+ ..+.-.-++|.....+|+++| +-..|+|||.....++..+..+. +.+. -...++
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence 2 22322221 111124466777767777554 48899999999988887776432 2232 234468
Q ss_pred EEEEEECCCeEEEEECCCC---eEEEEecCCCCC--eeEEEEcCCCCE-EEEEeCC-eEEEEeCCCCCCCceEEEeecC-
Q 008393 426 RYLAAAAENVVSILDAETQ---ACRLSLQGHTKP--IDSVCWDPSGEL-LASVSED-SVRVWTVGSGSEGECVHELSCN- 497 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~---~~~~~~~~h~~~--V~~l~~sp~g~~-l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~- 497 (567)
.+++|..||.|++||.+.. ..+...+.|... |..+.+-+.|-- |++|+.+ .|++||++.... .....+..+
T Consensus 1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence 8999999999999999875 356677788887 999999886654 8889888 999999997522 222222222
Q ss_pred --CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-------ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 498 --GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-------HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 498 --~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-------h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++..+++..|++...+++|+. +.|+||++.......+.. ..+.+.|++|+|-.-+||+|+.|.+|.||.
T Consensus 1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 335899999999998888888 999999998776553332 235689999999999999999999999983
No 185
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.5e-17 Score=156.33 Aligned_cols=202 Identities=19% Similarity=0.314 Sum_probs=161.1
Q ss_pred eeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-------eeeeeecccCccEEEEEECCC-CCeEEEEeC
Q 008393 279 EANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTL-------KSKTNLEEHSSLITDVRFSPS-MPRLATSSF 349 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~-------~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~ 349 (567)
..-.+.||+++|..++|+| +...||+|+.|.+|.||.+... +.+..|.+|...|.-++|+|. .+.|++++.
T Consensus 73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccC
Confidence 3456789999999999999 5578999999999999998643 456788899999999999996 458999999
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHLG 425 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~~ 425 (567)
|.+|.+|++.+ +..+.++. |...|+++.|+.+|. ++++.+.|..|+|||.++++.+..-.++ ...+.|-.++.
T Consensus 153 Dn~v~iWnv~t-geali~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~ 229 (472)
T KOG0303|consen 153 DNTVSIWNVGT-GEALITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK 229 (472)
T ss_pred CceEEEEeccC-CceeeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc
Confidence 99999999999 55555666 999999999999987 5558899999999999999988775432 34466777777
Q ss_pred EEEEEEC----CCeEEEEECCCCe---EEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC
Q 008393 426 RYLAAAA----ENVVSILDAETQA---CRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 426 ~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~ 485 (567)
+++.+. +..+.+||....+ ....+. ..+.|.---|++|.++|+.++.+ .|+.|.+...
T Consensus 230 -i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 230 -IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred -eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 555443 6789999987643 223333 34556666688899988888866 8999999754
No 186
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.3e-15 Score=144.00 Aligned_cols=231 Identities=17% Similarity=0.295 Sum_probs=173.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~ 364 (567)
...+..+.|+.|...|..|+.|| .++|..+..............|..+-|+.. ++|..+.+ ..++++++.. +..
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-KTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEccc-Cce
Confidence 45677788999999999998887 467777765554444444455666777654 66665554 3489999886 444
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----eeEEEEecCC--CEEEEEEC--CCeE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----TAQMRFQPHL--GRYLAAAA--ENVV 436 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----~~~~~~~~~~--~~l~~~~~--dg~I 436 (567)
+..+. ....|.++.++.+ +|+ ++-++ .|+|||+++.+.++++..- ...++++++. .+++.-+. .|.|
T Consensus 81 ICe~~-fpt~IL~VrmNr~--RLv-V~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNRK--RLV-VCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred EEEEe-cCCceEEEEEccc--eEE-EEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence 44333 5677999999854 455 55544 4999999999998877532 2234455544 45655433 6899
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeCCCCe
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHPTYPS 512 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~~ 512 (567)
.+||+.+-+.+..+..|++.+-+++|+++|.+||++++. -||||.+.++ ..+.++... ...|.+++|++++.+
T Consensus 156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence 999999999999999999999999999999999999988 6999999877 556666533 345889999999999
Q ss_pred EEEEEcCCeEEEEECCC
Q 008393 513 LLVIGCYQSLELWNMSE 529 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~ 529 (567)
|.+.+..++|.||.+++
T Consensus 233 L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEecCCCeEEEEEecc
Confidence 99999999999998864
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2.3e-16 Score=164.08 Aligned_cols=280 Identities=17% Similarity=0.285 Sum_probs=210.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDT----LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
..|+-.++|.+++|+++++|+|..||.|.+|.--. ......+.-|...|.++.|+++|.+|++|+..|.+.+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777899999999999999999999999996322 23345677899999999999999999999999999999999
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------------CCeeEEEEecCCC
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------------GGTAQMRFQPHLG 425 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~ 425 (567)
+++ ...+..-.+.|..+.++||++.+. ....|+.|.+....+......+. +-...++++|..+
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 855 356667789999999999987555 66679999999886655443332 2245678999888
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEecC-----C------CCCeeEEEEcCCCCEEEEEeC----------C-eEEEEeCC
Q 008393 426 RYLAAAAENVVSILDAETQACRLSLQG-----H------TKPIDSVCWDPSGELLASVSE----------D-SVRVWTVG 483 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~~~-----h------~~~V~~l~~sp~g~~l~s~s~----------d-~I~iwd~~ 483 (567)
.++..+..+.|.+||+-+.+.+..+.. + ...++.++.+-.|.++++.-. . .+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999998876665531 1 234677888888999998741 2 58899876
Q ss_pred CCCCCceE--EEeecCCCceEEEEEe-CCCC-eEEEEEcCCeEEEEECCCCc----------EE-EeccccCCeeEEEEe
Q 008393 484 SGSEGECV--HELSCNGNKFHSCVFH-PTYP-SLLVIGCYQSLELWNMSENK----------TM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 484 ~~~~~~~i--~~~~~~~~~i~~~~~s-p~~~-~l~~~~~dg~I~iwd~~~~~----------~~-~~~~h~~~V~~l~~s 548 (567)
.....-.+ .....|+..+...++. +... ..++++.||.++||-+...+ +. .-..|..++++++|+
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 54332222 2233566655555544 3333 78899999999999883321 11 112478899999999
Q ss_pred cCCCEEEEEECCCcEEEcC
Q 008393 549 TETGYVASASHDKFVKLWK 567 (567)
Q Consensus 549 pdg~~l~s~s~Dg~I~iWd 567 (567)
.||..| +++.|++|.|||
T Consensus 519 ~dGsll-a~s~~~~Itiwd 536 (792)
T KOG1963|consen 519 QDGSLL-AVSFDDTITIWD 536 (792)
T ss_pred CCCcEE-EEecCCEEEEec
Confidence 999655 566788999997
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=160.98 Aligned_cols=260 Identities=17% Similarity=0.252 Sum_probs=191.7
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE-CC-------CCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF-SP-------SMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f-sp-------~~~~l~s~s~dg~I~iw 356 (567)
.|...|.|+.|+.....+.+++.+..+.-||+.+ .....+.-..+.|....+ -+ ....|+.++.||.+.|.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~-~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSR-DSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccc-hhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 5777888999999887777776444444455443 222222222222222211 11 23478999999999888
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--eeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--SCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
+-. +..-+....|.+.|.+-.|+|+|..|+ +.++||.|++|.-... ..+..+...+.|++|.|+.+.++.+. .+
T Consensus 91 ~k~--~rVE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 NKS--ARVERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred ccc--chhhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence 765 455577889999999999999999887 8899999999985432 12334556788999999988777654 46
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.+.|--+.....+...+.|.+-|.++.|++..+++++|++| ..+|||-- +..+..-..|+.+|++++|.|+ ..+
T Consensus 167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~----G~~Lf~S~~~ey~ITSva~npd-~~~ 241 (737)
T KOG1524|consen 167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ----GANLFTSAAEEYAITSVAFNPE-KDY 241 (737)
T ss_pred eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc----CcccccCChhccceeeeeeccc-cce
Confidence 67777777777777899999999999999999999999999 99999964 2567777789999999999999 434
Q ss_pred EEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 514 LVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 514 ~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+++ ..+++++= ....+.|..++||+||..++.|+..|.|.+
T Consensus 242 ~v~-S~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 242 LLW-SYNTARFS----------SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eee-eeeeeeec----------CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 443 33455521 233467999999999999999998887653
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.1e-16 Score=137.66 Aligned_cols=267 Identities=15% Similarity=0.215 Sum_probs=189.0
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHTDT----------LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~----------~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
..|.+-+++|.+++|++|..+|.|.++.+.. ...+....+|.++|+.++|.. .+|++|+. |.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeeccC-ceEEEee
Confidence 4566778999999999999999999998753 233455679999999999983 36666664 9999998
Q ss_pred cCCCCceeE-------EeccC-----CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEec
Q 008393 358 ADNPGYSLR-------TFMGH-----SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQP 422 (567)
Q Consensus 358 ~~~~~~~~~-------~~~~h-----~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~ 422 (567)
.....+... ...-| --.|+++...|..+.++++| .|+.++.||+++|+..+.++++. .++....
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~ 166 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRN 166 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeecc
Confidence 764222110 01112 24588999999888787555 79999999999999999999875 4455556
Q ss_pred CCCEEEEEECCCeEEEEECCCCeEEEEecCC----------CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 423 HLGRYLAAAAENVVSILDAETQACRLSLQGH----------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h----------~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
..+.+++++.||++++||.++++++..+... ...|-+++ -+..+|++|+.-.+.+|.+++.+. .++.
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrsse~-t~vf 243 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSSES-TCVF 243 (325)
T ss_pred cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCCCc-eEEE
Confidence 6789999999999999999999988876532 12355555 456688877766999999987622 3343
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecC-CCEEEEEECCCcEEEc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE-TGYVASASHDKFVKLW 566 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW 566 (567)
.+ ...+..+.|..+ .+++++..+.|.-|.+..--...........++..|+-. -++|-.++..+.+.|+
T Consensus 244 pi---pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 PI---PARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred ec---ccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 33 345666677654 577888778899998865444444443334455555322 2455566666666664
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.75 E-value=1.2e-16 Score=146.16 Aligned_cols=249 Identities=18% Similarity=0.265 Sum_probs=184.8
Q ss_pred eeeeccCCCCeEEEEEcC--C-CCeEEEEeC----CCcEEEEeCC--CCeeeeee-cccCccEEEEEECCCCC-----eE
Q 008393 280 ANSVRASTSKVICCHFSS--D-GKLLATGGH----DKKAVLWHTD--TLKSKTNL-EEHSSLITDVRFSPSMP-----RL 344 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~--d-g~~lasg~~----dg~I~vwd~~--~~~~~~~l-~~h~~~V~~i~fsp~~~-----~l 344 (567)
+..+.. .-.++++.|+. + ..+||.|+. .++|.|..++ +++.+..- ..|..+++.+.|.|+.. +|
T Consensus 38 iy~Y~a-p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNA-PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecC-CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 334433 34677888884 2 347888873 4666666553 44444332 36889999999999863 45
Q ss_pred EEEeCCCcEEEEEcCCCCcee--------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee
Q 008393 345 ATSSFDKTVRVWDADNPGYSL--------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA 416 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~--------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~ 416 (567)
|+++ ..+|+|.+......+ ..-..+..++++.+|+.-..++|.+++-|-+..|||++++..
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------- 185 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------- 185 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc---------
Confidence 5544 349999987422111 112346788999999988888998999999999999887521
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~~~ 494 (567)
+.....+..|..+|..|+|...+ .++|+++.| .||+||++..+....+.+-
T Consensus 186 ---------------------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~ 238 (364)
T KOG0290|consen 186 ---------------------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYED 238 (364)
T ss_pred ---------------------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecC
Confidence 11223667799999999999855 488999999 9999999988777777776
Q ss_pred ecCCCceEEEEEeCCC-CeEEEEEcCC-eEEEEECCCCcEE--EeccccCCeeEEEEecCC-CEEEEEECCCcEEEcC
Q 008393 495 SCNGNKFHSCVFHPTY-PSLLVIGCYQ-SLELWNMSENKTM--TLTAHEGLIAALAVSTET-GYVASASHDKFVKLWK 567 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~-~~l~~~~~dg-~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iWd 567 (567)
.....+...++|++.. +++++...|. .|.|.|++..... ++.+|.+.|++++|.|.. ..|+|||+|..+.|||
T Consensus 239 p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 239 PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 6667788899999865 4566666554 8999999876543 889999999999999965 5799999999999997
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=3.6e-16 Score=162.44 Aligned_cols=257 Identities=17% Similarity=0.262 Sum_probs=183.8
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCce-e----EEeccCCCcEEEEEEcC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS-L----RTFMGHSASVMSLDFHP 382 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~-~----~~~~~h~~~V~~l~~~p 382 (567)
+.+.||+++........-.-...|+|++|+|. ..+|+.|+.+|.|.+||+...... . .....|..+|+.+.|..
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~ 301 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ 301 (555)
T ss_pred ceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence 47999999876333333335667999999995 557888889999999999875442 1 22346889999999976
Q ss_pred CCCe-EEEEEeCCCcEEEEECCCCeee-E-----E---------EeCCeeEEEEecCC-CEEEEEECCCeEEEEECCCC-
Q 008393 383 NKDD-LICSCDGDGEIRYWSINNGSCT-R-----V---------FKGGTAQMRFQPHL-GRYLAAAAENVVSILDAETQ- 444 (567)
Q Consensus 383 ~~~~-li~s~~~dg~I~iwd~~~~~~~-~-----~---------~~~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~- 444 (567)
+... =|++++.||.|+.|+++.-..- . . -....+.+.|.+.. ..+++|+.+|.|.--+....
T Consensus 302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~ 381 (555)
T KOG1587|consen 302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT 381 (555)
T ss_pred cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence 5333 2448888999999988754321 0 0 11245677887755 56788888898887443322
Q ss_pred -------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEE-E
Q 008393 445 -------ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLL-V 515 (567)
Q Consensus 445 -------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~-~ 515 (567)
+....+..|.++|+++.++|-+..++..+.| +|+||.... ....+..+..+...+++++|+|....++ +
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~--~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV--IASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC--CCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 1233556688999999999966544444447 999999862 2245666666777799999999876554 5
Q ss_pred EEcCCeEEEEECCCCcEE---EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 516 IGCYQSLELWNMSENKTM---TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..+|.|.|||+...... ....+....+.+.|++.|++|+.|...|.|.||+
T Consensus 460 ~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK 514 (555)
T ss_pred EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence 556899999999755432 4444466777888899999999999999999985
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.6e-17 Score=151.00 Aligned_cols=261 Identities=16% Similarity=0.214 Sum_probs=188.0
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCeeeeee--cccC-ccEEEEEEC
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS--DGKLLATGGHDKKAVLWHTDTLKSKTNL--EEHS-SLITDVRFS 338 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--dg~~lasg~~dg~I~vwd~~~~~~~~~l--~~h~-~~V~~i~fs 338 (567)
+.+|+++..++ ..+..+++|...+..++|.. ....+.+|+.||+|++||+........+ ..+. .+..|++..
T Consensus 50 gsv~lyd~~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n 126 (376)
T KOG1188|consen 50 GSVRLYDKGTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN 126 (376)
T ss_pred CeEEEEeccch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence 35778887776 45566778888888889877 4578899999999999999876655443 4454 466777777
Q ss_pred CCCCeEEEEeC----CCcEEEEEcCCCCceeEE-eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eE
Q 008393 339 PSMPRLATSSF----DKTVRVWDADNPGYSLRT-FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TR 409 (567)
Q Consensus 339 p~~~~l~s~s~----dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~ 409 (567)
..+..+++|.. +-.|.+||++.....++. ...|...|++++|+|....++++|+.||.|.+||++.... +.
T Consensus 127 ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~ 206 (376)
T KOG1188|consen 127 CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH 206 (376)
T ss_pred CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence 77878888854 677999999986664443 4579999999999999999999999999999999986532 23
Q ss_pred EEe--CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCC------------CCeeEEEEcC-CCCEEEEEe
Q 008393 410 VFK--GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHT------------KPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~------------~~V~~l~~sp-~g~~l~s~s 473 (567)
++. ..+..+.|...+ .++.+.+......+|+++.+.+...+.... ..+... .+| ++..++.++
T Consensus 207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~~~~~~l~g 285 (376)
T KOG1188|consen 207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGDKDTCALAG 285 (376)
T ss_pred hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCCcceEEEec
Confidence 333 245677787664 578888999999999999887655443210 111111 223 444555554
Q ss_pred CC--eEEEEeC---CCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEcCCeEEEEECC
Q 008393 474 ED--SVRVWTV---GSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 474 ~d--~I~iwd~---~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+ +..++-+ .++.....+..+.+ |...|.++.|.-.+..+++||.||.+.+|...
T Consensus 286 ~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 286 TDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 42 4444433 34444455556665 55667888899899999999999999999853
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=3.5e-16 Score=162.54 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=195.7
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCee--eee----ecccCccEEEEEE
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLKS--KTN----LEEHSSLITDVRF 337 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~--~~~----l~~h~~~V~~i~f 337 (567)
..-+|+..+.... ...+ .-...|+|++|+| +..+||.|..+|.|.+||+..+.. ... ...|...|+.+.|
T Consensus 223 ~~~vW~~~~p~~P--e~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP--ELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred eEEEEecCCCCCc--eEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 4567887766222 2222 2367899999999 557888889999999999987655 322 3368999999999
Q ss_pred CCCC--CeEEEEeCCCcEEEEEcCCCCceeEE-----ec------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 338 SPSM--PRLATSSFDKTVRVWDADNPGYSLRT-----FM------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 338 sp~~--~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..+. .-|++++.||.|..|+++.-..+... .. .-...+++++|.+.....++.|+++|.|..-+-..
T Consensus 300 ~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g 379 (555)
T KOG1587|consen 300 LQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKG 379 (555)
T ss_pred eccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccC
Confidence 7654 45999999999999988752221111 11 12356899999998888888999999998844332
Q ss_pred CeeeE-----------EEeCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEEecCCCCCeeEEEEcCCCC-EEEE
Q 008393 405 GSCTR-----------VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGHTKPIDSVCWDPSGE-LLAS 471 (567)
Q Consensus 405 ~~~~~-----------~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s 471 (567)
.+... ...+.+..+.++|-...++..+.|-+|+||... ...++..+..+...|++++|||..- .|++
T Consensus 380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred CcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 22111 123467788899999888888889999999998 7788888888888899999999765 5666
Q ss_pred EeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 472 VSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 472 ~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+..+ .|.+||+..... ..+..........+.+.|++.|+.|++|...|.+.+|++...
T Consensus 460 ~d~~G~l~iWDLl~~~~-~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 460 VDGDGNLDIWDLLQDDE-EPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred EcCCCceehhhhhcccc-CCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 6666 999999976433 344444444666777788889999999999999999999654
No 194
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.7e-15 Score=142.46 Aligned_cols=276 Identities=15% Similarity=0.249 Sum_probs=191.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-cCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-HSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
+-.+..++|++.-..+|++..|-.|++||-.. +....++. ....|+|++|-|. ++.|++|+..| |.||..+.....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCccccc
Confidence 34566789998767788999999999999876 55555553 4467999999995 45788888777 999988643221
Q ss_pred -------------eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE---eCCeeEEEEecCCCEEE
Q 008393 365 -------------LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYL 428 (567)
Q Consensus 365 -------------~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~ 428 (567)
+....+| ..|++|.|.+||..++-+.-.|..|.|||..++.++... .+++.-+.|+|++..++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223345 789999999999877755566889999999999877655 24677899999999999
Q ss_pred EEECCCeEEEEE-CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC------------CceEEEee
Q 008393 429 AAAAENVVSILD-AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE------------GECVHELS 495 (567)
Q Consensus 429 ~~~~dg~I~i~d-~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~------------~~~i~~~~ 495 (567)
++..|+..++|. .++.....-.. ..+.|...+|+|+|.+|+....+.-++|.+....+ ...+..+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~ 333 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQ 333 (445)
T ss_pred Eecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccch
Confidence 999999999994 44444443333 34589999999999988877776444554432111 01111111
Q ss_pred -----c----CCCceEEEEEeCCCCeEEEEEcCC--------eEEEEECCCCcEEEec--c--ccCCeeEEEEec---CC
Q 008393 496 -----C----NGNKFHSCVFHPTYPSLLVIGCYQ--------SLELWNMSENKTMTLT--A--HEGLIAALAVST---ET 551 (567)
Q Consensus 496 -----~----~~~~i~~~~~sp~~~~l~~~~~dg--------~I~iwd~~~~~~~~~~--~--h~~~V~~l~~sp---dg 551 (567)
. -.+.+.+++|.|.|.+|++.-..+ .|.+||.+....+.+. + .......++|+| ++
T Consensus 334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g 413 (445)
T KOG2139|consen 334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEG 413 (445)
T ss_pred hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCC
Confidence 1 146688999999999999986654 4777887766555332 1 111244556654 45
Q ss_pred CEEEEEECCCcEEEc
Q 008393 552 GYVASASHDKFVKLW 566 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iW 566 (567)
.+|..|=..|.|.-|
T Consensus 414 ~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 414 RLLSIAWSTGRIQRY 428 (445)
T ss_pred cEEEEEeccCceEee
Confidence 556555556665543
No 195
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.74 E-value=3e-16 Score=163.76 Aligned_cols=237 Identities=15% Similarity=0.172 Sum_probs=166.5
Q ss_pred CCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCee--eeeecccCccEEEEE
Q 008393 262 RDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKS--KTNLEEHSSLITDVR 336 (567)
Q Consensus 262 ~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~--~~~l~~h~~~V~~i~ 336 (567)
.+..+.+||.... ....+..|...|.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+| ...++
T Consensus 182 ~~~~i~i~d~dg~----~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~ 254 (429)
T PRK01742 182 QPYEVRVADYDGF----NQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPA 254 (429)
T ss_pred ceEEEEEECCCCC----CceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCcee
Confidence 3456667776433 235567788899999999999999987654 3699999988754 3334444 34689
Q ss_pred ECCCCCeEEEEe-CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeCC
Q 008393 337 FSPSMPRLATSS-FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKGG 414 (567)
Q Consensus 337 fsp~~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~~ 414 (567)
|+|||+.|+.++ .+|.+.||.++........+..+...+....|+|+|+.+++++..++...||++... .....+...
T Consensus 255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~ 334 (429)
T PRK01742 255 FSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR 334 (429)
T ss_pred ECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC
Confidence 999999888765 688766664432223345666777788899999999988878777888888876532 222222222
Q ss_pred eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEE
Q 008393 415 TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~ 493 (567)
.....|+|++..+++++.++ +.+||+.+++.......+ ....+.|+|||++|++++.+ .+.+|++.. .....+..
T Consensus 335 ~~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~-~~G~~~~~ 410 (429)
T PRK01742 335 GYSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVS-ADGRFKAR 410 (429)
T ss_pred CCCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEE-CCCCceEE
Confidence 24567999999988887754 566999988765333222 34568899999999999877 777777632 12256677
Q ss_pred eecCCCceEEEEEeCC
Q 008393 494 LSCNGNKFHSCVFHPT 509 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~ 509 (567)
+..+...+..++|+|-
T Consensus 411 l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 411 LPGSDGQVKFPAWSPY 426 (429)
T ss_pred ccCCCCCCCCcccCCC
Confidence 7777777888899885
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=3.7e-16 Score=163.04 Aligned_cols=230 Identities=17% Similarity=0.184 Sum_probs=162.3
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN 383 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~ 383 (567)
+..|++||.+... ...+..|...+.++.|+|||+.|+.++.+ ..|++||+.++.. .+..+.+| ...++|+|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4789999986554 56677788889999999999999888754 3699999987332 23333333 446899999
Q ss_pred CCeEEEEEeCCCcEEE--EECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CCeEEEEECC--CCeEEEEecCCCCC
Q 008393 384 KDDLICSCDGDGEIRY--WSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQACRLSLQGHTKP 456 (567)
Q Consensus 384 ~~~li~s~~~dg~I~i--wd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~~~~~~~~h~~~ 456 (567)
|+.++++.+.+|.+.| ||+.++....... .......|+|++..++.++. ++...||++. .+.. ..+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC-
Confidence 9988877777886555 4666665443322 23567889999998877664 6767777654 3332 222 3433
Q ss_pred eeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC---CCCcEE
Q 008393 457 IDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM---SENKTM 533 (567)
Q Consensus 457 V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~---~~~~~~ 533 (567)
.++.|+|||++|+..+.+.+.+||+.++... . +... .....+.|+|+|++|++++.++.+.+|++ ......
T Consensus 336 -~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~~~-~---lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~ 409 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDNVVKQDLTSGSTE-V---LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKA 409 (429)
T ss_pred -CCccCCCCCCEEEEEcCCCEEEEECCCCCeE-E---ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 4678999999999888787777999876321 1 1111 12345689999999999999887766654 444455
Q ss_pred EeccccCCeeEEEEecC
Q 008393 534 TLTAHEGLIAALAVSTE 550 (567)
Q Consensus 534 ~~~~h~~~V~~l~~spd 550 (567)
.+..|.+.+..++|+|-
T Consensus 410 ~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 410 RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EccCCCCCCCCcccCCC
Confidence 77788888999999984
No 197
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=1.9e-17 Score=160.17 Aligned_cols=261 Identities=18% Similarity=0.279 Sum_probs=207.6
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
.-+.+.|+.+|++|+.|+..|.|..+|+.++++...+.. ...|.++.|..+..+||++- ...++|||-. +..++.+
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~--GtElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQ-KKYVYVYDNN--GTELHCL 206 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhh-hceEEEecCC--CcEEeeh
Confidence 446799999999999999999999999999999888874 34589999998888888775 4568999876 5566777
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
+.| ..|..+.|.|. ..|+++++..|.++.-|+.+|+.+..+. +.+..++-+|.+..+-+|..+|+|.+|.....+
T Consensus 207 k~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 654 56899999998 6788899999999999999999887664 456778889998899999999999999999999
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
++..+..|.++|.+|++.++|.|+++.+.| .|+|||++... .+.++.. ..+...++||..| +++.+....|.|
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i 358 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY---QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI 358 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---ccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence 999999999999999999999999999999 99999998764 3333333 3455666787766 666666678999
Q ss_pred EEC-CCC---cEEEec--cccCCeeEEEEecCCCEEEEEECCC
Q 008393 525 WNM-SEN---KTMTLT--AHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 525 wd~-~~~---~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
|.- -.+ ....+. ...+.|..+.|.|-...|..|-.-|
T Consensus 359 w~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 359 WKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 942 221 111122 2235899999998776666554443
No 198
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.72 E-value=4.1e-15 Score=140.55 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=171.6
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCe
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGS 406 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~ 406 (567)
...+..+.|+.+...|..|+.|| .++|..+...+... .......|..+-|+.. |++..+.+ +.+++++++.+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence 34577778999999999999999 78998876444222 1222344556667633 55444443 459999999888
Q ss_pred eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC---CCCCeeEEEEcCCCCEEEEEeCC---eEEEE
Q 008393 407 CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG---HTKPIDSVCWDPSGELLASVSED---SVRVW 480 (567)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~---h~~~V~~l~~sp~g~~l~s~s~d---~I~iw 480 (567)
.+..+.-+...++.--+.++++++-.+. |+|||+++.+.++++.. +...+.++.++..+.+||.-+.- .|.||
T Consensus 80 ~ICe~~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred eEEEEecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 7766554444444333445676666655 99999999999988765 34456666666677788875432 79999
Q ss_pred eCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-Eecc--ccCCeeEEEEecCCCEEEE
Q 008393 481 TVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTA--HEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 481 d~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~--h~~~V~~l~~spdg~~l~s 556 (567)
|+.+- ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+.- -...|.+++|+|++.+|++
T Consensus 159 d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 159 DTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred Ecccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 99765 77888889999999999999999999999999 5799999999877 4442 2346889999999999999
Q ss_pred EECCCcEEEcC
Q 008393 557 ASHDKFVKLWK 567 (567)
Q Consensus 557 ~s~Dg~I~iWd 567 (567)
.+..++|.||+
T Consensus 236 sS~TeTVHiFK 246 (391)
T KOG2110|consen 236 SSNTETVHIFK 246 (391)
T ss_pred ecCCCeEEEEE
Confidence 99999999985
No 199
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.72 E-value=1.2e-15 Score=141.59 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=202.2
Q ss_pred eeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEc
Q 008393 282 SVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~ 358 (567)
.++.-..+|+|.+|++|+..+|++.....|.||..... +..+++..|...|+.|+|+|..+.|++|+.|..-+||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445689999999999999999999999999987654 577889999999999999999999999999999999999
Q ss_pred CCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-------eeEEEeCCeeEEEEecCCCEEEE
Q 008393 359 DNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-------CTRVFKGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 359 ~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~ 429 (567)
..++ ++...+..++..++++.|+|.++ .|++|+.-..|.||-++... ..+.++..+.++.|+|++-.+++
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaa 163 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAA 163 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecc
Confidence 4433 23445566899999999999965 56689889999998877543 22335567889999999999999
Q ss_pred EECCCeEEEEECC-----C-------------CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 430 AAAENVVSILDAE-----T-------------QACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 430 ~~~dg~I~i~d~~-----~-------------~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
++.|+..++|..- . |..+..+....+.|..+.|+|+|..|+-.+.| .|.+-|..... +.
T Consensus 164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~--~~ 241 (361)
T KOG1523|consen 164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS--ER 241 (361)
T ss_pred cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc--hh
Confidence 9999998888532 1 12233343456789999999999999999999 99998876542 12
Q ss_pred EEEeecCCCceEEEEEeCCC----------CeEEEEEcCCeEEE-EECCCCc-------------------------EE-
Q 008393 491 VHELSCNGNKFHSCVFHPTY----------PSLLVIGCYQSLEL-WNMSENK-------------------------TM- 533 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~----------~~l~~~~~dg~I~i-wd~~~~~-------------------------~~- 533 (567)
+..+....-+..++.|-.+. ..+++...++.+.+ -++...+ ..
T Consensus 242 v~~~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~~d~k~~~~~~~~ 321 (361)
T KOG1523|consen 242 VQSVATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLGMDRKGRTENDRS 321 (361)
T ss_pred ccchhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCchhHHHHHHHhccccccccccccc
Confidence 33333334556666665443 33344444431111 1111100 00
Q ss_pred -EeccccCCeeEEEEecCC----CEEEEEECCCcEEEcC
Q 008393 534 -TLTAHEGLIAALAVSTET----GYVASASHDKFVKLWK 567 (567)
Q Consensus 534 -~~~~h~~~V~~l~~spdg----~~l~s~s~Dg~I~iWd 567 (567)
....|...|+.|..-..+ ..+-+++.||.|.|||
T Consensus 322 ~~~~~h~N~i~~l~~~~~~~~~i~~f~t~g~Dg~~viw~ 360 (361)
T KOG1523|consen 322 ARWGAHQNCITSLRPFAGGKGKITKFSTSGLDGKLVIWD 360 (361)
T ss_pred ccchHhHhhhhhhhecccCCcceEEEEecCccceEEEec
Confidence 113466667766653322 2466888999999997
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.72 E-value=3.1e-14 Score=144.14 Aligned_cols=265 Identities=13% Similarity=0.138 Sum_probs=177.0
Q ss_pred CeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 300 KLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 300 ~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+++ ++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+ .+.+..+.. .....++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-~~~v~~i~~-G~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-GKVVATIKV-GGNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-SSEEEEEE--SSEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-ccEEEEEec-CCCcceE
Confidence 344 4455689999999999999999987655445578999999999999999999999998 567777764 4457889
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC----------eeEEEEecCCCEEEEEECC-CeEEEEECCCCeEE
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG----------TAQMRFQPHLGRYLAAAAE-NVVSILDAETQACR 447 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~d-g~I~i~d~~~~~~~ 447 (567)
+++++|+++++++...+.+.++|.++.+.++.+... ...+..++....+++.-.| +.|.+.|....+.+
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 999999999988889999999999999998887532 3456667887877777664 89999997765322
Q ss_pred -EEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCC-------------------------------------
Q 008393 448 -LSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE------------------------------------- 487 (567)
Q Consensus 448 -~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~------------------------------------- 487 (567)
..............|+|++++++.+... .|-++|..+++.
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~ 243 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAI 243 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceec
Confidence 2333344667889999999988776533 777777764311
Q ss_pred ---------------CceEEEeecCCCceEEEEEeCCCCeEEEE---E-cCCeEEEEECCCCcEEE-ecc-ccCCeeEEE
Q 008393 488 ---------------GECVHELSCNGNKFHSCVFHPTYPSLLVI---G-CYQSLELWNMSENKTMT-LTA-HEGLIAALA 546 (567)
Q Consensus 488 ---------------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~---~-~dg~I~iwd~~~~~~~~-~~~-h~~~V~~l~ 546 (567)
.+.+.++...+.+ ..+..+|+++++++. + ..+.|.++|..+.+... +.. -...+..+.
T Consensus 244 ~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~e 322 (369)
T PF02239_consen 244 PLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHME 322 (369)
T ss_dssp EEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEE
T ss_pred ccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccE
Confidence 1122233333333 456779999999998 3 34699999999987663 322 223488999
Q ss_pred EecCCCEEEEEECCC--cEEEcC
Q 008393 547 VSTETGYVASASHDK--FVKLWK 567 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg--~I~iWd 567 (567)
|+++|+++..+.+|+ .|.|||
T Consensus 323 f~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 323 FNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp E-TTSSEEEEEEE--TTEEEEEE
T ss_pred ECCCCCEEEEEEecCCCEEEEEE
Confidence 999999876655543 588875
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.2e-14 Score=149.42 Aligned_cols=232 Identities=14% Similarity=0.144 Sum_probs=167.6
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+.... ..+..+...+.+.+|+|||+.|+..+. +..|++|++.+ +.. ..+....+.+..+.|+|||+
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~~-~~l~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVASFPRHNGAPAFSPDGS 255 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CCe-EEccCCCCCcCCeEECCCCC
Confidence 4789999875543 344556778999999999999887653 35699999986 332 22333334455789999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++.+ + .|+++|+.+++.. .+..+.....
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~ 334 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ 334 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence 8887766665 599999998876655433 35678899999998887764 3 5666788776543 3333444566
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 531 (567)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+|||++|+.++.++ .++++++....
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~----~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV----QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCe----EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 78999999998876643 588999977632 22221 12234568999999999998876 47888997777
Q ss_pred EEEeccccCCeeEEEEec
Q 008393 532 TMTLTAHEGLIAALAVST 549 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~sp 549 (567)
...+..|.+.+...+|+|
T Consensus 410 ~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 410 KARLPATDGQVKFPAWSP 427 (429)
T ss_pred eEECccCCCCcCCcccCC
Confidence 778888889999999987
No 202
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=6.3e-15 Score=139.69 Aligned_cols=241 Identities=16% Similarity=0.205 Sum_probs=189.8
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc--cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE--HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~--h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.|...|.|++|....++|++|+.+++|.+.|+++.+.+..+.. ..+.|+.+..+|..+.|++.+.+|.|.+||.....
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 5668999999999999999999999999999999888877653 34589999999999999999999999999998643
Q ss_pred ce--eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEE------EeCC---eeEEEEecCCCEEEEE
Q 008393 363 YS--LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV------FKGG---TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 363 ~~--~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~------~~~~---~~~~~~~~~~~~l~~~ 430 (567)
.. .............+.|+|....||++.+..+.+.+||++.... +.. +... -..+.|+|.|..+++.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi 262 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI 262 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence 22 2233345567889999999999999999999999999986432 111 1111 1356799999999998
Q ss_pred ECCCeEEEEECCCCeEE-EEecCCC-------CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCC--------------
Q 008393 431 AAENVVSILDAETQACR-LSLQGHT-------KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSE-------------- 487 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~-~~~~~h~-------~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~-------------- 487 (567)
-....-.+||+-..++. ..+. |. ..+.+++|..|.. +++|+++ .|++|.+.....
T Consensus 263 RR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~ 340 (609)
T KOG4227|consen 263 RRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEM 340 (609)
T ss_pred hccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhC
Confidence 88888888998886544 3333 32 2466788876554 8899999 999999863210
Q ss_pred ------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 488 ------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 488 ------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
...+..+++|...+..+.|++....|++.+-.+.++||.-
T Consensus 341 ~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 341 PSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred chhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 1235678899999999999999999999999999999964
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.69 E-value=5.3e-15 Score=137.49 Aligned_cols=271 Identities=18% Similarity=0.213 Sum_probs=192.0
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCcEEEEEcCCCCceeEEecc
Q 008393 292 CCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
-+.|||+|+++|+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++. ...|+.|.+|++..... ...+..
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence 47899999999999755 888888888776655443 345778899888776554 56788999999987443 445566
Q ss_pred CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEECC---------------
Q 008393 371 HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAAE--------------- 433 (567)
Q Consensus 371 h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d--------------- 433 (567)
....+.+++|+|+|++++.+...|-.|.+|.+.+.+.... .+.....++|++++...+..+.-
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 6788999999999999999999999999999998775533 34556677777776655554431
Q ss_pred ---------------------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-----
Q 008393 434 ---------------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS----- 486 (567)
Q Consensus 434 ---------------------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~----- 486 (567)
+.+.+||.--.-.+..+. ..-.+..++|+|.+++|+.|+.| .+||.+--+.+
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef 248 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF 248 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence 123344432221111111 22467889999999999999999 77775432100
Q ss_pred ------------------------------------------C----------CceEEEee------cCCCceEEEEEeC
Q 008393 487 ------------------------------------------E----------GECVHELS------CNGNKFHSCVFHP 508 (567)
Q Consensus 487 ------------------------------------------~----------~~~i~~~~------~~~~~i~~~~~sp 508 (567)
. ...+..++ ...-.+--++|++
T Consensus 249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~ 328 (447)
T KOG4497|consen 249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC 328 (447)
T ss_pred ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence 0 00011111 1122356689999
Q ss_pred CCCeEEEEEcC--CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 509 TYPSLLVIGCY--QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 509 ~~~~l~~~~~d--g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
|..++++-... +.+.+||+...+...+.....+|.+..|+|....|+.+.....+++|
T Consensus 329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW 388 (447)
T ss_pred CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence 99988877654 58999999998888777778899999999998888877766678888
No 204
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.9e-14 Score=150.00 Aligned_cols=279 Identities=23% Similarity=0.258 Sum_probs=200.1
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC---eEEEEeCCCcEEEEEcC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP---RLATSSFDKTVRVWDAD 359 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~---~l~s~s~dg~I~iwd~~ 359 (567)
+.+.+..-..-.|++|+++++... +..|.||...++.++..+.+|...++.+.+.|... ++++++.||.|++||..
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred eccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 333333344567999999888765 67999999999999999999999999999988544 78899999999999998
Q ss_pred CCCceeEEeccCCCcEEEEEEcCC---CCeEEEEEeCCCcEEE-EECCCCeeeEE-----E--------eCC--eeEEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRY-WSINNGSCTRV-----F--------KGG--TAQMRF 420 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~---~~~li~s~~~dg~I~i-wd~~~~~~~~~-----~--------~~~--~~~~~~ 420 (567)
. +..++++..+ ..|..+.+.|. ....++.+..|..+.. ......+.... + +.. ...+.+
T Consensus 91 ~-~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~ 168 (792)
T KOG1963|consen 91 D-GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVD 168 (792)
T ss_pred C-cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEE
Confidence 7 6777776643 34444444221 1111212222211111 11111111111 0 111 244555
Q ss_pred ecCCCEEEEEECCCeEEEEECCCCeEEE----EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC-CCCCceEEEe
Q 008393 421 QPHLGRYLAAAAENVVSILDAETQACRL----SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSEGECVHEL 494 (567)
Q Consensus 421 ~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~-~~~~~~i~~~ 494 (567)
++. +.+.....+..+.+|+..+..... .-..|...+++.+++|+++++|++..| .|.+|.--. .........+
T Consensus 169 ~~~-ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l 247 (792)
T KOG1963|consen 169 NNS-GEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL 247 (792)
T ss_pred cCC-ceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE
Confidence 554 566666677788888887754111 112366678999999999999999998 999996543 2333455667
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.=|...|.+++|+++|.+|++||.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|+.|.+
T Consensus 248 HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 248 HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred EecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEE
Confidence 77889999999999999999999999999999999997777788899999999999999999999998876
No 205
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.68 E-value=3.2e-15 Score=142.77 Aligned_cols=124 Identities=23% Similarity=0.436 Sum_probs=96.0
Q ss_pred CCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC---------eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 287 TSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTL---------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~---------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
..+|..+.|.++.. .||+|+.|..|++|.+... +....|..|...|+++.|+|+|.+|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 56899999999876 9999999999999987632 2345677899999999999999999999999999999
Q ss_pred EcC--------C------C-CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE
Q 008393 357 DAD--------N------P-GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF 411 (567)
Q Consensus 357 d~~--------~------~-~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~ 411 (567)
... + + ....+.+.+|...|..++|.|++.. +++++-|..+++||+..|..+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~-l~s~s~dns~~l~Dv~~G~l~~~~ 161 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF-LVSGSVDNSVRLWDVHAGQLLAIL 161 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce-eeeeeccceEEEEEeccceeEeec
Confidence 776 1 0 1123456677788888888887654 447777777777777766555443
No 206
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.4e-14 Score=143.74 Aligned_cols=274 Identities=14% Similarity=0.162 Sum_probs=206.2
Q ss_pred cCCCCeEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLL-ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~l-asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
.|...-+.|..+|||+|+ |+|.+--.|++||+.+..+.+.-......|.-..++.|-..++.-..|.+|.+..... .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G--~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG--R 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC--e
Confidence 466777889999999976 6677888999999998776665555566777777888877888888888887765542 1
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...+ .-...-..++++.-.-.|+ .++....|+-++++.|..+..|. +.+.++.+++..+.+++|+.+|.|.+||
T Consensus 127 hy~~--RIP~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 127 HYRT--RIPKFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred eeee--ecCcCCccccccCCCccEE-EeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence 1111 1223345566665444566 44456789999999999887765 4678889999999999999999999999
Q ss_pred CCCCeEEEEecC------CCC-----CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC
Q 008393 441 AETQACRLSLQG------HTK-----PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 441 ~~~~~~~~~~~~------h~~-----~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp 508 (567)
.++...+..+.. |.+ .|+++.|+.+|-.+++|+.. .|.|||+++.. ..+..-.....+|..+.|.+
T Consensus 204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK--PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC--ceeecccCCccceeeecccc
Confidence 998766555432 333 39999999999999999988 99999999763 23333344567788889977
Q ss_pred CCCe-EEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 509 TYPS-LLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 509 ~~~~-l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+.. .++......++|||-.+++.+........++.+|+-|++.++++|-+++.+..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCccee
Confidence 6433 33333345889999999999977777777999999999999999988776543
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.4e-15 Score=146.28 Aligned_cols=191 Identities=23% Similarity=0.280 Sum_probs=151.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM- 369 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~- 369 (567)
.+++|+.+|..|++|+.||+++||++.....+.....|...|.++.|+|||+.|++-+.| ..+||++++ +..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~-g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT-GAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEecc-CchhhhcCC
Confidence 689999999999999999999999999988888888999999999999999999999999 799999998 44444333
Q ss_pred -cCCCcEEEEEEcCCC---CeE-EEEEeCCCcEEEEECCCCee---eE---EE--eCCeeEEEEecCCCEEEEEECCCeE
Q 008393 370 -GHSASVMSLDFHPNK---DDL-ICSCDGDGEIRYWSINNGSC---TR---VF--KGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 370 -~h~~~V~~l~~~p~~---~~l-i~s~~~dg~I~iwd~~~~~~---~~---~~--~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
........+.|..++ ..+ ++.-..-+.|+.||+..... ++ .+ ...+.+++.+.+|..++.++.+|.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 233445667777664 223 33333445677766543222 11 11 2367899999999999999999999
Q ss_pred EEEECCCCeEEEEe-cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 437 SILDAETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 437 ~i~d~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
.||+..+.+.++.. +.|...|+.+.|+||.+++++.+.+ .+.|..+.
T Consensus 306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 99999998777655 4599999999999999999999988 87777764
No 208
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1e-14 Score=135.48 Aligned_cols=232 Identities=17% Similarity=0.298 Sum_probs=180.3
Q ss_pred ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC--ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC-C
Q 008393 327 EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG--YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI-N 403 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~-~ 403 (567)
.-..+|+|.+|++|...+|++.....|.||...... +..+++..|...|+.|+|.|..++++ +|+.|..-++|.. .
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIv-tcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIV-TCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCcee-EccCCCCccccccCC
Confidence 345789999999999999999999999999987644 46788999999999999999987766 9999999999999 4
Q ss_pred CCe-----eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE----EEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 404 NGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC----RLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 404 ~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~----~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.++ .+..+....+++.|+|.++.|++++....|.||-.+...- .+.-+.+...|.++.|+|++-+|+.|+.
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~ 166 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST 166 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence 444 2345667889999999999999999999999887765432 2233456788999999999999999999
Q ss_pred C-eEEEEeCC-----CCC----------CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--EEEec
Q 008393 475 D-SVRVWTVG-----SGS----------EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLT 536 (567)
Q Consensus 475 d-~I~iwd~~-----~~~----------~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--~~~~~ 536 (567)
| ..+||..- ... -...+.++....+.+..+.|+|+|..|+-.+.|..+.+-|..... ...+.
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~ 246 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA 246 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence 9 88888642 110 012344555667889999999999999999999999999987764 22333
Q ss_pred cccCCeeEEEEecCCCEEEEEECC
Q 008393 537 AHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.-.-+..++.|-.+. .++.+++|
T Consensus 247 ~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 247 TAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred hccCCceeeEeecCC-ceeecCCC
Confidence 333566677775433 34444444
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=3.5e-15 Score=146.99 Aligned_cols=242 Identities=15% Similarity=0.196 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee----eeeecccCccEEEEEE-----CCCCCeEEEEeCCCcEEEEEcC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRF-----SPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~----~~~l~~h~~~V~~i~f-----sp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.+....++-.|++|+..- ...+++|+...+.. +...........|-+| .+.+--|+.|-.-|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence 444555566677776543 45688888763221 1111111222333344 3455578888888889998876
Q ss_pred CCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE--EEEecCCCEEEEEECC
Q 008393 360 NPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ--MRFQPHLGRYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d 433 (567)
. ....+.+. -....|+|+.|-|.++.+++..-.+|.+++||... ....+. ....+++..+.+....
T Consensus 204 ~-~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~k 275 (636)
T KOG2394|consen 204 N-FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSK 275 (636)
T ss_pred h-hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeee
Confidence 5 22111111 13478999999999999998999999999998721 111111 1122233333332221
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+ ..+..++..+.-..+.|+.++|+|||++||+.+.| .+||||+.+. +.+..++..-+.+.|++|+|||+|
T Consensus 276 s------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKy 346 (636)
T KOG2394|consen 276 S------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKY 346 (636)
T ss_pred c------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccE
Confidence 1 11113333333345689999999999999999999 9999999765 555556666788999999999999
Q ss_pred EEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 513 LLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
|++|+.|.-|.||.+.+.+.+ .-.+|..+|+.++|.
T Consensus 347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999988 667999999999998
No 210
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=2.8e-15 Score=147.45 Aligned_cols=183 Identities=15% Similarity=0.217 Sum_probs=133.9
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
+.+..|.+.|.|-.|+|||.-|+++|.||.|++|. .+|-...++......|+|++|.|+.+.++.+..+ .+.|=-+..
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~ 175 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAA 175 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeeccc
Confidence 45678999999999999999999999999999996 5677778888888999999999998766665443 366666665
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
...+...+.|.+-|.++.|++.. .+|++|++|-..+|||-...
T Consensus 176 -n~k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~----------------------------------- 218 (737)
T KOG1524|consen 176 -NSKIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA----------------------------------- 218 (737)
T ss_pred -ccceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc-----------------------------------
Confidence 34456678899999999999985 58889999999999996422
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
.+++-..|+.+|++++|.|+ +.++.++.+++++=.. ..+.|..++|++||..+++|+..|
T Consensus 219 -----~Lf~S~~~ey~ITSva~npd-~~~~v~S~nt~R~~~p--------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 219 -----NLFTSAAEEYAITSVAFNPE-KDYLLWSYNTARFSSP--------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred -----ccccCChhccceeeeeeccc-cceeeeeeeeeeecCC--------------CccceEEEEEcCCCceeeccccCc
Confidence 22233346666677777766 5555555554442221 233456666777776666666666
Q ss_pred eE
Q 008393 521 SL 522 (567)
Q Consensus 521 ~I 522 (567)
.+
T Consensus 279 ~v 280 (737)
T KOG1524|consen 279 QL 280 (737)
T ss_pred eE
Confidence 44
No 211
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1e-13 Score=145.15 Aligned_cols=233 Identities=16% Similarity=0.220 Sum_probs=167.5
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
...|.+||.+ +.....+..|...+.+..|+|||+.|+..+. +..|++||+.++ .. ..+..+.+.+...+|+|+|
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g-~~-~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG-QR-ELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC-cE-EEeecCCCcccCcEECCCC
Confidence 3478889885 4445667778889999999999999888764 467999999873 32 3455566778899999999
Q ss_pred CeEEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-C--CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.++. |++||+.++........ ......|+|++..++..+. + ..|+++|+.+++... +..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcc
Confidence 998888777665 77889988776544332 2456789999998887775 2 378899988775543 33344556
Q ss_pred eEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC------CeEEEEEC
Q 008393 458 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNM 527 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~I~iwd~ 527 (567)
....|+|||++|+....+ .|.+||+..+. ...+. ....+..+.|+|||+.|+..+.+ ..|+++|+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl 411 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL 411 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence 778999999999887643 58888875442 12222 22345677999999998876653 36889999
Q ss_pred CCCcEEEeccccCCeeEEEEecC
Q 008393 528 SENKTMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 528 ~~~~~~~~~~h~~~V~~l~~spd 550 (567)
.++....+. ..+.+...+|+|-
T Consensus 412 ~g~~~~~l~-~~~~~~~p~Wsp~ 433 (435)
T PRK05137 412 TGRNEREVP-TPGDASDPAWSPL 433 (435)
T ss_pred CCCceEEcc-CCCCccCcccCCC
Confidence 877665544 3556777888763
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=6.9e-13 Score=123.38 Aligned_cols=231 Identities=16% Similarity=0.236 Sum_probs=163.2
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCC------CcEEEEEcCCC
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFD------KTVRVWDADNP 361 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~d------g~I~iwd~~~~ 361 (567)
....++|+-|...+++|.. .-.+||+.+..+.......+.+.+.-+...-..++|+. |+.+ ..|.|||=..
T Consensus 7 ~~lsvs~NQD~ScFava~~-~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k- 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATD-TGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK- 84 (346)
T ss_pred ceeEEEEccCCceEEEEec-CceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence 4456999999999998874 45899999876654444333333222222223345543 3332 4699999443
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC-CCeeeEEEeC---CeeEEEEecCCCE-EEE--EECCC
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN-NGSCTRVFKG---GTAQMRFQPHLGR-YLA--AAAEN 434 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~-~~~~~~~~~~---~~~~~~~~~~~~~-l~~--~~~dg 434 (567)
..++.++. ...+|.++.+.++ ++++. ..+.|+||... +.+.++.+.. +..-+++.|..+. +++ +-.-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvv--l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVV--LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEE--ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence 56666665 6788999999876 34433 37899999998 5555555542 2223344444433 322 22368
Q ss_pred eEEEEECCCCeE--EEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecC--CCceEEEEEeC
Q 008393 435 VVSILDAETQAC--RLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCN--GNKFHSCVFHP 508 (567)
Q Consensus 435 ~I~i~d~~~~~~--~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~--~~~i~~~~~sp 508 (567)
.|.|.|+...+. ...+..|...|.|++++-+|.++|+++.. -|||||..++ ..+.++... ...|.+++|+|
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp 236 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP 236 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence 999999987665 46788999999999999999999999987 6999999888 556565533 45699999999
Q ss_pred CCCeEEEEEcCCeEEEEECCC
Q 008393 509 TYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 509 ~~~~l~~~~~dg~I~iwd~~~ 529 (567)
+..+|++++..|+|.||.++.
T Consensus 237 ~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 237 NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred CccEEEEEcCCCeEEEEEeec
Confidence 999999999999999998875
No 213
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.4e-14 Score=146.10 Aligned_cols=232 Identities=17% Similarity=0.143 Sum_probs=166.1
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+. .....+..+...+.+.+|+||++.|+..+.+ ..|++||+.++ .. ..+..+.+...++.|+|+|+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g-~~-~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG-QR-ELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC-CE-EEeccCCCCccCceECCCCC
Confidence 4689999864 4445566677789999999999999888743 46999999863 32 33344455566889999999
Q ss_pred eEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.+| .|++||+.+++....... ......|+|++..++.++. ++ .|+++|+.+++.... ..+.....
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~ 339 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNA 339 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCcc
Confidence 8887777666 599999998876543332 2356789999998888775 33 578888877754332 22334455
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~ 531 (567)
.++|+|||++|+..+.+ .|.+||+.++.. ..+. +......+.|+|||++|+..+.+ ..|+++++..+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~----~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV----RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCe----EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 78999999999876532 599999976532 1222 22234456999999998887764 378999997766
Q ss_pred EEEeccccCCeeEEEEec
Q 008393 532 TMTLTAHEGLIAALAVST 549 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~sp 549 (567)
...+..+.+.+..++|+|
T Consensus 415 ~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 415 RQRLVSADGEVREPAWSP 432 (433)
T ss_pred eEEcccCCCCCCCCccCC
Confidence 666666777788888886
No 214
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.65 E-value=3e-16 Score=161.34 Aligned_cols=259 Identities=20% Similarity=0.232 Sum_probs=196.3
Q ss_pred CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC
Q 008393 259 TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS 338 (567)
Q Consensus 259 ~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs 338 (567)
++..|..+++|...++ .+...++||.+.|+.++.+.+..++|+++.|..|++|.+.++.++..+.+|++.|++|+|+
T Consensus 207 tgsdd~lvKiwS~et~---~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 207 TGSDDRLVKIWSMETA---RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred ecCccceeeeeeccch---hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccC
Confidence 4556777888986665 6788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCc--eeEEec-cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGY--SLRTFM-GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~--~~~~~~-~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
|-. +.+.||++++||.+-... .-+-.. ....-+.++.|..++..++ |++.|+.-..|.+....+......
T Consensus 284 P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~-Tgs~d~ea~n~e~~~l~~~~~~li-- 356 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL-TGSRDGEARNHEFEQLAWRSNLLI-- 356 (1113)
T ss_pred ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc-cccCCcccccchhhHhhhhccceE--
Confidence 964 778899999999871010 000011 1235566777777766555 999999999998764332211100
Q ss_pred eEEEEecCC-CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC-CEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 416 AQMRFQPHL-GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG-ELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 416 ~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g-~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+..+.+. ...+++-.+-.+.+|++.++...+.+.+|...+..+.++|-+ .+..+++.| ...|||+-.+.. +.
T Consensus 357 -f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~p---ik 432 (1113)
T KOG0644|consen 357 -FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIP---IK 432 (1113)
T ss_pred -EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCc---ce
Confidence 01111111 344555567789999999999999999999999999999954 455577777 999999987643 33
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.+......+....|+++|..++....-|.++|.....++
T Consensus 433 ~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 433 HYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 333346777888999999999998888999999876554
No 215
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=2.8e-15 Score=144.22 Aligned_cols=193 Identities=22% Similarity=0.260 Sum_probs=141.2
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 333 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
.+++|+.+|..|++++.||++|||++.+ ...+.....|...|.+|.|+||++.++ +-+.| ..+||+.+++.++....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-~~t~l~e~~~~~eV~DL~FS~dgk~la-sig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-MLTILEEIAHHAEVKDLDFSPDGKFLA-SIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-chhhhhhHhhcCccccceeCCCCcEEE-EecCC-ceEEEEeccCchhhhcC
Confidence 7899999999999999999999999876 555666778999999999999987554 77777 89999999885544332
Q ss_pred CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC---CEEEEE--eCC-eEEEEeCCCCC
Q 008393 413 GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG---ELLASV--SED-SVRVWTVGSGS 486 (567)
Q Consensus 413 ~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g---~~l~s~--s~d-~I~iwd~~~~~ 486 (567)
.. .....+..+.|+.|+ .+++.+ ... .|+.||+....
T Consensus 225 ~~-------------------------------------~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 225 PF-------------------------------------SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred Cc-------------------------------------ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 10 011223344455444 222222 222 56666654332
Q ss_pred CC--ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 487 EG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 487 ~~--~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.. -...........|.+++++.+|++++.|+.+|.|-||+..+-+.+ ....|...|+.+.|+||.+++++.+.|..
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc
Confidence 21 122223334557999999999999999999999999999998877 44589999999999999999999888877
Q ss_pred EEE
Q 008393 563 VKL 565 (567)
Q Consensus 563 I~i 565 (567)
+.|
T Consensus 348 ~~v 350 (398)
T KOG0771|consen 348 AAV 350 (398)
T ss_pred eeE
Confidence 665
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.7e-14 Score=135.09 Aligned_cols=261 Identities=13% Similarity=0.193 Sum_probs=195.0
Q ss_pred cCCCCeEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCeeeeee------cccCccEEEEEECCCCCeEEEEeCCCcEEEE
Q 008393 285 ASTSKVICCHFSSDGK--LLATGGHDKKAVLWHTDTLKSKTNL------EEHSSLITDVRFSPSMPRLATSSFDKTVRVW 356 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~--~lasg~~dg~I~vwd~~~~~~~~~l------~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw 356 (567)
.-...|..++|--|++ .|...+.+..+..+.+..+.+...+ ......|..++.. ...|++|-.+|.+.+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVR 130 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEE
Confidence 3455677788876654 4444446667777777665554443 3445566666654 2378899999999999
Q ss_pred EcCCCC---ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeEEEeC------------CeeEEE
Q 008393 357 DADNPG---YSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRVFKG------------GTAQMR 419 (567)
Q Consensus 357 d~~~~~---~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~~~~~~~~------------~~~~~~ 419 (567)
....+. ..+..+..+ ..+..+.-++...+++++|+.. ..++|||++..+.+..-+. -.+.+.
T Consensus 131 ~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred eccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 988422 222333323 5577788888888899999999 8999999998865554332 234567
Q ss_pred EecC--CCEEEEEECCCeEEEEECCCC-eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 420 FQPH--LGRYLAAAAENVVSILDAETQ-ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 420 ~~~~--~~~l~~~~~dg~I~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
|.+. ...|++++.-+.|++||.+.+ +++..+.-.+.+|+++...|+|++|++|..- .+..||++.+.. ....+.
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl--~g~~~k 287 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL--LGCGLK 287 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee--eccccC
Confidence 8777 788999999999999999987 7788888888999999999999999999888 999999987732 223367
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spd 550 (567)
+..+.+.++..+|.+++|+++|-|..|+|+|+.+.+.+.-..-...+++|.+.++
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD 342 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence 7788999999999999999999999999999999766533333445666666443
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=5.5e-14 Score=148.39 Aligned_cols=252 Identities=19% Similarity=0.299 Sum_probs=187.9
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccC---CCcEEEEEEcC-C
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGH---SASVMSLDFHP-N 383 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~~p-~ 383 (567)
+..|..||... ..+....-..+.|+|-...++++.....|+|||.+. +..+..|..+ ...|+.+.+.. +
T Consensus 1049 t~~i~~W~~~~------~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-~~~l~~F~n~~~~~t~Vs~l~liNe~ 1121 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF------MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEK-GRLLNGFDNGAFPDTRVSDLELINEQ 1121 (1387)
T ss_pred cccccchHHHH------HhcCCCCCceeeecCCCceeEEcCCcceEEEEeccc-CceeccccCCCCCCCccceeeeeccc
Confidence 34466776431 112222456778899888999999888899999997 5556555533 36788888853 3
Q ss_pred CCeEEEEEeCCCcEEEEECCC-----CeeeEEEeC----------CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE
Q 008393 384 KDDLICSCDGDGEIRYWSINN-----GSCTRVFKG----------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL 448 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~-----~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~ 448 (567)
...++++|+.||.|+||+--. .+.+..+.+ ....+.|.-..+++++++.-..|+|||..+..++.
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe
Confidence 455777999999999997532 223332221 12445688888999999999999999999988777
Q ss_pred EecC-CCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc--eEEEEEeCCCC-eEEEEEcCCeE
Q 008393 449 SLQG-HTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK--FHSCVFHPTYP-SLLVIGCYQSL 522 (567)
Q Consensus 449 ~~~~-h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~--i~~~~~sp~~~-~l~~~~~dg~I 522 (567)
.+.. ...-|+++.-+- .|++|++|..| .|++||.+.......+...+.|... |..+.+.+.|- .|++|+.+|.|
T Consensus 1202 diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeE
Confidence 6654 344566665443 57899999999 9999999987665667777777776 99999998665 49999999999
Q ss_pred EEEECCCCcEE---Eecccc--C-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 523 ELWNMSENKTM---TLTAHE--G-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 523 ~iwd~~~~~~~---~~~~h~--~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++||++..... .+..|. + .++++..+++...||+|+. +.|+||+
T Consensus 1282 ~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1282 QLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred EEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEe
Confidence 99999984322 444444 4 5999999999999999998 8999996
No 218
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.63 E-value=7.3e-12 Score=126.90 Aligned_cols=271 Identities=14% Similarity=0.177 Sum_probs=185.9
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----CCcEEEEeCCCC--e--eeeeecccCccEEEEEECCCCCeEEEE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGH----DKKAVLWHTDTL--K--SKTNLEEHSSLITDVRFSPSMPRLATS 347 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----dg~I~vwd~~~~--~--~~~~l~~h~~~V~~i~fsp~~~~l~s~ 347 (567)
.+..+..+. -......+++++++++|.+... ++.|..|++... + .+............++++|++++|+++
T Consensus 26 ~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 26 TLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp EEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred CceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence 344444432 3344557999999999998876 578999987653 3 333444345566789999999999988
Q ss_pred eC-CCcEEEEEcCCCCceeEE---ec----------cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe--eeE--
Q 008393 348 SF-DKTVRVWDADNPGYSLRT---FM----------GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS--CTR-- 409 (567)
Q Consensus 348 s~-dg~I~iwd~~~~~~~~~~---~~----------~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~--~~~-- 409 (567)
.. +|.|.++++...+..... +. .......++.|+|+++.++++.-....|.+|++.... ...
T Consensus 105 ny~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~ 184 (345)
T PF10282_consen 105 NYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD 184 (345)
T ss_dssp ETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE
T ss_pred EccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee
Confidence 75 899999999875543322 11 1235678999999999888777667789999998765 322
Q ss_pred EEe----CCeeEEEEecCCCEEEEEEC-CCeEEEEECC--CCe--EEEEecCC------CCCeeEEEEcCCCCEEEEEeC
Q 008393 410 VFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDAE--TQA--CRLSLQGH------TKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ~~~----~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~--~~~--~~~~~~~h------~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+. .+...+.|+|++.++++..+ ++.|.+|++. ++. .+..+... ......|+++|||++|+++..
T Consensus 185 ~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr 264 (345)
T PF10282_consen 185 SIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR 264 (345)
T ss_dssp EEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec
Confidence 222 25678999999999888877 7789999887 442 22232211 125778999999999999886
Q ss_pred C--eEEEEeCC-CCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-CeEEEEEC--CCCcEEEec--cccCCeeEEE
Q 008393 475 D--SVRVWTVG-SGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-QSLELWNM--SENKTMTLT--AHEGLIAALA 546 (567)
Q Consensus 475 d--~I~iwd~~-~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-g~I~iwd~--~~~~~~~~~--~h~~~V~~l~ 546 (567)
+ .|.+|++. .......+..+...+.....++++|+|++|+++..+ +.|.+|++ .++...... ..-....||.
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~ 344 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIV 344 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEe
Confidence 6 89999994 333456666777667778999999999999998855 58888866 466554322 2334455665
Q ss_pred E
Q 008393 547 V 547 (567)
Q Consensus 547 ~ 547 (567)
|
T Consensus 345 f 345 (345)
T PF10282_consen 345 F 345 (345)
T ss_dssp E
T ss_pred C
Confidence 5
No 219
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.63 E-value=2.4e-14 Score=134.09 Aligned_cols=251 Identities=17% Similarity=0.271 Sum_probs=191.6
Q ss_pred ccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeC-CCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCc
Q 008393 275 FSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHT-DTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 275 ~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~-~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~ 352 (567)
+.+..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++.-..+. .....++++.+.++...|++|-..|+
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence 445677889999999999999998889999999999999953 3444433333 34567999999999999999999999
Q ss_pred EEEEEcCCC---CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEE
Q 008393 353 VRVWDADNP---GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRY 427 (567)
Q Consensus 353 I~iwd~~~~---~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l 427 (567)
+.-+.+... ....+.+..|...|..+-|+-.-+ ++++++.|..+.---.+.+..+..+ ......+.+.-. ..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~ 168 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA 168 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence 999877542 234566778999999999987644 5668888887766555655544332 222222222222 45
Q ss_pred EEEECCCeEEEEE--CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEE
Q 008393 428 LAAAAENVVSILD--AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSC 504 (567)
Q Consensus 428 ~~~~~dg~I~i~d--~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~ 504 (567)
+++...|.|.+.. ...-..+.++.+|.+.+.+++|.+...+|.+|..| .|.+||+.-. .....++.+|...+..+
T Consensus 169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~--~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR--KGTAYELQGHNDKVQAL 246 (404)
T ss_pred EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC--cceeeeeccchhhhhhh
Confidence 5555566665544 34557788999999999999999999999999999 9999999643 35667888889999988
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
..-+.-+.+++++.||.|.+|+++..
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccce
Confidence 88888889999999999999998754
No 220
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=9.8e-13 Score=130.95 Aligned_cols=268 Identities=19% Similarity=0.329 Sum_probs=181.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-----eCC-----CcEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-----SFD-----KTVRVW 356 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-----s~d-----g~I~iw 356 (567)
..++...+++++|+++|.+. +..++|++..++..+.+...- .+.++.|+|.+++|.+= ..+ -.+.+|
T Consensus 34 ~~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~ 110 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVY 110 (566)
T ss_pred CCcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeee
Confidence 34477889999999998774 778999999888655544433 68999999999988652 112 346788
Q ss_pred EcCCCCceeEEec----------------------------------------cCCCcEEEEEEcCCC-CeEEEE-----
Q 008393 357 DADNPGYSLRTFM----------------------------------------GHSASVMSLDFHPNK-DDLICS----- 390 (567)
Q Consensus 357 d~~~~~~~~~~~~----------------------------------------~h~~~V~~l~~~p~~-~~li~s----- 390 (567)
++++ +.....+. -|...|..+.++|.. ...+++
T Consensus 111 ~vet-~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~ 189 (566)
T KOG2315|consen 111 NVET-GVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK 189 (566)
T ss_pred eecc-ceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence 8876 32211111 234456666666652 223322
Q ss_pred EeCCCcEEEEECCCCee------eEEEeCCeeEEEEecCCCEEEEEE-C-----------CCeEEEEECCCCeEEEEecC
Q 008393 391 CDGDGEIRYWSINNGSC------TRVFKGGTAQMRFQPHLGRYLAAA-A-----------ENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~-~-----------dg~I~i~d~~~~~~~~~~~~ 452 (567)
.+.-+.|+||....... ..-|+.....+.|++.+.-|++.. . +..++++++....+...+.
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~- 268 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL- 268 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-
Confidence 23345677777652221 122445566678888776554432 2 2478888888555555554
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 526 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd 526 (567)
..++|.+++|+++|+-++++. .- ++.|||++. .-.+....++-.++-|+|.|++|+.+|-+ |.|.|||
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~------~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG------KPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC------CEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 478999999999998665543 33 899999953 23344456778888999999999998876 6999999
Q ss_pred CCCCcEE-EeccccCCeeEEEEecCCCEEEEEEC------CCcEEEcC
Q 008393 527 MSENKTM-TLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iWd 567 (567)
+.+.+.+ .+.... -+-+.|+|||.+|+|+.. |+.++||+
T Consensus 343 v~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 343 VPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred ccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 9997766 333322 345789999999998873 68889985
No 221
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.7e-13 Score=141.47 Aligned_cols=233 Identities=18% Similarity=0.156 Sum_probs=158.2
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+ +.. ..+....+.+.+..|+|+|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 467777774 45555566778889999999999999887753 3599999987 332 23333445667899999999
Q ss_pred eEEEEEeCCCcEEEEE--CCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCCCCee
Q 008393 386 DLICSCDGDGEIRYWS--INNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHTKPID 458 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd--~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~~~V~ 458 (567)
.++++.+.++...||. +..+....... .......|+|++..++..+. ++ .|+++++.+++..... .+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence 9888888888766654 54444332222 22456789999998887665 34 4555565655433222 2223345
Q ss_pred EEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCc
Q 008393 459 SVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENK 531 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~ 531 (567)
..+|+|||++|+..+.+ .|.+||+.++.. ..+.. ........|+||++.|+.++.++ .+++.++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~ 406 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI 406 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence 68899999999877643 599999987632 12221 22335679999999998887654 57777886554
Q ss_pred EEEeccccCCeeEEEEecC
Q 008393 532 TMTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 532 ~~~~~~h~~~V~~l~~spd 550 (567)
...+..+.+.+...+|+|-
T Consensus 407 ~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 407 KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eEEeecCCCCCCCCccCCC
Confidence 5466667788888899873
No 222
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=4.1e-13 Score=125.10 Aligned_cols=270 Identities=14% Similarity=0.202 Sum_probs=197.7
Q ss_pred CCCeEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATG-GHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg-~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
-..|.-+.|..|..+++++ ..|+.|.+|++...+-...+....+.+..+.|+|||+ .|.+...|-.|.||.+.+....
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 3566778888888766654 5688999999998888889999999999999999996 5566777999999999874332
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeC-----------------------------------CCcEEEEECCCCeeeE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDG-----------------------------------DGEIRYWSINNGSCTR 409 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----------------------------------dg~I~iwd~~~~~~~~ 409 (567)
.+.-.+..+..++|+|+|....+..-. +..+.+||.--.-.+.
T Consensus 128 --~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~ 205 (447)
T KOG4497|consen 128 --LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY 205 (447)
T ss_pred --EecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee
Confidence 222234456888899988754432211 2234455432222222
Q ss_pred EEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEE--------------------------------------
Q 008393 410 VFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLS-------------------------------------- 449 (567)
Q Consensus 410 ~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-------------------------------------- 449 (567)
.+. -++..+.|+|.+..+++|+.|+.+++.+--+.+....
T Consensus 206 aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~ 285 (447)
T KOG4497|consen 206 AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLE 285 (447)
T ss_pred eeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccc
Confidence 222 3677889999999999999999888765433222111
Q ss_pred ----------------------ec------CCCCCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEeecCC
Q 008393 450 ----------------------LQ------GHTKPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 450 ----------------------~~------~h~~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
++ ...-.+.-++|++|..++++-.+. .+-+||+... .++.+-...
T Consensus 286 a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk 361 (447)
T KOG4497|consen 286 AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQK 361 (447)
T ss_pred cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhc
Confidence 11 011235668999999999998876 6999999764 333444457
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCc
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+|....|+|....|+++.....+++|.......+......-.|..+.|.-+|..++.++.|..
T Consensus 362 ~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 362 HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred cceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence 7899999999999999999989999999988777777666678999999999999999998853
No 223
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.60 E-value=8.2e-14 Score=130.49 Aligned_cols=275 Identities=18% Similarity=0.306 Sum_probs=187.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----eeeeeccc------------CccEEEEEECCCCC--eEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEH------------SSLITDVRFSPSMP--RLATS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h------------~~~V~~i~fsp~~~--~l~s~ 347 (567)
..-|.++.|..+|.+||||..+|.|.+|.-+... ....+..| ...|..|.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 4568899999999999999999999999654322 22333333 34588999998765 67888
Q ss_pred eCCCcEEEEEcCCCCcee----------------------------------EE-eccCCCcEEEEEEcCCCCeEEEEEe
Q 008393 348 SFDKTVRVWDADNPGYSL----------------------------------RT-FMGHSASVMSLDFHPNKDDLICSCD 392 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~----------------------------------~~-~~~h~~~V~~l~~~p~~~~li~s~~ 392 (567)
+.|.+|++|.+...+... +. -.+|.-.|.+|.++.|...++ ++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec-
Confidence 899999999886422111 11 126888899999999987666 54
Q ss_pred CCCcEEEEECCCCeeeE---EEe--------CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEE----EEec-----
Q 008393 393 GDGEIRYWSINNGSCTR---VFK--------GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR----LSLQ----- 451 (567)
Q Consensus 393 ~dg~I~iwd~~~~~~~~---~~~--------~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~----~~~~----- 451 (567)
.|-.|.+|+++--..-. .++ .-++...|+|.. +.++..+..|.|++.|++....- ..+.
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 48899999987433211 112 134566788875 45666777999999999843211 1111
Q ss_pred -------CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCC------------c---eEEEEEeCC
Q 008393 452 -------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN------------K---FHSCVFHPT 509 (567)
Q Consensus 452 -------~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~------------~---i~~~~~sp~ 509 (567)
+--..|..+.|+++|+|+++-..-+|++||+.... +.+.++..|.. . -..|+|+.+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 11245788999999999998777799999996433 33444433321 1 245789999
Q ss_pred CCeEEEEEcCCeEEEEECCCCcEE--Ee--------------------cc-------------ccCCeeEEEEecCCCEE
Q 008393 510 YPSLLVIGCYQSLELWNMSENKTM--TL--------------------TA-------------HEGLIAALAVSTETGYV 554 (567)
Q Consensus 510 ~~~l~~~~~dg~I~iwd~~~~~~~--~~--------------------~~-------------h~~~V~~l~~spdg~~l 554 (567)
+.++++|+..+.+++|++..|... ++ .+ ....|...+|+|..+.|
T Consensus 341 ~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~i 420 (433)
T KOG1354|consen 341 DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSI 420 (433)
T ss_pred cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCcccee
Confidence 999999999999999996554321 00 01 01124456899999999
Q ss_pred EEEECCCcEEEc
Q 008393 555 ASASHDKFVKLW 566 (567)
Q Consensus 555 ~s~s~Dg~I~iW 566 (567)
|.+..+. ++||
T Consensus 421 a~aatnn-lyif 431 (433)
T KOG1354|consen 421 AVAATNN-LYIF 431 (433)
T ss_pred eeeecCc-eEEe
Confidence 8887654 5554
No 224
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=1.8e-11 Score=123.98 Aligned_cols=266 Identities=16% Similarity=0.175 Sum_probs=179.4
Q ss_pred EEEEeCC----CcEEEEeC--CCCeeeeee-cccCccEEEEEECCCCCeEEEEeC----CCcEEEEEcCCC-Cc--eeEE
Q 008393 302 LATGGHD----KKAVLWHT--DTLKSKTNL-EEHSSLITDVRFSPSMPRLATSSF----DKTVRVWDADNP-GY--SLRT 367 (567)
Q Consensus 302 lasg~~d----g~I~vwd~--~~~~~~~~l-~~h~~~V~~i~fsp~~~~l~s~s~----dg~I~iwd~~~~-~~--~~~~ 367 (567)
+++|+.. +.|.+|++ ++++....- .........++++|++++|++... ++.|..|++... +. .+..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 4556555 68888887 444443221 123445677899999999999877 568999998864 22 2223
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE---Ee-------------CCeeEEEEecCCCEEEEE
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---FK-------------GGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~---~~-------------~~~~~~~~~~~~~~l~~~ 430 (567)
..........++++|+++.++++...+|.|.++++.. +..... +. .+..++.++|+++++++.
T Consensus 82 ~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~ 161 (345)
T PF10282_consen 82 VPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVP 161 (345)
T ss_dssp EEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEE
T ss_pred eccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEE
Confidence 3324455678999999999988877899999999987 443322 21 245689999999998887
Q ss_pred EC-CCeEEEEECCCCe--E--EEEec-CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC-CCCceEEEeecC----
Q 008393 431 AA-ENVVSILDAETQA--C--RLSLQ-GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSCN---- 497 (567)
Q Consensus 431 ~~-dg~I~i~d~~~~~--~--~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~~---- 497 (567)
.. ...|.+|++.... . ...+. .....-+.++|+|++++++...+. .|.+|++... .....+..+...
T Consensus 162 dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~ 241 (345)
T PF10282_consen 162 DLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGF 241 (345)
T ss_dssp ETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTS
T ss_pred ecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccc
Confidence 76 5689999987654 2 22222 234567899999999999888866 8999998722 122333333321
Q ss_pred --CCceEEEEEeCCCCeEEEEEc-CCeEEEEECC--CCcEE---EeccccCCeeEEEEecCCCEEEEEEC-CCcEEEcC
Q 008393 498 --GNKFHSCVFHPTYPSLLVIGC-YQSLELWNMS--ENKTM---TLTAHEGLIAALAVSTETGYVASASH-DKFVKLWK 567 (567)
Q Consensus 498 --~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~--~~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iWd 567 (567)
......++++|||++|+++.. .+.|.+|++. +++.. .+.......+.++++|+|++|+++.. ++.|.+|+
T Consensus 242 ~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 242 TGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp CSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred cccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence 125788999999999998875 4689999993 34433 22233445899999999999998874 56788763
No 225
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=2.7e-13 Score=145.44 Aligned_cols=249 Identities=19% Similarity=0.264 Sum_probs=174.1
Q ss_pred EeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCC------ceeEEeccCCCcEEEEEEcCCCCe
Q 008393 314 WHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPG------YSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 314 wd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
|+. .|..+..+..|...|..++.++.. .++++|+.||+|++|+...-. ....++......+.++.+.+.++.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 554 578888999999999999988765 899999999999999986411 123344446788999999998876
Q ss_pred EEEEEeCCCcEEEEECCCCee-------eEEEe----CCeeEE-EEec-CCC-EEEEEECCCeEEEEECCCCeEEEEecC
Q 008393 387 LICSCDGDGEIRYWSINNGSC-------TRVFK----GGTAQM-RFQP-HLG-RYLAAAAENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~-------~~~~~----~~~~~~-~~~~-~~~-~l~~~~~dg~I~i~d~~~~~~~~~~~~ 452 (567)
++ .++.||.|.+.++..... .+..+ +.+..+ ++.. ... .++++...+.|..||+++.....+++.
T Consensus 1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 66 568999999999986321 11111 111221 2222 223 677778889999999998766655543
Q ss_pred --CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCC---CeEEEEE--cCCeEE
Q 008393 453 --HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTY---PSLLVIG--CYQSLE 523 (567)
Q Consensus 453 --h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~---~~l~~~~--~dg~I~ 523 (567)
..+.|++++.+|.+.+++.|+.. .+.+||++-+ ..+.... .+..++..+..+|-. ...++++ ..+.|.
T Consensus 1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence 45789999999999999999988 9999999865 3333322 334666666666644 3455444 457999
Q ss_pred EEECCCCcEE-Eeccc-------------------cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 524 LWNMSENKTM-TLTAH-------------------EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 524 iwd~~~~~~~-~~~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|++.++... .+... .-.....++...+.++.+|+.|..|+.||
T Consensus 1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence 9999988644 11111 11222334444567899999999999998
No 226
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=1.9e-14 Score=142.07 Aligned_cols=214 Identities=19% Similarity=0.284 Sum_probs=156.1
Q ss_pred eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCcEE
Q 008393 320 KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGEIR 398 (567)
Q Consensus 320 ~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~I~ 398 (567)
.....|.+|.+.|+|+.|+.+|.+|++|++|-.+.|||.-..+.....-++|...|.++.|.|. ++.++++|..|..|+
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4456788999999999999999999999999999999998644444556799999999999885 467888999999999
Q ss_pred EEECCCCee----------eEEEe---CCeeEEEEecCC-CEEEEEECCCeEEEEECCCCeEE-------E---EecCCC
Q 008393 399 YWSINNGSC----------TRVFK---GGTAQMRFQPHL-GRYLAAAAENVVSILDAETQACR-------L---SLQGHT 454 (567)
Q Consensus 399 iwd~~~~~~----------~~~~~---~~~~~~~~~~~~-~~l~~~~~dg~I~i~d~~~~~~~-------~---~~~~h~ 454 (567)
+||+...+. .+.+. ..+..++..|++ ..+.+++.||+|+-||++....- . .+...-
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l 200 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL 200 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence 999985321 11122 234556777777 67888999999999999873211 0 111112
Q ss_pred CCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCC--------C-------CCceEEEeec-C--------C---CceEEEE
Q 008393 455 KPIDSVCWDPS-GELLASVSED-SVRVWTVGSG--------S-------EGECVHELSC-N--------G---NKFHSCV 505 (567)
Q Consensus 455 ~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~--------~-------~~~~i~~~~~-~--------~---~~i~~~~ 505 (567)
-...|+.++|. ..+|++|+.| ..++||.+.. . ...|+.-+.. | . ..++.+.
T Consensus 201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vt 280 (758)
T KOG1310|consen 201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVT 280 (758)
T ss_pred heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEE
Confidence 34678899995 4588999999 9999995421 0 0012222211 1 1 1145678
Q ss_pred EeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 506 FHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 506 ~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
|+|+|.-|++.-....|+++|+..++..
T Consensus 281 fnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 281 FNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred ECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 9999999998888889999999887644
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.58 E-value=3.9e-13 Score=140.20 Aligned_cols=221 Identities=18% Similarity=0.232 Sum_probs=151.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEE-EEeCCCcEEEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKTVRVW 356 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~-s~s~dg~I~iw 356 (567)
..+..+...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +....+.+.+..|+|||+.|+ +.+.+|...||
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy 267 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIY 267 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEE
Confidence 4455778889999999999999887643 359999999886543 333445567899999999886 46778877777
Q ss_pred EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC--CCCeeeEEE-eC-CeeEEEEecCCCEEEEEEC
Q 008393 357 DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI--NNGSCTRVF-KG-GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 357 d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~--~~~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~ 432 (567)
.++..+.....+..+...+....|+|||+.+++++..++...+|.+ .++...... .+ ......|+|++..++..+.
T Consensus 268 ~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~ 347 (427)
T PRK02889 268 TVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISR 347 (427)
T ss_pred EEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEc
Confidence 6543333455666666667788999999988877665666666654 455433322 22 2345789999999988776
Q ss_pred CC---eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 433 EN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 433 dg---~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
++ .|.+||+.+++...... . .....+.|+|||++|+..+.+ .+.+.++. + .....+..+.+.+...+
T Consensus 348 ~~g~~~I~v~d~~~g~~~~lt~-~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ 421 (427)
T PRK02889 348 VGGAFKLYVQDLATGQVTALTD-T-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPS 421 (427)
T ss_pred cCCcEEEEEEECCCCCeEEccC-C-CCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCc
Confidence 54 69999999887553322 2 334678999999998888754 35555653 2 23334444445566667
Q ss_pred EeC
Q 008393 506 FHP 508 (567)
Q Consensus 506 ~sp 508 (567)
|+|
T Consensus 422 wsp 424 (427)
T PRK02889 422 WGP 424 (427)
T ss_pred cCC
Confidence 776
No 228
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.58 E-value=6.8e-12 Score=127.10 Aligned_cols=252 Identities=16% Similarity=0.160 Sum_probs=164.0
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEE
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRV 355 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~i 355 (567)
.+.+..+......-..+.|++||+++++++.||.|.++|+.+.+.+.++..-.. ...+++++||+++++++ .++.+.|
T Consensus 26 ~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 26 NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp -SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeE
Confidence 356666665544445578999999999999999999999999999999986444 67899999999998776 5899999
Q ss_pred EEcCCCCceeEEecc-------CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee--EEEeC--CeeEEEEecCC
Q 008393 356 WDADNPGYSLRTFMG-------HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT--RVFKG--GTAQMRFQPHL 424 (567)
Q Consensus 356 wd~~~~~~~~~~~~~-------h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~~--~~~~~~~~~~~ 424 (567)
+|.++ .+.+..+.. ....+..|..++....++++.-+.+.|.+.|....+.+ ..+.. ......|.|++
T Consensus 105 ~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdg 183 (369)
T PF02239_consen 105 IDAET-LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDG 183 (369)
T ss_dssp EETTT---EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTS
T ss_pred ecccc-ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccc
Confidence 99988 555555432 23467777777877767766666688888887765433 22322 34567788888
Q ss_pred CEEEEEEC-CCeEEEEECCCCeEEEEec----------------------------------------------------
Q 008393 425 GRYLAAAA-ENVVSILDAETQACRLSLQ---------------------------------------------------- 451 (567)
Q Consensus 425 ~~l~~~~~-dg~I~i~d~~~~~~~~~~~---------------------------------------------------- 451 (567)
.+++++.. ++.|.++|.++++.+..+.
T Consensus 184 ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~ 263 (369)
T PF02239_consen 184 RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVK 263 (369)
T ss_dssp SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEE
T ss_pred ceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEE
Confidence 87766544 5677777777665544321
Q ss_pred ---CCCCCeeEEEEcCCCCEEEEE---eCC--eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEcCC--
Q 008393 452 ---GHTKPIDSVCWDPSGELLASV---SED--SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ-- 520 (567)
Q Consensus 452 ---~h~~~V~~l~~sp~g~~l~s~---s~d--~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg-- 520 (567)
..... .-+..+|+++++++. +.+ .|.++|.++. +.+..+.. ....+..+.|+++|++++++..++
T Consensus 264 ~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl---~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 264 TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL---KVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT---EEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT
T ss_pred EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc---ceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC
Confidence 11112 234558999999988 444 8999999876 45555532 233588999999999888876654
Q ss_pred eEEEEECCCCcEEE
Q 008393 521 SLELWNMSENKTMT 534 (567)
Q Consensus 521 ~I~iwd~~~~~~~~ 534 (567)
.|.+||..+.+...
T Consensus 340 ~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 340 AIVVYDAKTLKEKK 353 (369)
T ss_dssp EEEEEETTTTEEEE
T ss_pred EEEEEECCCcEEEE
Confidence 69999999998773
No 229
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=1.3e-12 Score=121.66 Aligned_cols=228 Identities=13% Similarity=0.212 Sum_probs=165.4
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee-EEeccCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCC
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINN 404 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~ 404 (567)
...++|+.|...+++|..+| .+||+.+--++.. +.+....-.+..+-|- .+.+.+.|+.+ +.|.|||-..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEeccc
Confidence 45589999999999999998 9999998522211 1111111223333333 34566666655 5799999777
Q ss_pred CeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCC--eE
Q 008393 405 GSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLSLQGH--TKPIDSVCWDPSGELLASVSED--SV 477 (567)
Q Consensus 405 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d--~I 477 (567)
.+++..+ ..++..+.+.++ .++...++.|++|... +.+.++.+... ...+.+++-..+..+||.-+.. .|
T Consensus 85 ~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gqv 161 (346)
T KOG2111|consen 85 ERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQV 161 (346)
T ss_pred CcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceE
Confidence 7777654 567788888765 5566678899999887 44555555432 2345555544456677777765 79
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCe-EEEEECCCCcEE-Eec--cccCCeeEEEEecCCCE
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQS-LELWNMSENKTM-TLT--AHEGLIAALAVSTETGY 553 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~-I~iwd~~~~~~~-~~~--~h~~~V~~l~~spdg~~ 553 (567)
.|-|+...... .-..+..|...|.+++++-+|..+++++..|+ |+|||..+++.+ ++. .....|.+++|||++.+
T Consensus 162 Qi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 162 QIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred EEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccE
Confidence 99999765321 34677889999999999999999999999995 799999999887 433 34467999999999999
Q ss_pred EEEEECCCcEEEc
Q 008393 554 VASASHDKFVKLW 566 (567)
Q Consensus 554 l~s~s~Dg~I~iW 566 (567)
||++++.|+|.||
T Consensus 241 LavsSdKgTlHiF 253 (346)
T KOG2111|consen 241 LAVSSDKGTLHIF 253 (346)
T ss_pred EEEEcCCCeEEEE
Confidence 9999999999987
No 230
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.58 E-value=2.3e-12 Score=126.84 Aligned_cols=270 Identities=16% Similarity=0.236 Sum_probs=191.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCC---------------CcEEEEeCCCCeeeeeecccCcc--EE-EEEECCCCCeEEEEe
Q 008393 287 TSKVICCHFSSDGKLLATGGHD---------------KKAVLWHTDTLKSKTNLEEHSSL--IT-DVRFSPSMPRLATSS 348 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~d---------------g~I~vwd~~~~~~~~~l~~h~~~--V~-~i~fsp~~~~l~s~s 348 (567)
...|..+.|+|.++||.+=... +.+.+||..++..+..+..-... .+ -+.|+.+.+|+|-..
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 3457789999999999885533 35999999999999999877666 66 788998888776553
Q ss_pred CCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeE-EE-----EEeCCCcEEEEECCCCeeeEE---EeCCeeEE
Q 008393 349 FDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDL-IC-----SCDGDGEIRYWSINNGSCTRV---FKGGTAQM 418 (567)
Q Consensus 349 ~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~l-i~-----s~~~dg~I~iwd~~~~~~~~~---~~~~~~~~ 418 (567)
...++|+++ +......-+... ...|....|+|.+++- |+ ..+.++.+++|.+..++.+.. ++.....+
T Consensus 151 -~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qL 228 (561)
T COG5354 151 -GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQL 228 (561)
T ss_pred -cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEE
Confidence 345999997 322221111111 3567888888874332 22 245688999999997766544 44566788
Q ss_pred EEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCC
Q 008393 419 RFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGS 484 (567)
Q Consensus 419 ~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~ 484 (567)
.|.+.+..+++-.. +..++|+++....+.... +-.++|...+|.|.++.+++.+ .. .+.++|++.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 89999988776432 357888988855444333 5678999999999888777665 45 899999975
Q ss_pred CCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEE--eccccCCeeEEEEecCCCEEEEEE-
Q 008393 485 GSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMT--LTAHEGLIAALAVSTETGYVASAS- 558 (567)
Q Consensus 485 ~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~--~~~h~~~V~~l~~spdg~~l~s~s- 558 (567)
. . .+......-..+.|+|.++++++++-+ |.|.+||......+. +.+. ..+-+.|+||+.++.+..
T Consensus 308 N----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~t 379 (561)
T COG5354 308 N----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTT 379 (561)
T ss_pred c----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCC
Confidence 3 1 222334445566999999999998877 589999998776553 3332 344567999999887664
Q ss_pred -----CCCcEEEcC
Q 008393 559 -----HDKFVKLWK 567 (567)
Q Consensus 559 -----~Dg~I~iWd 567 (567)
.|..|+||+
T Consensus 380 s~k~~~Dn~i~l~~ 393 (561)
T COG5354 380 SEKLRVDNSIKLWD 393 (561)
T ss_pred CcccccCcceEEEE
Confidence 478899986
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.3e-12 Score=136.14 Aligned_cols=219 Identities=16% Similarity=0.171 Sum_probs=151.4
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEE-eCCC--cEE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATS-SFDK--TVR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~-s~dg--~I~ 354 (567)
+.+..+...+.+.+|+|||+.|+..+. +..|++|++.+++... +......+..+.|+|||+.|+.. +.+| .|+
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 344556778999999999999987542 4579999998875433 22223335578999999988765 4455 488
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~ 430 (567)
+||+++ +.. ..+..+...+....|+|+|+.++++...++. |+++|+.++........ ......|+|++..++..
T Consensus 271 ~~d~~t-g~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 271 VMDLAS-GQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred EEECCC-CCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEE
Confidence 899986 333 4444455677889999999988877665554 55557776654433222 33568899999998887
Q ss_pred ECC---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e---EEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 431 AAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S---VRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 431 ~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~---I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
+.+ ..|.+||+.+++... +... .......|+|||++|+..+.+ . +.++++.. .....+..+...+..
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G----~~~~~l~~~~~~~~~ 422 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG----RFKARLPATDGQVKF 422 (429)
T ss_pred EccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCC----CCeEECccCCCCcCC
Confidence 654 368899998886543 3321 234467899999999988866 3 67777743 234455566677777
Q ss_pred EEEeC
Q 008393 504 CVFHP 508 (567)
Q Consensus 504 ~~~sp 508 (567)
.+|+|
T Consensus 423 p~Wsp 427 (429)
T PRK03629 423 PAWSP 427 (429)
T ss_pred cccCC
Confidence 78887
No 232
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.57 E-value=6.7e-14 Score=126.66 Aligned_cols=214 Identities=18% Similarity=0.223 Sum_probs=160.4
Q ss_pred CCccceeccCCccceeeeeec-cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--------------eec--
Q 008393 264 AGGRGMDVSQGFSFKEANSVR-ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--------------NLE-- 326 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--------------~l~-- 326 (567)
+.+.+|..... .....++ .|...|+.+..-|+ ..|.+-+.|+.+.+|++.-...+. .+.
T Consensus 35 G~V~~w~lqt~---r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~ 110 (323)
T KOG0322|consen 35 GIVKMWVLQTE---RDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKK 110 (323)
T ss_pred ceEEEEEeecC---ccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccC
Confidence 45677777655 3445566 57788999998887 467777899999999876421110 000
Q ss_pred -------------------------------------ccCccEEEEEECC-CCC--eEEEEeCCCcEEEEEcCCCCc---
Q 008393 327 -------------------------------------EHSSLITDVRFSP-SMP--RLATSSFDKTVRVWDADNPGY--- 363 (567)
Q Consensus 327 -------------------------------------~h~~~V~~i~fsp-~~~--~l~s~s~dg~I~iwd~~~~~~--- 363 (567)
...+.+.|..+.. +++ +|+.|..+|.|.+||+.++.+
T Consensus 111 ~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~ 190 (323)
T KOG0322|consen 111 PKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ 190 (323)
T ss_pred CCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec
Confidence 0223455555432 233 467788899999999987422
Q ss_pred ------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e-----eeEEEeCCeeEEEEecCCCEEEEE
Q 008393 364 ------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S-----CTRVFKGGTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 364 ------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~-----~~~~~~~~~~~~~~~~~~~~l~~~ 430 (567)
....+..|..+|.++.|.+.-+.=+ +|+.+..+..|++... . .+..-..++..+.+.|+++.++++
T Consensus 191 ~~~~~kv~~~~ash~qpvlsldyas~~~rGi-sgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATA 269 (323)
T KOG0322|consen 191 LPQSSKVESPNASHKQPVLSLDYASSCDRGI-SGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATA 269 (323)
T ss_pred cccccccccchhhccCcceeeeechhhcCCc-CCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeec
Confidence 2334457999999999987644444 7778888999988753 2 222334578889999999999999
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
+.|+.|++|..++..++..++-|...|.+++|+|+..++|.++.| .|.+|++
T Consensus 270 GWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 270 GWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred ccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999999999999999999999999 9999986
No 233
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1e-12 Score=137.44 Aligned_cols=231 Identities=18% Similarity=0.225 Sum_probs=158.6
Q ss_pred CccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCC
Q 008393 265 GGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM 341 (567)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~ 341 (567)
.+.+||... ...+.+..|...+.+.+|+|||+.|+..+.+ ..|++||+.+++... +..+.....++.|+|+|
T Consensus 185 ~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG 259 (433)
T PRK04922 185 ALQVADSDG----YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDG 259 (433)
T ss_pred EEEEECCCC----CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCC
Confidence 445566532 2345566778889999999999999987643 469999998876543 33344455688999999
Q ss_pred CeEE-EEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCc--EEEEECCCCeeeEEEe-C-C
Q 008393 342 PRLA-TSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGE--IRYWSINNGSCTRVFK-G-G 414 (567)
Q Consensus 342 ~~l~-s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~--I~iwd~~~~~~~~~~~-~-~ 414 (567)
+.|+ +.+.+| .|++||+.+ +. +..+..+.......+|+|+|+.++++...+|. |+++|+.+++..+... + .
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~-g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGS-RQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCC
Confidence 9775 445555 599999986 33 34555566666789999999988877666655 7777877776544322 2 2
Q ss_pred eeEEEEecCCCEEEEEECCC---eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCC
Q 008393 415 TAQMRFQPHLGRYLAAAAEN---VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE 487 (567)
Q Consensus 415 ~~~~~~~~~~~~l~~~~~dg---~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~ 487 (567)
.....|+|++..++....++ .|.+||+.+++.. .+. +........|+|||++|+..+.+ .|.++++..+
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~-- 413 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR-- 413 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC--
Confidence 34578999999988876543 6999999888765 333 22345567999999988877653 5778887432
Q ss_pred CceEEEeecCCCceEEEEEeC
Q 008393 488 GECVHELSCNGNKFHSCVFHP 508 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp 508 (567)
....+..+...+...+|+|
T Consensus 414 --~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 414 --VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred --ceEEcccCCCCCCCCccCC
Confidence 2333433445555566665
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.57 E-value=3.8e-13 Score=128.29 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=177.3
Q ss_pred cCccEEEEEECCCCC--eEEEEeCCCcEEEEEcCCCCce-----eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 328 HSSLITDVRFSPSMP--RLATSSFDKTVRVWDADNPGYS-----LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 328 h~~~V~~i~fsp~~~--~l~s~s~dg~I~iwd~~~~~~~-----~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
....|..++|.-+++ .|...+.|..+..+.+...+.. +.........|..+.... . .+++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g-~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD--G-TLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC--C-EEEEEecCCcEEEE
Confidence 345577777765544 3444446666777766652221 123344566777777652 2 45588999999999
Q ss_pred ECCCCe-----eeEEEe-CCeeEEEEecCCCEEEE-EECC--CeEEEEECCCCeEEEEecCCC---------CCeeEEEE
Q 008393 401 SINNGS-----CTRVFK-GGTAQMRFQPHLGRYLA-AAAE--NVVSILDAETQACRLSLQGHT---------KPIDSVCW 462 (567)
Q Consensus 401 d~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~-~~~d--g~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~ 462 (567)
..+.+. .+..-. .+...+.-.+....+++ |+.+ +.+.|||++..+.++.-+.-. -+++++.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 998443 222222 34556666666666666 6667 799999999987776654321 24678889
Q ss_pred cCC--CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--Eecc
Q 008393 463 DPS--GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTA 537 (567)
Q Consensus 463 sp~--g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~ 537 (567)
-+. ...||+++.- .|++||.+.+ .+++..+...+.++.++...|+++.|+++...+.+..||++.++.. .+.+
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~q--RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg 288 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQ--RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG 288 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCccc--CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC
Confidence 887 7889999888 9999999855 4677788888999999999999999999999999999999999887 4788
Q ss_pred ccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 538 HEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 538 h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+.|++|-.+|...+|++||-|..|||+|
T Consensus 289 ~tGsirsih~hp~~~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 289 ITGSIRSIHCHPTHPVLASCGLDRYVRIHD 318 (412)
T ss_pred ccCCcceEEEcCCCceEEeeccceeEEEee
Confidence 999999999999999999999999999987
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.3e-12 Score=135.06 Aligned_cols=220 Identities=13% Similarity=0.200 Sum_probs=153.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEE-EEeCCCc--
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLA-TSSFDKT-- 352 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~-s~s~dg~-- 352 (567)
..+.+..|...|.+.+|+|||+.|+..+. +..|++||+.+++.. .+..+.+.+.+..|+|||+.|+ +.+.++.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCce
Confidence 34556778889999999999999988764 468999999887653 4555666788999999999775 5555655
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEE
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYL 428 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 428 (567)
|++||+++ + ....+..+........|+|+|+.++++...+| .|++||+..+....... +......|+|++..++
T Consensus 272 Iy~~d~~~-~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 272 IYTMDLRS-G-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred EEEEECCC-C-ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEE
Confidence 77778876 3 33556666667778999999998887665544 68888988776554433 3345678999999998
Q ss_pred EEECC---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecCC
Q 008393 429 AAAAE---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 429 ~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
....+ ..|.+||+.++... .+. ....+..+.|+|||++|+..+.+ .|+++|+..+. ...+.. .
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~~-~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~~-~ 422 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGER-ILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVPT-P 422 (435)
T ss_pred EEEcCCCceEEEEEECCCCceE-ecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEccC-C
Confidence 87653 36888998665432 332 22356788999999988776542 36667775432 223322 2
Q ss_pred CceEEEEEeC
Q 008393 499 NKFHSCVFHP 508 (567)
Q Consensus 499 ~~i~~~~~sp 508 (567)
..+...+|+|
T Consensus 423 ~~~~~p~Wsp 432 (435)
T PRK05137 423 GDASDPAWSP 432 (435)
T ss_pred CCccCcccCC
Confidence 3345556665
No 236
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2.5e-12 Score=127.58 Aligned_cols=267 Identities=14% Similarity=0.179 Sum_probs=181.7
Q ss_pred CeEEEEEcCCCCeEEEEeC-----------CCcEEEEeCCCCeeeeeeccc--CccEE-EEEECCCCCeEEEEeCCCcEE
Q 008393 289 KVICCHFSSDGKLLATGGH-----------DKKAVLWHTDTLKSKTNLEEH--SSLIT-DVRFSPSMPRLATSSFDKTVR 354 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~-----------dg~I~vwd~~~~~~~~~l~~h--~~~V~-~i~fsp~~~~l~s~s~dg~I~ 354 (567)
.|.-+.|||..+||+|-+. ...++|||+.+|...+.+... ...++ -..||.|++|+|.-..++ |.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-is 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-IS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccce-EE
Confidence 4668999999999998652 257999999999999888752 22233 358999999999887765 99
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC----CCcEEEEECCCCeeeEEEe---CCeeEEEEecCCCEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG----DGEIRYWSINNGSCTRVFK---GGTAQMRFQPHLGRY 427 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~----dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~l 427 (567)
||+..+ -.++..-.-.-..|....|+|.+.-|.+-.-. -..+.+..+.++..+++-. -....+.|...|.+|
T Consensus 330 IyEtps-f~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCc-eeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEE
Confidence 999875 33222222234568888999986544332221 2356777777777666533 334556788887777
Q ss_pred EEEEC-------C---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCC-CCCCCceEE
Q 008393 428 LAAAA-------E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVG-SGSEGECVH 492 (567)
Q Consensus 428 ~~~~~-------d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~-~~~~~~~i~ 492 (567)
++-.. . ..+.|+.++....-...-.-...|...+|-|.|+.+++-+.. ++.+|.++ +......+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 66443 1 245566665543322222345778899999999877766543 69999998 344444555
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEE---cCCeEEEEECCC--CcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIG---CYQSLELWNMSE--NKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~---~dg~I~iwd~~~--~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.+.. ...+.+.|+|.|.++++++ ..|.+.+||+.- .+.+....|. ..+.+.|.|.|+|+++++.-
T Consensus 489 ~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 489 ELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred hhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeeh
Confidence 5543 5567889999999988875 457999999984 3333444454 46788999999999998853
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=3.6e-12 Score=133.24 Aligned_cols=231 Identities=19% Similarity=0.204 Sum_probs=159.5
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
...|.++|.+... ...+..+...+...+|+|+|++|+.+..+ ..|++||+.++.. ..+..+...+.+++|+|++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCC
Confidence 3468888875433 45555677778999999999999887654 4799999987322 3334455667789999999
Q ss_pred CeEEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.++ .|++||+.++........ ......|++++..++..+.. ..|+++|+.+++.. .+..+...+
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~ 324 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN 324 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence 98887776554 589999988765443322 23456899999988877653 26888898877644 344345667
Q ss_pred eEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCC
Q 008393 458 DSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSEN 530 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~ 530 (567)
..+.|+|+|++|+.++.+ .|.+||+.++. ...+.. ........|+|++++|+....++ .+++++....
T Consensus 325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~----~~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG----ERVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred cCeEECCCCCEEEEEEccCCceEEEEEeCCCCC----eEEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 788999999998887754 58889987642 122221 12234558999999998887764 5777776655
Q ss_pred cEEEeccccCCeeEEEE
Q 008393 531 KTMTLTAHEGLIAALAV 547 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~~ 547 (567)
....+..+.+.+..++|
T Consensus 400 ~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 400 FRARLPLGNGDVREPAW 416 (417)
T ss_pred eeeECCCCCCCcCCCCC
Confidence 55455544555655555
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=1.6e-14 Score=140.14 Aligned_cols=228 Identities=15% Similarity=0.186 Sum_probs=182.9
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
...-..+.|+.+|++|+.|+..|.|..+|+.+ +.....+. -...|.++.|..+. .+|+ ......++|||-. |..+
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t-~~L~~Ei~-v~Etv~Dv~~LHne-q~~A-VAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT-KKLHFEIN-VMETVRDVTFLHNE-QFFA-VAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeeccc-ceeeeeee-hhhhhhhhhhhcch-HHHH-hhhhceEEEecCC-CcEE
Confidence 34456789999999999999999999999998 55444443 45678999998774 4553 4457899999965 4555
Q ss_pred EEEe--CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 409 RVFK--GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 409 ~~~~--~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
+.++ ..+..+.|-|..-.|++++..|.+..-|+.+|+.+..+....+.+..++-+|-+..+-+|..+ +|.+|...+.
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 5554 356778899997778888889999999999999999998888999999999988888888888 9999998665
Q ss_pred CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 486 SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 486 ~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
+.+..+.+|.++|.++++.++|.|+++.|.|..|+|||++....+ ++.. .-+...++||..| +|| ++....|.
T Consensus 284 ---ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~ 357 (545)
T KOG1272|consen 284 ---EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQ 357 (545)
T ss_pred ---chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeee
Confidence 667778889999999999999999999999999999999987644 3333 4567788888666 333 44445788
Q ss_pred EcC
Q 008393 565 LWK 567 (567)
Q Consensus 565 iWd 567 (567)
||.
T Consensus 358 iw~ 360 (545)
T KOG1272|consen 358 IWK 360 (545)
T ss_pred eeh
Confidence 884
No 239
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=8.1e-14 Score=136.06 Aligned_cols=250 Identities=20% Similarity=0.285 Sum_probs=189.6
Q ss_pred CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCC-CCeEEEEEeCCCc
Q 008393 318 TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPN-KDDLICSCDGDGE 396 (567)
Q Consensus 318 ~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~-~~~li~s~~~dg~ 396 (567)
.......|..|.+.|..|.|+..|..|++|+.|..|.+||+......+....+|...|..-.|.|. +..-+++++.||.
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc
Confidence 345566788999999999999999999999999999999999866677777899999988888775 3345669999999
Q ss_pred EEEEECCCCee------eEEEeCCeeEEEEecCCC-EEEEEECCCeEEEEECCCCeEEEEe---cCCCC---CeeEEEEc
Q 008393 397 IRYWSINNGSC------TRVFKGGTAQMRFQPHLG-RYLAAAAENVVSILDAETQACRLSL---QGHTK---PIDSVCWD 463 (567)
Q Consensus 397 I~iwd~~~~~~------~~~~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~~~~~---~~h~~---~V~~l~~s 463 (567)
|++=.+..... +....+++..++..|+.. .|++++.|+.+.-+|++.......+ ..+.. ....|+..
T Consensus 211 vr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~ 290 (559)
T KOG1334|consen 211 VRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD 290 (559)
T ss_pred eeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence 99988764332 334567788888888765 4777888999999999987543333 22333 56788999
Q ss_pred CCCC-EEEEEeCC-eEEEEeCCCCCCCc---eEEE------eecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-
Q 008393 464 PSGE-LLASVSED-SVRVWTVGSGSEGE---CVHE------LSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK- 531 (567)
Q Consensus 464 p~g~-~l~s~s~d-~I~iwd~~~~~~~~---~i~~------~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~- 531 (567)
|... .+++++.| .+++||.+.-.... .+.. .......|++++|+.++.-|++...|-.|++|.-.-+.
T Consensus 291 P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 291 PRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred CCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 9554 88899999 99999987542211 1111 11234559999999999999999999999999543221
Q ss_pred -----------EE--EeccccC--CeeEEEE-ecCCCEEEEEECCCcEEEcC
Q 008393 532 -----------TM--TLTAHEG--LIAALAV-STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 -----------~~--~~~~h~~--~V~~l~~-spdg~~l~s~s~Dg~I~iWd 567 (567)
.+ .+.+|.. .|..+.| -|...|+++|++-|.|.||+
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 11 3567765 4667765 68889999999999999996
No 240
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.9e-12 Score=131.08 Aligned_cols=232 Identities=15% Similarity=0.087 Sum_probs=160.6
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.|.++|.+.++ ...+..+...+....|+|||+.|+..+.+ ..|.+||+.++ .. ..+....+.+....|+|+|+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~~-~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-RR-EQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-CE-EEccCCCCCcCCeEECCCCCE
Confidence 47777876544 45555677789999999999998877644 36899999873 32 333334445667899999998
Q ss_pred EEEEEeCCC--cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 387 LICSCDGDG--EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 387 li~s~~~dg--~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
++++...++ .|++||+.+++....... ......|+|++..++..+.. ..|+++|+.+++...... .......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence 887776665 688889998875543322 34457899999988877652 368888988876543222 2233445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~ 532 (567)
..|+|+|++|+..+.+ .|.+||+.++.. ..+ .. ........|+|+|+.|+..+.+ ..|+++++.....
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~l---t~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RIL---TD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEc---cC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999999887643 588999987632 222 21 1122245899999999887765 3688889876666
Q ss_pred EEeccccCCeeEEEEecC
Q 008393 533 MTLTAHEGLIAALAVSTE 550 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spd 550 (567)
..+..+.+.+...+|+|-
T Consensus 411 ~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 411 LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred EECcCCCCCcCCCccCCC
Confidence 566666677888888763
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.3e-12 Score=130.15 Aligned_cols=237 Identities=17% Similarity=0.218 Sum_probs=172.8
Q ss_pred ccCccEEEEEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEE-EcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 327 EHSSLITDVRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLD-FHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 327 ~h~~~V~~i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~-~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
++....+.|..+|||.|+ ++|...-.|++||+.+- .+..-......|..+. ++.|-...+ .--.|.+|-+...-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanL--SLKFERhlDae~V~feiLsDD~SK~v-~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANL--SLKFERHLDAEVVDFEILSDDYSKSV-FLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccc--eeeeeecccccceeEEEeccchhhhe-EeecCceeeehhhcC
Confidence 477788999999999975 67778889999999862 2222222233343333 333323333 334577777665443
Q ss_pred CeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCC
Q 008393 405 GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVG 483 (567)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~ 483 (567)
......++.....++++.-...+++++....|+-++++.|..+..|....+.+++|..++...+|++|+.+ .|..||.+
T Consensus 126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence 33333444455667777767778889999999999999999999998888999999999999999999988 99999998
Q ss_pred CCCCCceEEE---eecCC-----CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccC--CeeEEEEecC--C
Q 008393 484 SGSEGECVHE---LSCNG-----NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEG--LIAALAVSTE--T 551 (567)
Q Consensus 484 ~~~~~~~i~~---~~~~~-----~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~--~V~~l~~spd--g 551 (567)
+......+.. +..+. ..|+++.|+.+|-.+++|..+|.|+|||++..+.+....|.. +|..+.|-+. .
T Consensus 206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q 285 (703)
T KOG2321|consen 206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ 285 (703)
T ss_pred hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence 7643322221 11122 238999999999999999999999999999999987777765 6888888665 3
Q ss_pred CEEEEEECCCcEEEcC
Q 008393 552 GYVASASHDKFVKLWK 567 (567)
Q Consensus 552 ~~l~s~s~Dg~I~iWd 567 (567)
..|+|. +...++|||
T Consensus 286 ~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 286 NKVVSM-DKRILKIWD 300 (703)
T ss_pred ceEEec-chHHhhhcc
Confidence 556655 456899996
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9.9e-12 Score=130.15 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=156.0
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC-C--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD-K--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD 386 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d-g--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~ 386 (567)
.|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ + .|++||+.++ .. ..+....+......|+|+|+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 677778755443 4555667789999999999988876543 3 5888898863 32 222222334457899999999
Q ss_pred EEEEEeCCCc--EEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC-C--CeEEEEECCCCeEEEEecCCCCCeeE
Q 008393 387 LICSCDGDGE--IRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA-E--NVVSILDAETQACRLSLQGHTKPIDS 459 (567)
Q Consensus 387 li~s~~~dg~--I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V~~ 459 (567)
++++.+.++. |++||+.+++....... ......|+|++..++..+. + ..|+++|+.+++..... ........
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence 9888777775 88889888765543332 3456789999998887765 2 36888888887654322 12223445
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcE
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKT 532 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~ 532 (567)
.+|+|||++|+..+.+ .|.++|+.++.. .. +... .......|+|+|+.|+....++ .|++++......
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~---lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~ 429 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QV---LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK 429 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCe-EE---ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 7899999998887653 466678766532 11 2211 1122348999999888776543 588889866655
Q ss_pred EEeccccCCeeEEEEec
Q 008393 533 MTLTAHEGLIAALAVST 549 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~sp 549 (567)
..+..+.+.+...+|+|
T Consensus 430 ~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 430 ARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EECcCCCCCcCCCccCC
Confidence 56666667788888887
No 243
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=5.2e-13 Score=131.93 Aligned_cols=189 Identities=16% Similarity=0.255 Sum_probs=136.2
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeec----ccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccC
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLE----EHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGH 371 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~----~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h 371 (567)
+++--|+.|-..|.|.+.|....+..+.+. .....|+||.|-|.+. .++.+-.+|.+++||.+..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---------- 252 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---------- 252 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc----------
Confidence 455567778888999988876533222222 2346799999999654 6677778999999987421
Q ss_pred CCcEEEEE--EcCCCCeEEE-EE---eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe
Q 008393 372 SASVMSLD--FHPNKDDLIC-SC---DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA 445 (567)
Q Consensus 372 ~~~V~~l~--~~p~~~~li~-s~---~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~ 445 (567)
...+... ..+++..+-+ ++ ..++-+.-|-+ -++.+..++|+|++.++++.+.||.++|||..+.+
T Consensus 253 -~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~--------~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e 323 (636)
T KOG2394|consen 253 -CGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHI--------GEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE 323 (636)
T ss_pred -ccCCCCcccccCCCCeeEEeeeeccccCCccceeEe--------ccccccceeEcCCCceEEEEecCceEEEeeccHHH
Confidence 1111111 1222222211 11 01122333322 23467889999999999999999999999999998
Q ss_pred EEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEe
Q 008393 446 CRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~s 507 (567)
.+..++.--+...|++|+|||+||++|++| -|.||.+... +.+..-.+|..+|..++|.
T Consensus 324 Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er---RVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 324 LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER---RVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc---eEEEeccccccceeeEeec
Confidence 887777777889999999999999999999 9999999654 8889999999999999998
No 244
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=5.9e-12 Score=118.95 Aligned_cols=227 Identities=17% Similarity=0.248 Sum_probs=142.8
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
....+| .+|+++.|.+||..|++++. |..|.|||.+++..+....-..+.++-+.|+||+.+|+.+..|+..++|...
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 344566 79999999999999999875 6789999999988776665566779999999999999999999999999765
Q ss_pred CCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEE-EEECCCeEEE
Q 008393 360 NPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYL-AAAAENVVSI 438 (567)
Q Consensus 360 ~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~I~i 438 (567)
......+... ..+.|...+|+|.|..++++++..-.|+-....... ..+. .++......+
T Consensus 269 q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~------------------~~~~~~~~~k~~lli 329 (445)
T KOG2139|consen 269 QSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGED------------------SVFLRPQSIKRVLLI 329 (445)
T ss_pred ccceecceec-cCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCC------------------ccccCcccceeeeee
Confidence 5333333333 345999999999999999988765444333222111 1111 1111222223
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e--------EEEEeCCCCCCCceEEEeecCCCceEEEEEeC-
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S--------VRVWTVGSGSEGECVHELSCNGNKFHSCVFHP- 508 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~--------I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp- 508 (567)
-|+..-....--.--.+++.+++|+|.|++||+.-.+ . |.+||.+..........-...+.....+.|+|
T Consensus 330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl 409 (445)
T KOG2139|consen 330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL 409 (445)
T ss_pred ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence 3332111000000123678899999999999988755 2 55677654322121111111122234445555
Q ss_pred --CCCeEEEEEcCCeEEEEEC
Q 008393 509 --TYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 509 --~~~~l~~~~~dg~I~iwd~ 527 (567)
++..|.++=..|.|.-|++
T Consensus 410 ~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 410 KNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred ccCCcEEEEEeccCceEeeee
Confidence 4455555556666666654
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.49 E-value=2.8e-12 Score=118.17 Aligned_cols=108 Identities=23% Similarity=0.477 Sum_probs=86.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEe--CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEE
Q 008393 453 HTKPIDSVCWDPSGELLASVS--ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWN 526 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s--~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd 526 (567)
..++|.+++|+|+|+.|++.. .+ .|.+||++ .+.+..+. ...+..+.|+|+|++|++++.+ |.|.+||
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~----~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd 131 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK----GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD 131 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc----ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence 345799999999999876653 44 89999996 24555553 5677889999999999998754 5799999
Q ss_pred CCCCcEEEeccccCCeeEEEEecCCCEEEEEEC------CCcEEEcC
Q 008393 527 MSENKTMTLTAHEGLIAALAVSTETGYVASASH------DKFVKLWK 567 (567)
Q Consensus 527 ~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iWd 567 (567)
+++.+.+....|.. ++.++|+|||++|+++.. |+.++||+
T Consensus 132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 99888876666654 789999999999999874 78888885
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=138.38 Aligned_cols=265 Identities=16% Similarity=0.213 Sum_probs=185.0
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec------ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE------EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~------~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
-+++.+..+-. +||+.| ..-.|.+||+..+..+..+. .|... .. ..-.+.+++++..-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag-~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e--~~-~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAG-SGPEILVYDLSSGCLIRHLIQSKILEVHRGE--GK-VKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeec-CCCceEEeeCCchhHhhhhhhhccccccccc--cc-ceeccceEEEEEeecceeecchhh
Confidence 44555555554 466655 46689999998877665443 33000 00 001233555555444344333322
Q ss_pred CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE-------EEEecCCCEEEEEECC
Q 008393 361 PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ-------MRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~d 433 (567)
.....+. ..|....+.-+. ..++....++.+.+||...+.....+.....+ +-++++.-++++++.-
T Consensus 81 --~~~~~~s---~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~ 154 (967)
T KOG0974|consen 81 --QIIERFS---DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF 154 (967)
T ss_pred --hhhhhcc---ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc
Confidence 1122222 223333333333 34556677889999999988777665543322 2245555567777789
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCe
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
+.|.+|+......-..+.+|++.|.++.|+.||.++++.++| .+++|++.+.+... ...-+|...+..|+|.|+ +
T Consensus 155 ~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--~ 230 (967)
T KOG0974|consen 155 GEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--R 230 (967)
T ss_pred ccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--e
Confidence 999999987544444789999999999999999999999999 99999998875433 456678999999999999 8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEeccccC-CeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMTLTAHEG-LIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~~~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.|-+.++|+........+..|.+ .|..++..++...++|++.||.+++|+
T Consensus 231 i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 231 IITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred eEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 9999999999999877666657777764 699999999999999999999999996
No 247
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.5e-10 Score=108.89 Aligned_cols=286 Identities=15% Similarity=0.135 Sum_probs=193.5
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC---CCcEEEEeCCC--Ceeeee--ecccCccEEEE
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH---DKKAVLWHTDT--LKSKTN--LEEHSSLITDV 335 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~---dg~I~vwd~~~--~~~~~~--l~~h~~~V~~i 335 (567)
...+.+|++.+...-.....+-.+.+.++-++|++++++|.++.. +|.|..|.++. |++... .......-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 345666666532111122223356778889999999999988764 47888887764 444322 22223334889
Q ss_pred EECCCCCeEEEEeC-CCcEEEEEcCCCCceeE--EeccCCCc----------EEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 336 RFSPSMPRLATSSF-DKTVRVWDADNPGYSLR--TFMGHSAS----------VMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 336 ~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~--~~~~h~~~----------V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
++++++++|+++.. -|.|.++-+...+.... ....|.+. +.+..|.|+++++++..-.--.|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999999998876 57899999976554322 22335555 8899999999877755545568999999
Q ss_pred CCCeeeEEE----e--CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCC-eEEEEecC---------CCCCeeEEEEcCC
Q 008393 403 NNGSCTRVF----K--GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQ-ACRLSLQG---------HTKPIDSVCWDPS 465 (567)
Q Consensus 403 ~~~~~~~~~----~--~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~-~~~~~~~~---------h~~~V~~l~~sp~ 465 (567)
..++....- + .+...+.|+|++...++.++ +++|.+|..... ..+..+.. .......|.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 987754332 2 35678999999998888877 899999988763 22222211 2345678999999
Q ss_pred CCEEEEEeCC--eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECC--CCcEEEec--c
Q 008393 466 GELLASVSED--SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMS--ENKTMTLT--A 537 (567)
Q Consensus 466 g~~l~s~s~d--~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~--~~~~~~~~--~ 537 (567)
|++|+++..+ .|.+|.+.... ....+.....++.....+.|++.+++|+++..++ .|.+|... +|+...+. .
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~ 334 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYA 334 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEeccccc
Confidence 9999999876 78888886542 2344444455555578889999999999998875 67777654 55544222 2
Q ss_pred ccCCeeEEEEe
Q 008393 538 HEGLIAALAVS 548 (567)
Q Consensus 538 h~~~V~~l~~s 548 (567)
......||.|.
T Consensus 335 ~~p~Pvcv~f~ 345 (346)
T COG2706 335 VVPEPVCVKFL 345 (346)
T ss_pred CCCCcEEEEEc
Confidence 33445566553
No 248
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.49 E-value=1.8e-10 Score=114.22 Aligned_cols=256 Identities=10% Similarity=0.080 Sum_probs=167.7
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC----------CCcEEEEEcCCCCceeEEeccC-------
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMGH------- 371 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~h------- 371 (567)
+.|.|.|..+++.+.++..-..+- .+ ++||++.|+++.. +..|.+||..+ .+.+..+.-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-HLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-CcEEeEEccCCCchhhc
Confidence 899999999999998887543332 24 9999998877765 78899999998 5555555421
Q ss_pred CCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCC-CeE-EE
Q 008393 372 SASVMSLDFHPNKDDLICSCDG-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAET-QAC-RL 448 (567)
Q Consensus 372 ~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~-~~~-~~ 448 (567)
......++++|+|+.++++--. +..|.++|+.+++.+..+.-+.....+-.....+.+.+.|+.....-+.+ ++. ..
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence 2233478999999988866544 89999999999999988875443333332223333444555444433222 221 11
Q ss_pred E---ecCCCCCeeE-EEEcC-CCCEEEEEeCCeEEEEeCCCCCC--CceEEEeec-------CCCceEEEEEeCCCCeEE
Q 008393 449 S---LQGHTKPIDS-VCWDP-SGELLASVSEDSVRVWTVGSGSE--GECVHELSC-------NGNKFHSCVFHPTYPSLL 514 (567)
Q Consensus 449 ~---~~~h~~~V~~-l~~sp-~g~~l~s~s~d~I~iwd~~~~~~--~~~i~~~~~-------~~~~i~~~~~sp~~~~l~ 514 (567)
. +.+...++.. -.|.+ +|++++...++.|.+.|+..... ...+..+.. ....+.-+++++++++++
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 1 1110111100 13455 88888888888999999754321 112222211 122344489999999999
Q ss_pred EEE----------cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 515 VIG----------CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 515 ~~~----------~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
+.. ..+.|.++|..+++.+....-...+..++++||++ +|++.. .++.|.+.|
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 853 12489999999999886555566899999999999 777666 567788765
No 249
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=5.8e-11 Score=123.41 Aligned_cols=236 Identities=16% Similarity=0.155 Sum_probs=156.6
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeE---EEEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRL---ATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPN 383 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l---~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~ 383 (567)
..|.+.|.+.+.. ..+......+..-+|+|||+.+ ++...+| .|.+.++.++. ...+....+......|+||
T Consensus 165 ~~l~~~d~dG~~~-~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~--~~~lt~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNL-RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPA--GKKILALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCc-eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCC--ceEeecCCCCccceEECCC
Confidence 4677777765544 3455455667888999999752 3444444 47777887632 2333334555667899999
Q ss_pred CCeEEEEEeCCC----cEEEEECCCC---eeeEEEeC---CeeEEEEecCCCEEEEEEC-CC--eEEEEECCC-CeEEEE
Q 008393 384 KDDLICSCDGDG----EIRYWSINNG---SCTRVFKG---GTAQMRFQPHLGRYLAAAA-EN--VVSILDAET-QACRLS 449 (567)
Q Consensus 384 ~~~li~s~~~dg----~I~iwd~~~~---~~~~~~~~---~~~~~~~~~~~~~l~~~~~-dg--~I~i~d~~~-~~~~~~ 449 (567)
|+.++++...+| .+.+|++..+ ........ ......|+|++..++..+. ++ .|+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 999988775433 3444777653 33333322 2356789999998887764 45 455556543 233444
Q ss_pred ecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeE
Q 008393 450 LQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSL 522 (567)
Q Consensus 450 ~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I 522 (567)
+..+...+....|+|||+.|+..+.+ .|.+||+.+++. ..+......+....|+|||+.|+....+ ..|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~----~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L 397 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD----YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL 397 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe----EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence 55455667789999999988877642 699999987632 2222223456678999999988876543 479
Q ss_pred EEEECCCCcEEEeccccCCeeEEEEecCC
Q 008393 523 ELWNMSENKTMTLTAHEGLIAALAVSTET 551 (567)
Q Consensus 523 ~iwd~~~~~~~~~~~h~~~V~~l~~spdg 551 (567)
+++|+.+++...+....+.+...+|+|-.
T Consensus 398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 398 YLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EEEECCCCCEEEeecCCCcccCceecCCC
Confidence 99999988877666666777888898753
No 250
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.44 E-value=1e-11 Score=114.45 Aligned_cols=148 Identities=13% Similarity=0.281 Sum_probs=110.8
Q ss_pred EEEEECCCCCeEEEEeC----------CCcEEEEEcCCCCceeEEecc-CCCcEEEEEEcCCCCeEEEE-EeCCCcEEEE
Q 008393 333 TDVRFSPSMPRLATSSF----------DKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICS-CDGDGEIRYW 400 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~li~s-~~~dg~I~iw 400 (567)
..+.|+++|.+|++-.. -+...||.++.....+..+.- ..+.|.+++|+|+++.+++. |..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765433 134566666543444444432 34579999999999887644 4567899999
Q ss_pred ECCCCeeeEEEe-CCeeEEEEecCCCEEEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC--
Q 008393 401 SINNGSCTRVFK-GGTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE-- 474 (567)
Q Consensus 401 d~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-- 474 (567)
|++ ++.+..+. .....+.|+|+|..+++++. .|.|.+||.++.+.+..+. | ..++.++|+|||++|+++..
T Consensus 89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence 997 55555554 45778999999999999875 4679999999998887765 3 34789999999999999873
Q ss_pred ----C-eEEEEeCC
Q 008393 475 ----D-SVRVWTVG 483 (567)
Q Consensus 475 ----d-~I~iwd~~ 483 (567)
| .++||++.
T Consensus 166 r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ 179 (194)
T ss_pred ceeccccEEEEEec
Confidence 5 78999984
No 251
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=7.6e-11 Score=123.50 Aligned_cols=219 Identities=19% Similarity=0.248 Sum_probs=145.5
Q ss_pred eeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCc--EE
Q 008393 281 NSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKT--VR 354 (567)
Q Consensus 281 ~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~--I~ 354 (567)
+.+..+...+.+..|+|||+.|+..+.+ ..|++||+.+++... +...........|+|||+.|+. .+.+|. |+
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy 289 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIY 289 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEE
Confidence 3455567788899999999999876543 358899998876532 2222333457899999998765 456665 77
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEE-eCC-eeEEEEecCCCEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVF-KGG-TAQMRFQPHLGRYLAA 430 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~-~~~-~~~~~~~~~~~~l~~~ 430 (567)
+||+++ +. ...+..+...+...+|+|+++.++++...++ .|+++|+.+++..... .+. .....|+|++..++..
T Consensus 290 ~~dl~t-g~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 290 VVDIAT-KA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEECCC-CC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEE
Confidence 778876 32 3455556666778999999998887776554 4677788777655432 222 2346899999998887
Q ss_pred ECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 431 AAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 431 ~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
..+ + .|.++|+.+++... +... .......|+|||++|+..+.+ .+++++.. + .....+......+..
T Consensus 368 ~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G---~~~~~l~~~~g~~~~ 441 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-G---RFKARLPAGQGEVKS 441 (448)
T ss_pred EecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-C---CceEECcCCCCCcCC
Confidence 663 3 56778988876543 2222 122345899999988776643 36777763 3 233444444455666
Q ss_pred EEEeC
Q 008393 504 CVFHP 508 (567)
Q Consensus 504 ~~~sp 508 (567)
.+|+|
T Consensus 442 p~Wsp 446 (448)
T PRK04792 442 PAWSP 446 (448)
T ss_pred CccCC
Confidence 67776
No 252
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.4e-10 Score=120.48 Aligned_cols=211 Identities=12% Similarity=0.116 Sum_probs=138.7
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe--EEEEEeCCC--cEEEEECCCCeee--EEEeCCeeEEEEecCCC
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD--LICSCDGDG--EIRYWSINNGSCT--RVFKGGTAQMRFQPHLG 425 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~--li~s~~~dg--~I~iwd~~~~~~~--~~~~~~~~~~~~~~~~~ 425 (567)
.|.+.|.+. ...+.+......+.+-.|+|||+. ++++...++ .|++.++.+++.. ..+.+......|+|++.
T Consensus 166 ~l~~~d~dG--~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~ 243 (428)
T PRK01029 166 ELWSVDYDG--QNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKK 243 (428)
T ss_pred eEEEEcCCC--CCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCC
Confidence 566667664 333455556667788899999976 333554443 5888899877644 33556667789999999
Q ss_pred EEEEEEC-CC----eEEEEECCCC---eEEEEecCCCCCeeEEEEcCCCCEEEEEeC-C---eEEEEeCCCCCCCceEEE
Q 008393 426 RYLAAAA-EN----VVSILDAETQ---ACRLSLQGHTKPIDSVCWDPSGELLASVSE-D---SVRVWTVGSGSEGECVHE 493 (567)
Q Consensus 426 ~l~~~~~-dg----~I~i~d~~~~---~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~-d---~I~iwd~~~~~~~~~i~~ 493 (567)
.++.... +| .+.+|++..+ +.......+.......+|+|||+.|+..+. + .|+++++.... .....
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~ 321 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRL 321 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEE
Confidence 9887764 22 3444676652 333333333344567899999998887764 2 35555553211 12333
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC-C--CcEEEc
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH-D--KFVKLW 566 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~-D--g~I~iW 566 (567)
+......+....|+|||++|+..+.+ ..|++||+.+++...+......+....|+|||++|+.... + ..|++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v 400 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI 400 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence 43444566778999999999887654 3799999999988766655556788999999998875443 2 345554
No 253
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=9.8e-11 Score=122.82 Aligned_cols=220 Identities=19% Similarity=0.210 Sum_probs=148.6
Q ss_pred eeeeccCCCCeEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCC--cE
Q 008393 280 ANSVRASTSKVICCHFSSDGKLLATGGHD---KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDK--TV 353 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~~lasg~~d---g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg--~I 353 (567)
.+.+..+...+...+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+.|+. ...+| .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 34555677889999999999999876644 369999998876543 3333344567899999998874 44455 58
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC--cEEEEECCCCeeeEEEe-C-CeeEEEEecCCCEEEE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG--EIRYWSINNGSCTRVFK-G-GTAQMRFQPHLGRYLA 429 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg--~I~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~ 429 (567)
++||+++ +. ...+..+........|+|+++.++++...++ .|+++|+.+++..+... + ......|+|+++.++.
T Consensus 270 y~~d~~~-~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 270 YVMDLAS-RQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred EEEECCC-CC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEE
Confidence 8889886 33 3445556666777899999998887765554 57778888877544332 2 2345689999999888
Q ss_pred EECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceE
Q 008393 430 AAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFH 502 (567)
Q Consensus 430 ~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~ 502 (567)
...+ + .|.++|+.+++....... .......|+|||++|+..+.+ .|.++++... ....+......+.
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~ 421 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVR 421 (430)
T ss_pred EEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcC
Confidence 7753 2 588999988765432222 223356899999988877643 4777777432 2223333344455
Q ss_pred EEEEeC
Q 008393 503 SCVFHP 508 (567)
Q Consensus 503 ~~~~sp 508 (567)
..+|+|
T Consensus 422 ~p~ws~ 427 (430)
T PRK00178 422 EPSWSP 427 (430)
T ss_pred CCccCC
Confidence 556665
No 254
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.40 E-value=1.5e-10 Score=120.96 Aligned_cols=202 Identities=16% Similarity=0.238 Sum_probs=144.9
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--CcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD--GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRY 427 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--g~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l 427 (567)
.|.++|.+. ...+.+..+...+...+|+|+|+.++++...+ ..|++||+.+++.... +.+....++|+|++..+
T Consensus 171 ~l~~~d~~g--~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 171 ELQVADYDG--ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred eEEEEcCCC--CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 577778764 33455556777899999999999888665433 5799999998865433 33445678899999888
Q ss_pred EEEEC-C--CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 428 LAAAA-E--NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 428 ~~~~~-d--g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
++... + ..|++||+.++... .+..+........|+|||+.|+..+.. .|++||+.++. ...+..+...
T Consensus 249 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~~ 323 (417)
T TIGR02800 249 AVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGGY 323 (417)
T ss_pred EEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCC
Confidence 76544 3 36999999887544 344454555678999999988876643 58888886542 2334444556
Q ss_pred eEEEEEeCCCCeEEEEEcCC---eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCC
Q 008393 501 FHSCVFHPTYPSLLVIGCYQ---SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg---~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....|+|++++|+.+..++ .|++||+.++....+... .......|+||+++|+.++.++
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 67789999999999988776 899999988766544432 2345678999999988877654
No 255
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.40 E-value=5.2e-09 Score=103.90 Aligned_cols=257 Identities=12% Similarity=0.120 Sum_probs=156.9
Q ss_pred CCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC----------CCcEEEEeCCCCeeeeeecccC----
Q 008393 264 AGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH----------DKKAVLWHTDTLKSKTNLEEHS---- 329 (567)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~----------dg~I~vwd~~~~~~~~~l~~h~---- 329 (567)
..+.+.|..+. +.+..+..-..+-. + ++|||+.|+++.. +..|.+||..+++.+..+..-.
T Consensus 27 ~~v~ViD~~~~---~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAG---RVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCC---EEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 34455555554 33444443223322 4 9999998887765 7899999999999998887422
Q ss_pred ---ccEEEEEECCCCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 330 ---SLITDVRFSPSMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 330 ---~~V~~i~fsp~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..-..++++|||++|++... +..|.+.|+.+ ++.+..+.-. +...-+..... ..++ - +.||......+.+
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~-~kvv~ei~vp-~~~~vy~t~e~-~~~~-~-~~Dg~~~~v~~d~ 176 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG-KAFVRMMDVP-DCYHIFPTAND-TFFM-H-CRDGSLAKVGYGT 176 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCC-CcEEEEEeCC-CCcEEEEecCC-ccEE-E-eecCceEEEEecC
Confidence 23447899999999998763 68899999998 5555554421 11111222211 1111 1 1244433333222
Q ss_pred -Cee-e---EEEeCCe----eEEEEecCCCEEEEEECCCeEEEEECCC-----CeEEEEecC-------CCCCeeEEEEc
Q 008393 405 -GSC-T---RVFKGGT----AQMRFQPHLGRYLAAAAENVVSILDAET-----QACRLSLQG-------HTKPIDSVCWD 463 (567)
Q Consensus 405 -~~~-~---~~~~~~~----~~~~~~~~~~~l~~~~~dg~I~i~d~~~-----~~~~~~~~~-------h~~~V~~l~~s 463 (567)
++. . ..|.... ..-.|.+.++..+..+.+|.|++.|+.. .+....+.. ..+.+.-++++
T Consensus 177 ~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~ 256 (352)
T TIGR02658 177 KGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYH 256 (352)
T ss_pred CCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEc
Confidence 110 1 1111100 0014456334444445559999999544 333332221 22334459999
Q ss_pred CCCCEEEEEe----------C-CeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEE-cCCeEEEEECCCC
Q 008393 464 PSGELLASVS----------E-DSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIG-CYQSLELWNMSEN 530 (567)
Q Consensus 464 p~g~~l~s~s----------~-d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~-~dg~I~iwd~~~~ 530 (567)
++++.++... . +.|.++|..++ +.+..+.. +..+..++++||++ +|++.. .++.|.++|..++
T Consensus 257 ~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 257 RARDRIYLLADQRAKWTHKTASRFLFVVDAKTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETG 332 (352)
T ss_pred CCCCEEEEEecCCccccccCCCCEEEEEECCCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCC
Confidence 9999888743 1 27999999776 56666554 56889999999999 777776 4678999999999
Q ss_pred cEEE
Q 008393 531 KTMT 534 (567)
Q Consensus 531 ~~~~ 534 (567)
+.+.
T Consensus 333 k~i~ 336 (352)
T TIGR02658 333 KELS 336 (352)
T ss_pred eEEe
Confidence 8773
No 256
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.1e-10 Score=117.49 Aligned_cols=201 Identities=17% Similarity=0.251 Sum_probs=153.0
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCeeeeeecc---cCccEEEEEE------CC--------------CCCeEEEEeCCCcE
Q 008393 297 SDGKLLATGGHDKKAVLWHTDTLKSKTNLEE---HSSLITDVRF------SP--------------SMPRLATSSFDKTV 353 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~---h~~~V~~i~f------sp--------------~~~~l~s~s~dg~I 353 (567)
|-+.++|....||.+++|+..+++....+.. -++..++..| +| +...|+-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4567999999999999999998887776652 2344555555 22 23367888889999
Q ss_pred EEEEcCCCCceeEEe--ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEEEEecCCCEEE
Q 008393 354 RVWDADNPGYSLRTF--MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQMRFQPHLGRYL 428 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~--~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~l~ 428 (567)
.+|++.. ++....+ .+|.+.|.++.++.+- ..|++++.|+.+..|+...+..++.++. ....++++|+++.++
T Consensus 83 ~~ys~~~-g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 83 LLYSVAG-GEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred EEEEecC-CeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 9999987 4444444 4799999999988764 4677999999999999999999988875 457789999988887
Q ss_pred EEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCC-----CCEEEEEeCC--eEEEEeCCCC-CCCceEEEeecCCCc
Q 008393 429 AAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPS-----GELLASVSED--SVRVWTVGSG-SEGECVHELSCNGNK 500 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~-----g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~~~~~ 500 (567)
+++ +.|++||+++++.+..|.+|.++|.++.|-.+ |++++++... .+.+|-++.. +.....+.+.....+
T Consensus 161 ~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dip 238 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIP 238 (541)
T ss_pred ecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCC
Confidence 766 78999999999999999999999999999876 7777765543 6888877652 222333444444444
Q ss_pred e
Q 008393 501 F 501 (567)
Q Consensus 501 i 501 (567)
+
T Consensus 239 v 239 (541)
T KOG4547|consen 239 V 239 (541)
T ss_pred e
Confidence 3
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.36 E-value=1.2e-09 Score=112.62 Aligned_cols=253 Identities=13% Similarity=0.065 Sum_probs=161.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE--
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV-- 375 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V-- 375 (567)
++..+++++.++.+..+|.++|+.+............... .+..++.++.+|.|+.||.++ ++.+-.+......+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~t-G~~~W~~~~~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV--ANGLVVVRTNDGRLTALDAAT-GERLWTYSRVTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE--ECCEEEEECCCCeEEEEEcCC-CceeeEEccCCCceee
Confidence 4668888889999999999999998776543321111122 245777888899999999987 44443333222111
Q ss_pred ---EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----e------EEE--EecCCCEEEEEECCCeEEEEE
Q 008393 376 ---MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMR--FQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 376 ---~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~------~~~--~~~~~~~l~~~~~dg~I~i~d 440 (567)
.+..+. + . .++.+..++.+..+|.++++.+....... . .+. ....++.+++++.++.++.||
T Consensus 181 ~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 181 RGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALD 257 (377)
T ss_pred cCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEE
Confidence 111222 2 3 45577788999999999998775543110 0 000 111357888888999999999
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEEEc
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
.++++.+...... ....... ++..++.++.+ .|..+|..+++ .+..... .........+ .+.+|++++.
T Consensus 258 ~~tG~~~W~~~~~--~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i--~g~~l~~~~~ 328 (377)
T TIGR03300 258 LRSGRVLWKRDAS--SYQGPAV--DDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAV--VGGYLVVGDF 328 (377)
T ss_pred CCCCcEEEeeccC--CccCceE--eCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEE--ECCEEEEEeC
Confidence 9999888776521 1122222 45567777777 99999998773 3333311 1111222222 4568999999
Q ss_pred CCeEEEEECCCCcEE-EeccccCCe-eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 519 YQSLELWNMSENKTM-TLTAHEGLI-AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 519 dg~I~iwd~~~~~~~-~~~~h~~~V-~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+|.|+++|..+++.+ .+..+...+ .+..+. ++ .|+.++.||.|+.|.
T Consensus 329 ~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~-~l~v~~~dG~l~~~~ 377 (377)
T TIGR03300 329 EGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GD-GLLVQTRDGDLYAFR 377 (377)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CC-EEEEEeCCceEEEeC
Confidence 999999999999887 454444333 333333 33 577889999998763
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.36 E-value=6.2e-11 Score=109.31 Aligned_cols=240 Identities=18% Similarity=0.207 Sum_probs=165.3
Q ss_pred CCCCeEEEEEcC---CCC-eEEEEeCCCcEEEEeCCCCeeeeeecccC------ccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 286 STSKVICCHFSS---DGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHS------SLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 286 h~~~V~~l~~s~---dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~------~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
-+..+..+.|.. +|. .|+-+..+|.|.+|..........|++-. ....++.|++.+..++++..+|.+.+
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~ 147 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISG 147 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEE
Confidence 345556666653 444 55667778999999876544444444321 12457889999999999999999985
Q ss_pred EEcCC-CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEEEeCCeeEEEEecCCCEEEEEECC
Q 008393 356 WDADN-PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRVFKGGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 356 wd~~~-~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~d 433 (567)
-+... .-+.+..++.|...++...|+.....++++|+.|+.+..||++..+ ++..
T Consensus 148 v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------------------- 204 (339)
T KOG0280|consen 148 VYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------------------- 204 (339)
T ss_pred EecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-----------------------
Confidence 55443 1233457889999999999998888899999999999999998322 1110
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
..+-|...|.+|.-+| .+.+|++|+.| .|++||.++.. +.+..-. ..+.|+.+.++|...
T Consensus 205 ---------------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~--kPl~~~~-v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 205 ---------------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG--KPLFKAK-VGGGVWRIKHHPEIF 266 (339)
T ss_pred ---------------cceeeecceEEEecCCCCCceEEEeccccceeeeehhccc--CccccCc-cccceEEEEecchhh
Confidence 1233778888888776 67799999999 99999998543 2333222 247899999999643
Q ss_pred -eEEEEEcCCeEEEEECCCCcEE------EeccccCCeeEEEEecCCCEEEEEE-CCCcEE-Ec
Q 008393 512 -SLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETGYVASAS-HDKFVK-LW 566 (567)
Q Consensus 512 -~l~~~~~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~-iW 566 (567)
.|++++..+..+|.+...+... ....|.+.+..-.|.....+||||+ .|..++ +|
T Consensus 267 ~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 267 HRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred hHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeee
Confidence 4455555566677766554321 4456777777777755556788876 577755 77
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=1.6e-10 Score=117.83 Aligned_cols=273 Identities=18% Similarity=0.261 Sum_probs=196.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---------------eeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---------------KSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---------------~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.....|++|+....++|+||.||.++|..+.+. ..-.++.+|.+.|.-+.|+.+...|-++..+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999999999999999999999987632 12356789999999999999999999999999
Q ss_pred cEEEEEcCCCCceeEEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEeC-CeeEEEEecCCCEEE
Q 008393 352 TVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFKG-GTAQMRFQPHLGRYL 428 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~~-~~~~~~~~~~~~~l~ 428 (567)
.|.||-+-.+..+-..+ ....+.|.+++|..+|..+. ....||.|.+=.++..+.- +.+++ ....+.|+++...++
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIc-IvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKIC-IVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL 172 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEE-EEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence 99999988744433222 23456789999999987654 6778999888777654432 23333 345678999999999
Q ss_pred EEECCCeEEEEECCCC-------eEEEE----ecCCCCCeeEEEEc--------CCCCEEEEEeCC-eEEEEeCCCCCCC
Q 008393 429 AAAAENVVSILDAETQ-------ACRLS----LQGHTKPIDSVCWD--------PSGELLASVSED-SVRVWTVGSGSEG 488 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~~-------~~~~~----~~~h~~~V~~l~~s--------p~g~~l~s~s~d-~I~iwd~~~~~~~ 488 (567)
.+-.+|.+.+||.... .+... +......|-.++|. |+...|+.+..+ .+.|..-.+...+
T Consensus 173 f~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P 252 (1189)
T KOG2041|consen 173 FKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP 252 (1189)
T ss_pred hhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC
Confidence 9999999999997643 12111 11222346667774 467788888877 7776655443332
Q ss_pred ceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---------eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---------SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 489 ~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
..+. .+-.+..+.|+++|..|+++|.+. .|.+|..-....-++......|++++|--.|-.+|.+ .
T Consensus 253 vv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-v 327 (1189)
T KOG2041|consen 253 VVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-V 327 (1189)
T ss_pred eEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-e
Confidence 2222 246788889999999999998752 5777765544444777778889999997777666655 3
Q ss_pred CCcEEE
Q 008393 560 DKFVKL 565 (567)
Q Consensus 560 Dg~I~i 565 (567)
|+.|++
T Consensus 328 dsfiyf 333 (1189)
T KOG2041|consen 328 DSFIYF 333 (1189)
T ss_pred cceEEE
Confidence 566654
No 260
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.31 E-value=1.5e-11 Score=121.76 Aligned_cols=277 Identities=18% Similarity=0.242 Sum_probs=192.1
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecccCccEEEEEECCCCCeEEEEeCCC
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK 351 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg 351 (567)
.+..+.||..+|..++--.+.+-+++++.|++|++|.++ +..+..++..|+.+|.++.|..+.++++++ ||
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345788999999999888888899999999999999986 234677888999999999999988887765 77
Q ss_pred cEEEEEcCCCCceeEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--------CCeeEE
Q 008393 352 TVRVWDADNPGYSLRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--------GGTAQM 418 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--------~~~~~~ 418 (567)
-|.+||.-- +..+... .+..+.|.|+.- -+...+++.|+...+|+++|.+..+....++ +-+.++
T Consensus 805 giHlWDPFi-gr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 805 GIHLWDPFI-GRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred cceeecccc-cchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999764 3322211 122234444432 1234455556889999999999988765553 235778
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEE-EeCCCCCCCceEEEeec
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRV-WTVGSGSEGECVHELSC 496 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~i-wd~~~~~~~~~i~~~~~ 496 (567)
+..+.|++++++-.+|.|.+.|.++|+.+..+...+.....++- |....|+....| .+.+ |..-.+ ......+.
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqlaa-psdq~L~~saldHslaVnWhaldg---imh~q~kp 958 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLAA-PSDQALAQSALDHSLAVNWHALDG---IMHLQDKP 958 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhcC-chhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence 89999999999999999999999999998887765555555543 556677777777 7777 876544 22222222
Q ss_pred CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC-------cEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 497 NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN-------KTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 497 ~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~-------~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
...+.. -.-.-|..|++......+.+|.-... ..+.-....+..++++.-|-..-+..|.+.|.|.+
T Consensus 959 ppepah--flqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 959 PPEPAH--FLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCcchh--hhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence 122211 11223455666666667777743221 12233345677888888887777778888888876
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=9.8e-09 Score=98.17 Aligned_cols=259 Identities=11% Similarity=0.116 Sum_probs=177.1
Q ss_pred CCcEEEEeCCCCeee---eeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeEEe---ccCCCcEEEE
Q 008393 308 DKKAVLWHTDTLKSK---TNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLRTF---MGHSASVMSL 378 (567)
Q Consensus 308 dg~I~vwd~~~~~~~---~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l 378 (567)
+.-|++|++++..-. ..+-.+....+-|+|+|+.++|+++.. +|.|..|.++.....+..+ .....+-+.+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 567999998743221 222356777899999999999988865 4778888887532222222 1122334789
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE---E------------eCCeeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV---F------------KGGTAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~---~------------~~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
++++++..++++...-|.|.++-+.. |..... + ..+.....+.|++.++++... ...|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 99999988887777789999999965 432221 1 123566789999888888776 569999999
Q ss_pred CCCeEEEEec---CCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCC-CCCceEEEeec------CCCceEEEEEeCC
Q 008393 442 ETQACRLSLQ---GHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSG-SEGECVHELSC------NGNKFHSCVFHPT 509 (567)
Q Consensus 442 ~~~~~~~~~~---~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~-~~~~~i~~~~~------~~~~i~~~~~sp~ 509 (567)
..++....-. .....-+.|.|+|++++.++.++= +|.+|..... ...+.+..+.. .......+.+++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 9775432211 233456789999999998888764 8999999763 22233333221 2445677899999
Q ss_pred CCeEEEEEcC-CeEEEEECCC--CcEE---EeccccCCeeEEEEecCCCEEEEEECC-CcEEEc
Q 008393 510 YPSLLVIGCY-QSLELWNMSE--NKTM---TLTAHEGLIAALAVSTETGYVASASHD-KFVKLW 566 (567)
Q Consensus 510 ~~~l~~~~~d-g~I~iwd~~~--~~~~---~~~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW 566 (567)
|++|+++... ..|.+|.+.. ++.. ....+....+.+.|++.+++|+++..| ..|.+|
T Consensus 255 GrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 255 GRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence 9999888653 3788887754 3322 223344458899999999999998865 346655
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.30 E-value=1e-10 Score=117.68 Aligned_cols=202 Identities=16% Similarity=0.214 Sum_probs=145.2
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT 415 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~ 415 (567)
|...++|....||.++|||... +.....|.. -.+..++..|. + +.. +...+.- .-.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~-~~~~~e~~p~~~~s~t~~~~~w~------L-~~~-~s~~k~~------------~~~ 61 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAK-NQLQQEFAPIASLSGTCTYTKWG------L-SAD-YSPMKWL------------SLE 61 (541)
T ss_pred chhheEeecCCCCeEEEEEccC-ceeeeeeccchhccCcceeEEEE------E-Eec-cchHHHH------------hHH
Confidence 3456889999999999999987 333332221 12223333332 1 110 0000000 000
Q ss_pred eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 416 AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
.....+.+...++.|...|.|.+|+...++....+. .|.+.|.++.++.+-..|.+++.| .+..|+.... ..++
T Consensus 62 ~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~---~~~~ 138 (541)
T KOG4547|consen 62 KAKKASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK---VIIR 138 (541)
T ss_pred HHhhccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccc---eeee
Confidence 001122334567777889999999999999888886 489999999999999999999999 9999999665 7788
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecC-----CCEEEE-EECCCcEEE
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTE-----TGYVAS-ASHDKFVKL 565 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spd-----g~~l~s-~s~Dg~I~i 565 (567)
........+.+++++||+..+++++ +.|++||+++++.+ ++.+|.++|+++.|..+ |.++.+ +..+..|.+
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~ 216 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITV 216 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeE
Confidence 8888888999999999999888876 58999999999988 89999999999999877 666554 444555666
Q ss_pred c
Q 008393 566 W 566 (567)
Q Consensus 566 W 566 (567)
|
T Consensus 217 w 217 (541)
T KOG4547|consen 217 W 217 (541)
T ss_pred E
Confidence 6
No 263
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.28 E-value=4e-11 Score=122.68 Aligned_cols=278 Identities=15% Similarity=0.266 Sum_probs=194.3
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeecc-cCccEEEEEECCCC--CeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEE-HSSLITDVRFSPSM--PRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~-h~~~V~~i~fsp~~--~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.+++.++.++|.|+-+|.++.-|.+ +.|++ .+....-+.. ..-.|-.+.|++.. .+-++......-.+|++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 4567789999999999999876644 44554 3444333332 12246677887743 355555555557789986432
Q ss_pred --ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEE---EeCCeeEEEEecCCCEEEEEECCCeE
Q 008393 363 --YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRV---FKGGTAQMRFQPHLGRYLAAAAENVV 436 (567)
Q Consensus 363 --~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~---~~~~~~~~~~~~~~~~l~~~~~dg~I 436 (567)
..-..+.+|...|+.+.|+|....++++|+.|-.|..||+++... +.. .......+.|+.....+++.+..+.|
T Consensus 103 ~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 334566789999999999999999999999999999999998653 332 33567889999999999999999999
Q ss_pred EEEECCCC-eEEEEecCCCCCeeEEEEcCC-CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeE
Q 008393 437 SILDAETQ-ACRLSLQGHTKPIDSVCWDPS-GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSL 513 (567)
Q Consensus 437 ~i~d~~~~-~~~~~~~~h~~~V~~l~~sp~-g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l 513 (567)
.+||++.+ .++..+++|...|+.+.|..- ...+.+++.| +|+.||..... +.-........++..-.+-|-|.-.
T Consensus 183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt--~e~~~~vtt~~piw~~r~~Pfg~g~ 260 (1081)
T KOG0309|consen 183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST--TESKRTVTTNFPIWRGRYLPFGEGY 260 (1081)
T ss_pred EEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc--cccceeccccCcceeccccccCcee
Confidence 99999987 778889999999999998762 2356667777 99999997542 2222223345566666777755433
Q ss_pred EEE--EcCCeEEEE---------ECCCCc--EEEeccccCCeeEEEEecCC----------CEEEEEECCCcEEEcC
Q 008393 514 LVI--GCYQSLELW---------NMSENK--TMTLTAHEGLIAALAVSTET----------GYVASASHDKFVKLWK 567 (567)
Q Consensus 514 ~~~--~~dg~I~iw---------d~~~~~--~~~~~~h~~~V~~l~~spdg----------~~l~s~s~Dg~I~iWd 567 (567)
++- -.+..+.++ +..++. ..++.+|...|..+.|-..+ -.|+|-+.|..+|+|-
T Consensus 261 ~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 261 CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 322 222233333 333332 33888999988877773322 1499999999999993
No 264
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=4.6e-09 Score=105.20 Aligned_cols=270 Identities=12% Similarity=0.193 Sum_probs=174.7
Q ss_pred ccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC--e
Q 008393 266 GRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP--R 343 (567)
Q Consensus 266 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~--~ 343 (567)
..+|+..++.. ...+......-++..|+.|..+.|-- ..+.+.+|+..+.+.+. -+-|...|+.+.++|.+. .
T Consensus 107 ~~v~~vet~~~---~s~~q~k~Q~~W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~~-~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 107 VLVYNVETGVQ---RSQIQKKMQNGWVPQFSIDESLAARL-VSNEVQFYDLGSFKTIQ-HKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred eeeeeecccee---hhheehhhhcCcccccccchhhhhhh-hcceEEEEecCCcccee-eeeeccceeeEEecCCCCCce
Confidence 35777766422 12222222222689999988654432 35789999988744332 223677899999999743 3
Q ss_pred EEE-----EeCCCcEEEEEcCCCCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeC-----------CCcEEEEECCCC
Q 008393 344 LAT-----SSFDKTVRVWDADNPGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDG-----------DGEIRYWSINNG 405 (567)
Q Consensus 344 l~s-----~s~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-----------dg~I~iwd~~~~ 405 (567)
+|+ .+.-..|+||.+...+. .+..-.-....=..+.|++-|..|++..+. ..++++.++...
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 333 24456799998863111 111111112223457788777766654432 246888888855
Q ss_pred eeeEEE--eCCeeEEEEecCCCEEEEEEC--CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eE
Q 008393 406 SCTRVF--KGGTAQMRFQPHLGRYLAAAA--ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SV 477 (567)
Q Consensus 406 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~--dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I 477 (567)
.+.-.+ .+++.++.|++.+..++++.. -..+.|||++.. ++..+ ..++-+++-|+|.|++|+.++-+ .|
T Consensus 262 s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 262 SVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred eEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecCCCCCce
Confidence 554444 478999999999987766554 689999998754 33333 45777889999999999998866 59
Q ss_pred EEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc------CCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 478 RVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC------YQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 478 ~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~------dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
.|||+.+. +++..+... ..+-+.|+|||.+|+++.. |+.++||++....... .........+.|-|
T Consensus 339 EvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~-~~f~sEL~qv~W~P 410 (566)
T KOG2315|consen 339 EVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHE-KMFKSELLQVEWRP 410 (566)
T ss_pred EEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeeh-hhhhHhHhheeeee
Confidence 99999764 666666543 3455699999999999876 5789999986544331 11111456666654
No 265
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.25 E-value=2e-10 Score=122.36 Aligned_cols=198 Identities=17% Similarity=0.268 Sum_probs=155.6
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc----EEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL----ITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~----V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.+.|....+..+.+.++.+..++.+.+||...+.....+...... ..-+.++++.-++++|+.-+.|.+|+.....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn 166 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN 166 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence 444555777778889999999999999999887777666533322 2223446666789999999999999998534
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECC
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
... .+.+|.+.|.++.|+-+|. +++++++|..+++|++++.+...
T Consensus 167 ~p~-~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~--------------------------------- 211 (967)
T KOG0974|consen 167 KPI-RLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLG--------------------------------- 211 (967)
T ss_pred Ccc-eecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccC---------------------------------
Confidence 433 6889999999999999976 55599999999999999876432
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC-CceEEEEEeCCCCeEEEEEcCC
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG-NKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~-~~i~~~~~sp~~~~l~~~~~dg 520 (567)
...-+|...|+.++|.|+ .++++++| +.++|+.+. ..+..+..|. ..+..++..++...+++++.|+
T Consensus 212 -----~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~----~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds 280 (967)
T KOG0974|consen 212 -----CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG----TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDS 280 (967)
T ss_pred -----cccccccceeEEEEeccc--eeEEeccceEEEEEeccc----ceehhhhhhhhcceeEEEEcCCceEEEeeccCc
Confidence 134469999999999998 89999999 999997643 3444555553 4589999999999999999999
Q ss_pred eEEEEECCCC
Q 008393 521 SLELWNMSEN 530 (567)
Q Consensus 521 ~I~iwd~~~~ 530 (567)
.+++|++...
T Consensus 281 ~lk~~~l~~r 290 (967)
T KOG0974|consen 281 TLKLWDLNGR 290 (967)
T ss_pred chhhhhhhcc
Confidence 9999998653
No 266
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.25 E-value=3e-09 Score=105.28 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=186.9
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC------------
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK------------ 351 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg------------ 351 (567)
..-.-++..+.|||.|++|++... ..|.+|+...+..+..+. | ..|..+.|+|.++||.+=+..+
T Consensus 29 ~~~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 29 ESENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cccCcchhheeecCcchheehhhc-cceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 335668889999999999998754 458899888776555554 2 3499999999999999865433
Q ss_pred ---cEEEEEcCCCCceeEEeccCCCc--EE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCee----eEEEe-CCeeEEEE
Q 008393 352 ---TVRVWDADNPGYSLRTFMGHSAS--VM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSC----TRVFK-GGTAQMRF 420 (567)
Q Consensus 352 ---~I~iwd~~~~~~~~~~~~~h~~~--V~-~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~----~~~~~-~~~~~~~~ 420 (567)
.+.+||+.+ +..+..+.....+ .. -+.|+-+..+.+-. ....++|+++ ++.. .+.++ .++....|
T Consensus 106 ~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsi 181 (561)
T COG5354 106 SKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSI 181 (561)
T ss_pred ccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEe
Confidence 499999998 7777777766555 44 57777775544323 2457999997 3322 22333 46677788
Q ss_pred ecCCCE--EEEE-----ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC------------CeEEEEe
Q 008393 421 QPHLGR--YLAA-----AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE------------DSVRVWT 481 (567)
Q Consensus 421 ~~~~~~--l~~~-----~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~------------d~I~iwd 481 (567)
+|.++. ++.- ...+.+++|.+..+..+.+..-....-..+.|.+.|++|++-.. ..++|++
T Consensus 182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~ 261 (561)
T COG5354 182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR 261 (561)
T ss_pred cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence 887433 2322 22578999998877665543333333356889999987765321 2578888
Q ss_pred CCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEE--cCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIG--CYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~--~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
+... .+.......++|...+|.|.++.+++++ ..-.+.++|++.+ +.+......=+.+.|+|.+++++.++-
T Consensus 262 ~~e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 262 ITER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred eccc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecC
Confidence 7632 2222225578999999999998887766 4458999999887 444455556677889999999988886
Q ss_pred C---CcEEEcC
Q 008393 560 D---KFVKLWK 567 (567)
Q Consensus 560 D---g~I~iWd 567 (567)
| |.|-||+
T Consensus 336 ~nl~gni~i~~ 346 (561)
T COG5354 336 DNLQGNIEIFD 346 (561)
T ss_pred CccccceEEec
Confidence 6 5677764
No 267
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.24 E-value=6.6e-09 Score=107.04 Aligned_cols=252 Identities=15% Similarity=0.110 Sum_probs=160.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSL 378 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 378 (567)
+..+++++.+|.|..+|..+|+.+............+.. ++..+++++.++.|..+|.++ ++.+-.... ...+.+.
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~-~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAED-GKELWRAKL-SSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCC-CcEeeeecc-CceeecC
Confidence 568888888999999999999998876654432223332 466888899999999999987 444433332 2223221
Q ss_pred EEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEE------ecCCCEEEEEECCCeEEEEECCCCeEEEEecC
Q 008393 379 DFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRF------QPHLGRYLAAAAENVVSILDAETQACRLSLQG 452 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~ 452 (567)
-.. .++.++ .+..++.|+.||.++++.+..++.....+.+ .-.++.++++..++.+..+|.++++.+.....
T Consensus 141 p~v-~~~~v~-v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~ 218 (377)
T TIGR03300 141 PLV-ANGLVV-VRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRV 218 (377)
T ss_pred CEE-ECCEEE-EECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeecc
Confidence 111 133444 6677999999999999988776543211100 01235777888889999999999987765432
Q ss_pred CCC----C------e-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 453 HTK----P------I-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 453 h~~----~------V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
... . + .+..+ .+..++.++.+ .++.||..++ +.+...... .... ....+..|++++.+|
T Consensus 219 ~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~~--~~~~--p~~~~~~vyv~~~~G 289 (377)
T TIGR03300 219 ALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDAS--SYQG--PAVDDNRLYVTDADG 289 (377)
T ss_pred ccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeeccC--CccC--ceEeCCEEEEECCCC
Confidence 100 0 1 11111 24466666666 9999999877 333333311 1111 223566788899999
Q ss_pred eEEEEECCCCcEE-Eeccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 521 SLELWNMSENKTM-TLTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 521 ~I~iwd~~~~~~~-~~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.|+.+|..+++.+ ..... .....+... .+.+|++++.||.|++||
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence 9999999998876 22121 122233333 356888899999998875
No 268
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.23 E-value=1.9e-08 Score=98.72 Aligned_cols=281 Identities=15% Similarity=0.154 Sum_probs=182.9
Q ss_pred CccceeccCCc-cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeecccCcc--EEEEEECCC
Q 008393 265 GGRGMDVSQGF-SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSL--ITDVRFSPS 340 (567)
Q Consensus 265 ~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~--V~~i~fsp~ 340 (567)
.+++|-...+- .|+.+-.+.+|-..-.-+ . ++..+....||.=.+|.++ .|+-++ .|+.- -.+-..+.|
T Consensus 205 rGklWis~d~g~tFeK~vdl~~~vS~PmIV---~-~RvYFlsD~eG~GnlYSvdldGkDlr---rHTnFtdYY~R~~nsD 277 (668)
T COG4946 205 RGKLWISSDGGKTFEKFVDLDGNVSSPMIV---G-ERVYFLSDHEGVGNLYSVDLDGKDLR---RHTNFTDYYPRNANSD 277 (668)
T ss_pred cceEEEEecCCcceeeeeecCCCcCCceEE---c-ceEEEEecccCccceEEeccCCchhh---hcCCchhccccccCCC
Confidence 34678766655 788888888775432111 1 2233334456555555443 232222 22211 112233557
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEec-----cC-----CCcEEEEE-EcCCCCeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFM-----GH-----SASVMSLD-FHPNKDDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-----~h-----~~~V~~l~-~~p~~~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
|+.|+.. ..|.|.+||.++.......+. .. ..+..-+. |++-...+++..+ .|...|.+...+-.+.
T Consensus 278 GkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEE
Confidence 8776654 346699999887432111111 00 01111111 3333334554554 6788888777766665
Q ss_pred EE-eCCeeEEEEecCCCEEEEEECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC
Q 008393 410 VF-KGGTAQMRFQPHLGRYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS 486 (567)
Q Consensus 410 ~~-~~~~~~~~~~~~~~~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~ 486 (567)
.- ++.+.-..+..+...++.+..|| .+-|||.++++... +...-+.|.++..+++|++++.+.+. .|.++|+.++.
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 53 34566667777778889999988 99999999988654 44456889999999999999998888 99999999873
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC----eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. ...-....+-|+.+.|||++++|+.+--+| .|++||+.+++.+......+.=.+-+|.||+++|.--+
T Consensus 435 v---~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 435 V---RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred e---eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 2 222233456799999999999999887766 79999999999987766666667789999999876544
No 269
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.23 E-value=1.5e-08 Score=113.91 Aligned_cols=280 Identities=16% Similarity=0.227 Sum_probs=185.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEE----eCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC-
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLW----HTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD- 359 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vw----d~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~- 359 (567)
...+.|.++.|-+|..-++.+..+|.|.++ +..+. .+.....-...|.+++||||+..|+..+.+++|.+.+-+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~-~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f 151 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED-EIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF 151 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc-eeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence 446789999999999999999999999999 44432 222333446679999999999999999999988776432
Q ss_pred -----------CCC----------ceeEEecc------------------------CCCcEEEEEEcCCCCeEEEEEe--
Q 008393 360 -----------NPG----------YSLRTFMG------------------------HSASVMSLDFHPNKDDLICSCD-- 392 (567)
Q Consensus 360 -----------~~~----------~~~~~~~~------------------------h~~~V~~l~~~p~~~~li~s~~-- 392 (567)
..+ +.-..|.| +...-..|+|-.||.++.++.-
T Consensus 152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEc
Confidence 000 00000100 2234567889999987765543
Q ss_pred C---CCcEEEEECCCCeeeEEE---eCCeeEEEEecCCCEEEEEEC---CCeEEEEECCC---CeEEEEecCCCCCeeEE
Q 008393 393 G---DGEIRYWSINNGSCTRVF---KGGTAQMRFQPHLGRYLAAAA---ENVVSILDAET---QACRLSLQGHTKPIDSV 460 (567)
Q Consensus 393 ~---dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~---~~~~~~~~~h~~~V~~l 460 (567)
. -..|+||+-+ |....+- .+-...++|.|.|+.+++.-. ...|.+|.-+. ++....+......|..|
T Consensus 232 ~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l 310 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIEL 310 (928)
T ss_pred CCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEE
Confidence 2 2579999976 5543332 233467899999887777665 34677776443 23222332355689999
Q ss_pred EEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCC-eEEEEEcCCeEEEEEC----CCC----
Q 008393 461 CWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP-SLLVIGCYQSLELWNM----SEN---- 530 (567)
Q Consensus 461 ~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~----~~~---- 530 (567)
.|++|+.+||....|.|.+|-..+. ......++... ...+..+.|+|... .|.+.+.+|.+..+++ ..+
T Consensus 311 ~Wn~ds~iLAv~~~~~vqLWt~~NY-HWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~ 389 (928)
T PF04762_consen 311 AWNSDSEILAVWLEDRVQLWTRSNY-HWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSS 389 (928)
T ss_pred EECCCCCEEEEEecCCceEEEeeCC-EEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCC
Confidence 9999999999998889999998653 22233333322 23344588998654 3555555565544432 111
Q ss_pred ------------cEE----------------EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 531 ------------KTM----------------TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ------------~~~----------------~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+ ........|.+++|++++..+++-..||.|.+|+
T Consensus 390 ~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~ 454 (928)
T PF04762_consen 390 PNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE 454 (928)
T ss_pred ccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence 000 1112457899999999998899999999998874
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.23 E-value=1.4e-08 Score=116.21 Aligned_cols=231 Identities=11% Similarity=0.111 Sum_probs=154.6
Q ss_pred EEEEECCC-CCeEEEEeCCCcEEEEEcCCCCceeEEecc--------------CCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 333 TDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSLRTFMG--------------HSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 333 ~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--------------h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
..+++++. +.++++-..++.|++||... . .+..+.+ .-.....|++.++++.++++-...+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-N-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-C-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 35788775 55666667788899999864 3 2333321 112357899998877677666667889
Q ss_pred EEEECCCCeeeEEEe-------------------CCeeEEEEecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCC----
Q 008393 398 RYWSINNGSCTRVFK-------------------GGTAQMRFQPHLGRYLAA-AAENVVSILDAETQACRLSLQGH---- 453 (567)
Q Consensus 398 ~iwd~~~~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h---- 453 (567)
+++|+.++....... .....++++++++.++++ ..++.|++||..++.... +.+.
T Consensus 649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER 727 (1057)
T ss_pred EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence 999998765432211 123468899966655554 557899999998875432 2111
Q ss_pred -----------CCCeeEEEEcCCCCEEEEEe-CC-eEEEEeCCCCCCCceEE-----------Eeec--------CCCce
Q 008393 454 -----------TKPIDSVCWDPSGELLASVS-ED-SVRVWTVGSGSEGECVH-----------ELSC--------NGNKF 501 (567)
Q Consensus 454 -----------~~~V~~l~~sp~g~~l~s~s-~d-~I~iwd~~~~~~~~~i~-----------~~~~--------~~~~i 501 (567)
-.....|+|+|+++.|+++. .+ .|++||+.++.. ..+. .+.. .....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence 12345799999998555554 44 999999986532 1110 0000 01124
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccc--------------cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAH--------------EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h--------------~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..++++++|..+++-..++.|++||..++....+.+. -.....|+++++|+++++-+.++.|++||
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 5789999999777777888999999998876644332 23577899999999988888899999996
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.22 E-value=2.2e-08 Score=114.55 Aligned_cols=234 Identities=14% Similarity=0.171 Sum_probs=159.7
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEEeCCCCeeeeeecc--c------------CccEEEEEECCCCCeEEEEeC-CCcEEE
Q 008393 292 CCHFSSD-GKLLATGGHDKKAVLWHTDTLKSKTNLEE--H------------SSLITDVRFSPSMPRLATSSF-DKTVRV 355 (567)
Q Consensus 292 ~l~~s~d-g~~lasg~~dg~I~vwd~~~~~~~~~l~~--h------------~~~V~~i~fsp~~~~l~s~s~-dg~I~i 355 (567)
.++++++ +.++++-...+.|++||... ..+..+.+ . -..-..|++.++++.|+++.. .+.|++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788875 56777777788999999864 44433332 1 123578899998887766654 567999
Q ss_pred EEcCCCCceeEEeccC-----------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe------
Q 008393 356 WDADNPGYSLRTFMGH-----------------SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK------ 412 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h-----------------~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~------ 412 (567)
+|+.+ + .+.++.+- -.....++|+|++..++++...++.|++||..++.......
T Consensus 651 id~~~-~-~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVN-E-TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred EecCC-C-EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcccc
Confidence 99876 2 23333210 12346799999767788788889999999998875432110
Q ss_pred -----------CCeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecC-------------C--------CCCeeE
Q 008393 413 -----------GGTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQG-------------H--------TKPIDS 459 (567)
Q Consensus 413 -----------~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~-------------h--------~~~V~~ 459 (567)
.....++++|+++.++++.. ++.|++||+.++.......+ + -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 12345889999886665555 68999999987653221100 0 012358
Q ss_pred EEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--------------CCCceEEEEEeCCCCeEEEEEcCCeEEE
Q 008393 460 VCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--------------NGNKFHSCVFHPTYPSLLVIGCYQSLEL 524 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--------------~~~~i~~~~~sp~~~~l~~~~~dg~I~i 524 (567)
++++++|+++++...+ .|++||..++. +..+.+ .-.....++++++|+.+++-+.++.|++
T Consensus 809 vavd~dG~LYVADs~N~rIrviD~~tg~----v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 809 VLCAKDGQIYVADSYNHKIKKLDPATKR----VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred eeEeCCCcEEEEECCCCEEEEEECCCCe----EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 8999999988887777 99999997652 222221 1124678899999997777778889999
Q ss_pred EECCCCcE
Q 008393 525 WNMSENKT 532 (567)
Q Consensus 525 wd~~~~~~ 532 (567)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 272
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=7.4e-09 Score=103.36 Aligned_cols=268 Identities=14% Similarity=0.197 Sum_probs=181.6
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-----------CCcEEEEEcC
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-----------DKTVRVWDAD 359 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-----------dg~I~iwd~~ 359 (567)
+-+.|||-|.||++--.- -|.+|--++...+..+. |.+ |.-+.|||+.+||+|=+. ...++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 568999999999987644 48899877777666665 443 889999999999998653 2569999999
Q ss_pred CCCceeEEeccCC--Cc-EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EEe-CCeeEEEEecCCCEEEEEECC
Q 008393 360 NPGYSLRTFMGHS--AS-VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VFK-GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 360 ~~~~~~~~~~~h~--~~-V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~~-~~~~~~~~~~~~~~l~~~~~d 433 (567)
+ +...+.+.... .. -.-+.|+.|++++.... ...|.||+..+-..+. .++ .++....|+|.+..|+.-...
T Consensus 291 t-G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe 367 (698)
T KOG2314|consen 291 T-GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE 367 (698)
T ss_pred c-cchhcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence 8 66666665422 22 23467888876554333 4689999987744432 222 366778899997776665442
Q ss_pred -----CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-----------eEEEEeCCCCCCCceEEEeecC
Q 008393 434 -----NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-----------SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 434 -----g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-----------~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
..+.+..+.+++.+++..-|.-.=..+.|-.+|.+|+.--+. .+.|+.++....+...-. -
T Consensus 368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve---l 444 (698)
T KOG2314|consen 368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE---L 444 (698)
T ss_pred ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee---c
Confidence 467888888887777665554444567788889988764322 355666654322222222 2
Q ss_pred CCceEEEEEeCCCCeEEEEEcC---CeEEEEECCC-CcEEEe--ccccCCeeEEEEecCCCEEEEEEC---CCcEEEcC
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSE-NKTMTL--TAHEGLIAALAVSTETGYVASASH---DKFVKLWK 567 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~-~~~~~~--~~h~~~V~~l~~spdg~~l~s~s~---Dg~I~iWd 567 (567)
...|...+|.|.|+.+++.+.+ .++.+|.+++ .....+ .-.....+.+.|+|.|++++.+.. .|.+.++|
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D 523 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD 523 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence 4568888999999988887665 3889998874 222211 112255788999999999887653 46666664
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=2.5e-09 Score=98.89 Aligned_cols=196 Identities=21% Similarity=0.238 Sum_probs=144.0
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--eecccCccEEEEEECCC-CCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLEEHSSLITDVRFSPS-MPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~-~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
...++.|++.+.-++++-.+|.+.+-+........ .++.|...++...|+.. .+++++|++|+.+..||++.++..+
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 34578899999999999999999866665555444 88999999999999764 4588999999999999999555444
Q ss_pred E-EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-CeeeEE--EeCCeeEEEEecCCC-EEEEEECCCeEEEEE
Q 008393 366 R-TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-GSCTRV--FKGGTAQMRFQPHLG-RYLAAAAENVVSILD 440 (567)
Q Consensus 366 ~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-~~~~~~--~~~~~~~~~~~~~~~-~l~~~~~dg~I~i~d 440 (567)
. ..+.|...|.+|.-+|....+|++|+.|-.|++||.++ ++.+.. ..+++..+..+|... .+++++.-+..+|.+
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~ 282 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD 282 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence 3 35679999999999998888999999999999999994 555433 347788888887643 456666666667776
Q ss_pred CCCC--e---EEEEecCCCCCeeEEEEcCCCCEEEEEe-CC-eEE-EEeCCC
Q 008393 441 AETQ--A---CRLSLQGHTKPIDSVCWDPSGELLASVS-ED-SVR-VWTVGS 484 (567)
Q Consensus 441 ~~~~--~---~~~~~~~h~~~V~~l~~sp~g~~l~s~s-~d-~I~-iwd~~~ 484 (567)
...+ + .....+.|.+-+..-.|.....+|++|+ .| .++ +|-.-+
T Consensus 283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t 334 (339)
T KOG0280|consen 283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHIT 334 (339)
T ss_pred ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeecc
Confidence 6554 3 3344555666566666644445788865 33 434 665443
No 274
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.18 E-value=2.8e-08 Score=102.75 Aligned_cols=198 Identities=12% Similarity=0.086 Sum_probs=132.9
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCe-EEEEEeC--CCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDD-LICSCDG--DGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR 426 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~-li~s~~~--dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~ 426 (567)
.|.+-|.+. ...+.+.... .+....|+|+|+. ++++... +..|+++|+.+++..... .+......|+|++..
T Consensus 170 ~l~~~d~dg--~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~ 246 (419)
T PRK04043 170 NIVLADYTL--TYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSK 246 (419)
T ss_pred eEEEECCCC--CceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCE
Confidence 455555543 3334343333 7889999999986 4443333 457999999988765543 344556789999988
Q ss_pred EEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCC
Q 008393 427 YLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 427 l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
++.... +..|+++|+.+++.. .+..+........|+|||+.|+..+.. .|+++|+.++.... + .....
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~-~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l---t~~g~ 321 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLT-QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V---VFHGK 321 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEE-EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C---ccCCC
Confidence 876654 358999999887644 344344334456899999988887743 68888987663311 1 11111
Q ss_pred ceEEEEEeCCCCeEEEEEcC---------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 500 KFHSCVFHPTYPSLLVIGCY---------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~d---------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
. ...|+|+|++|+..... ..|++.|+.++....+... .......|+|||++|+....+
T Consensus 322 ~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 322 N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 1 24899999999887654 2789999998877655543 234468999999988766644
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=7e-10 Score=103.06 Aligned_cols=236 Identities=17% Similarity=0.316 Sum_probs=160.8
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCe-----eeeeecccC------------ccEEEEEECCCCC--eEEEE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS------------SLITDVRFSPSMP--RLATS 347 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h~------------~~V~~i~fsp~~~--~l~s~ 347 (567)
...|+++.|...|.||++|...|.|.+|.-+... ....+.+|. ..|..|.|..++. .++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999765322 222344443 4588888876543 67778
Q ss_pred eCCCcEEEEEcCCCC------------------c-----------------------eeEEe-ccCCCcEEEEEEcCCCC
Q 008393 348 SFDKTVRVWDADNPG------------------Y-----------------------SLRTF-MGHSASVMSLDFHPNKD 385 (567)
Q Consensus 348 s~dg~I~iwd~~~~~------------------~-----------------------~~~~~-~~h~~~V~~l~~~p~~~ 385 (567)
+.|.+|++|.+.... . +.+.+ ..|.-.|.+|.|..+..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~e 185 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKE 185 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchh
Confidence 889999999876420 0 01111 35777889999998876
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeE---EEeC--------CeeEEEEecCCC-EEEEEECCCeEEEEECCCCeE------E
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTR---VFKG--------GTAQMRFQPHLG-RYLAAAAENVVSILDAETQAC------R 447 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~---~~~~--------~~~~~~~~~~~~-~l~~~~~dg~I~i~d~~~~~~------~ 447 (567)
.++ ++ .|-.|.+|+++-..... .++. -++...|+|... .+...+..|.|++.|++.... +
T Consensus 186 t~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 186 TLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred eee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 555 44 58889999987533211 1221 245667888654 455677789999999984211 1
Q ss_pred E--E--------ecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC------------Cce---E
Q 008393 448 L--S--------LQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG------------NKF---H 502 (567)
Q Consensus 448 ~--~--------~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~------------~~i---~ 502 (567)
. . +.+-...|..+.|+++|+++++-..-+|+|||++..+ .++.++..|. ..| .
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdkF 341 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDKF 341 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeeeE
Confidence 1 1 1122346788999999999988777799999998653 4555554331 112 3
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
.|.|+.|.+.+++|+..+..-+|-
T Consensus 342 eisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 342 EISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred EEEecCCcccccccccccceeeec
Confidence 467888888899888877666665
No 276
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=6.4e-10 Score=104.74 Aligned_cols=224 Identities=17% Similarity=0.255 Sum_probs=145.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc----eeEEeccCC------------CcEEEEEEcCCCCe-EEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY----SLRTFMGHS------------ASVMSLDFHPNKDD-LICS 390 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~----~~~~~~~h~------------~~V~~l~~~p~~~~-li~s 390 (567)
..+.|.+|.|...|.+|++|..+|.|.+|.-+.... ....+..|. ..|..+.|.++++. .++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 455689999999999999999999999997654332 223333332 35788899876542 3445
Q ss_pred EeCCCcEEEEECCCCeeeEE---Ee--C---CeeEEE---EecCCCEEEEEECCCeEEEEECCCCeEEEEe-cCCCCCee
Q 008393 391 CDGDGEIRYWSINNGSCTRV---FK--G---GTAQMR---FQPHLGRYLAAAAENVVSILDAETQACRLSL-QGHTKPID 458 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~---~~--~---~~~~~~---~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~~V~ 458 (567)
.+.|.+|++|.+........ +. + .+..+. ..+..-.+. ..+.+.+ .+|...|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve---------------a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE---------------ASPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee---------------eeeeeeccccceeEee
Confidence 67899999999876543321 00 0 111111 111111111 1122233 35888899
Q ss_pred EEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC-----CceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCcE
Q 008393 459 SVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 459 ~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+|.++.|+..++++.+=.|.+|+++-....-.|-.++.+. .-|++..|+|.. +.++..+..|+|++.|++....
T Consensus 169 SIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 169 SISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred eeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhh
Confidence 9999999998876544499999997544333344444332 347888899964 5667778889999999984321
Q ss_pred -------EE----------eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 -------MT----------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 -------~~----------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. +..--..|..+.|+.+|+|+++-.. -+|+|||
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 11 1112246889999999999998654 4899997
No 277
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.16 E-value=5.3e-08 Score=100.72 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=147.2
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCe-EEEEeCC---CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCC
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-LATSSFD---KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~-l~s~s~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
..|.+-|.+... ...+.... .+....|+|||+. ++..+.+ ..|+++|+.+ +.. +.+....+.+....|+|||
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-g~~-~~lt~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-GKK-EKIASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-CcE-EEEecCCCcEEeeEECCCC
Confidence 355555554333 33233233 6788999999984 6654443 4688899977 332 3333355666778899999
Q ss_pred CeEEEEEeCC--CcEEEEECCCCeeeEEEeCC--eeEEEEecCCCEEEEEECC---CeEEEEECCCCeEEEEecCCCCCe
Q 008393 385 DDLICSCDGD--GEIRYWSINNGSCTRVFKGG--TAQMRFQPHLGRYLAAAAE---NVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 385 ~~li~s~~~d--g~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d---g~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
+.++++.+.+ ..|.++|+.++......... .....|+|++..++..+.. ..|+++|+.+++....... ...
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~- 322 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN- 322 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence 9998877655 46888898888755443332 3456799999988887753 2789999988876433322 111
Q ss_pred eEEEEcCCCCEEEEEeC--------C--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEE
Q 008393 458 DSVCWDPSGELLASVSE--------D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLEL 524 (567)
Q Consensus 458 ~~l~~sp~g~~l~s~s~--------d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~i 524 (567)
...|+|||++|+.... + .|.+.|+.++.. ..+... .......|+|||+.|+.....+ .|.+
T Consensus 323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~----~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~ 396 (419)
T PRK04043 323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI----RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI 396 (419)
T ss_pred -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe----EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence 2489999998887763 2 577888876632 222222 1223578999999888876543 5888
Q ss_pred EECCCCcEEEeccccCCeeEEE
Q 008393 525 WNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 525 wd~~~~~~~~~~~h~~~V~~l~ 546 (567)
+++.......+....+.+...+
T Consensus 397 ~~l~g~~~~~l~~~~g~~~~p~ 418 (419)
T PRK04043 397 IRLNYNKSFLFPLKVGKIQSID 418 (419)
T ss_pred EecCCCeeEEeecCCCccCCCC
Confidence 8988777666655555555443
No 278
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=126.82 Aligned_cols=208 Identities=17% Similarity=0.288 Sum_probs=163.5
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----Cee
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----GTA 416 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~~~ 416 (567)
+..+..+..++...-|..+..+ ..++.+-..|.++.-+|...+++ +|+.||.|++|....+..+..+.. .++
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~~Yl-tgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDPYYL-TGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCceEE-ecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence 3444455556666667665422 23344567788999999877666 999999999999999988877653 356
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEe---CC-eEEEEeCCCCCCCceEE
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVS---ED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s---~d-~I~iwd~~~~~~~~~i~ 492 (567)
.+.|+..|+.+-++..||.+.+|.+. .++....+.|......+.|-. ..+++++ ++ .+.+||..-.....+++
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 67899999999999999999999988 667777888999999988875 5566654 33 79999986554445666
Q ss_pred EeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 493 ELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 493 ~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+|....+++++.|....|++||.+|.|++||++..+.. .+.. +. ...++++|+..|.|+||+
T Consensus 2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence 789999999999999999999999999999999877654 3322 44 567899999999999995
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=4.2e-10 Score=125.33 Aligned_cols=190 Identities=21% Similarity=0.318 Sum_probs=153.5
Q ss_pred ceEEeeccCC-----CCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee
Q 008393 249 NVESFLSHDD-----TDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT 323 (567)
Q Consensus 249 ~v~~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~ 323 (567)
+|.++-+|.. +++.|+.++.|....+...-..++... ..|+.+.|+..|+.+..+..||.+.+|.+. .+...
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 4566655554 677889999999888866555555443 899999999999999999999999999987 67788
Q ss_pred eecccCccEEEEEECCCCCeEEEEe---CCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE
Q 008393 324 NLEEHSSLITDVRFSPSMPRLATSS---FDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW 400 (567)
Q Consensus 324 ~l~~h~~~V~~i~fsp~~~~l~s~s---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw 400 (567)
..+.|.....+..|-. ..+++++ .++.+.+||.--+.........|.+.++++++.|.. .++++|+.+|.|++|
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~-qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKH-QLLISGGRKGEVCLF 2363 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcc-eEEEecCCcCcEEEe
Confidence 8889999999999976 5777764 478899999765444333348899999999999984 577799999999999
Q ss_pred ECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 401 SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 401 d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|++..+.++.+.. +. ....++.+...|.|+||++.....++.+.
T Consensus 2364 D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2364 DIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 9999888877765 33 46788999999999999998877666654
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.06 E-value=1.5e-06 Score=83.87 Aligned_cols=214 Identities=18% Similarity=0.224 Sum_probs=142.8
Q ss_pred EEEEcC-CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC-CCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSS-DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS-PSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs-p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
+++|.+ ++.++++--..+.|..|+..+++... +.... ...+++. ++ ..|+.+..++ +.++|..+ +.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~-g~l~v~~~~~-~~~~d~~~-g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPD-GRLYVADSGG-IAVVDPDT-GKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTT-SEEEEEETTC-EEEEETTT-TEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccC-CEEEEEEcCc-eEEEecCC-CcEEEEee
Confidence 678888 77777777788999999998876644 22122 6677777 55 5666666655 56669887 33222222
Q ss_pred ----c-CCCcEEEEEEcCCCCeEEEEEeCC--------CcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEEC-C
Q 008393 370 ----G-HSASVMSLDFHPNKDDLICSCDGD--------GEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAA-E 433 (567)
Q Consensus 370 ----~-h~~~V~~l~~~p~~~~li~s~~~d--------g~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~-d 433 (567)
. .....+.+++.++|+ ++++.... |.|..++.. ++...... ...+.++|+|+++.++++.. .
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~ 155 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN 155 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence 1 346788999999987 55455433 568888888 55444433 35678999999998876554 7
Q ss_pred CeEEEEECCC--C-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEE
Q 008393 434 NVVSILDAET--Q-----ACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCV 505 (567)
Q Consensus 434 g~I~i~d~~~--~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~ 505 (567)
+.|..|++.. . +....+....+....++++.+|++.++.... .|.+++.. + +.+..+......+++|+
T Consensus 156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA 231 (246)
T ss_dssp TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence 8999999853 2 1222233323347889999999988777666 99999976 4 56666766666899999
Q ss_pred Ee-CCCCeEEEEE
Q 008393 506 FH-PTYPSLLVIG 517 (567)
Q Consensus 506 ~s-p~~~~l~~~~ 517 (567)
|. ++.+.|++.+
T Consensus 232 fgg~~~~~L~vTt 244 (246)
T PF08450_consen 232 FGGPDGKTLYVTT 244 (246)
T ss_dssp EESTTSSEEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 94 6767777654
No 281
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.06 E-value=5.5e-09 Score=98.63 Aligned_cols=244 Identities=12% Similarity=0.195 Sum_probs=169.8
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-ccCCCcEEEEEEcCCCCeEEEEEeCCCcE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF-MGHSASVMSLDFHPNKDDLICSCDGDGEI 397 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~~p~~~~li~s~~~dg~I 397 (567)
......+++|.+.|++...-|...-+++.+.|.+++||--.+.+.....+ ..-..+++++.+.++.. .++.|-..|++
T Consensus 14 p~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtv 92 (404)
T KOG1409|consen 14 PELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTV 92 (404)
T ss_pred hhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceE
Confidence 34556788999999999999988999999999999999765544433322 23457889999998855 45488889999
Q ss_pred EEEECCC----CeeeEEEe---CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEE
Q 008393 398 RYWSINN----GSCTRVFK---GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 398 ~iwd~~~----~~~~~~~~---~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~ 470 (567)
.-+.+.. ....+.+. ..+..+.|+-....+++.+.|..+.-.-.+.+..+..+.- ...-+++.+.-. +..
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~--~~f 169 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL--YAF 169 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE--EEE
Confidence 9887653 22223222 3455666777777788888777665554444432211110 001111111111 233
Q ss_pred EEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc--EEEeccccCCeeEEEE
Q 008393 471 SVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK--TMTLTAHEGLIAALAV 547 (567)
Q Consensus 471 s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~--~~~~~~h~~~V~~l~~ 547 (567)
.|... .|.+-.+.. .....+.++.+|...+.++.|.+....|+++..|..+.+||+..++ ...+.+|...|..+..
T Consensus 170 vGd~~gqvt~lr~~~-~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~ 248 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQ-NGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSY 248 (404)
T ss_pred ecccccceEEEEEee-cCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhh
Confidence 33322 344333322 2346788999999999999999999999999999999999997554 4478899999999999
Q ss_pred ecCCCEEEEEECCCcEEEcC
Q 008393 548 STETGYVASASHDKFVKLWK 567 (567)
Q Consensus 548 spdg~~l~s~s~Dg~I~iWd 567 (567)
.+--+.|++++.||.|.+|+
T Consensus 249 ~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 249 AQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhheeeeeccCCCeEEEEe
Confidence 88889999999999999996
No 282
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.06 E-value=1.4e-07 Score=92.81 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=115.5
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg-~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
+|.+.|.-..+..+++-++.|..|| .+.|||.++++... +...-+.|.++..+++|++++.+.....|.+.|+++ +.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididn-gn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDN-GN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecC-CC
Confidence 6788899999999999999999999 89999998876544 445667799999999999999999999999999998 44
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC----CcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD----GEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d----g~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~ 432 (567)
....-+...+-|+.++|+|++..+. -+--+ ..|+++|+..++....... ....-+|.|++.++..-+.
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iA-YafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIA-YAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEE-EecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence 4444445667899999999976444 44333 4799999999887766543 4456679999888776654
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=6.3e-10 Score=114.11 Aligned_cols=218 Identities=20% Similarity=0.283 Sum_probs=158.6
Q ss_pred cceeccCCccceeeeeeccCCCCeEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeE
Q 008393 267 RGMDVSQGFSFKEANSVRASTSKVICCHFSSDG-KLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRL 344 (567)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg-~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l 344 (567)
.+|++.....-.....+.+|+..|+.+-|.+.. ..||+++.|..+..||+.+. ..+..+..-......|+|+-....+
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v 173 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV 173 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence 356666655555666789999999999999865 58899999999999999864 3445555555567788998866667
Q ss_pred EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--E--eCCeeEEEE
Q 008393 345 ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--F--KGGTAQMRF 420 (567)
Q Consensus 345 ~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~--~~~~~~~~~ 420 (567)
.+.+....|++||+..+..++..+++|...|..++|.......+.+++.|++|++||......... . +..+..-++
T Consensus 174 lasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~ 253 (1081)
T KOG0309|consen 174 LASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRY 253 (1081)
T ss_pred hhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccc
Confidence 777777889999999988899999999999999999876666777999999999999876543222 1 223333344
Q ss_pred ecCCCEEEEEE-----------CCCeEEEEECCC-CeEEEEecCCCCCeeEEEEcCCC----------CEEEEEeCC-eE
Q 008393 421 QPHLGRYLAAA-----------AENVVSILDAET-QACRLSLQGHTKPIDSVCWDPSG----------ELLASVSED-SV 477 (567)
Q Consensus 421 ~~~~~~l~~~~-----------~dg~I~i~d~~~-~~~~~~~~~h~~~V~~l~~sp~g----------~~l~s~s~d-~I 477 (567)
.|-+.-++.-- .++....|+..+ ..+++.|.||.+.|...-|-..+ -.|++=+.| .+
T Consensus 254 ~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 254 LPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred cccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCce
Confidence 44443322221 123333444444 37889999999988776664322 268999999 99
Q ss_pred EEEeCCC
Q 008393 478 RVWTVGS 484 (567)
Q Consensus 478 ~iwd~~~ 484 (567)
++|-+.+
T Consensus 334 rlWpI~~ 340 (1081)
T KOG0309|consen 334 RLWPIDS 340 (1081)
T ss_pred EeeeccH
Confidence 9998864
No 284
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.05 E-value=1.5e-10 Score=120.54 Aligned_cols=262 Identities=16% Similarity=0.200 Sum_probs=179.1
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC--cE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK--TV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg--~I 353 (567)
.|+.+++|+.|+...+|++|+-+.++|++|+..|.|++|++.+|........|...|+.+.=+.+|..+++.+.-. ..
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 4677889999999999999999999999999999999999999999999999999999999999999877765433 47
Q ss_pred EEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE-eC------CeeEEEEecCCCE
Q 008393 354 RVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF-KG------GTAQMRFQPHLGR 426 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~------~~~~~~~~~~~~~ 426 (567)
.+|++.+.+...+.|.+ -.++.|+.....-+ .|.......+||+.++..+.++ .+ ..+...|+|+...
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 89999875655555553 35677765432223 4444567899999998876653 22 2356778998766
Q ss_pred EEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 427 YLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
++- || .+||.+..+.++.|......+ .-.|+|.|.-++.-+ .|||+++.. .++.... -.-..+.|
T Consensus 1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF~---lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTFK---LLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHHH---HHhcCcc--ccceEEEe
Confidence 653 22 589999988887776554333 345999999888766 489998763 3332221 11234567
Q ss_pred eCCCCeEEEEEc--C---------------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEE
Q 008393 507 HPTYPSLLVIGC--Y---------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 507 sp~~~~l~~~~~--d---------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
+..|..+++.-. | ...+-||......+........|..++-++...+|+.-
T Consensus 1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEE
Confidence 777765544320 0 02233333333333223334456666666666666543
No 285
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=1.4e-07 Score=97.90 Aligned_cols=211 Identities=15% Similarity=0.167 Sum_probs=151.6
Q ss_pred cCCccceeeeeeccCCCCeEEEEEcCCC------------CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECC
Q 008393 272 SQGFSFKEANSVRASTSKVICCHFSSDG------------KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 272 ~~~~~~~~~~~l~~h~~~V~~l~~s~dg------------~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp 339 (567)
.+...++.+..+..|...|+.+.|.|.. -+||++...|.|.+||+..+..+..+..|.+.|..++|-+
T Consensus 40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeee
Confidence 3345567888999999999999998732 2577888899999999999999999999999999999976
Q ss_pred ---CC-CeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC-------Ceee
Q 008393 340 ---SM-PRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN-------GSCT 408 (567)
Q Consensus 340 ---~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~-------~~~~ 408 (567)
+. ..|+.-....+|.+|+.++ +..+-.+........|+.+.|-...-++.-+..|.|.+-+.-. ++..
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 3566667778899999998 4444444444556677898887665555566677777766432 1111
Q ss_pred EEEeC----------------------------CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEE
Q 008393 409 RVFKG----------------------------GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSV 460 (567)
Q Consensus 409 ~~~~~----------------------------~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l 460 (567)
..-.. ....++|+|.-..++.......+.++|++-..++....-..+.+.-+
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv 278 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFV 278 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCccee
Confidence 11110 01225688988889999999999999999887777766555655566
Q ss_pred EEcCCC--CEEEEEeCC-eEEEEeCC
Q 008393 461 CWDPSG--ELLASVSED-SVRVWTVG 483 (567)
Q Consensus 461 ~~sp~g--~~l~s~s~d-~I~iwd~~ 483 (567)
.|-|++ ..|++...+ .+.+|--+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 666654 367777766 77776543
No 286
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.00 E-value=3.4e-07 Score=87.75 Aligned_cols=213 Identities=15% Similarity=0.052 Sum_probs=138.0
Q ss_pred CCcEEEEeCCCCeeeeeeccc--CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~ 385 (567)
+|.|..||..+++.+.....- .....+. ..+++.++++++.++.|..||..+ ++.+-.+.. ...+...... .+.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-G~~~W~~~~-~~~~~~~~~~-~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-GKVLWRFDL-PGPISGAPVV-DGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-SEEEEEEEC-SSCGGSGEEE-ETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-CCEEEEeec-cccccceeee-ccc
Confidence 688999999999999887541 1222211 233566888889999999999988 555444442 2221111122 234
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEE-eCC------eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCC--
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVF-KGG------TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKP-- 456 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~-~~~------~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~-- 456 (567)
.++ .+..++.|+.+|..+++.+..+ ... .........++.++++..++.|..+|+++|+.+.........
T Consensus 78 ~v~-v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 78 RVY-VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp EEE-EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccc-cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 444 5567889999999999998874 321 122334444788999999999999999999999888764422
Q ss_pred --------eeEEEEcCCCCEEEEEeCC-e-EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEE
Q 008393 457 --------IDSVCWDPSGELLASVSED-S-VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWN 526 (567)
Q Consensus 457 --------V~~l~~sp~g~~l~s~s~d-~-I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd 526 (567)
+..-.+..++ .++.++.+ . +.+ |+.+++ .+.... ...+.. .....+..|++++.++.|.+||
T Consensus 157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~---~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE---KLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp --EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE---EEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEE
T ss_pred cceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC---EEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEE
Confidence 1222233345 55555545 4 555 998873 333222 222222 2557788888888999999999
Q ss_pred CCCCcEE
Q 008393 527 MSENKTM 533 (567)
Q Consensus 527 ~~~~~~~ 533 (567)
+++++..
T Consensus 229 ~~tG~~~ 235 (238)
T PF13360_consen 229 LKTGKVV 235 (238)
T ss_dssp TTTTEEE
T ss_pred CCCCCEE
Confidence 9999865
No 287
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.00 E-value=2e-06 Score=82.97 Aligned_cols=215 Identities=9% Similarity=0.055 Sum_probs=138.6
Q ss_pred EEEEECC-CCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEc-CCCCeEEEEEeCCCcEEEEECCCCeeeEE
Q 008393 333 TDVRFSP-SMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH-PNKDDLICSCDGDGEIRYWSINNGSCTRV 410 (567)
Q Consensus 333 ~~i~fsp-~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~-p~~~~li~s~~~dg~I~iwd~~~~~~~~~ 410 (567)
.+++|.+ ++.++++-...+.|..|+..+... ..+.... ...+++. ++ ..++ .+.. +.+.++|+.+++....
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~~--~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLPG--PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESSS--EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecCC--CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEE
Confidence 3578888 666666666789999999987322 2222222 7777887 55 5555 4443 4566669999866544
Q ss_pred EeC--------CeeEEEEecCCCEEEEEECC--------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 411 FKG--------GTAQMRFQPHLGRYLAAAAE--------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 411 ~~~--------~~~~~~~~~~~~~l~~~~~d--------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
... ..+.+++.+++..+++.... +.|+.++.. ++...... .-...+.|+|+|+++.|+.+..
T Consensus 76 ~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEET
T ss_pred eeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeeccc
Confidence 332 24668899998755555443 568888888 55443333 3455789999999998876554
Q ss_pred C--eEEEEeCCCCCC-C---ceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEE
Q 008393 475 D--SVRVWTVGSGSE-G---ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAV 547 (567)
Q Consensus 475 d--~I~iwd~~~~~~-~---~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~ 547 (567)
. .|..|++..... . ..+..+.......-.+++..+|+..++....+.|.++|.. ++.+ .+......+++++|
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~f 232 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAF 232 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEE
Confidence 4 888898864322 1 2222333333347889999999977777788999999988 6655 34433458999999
Q ss_pred e-cCCCEEEEE
Q 008393 548 S-TETGYVASA 557 (567)
Q Consensus 548 s-pdg~~l~s~ 557 (567)
. ++.+.|+..
T Consensus 233 gg~~~~~L~vT 243 (246)
T PF08450_consen 233 GGPDGKTLYVT 243 (246)
T ss_dssp ESTTSSEEEEE
T ss_pred ECCCCCEEEEE
Confidence 4 665555443
No 288
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=3.1e-09 Score=98.84 Aligned_cols=234 Identities=17% Similarity=0.296 Sum_probs=144.5
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce----eEEeccCC------------CcEEEEEEcCCC-CeEEEE
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS----LRTFMGHS------------ASVMSLDFHPNK-DDLICS 390 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~----~~~~~~h~------------~~V~~l~~~p~~-~~li~s 390 (567)
..+.|+++.|...|.||++|...|.|.+|.-+....+ +..+.+|. ..|..|.|..++ ..-++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 3456999999999999999999999999987653211 22344443 347778876543 333445
Q ss_pred EeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE--------C-CCeEEEEECCCCeEEEEecCCCCCeeEEE
Q 008393 391 CDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA--------A-ENVVSILDAETQACRLSLQGHTKPIDSVC 461 (567)
Q Consensus 391 ~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~-dg~I~i~d~~~~~~~~~~~~h~~~V~~l~ 461 (567)
.+.|.+|++|.+......-+-......-.-+|.++-+.+.. . +..|..+ .+...-..|...|.+|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS 179 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence 67899999999886643322211111111111111111000 0 0111111 01111245888899999
Q ss_pred EcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCC-----CceEEEEEeCCC-CeEEEEEcCCeEEEEECCCCc----
Q 008393 462 WDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNG-----NKFHSCVFHPTY-PSLLVIGCYQSLELWNMSENK---- 531 (567)
Q Consensus 462 ~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~-----~~i~~~~~sp~~-~~l~~~~~dg~I~iwd~~~~~---- 531 (567)
|..|...++++.+=.|.+|++.-....-.+..++.+. .-|++..|+|.. ..+...+..|.|++-|++...
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 9999888776544499999997554333444444443 337788899964 556667788999999998322
Q ss_pred -EE----E--------eccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 -TM----T--------LTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 -~~----~--------~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+. . +.+-...|..+.|+++|+||++-+. -+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD 307 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence 11 1 1122356888999999999987765 4799997
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=4.5e-08 Score=101.40 Aligned_cols=235 Identities=15% Similarity=0.204 Sum_probs=155.7
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCC------------CeEEEEeCCCcEEEEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM------------PRLATSSFDKTVRVWD 357 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~------------~~l~s~s~dg~I~iwd 357 (567)
-.++.|++.| +||.|+ ...|.|.|..+.+.+..+..|...|+.+.|.|-. -.||++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4578999987 777776 5688999999999999999999999999997721 2577888889999999
Q ss_pred cCCCCceeEEeccCCCcEEEEEEcCC---CCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 358 ADNPGYSLRTFMGHSASVMSLDFHPN---KDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 358 ~~~~~~~~~~~~~h~~~V~~l~~~p~---~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
... ...+..+..|..+|..++|.+. ..+++++-..-.+|.+|+..+|+
T Consensus 96 ~~~-~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~---------------------------- 146 (1062)
T KOG1912|consen 96 FVL-ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE---------------------------- 146 (1062)
T ss_pred ehh-hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----------------------------
Confidence 987 6666778888999999998653 22344444445555555555554
Q ss_pred eEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCC-EEEEEeCCeEEEEeCCC-CCC---CceEEEeecCCC---------
Q 008393 435 VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGE-LLASVSEDSVRVWTVGS-GSE---GECVHELSCNGN--------- 499 (567)
Q Consensus 435 ~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~-~l~s~s~d~I~iwd~~~-~~~---~~~i~~~~~~~~--------- 499 (567)
...+.........|+.++| |.+ +.+.++.+.|.+-+.-. .+. .+.+..-..|..
T Consensus 147 -----------k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~a 215 (1062)
T KOG1912|consen 147 -----------KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETA 215 (1062)
T ss_pred -----------eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhh
Confidence 4444433334445556655 222 33334444333333221 111 111111111100
Q ss_pred ----------------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCC--CEEEEEECC
Q 008393 500 ----------------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTET--GYVASASHD 560 (567)
Q Consensus 500 ----------------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg--~~l~s~s~D 560 (567)
....++|+|..+.++.......+.++|++-..++ .+.-..+.+.-+.|-|++ ..|++.-.|
T Consensus 216 t~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 216 TGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred ccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 0123578999888888888899999999988777 444445566677777766 468888899
Q ss_pred CcEEEc
Q 008393 561 KFVKLW 566 (567)
Q Consensus 561 g~I~iW 566 (567)
|.+.||
T Consensus 296 G~ltir 301 (1062)
T KOG1912|consen 296 GRLTIR 301 (1062)
T ss_pred CeEEEE
Confidence 999998
No 290
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.96 E-value=1.5e-07 Score=86.25 Aligned_cols=220 Identities=8% Similarity=-0.014 Sum_probs=149.7
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe---CCeeE
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK---GGTAQ 417 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~---~~~~~ 417 (567)
..+||.|+..|...+|...+..........|...|+-+.-.-+...-+..++.|.++++.++..+....... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 448999999999999999875555555555555444322222222233467788888888887654433332 23677
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCC-eEE-E-EecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCc--eE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQ-ACR-L-SLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGE--CV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~-~~~-~-~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~--~i 491 (567)
+.+++++...++.+....|..|.+... +.+ . .....++.-.+..|+.....+|++..| ++.|||++....+. .-
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s 243 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS 243 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc
Confidence 889999999999999999999988653 322 2 233345556788999999999999999 99999998753321 12
Q ss_pred EEeecCCCceEEEEEeCCCC--eEEEEEcCCeEEEEECCCCcEEE--------eccccC-CeeEEEEecCCCEEEEEECC
Q 008393 492 HELSCNGNKFHSCVFHPTYP--SLLVIGCYQSLELWNMSENKTMT--------LTAHEG-LIAALAVSTETGYVASASHD 560 (567)
Q Consensus 492 ~~~~~~~~~i~~~~~sp~~~--~l~~~~~dg~I~iwd~~~~~~~~--------~~~h~~-~V~~l~~spdg~~l~s~s~D 560 (567)
..-..|.+.+..|.|++.|. +|+..-.-+.+.+.|++++.... ...|.. .|..-.|+.++..+.+.+++
T Consensus 244 strp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 244 STRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 23345788899999998664 45555555789999999886441 223333 37777888777666555544
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.96 E-value=7.3e-07 Score=100.45 Aligned_cols=234 Identities=12% Similarity=0.215 Sum_probs=157.6
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEE----EcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVW----DADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iw----d~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
..+.|.++.|.++...|+.+..+|.|.++ +... ..+.....-...|.+++|+||+..++ ..+.+++|.+.+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~Ella-~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDEELLA-LVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCcCEEE-EEeCCCEEEEEecc
Confidence 45679999999999999999999999999 5543 23344444567899999999977555 55557777665421
Q ss_pred ---------------C--------CeeeEE---------------------------EeCCeeEEEEecCCCEEEEEEC-
Q 008393 404 ---------------N--------GSCTRV---------------------------FKGGTAQMRFQPHLGRYLAAAA- 432 (567)
Q Consensus 404 ---------------~--------~~~~~~---------------------------~~~~~~~~~~~~~~~~l~~~~~- 432 (567)
. |+.... .......++|..||.++++.+.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 0 000000 1113355779999999888775
Q ss_pred --C---CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEE
Q 008393 433 --E---NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHS 503 (567)
Q Consensus 433 --d---g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~ 503 (567)
. ..|+||+-+ |....+-..-.+--.+++|-|.|++||+.-. . .|.+|.-+.....+..-.+......+..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 478999977 5544443333333457899999999999875 2 6888876544433433333345678999
Q ss_pred EEEeCCCCeEEEEEcCCeEEEEECCCCcEE---Eec-cccCCeeEEEEecCCC-EEEEEECCCcEEEc
Q 008393 504 CVFHPTYPSLLVIGCYQSLELWNMSENKTM---TLT-AHEGLIAALAVSTETG-YVASASHDKFVKLW 566 (567)
Q Consensus 504 ~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~---~~~-~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW 566 (567)
+.|++++..|++...|. |.+|-..+...+ .+. .....+..+.|+|... .|...+.+|.+..+
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~ 376 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY 376 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence 99999999888877554 999999887755 222 2233455699998654 36566655665543
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=1.9e-09 Score=107.10 Aligned_cols=204 Identities=19% Similarity=0.294 Sum_probs=144.8
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
+..+.+|...|+.++--.+.+.+++++.|++|++|.+...+. +..++..|+.+|.++.|..+.. .+++| ||
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence 345678999999998888888999999999999999975432 5567889999999999997754 44454 89
Q ss_pred cEEEEECCCCeeeEEEe-----CCeeEEEEec--CCCEEEEE-ECCCeEEEEECCCCeEEEEecC-----CCCCeeEEEE
Q 008393 396 EIRYWSINNGSCTRVFK-----GGTAQMRFQP--HLGRYLAA-AAENVVSILDAETQACRLSLQG-----HTKPIDSVCW 462 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~-----~~~~~~~~~~--~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~-----h~~~V~~l~~ 462 (567)
.|.+||.--++.+.... +....+..-+ +...++++ +.+.+|+++|.+..+....++. ...-+.+++.
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999987776654322 2222333322 33445555 4588999999999876655543 3456889999
Q ss_pred cCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEE-EECCCCcE
Q 008393 463 DPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL-WNMSENKT 532 (567)
Q Consensus 463 sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i-wd~~~~~~ 532 (567)
.+.|++++.+-.. +|.+.|.++| +.+..+...+.....++ .|....|+....|.++.+ |-.-.+..
T Consensus 885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCee
Confidence 9999999998777 9999999988 44444433332222222 345556777777788877 76655543
No 293
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.94 E-value=4.5e-07 Score=93.95 Aligned_cols=252 Identities=11% Similarity=0.019 Sum_probs=155.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcE---
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASV--- 375 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V--- 375 (567)
+..++.++.+|.+..+|.++|+.+............... .+..++.+..++.|..+|..+ ++.+-.+......+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESD-GAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccC-CCEeeeecCCCCccccc
Confidence 456777888999999999999998877654322222222 234677788899999999988 44443333211100
Q ss_pred --EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe----e------EEEEec--CCCEEEEEECCCeEEEEEC
Q 008393 376 --MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT----A------QMRFQP--HLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 376 --~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~----~------~~~~~~--~~~~l~~~~~dg~I~i~d~ 441 (567)
.+.... +.. ++.++.++.+..+|..+++.+..+.... . .+..+| .++.+++++.++.+..+|.
T Consensus 197 ~~~sP~v~--~~~-v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~ 273 (394)
T PRK11138 197 GESAPATA--FGG-AIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDL 273 (394)
T ss_pred CCCCCEEE--CCE-EEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEEC
Confidence 111111 223 4467779999999999998766543210 0 011111 3578888888999999999
Q ss_pred CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCCeEEEEEcC
Q 008393 442 ETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 442 ~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~~l~~~~~d 519 (567)
.+++.+.+.... ....+.. .+..|+.++.+ .|..+|..+++ .+...... ........+ .+.+|++++.+
T Consensus 274 ~tG~~~W~~~~~--~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~ 344 (394)
T PRK11138 274 RSGQIVWKREYG--SVNDFAV--DGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVL--YNGYLVVGDSE 344 (394)
T ss_pred CCCCEEEeecCC--CccCcEE--ECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEE--ECCEEEEEeCC
Confidence 999887765421 1112222 35566666666 99999998773 23222111 111222222 25578999999
Q ss_pred CeEEEEECCCCcEE-EeccccCCee-EEEEecCCCEEEEEECCCcEEEcC
Q 008393 520 QSLELWNMSENKTM-TLTAHEGLIA-ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 520 g~I~iwd~~~~~~~-~~~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.|+++|..+++.+ ........+. ...+ .+..|+.++.||.|+.++
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 99999999999877 3322222222 2233 244788889999988763
No 294
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.93 E-value=8.4e-07 Score=85.21 Aligned_cols=241 Identities=15% Similarity=0.134 Sum_probs=161.9
Q ss_pred EEEEcC-CCCeEEEEeCCC-cEEEEeCCCCeeeeeecccCccE--EEEEECCCCCeEEEEeC-----CCcEEEEEcCCCC
Q 008393 292 CCHFSS-DGKLLATGGHDK-KAVLWHTDTLKSKTNLEEHSSLI--TDVRFSPSMPRLATSSF-----DKTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~-dg~~lasg~~dg-~I~vwd~~~~~~~~~l~~h~~~V--~~i~fsp~~~~l~s~s~-----dg~I~iwd~~~~~ 362 (567)
.++.+| ++..++.+-.-| ...+||..+++....+....+.- -.-+|++||++|++.-. .|.|-|||....-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 678888 556667776655 46789999998887766433322 23589999999998744 5789999999656
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCC--CEEEEEECCCeEEEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHL--GRYLAAAAENVVSILD 440 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~dg~I~i~d 440 (567)
..+..+..|.-.-..|.+.|+++.|++. +|-|.- +|+. .++-....+..+.+.|
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVA---NGGI~T---------------------hpd~GR~kLNl~tM~psL~~ld 144 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVA---NGGIET---------------------HPDSGRAKLNLDTMQPSLVYLD 144 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEE---cCCCcc---------------------CcccCceecChhhcCCceEEEe
Confidence 6778888888888899999999777754 222221 1111 1233344566777788
Q ss_pred CCCCeEEEE--e--cCCCCCeeEEEEcCCCCEEEEEeCC--------eEEEEeCCCCCCCceEE----EeecCCCceEEE
Q 008393 441 AETQACRLS--L--QGHTKPIDSVCWDPSGELLASVSED--------SVRVWTVGSGSEGECVH----ELSCNGNKFHSC 504 (567)
Q Consensus 441 ~~~~~~~~~--~--~~h~~~V~~l~~sp~g~~l~s~s~d--------~I~iwd~~~~~~~~~i~----~~~~~~~~i~~~ 504 (567)
..+++.+.+ + ..|...|..+++..+|..++..-.. -|.+++... ....+. ....-...+-++
T Consensus 145 ~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSI 222 (305)
T PF07433_consen 145 ARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSI 222 (305)
T ss_pred cCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEE
Confidence 888887766 4 3377789999999999866655321 244444322 111111 112234678899
Q ss_pred EEeCCCCeEEEEEcC-CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 505 VFHPTYPSLLVIGCY-QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 505 ~~sp~~~~l~~~~~d-g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++.++..+++.+-. +.+.+||..++..+....- ..+..++..+++ ++++.+.-
T Consensus 223 a~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~G 277 (305)
T PF07433_consen 223 AADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQG 277 (305)
T ss_pred EEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCCc
Confidence 999999988777765 5899999999998854433 235666666655 66665543
No 295
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.93 E-value=1.7e-08 Score=103.38 Aligned_cols=228 Identities=16% Similarity=0.203 Sum_probs=163.2
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc--------------eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY--------------SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~--------------~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
....|+.|+....+|++|+.||.++|..+.+... .-.++.||...|.-+.|+.+...|- +.+.+|
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT-tSDt~G 93 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT-TSDTSG 93 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccc-ccCCCc
Confidence 3478999999999999999999999998865211 1246779999999999998765544 888899
Q ss_pred cEEEEECCCCeeeEEE-----eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEE-EecCCCCCeeEEEEcCCCCEE
Q 008393 396 EIRYWSINNGSCTRVF-----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRL-SLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~-~~~~h~~~V~~l~~sp~g~~l 469 (567)
.|.+|-+-.+.....+ +.-+..++|+.+|.++..+..||.|.+=.++..+... .+++ .....+.|++|.+.+
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDLEQA 171 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccHHHH
Confidence 9999998877644322 2346788999999999999999998887776554321 2222 223468899999888
Q ss_pred EEEeCC-eEEEEeCCCCCC----CceEEE----eecCCCceEEEEE--------eCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 470 ASVSED-SVRVWTVGSGSE----GECVHE----LSCNGNKFHSCVF--------HPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~~~----~~~i~~----~~~~~~~i~~~~~--------sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
+.+-.+ .+.+||....-. ..|.-. +......|..+.| -|+.+.|+++..+|.+.|..-.+...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~ 251 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE 251 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence 877777 899999754311 112111 1112223444444 35888999999999988876554443
Q ss_pred EEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 533 MTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 533 ~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..+....-.|....|+++|..||.+|.|
T Consensus 252 Pvv~dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 252 PVVVDTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred CeEEecccEeecceecCCCcEEEEccCc
Confidence 3333333678889999999999999865
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.3e-08 Score=99.20 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=164.8
Q ss_pred CCCCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCeeeeeeccc--CccEEEEEE
Q 008393 261 PRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGH-DKKAVLWHTDTLKSKTNLEEH--SSLITDVRF 337 (567)
Q Consensus 261 ~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~f 337 (567)
+.|+..+-|-...-.-.+.+..++.|.+.|.+++.+-||.++++++. |..++++|+++...+..++-. .+.+. +..
T Consensus 27 SlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~ 105 (558)
T KOG0882|consen 27 SLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVT 105 (558)
T ss_pred ecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceE-Eec
Confidence 34455666655554455678889999999999999999999999877 999999999987766444321 22221 122
Q ss_pred CCCCC--eEEEE-eCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 338 SPSMP--RLATS-SFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 338 sp~~~--~l~s~-s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
++... .|+++ -.++.|.|+|-...... ...-.-|..+|.++.+.+.++..+ +....|.|..|..+. .+.-
T Consensus 106 skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~v-SiD~~gmVEyWs~e~-----~~qf 179 (558)
T KOG0882|consen 106 SKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAV-SIDISGMVEYWSAEG-----PFQF 179 (558)
T ss_pred CCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccccee-eccccceeEeecCCC-----cccC
Confidence 22211 33333 45789999998764433 334456899999999999987555 888889999998763 0111
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEE
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~ 492 (567)
+...+. |.++...-+..+.-.+....+++|+|+|..+.+-+.| .|+++++.+++....+.
T Consensus 180 Pr~~l~-------------------~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 180 PRTNLN-------------------FELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccc-------------------ccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 111111 1222222222333345667889999999999998888 99999998774332221
Q ss_pred Ee-----------------------------ecC-CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecccc
Q 008393 493 EL-----------------------------SCN-GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHE 539 (567)
Q Consensus 493 ~~-----------------------------~~~-~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~ 539 (567)
+. ..+ ....+.++|...+++|+.++-- .|+++++.++.+..+.+..
T Consensus 241 E~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 241 EVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILGKD 316 (558)
T ss_pred ccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEeccc
Confidence 11 111 1224567899999988887654 4888999888877555443
No 297
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.89 E-value=2.6e-07 Score=84.62 Aligned_cols=196 Identities=10% Similarity=0.049 Sum_probs=127.8
Q ss_pred CCcEEEEEcCCCCc-eeEEeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCCCeeeEEE-eCCeeEEE----
Q 008393 350 DKTVRVWDADNPGY-SLRTFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINNGSCTRVF-KGGTAQMR---- 419 (567)
Q Consensus 350 dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~~~~~~~~-~~~~~~~~---- 419 (567)
...|.+|++-+..+ .+..+. .+.|.|. ...+++.|+.-|...+|...+.+....+ ......+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y~-------g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFYT-------GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred eeeeEeccccCCchhhEEeee-------cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 34478888876443 233332 3444331 2336778889999999999876543322 11222111
Q ss_pred EecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCC
Q 008393 420 FQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNG 498 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~ 498 (567)
+......+..++.|.++++++++.+.....+....-.+.++++++|++++++.++. .|..|.+....+...........
T Consensus 124 ~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~ 203 (344)
T KOG4532|consen 124 YCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS 203 (344)
T ss_pred hcccccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC
Confidence 22223457777888888888776654333322222338899999999999999988 99999997543211111233334
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE------EeccccCCeeEEEEecCCC
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM------TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~------~~~~h~~~V~~l~~spdg~ 552 (567)
..-.+..|+.....++++..||++.|||++..... ....|.+.++.+.|++.|.
T Consensus 204 D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 204 DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred CCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCc
Confidence 44456689999999999999999999999875433 3446899999999998663
No 298
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1.5e-07 Score=90.84 Aligned_cols=248 Identities=16% Similarity=0.190 Sum_probs=147.6
Q ss_pred EEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEE
Q 008393 311 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 311 I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~ 389 (567)
+++.+..+++....+..|...|.+++|+|..+ +|..++.+.+|+|.|+++ ...+..+..+ ..+++++|.-+..++|+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-SCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-ceeeeheecc-CCceeeeeccCCcceeE
Confidence 66666667777777788999999999999877 788999999999999998 6667777767 88999999999999999
Q ss_pred EEeCCCcEEEEECCCCeeeE-EEe-----CCeeEE------EEecCCCEEEEEECCCeEEEEEC----CCCeEEEEecCC
Q 008393 390 SCDGDGEIRYWSINNGSCTR-VFK-----GGTAQM------RFQPHLGRYLAAAAENVVSILDA----ETQACRLSLQGH 453 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~-~~~-----~~~~~~------~~~~~~~~l~~~~~dg~I~i~d~----~~~~~~~~~~~h 453 (567)
.|..+|.|.|||++..+-.. .+. .++..+ ...+.++.++....+- ..|+. ....++..+. .
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l--~f~ei~~s~~~~p~vlele-~ 329 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVL--QFYEIVFSAECLPCVLELE-P 329 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhh--hhhhhhccccCCCcccccC-C
Confidence 99999999999998754321 111 112221 2333444444444332 23332 2222222222 2
Q ss_pred CCCeeEEEEcCCCC-EEEEEeCC----eEEE----EeCCCCCCCceEEEe-ecC-CCc------eEEEEEeCCCCeEEEE
Q 008393 454 TKPIDSVCWDPSGE-LLASVSED----SVRV----WTVGSGSEGECVHEL-SCN-GNK------FHSCVFHPTYPSLLVI 516 (567)
Q Consensus 454 ~~~V~~l~~sp~g~-~l~s~s~d----~I~i----wd~~~~~~~~~i~~~-~~~-~~~------i~~~~~sp~~~~l~~~ 516 (567)
.+...++.+.+..+ +|++.-.+ .++. -|...| ..+... .++ +.+ -..+.-.++.++|+..
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG---~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~ 406 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDG---FPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV 406 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccC---ceeeeecccccCCcccccccccceeccccccEEEEe
Confidence 34444555555333 33333321 1111 111111 111100 011 111 0111223445555544
Q ss_pred Ec-CCeEEEEECCCCcEEEeccccCCeeEEEEec--CCCEEEEEECCCcEEEcC
Q 008393 517 GC-YQSLELWNMSENKTMTLTAHEGLIAALAVST--ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~-dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp--dg~~l~s~s~Dg~I~iWd 567 (567)
+. .+.+.+||..+.+.+.-.....+|.+++... .+.||++-. |..++||+
T Consensus 407 gd~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk 459 (463)
T KOG1645|consen 407 GDSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK 459 (463)
T ss_pred cCCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence 43 4699999999999885555668888887643 234666655 44677764
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.86 E-value=8.1e-07 Score=92.03 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=152.0
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCc----------cEE-EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS----------LIT-DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~----------~V~-~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..+++++.++.|.-+|.++|+.+........ .+. .+.. .+..++.++.+|.++.+|.++ ++.+-.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~t-G~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAED-GEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCC-CCCccc
Confidence 55777778889999999999998877653221 000 0111 345778888999999999988 443333
Q ss_pred eccCCCcEEE-EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEE----Eec--CCCEEEEEECCCeEEEEE
Q 008393 368 FMGHSASVMS-LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMR----FQP--HLGRYLAAAAENVVSILD 440 (567)
Q Consensus 368 ~~~h~~~V~~-l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~--~~~~l~~~~~dg~I~i~d 440 (567)
.... ..+.+ ..+. +.. ++.+..++.|..+|.++++.+..+......+. .+| .++.++++..++.+..+|
T Consensus 146 ~~~~-~~~~ssP~v~--~~~-v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d 221 (394)
T PRK11138 146 TKVA-GEALSRPVVS--DGL-VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL 221 (394)
T ss_pred ccCC-CceecCCEEE--CCE-EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence 3322 22222 2222 233 44677799999999999999887764321110 011 245788888899999999
Q ss_pred CCCCeEEEEecCCCC-------CeeEEEEcC--CCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 441 AETQACRLSLQGHTK-------PIDSVCWDP--SGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~-------~V~~l~~sp--~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
..+++.+........ ....+..+| .+..++.++.+ .+..+|..+++ .+...... ....+. ..+
T Consensus 222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~--~~~~~~--~~~ 294 (394)
T PRK11138 222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ---IVWKREYG--SVNDFA--VDG 294 (394)
T ss_pred ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC---EEEeecCC--CccCcE--EEC
Confidence 999987766532110 011111122 23455566666 99999998873 33322211 111122 246
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEE-eccc-cCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMT-LTAH-EGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~-~~~h-~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..|++++.++.|+.+|..+++.+- .... .....+..+ .+.+|+.++.||.|.+.|
T Consensus 295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWIN 351 (394)
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEE
Confidence 678899999999999999987652 2111 111222222 245677777888776543
No 300
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=4e-06 Score=78.28 Aligned_cols=224 Identities=19% Similarity=0.184 Sum_probs=132.2
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCC--eeeee---ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 293 CHFSSDGKLLATGGHDKKAVLWHTDTL--KSKTN---LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 293 l~~s~dg~~lasg~~dg~I~vwd~~~~--~~~~~---l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
++.+.||++||.- .|..|.|=..++. ..+.. -+...-.=+.++|+||+..||.+...|+|++||+.. .. +..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~-lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SE-LFV 79 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc-ce-eEE
Confidence 5678899998876 4666766554321 11122 222333456899999999999999999999999984 22 222
Q ss_pred ecc-------CCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEECCCC-----eeeEEE------eCCeeEEEEecCC
Q 008393 368 FMG-------HSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSINNG-----SCTRVF------KGGTAQMRFQPHL 424 (567)
Q Consensus 368 ~~~-------h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~~~~-----~~~~~~------~~~~~~~~~~~~~ 424 (567)
+.. -...|..+.|.... ...++.-..+|.++-|-+..+ .....| ..++..+.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 23567777775432 223445667888888876332 222332 3478899999998
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEc---CCCCEEEEEeCCe-------EEEEeCCCCCCCceEEEe
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWD---PSGELLASVSEDS-------VRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~s---p~g~~l~s~s~d~-------I~iwd~~~~~~~~~i~~~ 494 (567)
..|++++....= ++. -+.....+++-.+- |..+.+ +..++. ..+|.+-+. ......
T Consensus 160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~---~~fs~~ 225 (282)
T PF15492_consen 160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQV-TSSEDDITASSKRRGLLRIPSF---KFFSRQ 225 (282)
T ss_pred CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEc-cccCccccccccccceeeccce---eeeecc
Confidence 888888764320 000 00011122221111 111111 112111 123333211 122222
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
......|..+.++|||..|++...+|.|.+|++..-+..
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 335678999999999999999999999999999876544
No 301
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.84 E-value=1.8e-08 Score=97.35 Aligned_cols=123 Identities=20% Similarity=0.245 Sum_probs=90.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...|..+..+......-.++....+.+|....+... .+-+|-..+++|+|+||++.|+++..|+.|+|-........-.
T Consensus 110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies 188 (390)
T KOG3914|consen 110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES 188 (390)
T ss_pred cceeeeeeccceEEEEeecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh
Confidence 333444444433333333455566667766654333 3447999999999999999999999999999988876333334
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
..-||+..|..++..++ +++++++.|++|++||+.+++++..+.
T Consensus 189 fclGH~eFVS~isl~~~--~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 189 FCLGHKEFVSTISLTDN--YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred hccccHhheeeeeeccC--ceeeecCCCCcEEEEecccCCcccccc
Confidence 45689999999999876 356699999999999999999987654
No 302
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=1.9e-09 Score=112.68 Aligned_cols=202 Identities=16% Similarity=0.292 Sum_probs=150.2
Q ss_pred CCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-
Q 008393 317 DTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG- 395 (567)
Q Consensus 317 ~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg- 395 (567)
..++...+++.|....+|++|+-+.+.|+.|+..|.|++|++.+ +.....+.+|...|+-+.-+.+|..++.+.+...
T Consensus 1089 SRFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1089 SRFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred hhcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-ccccccccccccccccccccCCcceeeeeccccCc
Confidence 35677788889999999999999999999999999999999998 6667788899999999999999988886666555
Q ss_pred cEEEEECCC-CeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe-cC---CCCCeeEEEEcCCCCEEE
Q 008393 396 EIRYWSINN-GSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL-QG---HTKPIDSVCWDPSGELLA 470 (567)
Q Consensus 396 ~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-~~---h~~~V~~l~~sp~g~~l~ 470 (567)
...+|++.+ +...+.| .+..++.|+.....-++++......+||+.++.+..++ .+ ....-++..|+|+.++++
T Consensus 1168 lsaLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1168 LSALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hHHHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 578999876 2333333 34567778777666677777789999999998766553 22 122336788999988776
Q ss_pred EEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 471 SVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 471 s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
--+ .+||++.. ..|+.+.... ....-.|+|.|..++.-+ .|||+++.+.+
T Consensus 1247 ndG----vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1247 NDG----VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred eCc----eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence 432 58999865 4444433222 112227999999887754 58999887654
No 303
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.76 E-value=2.4e-06 Score=81.76 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=130.3
Q ss_pred CCcEEEEEcCCCCceeEEecc-C-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe--eEEEEecCCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG-H-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT--AQMRFQPHLG 425 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~-h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~~~~~ 425 (567)
+|.|..||..+ ++.+-...- . .....+..+ +++..++ +++.++.|..||..+++.+..+.... ... ....++
T Consensus 2 ~g~l~~~d~~t-G~~~W~~~~~~~~~~~~~~~~-~~~~~v~-~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRT-GKELWSYDLGPGIGGPVATAV-PDGGRVY-VASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGG 77 (238)
T ss_dssp TSEEEEEETTT-TEEEEEEECSSSCSSEEETEE-EETTEEE-EEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETT
T ss_pred CCEEEEEECCC-CCEEEEEECCCCCCCccceEE-EeCCEEE-EEcCCCEEEEEECCCCCEEEEeeccccccce-eeeccc
Confidence 68899999987 444443332 1 122222222 2345455 66789999999999999887776421 111 244568
Q ss_pred EEEEEECCCeEEEEECCCCeEEEEe-cCCCC---CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 426 RYLAAAAENVVSILDAETQACRLSL-QGHTK---PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 426 ~l~~~~~dg~I~i~d~~~~~~~~~~-~~h~~---~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
.+++++.++.|+.+|.++++.+... ..... ....+....++..++.+..+ .|..+|+++| +.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~ 154 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPR 154 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCC
Confidence 8888889999999999999999884 43211 11222233337778888866 9999999888 555555443322
Q ss_pred ----------eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 501 ----------FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 501 ----------i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+..-.+..++ .++++..++.+..+|+.+++..- ......+..+ ...++..|+.++.|+.|..||
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 1122222344 78888888854444999998662 2223333332 346777888888899998886
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.72 E-value=1.9e-07 Score=85.14 Aligned_cols=165 Identities=13% Similarity=0.150 Sum_probs=108.1
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeC-----CC
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSF-----DK 351 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-----dg 351 (567)
...+.+..|+++-.+-+.+--++.+++++.||.+.+++.+.. .....+..-...-.+.++...++.|.++.. -+
T Consensus 80 ~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 80 DPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQD 159 (319)
T ss_pred CceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeecc
Confidence 344555677777777777777889999999999999998752 111222211111122233334444444321 23
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee----EEEeCCeeEEEEecCC-CE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT----RVFKGGTAQMRFQPHL-GR 426 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~-~~ 426 (567)
..++|+++..+..+.... ....|.+++-+|.-.+++++|+.||.+.+||.+..... +..+.++..+.|+|.. ..
T Consensus 160 ~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred ceeeeccccccccccccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 467788775332222222 23349999999999999999999999999999987432 2345567778888854 56
Q ss_pred EEEEECCCeEEEEECCC
Q 008393 427 YLAAAAENVVSILDAET 443 (567)
Q Consensus 427 l~~~~~dg~I~i~d~~~ 443 (567)
|++++.||.+.-||..+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 88888899999888765
No 305
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.4e-07 Score=85.84 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred cceeeeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCC-eEEEEeCCCcE
Q 008393 276 SFKEANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMP-RLATSSFDKTV 353 (567)
Q Consensus 276 ~~~~~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~-~l~s~s~dg~I 353 (567)
+|+....+.+|...|..++|||..+ ++..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +|+.|...|.|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~V 260 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMV 260 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceE
Confidence 3445567889999999999999877 7888999999999999999999999888 7899999987654 77888889999
Q ss_pred EEEEcCCCCceeEEecc--CCCcEEEEEEcC------CCCeEEEEEeCCCcEEEEECCCC----eeeEEEeCC--eeEEE
Q 008393 354 RVWDADNPGYSLRTFMG--HSASVMSLDFHP------NKDDLICSCDGDGEIRYWSINNG----SCTRVFKGG--TAQMR 419 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p------~~~~li~s~~~dg~I~iwd~~~~----~~~~~~~~~--~~~~~ 419 (567)
.|||++.....+..+.+ ...+|..++.-+ .+. +++.... .+..|++.-. .++..+..+ ...+.
T Consensus 261 lvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg-lLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismq 337 (463)
T KOG1645|consen 261 LVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG-LLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQ 337 (463)
T ss_pred EEEEccCCCchHhhhhhhhccCcceeecccCccccccccc-eEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeee
Confidence 99999876554444433 234455554432 222 3322222 3556655432 222333322 33344
Q ss_pred EecCCCEEEEEECCC--------eEEEEECCCCeEEEEec-CC-CCC------eeEEEEcCCCCEEEEEeCC--eEEEEe
Q 008393 420 FQPHLGRYLAAAAEN--------VVSILDAETQACRLSLQ-GH-TKP------IDSVCWDPSGELLASVSED--SVRVWT 481 (567)
Q Consensus 420 ~~~~~~~l~~~~~dg--------~I~i~d~~~~~~~~~~~-~h-~~~------V~~l~~sp~g~~l~s~s~d--~I~iwd 481 (567)
+.+..+.+++....+ .+.-.|..+|..+...+ ++ ... -..+.-.++.++|+..+++ .+.+||
T Consensus 338 y~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D 417 (463)
T KOG1645|consen 338 YHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQD 417 (463)
T ss_pred ecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEec
Confidence 555556666666531 11122333443332221 11 010 0112223466777776666 899999
Q ss_pred CCCCCCCceEEEeecCCCceEEEEE-eCCCCeEEEEEcCCeEEEEECC
Q 008393 482 VGSGSEGECVHELSCNGNKFHSCVF-HPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 482 ~~~~~~~~~i~~~~~~~~~i~~~~~-sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
..+. ..+.++... .++..++. .-++.-++..-.|..+.||..+
T Consensus 418 ~~s~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 418 PHSF---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cchh---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence 9877 556666554 56666553 4455555555666778887654
No 306
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.70 E-value=7.7e-07 Score=94.20 Aligned_cols=174 Identities=16% Similarity=0.183 Sum_probs=128.5
Q ss_pred EEEEeCCCcEEEEECCCCeeeEEEeCCe-eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC
Q 008393 388 ICSCDGDGEIRYWSINNGSCTRVFKGGT-AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG 466 (567)
Q Consensus 388 i~s~~~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g 466 (567)
++.|+.-..+..+|+++.+..+...-.. .+..+..++..+++|...|+|.+-|.++.+.++++..|.+.|..+. -.|
T Consensus 150 ~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~G 227 (1118)
T KOG1275|consen 150 LIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQG 227 (1118)
T ss_pred eeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccC
Confidence 4467777789999999988877665433 2333444557788888899999999999999999999999997654 568
Q ss_pred CEEEEEeC---------C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC-CeEEEEEcCCeEEEEE---CCCCcE
Q 008393 467 ELLASVSE---------D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY-PSLLVIGCYQSLELWN---MSENKT 532 (567)
Q Consensus 467 ~~l~s~s~---------d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~-~~l~~~~~dg~I~iwd---~~~~~~ 532 (567)
++|++|+. | .|+|||+++......+. .+.++ .-+.|+|.. ..+++++..|...+-| +.+...
T Consensus 228 NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~---~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~ 303 (1118)
T KOG1275|consen 228 NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQ---FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPA 303 (1118)
T ss_pred CeEEEeecccccccccccchhhhhhhhhhhccCCcc---cccCc-hhhhhcccccceEEEEecccceeeccccccCCCcc
Confidence 88998874 4 58999998764333332 22222 345778864 4688888899999998 443322
Q ss_pred E--EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 533 M--TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 533 ~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
- .+......+.++++++++..+|.|..+|.|.+|.
T Consensus 304 ~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 304 GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 2 2333344599999999999999999999999993
No 307
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.66 E-value=9.5e-06 Score=75.78 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=109.9
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-------cCccEEEEEECCCC------CeEEEEeCCCcEEEEE
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-------HSSLITDVRFSPSM------PRLATSSFDKTVRVWD 357 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-------h~~~V~~i~fsp~~------~~l~s~s~dg~I~iwd 357 (567)
.-++||||+.+||.+...|+|++||+.. ..+..+.. -...|..+.|.+.. ..|++-..+|.++-|-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 3689999999999999999999999864 33334332 23567778785532 2577778888888877
Q ss_pred cCC----CCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEE--E
Q 008393 358 ADN----PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRY--L 428 (567)
Q Consensus 358 ~~~----~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l--~ 428 (567)
+.. +......+. .+...|.++.|+|..+.|++.|.....-..+. ....+.++-++-.+..+. +
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------ASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcccc--------ccccCceEEEEcCCCCcEEEc
Confidence 632 112222222 34678999999998766665554433211110 011111111111111111 1
Q ss_pred EEECCC------eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC
Q 008393 429 AAAAEN------VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG 485 (567)
Q Consensus 429 ~~~~dg------~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~ 485 (567)
....++ ...++.+-+.+...........|..|..+|||.+||+.... .|.+|++.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 111111 11233333222222222346789999999999999999988 9999999765
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.64 E-value=8.6e-07 Score=85.89 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee----eeeecccCccEEEEEECCCCCeEEEE---eCCCcEEEEEcCCCC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKS----KTNLEEHSSLITDVRFSPSMPRLATS---SFDKTVRVWDADNPG 362 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~----~~~l~~h~~~V~~i~fsp~~~~l~s~---s~dg~I~iwd~~~~~ 362 (567)
+..+.+++++++||++..++...++++..... ..... -...-+++.|..+...+..+ ++...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 34566788888999888888877777653322 22221 12223444454444444444 4445555666554
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
.....+-||-..++.++|+||+. +|++++.|..|++-.......+..|- ..+..++..++ ..|+.++.|++|++
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~ 219 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL 219 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence 34456678999999999999975 55599999999998877666555543 23455666655 45899999999999
Q ss_pred EECCCCeEEEEec
Q 008393 439 LDAETQACRLSLQ 451 (567)
Q Consensus 439 ~d~~~~~~~~~~~ 451 (567)
||+++++.+.++.
T Consensus 220 Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 220 WDITSGKLLDTCD 232 (390)
T ss_pred EecccCCcccccc
Confidence 9999998886654
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=89.70 Aligned_cols=168 Identities=17% Similarity=0.255 Sum_probs=124.6
Q ss_pred EEEEcCC--CCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC----Ccee
Q 008393 292 CCHFSSD--GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP----GYSL 365 (567)
Q Consensus 292 ~l~~s~d--g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~----~~~~ 365 (567)
.|+|+-+ |-. ++.|.+-.|-+-|++++-.-. +. ....|.++.|.-.+++++.|+..|.|..+|++.. +.+.
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a 292 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA 292 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence 3466542 223 445567788888888764332 22 5567899999998999999999999999999864 4555
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee---eEEEeCCeeEEE-----EecCCCEEEEEECCCeEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC---TRVFKGGTAQMR-----FQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~---~~~~~~~~~~~~-----~~~~~~~l~~~~~dg~I~ 437 (567)
..+. |...|+++.........+++.+-+|+|++||++.-++ +..+.++++..+ +.+..+.+++++.|...+
T Consensus 293 ~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR 371 (425)
T KOG2695|consen 293 QRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR 371 (425)
T ss_pred EEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence 5554 8999999987763334455778899999999998777 888888876544 566778899999999999
Q ss_pred EEECCCCeEEEEecCCC----CCeeEEEEc
Q 008393 438 ILDAETQACRLSLQGHT----KPIDSVCWD 463 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~----~~V~~l~~s 463 (567)
||.++.+..+.++.-.. ..+.+++|.
T Consensus 372 iWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 372 IWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEecccCceeeccCCCCccccccccceehh
Confidence 99999998887766432 234455554
No 310
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.62 E-value=4e-05 Score=78.04 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=150.9
Q ss_pred cCCCCeEEEEe---------CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 296 SSDGKLLATGG---------HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 296 s~dg~~lasg~---------~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
|||+++++... ..+.+.|||+++++....... ...+....|+|+|+.|+... ++.|.+++..++.....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence 67888877642 346799999999766555444 66788999999999998886 46799998876322212
Q ss_pred EeccC----------------CCcEEEEEEcCCCCeEEEEEeCCCcEEEE------------------------------
Q 008393 367 TFMGH----------------SASVMSLDFHPNKDDLICSCDGDGEIRYW------------------------------ 400 (567)
Q Consensus 367 ~~~~h----------------~~~V~~l~~~p~~~~li~s~~~dg~I~iw------------------------------ 400 (567)
+..+. -+.-..+-|+||++++++.--.+..|..+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v 158 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV 158 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence 22220 11235678999999888765555544444
Q ss_pred -----ECCCCeeeEEE-e-------CCeeEEEEecCCCEEEEEECC-----CeEEEEECCCCeEEEEecC-CCCCe---e
Q 008393 401 -----SINNGSCTRVF-K-------GGTAQMRFQPHLGRYLAAAAE-----NVVSILDAETQACRLSLQG-HTKPI---D 458 (567)
Q Consensus 401 -----d~~~~~~~~~~-~-------~~~~~~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~~~~~-h~~~V---~ 458 (567)
|+.+++....- . .-...+.|.+++..+++.-.+ ..+.++|..++++...+.. ....| .
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 33333221110 0 013456788887755555442 2677788877644333322 22332 3
Q ss_pred EEEEc-CCCCEEE-EEeCC---eEEEEeCCCCCCCceEEEeecCCCceEE-EEEeCCCCeEEEEEcC-----CeEEEEEC
Q 008393 459 SVCWD-PSGELLA-SVSED---SVRVWTVGSGSEGECVHELSCNGNKFHS-CVFHPTYPSLLVIGCY-----QSLELWNM 527 (567)
Q Consensus 459 ~l~~s-p~g~~l~-s~s~d---~I~iwd~~~~~~~~~i~~~~~~~~~i~~-~~~sp~~~~l~~~~~d-----g~I~iwd~ 527 (567)
.+.|. +++..++ ....+ .|.+++...+ ....+....-.|.. +.++++++.|+..+.. ..|+..++
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 56665 6655444 33343 5777777654 23455545555644 6788988877765553 26788888
Q ss_pred C-CCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 528 S-ENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 528 ~-~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. .+....+....+....+.|||++++++-..
T Consensus 315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence 8 666666655444446999999999877543
No 311
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.62 E-value=1.3e-05 Score=84.15 Aligned_cols=255 Identities=14% Similarity=0.092 Sum_probs=147.9
Q ss_pred CCCCeEEEEeC-CCcEEEEeCCCCeeeeeecc-cCccEEEEEEC--CCCCeEEEEe------------------CCCcEE
Q 008393 297 SDGKLLATGGH-DKKAVLWHTDTLKSKTNLEE-HSSLITDVRFS--PSMPRLATSS------------------FDKTVR 354 (567)
Q Consensus 297 ~dg~~lasg~~-dg~I~vwd~~~~~~~~~l~~-h~~~V~~i~fs--p~~~~l~s~s------------------~dg~I~ 354 (567)
.||+||+.-.. ...|-..+++.+++...+.- ....+..++|- |+..|++.++ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888887653 56677777777766555441 12223333332 3333433332 234566
Q ss_pred EEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe--C-CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEE
Q 008393 355 VWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD--G-DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~--~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (567)
+.|.++ .+....+.- .+....++++++++++++++. + ..++...+..+...+..|.-.. ...+.++++...+
T Consensus 219 vID~et-meV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-iea~vkdGK~~~V-- 293 (635)
T PRK02888 219 AVDAET-MEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-IEEAVKAGKFKTI-- 293 (635)
T ss_pred EEECcc-ceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH-HHHhhhCCCEEEE--
Confidence 666665 333333221 224456788899888776652 1 2334444443333222222110 1123445665554
Q ss_pred CCCeEEEEECCC-----CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCC---------CceEEEee
Q 008393 432 AENVVSILDAET-----QACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSE---------GECVHELS 495 (567)
Q Consensus 432 ~dg~I~i~d~~~-----~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~---------~~~i~~~~ 495 (567)
.++.|.++|.++ .+.+..+. -......+.++|||+++++++.- +|.|+|+.+.+. ...+.+..
T Consensus 294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 467899999998 34444444 34567889999999999988865 899999987532 11233333
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC----------CcEE-EeccccCCee-----EEEEecCCCEEEEEE
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE----------NKTM-TLTAHEGLIA-----ALAVSTETGYVASAS 558 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~----------~~~~-~~~~h~~~V~-----~l~~spdg~~l~s~s 558 (567)
. +..-...+|.++|....+..-|..|..||+.+ ...+ .+.-|-.+.. .=.-.+||++|++..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 3 33344568999998888888899999999876 2222 2333322221 112368899988764
No 312
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.5e-07 Score=88.77 Aligned_cols=202 Identities=14% Similarity=0.164 Sum_probs=144.0
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC--CCceeEEeccCCCcEEEEEEcCCCCeEEEEEeC-CCcEEEEECCC
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADN--PGYSLRTFMGHSASVMSLDFHPNKDDLICSCDG-DGEIRYWSINN 404 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~-dg~I~iwd~~~ 404 (567)
|.+.|+.+.-. ..+++++++.||.++.|.-.. .-..+..+..|.+.|.+++.+-++ .+++|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEeec
Confidence 67777776544 456999999999999998653 223455667788999999998885 57778676 99999999988
Q ss_pred CeeeEEEeC--CeeEEEEecCCC----EEEEEE-CCCeEEEEECCCCe--EEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 405 GSCTRVFKG--GTAQMRFQPHLG----RYLAAA-AENVVSILDAETQA--CRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 405 ~~~~~~~~~--~~~~~~~~~~~~----~l~~~~-~dg~I~i~d~~~~~--~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
-..+..++- -...+.|....+ .+++.. .++.+.++|-.... ....-.-|..+|.++.+.+.+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 765533332 122233322222 333333 37899999987653 334445599999999999999999888877
Q ss_pred -eEEEEeCCC-CCC-----------CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc
Q 008393 476 -SVRVWTVGS-GSE-----------GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK 531 (567)
Q Consensus 476 -~I~iwd~~~-~~~-----------~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~ 531 (567)
.|.-|.... ... ...+..+.-......++.|+|++..+.+.+.|..|+++++++++
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 899999863 100 01122233345567889999999999999999999999999887
No 313
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.60 E-value=2.9e-07 Score=84.02 Aligned_cols=110 Identities=20% Similarity=0.405 Sum_probs=79.2
Q ss_pred EcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCCCceeEEe
Q 008393 295 FSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSM-PRLATSSFDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 295 ~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~~~~~~~~ 368 (567)
+...++++.+++. -+..++|+++..+....-..-...|.+++-+|.. ..+++|+.||.+-+||.++...+...+
T Consensus 140 ~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l 219 (319)
T KOG4714|consen 140 ICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL 219 (319)
T ss_pred eeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH
Confidence 3334555554431 2344556554333222222233448999998864 467888899999999999877777888
Q ss_pred ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 369 MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 369 ~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
..|+.++..+-|+|....-++++++||.+..||..+
T Consensus 220 ~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 220 KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 999999999999998777777999999999999875
No 314
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=6.3e-05 Score=69.19 Aligned_cols=255 Identities=14% Similarity=0.108 Sum_probs=137.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
-|++++.|...|.+++.++++|.....+......-......+++..|..|+.|++.+..|..+ ..++...+...+...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~-~~cVykskcgG~~f~s 140 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT-YGCVYKSKCGGGTFVS 140 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc-cceEEecccCCceecc
Confidence 367899999999999999999988777664433223344567888999999999999999998 5555555543343344
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE--Ee--CCe--eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV--FK--GGT--AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~--~~--~~~--~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
-+..+-...++ .+...|.|.--..+....... +. +++ ..++. +..+..++-||.+.-+| ..++.++.+.
T Consensus 141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~ 215 (354)
T KOG4649|consen 141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA 215 (354)
T ss_pred ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence 45555333344 334455555555554421111 11 111 11111 24455666677777777 5556665544
Q ss_pred CCCCCeeE-EEEc-CCCCEEEEEeCC---------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeC----CCCeEEEE
Q 008393 452 GHTKPIDS-VCWD-PSGELLASVSED---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHP----TYPSLLVI 516 (567)
Q Consensus 452 ~h~~~V~~-l~~s-p~g~~l~s~s~d---------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp----~~~~l~~~ 516 (567)
. .++|.. -+-+ |....|..+.++ .-.+|...++ ...+...... ....++. ..++|..+
T Consensus 216 t-~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~ 288 (354)
T KOG4649|consen 216 T-KGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS 288 (354)
T ss_pred C-CCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence 2 233321 1122 333444444444 2345655544 1111111110 0112211 13456778
Q ss_pred EcCCeEEEEECCCCcEEEeccccCCeeEE---E-----E-ec---CCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTMTLTAHEGLIAAL---A-----V-ST---ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~~~~~h~~~V~~l---~-----~-sp---dg~~l~s~s~Dg~I~iWd 567 (567)
+.||++.|.-.+.. ......|.+.+..+ . | +| +| +|+.|+.|..|+-||
T Consensus 289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~g-rl~igcRDdYv~cld 349 (354)
T KOG4649|consen 289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDG-RLLIGCRDDYVRCLD 349 (354)
T ss_pred cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEcc-EEEEEEccCeEEEEe
Confidence 88999888844322 11222333222221 1 1 22 44 577788898999886
No 315
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.60 E-value=1.4e-05 Score=87.74 Aligned_cols=240 Identities=13% Similarity=0.159 Sum_probs=150.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
.+.|.++.|.-++.-++.+..+|.|.+-|.++.... ....-...|.++.|+||+..++..+.++++.+-+-. -.++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~--f~~i~ 144 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKD--FEPIA 144 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEecc--ccchh
Confidence 368999999999999999999999999988765432 223345679999999999999999988887765432 11111
Q ss_pred --Ee---ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee---EEEeCCeeEEEEecCCCEEEEEEC----C-
Q 008393 367 --TF---MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT---RVFKGGTAQMRFQPHLGRYLAAAA----E- 433 (567)
Q Consensus 367 --~~---~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~----d- 433 (567)
.+ ....+....+-|-.....+ -|+ .|.....+....+.. .....+...+.|--+|.++++... +
T Consensus 145 E~~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 145 EKPLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred ccccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 11 0111222334443322111 111 222222221111111 013345677889999888877432 3
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC---C-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE---D-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~---d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
..|++||.+ +..-..-....+--.+++|-|.|.++++... + .|.+|.-+..........+......+..++|+.+
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~ 300 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN 300 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCC
Confidence 799999988 4322222222344568999999999998753 3 6999987654444444445555555899999999
Q ss_pred CCeEEE---EEcCCeEEEEECCCCcEE
Q 008393 510 YPSLLV---IGCYQSLELWNMSENKTM 533 (567)
Q Consensus 510 ~~~l~~---~~~dg~I~iwd~~~~~~~ 533 (567)
+..|++ ......|++|-+.+...+
T Consensus 301 sdiLAv~~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 301 SDILAVVTSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred CCceeeeecccccceEEEEEecCeEEE
Confidence 998888 344446999998876644
No 316
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.60 E-value=3.5e-05 Score=81.96 Aligned_cols=254 Identities=13% Similarity=0.123 Sum_probs=149.4
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc------EE--EEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL------IT--DVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~------V~--~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
+..+++++.++.|..+|..+++.+..+...... +. .+.+. ++..++.++.++.|+.+|.++ ++.+-.+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~T-G~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAET-GKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCC-CCEeeeecC
Confidence 346667777899999999999988776543320 10 11111 225888888999999999998 444433332
Q ss_pred CCCc-----EE-EEEEcCCCCeEEEEEe---------CCCcEEEEECCCCeeeEEEeCCe--------------------
Q 008393 371 HSAS-----VM-SLDFHPNKDDLICSCD---------GDGEIRYWSINNGSCTRVFKGGT-------------------- 415 (567)
Q Consensus 371 h~~~-----V~-~l~~~p~~~~li~s~~---------~dg~I~iwd~~~~~~~~~~~~~~-------------------- 415 (567)
.... +. ...+.. ..++ .++ .++.|..+|..+++.+..+....
T Consensus 139 ~~~~~~~~~i~ssP~v~~--~~v~-vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g 215 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK--KLVI-IGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG 215 (488)
T ss_pred CCCcCcceEecCCCEEEC--CEEE-EeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence 2110 11 122221 2333 443 46889999999999887765321
Q ss_pred ----eEEEEecCCCEEEEEECCC------------------eEEEEECCCCeEEEEecCCCCCee------EEEEc----
Q 008393 416 ----AQMRFQPHLGRYLAAAAEN------------------VVSILDAETQACRLSLQGHTKPID------SVCWD---- 463 (567)
Q Consensus 416 ----~~~~~~~~~~~l~~~~~dg------------------~I~i~d~~~~~~~~~~~~h~~~V~------~l~~s---- 463 (567)
....+.+.++.+++++.++ .|.-+|.++++.+..+..-...+. ...+.
T Consensus 216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~ 295 (488)
T cd00216 216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP 295 (488)
T ss_pred CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence 1234455667888887665 799999999999988753111110 01111
Q ss_pred CCCC---EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE------------------EcCCe
Q 008393 464 PSGE---LLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI------------------GCYQS 521 (567)
Q Consensus 464 p~g~---~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~------------------~~dg~ 521 (567)
-+|. +++.++.+ .+..+|.++++ .+...... ...++.+| ..++++ ..+|.
T Consensus 296 ~~g~~~~~V~~g~~~G~l~ald~~tG~---~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 296 KDGKPVPAIVHAPKNGFFYVLDRTTGK---LISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred cCCCeeEEEEEECCCceEEEEECCCCc---EeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 2343 56677777 89999999884 34333211 11123333 333332 23578
Q ss_pred EEEEECCCCcEE-Eeccc--c------CCe--eEEEEecCCCEEEEEECCCcEEEcC
Q 008393 522 LELWNMSENKTM-TLTAH--E------GLI--AALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 522 I~iwd~~~~~~~-~~~~h--~------~~V--~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
|.-+|+.+++.+ ..... . .+. ..+. -.+.+|+.++.||.|+.+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEE
Confidence 999999999877 22211 0 111 1222 2456788888888887654
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.59 E-value=1.5e-05 Score=82.35 Aligned_cols=221 Identities=12% Similarity=0.133 Sum_probs=123.2
Q ss_pred cCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee
Q 008393 328 HSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC 407 (567)
Q Consensus 328 h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~ 407 (567)
..-....+.++|+|+++++ +.||...||.... ... .. .+.-...+|...+. +++-...+.|.|+.--+.+.
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~-~r~-k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~~ 101 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALA-WRN-KA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNEV 101 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTT-TEE-EE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-T
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccC-Ccc-cc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCcccc
Confidence 4445788999999999888 5567777887443 221 11 23345678887543 44666688899974333333
Q ss_pred eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCC--
Q 008393 408 TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSG-- 485 (567)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~-- 485 (567)
.+.++.+...-.+.. +.++....++.|.+||..+++.+..+... +|..+.|+++|++++..+.+.+.|++....
T Consensus 102 ~k~i~~~~~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 102 VKSIKLPFSVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp T-----SS-EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred ceEEcCCcccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 334444432222222 55555556669999999999999998743 489999999999999999987777765421
Q ss_pred ------CCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEEC
Q 008393 486 ------SEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 486 ------~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~ 559 (567)
.....+..+......|.+.+|..+ .++..+.. .|+. +..|+...+..-..++.=+.+.+..+.|.....
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~Dr 252 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLIDR 252 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-T
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEEC
Confidence 001134444433677888899877 34444444 6666 556666666555667777888887778888888
Q ss_pred CCcEEEc
Q 008393 560 DKFVKLW 566 (567)
Q Consensus 560 Dg~I~iW 566 (567)
|+.|..+
T Consensus 253 ~~~v~~~ 259 (443)
T PF04053_consen 253 DGNVISY 259 (443)
T ss_dssp T--EEEE
T ss_pred CCCEEEE
Confidence 8877654
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.56 E-value=2.2e-07 Score=61.18 Aligned_cols=38 Identities=29% Similarity=0.543 Sum_probs=36.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEe
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd 315 (567)
+.+..+++|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999999999999999999999997
No 319
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.53 E-value=0.00027 Score=70.29 Aligned_cols=265 Identities=13% Similarity=0.117 Sum_probs=136.6
Q ss_pred EEcCCCCeEEEEeC-CC--cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc
Q 008393 294 HFSSDGKLLATGGH-DK--KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG 370 (567)
Q Consensus 294 ~~s~dg~~lasg~~-dg--~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 370 (567)
+|..||+.|+.++. || .+.+.|+.+++...--.+.........++++.+.|+-......|+..|+++ .+....+..
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~~ 120 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYEV 120 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE-
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEEC
Confidence 57889976666554 44 577778888876665544323333566778888887766667899999998 444445555
Q ss_pred CCCcEEEEEEc--CCCCeEEEEEe----------------------CCCcEEEEECCCCeeeEEEeCC--eeEEEEecCC
Q 008393 371 HSASVMSLDFH--PNKDDLICSCD----------------------GDGEIRYWSINNGSCTRVFKGG--TAQMRFQPHL 424 (567)
Q Consensus 371 h~~~V~~l~~~--p~~~~li~s~~----------------------~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~~~ 424 (567)
....+-...|. .++.. ++..- -.+.|...|+.+++....+... ...+.|+|..
T Consensus 121 p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp -TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred CcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence 55555555553 33333 32211 1235667788888776666544 4778899998
Q ss_pred CEEEEEECCC-------eEEEEECCCCeEEEEecCCCC--CeeEEEEcCCCCEEEEEe-----CC-eEEEEeCCCCCCCc
Q 008393 425 GRYLAAAAEN-------VVSILDAETQACRLSLQGHTK--PIDSVCWDPSGELLASVS-----ED-SVRVWTVGSGSEGE 489 (567)
Q Consensus 425 ~~l~~~~~dg-------~I~i~d~~~~~~~~~~~~h~~--~V~~l~~sp~g~~l~s~s-----~d-~I~iwd~~~~~~~~ 489 (567)
..+++-+.+| .|.+.+.... ....+..+.. .+..=-|.+||..|..-+ .+ .|.-+|+.++.. .
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~~dg~-~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~ 277 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTINTDGS-NVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-R 277 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-E
T ss_pred CCEEEEeccCCcceeceEEEEEEcCCC-cceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-e
Confidence 8888877643 4444454333 3333333322 234446899998766543 24 577788877633 2
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCC----------------eEEEEECCCCcEEEeccccC-----------Ce
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ----------------SLELWNMSENKTMTLTAHEG-----------LI 542 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg----------------~I~iwd~~~~~~~~~~~h~~-----------~V 542 (567)
.+... .....+-.++||++++-=+.|. -|+++++..+....+..|.. .=
T Consensus 278 ~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~h 353 (386)
T PF14583_consen 278 RLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTH 353 (386)
T ss_dssp EEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT-
T ss_pred EEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCC
Confidence 22222 2344556678888554433331 57788888877654433321 12
Q ss_pred eEEEEecCCCEEEEEE-CCCcEEEc
Q 008393 543 AALAVSTETGYVASAS-HDKFVKLW 566 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s-~Dg~I~iW 566 (567)
-.+.|+||+++|+..+ ..|...||
T Consensus 354 Php~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp ---EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCccCCCCCEEEEECCCCCCccEE
Confidence 3578999999876555 46766554
No 320
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.51 E-value=1.9e-05 Score=82.03 Aligned_cols=271 Identities=11% Similarity=0.099 Sum_probs=153.2
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
|...|.--+++..+++++.|+..|.+++|+-..++....-. +-...+..+..+++..++|.|+..|.|.++-+......
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 34455556777788999999999999999987665443322 34455666778888888999999999999988753221
Q ss_pred eE-----EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-----eeEEEeCCeeEEEEecCCCEEEEEECCC
Q 008393 365 LR-----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-----CTRVFKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 365 ~~-----~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
-. .-..|...|++++|++++..++ +|..-|.|..-.+.... ....+......+.++.-..++++++.-.
T Consensus 112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k~y-sGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 112 DLDYVTPCDKSHKCRVTALEWSKNGMKLY-SGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred cceeeccccccCCceEEEEEecccccEEe-ecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 11 1124788999999999988766 99999999998887721 1112222223333444445555554433
Q ss_pred eEEEEECCCCeE--EEEecCCCC-CeeEEEEcCC----CCEEEEEeCCeEEEEeCCCCCCCceEEEeecC----------
Q 008393 435 VVSILDAETQAC--RLSLQGHTK-PIDSVCWDPS----GELLASVSEDSVRVWTVGSGSEGECVHELSCN---------- 497 (567)
Q Consensus 435 ~I~i~d~~~~~~--~~~~~~h~~-~V~~l~~sp~----g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~---------- 497 (567)
.+ +++.+.+.. +-+-. .++ .-...||-|. .+-.+.++.-..|+|..+-.. ..+.+....
T Consensus 191 ~~-Lc~tE~eti~QIG~k~-R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 191 CI-LCQTEAETITQIGKKP-RKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPE 266 (726)
T ss_pred hh-eeecchhHHHHhcCCC-cCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCc
Confidence 32 333332221 11100 111 1234566554 233333444357788765221 111111100
Q ss_pred ---C----------------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 498 ---G----------------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 498 ---~----------------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
. -....+.+- .+..+++-+.-| |||+|..+...+........|..++. +++-|+.--
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~--~~neiFvL~ 342 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSDRVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSH--CGNEIFVLN 342 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEe-ecceEEEeecce-EEEEEeccceEEEeecCCCceeEEee--cCceEEEEe
Confidence 0 001111111 122344444444 99999988877766545555666654 345555555
Q ss_pred CCCcEEE
Q 008393 559 HDKFVKL 565 (567)
Q Consensus 559 ~Dg~I~i 565 (567)
.|+.+++
T Consensus 343 ~d~~l~~ 349 (726)
T KOG3621|consen 343 LDRGLKV 349 (726)
T ss_pred cCCceeE
Confidence 6665543
No 321
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.50 E-value=3.5e-07 Score=60.20 Aligned_cols=39 Identities=41% Similarity=0.557 Sum_probs=37.0
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=3.7e-05 Score=81.50 Aligned_cols=203 Identities=14% Similarity=0.256 Sum_probs=136.1
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCC-----
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNG----- 405 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~----- 405 (567)
+|++.+..++.|+.+|.|.+++-. -..++.+..+...+...-+.-++..++++.++|+ .|+||+++..
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 467788899999999988777653 3445677777766333334445545666666654 4899998743
Q ss_pred -eee---EEEe-------CCeeEEEEecCCCEEEEEECCCeEEEEECCC----CeEEEEecCCCCCeeEEEEcCCCCE-E
Q 008393 406 -SCT---RVFK-------GGTAQMRFQPHLGRYLAAAAENVVSILDAET----QACRLSLQGHTKPIDSVCWDPSGEL-L 469 (567)
Q Consensus 406 -~~~---~~~~-------~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~----~~~~~~~~~h~~~V~~l~~sp~g~~-l 469 (567)
.++ +.+. .+...++++.+-..+++|-.+|.|..+.-+- +....-......+|+.+++..+++. +
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 234 2222 2456788888888999999999999985321 1111112224678999999999987 4
Q ss_pred EEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-EEEec-cccCCee
Q 008393 470 ASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-TMTLT-AHEGLIA 543 (567)
Q Consensus 470 ~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-~~~~~-~h~~~V~ 543 (567)
.+++...|.+|.+.. +. .....+..++..+.|..+++....+++++. ..|++|+..... +..+. +|.....
T Consensus 188 Fv~Tt~~V~~y~l~g-r~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSG-RT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEML 260 (933)
T ss_pred EEEecceeEEEEecC-CC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEE
Confidence 555555899999973 33 445567788888888888876664555543 579999987544 33555 5655443
No 323
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.49 E-value=2.8e-06 Score=90.04 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=139.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMS 377 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 377 (567)
++..++.|+....+..+|+.+.+..+........|+-++. ++++|++|...|+|.+-|..+ ...++++..|.+.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-Cceeeeeeccccceee
Confidence 4557888888889999999998888877766655665554 578999999999999999998 7888999999999998
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCe
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPI 457 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V 457 (567)
++.. |+ ++++||..+. ...-..|..|++||++..+.+.-+.-+.++
T Consensus 223 fDv~--GN-lLitCG~S~R------------------------------~~~l~~D~FvkVYDLRmmral~PI~~~~~P- 268 (1118)
T KOG1275|consen 223 FDVQ--GN-LLITCGYSMR------------------------------RYNLAMDPFVKVYDLRMMRALSPIQFPYGP- 268 (1118)
T ss_pred eecc--CC-eEEEeecccc------------------------------cccccccchhhhhhhhhhhccCCcccccCc-
Confidence 8876 44 5558875322 112234667788888776655554444443
Q ss_pred eEEEEcCC--CCEEEEEeCCeEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 458 DSVCWDPS--GELLASVSEDSVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 458 ~~l~~sp~--g~~l~s~s~d~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.-+.|.|. ..++++.+.+...+-|..+.. ....+..+......+..+.+++++..++.+..+|.|.+|.-
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 33566663 334444444477777743332 22445555666777999999999999999999999999973
No 324
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.48 E-value=3.5e-07 Score=86.72 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=100.4
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-----eeeeeecccCccEEEEEECC-CCCeEEEEeCCCcEEEEEcC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL-----KSKTNLEEHSSLITDVRFSP-SMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~-----~~~~~l~~h~~~V~~i~fsp-~~~~l~s~s~dg~I~iwd~~ 359 (567)
..+.|.++.|...+.++..|...|.|.++|+... .+...+ .|...|+++.... ++.+|.+.+.+|+|++||++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 5678899999998999999999999999999754 233333 4888999998877 78899999999999999998
Q ss_pred CCCce---eEEeccCCCcEEEEEE--cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC
Q 008393 360 NPGYS---LRTFMGHSASVMSLDF--HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG 413 (567)
Q Consensus 360 ~~~~~---~~~~~~h~~~V~~l~~--~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~ 413 (567)
- .++ +..+.||...-.-+-+ .+. +.+|++++.|...+||.++.+..+.+++.
T Consensus 330 ~-~K~~~~V~qYeGHvN~~a~l~~~v~~e-eg~I~s~GdDcytRiWsl~~ghLl~tipf 386 (425)
T KOG2695|consen 330 A-TKCKKSVMQYEGHVNLSAYLPAHVKEE-EGSIFSVGDDCYTRIWSLDSGHLLCTIPF 386 (425)
T ss_pred h-hhcccceeeeecccccccccccccccc-cceEEEccCeeEEEEEecccCceeeccCC
Confidence 5 334 7888998765554444 333 45677899999999999999998877654
No 325
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=6.1e-06 Score=86.65 Aligned_cols=180 Identities=18% Similarity=0.236 Sum_probs=127.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
...++|++++ +++|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+.+... ..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT 107 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence 4567788887 56999999999999998753 33 333345443 56799999999999999999987433 33
Q ss_pred EeccCCCcEEEEEEcCC----CCeEEEEEeCCCcEEEEECCC---Ce--eeEEEeCCeeEEEEecCCCEEEEEECCCeEE
Q 008393 367 TFMGHSASVMSLDFHPN----KDDLICSCDGDGEIRYWSINN---GS--CTRVFKGGTAQMRFQPHLGRYLAAAAENVVS 437 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~----~~~li~s~~~dg~I~iwd~~~---~~--~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~ 437 (567)
.+. ...++.+++++|+ ....+++|+.-| +.++.-+= .. ......|.+.++.|. +.+++-+.|-.|+
T Consensus 108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~Gv~ 182 (846)
T KOG2066|consen 108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDGVK 182 (846)
T ss_pred eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCCcE
Confidence 333 4578999999998 223455888777 76665321 11 233445677777775 5577777888899
Q ss_pred EEECCCCeEEEEecCCCCCe------eEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 438 ILDAETQACRLSLQGHTKPI------DSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 438 i~d~~~~~~~~~~~~h~~~V------~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+||+.+.+.+..+......+ ..+.|.++. .|+.|-.|+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCeEEEEEEe
Confidence 99999998887766433332 357787654 5667777788888887
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.47 E-value=0.00048 Score=67.32 Aligned_cols=255 Identities=11% Similarity=0.122 Sum_probs=157.5
Q ss_pred CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe----------CCCcEEEEEcCCCCceeEEec---cCC---
Q 008393 309 KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS----------FDKTVRVWDADNPGYSLRTFM---GHS--- 372 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~---~h~--- 372 (567)
+.+.|+|.++++.+-.+..- -.-.+..+|+++.++++. ..-.|.+||..+ -.....+. +|.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-L~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-LSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-TEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-CcccceEecCCcchhee
Confidence 47999999999988777632 233467899999888753 234599999987 33322221 111
Q ss_pred -CcEEEEEEcCCCCeEEEEE-eCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECC-CCeEEEE
Q 008393 373 -ASVMSLDFHPNKDDLICSC-DGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAE-TQACRLS 449 (567)
Q Consensus 373 -~~V~~l~~~p~~~~li~s~-~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~-~~~~~~~ 449 (567)
.....+.++.+++.+++.- +--..|.|.|+..++.+..+..+.+...+-.....+.+.|.||.+..+.+. .|+...+
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEe
Confidence 1123456777877666432 224578899999999998888776666654445678999999999888887 4444322
Q ss_pred ----ecCCCCCe-eEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC----------CCceEEEEEeCCCCeE
Q 008393 450 ----LQGHTKPI-DSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN----------GNKFHSCVFHPTYPSL 513 (567)
Q Consensus 450 ----~~~h~~~V-~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~----------~~~i~~~~~sp~~~~l 513 (567)
|.....++ ..-++...+..++..+.. .|+-.|+... .......+... .+...-+++++..+.|
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~-~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl 252 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGD-SAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL 252 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTS-SEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCC-cccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence 22222222 234455555444445555 8888888643 22222222211 1123346888877767
Q ss_pred EEEEc---CC-------eEEEEECCCCcEEEeccccCCeeEEEEecCCC-EEEEEE-CCCcEEEcC
Q 008393 514 LVIGC---YQ-------SLELWNMSENKTMTLTAHEGLIAALAVSTETG-YVASAS-HDKFVKLWK 567 (567)
Q Consensus 514 ~~~~~---dg-------~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iWd 567 (567)
++.-. ++ .|.+||+.+++.+.-..-..++.+|..+.+.+ +|++.+ .++.|.+||
T Consensus 253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 66422 11 68999999999885444455688999998776 555544 578899886
No 327
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.43 E-value=0.00084 Score=70.10 Aligned_cols=240 Identities=15% Similarity=0.122 Sum_probs=137.1
Q ss_pred eEEEEEcCCCCeEEEE-eCC----CcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCC-----------cE
Q 008393 290 VICCHFSSDGKLLATG-GHD----KKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDK-----------TV 353 (567)
Q Consensus 290 V~~l~~s~dg~~lasg-~~d----g~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg-----------~I 353 (567)
+..+.+||||++||.+ +.. ..|+++|+++++.+...-.... ...+.|.++++.|+....+. .|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 3467899999999865 233 3599999999977654311111 22399999988776665433 37
Q ss_pred EEEEcCCCCce-eEEeccCCCc--EEEEEEcCCCCeEEEEEeCC---CcEEEEECCCC-----eeeEEEeC--CeeEEEE
Q 008393 354 RVWDADNPGYS-LRTFMGHSAS--VMSLDFHPNKDDLICSCDGD---GEIRYWSINNG-----SCTRVFKG--GTAQMRF 420 (567)
Q Consensus 354 ~iwd~~~~~~~-~~~~~~h~~~--V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~-----~~~~~~~~--~~~~~~~ 420 (567)
++|++.+.... ...+...... ...+..+++++.+++..... ..|.+.++..+ ........ ......-
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 88888874432 2344433332 66888999999888766554 35888888875 33333332 2222222
Q ss_pred ecCCCEEEEEEC----CCeEEEEECCCCe---EEEEecCCCCC--eeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCC
Q 008393 421 QPHLGRYLAAAA----ENVVSILDAETQA---CRLSLQGHTKP--IDSVCWDPSGELLASVSED---SVRVWTVGSGSEG 488 (567)
Q Consensus 421 ~~~~~~l~~~~~----dg~I~i~d~~~~~---~~~~~~~h~~~--V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~ 488 (567)
+. ++.+++.+. .+.|...++.... ....+..+... +..+.... +.+++....+ .|+++++..+
T Consensus 285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~Lvl~~~~~~~~~l~v~~~~~~--- 359 (414)
T PF02897_consen 285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-DYLVLSYRENGSSRLRVYDLDDG--- 359 (414)
T ss_dssp EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET-TEEEEEEEETTEEEEEEEETT-T---
T ss_pred cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC-CEEEEEEEECCccEEEEEECCCC---
Confidence 22 555555444 3678888888764 23345555553 44444432 2334444444 6999999722
Q ss_pred ceEEEeec-CCCceEEEEEeCCCCeEEEEEcC----CeEEEEECCCCcEEEe
Q 008393 489 ECVHELSC-NGNKFHSCVFHPTYPSLLVIGCY----QSLELWNMSENKTMTL 535 (567)
Q Consensus 489 ~~i~~~~~-~~~~i~~~~~sp~~~~l~~~~~d----g~I~iwd~~~~~~~~~ 535 (567)
.....+.. ..+.+..+...++.+.+...... .+++.||+.+++...+
T Consensus 360 ~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 360 KESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL 411 (414)
T ss_dssp EEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred cEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence 23333332 23345555555666655443332 4899999999886643
No 328
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00016 Score=76.93 Aligned_cols=211 Identities=13% Similarity=0.135 Sum_probs=141.0
Q ss_pred eeccCCccceeeeeeccCCC-CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-EEEEEECCCCCeEEE
Q 008393 269 MDVSQGFSFKEANSVRASTS-KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-ITDVRFSPSMPRLAT 346 (567)
Q Consensus 269 ~~~~~~~~~~~~~~l~~h~~-~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-V~~i~fsp~~~~l~s 346 (567)
|.-..-|..+.+.....-.+ .|. +|++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++
T Consensus 6 WrrF~lFq~~~i~~~~~~~G~~is--c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~s 82 (933)
T KOG2114|consen 6 WRRFSLFQWKEIPSLENFVGNAIS--CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFS 82 (933)
T ss_pred cceeeeeeeeecCCcccCCCCcee--EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEE
Confidence 44434444444433232333 444 45678889999999999988863 45666778777777 444444444468888
Q ss_pred EeCCCc-----EEEEEcCCC-----Ccee---EEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC--C--C
Q 008393 347 SSFDKT-----VRVWDADNP-----GYSL---RTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN--N--G 405 (567)
Q Consensus 347 ~s~dg~-----I~iwd~~~~-----~~~~---~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~--~--~ 405 (567)
.+.|+. |+||+++.. ..++ +.+. ....++.+++.+.+ -..++.|-.+|.|..+.-+ . +
T Consensus 83 v~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 83 VGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccc
Confidence 877654 899999742 1222 2221 12466888888877 4567788889999888532 1 1
Q ss_pred ee---eEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeE-EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEe
Q 008393 406 SC---TRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQAC-RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWT 481 (567)
Q Consensus 406 ~~---~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~-~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd 481 (567)
.. ...-+.+++.+.+..++..++.+.....|.+|.+....+ ...+..|...+.|..+++...-+++++...|.+|+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~ 241 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYD 241 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEc
Confidence 11 112245788999998888867777778888998885553 34477788899999998766657777777899999
Q ss_pred CC
Q 008393 482 VG 483 (567)
Q Consensus 482 ~~ 483 (567)
..
T Consensus 242 sd 243 (933)
T KOG2114|consen 242 SD 243 (933)
T ss_pred CC
Confidence 86
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=2.5e-05 Score=82.23 Aligned_cols=181 Identities=17% Similarity=0.251 Sum_probs=125.5
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.+.+.|++++ ++.|+.|..+|.|++++... .. .+...|... ..+|. .+++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCC--cc-ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence 3446666665 56899999999999999875 22 344445444 44555 5669999999999998887655
Q ss_pred --EEEeCCeeEEEEecC-----CCEEEEEECCCeEEEEECCCC--eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE
Q 008393 409 --RVFKGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQ--ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV 479 (567)
Q Consensus 409 --~~~~~~~~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i 479 (567)
..|+.+...++++|+ .+.+++|+..| +.++.-+-. +.-..+....++|.+++|. |+++|-++++.|+|
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v 183 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV 183 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence 456778899999998 46788888888 777654321 1111455567899999997 77898888889999
Q ss_pred EeCCCCCCCceEEEeecCCC------ceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 480 WTVGSGSEGECVHELSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 480 wd~~~~~~~~~i~~~~~~~~------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
||+.++. .+..+..... ....+.|.++. .++.|...+|+|..++.
T Consensus 184 yd~~~~~---~l~~i~~p~~~~R~e~fpphl~W~~~~--~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 184 YDTPTRQ---RLTNIPPPSQSVRPELFPPHLHWQDED--RLVIGWGDSVKICSIKK 234 (846)
T ss_pred Eeccccc---eeeccCCCCCCCCcccCCCceEecCCC--eEEEecCCeEEEEEEec
Confidence 9998763 3333222211 13345676665 35556666888888873
No 330
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=0.00099 Score=68.46 Aligned_cols=251 Identities=16% Similarity=0.140 Sum_probs=166.5
Q ss_pred EEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEE
Q 008393 311 AVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 311 I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~ 389 (567)
+.+++..+.+....+..+. ....+.+.+++..+..... ...+.+.+... .........-...-..+++.+.+..+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ceeeeeccCCCccccceeeCCCCCeEEE
Confidence 5666666655555554333 4566788888865544432 22344444441 2211111111144557888899888888
Q ss_pred EEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEEC---CCeEEEEECCCCeEEEEecCCCCCeeEEEEcC
Q 008393 390 SCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAA---ENVVSILDAETQACRLSLQGHTKPIDSVCWDP 464 (567)
Q Consensus 390 s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~---dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp 464 (567)
....++.|.+.|..+.+......- ....+.++++++.++++.. ++.+.+.|..+.+.......-..+ ..++++|
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p 169 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDP 169 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECC
Confidence 888889999999888887766553 4567899999988888777 689999999999888775544445 8899999
Q ss_pred CCCEEEEEeC-C-eEEEEeCCCCCCCc-eEEEeecCCCceEEEEEeCCCCeEEEEEcC---CeEEEEECCCCcEEEe--c
Q 008393 465 SGELLASVSE-D-SVRVWTVGSGSEGE-CVHELSCNGNKFHSCVFHPTYPSLLVIGCY---QSLELWNMSENKTMTL--T 536 (567)
Q Consensus 465 ~g~~l~s~s~-d-~I~iwd~~~~~~~~-~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d---g~I~iwd~~~~~~~~~--~ 536 (567)
+|+.++.+.. + .|.++|........ ...........-..+.+.+++.++++.... +.+...|..++..... .
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~ 249 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLP 249 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccc
Confidence 9997777763 3 89999976542110 000012223344667999999988877665 4899999999887744 2
Q ss_pred cccCCeeEEEEecCCCEEEEEECC-CcEE
Q 008393 537 AHEGLIAALAVSTETGYVASASHD-KFVK 564 (567)
Q Consensus 537 ~h~~~V~~l~~spdg~~l~s~s~D-g~I~ 564 (567)
.-......+.++|+|+++.+.... +.|.
T Consensus 250 ~~~~~~~~v~~~p~g~~~yv~~~~~~~V~ 278 (381)
T COG3391 250 VGSGAPRGVAVDPAGKAAYVANSQGGTVS 278 (381)
T ss_pred cccCCCCceeECCCCCEEEEEecCCCeEE
Confidence 111156678899999988776433 4443
No 331
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.37 E-value=2.8e-05 Score=80.15 Aligned_cols=191 Identities=13% Similarity=0.242 Sum_probs=127.3
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC---CcEEEEECCCCeeeEE--EeCCeeEEEEecCCCEEEEEEC-CC-
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD---GEIRYWSINNGSCTRV--FKGGTAQMRFQPHLGRYLAAAA-EN- 434 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d---g~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-dg- 434 (567)
+.....+..-...+..-+|+|++..+.+..-.. ..+.++|++++..... +.+......|+|++.+++.+.. ++
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCC
Confidence 344455555566778888999988876654333 3499999998876554 4566777889999999887776 44
Q ss_pred -eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCC
Q 008393 435 -VVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPT 509 (567)
Q Consensus 435 -~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~ 509 (567)
.|+++|+.++.... +....+.-..-.|+|||++|+..++. .|.+++++.... ..+......-..-.|+||
T Consensus 262 ~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~Spd 336 (425)
T COG0823 262 PDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPD 336 (425)
T ss_pred ccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCC
Confidence 78888988877433 44333434467899999999988765 477778765432 223222333336689999
Q ss_pred CCeEEEEEcC-C--eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEE
Q 008393 510 YPSLLVIGCY-Q--SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 510 ~~~l~~~~~d-g--~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~ 557 (567)
|++|+..+.. | .|.++|+.++.......+........|.++++.|...
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEe
Confidence 9999888754 3 4788888776644443444444455566666655443
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.36 E-value=0.00011 Score=70.88 Aligned_cols=215 Identities=9% Similarity=0.060 Sum_probs=141.5
Q ss_pred eeeeCCCcchhhcccccccCCCCC------CceEEeeccCCCCCCCCCccceeccCCccceeeeeeccCCCCeEEEEEcC
Q 008393 224 QLWDDKDLELRADMDRLVEDGSLD------DNVESFLSHDDTDPRDAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSS 297 (567)
Q Consensus 224 ~~Wd~~~g~~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~ 297 (567)
.+||..+|+....+.......-++ +.-..+..+.+.....+.+.+||... .+..+..+..|.-.-..+.+.|
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~p 108 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMP 108 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcC
Confidence 577888876655444222211111 11233444555556666778899874 4677888888877777899999
Q ss_pred CCCeEEEEe------------------CCCcEEEEeCCCCeeeee--e--cccCccEEEEEECCCCCeEEEEeCCCc---
Q 008393 298 DGKLLATGG------------------HDKKAVLWHTDTLKSKTN--L--EEHSSLITDVRFSPSMPRLATSSFDKT--- 352 (567)
Q Consensus 298 dg~~lasg~------------------~dg~I~vwd~~~~~~~~~--l--~~h~~~V~~i~fsp~~~~l~s~s~dg~--- 352 (567)
||+.|+++. .+-.+.+.|..+|+.+.. + ..|...|+.+++.++|..++..-..|.
T Consensus 109 DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~ 188 (305)
T PF07433_consen 109 DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGD 188 (305)
T ss_pred CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCc
Confidence 998887763 223466667788888776 4 348889999999999977776655442
Q ss_pred ----EEEEEcCCCCceeE----EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecC
Q 008393 353 ----VRVWDADNPGYSLR----TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPH 423 (567)
Q Consensus 353 ----I~iwd~~~~~~~~~----~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~ 423 (567)
|.+++....-..+. ......+.|-+|+++.++..+++|+-..+.+.+||..+++.+....-. ...++...+
T Consensus 189 ~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~ 268 (305)
T PF07433_consen 189 APPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPDACGVAPTDD 268 (305)
T ss_pred cCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCceeeeeecCC
Confidence 44554443111110 112345789999999999988889999999999999999998877643 334444444
Q ss_pred CCEEEEEECCCeEEEEECC
Q 008393 424 LGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~ 442 (567)
+ +++.+..|.+......
T Consensus 269 ~--f~~ssG~G~~~~~~~~ 285 (305)
T PF07433_consen 269 G--FLVSSGQGQLIRLSPD 285 (305)
T ss_pred c--eEEeCCCccEEEccCc
Confidence 3 6666656665444433
No 333
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.36 E-value=0.00037 Score=66.21 Aligned_cols=198 Identities=14% Similarity=0.189 Sum_probs=115.7
Q ss_pred eeeeccCCCCeEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 280 ANSVRASTSKVICCHFSSDGK-LLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 280 ~~~l~~h~~~V~~l~~s~dg~-~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
.+.+.+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.-. .+....|++..++.++++.-.++.+.+++
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 455666677799999999755 5666677788888886 47887776533 35688899988887777766789999999
Q ss_pred cCCCCce-----eEEe-----ccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC---CeeeEE-----------EeC
Q 008393 358 ADNPGYS-----LRTF-----MGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN---GSCTRV-----------FKG 413 (567)
Q Consensus 358 ~~~~~~~-----~~~~-----~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~---~~~~~~-----------~~~ 413 (567)
+...... +..+ ..++..+..|+|.+.++.|+++ -+..-..+|.+.. ...+.. +..
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeeccccccccccceec
Confidence 8542211 1111 1345668999999998888855 4555566666553 222211 122
Q ss_pred CeeEEEEecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCCeEEEE
Q 008393 414 GTAQMRFQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSEDSVRVW 480 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d~I~iw 480 (567)
....+.++|..+.+++-+. ...|.++| .+|+.+..+.-.. ...-.|+|+++|++.++.-.+..++|
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence 4577889999888877776 56888888 6666555443222 24678999999987766544444443
No 334
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.33 E-value=0.00094 Score=68.81 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=69.9
Q ss_pred EEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEE
Q 008393 477 VRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~ 555 (567)
-.+|++...+ .+++.... .....+.+++++|+...++.|+.||.|.+||...+..... ...-.++.++|+|+|.+|+
T Consensus 238 ~ciYE~~r~k-lqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNK-LQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCc-eeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEE
Confidence 4667775432 33333222 4567899999999999999999999999999987754433 4445688999999999999
Q ss_pred EEECCCcEEEcC
Q 008393 556 SASHDKFVKLWK 567 (567)
Q Consensus 556 s~s~Dg~I~iWd 567 (567)
+|+.-|.|.+||
T Consensus 316 V~s~qGelQ~FD 327 (545)
T PF11768_consen 316 VGSEQGELQCFD 327 (545)
T ss_pred EEcCCceEEEEE
Confidence 999999999997
No 335
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.33 E-value=0.00029 Score=74.24 Aligned_cols=180 Identities=8% Similarity=-0.053 Sum_probs=112.8
Q ss_pred cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--CCeeEEEEecCCCEEEEEECC----CeEEEEECCCCeEEEEecCCC
Q 008393 381 HPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--GGTAQMRFQPHLGRYLAAAAE----NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 381 ~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d----g~I~i~d~~~~~~~~~~~~h~ 454 (567)
.++|..+..+.-..+.+.+.|..+.+....+. +....+.++++++++++.+.+ ..+...+..+...+..+...
T Consensus 201 pnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~- 279 (635)
T PRK02888 201 PNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA- 279 (635)
T ss_pred CCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-
Confidence 44555444444445677778888776665543 233457788998888888632 24444444333322222211
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCC-C-CCceEEEeecCCCceEEEEEeCCCCeEEEEEc-CCeEEEEECCCCc
Q 008393 455 KPIDSVCWDPSGELLASVSEDSVRVWTVGSG-S-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGC-YQSLELWNMSENK 531 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~-~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~ 531 (567)
.+ .++.++|++... ..+.|.++|..+. . ....+..+ .-....+.+.++|||+++++++. +.+|.|+|+.+.+
T Consensus 280 -~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 280 -RI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred -HH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 01 133467887665 3348999998761 0 11233333 34666788999999999988876 6799999998755
Q ss_pred E------------E-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 532 T------------M-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 532 ~------------~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
. . .... .......+|.++|..+.|.-.|..|..||
T Consensus 355 ~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn 402 (635)
T PRK02888 355 DLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWN 402 (635)
T ss_pred hhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEe
Confidence 2 2 2222 22344568899998888888899999996
No 336
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=2.4e-05 Score=82.37 Aligned_cols=259 Identities=14% Similarity=0.123 Sum_probs=159.3
Q ss_pred EEEEcCCCCeEEEEe----CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 292 CCHFSSDGKLLATGG----HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 292 ~l~~s~dg~~lasg~----~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
-..|+|...+||+++ ..|.|.|| .++|++-..... .-.+++++|+|..-.|+.|=.-|.+.+|...+ .+.-..
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~-~e~htv 96 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT-TETHTV 96 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCC-ceeeee
Confidence 357888888888776 46888888 567765443321 12256799999988899999999999999987 444444
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee------------------EEEe---------------CC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT------------------RVFK---------------GG 414 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~------------------~~~~---------------~~ 414 (567)
...|..+|..+.|+++|..++ ++..-|.|.+|...-...+ ..+. +.
T Consensus 97 ~~th~a~i~~l~wS~~G~~l~-t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 97 VETHPAPIQGLDWSHDGTVLM-TLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred ccCCCCCceeEEecCCCCeEE-EcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 557999999999999998666 9999999999987621111 0000 00
Q ss_pred eeEE-----------------EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e
Q 008393 415 TAQM-----------------RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 476 (567)
Q Consensus 415 ~~~~-----------------~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~ 476 (567)
...+ .-.|++..+++++.+|+|+..|-... +....+.. +. ..+-|.+-..-|++.-.+ +
T Consensus 176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g~-~~~V~k~d-S~-vQmLf~~~~eai~~i~e~lr 252 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNGR-QRTVHKLD-SE-VQMLFMGYCEAISIIIEFLR 252 (1416)
T ss_pred hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCCc-EEEEEEcc-ch-HHHHHhcccceEEEEeeece
Confidence 0000 12345667888888999888875433 22222211 11 123344444444444444 4
Q ss_pred EEEEeCCC-CC------------CCce------------E---EEe-ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 477 VRVWTVGS-GS------------EGEC------------V---HEL-SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 477 I~iwd~~~-~~------------~~~~------------i---~~~-~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
+.++-+.. |. .+.. + ..+ ...+..+.++++...+..|+.|...|.+++|--
T Consensus 253 ~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~ 332 (1416)
T KOG3617|consen 253 DCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLD 332 (1416)
T ss_pred eeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEeee
Confidence 43333321 10 0000 0 000 112556899999999999999999999999953
Q ss_pred CCC--------cEEEe---ccccCCeeEEEEecCCCEEEEE
Q 008393 528 SEN--------KTMTL---TAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 528 ~~~--------~~~~~---~~h~~~V~~l~~spdg~~l~s~ 557 (567)
... ....+ ....+.|+.+.|.|-...++.-
T Consensus 333 v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn 373 (1416)
T KOG3617|consen 333 VNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVN 373 (1416)
T ss_pred cCccccCCCCcceEEecCchhhccceEEEEeccccchhhhh
Confidence 322 11222 3345679999998865554443
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.00039 Score=73.95 Aligned_cols=222 Identities=14% Similarity=0.163 Sum_probs=130.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeecccCcc-----EE-EEEECCCCCeEEEEe---------CCCcEEEEEcCCCCce
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL-----IT-DVRFSPSMPRLATSS---------FDKTVRVWDADNPGYS 364 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~-----V~-~i~fsp~~~~l~s~s---------~dg~I~iwd~~~~~~~ 364 (567)
..++.++.++.|+.+|.++++.+......... +. ...+. +..++.++ .+|.|..+|..+++.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~- 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL- 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce-
Confidence 57778888999999999999999887643321 11 11222 23455553 367888999988443
Q ss_pred eEEecc-CC-------------------CcEE-EEEEcCCCCeEEEEEeCCC------------------cEEEEECCCC
Q 008393 365 LRTFMG-HS-------------------ASVM-SLDFHPNKDDLICSCDGDG------------------EIRYWSINNG 405 (567)
Q Consensus 365 ~~~~~~-h~-------------------~~V~-~l~~~p~~~~li~s~~~dg------------------~I~iwd~~~~ 405 (567)
+-.+.. .. ..|. ...+.+.+. +++.++.++ .|.-+|++++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 333221 11 0111 233444444 444565554 7999999999
Q ss_pred eeeEEEeCCee---------EEEEe----cCCC---EEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEE
Q 008393 406 SCTRVFKGGTA---------QMRFQ----PHLG---RYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELL 469 (567)
Q Consensus 406 ~~~~~~~~~~~---------~~~~~----~~~~---~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l 469 (567)
+.+..+..... ...+. -++. .+++++.+|.+..+|.++++.+...... ...++.+| ..+
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~v 341 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLV 341 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceE
Confidence 99887653211 01111 1222 4677778999999999999998876421 11233333 222
Q ss_pred EEEe------------------CC-eEEEEeCCCCCCCceEEEeecCC--------CceEEEEEeCCCCeEEEEEcCCeE
Q 008393 470 ASVS------------------ED-SVRVWTVGSGSEGECVHELSCNG--------NKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 470 ~s~s------------------~d-~I~iwd~~~~~~~~~i~~~~~~~--------~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
+.+. .+ .|.-+|+.++ +.+....... .....-...-.+..|++++.+|.|
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l 418 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYF 418 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeE
Confidence 2211 23 6777787776 3333332220 111111112255679999999999
Q ss_pred EEEECCCCcEE
Q 008393 523 ELWNMSENKTM 533 (567)
Q Consensus 523 ~iwd~~~~~~~ 533 (567)
+.+|..+++.+
T Consensus 419 ~ald~~tG~~l 429 (488)
T cd00216 419 RAFDATTGKEL 429 (488)
T ss_pred EEEECCCCcee
Confidence 99999999988
No 338
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.30 E-value=0.00011 Score=75.70 Aligned_cols=195 Identities=16% Similarity=0.176 Sum_probs=124.9
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEe---CC-CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSS---FD-KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD 394 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s---~d-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d 394 (567)
+.....+......+..-+|+|++..++... .. ..+.++|++++... .... ..+.-...+|+|||+.++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~-~i~~-~~g~~~~P~fspDG~~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP-VILN-FNGNNGAPAFSPDGSKLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc-eeec-cCCccCCccCCCCCCEEEEEECCC
Confidence 445555555566677889999998765542 22 45899999874432 2221 333445678999999999998888
Q ss_pred Cc--EEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECC-C--eEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC
Q 008393 395 GE--IRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAE-N--VVSILDAETQACRLSLQGHTKPIDSVCWDPSGE 467 (567)
Q Consensus 395 g~--I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d-g--~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~ 467 (567)
|. |+++|+..+...+.. .+....-.|+|+|..++..+.. | .|.++|.+......... ....-..-.|+|||+
T Consensus 260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~-~~~~~~~p~~SpdG~ 338 (425)
T COG0823 260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF-SGGGNSNPVWSPDGD 338 (425)
T ss_pred CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-cCCCCcCccCCCCCC
Confidence 86 555677776643321 1223456799999999888774 3 78888888876533222 222222778999999
Q ss_pred EEEEEeC--C--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC
Q 008393 468 LLASVSE--D--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ 520 (567)
Q Consensus 468 ~l~s~s~--d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg 520 (567)
+|+..+. + .|.+.|+.++.. +..+ ........-.|.+++..++..+..+
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~l-t~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGK---IRIL-TSTYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCc---EEEc-cccccCCCCCcCCCCceEEEeccCC
Confidence 9998883 3 477777766543 2222 1222233347888888777665543
No 339
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.30 E-value=0.00093 Score=68.03 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=131.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-c---------------c-CccEEEEEECCCCCeEEEEeC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-E---------------H-SSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~---------------h-~~~V~~i~fsp~~~~l~s~s~ 349 (567)
...+....|||+|+.+|... ++.|.+++..++.....-. + . -+.-..+.|+||+++|+....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 67788999999999999885 7899999987774443221 2 0 122356889999999887643
Q ss_pred C-Cc-----------------------------------EEEEEcCCCCce-eEEe---ccCCCcEEEEEEcCCCCeEEE
Q 008393 350 D-KT-----------------------------------VRVWDADNPGYS-LRTF---MGHSASVMSLDFHPNKDDLIC 389 (567)
Q Consensus 350 d-g~-----------------------------------I~iwd~~~~~~~-~~~~---~~h~~~V~~l~~~p~~~~li~ 389 (567)
| .. +.|+|+.++... +... ..-...+..+.|.+++..+++
T Consensus 121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~ 200 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV 200 (353)
T ss_dssp E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence 3 11 233444432211 1111 123455778889888774443
Q ss_pred E-EeCC---CcEEEEECCCCeeeEEEeC-------CeeEEEEe-cCCCEEEEEEC-CC--eEEEEECCCCeEEEEecCCC
Q 008393 390 S-CDGD---GEIRYWSINNGSCTRVFKG-------GTAQMRFQ-PHLGRYLAAAA-EN--VVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 390 s-~~~d---g~I~iwd~~~~~~~~~~~~-------~~~~~~~~-~~~~~l~~~~~-dg--~I~i~d~~~~~~~~~~~~h~ 454 (567)
. ...+ ..+.++|..++.+...+.. ......+. +++..++..+. +| .|++++...+... .+....
T Consensus 201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~ 279 (353)
T PF00930_consen 201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD 279 (353)
T ss_dssp EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence 3 3333 2467778877665443321 22345554 66666665554 55 6778888887755 555455
Q ss_pred CCeeE-EEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 455 KPIDS-VCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 455 ~~V~~-l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
-.|.. +.|+++++.|+..+.. .|+..++..+ ..+..+......-..+.|+|++++++....
T Consensus 280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 56744 6788887766544432 4656666512 234444443333368899999998876654
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.28 E-value=0.00036 Score=72.25 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=120.1
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEE-EcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVW-DADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iw-d~~~~ 361 (567)
+....-....+.++|+|++++++ .||...||.....+.... +.....+|...+ .+|+-...++|.|+ +++.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~- 99 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKN- 99 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcc-
Confidence 33344456789999999999985 488888888554444332 234567888844 57777778889996 4432
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-eeEEEEecCCCEEEEEECCCeEEEEE
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-TAQMRFQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~dg~I~i~d 440 (567)
.....+. ....+..|-. |..|+ ..+ ++.|.+||+.+++.++.+... +..+.|++++..++..+.+ .+.|++
T Consensus 100 -~~~k~i~-~~~~~~~If~---G~LL~-~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 100 -EVVKSIK-LPFSVEKIFG---GNLLG-VKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp --TT------SS-EEEEE----SSSEE-EEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred -ccceEEc-CCcccceEEc---CcEEE-EEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 1112222 1223444433 55444 444 458999999999999999877 4899999998887777654 555554
Q ss_pred CCCC--------------eEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE
Q 008393 441 AETQ--------------ACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF 506 (567)
Q Consensus 441 ~~~~--------------~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~ 506 (567)
.... ..+..+ ...|.+.+|..+ .++..+...|+. +..| ....+..-..++.-+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~~E~---~~~IkSg~W~~d--~fiYtT~~~lkY--l~~G----e~~~i~~ld~~~yllgy 240 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELIHEI---SERIKSGCWVED--CFIYTTSNHLKY--LVNG----ETGIIAHLDKPLYLLGY 240 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TTEEEE--EETT----EEEEEEE-SS--EEEEE
T ss_pred ecchhcccccccCchhceEEEEEe---cceeEEEEEEcC--EEEEEcCCeEEE--EEcC----CcceEEEcCCceEEEEE
Confidence 3322 333332 467999999877 455445446666 3333 22233333556777788
Q ss_pred eCCCCeEEEEEcCCeEEEEECC
Q 008393 507 HPTYPSLLVIGCYQSLELWNMS 528 (567)
Q Consensus 507 sp~~~~l~~~~~dg~I~iwd~~ 528 (567)
.+..+.++....++.|..+.+.
T Consensus 241 ~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 241 LPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTTTEEEEE-TT--EEEEE--
T ss_pred EccCCEEEEEECCCCEEEEEEC
Confidence 8877788888888888887665
No 341
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.27 E-value=0.00015 Score=79.85 Aligned_cols=226 Identities=13% Similarity=0.171 Sum_probs=132.2
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
.+.|.++.|..+..-|+.+..+|.|.+-|.++.. +.....-...|.+++|+||+..+. ..+.++++.+-+ .+-..+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee~l~-liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEELLA-LITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCcEEE-EEeCCcEEEEEe-ccccch
Confidence 3579999999999999999999999999887633 233344567899999999976544 555555555433 211111
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECCCe----------EEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEE-----e
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAENV----------VSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV-----S 473 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~dg~----------I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~-----s 473 (567)
....-. ..-.+ .+.++.++.... ....+....+.......-.+.-++|+|--||+++|+. .
T Consensus 144 ~E~~L~---~d~~~-~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~ 219 (1265)
T KOG1920|consen 144 AEKPLD---ADDER-KSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESET 219 (1265)
T ss_pred hccccc---ccccc-ccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccC
Confidence 110000 00000 011222222111 1111111000000000011223469999999999984 3
Q ss_pred CC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc---CCeEEEEECCCCcEE----EeccccCCeeEE
Q 008393 474 ED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMSENKTM----TLTAHEGLIAAL 545 (567)
Q Consensus 474 ~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~I~iwd~~~~~~~----~~~~h~~~V~~l 545 (567)
.. .|+|||-+ + ..-..-....+.-.+++|-|.|..+++... ++.|.+|.-+..+.- .+......|..+
T Consensus 220 ~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L 295 (1265)
T KOG1920|consen 220 GTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEEL 295 (1265)
T ss_pred CceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhee
Confidence 32 79999976 3 111122223344567899999998888754 457999986543322 233444559999
Q ss_pred EEecCCCEEEE---EECCCcEEEc
Q 008393 546 AVSTETGYVAS---ASHDKFVKLW 566 (567)
Q Consensus 546 ~~spdg~~l~s---~s~Dg~I~iW 566 (567)
+|+.++..||+ ......|++|
T Consensus 296 ~Wns~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 296 AWNSNSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eecCCCCceeeeecccccceEEEE
Confidence 99999999887 4445559998
No 342
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=0.00061 Score=69.99 Aligned_cols=217 Identities=16% Similarity=0.122 Sum_probs=150.5
Q ss_pred EEEEEcCCCCe-EEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC---CCcEEEEEcCCCCceeE
Q 008393 291 ICCHFSSDGKL-LATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF---DKTVRVWDADNPGYSLR 366 (567)
Q Consensus 291 ~~l~~s~dg~~-lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~---dg~I~iwd~~~~~~~~~ 366 (567)
.+++++++++. +++...++.|.+.|..+.+....+.--. .-..++|+++++.++.+.. ++++.+.|..+ .....
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~~~ 154 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKVTA 154 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeEEE
Confidence 46888898874 4555556999999988777766655322 5678999999988777765 67888888887 44444
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE------E-EeCCeeEEEEecCCCEEEEEECC---CeE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR------V-FKGGTAQMRFQPHLGRYLAAAAE---NVV 436 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~------~-~~~~~~~~~~~~~~~~l~~~~~d---g~I 436 (567)
....-..+ ..+++.|++..++++-..++.|.+.|.......+ . .......+.+.+++.++++.... +.+
T Consensus 155 ~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v 233 (381)
T COG3391 155 TIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNV 233 (381)
T ss_pred EEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceE
Confidence 43332233 8899999999888777789999999988776664 1 11234678899999988777664 599
Q ss_pred EEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCC
Q 008393 437 SILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
...|..++........-.. ....+.++|+|+++++.... .+.+.|..+......+............+++.+..
T Consensus 234 ~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 234 LKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred EEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence 9999999877765221112 45678999999988887544 89999987653333333333333335555555543
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.22 E-value=7e-07 Score=91.17 Aligned_cols=197 Identities=15% Similarity=0.197 Sum_probs=129.7
Q ss_pred CCCeEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCe--eeeeecccCccEEEEEECC-CCCeEEEEe----CCCcEEEEE
Q 008393 287 TSKVICCHFSSDG--KLLATGGHDKKAVLWHTDTLK--SKTNLEEHSSLITDVRFSP-SMPRLATSS----FDKTVRVWD 357 (567)
Q Consensus 287 ~~~V~~l~~s~dg--~~lasg~~dg~I~vwd~~~~~--~~~~l~~h~~~V~~i~fsp-~~~~l~s~s----~dg~I~iwd 357 (567)
+..+.|+++.-+. .++++|..+|.|.+-.+.... ......+|...+++++|++ |.+.||.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 4556788776644 478899999999998776432 2345567888999999998 455666663 256799999
Q ss_pred cCCC----CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC-eeeEEEeC-CeeEEEEecCCCEEEEEE
Q 008393 358 ADNP----GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG-SCTRVFKG-GTAQMRFQPHLGRYLAAA 431 (567)
Q Consensus 358 ~~~~----~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~-~~~~~~~~-~~~~~~~~~~~~~l~~~~ 431 (567)
+.+. ........+......+++|..+ ..++.+|.....+.++|++.. .....+.. .+..+.+.|-....++..
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence 9863 1111111223455668899866 456668888889999999832 22222222 344566777556677777
Q ss_pred CCCeEEEEEC-CCCe-EEEEecCCC----CCeeEEEEcCCCC-EEEEEeCC--eEEEEeCCC
Q 008393 432 AENVVSILDA-ETQA-CRLSLQGHT----KPIDSVCWDPSGE-LLASVSED--SVRVWTVGS 484 (567)
Q Consensus 432 ~dg~I~i~d~-~~~~-~~~~~~~h~----~~V~~l~~sp~g~-~l~s~s~d--~I~iwd~~~ 484 (567)
.|+.|.+||. ++-+ ++..+...+ ..+..++|.|... ++++...| +|++||+..
T Consensus 215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 7999999994 3322 222222112 2489999999543 66777777 899999864
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.22 E-value=0.00024 Score=72.61 Aligned_cols=258 Identities=13% Similarity=0.097 Sum_probs=135.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCC---C----
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADN---P---- 361 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~---~---- 361 (567)
.|+++.|+++..-|++|...|.|.||.+...+... ......-..+.|.+- ...++.-.+-|+.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~ 74 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE 74 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence 58899999999999999999999999876433221 000001111111110 00111223334322 1
Q ss_pred -CceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe--C---------CeeEEEEe-----cCC
Q 008393 362 -GYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK--G---------GTAQMRFQ-----PHL 424 (567)
Q Consensus 362 -~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~--~---------~~~~~~~~-----~~~ 424 (567)
-.+...+....++|++++.+.-| +++.|..+|.+.|.|++....+..-. . .++++.|. .++
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 12334455568999999998554 88899999999999999887776521 1 23445554 222
Q ss_pred ---CEEEEEECCCeEEEEECC--C-Ce----EEEEecCCCCCeeEEE-EcCC---------------------CCEEEEE
Q 008393 425 ---GRYLAAAAENVVSILDAE--T-QA----CRLSLQGHTKPIDSVC-WDPS---------------------GELLASV 472 (567)
Q Consensus 425 ---~~l~~~~~dg~I~i~d~~--~-~~----~~~~~~~h~~~V~~l~-~sp~---------------------g~~l~s~ 472 (567)
-.+++|+..|.+.+|.+. . +. .......+.++|..|. |+.+ ..+++.+
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 358888899999999764 1 21 1222224567776665 3222 1266777
Q ss_pred eCCeEEEEeCCCCCCCceEEEeecCCCceEEEEE-----eCCCCeEEEEEcCCeEEEEECCCCcEE-Eecc----ccCCe
Q 008393 473 SEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVF-----HPTYPSLLVIGCYQSLELWNMSENKTM-TLTA----HEGLI 542 (567)
Q Consensus 473 s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~-----sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~----h~~~V 542 (567)
++..++++...+. +..+...........+.+ ...+..|++...+|.|++|.+..-+.+ .+.- ....+
T Consensus 233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~ 309 (395)
T PF08596_consen 233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL 309 (395)
T ss_dssp -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence 7779999998765 334333322223333444 235677888899999999999987766 2222 22345
Q ss_pred eEEEEecCCCEEEEEEC
Q 008393 543 AALAVSTETGYVASASH 559 (567)
Q Consensus 543 ~~l~~spdg~~l~s~s~ 559 (567)
...+++++|..++-.+.
T Consensus 310 ~~ssis~~Gdi~~~~gp 326 (395)
T PF08596_consen 310 SSSSISRNGDIFYWTGP 326 (395)
T ss_dssp TT-EE-TTS-EEEE-SS
T ss_pred cccEECCCCCEEEEeCc
Confidence 66778888887766554
No 345
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.20 E-value=0.00062 Score=66.55 Aligned_cols=196 Identities=16% Similarity=0.195 Sum_probs=126.6
Q ss_pred EEEEcCCCCeEEEEe--CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec
Q 008393 292 CCHFSSDGKLLATGG--HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM 369 (567)
Q Consensus 292 ~l~~s~dg~~lasg~--~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 369 (567)
.++++.||+++++.. -.-.|.|.|+...+.+.++.... +..+-=+. ...+.+.|.||.+.-..++..++......
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEecC-CCceEEEecCCceEEEEECCCCCEeEeec
Confidence 478999999888764 34679999999999988776433 22221122 24688999999999999997666543221
Q ss_pred ----cCCCcEE-EEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE--EE-------------eCCeeEEEEecCCCEEEE
Q 008393 370 ----GHSASVM-SLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--VF-------------KGGTAQMRFQPHLGRYLA 429 (567)
Q Consensus 370 ----~h~~~V~-~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--~~-------------~~~~~~~~~~~~~~~l~~ 429 (567)
....++. .-.+...+..+++ -+.+|.|+-.|+....... .+ .++-..+++++..+++++
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F-~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv 254 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYF-VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV 254 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEE-EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred cccCCCCcccccccceECCCCeEEE-EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence 1122222 2334444444553 5678999998887765322 22 234456888888888776
Q ss_pred EECC----------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC-EEEEEeC-C-eEEEEeCCCCCCCceEEEee
Q 008393 430 AAAE----------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE-LLASVSE-D-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 430 ~~~d----------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~-~l~s~s~-d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.-.. ..|.+||+.+++.+.++.. ..++.+|.++.+.+ +|++.+. + .|.+||..++ +.+..+.
T Consensus 255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~ 329 (342)
T PF06433_consen 255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIE 329 (342)
T ss_dssp EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred EecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehh
Confidence 4321 2699999999999988874 24688999999877 6655544 4 8999999988 4555544
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.09 E-value=0.0015 Score=62.07 Aligned_cols=196 Identities=17% Similarity=0.254 Sum_probs=110.2
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----CCeeEEEEecCCCEEEEEEC-CCeEEEEEC
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----GGTAQMRFQPHLGRYLAAAA-ENVVSILDA 441 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~-dg~I~i~d~ 441 (567)
.+.+-...+..|+|.|+.+.|+++....+.|..++.. ++.++.+. +....+++..++ .++.... ++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~-~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNG-RYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STT-EEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCC-EEEEEEcCCCcEEEEEE
Confidence 4455566799999999989999999999999999974 77777764 346778887654 5555554 788988887
Q ss_pred CCC------eEEEEec-----CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC--CCCCceEEEe------ecCCCce
Q 008393 442 ETQ------ACRLSLQ-----GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS--GSEGECVHEL------SCNGNKF 501 (567)
Q Consensus 442 ~~~------~~~~~~~-----~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~--~~~~~~i~~~------~~~~~~i 501 (567)
... .....+. .+...+-.|+|++.++.|+.+-+. -..||.+.. ......+... ...-..+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 331 1111221 244568999999987767666666 566666653 1111111111 1123447
Q ss_pred EEEEEeCCCCeEEEEEc-CCeEEEEECCCCcEE---Eecc--c-----cCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 502 HSCVFHPTYPSLLVIGC-YQSLELWNMSENKTM---TLTA--H-----EGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~-dg~I~iwd~~~~~~~---~~~~--h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
..+.++|....|++-+. ...|..+| .+|+.+ .+.. | -...-.|+|.++|++.++ ++-+..++|
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 88899998766666555 45888899 455544 2222 1 124678999999976655 455555544
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.09 E-value=0.0053 Score=65.68 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=113.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEE---E-------EEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLIT---D-------VRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~---~-------i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
+..|++++.++.|+-+|..+|+.+..+.... ..+. + +++ .+..|+.++.|+.|.-.|..+ ++.+-.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~T-Gk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKT-GKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCC-CCEEee
Confidence 4477777778899999999999888765321 1111 1 122 234677888899999999988 444332
Q ss_pred ecc--CC--CcEEE-EEEcCCCCeEEEEEe-----CCCcEEEEECCCCeeeEEEeCCe----------------------
Q 008393 368 FMG--HS--ASVMS-LDFHPNKDDLICSCD-----GDGEIRYWSINNGSCTRVFKGGT---------------------- 415 (567)
Q Consensus 368 ~~~--h~--~~V~~-l~~~p~~~~li~s~~-----~dg~I~iwd~~~~~~~~~~~~~~---------------------- 415 (567)
... +. ..+.+ ..+. + ..+++..+ .+|.|..+|.++++.+..+....
T Consensus 146 ~~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred cccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 221 11 11211 1111 2 33443222 26899999999999886643210
Q ss_pred -------------eEEEEecCCCEEEEEECC----------------CeEEEEECCCCeEEEEecCCCCCee--------
Q 008393 416 -------------AQMRFQPHLGRYLAAAAE----------------NVVSILDAETQACRLSLQGHTKPID-------- 458 (567)
Q Consensus 416 -------------~~~~~~~~~~~l~~~~~d----------------g~I~i~d~~~~~~~~~~~~h~~~V~-------- 458 (567)
..+.+.+..+.++++..+ ..|.-.|+++++.+..+......+.
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 123566777777777632 2688889999999888765222211
Q ss_pred -EEEEcCCCC---EEEEEeCC-eEEEEeCCCCCC
Q 008393 459 -SVCWDPSGE---LLASVSED-SVRVWTVGSGSE 487 (567)
Q Consensus 459 -~l~~sp~g~---~l~s~s~d-~I~iwd~~~~~~ 487 (567)
-+.+..+|+ .++.+..+ .+++.|-++++.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 122334666 77778888 999999988753
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00013 Score=77.06 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
+++++|+|..-.|+.|-.-|.+.+|...+.+.......|..+|..+.|+++|..|+++..-|.|.+|..+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 3469999998899999999999999998888888888999999999999999999999999999999877
No 349
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.03 E-value=3.8e-05 Score=78.75 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=65.0
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
.....|.|++++|+.+.|+.|+.||.|.+||...+... +....-..+.++|+|+|..|++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 56789999999999999999999999999998766333 33445668899999999999999999999999997533
No 350
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=0.0011 Score=61.31 Aligned_cols=149 Identities=14% Similarity=0.012 Sum_probs=109.7
Q ss_pred EEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE--eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC
Q 008393 378 LDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF--KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK 455 (567)
Q Consensus 378 l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~ 455 (567)
+...++.+.+++.|+..+.+.-.|..+|+.+..- ...+.+-+.- -++.++.++..|.+++.+.+++.....+..-..
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhh
Confidence 3344555678888888999999999998876543 2223222222 467899999999999999999988877765433
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
--......+++.++++++.| +.+..|.++. .++...+..+..+.+-++.+-...|+++...|.|.--..+..
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEeccccc---ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 22344567899999999999 9999999765 788888888888888888885555777777676655555554
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.98 E-value=0.0039 Score=61.03 Aligned_cols=214 Identities=15% Similarity=0.157 Sum_probs=122.1
Q ss_pred CCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE---------
Q 008393 339 PSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR--------- 409 (567)
Q Consensus 339 p~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~--------- 409 (567)
..++.|+.|+.+| |.++++.......... +...|..|...++-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence 3567899999999 9999994323333332 233499999998877666443 6999999987654333
Q ss_pred ------EEeC--CeeEEE--EecCCCEEEEEECCCeEEEEECCCC-----eEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 410 ------VFKG--GTAQMR--FQPHLGRYLAAAAENVVSILDAETQ-----ACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 410 ------~~~~--~~~~~~--~~~~~~~l~~~~~dg~I~i~d~~~~-----~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
.+.. ++...+ -...+...++++....|.+|..... +....+. -...+.+++|. ++.|+.+..
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~ 156 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS 156 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence 1111 222222 2245566677777778888877553 3444444 34778899998 567888877
Q ss_pred CeEEEEeCCCCCCCceEEEeecCC---------CceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCee
Q 008393 475 DSVRVWTVGSGSEGECVHELSCNG---------NKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIA 543 (567)
Q Consensus 475 d~I~iwd~~~~~~~~~i~~~~~~~---------~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~ 543 (567)
+...+.|+.++.. ..+....... .....+.--+++.+|++. +..-.+.|....... .+. -...+.
T Consensus 157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~-W~~~p~ 232 (275)
T PF00780_consen 157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQ-WSSAPQ 232 (275)
T ss_pred CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCCCCcCcccEEE-cCCchh
Confidence 7888999986533 2222111111 111222222334444432 333344444332221 122 123455
Q ss_pred EEEEecCCCEEEEEECCCcEEEcC
Q 008393 544 ALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 544 ~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
++++. ..||+..+.+ .|.||+
T Consensus 233 ~~~~~--~pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 233 SVAYS--SPYLIAFSSN-SIEVRS 253 (275)
T ss_pred EEEEE--CCEEEEECCC-EEEEEE
Confidence 66663 4577766654 477764
No 352
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0056 Score=60.37 Aligned_cols=216 Identities=11% Similarity=0.109 Sum_probs=128.6
Q ss_pred EEECCCCCeE-EEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe-
Q 008393 335 VRFSPSMPRL-ATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK- 412 (567)
Q Consensus 335 i~fsp~~~~l-~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~- 412 (567)
..|.++...| .+--..+.|.-|+..+... ..+. +...+.++.....+..|+ ++ +..+.+++.+++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g~Lv-~~--~~g~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGGRLI-AC--EHGVRLLDPDTGGKITLLAE 103 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCCeEE-EE--ccccEEEeccCCceeEEecc
Confidence 3566666644 4444577788888876333 2232 334445555544444444 54 4457777776665533322
Q ss_pred -------CCeeEEEEecCCCEEEEEEC-----------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 413 -------GGTAQMRFQPHLGRYLAAAA-----------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 413 -------~~~~~~~~~~~~~~l~~~~~-----------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
...+...+.|++...+..-. -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+..
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 12345677787655554333 134666665 45555566655566688999999988887776
Q ss_pred C--eEEEEeCCC--CCCC--ceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-eEEEEECCCCcEE-EeccccCCeeEEE
Q 008393 475 D--SVRVWTVGS--GSEG--ECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-SLELWNMSENKTM-TLTAHEGLIAALA 546 (567)
Q Consensus 475 d--~I~iwd~~~--~~~~--~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-~I~iwd~~~~~~~-~~~~h~~~V~~l~ 546 (567)
. .|..|++.. +... .....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus 183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence 5 777777752 2111 11222223345566778888898665555554 99999998 6665 4444447888899
Q ss_pred Ee-cCCCEEEEEE
Q 008393 547 VS-TETGYVASAS 558 (567)
Q Consensus 547 ~s-pdg~~l~s~s 558 (567)
|- ++.+.|+..+
T Consensus 262 FgG~~~~~L~iTs 274 (307)
T COG3386 262 FGGPDLNTLYITS 274 (307)
T ss_pred EeCCCcCEEEEEe
Confidence 84 4455544433
No 353
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.95 E-value=0.018 Score=56.30 Aligned_cols=221 Identities=16% Similarity=0.184 Sum_probs=123.4
Q ss_pred CCCCeEEEEeCCCcEEEEeCC-CCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE--------
Q 008393 297 SDGKLLATGGHDKKAVLWHTD-TLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT-------- 367 (567)
Q Consensus 297 ~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~-------- 367 (567)
..++.|+.|+.+| |.+++.. ..+...... ...|..+...++-+.|++-+ |+.++++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4577999999888 8999983 333333332 22399999999877777665 499999998752221100
Q ss_pred -----eccCCCcEEEEE--EcCCCCeEEEEEeCCCcEEEEECCCC-----eeeEEEe--CCeeEEEEecCCCEEEEEECC
Q 008393 368 -----FMGHSASVMSLD--FHPNKDDLICSCDGDGEIRYWSINNG-----SCTRVFK--GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 368 -----~~~h~~~V~~l~--~~p~~~~li~s~~~dg~I~iwd~~~~-----~~~~~~~--~~~~~~~~~~~~~~l~~~~~d 433 (567)
.......+...+ -...+...++. .....|.+|.+... +..+.+. .....+.|. ++.++++. .
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~ 156 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S 156 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence 111233444444 12233334433 33558888887653 3334443 455667776 55666665 5
Q ss_pred CeEEEEECCCCeEEEEecCC------------CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCce
Q 008393 434 NVVSILDAETQACRLSLQGH------------TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKF 501 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h------------~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i 501 (567)
+...++|+.++.....+... ..++..+.+ +++.+|++ .++.-.+.|.. |.... -..+.-. ...
T Consensus 157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~-G~~~r-~~~i~W~-~~p 231 (275)
T PF00780_consen 157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKN-GEPSR-KSTIQWS-SAP 231 (275)
T ss_pred CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCC-CCcCc-ccEEEcC-Cch
Confidence 55888899877554433211 123333333 34566654 33333333432 32212 1122212 233
Q ss_pred EEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 502 HSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 502 ~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..+++ ...||++.+. +.|.||++.+++.+
T Consensus 232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lv 260 (275)
T PF00780_consen 232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELV 260 (275)
T ss_pred hEEEE--ECCEEEEECC-CEEEEEECcCCcEE
Confidence 44455 3456776665 56999999999876
No 354
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.94 E-value=0.019 Score=59.54 Aligned_cols=190 Identities=14% Similarity=0.132 Sum_probs=102.2
Q ss_pred cEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCC-----ceeEEeccCCCcEEEEEEcCCC
Q 008393 310 KAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPG-----YSLRTFMGHSASVMSLDFHPNK 384 (567)
Q Consensus 310 ~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~~p~~ 384 (567)
.|.||+. .|+.+.++.-..+.|.++.|+.+. .|++...||.+++||+.... ..+....-....+....+..+|
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence 4889976 466677666555899999998854 66677789999999996422 0011111111222222333333
Q ss_pred CeEEEEEeCCCcEEEEECCCCe-eeEEE---eCCee----------EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 008393 385 DDLICSCDGDGEIRYWSINNGS-CTRVF---KGGTA----------QMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 385 ~~li~s~~~dg~I~iwd~~~~~-~~~~~---~~~~~----------~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
+++ -..++.|.+.+-.... ..+.+ ..... ...+..+....+....++.+.+.+....+. +
T Consensus 140 --ivv-Lt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i 213 (410)
T PF04841_consen 140 --IVV-LTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I 213 (410)
T ss_pred --EEE-ECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence 332 2334445444322221 11111 11000 012334444444455555555444332211 1
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecC-CCceEEEEEeCCCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCN-GNKFHSCVFHPTYP 511 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~-~~~i~~~~~sp~~~ 511 (567)
. ..+++..|++||+|++||.-..+ .+.+....-. +.+.++... ......+.|.-++.
T Consensus 214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence 1 23689999999999999999887 8877765332 344444443 34456667766543
No 355
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.92 E-value=0.0019 Score=64.81 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=114.8
Q ss_pred cEEEEEcCCCCceeEEecc-CCCcEEEEE---EcCC---CCeEEEEEeC----------CCcEEEEECCCC-----eee-
Q 008393 352 TVRVWDADNPGYSLRTFMG-HSASVMSLD---FHPN---KDDLICSCDG----------DGEIRYWSINNG-----SCT- 408 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~-h~~~V~~l~---~~p~---~~~li~s~~~----------dg~I~iwd~~~~-----~~~- 408 (567)
.|++.|..+ ...+..+.- ....+.+++ +..+ ...+++.|.. .|.|.++++... +..
T Consensus 3 ~i~l~d~~~-~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTT-FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTT-SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCC-CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 477777766 334333321 233444444 3322 1456655543 288999999984 222
Q ss_pred ---EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCe-EEEEec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 409 ---RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQA-CRLSLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 409 ---~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+++.+.+++.. +++ ++++.++.|.+|++...+ ....-. .....+.++... +++|+.|... .|.++.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~ 156 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRY 156 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEE
Confidence 2234556666544 566 555556899999988776 433222 122356666554 5688888766 7776654
Q ss_pred CCCCCCceEEEee--cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC-------Cc-EE---EeccccCCeeEE---E
Q 008393 483 GSGSEGECVHELS--CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE-------NK-TM---TLTAHEGLIAAL---A 546 (567)
Q Consensus 483 ~~~~~~~~i~~~~--~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~-------~~-~~---~~~~h~~~V~~l---~ 546 (567)
.... ..+..+. .....++++.|-.+++.++++..+|.|.++.... +. .+ ........|+++ .
T Consensus 157 ~~~~--~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~ 234 (321)
T PF03178_consen 157 DEEN--NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGS 234 (321)
T ss_dssp ETTT--E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--
T ss_pred EccC--CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEE
Confidence 4311 2222222 2345578888886667899999999999988763 22 22 222334567777 4
Q ss_pred Eec--CCC------EEEEEECCCcEEE
Q 008393 547 VST--ETG------YVASASHDKFVKL 565 (567)
Q Consensus 547 ~sp--dg~------~l~s~s~Dg~I~i 565 (567)
+.| .+. .++.++.+|.|.+
T Consensus 235 l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 235 LIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred eeecCCCCcccccceEEEEecCCEEEE
Confidence 445 222 3778889998863
No 356
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.84 E-value=0.013 Score=58.88 Aligned_cols=212 Identities=12% Similarity=0.144 Sum_probs=123.4
Q ss_pred CcEEEEeCCCCeeeeeecc-cCccEE---EEEECCC----CCeEEEEeC----------CCcEEEEEcCCC---CceeE-
Q 008393 309 KKAVLWHTDTLKSKTNLEE-HSSLIT---DVRFSPS----MPRLATSSF----------DKTVRVWDADNP---GYSLR- 366 (567)
Q Consensus 309 g~I~vwd~~~~~~~~~l~~-h~~~V~---~i~fsp~----~~~l~s~s~----------dg~I~iwd~~~~---~~~~~- 366 (567)
..|++.|..+.+.+.++.- ....+. .+.|..+ ..+|++|.. .|.|.++++... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3578888888877766542 222344 3444433 457777743 288999999873 11222
Q ss_pred -EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-eeEE--EeCCeeEEEEecCCCEEEEEECCCeEEEE--E
Q 008393 367 -TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CTRV--FKGGTAQMRFQPHLGRYLAAAAENVVSIL--D 440 (567)
Q Consensus 367 -~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~I~i~--d 440 (567)
.-....++|++|+-. +++++++. .+.|.+|++...+ .... +......+.....+++++++.....|.++ +
T Consensus 82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence 223457889999877 34455443 5899999998887 4433 33444555666667899999988877766 4
Q ss_pred CCCCeEEEEe-cCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCC-----C---CCceEEEeecCCCceEEE---EEe
Q 008393 441 AETQACRLSL-QGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSG-----S---EGECVHELSCNGNKFHSC---VFH 507 (567)
Q Consensus 441 ~~~~~~~~~~-~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~-----~---~~~~i~~~~~~~~~i~~~---~~s 507 (567)
....+....- ......+++++|-.+++.++++..+ .|.++..... . ....+..+. .+..++++ .+.
T Consensus 158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~ 236 (321)
T PF03178_consen 158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI 236 (321)
T ss_dssp TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence 4333222222 2234568889998666778878877 8888887631 1 112223333 24556666 444
Q ss_pred C--CCC------eEEEEEcCCeEEEE
Q 008393 508 P--TYP------SLLVIGCYQSLELW 525 (567)
Q Consensus 508 p--~~~------~l~~~~~dg~I~iw 525 (567)
| .+. .++.++.+|.|.+.
T Consensus 237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 237 PRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ecCCCCcccccceEEEEecCCEEEEE
Confidence 4 222 48888899988733
No 357
>PRK10115 protease 2; Provisional
Probab=97.76 E-value=0.11 Score=57.58 Aligned_cols=237 Identities=9% Similarity=0.017 Sum_probs=123.0
Q ss_pred CeEEEEEcCCCCeEEEEeC-----CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCC------CcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGH-----DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~-----dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~d------g~I~iwd 357 (567)
.+..+.++|||++|+.+.. ...|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|++|+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4557889999999887643 23688999988864332221221 458999998876665432 3588888
Q ss_pred cCCCC-ceeEEeccCCCcEE-EEEEcCCCCeEEEEEeC--CCcEEEEECC--CCeeeEEEeC-CeeEEEEecCCCEEEEE
Q 008393 358 ADNPG-YSLRTFMGHSASVM-SLDFHPNKDDLICSCDG--DGEIRYWSIN--NGSCTRVFKG-GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 358 ~~~~~-~~~~~~~~h~~~V~-~l~~~p~~~~li~s~~~--dg~I~iwd~~--~~~~~~~~~~-~~~~~~~~~~~~~l~~~ 430 (567)
+.++. .....+........ .+..+.++..+++.+.. ++.+.+|+.. .+.....+.. ......+...++.+++.
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~ 285 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLR 285 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEE
Confidence 88742 22233333333333 33334477766654433 4678998853 3332222221 11112222333555554
Q ss_pred ECC----CeEEEEECCC-CeEEEEecCC-C-CCeeEEEEcCCCCEEEEEeCC---eEEEEeCCCCCCCceEEEee-cCCC
Q 008393 431 AAE----NVVSILDAET-QACRLSLQGH-T-KPIDSVCWDPSGELLASVSED---SVRVWTVGSGSEGECVHELS-CNGN 499 (567)
Q Consensus 431 ~~d----g~I~i~d~~~-~~~~~~~~~h-~-~~V~~l~~sp~g~~l~s~s~d---~I~iwd~~~~~~~~~i~~~~-~~~~ 499 (567)
+.. ..|...++.. ++. ..+..+ . ..|..+.+.. +.++++...+ .+.+++...+ .+..+. ....
T Consensus 286 tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~ 359 (686)
T PRK10115 286 SNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPA 359 (686)
T ss_pred EcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCc
Confidence 442 2455555552 222 233334 3 3677788873 3455555544 4566665422 223332 1122
Q ss_pred ceEEEEEe--CCCCeE-EEEEcC---CeEEEEECCCCcEE
Q 008393 500 KFHSCVFH--PTYPSL-LVIGCY---QSLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~s--p~~~~l-~~~~~d---g~I~iwd~~~~~~~ 533 (567)
.+..+.++ +++..+ +..++. +.++.||+.+++..
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~ 399 (686)
T PRK10115 360 YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR 399 (686)
T ss_pred eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence 23333344 444433 333332 58999999877643
No 358
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.016 Score=60.10 Aligned_cols=187 Identities=7% Similarity=0.096 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC-----CeeEE-E---Eec
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG-----GTAQM-R---FQP 422 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~-----~~~~~-~---~~~ 422 (567)
.|.||+... ..+..+.-..+.|.++.|..+ ..|+ .-..||.+++||+.... ...+.. .+... . +..
T Consensus 62 ~I~iys~sG--~ll~~i~w~~~~iv~~~wt~~-e~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSG--KLLSSIPWDSGRIVGMGWTDD-EELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCC--CEeEEEEECCCCEEEEEECCC-CeEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence 377887763 344443333388999999876 4565 45679999999987433 111111 11111 1 112
Q ss_pred CCCEEEEEECCCeEEEEECCCCe-EEEEec---CCCC------Cee-EEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCce
Q 008393 423 HLGRYLAAAAENVVSILDAETQA-CRLSLQ---GHTK------PID-SVCWDPSGELLASVSED-SVRVWTVGSGSEGEC 490 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~-~~~~~~---~h~~------~V~-~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~ 490 (567)
..+ +++-..++.+.+.+-.... ....+. .... .+. ...++.+....+....+ .+.+.+-...
T Consensus 137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~----- 210 (410)
T PF04841_consen 137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF----- 210 (410)
T ss_pred CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence 223 4444555555555433322 111111 1000 000 02234444444444444 5554433211
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-cccCCeeEEEEecCC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-AHEGLIAALAVSTET 551 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-~h~~~V~~l~~spdg 551 (567)
..+. ..+++..+++||++++|+....+|.+.+....-.+.+ .+. .-......+.|.-+.
T Consensus 211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 0111 2468999999999999999999999999876655544 222 223456677776544
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.76 E-value=0.0097 Score=59.45 Aligned_cols=240 Identities=13% Similarity=0.129 Sum_probs=118.1
Q ss_pred eCCCCeeeeeecccCccEEEE-----EECCCCCeEEEEeC-CCc--EEEEEcCCCCceeEEeccCC-CcEEEEEEcCCCC
Q 008393 315 HTDTLKSKTNLEEHSSLITDV-----RFSPSMPRLATSSF-DKT--VRVWDADNPGYSLRTFMGHS-ASVMSLDFHPNKD 385 (567)
Q Consensus 315 d~~~~~~~~~l~~h~~~V~~i-----~fsp~~~~l~s~s~-dg~--I~iwd~~~~~~~~~~~~~h~-~~V~~l~~~p~~~ 385 (567)
|..||..+..|..+......+ +|.++|+.|+.++. ||. +.+.|+.+ + .+..+.... .......++++++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t-~-~i~QLTdg~g~~~~g~~~s~~~~ 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT-G-EITQLTDGPGDNTFGGFLSPDDR 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS-B-TTT-EE-TTSS
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEccc-C-EEEECccCCCCCccceEEecCCC
Confidence 556777777776544433333 56778876655554 554 56667765 3 344444433 2222466678877
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC--Cee-EEEEe-cCCCEEEEEEC-----------------------CCeEEE
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG--GTA-QMRFQ-PHLGRYLAAAA-----------------------ENVVSI 438 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~-~~~~~-~~~~~l~~~~~-----------------------dg~I~i 438 (567)
.+++.. ....|+..|+.+.+....+.. .-. ...|. ..+...+++.. ...|..
T Consensus 94 ~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 94 ALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred eEEEEE-CCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 766543 456899999999876555443 222 23343 22233344332 135677
Q ss_pred EECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC---e--EEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCC
Q 008393 439 LDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED---S--VRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYP 511 (567)
Q Consensus 439 ~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d---~--I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~ 511 (567)
.|+.+++....+. ....+..+-|+| |..+|+.|-++ . -|||-+++.. ....+..- .....+..=-|.+||.
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~-~~~e~~gHEfw~~DG~ 250 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRR-MEGESVGHEFWVPDGS 250 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecC-CCCcccccccccCCCC
Confidence 7888887665555 456788899999 45577777655 3 3788776532 22233222 1233444557999998
Q ss_pred eEEEEEc-----CCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 512 SLLVIGC-----YQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 512 ~l~~~~~-----dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.|..-+. +..|.-+|+.+++...+.. ......+..++||+++|-=|.|
T Consensus 251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~-~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME-MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-TTT--EEEEEE-E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEEEEeecCCCCceEEEeeCCCCCCceEEEe-CCceeeeEEcCCCCEEEecCCC
Confidence 7766433 3367788888886553322 2234456668899887754444
No 360
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.76 E-value=0.024 Score=59.13 Aligned_cols=218 Identities=13% Similarity=0.109 Sum_probs=121.8
Q ss_pred EEEEEECCCCCeEEEE-eCCC----cEEEEEcCCCCceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCC----------C
Q 008393 332 ITDVRFSPSMPRLATS-SFDK----TVRVWDADNPGYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGD----------G 395 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~-s~dg----~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~d----------g 395 (567)
+..+.++|++++||.+ +..| .|+++|+++ +..+. .+... ....+.|.+++..++++...+ .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-g~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-GKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-TEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-CcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 4467899999988766 3344 499999998 44333 22221 122399999988888776443 2
Q ss_pred cEEEEECCCCeee--EEEeC--C---eeEEEEecCCCEEEEEEC---C-CeEEEEECCCC-----eEEEEecCCCCCeeE
Q 008393 396 EIRYWSINNGSCT--RVFKG--G---TAQMRFQPHLGRYLAAAA---E-NVVSILDAETQ-----ACRLSLQGHTKPIDS 459 (567)
Q Consensus 396 ~I~iwd~~~~~~~--~~~~~--~---~~~~~~~~~~~~l~~~~~---d-g~I~i~d~~~~-----~~~~~~~~h~~~V~~ 459 (567)
.|+.|.+.+.... ..+.. . ...+..+.++..+++... + ..+++.|+..+ ..........+....
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788888876432 34432 2 346778899888776554 3 46888898874 333333323333333
Q ss_pred EEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC---eEEEEECC-CCc
Q 008393 460 VCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ---SLELWNMS-ENK 531 (567)
Q Consensus 460 l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg---~I~iwd~~-~~~ 531 (567)
+... .+.+++....+ .|...++...........+..+...+.-..+...+.+|++...++ .|++|++. +..
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~ 361 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE 361 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence 4443 44444444433 466667765543223335555555433344455555666655443 79999999 554
Q ss_pred EEEecc-ccCCeeEEEEecCCCE
Q 008393 532 TMTLTA-HEGLIAALAVSTETGY 553 (567)
Q Consensus 532 ~~~~~~-h~~~V~~l~~spdg~~ 553 (567)
...+.. -.+.|..+...+++..
T Consensus 362 ~~~~~~p~~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 362 SREIPLPEAGSVSGVSGDFDSDE 384 (414)
T ss_dssp EEEEESSSSSEEEEEES-TT-SE
T ss_pred EeeecCCcceEEeccCCCCCCCE
Confidence 443332 2334555554455543
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.73 E-value=0.0042 Score=63.61 Aligned_cols=204 Identities=14% Similarity=0.119 Sum_probs=119.7
Q ss_pred ceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeee--cc------cCccEEEEEECC-----CC--
Q 008393 277 FKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNL--EE------HSSLITDVRFSP-----SM-- 341 (567)
Q Consensus 277 ~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l--~~------h~~~V~~i~fsp-----~~-- 341 (567)
|.....++...++|++++.|.-| ++|.|..+|.+.|.|++....+..- .. ....|+++.|.- |+
T Consensus 76 f~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 76 FLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp EEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred cCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 66777788889999999998655 9999999999999999877777652 22 345688888852 33
Q ss_pred -CeEEEEeCCCcEEEEEcCC--CC-ce---eEEeccCCCcEEEEE-EcCC--------------------CCeEEEEEeC
Q 008393 342 -PRLATSSFDKTVRVWDADN--PG-YS---LRTFMGHSASVMSLD-FHPN--------------------KDDLICSCDG 393 (567)
Q Consensus 342 -~~l~s~s~dg~I~iwd~~~--~~-~~---~~~~~~h~~~V~~l~-~~p~--------------------~~~li~s~~~ 393 (567)
-+|++|...|.+.+|.+.- .+ .. ......+.+.|..|. |..+ -+.+++.++
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS- 233 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS- 233 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-
Confidence 3789999999999998751 11 11 112224667777666 3222 022443444
Q ss_pred CCcEEEEECCCCeeeEEEeCC-ee--EEEEe-----cCCCEEEEEECCCeEEEEECCCCeEEEEecCCC----CCeeEEE
Q 008393 394 DGEIRYWSINNGSCTRVFKGG-TA--QMRFQ-----PHLGRYLAAAAENVVSILDAETQACRLSLQGHT----KPIDSVC 461 (567)
Q Consensus 394 dg~I~iwd~~~~~~~~~~~~~-~~--~~~~~-----~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~----~~V~~l~ 461 (567)
+..|+++...+.+........ .. .+.+- ..+..|++...+|.|++|.+-..+.+..+.-.. ..+...+
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ss 313 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSS 313 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-E
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccE
Confidence 788999999987766543332 22 22332 245567778889999999999988887776532 2345677
Q ss_pred EcCCCCEEEEEeCCeEEEEeC
Q 008393 462 WDPSGELLASVSEDSVRVWTV 482 (567)
Q Consensus 462 ~sp~g~~l~s~s~d~I~iwd~ 482 (567)
++++|..++-.+...+.++.+
T Consensus 314 is~~Gdi~~~~gpsE~~l~sv 334 (395)
T PF08596_consen 314 ISRNGDIFYWTGPSEIQLFSV 334 (395)
T ss_dssp E-TTS-EEEE-SSSEEEEEEE
T ss_pred ECCCCCEEEEeCcccEEEEEE
Confidence 899999888887765444443
No 362
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.71 E-value=0.061 Score=57.65 Aligned_cols=145 Identities=12% Similarity=0.078 Sum_probs=85.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCeeeeeeccc--C--ccEEE-EEECCCCCeEEEEe------CCCcEEEEEcCCCCceeEEe
Q 008393 300 KLLATGGHDKKAVLWHTDTLKSKTNLEEH--S--SLITD-VRFSPSMPRLATSS------FDKTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~--~~V~~-i~fsp~~~~l~s~s------~dg~I~iwd~~~~~~~~~~~ 368 (567)
..++.++.|+.|..+|.++|+.+...... . ..+++ .... ++ .|+++. .+|.|..+|.+++....+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 46677888999999999999998776531 1 11111 1111 33 455543 26889999988743322211
Q ss_pred ccC------------------------------CCcEE-EEEEcCCCCeEEEEEe-C----CC-----------cEEEEE
Q 008393 369 MGH------------------------------SASVM-SLDFHPNKDDLICSCD-G----DG-----------EIRYWS 401 (567)
Q Consensus 369 ~~h------------------------------~~~V~-~l~~~p~~~~li~s~~-~----dg-----------~I~iwd 401 (567)
... ...+. .+.+.+..+.++ .+. . ++ .|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy-~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIY-FGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEE-EeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 110 01111 346666544343 333 1 12 678889
Q ss_pred CCCCeeeEEEeCC----------eeEE--EEecCCC---EEEEEECCCeEEEEECCCCeEE
Q 008393 402 INNGSCTRVFKGG----------TAQM--RFQPHLG---RYLAAAAENVVSILDAETQACR 447 (567)
Q Consensus 402 ~~~~~~~~~~~~~----------~~~~--~~~~~~~---~l~~~~~dg~I~i~d~~~~~~~ 447 (567)
+++++....|... ...+ .+..++. .++.+..+|.++++|.++++.+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 9999988776531 1112 2324554 4557777999999999999886
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00018 Score=74.07 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=79.4
Q ss_pred ccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEE-EEEECCCCCeEEEEeCCCcEEEEEcCCCC
Q 008393 284 RASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLIT-DVRFSPSMPRLATSSFDKTVRVWDADNPG 362 (567)
Q Consensus 284 ~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~-~i~fsp~~~~l~s~s~dg~I~iwd~~~~~ 362 (567)
..-...|.-+.|+|.-.++|++..+|.|.++.+. ...+.++..|...++ +++|.|||+.||+|-.||+|++.|++++.
T Consensus 17 ~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 17 MSLPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred hccccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 3345677889999999999999999999999987 788888887887787 99999999999999999999999999855
Q ss_pred ceeEEeccCCCcEEEEEEc
Q 008393 363 YSLRTFMGHSASVMSLDFH 381 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~ 381 (567)
........-...|.++-|.
T Consensus 96 ~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ceeccccccccchheeecc
Confidence 4333223344567777775
No 364
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.67 E-value=1.4e-05 Score=81.97 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=130.2
Q ss_pred ccEEEEEECCCC--CeEEEEeCCCcEEEEEcCCCCce-eEEeccCCCcEEEEEEcCCCCeEEEEEe----CCCcEEEEEC
Q 008393 330 SLITDVRFSPSM--PRLATSSFDKTVRVWDADNPGYS-LRTFMGHSASVMSLDFHPNKDDLICSCD----GDGEIRYWSI 402 (567)
Q Consensus 330 ~~V~~i~fsp~~--~~l~s~s~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~~p~~~~li~s~~----~dg~I~iwd~ 402 (567)
..+.|+++.-+. ..++.|..+|.|.+-.+...... .....++....++++|.+-...+++.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 346666665433 47888999999999988764433 4556678889999999987666675553 3668999999
Q ss_pred CCCe--ee--EEE----eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEe
Q 008393 403 NNGS--CT--RVF----KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 403 ~~~~--~~--~~~----~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s 473 (567)
.++- .. ..| ..+...++|..+...+++|.....+.++|++........ -.+..+..+.++| .++|+++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnTk~vqG~tVdp~~~nY~cs~~ 215 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNTKYVQGITVDPFSPNYFCSNS 215 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhhhhcccceecCCCCCceeccc
Confidence 9872 11 112 124567888877778888888899999999843211111 1234567788888 888998888
Q ss_pred CCeEEEEeC-CCCCCCceEEEeecCC----CceEEEEEeCCCCe-EEEEEcC-CeEEEEECCC
Q 008393 474 EDSVRVWTV-GSGSEGECVHELSCNG----NKFHSCVFHPTYPS-LLVIGCY-QSLELWNMSE 529 (567)
Q Consensus 474 ~d~I~iwd~-~~~~~~~~i~~~~~~~----~~i~~~~~sp~~~~-l~~~~~d-g~I~iwd~~~ 529 (567)
++.|.+||. +.-+ ..+..+.... ..+..++|.|...- +++...| ++|++||+..
T Consensus 216 dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 216 DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 779999993 3221 1111111122 24788899996543 4444444 5899998853
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.60 E-value=0.0083 Score=64.78 Aligned_cols=207 Identities=16% Similarity=0.192 Sum_probs=114.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEe------CCC--cEEEEEcCCCCceeEEeccCCCcEEEEE
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSS------FDK--TVRVWDADNPGYSLRTFMGHSASVMSLD 379 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 379 (567)
+|.+.-.+-.....+.-..+....+...+++|+|+.++..- .|. .|.+++.. +.......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecCC--CCCCce
Confidence 55554443222222222223334688999999999887665 244 45555543 3222223332 377889
Q ss_pred EcCCCCeEEEEEe-----------CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE---EECCCCe
Q 008393 380 FHPNKDDLICSCD-----------GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI---LDAETQA 445 (567)
Q Consensus 380 ~~p~~~~li~s~~-----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i---~d~~~~~ 445 (567)
|+|+|..+.+... ..+.+.+.++..+.....+.+.+..+.|+|++.+++... ++.|++ .....++
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999776554432 223455556655554445567899999999999988877 467777 4444554
Q ss_pred EEE----Eec-CCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeec--CCCceEEEEEeCCCCeEEEEE
Q 008393 446 CRL----SLQ-GHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSC--NGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 446 ~~~----~~~-~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~--~~~~i~~~~~sp~~~~l~~~~ 517 (567)
... .+. +-...+.++.|..++.+++ +..+ ...+|.+.-....... +.. ....+..++-++. .|++..
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V-~~~~~~~~v~~v~vDG~~~~~--~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRTGDSLVV-GRSDPEHPVWYVNLDGSNSDA--LPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred eeecccEEeecccCCccccceEecCCEEEE-EecCCCCceEEEecCCccccc--cCCCCccCceEEEecCCc--eEEEEc
Confidence 111 122 2233468899999998664 4444 3334444322111111 111 1344555555552 466666
Q ss_pred cCCeEEE
Q 008393 518 CYQSLEL 524 (567)
Q Consensus 518 ~dg~I~i 524 (567)
.++.+.+
T Consensus 558 ~~g~~~l 564 (591)
T PRK13616 558 ARAVLQL 564 (591)
T ss_pred CCceEEe
Confidence 6664444
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.014 Score=54.94 Aligned_cols=248 Identities=15% Similarity=0.129 Sum_probs=140.7
Q ss_pred EEEEcCCC-CeEEEEeCCCc-EEEEeCCCCeeeeeecccCc--cEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCC
Q 008393 292 CCHFSSDG-KLLATGGHDKK-AVLWHTDTLKSKTNLEEHSS--LITDVRFSPSMPRLATSSFD-----KTVRVWDADNPG 362 (567)
Q Consensus 292 ~l~~s~dg-~~lasg~~dg~-I~vwd~~~~~~~~~l~~h~~--~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~ 362 (567)
.|+|+|.. .-++.+-.-|+ ..++|........++...++ .--.=.|++||.+|+..-.| |.|-|||.+..-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 57777754 34455544443 56788877766655432111 11123799999999876443 789999999766
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEE-ECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYW-SINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
..+-.+..|.-....+.|.+||..+++. +|-|... |... ..+-.-+..-.+.+.|.
T Consensus 152 qrvgE~~t~GiGpHev~lm~DGrtlvva---nGGIethpdfgR--------------------~~lNldsMePSlvlld~ 208 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLMADGRTLVVA---NGGIETHPDFGR--------------------TELNLDSMEPSLVLLDA 208 (366)
T ss_pred ceecccccCCcCcceeEEecCCcEEEEe---CCceecccccCc--------------------cccchhhcCccEEEEec
Confidence 6677788888888899999999866644 4445544 2211 01112233445556666
Q ss_pred CCCeEEEEe--c--CCCCCeeEEEEcCCCCEEEEEeC-----C-eEEEEeCCCCCCCceEE----EeecCCCceEEEEEe
Q 008393 442 ETQACRLSL--Q--GHTKPIDSVCWDPSGELLASVSE-----D-SVRVWTVGSGSEGECVH----ELSCNGNKFHSCVFH 507 (567)
Q Consensus 442 ~~~~~~~~~--~--~h~~~V~~l~~sp~g~~l~s~s~-----d-~I~iwd~~~~~~~~~i~----~~~~~~~~i~~~~~s 507 (567)
.++..+.+. . .+.-.|..++..+||..++.+-. | --.+=-...++..+.+. ....-...|-+++.+
T Consensus 209 atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n 288 (366)
T COG3490 209 ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAAN 288 (366)
T ss_pred cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeec
Confidence 666554332 2 24456888899999887765532 1 11111111121111110 001113446677888
Q ss_pred CCCCeEEEEEcCC-eEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 508 PTYPSLLVIGCYQ-SLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 508 p~~~~l~~~~~dg-~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+..+++..+-.| ...+||..++..+....-.. +..++- ...-++..+.+|.+.+
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~d-aaGva~--~~~gf~vssg~G~~~~ 344 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAALPD-AAGVAA--AKGGFAVSSGQGRIIF 344 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEecccccc-ccccee--ccCceEEecCCceEEe
Confidence 7777777766655 77899999999885443222 222222 2222444444566654
No 367
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.59 E-value=0.009 Score=65.57 Aligned_cols=132 Identities=9% Similarity=0.109 Sum_probs=93.0
Q ss_pred eCCCcEEEEEcCCCCceeEEeccCCCc-EEEEEEcC-----CCCeEEEEEeCCCcEEEEECCCCe--eeE----EEe--C
Q 008393 348 SFDKTVRVWDADNPGYSLRTFMGHSAS-VMSLDFHP-----NKDDLICSCDGDGEIRYWSINNGS--CTR----VFK--G 413 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~~p-----~~~~li~s~~~dg~I~iwd~~~~~--~~~----~~~--~ 413 (567)
.....|+-.|++. ++.+..+..|... |..++-.. .....+ .|-.++.+..||.+-.. ++. .+. .
T Consensus 501 ~~~~~ly~mDLe~-GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tf-lGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~ 578 (794)
T PF08553_consen 501 NNPNKLYKMDLER-GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTF-LGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKN 578 (794)
T ss_pred CCCCceEEEecCC-CcEEEEeecCCCcceeEecccccccccCCCceE-EEECCCceEEeccCCCCCceeeccccccccCC
Confidence 3457799999998 7888888877654 55544321 112233 67789999999998643 221 111 1
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTV 482 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~ 482 (567)
...+++ ....+++++|+.+|.|++||--..+....+.+-..+|..|+.+.||+||++.+...|.+++.
T Consensus 579 ~Fs~~a-Tt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFA-TTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CceEEE-ecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 233443 34458999999999999999544444445666778999999999999999988888888876
No 368
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.57 E-value=0.017 Score=62.34 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEe-----CC--CcEEEEECCCCeeeEEEeC-CeeEEEEe
Q 008393 350 DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCD-----GD--GEIRYWSINNGSCTRVFKG-GTAQMRFQ 421 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-----~d--g~I~iwd~~~~~~~~~~~~-~~~~~~~~ 421 (567)
+|.+.-.+-.. ...+.-..+....+.+.+++|+|..++++.. .| ..|.+++... .......+ ....-.|+
T Consensus 328 ~G~l~~~~~~~-~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g~~~t~PsWs 405 (591)
T PRK13616 328 DGSLVSVDGQG-VTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEGHSLTRPSWS 405 (591)
T ss_pred CCeEEEecCCC-eeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecCCCCCCceEC
Confidence 66555443222 1222222233346788999999998887762 23 3566666533 22222222 35667899
Q ss_pred cCCCEEEEEECC------------CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEE---EeCCCCC
Q 008393 422 PHLGRYLAAAAE------------NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRV---WTVGSGS 486 (567)
Q Consensus 422 ~~~~~l~~~~~d------------g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~i---wd~~~~~ 486 (567)
|+++.+.+.... +.+.+.+++.++... .....|..+.|+|||..|+....+.|++ -....+.
T Consensus 406 pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 406 LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ 482 (591)
T ss_pred CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc
Confidence 998877666432 234444444443322 2346799999999999998887666666 3322331
Q ss_pred CCce--EEEeec-CCCceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEEEecc--ccCCeeEEEEecCCCEEEEEEC
Q 008393 487 EGEC--VHELSC-NGNKFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTMTLTA--HEGLIAALAVSTETGYVASASH 559 (567)
Q Consensus 487 ~~~~--i~~~~~-~~~~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~~~~~--h~~~V~~l~~spdg~~l~s~s~ 559 (567)
... ...+.. ....+..+.|..++.. +++..++ .++..++.......+.. ....+.+|+-++. .|+....
T Consensus 483 -~~l~~~~~l~~~l~~~~~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~ 558 (591)
T PRK13616 483 -YALTNPREVGPGLGDTAVSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDA 558 (591)
T ss_pred -eeecccEEeecccCCccccceEecCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcC
Confidence 111 122222 2333578899999984 4555544 35555555433222222 3566777777663 3445555
Q ss_pred CCcEE
Q 008393 560 DKFVK 564 (567)
Q Consensus 560 Dg~I~ 564 (567)
+|.+.
T Consensus 559 ~g~~~ 563 (591)
T PRK13616 559 RAVLQ 563 (591)
T ss_pred CceEE
Confidence 66443
No 369
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.024 Score=55.93 Aligned_cols=183 Identities=16% Similarity=0.062 Sum_probs=113.6
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecc-----cCccEEEEEECCCCCeEEEEeC---------CCcEEE
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRV 355 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~-----h~~~V~~i~fsp~~~~l~s~s~---------dg~I~i 355 (567)
+.++..-.++..|+++ +.-+.+++.+++..+..+.. .....+.+...|+|.+.++... ...-.|
T Consensus 68 ~~~~~~~d~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~l 145 (307)
T COG3386 68 FSSGALIDAGGRLIAC--EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSL 145 (307)
T ss_pred cccceeecCCCeEEEE--ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceE
Confidence 3444444444455555 34566677666655333321 1234567888899877665444 111245
Q ss_pred EEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC--C----eeeEEE----eCCeeEEEEecCCC
Q 008393 356 WDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN--G----SCTRVF----KGGTAQMRFQPHLG 425 (567)
Q Consensus 356 wd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~--~----~~~~~~----~~~~~~~~~~~~~~ 425 (567)
|-++..+..++.+..+-..-+.|+|+||++.++++=+..+.|..|++.. + +....+ .+..-.++...++.
T Consensus 146 yr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 146 YRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred EEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 5555335556666666666788999999998887777778999998863 1 111111 13344567777777
Q ss_pred EEEEEECCC-eEEEEECCCCeEEEEecCCCCCeeEEEEcC-CCCEEEEEeCC
Q 008393 426 RYLAAAAEN-VVSILDAETQACRLSLQGHTKPIDSVCWDP-SGELLASVSED 475 (567)
Q Consensus 426 ~l~~~~~dg-~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp-~g~~l~s~s~d 475 (567)
..+++...| .|.+|+.. ++.+..+......+++++|-- +.+.|+..+..
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 765555554 99999999 888888887767788888853 44555544433
No 370
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.52 E-value=0.09 Score=49.96 Aligned_cols=183 Identities=13% Similarity=0.092 Sum_probs=117.8
Q ss_pred cEEEEEECCCCCeEEEEeCCC--cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee
Q 008393 331 LITDVRFSPSMPRLATSSFDK--TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT 408 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~ 408 (567)
..-.+.|..++.++-+.+.-| .|+.+|+.++.......-.....-..|+... +.++.-.-.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCeEEEEccccceEE
Confidence 345677767777777777665 6899999984332222222333444566653 456666678999999999999988
Q ss_pred EEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCC-----CCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 409 RVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGH-----TKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h-----~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
..+.-....--+..++..++.......|+++|..+.+....+.-. -..++.+.|- +|.+.|-.-.. .|...|.
T Consensus 124 ~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp 202 (264)
T PF05096_consen 124 GTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDP 202 (264)
T ss_dssp EEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred EEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeC
Confidence 887654333333367788999989999999999988776665432 2346667775 67766666555 8999999
Q ss_pred CCCCCCceEEEee---------------cCCCceEEEEEeCCCCeEEEEEcC
Q 008393 483 GSGSEGECVHELS---------------CNGNKFHSCVFHPTYPSLLVIGCY 519 (567)
Q Consensus 483 ~~~~~~~~i~~~~---------------~~~~~i~~~~~sp~~~~l~~~~~d 519 (567)
.+| ..+..+. ....-.+.+++.|....|++.|..
T Consensus 203 ~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 203 ETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp TT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred CCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 887 4443332 113458899999998888887764
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.50 E-value=0.043 Score=50.28 Aligned_cols=203 Identities=10% Similarity=0.098 Sum_probs=109.7
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcC-CCC-eEEEEEeCCCcEEEEECCC--CeeeEEEe------
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHP-NKD-DLICSCDGDGEIRYWSINN--GSCTRVFK------ 412 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p-~~~-~li~s~~~dg~I~iwd~~~--~~~~~~~~------ 412 (567)
++.+--..|.|.-||+.........+.+.. +.++.+-- ++. .+.+.++..-.|.-||... ....+++.
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~ 106 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR 106 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence 444444566787899886333333333322 22333321 222 3444555444556677432 22223211
Q ss_pred --CCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC--------CCeeEEEEcCCCCEEEEE-eCC-eEEEE
Q 008393 413 --GGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT--------KPIDSVCWDPSGELLASV-SED-SVRVW 480 (567)
Q Consensus 413 --~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~--------~~V~~l~~sp~g~~l~s~-s~d-~I~iw 480 (567)
...+.-..+|++.+ +.+.....=..+....++...-+.+|. .--+.++|+.+.+.++.. +.+ .|.-|
T Consensus 107 kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 107 KKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred HhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 12233456777655 555542211122222333333333332 223568899887766655 455 78778
Q ss_pred e--CCCCC--CCceEEEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEe
Q 008393 481 T--VGSGS--EGECVHELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVS 548 (567)
Q Consensus 481 d--~~~~~--~~~~i~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~s 548 (567)
| ..++. ..+.+..+... .-..-.+++..+|+..++.-..++|..+|..+++.+ ++.-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 8 55553 23344444321 111234456778887777777889999999999988 566667889999995
No 372
>PRK10115 protease 2; Provisional
Probab=97.49 E-value=0.2 Score=55.68 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=103.4
Q ss_pred ccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC-----CcEEE
Q 008393 330 SLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD-----GEIRY 399 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d-----g~I~i 399 (567)
-.+..+.|+|++++|+.+... ..|++.|+.++......+.+ . -..++|.++++.++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-V--EPSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-c--ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 346778899999988776432 35888899873322222222 1 14699999998888776533 46888
Q ss_pred EECCCC--eeeEEEeC--C-eeEEEE-ecCCCEEEEEEC---CCeEEEEECC--CCeEEEEecCCCCCeeEEEEcCCCCE
Q 008393 400 WSINNG--SCTRVFKG--G-TAQMRF-QPHLGRYLAAAA---ENVVSILDAE--TQACRLSLQGHTKPIDSVCWDPSGEL 468 (567)
Q Consensus 400 wd~~~~--~~~~~~~~--~-~~~~~~-~~~~~~l~~~~~---dg~I~i~d~~--~~~~~~~~~~h~~~V~~l~~sp~g~~ 468 (567)
+++.++ +....+.. . .....+ +.++..+++.+. ++.+.+++.. ++.....+.........+. +..+.+
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l 282 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF 282 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence 899888 43444443 2 221223 336666665544 4578888843 3332222222222222222 223333
Q ss_pred EEEEeCC--eEEEE--eCCCCCCCceEEEeecC--CCceEEEEEeCCCCeEEEE-EcCC--eEEEEECCCCcEEEe
Q 008393 469 LASVSED--SVRVW--TVGSGSEGECVHELSCN--GNKFHSCVFHPTYPSLLVI-GCYQ--SLELWNMSENKTMTL 535 (567)
Q Consensus 469 l~s~s~d--~I~iw--d~~~~~~~~~i~~~~~~--~~~i~~~~~sp~~~~l~~~-~~dg--~I~iwd~~~~~~~~~ 535 (567)
++....+ ..+|+ ++... .....+..+ ...+..+.+. +++|++. ..++ .|++++..++....+
T Consensus 283 y~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 283 YLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 3333322 34444 44321 112233333 2357777776 3345444 4455 566667655444433
No 373
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.46 E-value=0.057 Score=55.28 Aligned_cols=88 Identities=20% Similarity=0.344 Sum_probs=58.5
Q ss_pred EEEEcCCCCeEEEEeCCCcEEE---EeCC-----CCeeeeeec----cc-CccEEEEEECC-----------CCCeEEEE
Q 008393 292 CCHFSSDGKLLATGGHDKKAVL---WHTD-----TLKSKTNLE----EH-SSLITDVRFSP-----------SMPRLATS 347 (567)
Q Consensus 292 ~l~~s~dg~~lasg~~dg~I~v---wd~~-----~~~~~~~l~----~h-~~~V~~i~fsp-----------~~~~l~s~ 347 (567)
+++.+|++++||.+..+..+.+ |+.. ......... .. .+.|+++.|-| |...|++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 5788999999999987776665 5431 111222211 11 15677777643 45689999
Q ss_pred eCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEc
Q 008393 348 SFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFH 381 (567)
Q Consensus 348 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~ 381 (567)
..+|.|++|... +..+..-.-|..+|..|.+.
T Consensus 86 ~ssG~vrfyte~--G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTEN--GVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEecc--chHHHHHhcCccceEEEEec
Confidence 999999999985 44444444577788877764
No 374
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.44 E-value=0.0029 Score=69.24 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=88.2
Q ss_pred CCeEEEEECCCCeEEEEecCCCCC-eeEEEEcC------CCCEEEEEeCCeEEEEeCCCCCCCceEE-Ee--ecCCCceE
Q 008393 433 ENVVSILDAETQACRLSLQGHTKP-IDSVCWDP------SGELLASVSEDSVRVWTVGSGSEGECVH-EL--SCNGNKFH 502 (567)
Q Consensus 433 dg~I~i~d~~~~~~~~~~~~h~~~-V~~l~~sp------~g~~l~s~s~d~I~iwd~~~~~~~~~i~-~~--~~~~~~i~ 502 (567)
.+.|+-.|++.|+.+..+..|... |..++-.. ....++..+.+.|..||.+-.. .+++. .. -.....+.
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~-~k~v~~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG-NKLVDSQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC-CceeeccccccccCCCce
Confidence 578999999999999999987654 55554221 1234444444499999998643 22331 11 12355677
Q ss_pred EEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 503 SCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 503 ~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
|++-+.+| +|++|+.+|.|++||--..... .+.+...+|..|..+.||++|+..+..
T Consensus 582 ~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t 639 (794)
T PF08553_consen 582 CFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT 639 (794)
T ss_pred EEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc
Confidence 77777777 4999999999999995332222 566778999999999999998766644
No 375
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.007 Score=61.51 Aligned_cols=137 Identities=13% Similarity=0.125 Sum_probs=93.3
Q ss_pred ecCCCEEEEE-ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCC--------EEEEEeCCeEEEEeCCCCCCCceE
Q 008393 421 QPHLGRYLAA-AAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGE--------LLASVSEDSVRVWTVGSGSEGECV 491 (567)
Q Consensus 421 ~~~~~~l~~~-~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~--------~l~s~s~d~I~iwd~~~~~~~~~i 491 (567)
..+.+.++.. .....++-.|++.|+.+..++-+.. |.-+.+.|+.+ .|+.-+...|.-||.+-.... .+
T Consensus 342 ~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl 419 (644)
T KOG2395|consen 342 RADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KL 419 (644)
T ss_pred ccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-ee
Confidence 3344444443 3357899999999999999887766 77777877654 344333448999999853321 22
Q ss_pred EEeecC----CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcE-EEeccccCCeeEEEEecCCCEEEEEECC
Q 008393 492 HELSCN----GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKT-MTLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 492 ~~~~~~----~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~-~~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
.....+ ...+.|++-..+| +|++|+.+|.|++||--.... ..+.+...+|..+..+.+|++|+..+..
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred eeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 222222 3345555555555 699999999999999732222 2677888999999999999998766543
No 376
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.40 E-value=0.068 Score=55.52 Aligned_cols=119 Identities=10% Similarity=0.073 Sum_probs=82.2
Q ss_pred CCCeEEEEEcCCC----CeEEEEeCCCcEEEEeCC-----CCeeeeeec-ccCc--c--EEEEEECCCCCeEEEEeCCCc
Q 008393 287 TSKVICCHFSSDG----KLLATGGHDKKAVLWHTD-----TLKSKTNLE-EHSS--L--ITDVRFSPSMPRLATSSFDKT 352 (567)
Q Consensus 287 ~~~V~~l~~s~dg----~~lasg~~dg~I~vwd~~-----~~~~~~~l~-~h~~--~--V~~i~fsp~~~~l~s~s~dg~ 352 (567)
-..|..+.|.|-+ -.|+.....+.|.||.+. ..+....-. .... + -..+.|+|....|++-.....
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv 135 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV 135 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce
Confidence 3568889999853 245555678899999875 223222211 1111 1 235689999998888877766
Q ss_pred EEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 353 VRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 353 I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
-.++++......++.-....+.|.|.+|..||.+|+++.+..=.-+|||-...
T Consensus 136 SV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 136 SVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 66777776555444444567889999999999999988887778899986554
No 377
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.39 E-value=0.00043 Score=43.87 Aligned_cols=38 Identities=32% Similarity=0.543 Sum_probs=34.2
Q ss_pred eeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEe
Q 008393 278 KEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWH 315 (567)
Q Consensus 278 ~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd 315 (567)
+....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667788999999999999999999999999999996
No 378
>PHA02713 hypothetical protein; Provisional
Probab=97.33 E-value=0.02 Score=61.88 Aligned_cols=214 Identities=9% Similarity=0.071 Sum_probs=107.4
Q ss_pred cEEEEeCCCCeeee--eecccCccEEEEEECCCCCeEEEEeCC------CcEEEEEcCCCCceeEEecc---CCCcEEEE
Q 008393 310 KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD------KTVRVWDADNPGYSLRTFMG---HSASVMSL 378 (567)
Q Consensus 310 ~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~---h~~~V~~l 378 (567)
.+..||..+.+... .+...... .+++. -++..++.|+.+ ..+..||..+... ..+.. ..... ++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL 347 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence 56778887655332 22211111 12222 256677777754 3477888876332 22211 11111 22
Q ss_pred EEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEE--EeCCeeEEE-EecCCCEEEEEECC-----------------
Q 008393 379 DFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRV--FKGGTAQMR-FQPHLGRYLAAAAE----------------- 433 (567)
Q Consensus 379 ~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~--~~~~~~~~~-~~~~~~~l~~~~~d----------------- 433 (567)
+.. ++.+++.||.++ .+..||..+.+.... +........ ..-++..+++|+.+
T Consensus 348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~ 425 (557)
T PHA02713 348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME 425 (557)
T ss_pred EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence 222 346777787654 488899887754432 111111111 12234444445443
Q ss_pred ------CeEEEEECCCCeEEEEecCCCCCee-EEEEcCCCCEEEEEeCC-------eEEEEeCCCCCCCceEEEeecCCC
Q 008393 434 ------NVVSILDAETQACRLSLQGHTKPID-SVCWDPSGELLASVSED-------SVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 434 ------g~I~i~d~~~~~~~~~~~~h~~~V~-~l~~sp~g~~l~s~s~d-------~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
..+..||.++.+-...-.-...... +++ .-+|++.+.|+.+ .|..||..+......+..+.....
T Consensus 426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~ 504 (557)
T PHA02713 426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS 504 (557)
T ss_pred ccccccceEEEECCCCCeEeecCCCCcccccCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence 3577899877643221111111111 222 2346666666532 367888876223344444443333
Q ss_pred ceEEEEEeCCCCeEEEEEcCC--eEEEEECCCCcEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQ--SLELWNMSENKTM 533 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg--~I~iwd~~~~~~~ 533 (567)
....+++ +++..++||.++ .+..||..+.+..
T Consensus 505 ~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 505 ALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred cceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence 2222222 677777888787 7889999888765
No 379
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.31 E-value=0.00067 Score=42.95 Aligned_cols=39 Identities=36% Similarity=0.537 Sum_probs=34.4
Q ss_pred CeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEE
Q 008393 319 LKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 319 ~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd 357 (567)
++....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 355667778899999999999999999999999999996
No 380
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.30 E-value=0.038 Score=50.64 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=101.6
Q ss_pred eEEEEeCCCcEEEEeC--CCCeeeeeecc-----cCccEEEEEECCCCCeEEEEeC---------CCcEEEEEcCCCCce
Q 008393 301 LLATGGHDKKAVLWHT--DTLKSKTNLEE-----HSSLITDVRFSPSMPRLATSSF---------DKTVRVWDADNPGYS 364 (567)
Q Consensus 301 ~lasg~~dg~I~vwd~--~~~~~~~~l~~-----h~~~V~~i~fsp~~~~l~s~s~---------dg~I~iwd~~~~~~~ 364 (567)
+.+.++..-.|.-||. +..+...++.. .....++-..+|+|++++-.-. .|.++.|-... .
T Consensus 73 ~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h---~ 149 (310)
T KOG4499|consen 73 FAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH---Q 149 (310)
T ss_pred EEEeecceEEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC---C
Confidence 4444444445556773 33334444221 2344566677899988443222 24455555542 1
Q ss_pred eEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEE--CCCCee-----eEEEeC-------CeeEEEEecCCCEEEEE
Q 008393 365 LRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWS--INNGSC-----TRVFKG-------GTAQMRFQPHLGRYLAA 430 (567)
Q Consensus 365 ~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd--~~~~~~-----~~~~~~-------~~~~~~~~~~~~~l~~~ 430 (567)
+..+...-+--..|+|+.+.+.+.++-+.+-+|.-|| ..+|.. +..++. ....+++...++.++++
T Consensus 150 v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~ 229 (310)
T KOG4499|consen 150 VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVAT 229 (310)
T ss_pred ceeeehhccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEE
Confidence 2222223334457889988888888888888998888 555532 222221 12335566677778888
Q ss_pred ECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcC
Q 008393 431 AAENVVSILDAETQACRLSLQGHTKPIDSVCWDP 464 (567)
Q Consensus 431 ~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp 464 (567)
...++|..+|..+++.+..++-....|+|+||--
T Consensus 230 ~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 230 FNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred ecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 8889999999999999999998899999999964
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.30 E-value=0.013 Score=47.49 Aligned_cols=101 Identities=20% Similarity=0.206 Sum_probs=66.8
Q ss_pred eEEEEEcC---CC-CeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 290 VICCHFSS---DG-KLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 290 V~~l~~s~---dg-~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
|+++++.. || +.|++|+.|..|++|+-+ +.+..+... +.|++++-... ..++.+-.+|+|-+|+-... ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~R--lW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQR--LW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCcce--ee
Confidence 55666544 44 589999999999999854 566666644 45777776655 57999999999999987542 22
Q ss_pred EEeccCCCcEEEEEEc---CCCCeEEEEEeCCCcEE
Q 008393 366 RTFMGHSASVMSLDFH---PNKDDLICSCDGDGEIR 398 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~---p~~~~li~s~~~dg~I~ 398 (567)
+.-. ...+.++++. .+|..-+++|-.+|.|-
T Consensus 76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 2336666553 33444455787788764
No 382
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.22 E-value=0.15 Score=48.65 Aligned_cols=191 Identities=12% Similarity=0.125 Sum_probs=122.3
Q ss_pred eccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc-CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 283 VRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH-SSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 283 l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h-~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
+.+-+..|.++.|+|+.+.|++......-.||=..+|+.+.++.-. -..-..|.|..++.+.++--.+..+.++.++..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 4555666999999999999988888888888877789998887621 223456778778878888778888988887754
Q ss_pred Ccee---------EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe-ee--E----------EEeCCeeEEE
Q 008393 362 GYSL---------RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS-CT--R----------VFKGGTAQMR 419 (567)
Q Consensus 362 ~~~~---------~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~-~~--~----------~~~~~~~~~~ 419 (567)
...+ ......+.....++|.|....++ ..-+-.-+.||.+.... .+ . .+-..+..+.
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~-~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLF-VAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEE-EEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 2221 11112256678999999988777 55566677777665433 11 1 1223455677
Q ss_pred EecCCCEEEEEEC-CCeEEEEECCCCeEEEEecCCC---------CCeeEEEEcCCCCEEEEEeCC
Q 008393 420 FQPHLGRYLAAAA-ENVVSILDAETQACRLSLQGHT---------KPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 420 ~~~~~~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~---------~~V~~l~~sp~g~~l~s~s~d 475 (567)
|++..+.+++-+. ++.+...|.... ++..+.-+. .....|+..++|.+.+++-.+
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn 304 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN 304 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence 8877777766665 456666665544 232222111 123467777777655544433
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.22 E-value=0.22 Score=50.11 Aligned_cols=66 Identities=9% Similarity=0.016 Sum_probs=40.8
Q ss_pred CceEEEEEeC-------CCCeEEEEEcCCeEEEEECCCCcEE----Ee-ccccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 499 NKFHSCVFHP-------TYPSLLVIGCYQSLELWNMSENKTM----TL-TAHEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 499 ~~i~~~~~sp-------~~~~l~~~~~dg~I~iwd~~~~~~~----~~-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
..+..+.|.. .+.++++.-..+.|....+..+..+ .+ ......+..+++.|||.++++...+|.|+
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455666653 3344444444568888888755332 22 23445799999999999998888888774
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.0049 Score=62.62 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=88.1
Q ss_pred EEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCe-------EEEEeCCCcEEEEEcCCCCc-eeEEeccCC--
Q 008393 303 ATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPR-------LATSSFDKTVRVWDADNPGY-SLRTFMGHS-- 372 (567)
Q Consensus 303 asg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~-------l~s~s~dg~I~iwd~~~~~~-~~~~~~~h~-- 372 (567)
.++.....++-.|++.|+.+..++.|.. |.-+.+.|+.+. -+.|-.|..|.-||.+-.+. .+....+|.
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~ 428 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS 428 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence 3455566788888899999988887777 777777776541 24455667788888764333 111111111
Q ss_pred --CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEe
Q 008393 373 --ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSL 450 (567)
Q Consensus 373 --~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~ 450 (567)
....|++-. ..+++++|+.+|.|++||--.......+
T Consensus 429 ~k~nFsc~aTT-----------------------------------------~sG~IvvgS~~GdIRLYdri~~~AKTAl 467 (644)
T KOG2395|consen 429 TKNNFSCFATT-----------------------------------------ESGYIVVGSLKGDIRLYDRIGRRAKTAL 467 (644)
T ss_pred cccccceeeec-----------------------------------------CCceEEEeecCCcEEeehhhhhhhhhcc
Confidence 111121111 1356666666677777766333333456
Q ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 451 QGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 451 ~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
.+-..+|..|..+.+|++|++.+...+.+.++.
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~ 500 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDTL 500 (644)
T ss_pred cccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence 667789999999999999998888777777664
No 385
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.19 E-value=0.33 Score=49.31 Aligned_cols=219 Identities=12% Similarity=0.118 Sum_probs=107.2
Q ss_pred CCCeEEEEe-CCCcEEEEeCCC----Ceeeeeecc---cC----ccEEEEEECCCCCeEEEEe--C----CCcEEEEEcC
Q 008393 298 DGKLLATGG-HDKKAVLWHTDT----LKSKTNLEE---HS----SLITDVRFSPSMPRLATSS--F----DKTVRVWDAD 359 (567)
Q Consensus 298 dg~~lasg~-~dg~I~vwd~~~----~~~~~~l~~---h~----~~V~~i~fsp~~~~l~s~s--~----dg~I~iwd~~ 359 (567)
+.++|+..+ ..+.|+|+|+.+ .+..++++. +. ..-..+.--|+|..++++- . -|-+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777776 678999999973 345555542 11 1122334457888887762 2 2457777777
Q ss_pred CCCceeEEeccC---CCcEEEEEEcCCCCeEEEEEe--------------------CCCcEEEEECCCCeeeEEEeCC--
Q 008393 360 NPGYSLRTFMGH---SASVMSLDFHPNKDDLICSCD--------------------GDGEIRYWSINNGSCTRVFKGG-- 414 (567)
Q Consensus 360 ~~~~~~~~~~~h---~~~V~~l~~~p~~~~li~s~~--------------------~dg~I~iwd~~~~~~~~~~~~~-- 414 (567)
+ .......... ...-+.+-|.|..+.+| |.. ....+.+||+.+.+.++++.-+
T Consensus 166 t-f~v~g~We~~~~~~~~gYDfw~qpr~nvMi-SSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 166 T-FEVKGRWEKDRGPQPFGYDFWYQPRHNVMI-SSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp T---EEEE--SB-TT------EEEETTTTEEE-E-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred c-ccccceeccCCCCCCCCCCeEEcCCCCEEE-EeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 5 3344443322 23345667777655444 542 2358999999999999998754
Q ss_pred ---eeEEEE--ecCCCEEEEEEC-CCeEEEEEC-CCCe----EEEEecCC-----------------CCCeeEEEEcCCC
Q 008393 415 ---TAQMRF--QPHLGRYLAAAA-ENVVSILDA-ETQA----CRLSLQGH-----------------TKPIDSVCWDPSG 466 (567)
Q Consensus 415 ---~~~~~~--~~~~~~l~~~~~-dg~I~i~d~-~~~~----~~~~~~~h-----------------~~~V~~l~~sp~g 466 (567)
...++| .|....-++++. ...|..|-- +.++ .+..+... ..-|+.|.+|.|.
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 223455 444555444443 555555533 4432 22222211 2347899999999
Q ss_pred CEEEEEeCC--eEEEEeCCCCCCCceEEEeecCC----------------CceEEEEEeCCCCeEEEEEc
Q 008393 467 ELLASVSED--SVRVWTVGSGSEGECVHELSCNG----------------NKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 467 ~~l~s~s~d--~I~iwd~~~~~~~~~i~~~~~~~----------------~~i~~~~~sp~~~~l~~~~~ 518 (567)
++|+..+-. .|+-||+.....++.+..+...+ +...-+..|.||+.|++..+
T Consensus 324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 999988865 89999999877767666544221 12356788999999988754
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.19 E-value=0.21 Score=48.18 Aligned_cols=189 Identities=12% Similarity=0.080 Sum_probs=103.7
Q ss_pred cEEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE-ECCCCeEE-EE
Q 008393 374 SVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL-DAETQACR-LS 449 (567)
Q Consensus 374 ~V~~l~~~p~~~~li~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~-d~~~~~~~-~~ 449 (567)
.+.+.++++++..+.+... ....++++...................|.+++...++...+....++ +...+... ..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 6889999999988877663 34455555443322222222355667799996555555555555555 33333221 12
Q ss_pred ecC--CCCCeeEEEEcCCCCEEEEEe----CCeEEEEeCCCCCCC------ceEEEeecCCCceEEEEEeCCCCeEEEEE
Q 008393 450 LQG--HTKPIDSVCWDPSGELLASVS----EDSVRVWTVGSGSEG------ECVHELSCNGNKFHSCVFHPTYPSLLVIG 517 (567)
Q Consensus 450 ~~~--h~~~V~~l~~sp~g~~l~s~s----~d~I~iwd~~~~~~~------~~i~~~~~~~~~i~~~~~sp~~~~l~~~~ 517 (567)
+.. -...|..+.++|||..++... ...|.+--+...... ..+.........+..+.|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 221 112899999999999888776 336766655432222 11222223356789999999998777765
Q ss_pred cCCe-EEE-EECCCCcEEEeccccCCeeEEEEecCCCEEEEEECCCcE
Q 008393 518 CYQS-LEL-WNMSENKTMTLTAHEGLIAALAVSTETGYVASASHDKFV 563 (567)
Q Consensus 518 ~dg~-I~i-wd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I 563 (567)
..+. +.. +....+....+..-...+..++...+...++. ..++.|
T Consensus 185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~-t~~~~~ 231 (253)
T PF10647_consen 185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYV-TDDGGV 231 (253)
T ss_pred CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEE-ECCCcE
Confidence 5542 333 44444433333222233333333333333333 334433
No 387
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.23 Score=47.33 Aligned_cols=271 Identities=11% Similarity=0.023 Sum_probs=148.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC--ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCce
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS--SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYS 364 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~--~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~ 364 (567)
.+-+..+.|+.+ +...+..+.-++|.|+.+......+..-. +--.+ |.-.|++..++..|.-+.+.|+.++..+
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpssP 161 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSSP 161 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCCc
Confidence 344556777654 77777788889999998655443332111 22233 3345789988886666889999876554
Q ss_pred eE--EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCe---eeEEEeCCeeEEEEecCCCEEEEEECCCeEEEE
Q 008393 365 LR--TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGS---CTRVFKGGTAQMRFQPHLGRYLAAAAENVVSIL 439 (567)
Q Consensus 365 ~~--~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~ 439 (567)
.. .+......-..++.+ |++-+ .+..|+-+.+.|+.... .+.....+...-..++.+++.++...+..+.+.
T Consensus 162 ~lagrya~~~~d~~~v~IS--Gn~AY-vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~egvliv 238 (370)
T COG5276 162 QLAGRYALPGGDTHDVAIS--GNYAY-VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEGVLIV 238 (370)
T ss_pred eeeeeeccCCCCceeEEEe--cCeEE-EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcccceEEE
Confidence 32 333344444667776 44333 56679999999998653 333333332333344445566666666777778
Q ss_pred ECCCCeEEEEecC-CCCCeeEE-EEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 440 DAETQACRLSLQG-HTKPIDSV-CWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 440 d~~~~~~~~~~~~-h~~~V~~l-~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
|..+.+....+.. ....+.++ .|.-.+++.+....+ .+-+.|+.+.........+...+..-..+... +.++..+
T Consensus 239 d~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yia 316 (370)
T COG5276 239 DVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIA 316 (370)
T ss_pred ecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEec
Confidence 8777654333322 11222222 233346666666666 67777776554333333333222222222222 2333333
Q ss_pred EcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 517 GCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 517 ~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
..+ ...+.+....+.+ ...+...-+.+.+.+-+.+++.+...++.+.||+
T Consensus 317 dkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 317 DKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred cCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence 333 3444444433333 1222222334444444566788888899898885
No 388
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.18 E-value=0.0036 Score=65.62 Aligned_cols=138 Identities=10% Similarity=0.026 Sum_probs=96.1
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEE-ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLS-LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~-~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.++...+.+++.|+.-|.+++|+-..++.... ..+..+.+..++++++..++|.|+.. .|.++-+........+..-.
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~ 118 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTP 118 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecc
Confidence 34555677888888888888888777654432 22344556677888999999999988 89898887654433333222
Q ss_pred ---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCc-----EEEeccccCCeeEEEEecCCCEEEE
Q 008393 496 ---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENK-----TMTLTAHEGLIAALAVSTETGYVAS 556 (567)
Q Consensus 496 ---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~-----~~~~~~h~~~V~~l~~spdg~~l~s 556 (567)
.|...|++++|++++..+++|...|+|.+-.+.... ...+....+.|-.+.+. ++.+|++
T Consensus 119 ~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 119 CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred ccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHh
Confidence 256789999999999999999999999988887721 11444556677777664 3334433
No 389
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.18 E-value=0.035 Score=60.04 Aligned_cols=232 Identities=15% Similarity=0.145 Sum_probs=120.8
Q ss_pred cCCCCeEEEEeCCC------cEEEEeCCCCeeeeeecc-cCccEEEEEECCCCCeEEEEeCC-C-----cEEEEEcCCCC
Q 008393 296 SSDGKLLATGGHDK------KAVLWHTDTLKSKTNLEE-HSSLITDVRFSPSMPRLATSSFD-K-----TVRVWDADNPG 362 (567)
Q Consensus 296 s~dg~~lasg~~dg------~I~vwd~~~~~~~~~l~~-h~~~V~~i~fsp~~~~l~s~s~d-g-----~I~iwd~~~~~ 362 (567)
+..+.+++.||.++ .+..||..+........- +...-.++++. ++...++|+.| | ++..||.....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence 34456777887763 677888877644332221 12222333333 45678888888 3 57788887644
Q ss_pred ceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC-----cEEEEECCCCeeeEEE--eCCeeEEEEecCCCE-EEEEECC-
Q 008393 363 YSLRTFMGHSASVMSLDFHPNKDDLICSCDGDG-----EIRYWSINNGSCTRVF--KGGTAQMRFQPHLGR-YLAAAAE- 433 (567)
Q Consensus 363 ~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg-----~I~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~-l~~~~~d- 433 (567)
. .....-...-..+....-+..+++.|+.|| .|-.||..+.+....- ...........-+++ +++|+.+
T Consensus 361 W--~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 361 W--TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred e--eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCC
Confidence 2 222111111111122222456888898886 4777887776543332 122222332222344 4455533
Q ss_pred -----CeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 -----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 -----g~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
..+..||..+.+... .+..-.... .++. -++.+.+.|+.+ +|..||..+. ....+..+......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~-~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETN-QWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCC-ceeEcccCcccccc
Confidence 467889988765432 222111111 2333 356666666644 3788888764 22222222222222
Q ss_pred eEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEe
Q 008393 501 FHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTL 535 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~ 535 (567)
+. +..-++...++|+.|+ +|..||..+.+....
T Consensus 516 ~g--~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 516 VG--VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred cc--EEEECCEEEEEecccCccccceeEEcCCCCCceeeC
Confidence 21 2223555667777665 788888887776533
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.14 E-value=0.027 Score=60.87 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=115.7
Q ss_pred CCCeEEEEeCCC------cEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCee
Q 008393 340 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSC 407 (567)
Q Consensus 340 ~~~~l~s~s~dg------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~ 407 (567)
.+.+++.|+.++ .+..||..+.......-........++++.. +.++++||.| ..+..||..+.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCce
Confidence 345667777663 5788888874222111111233344555553 4688889988 3678888888774
Q ss_pred eEEE--eCCeeEEEEec-CCCEEEEEECCC-----eEEEEECCCCeEEEEecCCCCCeeEEE-EcCCCCEEEEEeCC---
Q 008393 408 TRVF--KGGTAQMRFQP-HLGRYLAAAAEN-----VVSILDAETQACRLSLQGHTKPIDSVC-WDPSGELLASVSED--- 475 (567)
Q Consensus 408 ~~~~--~~~~~~~~~~~-~~~~l~~~~~dg-----~I~i~d~~~~~~~~~~~~h~~~V~~l~-~sp~g~~l~s~s~d--- 475 (567)
...- ........... ++..+++|+.|| .|..||.++.+-...-.-.. .....+ ..-+|.+.++|+.+
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~~ 440 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGSS 440 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCCc
Confidence 4421 11222222222 344455666664 68889888764322211111 222222 12357777777633
Q ss_pred ----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCC-----eEEEEECCCCcEEEeccccCCeeEEE
Q 008393 476 ----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQ-----SLELWNMSENKTMTLTAHEGLIAALA 546 (567)
Q Consensus 476 ----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg-----~I~iwd~~~~~~~~~~~h~~~V~~l~ 546 (567)
.+..||..+. ....+..+........ +..-++...++||.++ +|..||..+.+...+..-......+.
T Consensus 441 ~~l~sve~YDP~t~-~W~~~~~M~~~R~~~g--~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 441 NCLNSVECYDPETN-TWTLIAPMNTRRSGFG--VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG 517 (571)
T ss_pred cccceEEEEcCCCC-ceeecCCcccccccce--EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc
Confidence 4788888764 2222323322222222 2333566666777665 58999999988775543222222222
Q ss_pred E-ecCCCEEEEEECCCc
Q 008393 547 V-STETGYVASASHDKF 562 (567)
Q Consensus 547 ~-spdg~~l~s~s~Dg~ 562 (567)
. .-+++..++|+.||.
T Consensus 518 ~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 518 VVVLGGKLYAVGGFDGN 534 (571)
T ss_pred EEEECCEEEEEecccCc
Confidence 2 235677888888864
No 391
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.99 E-value=0.79 Score=50.70 Aligned_cols=270 Identities=15% Similarity=0.138 Sum_probs=151.5
Q ss_pred CCeEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCeeeeee--cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCc
Q 008393 288 SKVICCHFSSDGKLLATGGHDKKAVLWHT--DTLKSKTNL--EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGY 363 (567)
Q Consensus 288 ~~V~~l~~s~dg~~lasg~~dg~I~vwd~--~~~~~~~~l--~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~ 363 (567)
..|.-..|-.|..+|.++..||.+.-|-+ .++.....- .--..++.--.|+..++.-+.+..|.-..+|.... +.
T Consensus 584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL 662 (1096)
T KOG1897|consen 584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL 662 (1096)
T ss_pred hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence 34556666667889999999998876654 444433222 12344566666766666555555566666776653 22
Q ss_pred eeEEeccCCCcEEEEE-EcC-CCCeEEEEEeCCCcEEEEECCCCeee--EEEe--CCeeEEEEecCCCEEEEEEC-----
Q 008393 364 SLRTFMGHSASVMSLD-FHP-NKDDLICSCDGDGEIRYWSINNGSCT--RVFK--GGTAQMRFQPHLGRYLAAAA----- 432 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~-~~p-~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~--~~~~~~~~~~~~~~l~~~~~----- 432 (567)
....+. -..+..+| |+. .....++++. .+.+++.-+..-..+ ++.. .....+++.+..-.+.+.+.
T Consensus 663 v~spls--~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~ 739 (1096)
T KOG1897|consen 663 VYSPLS--LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS 739 (1096)
T ss_pred EEeccc--hHHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence 221111 01122221 221 1222333443 566777766653322 2222 33455666653333333222
Q ss_pred ------C---CeEEEEECCCCeEEEEecCC-CC---CeeEEEEcCC-CCEEEEEeC-----------CeEEEEeCCCCCC
Q 008393 433 ------E---NVVSILDAETQACRLSLQGH-TK---PIDSVCWDPS-GELLASVSE-----------DSVRVWTVGSGSE 487 (567)
Q Consensus 433 ------d---g~I~i~d~~~~~~~~~~~~h-~~---~V~~l~~sp~-g~~l~s~s~-----------d~I~iwd~~~~~~ 487 (567)
+ ..++++|-.+.+.+...+-. .. .|.++.|..| +.+++.|.. +.|.||.+..+..
T Consensus 740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~ 819 (1096)
T KOG1897|consen 740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS 819 (1096)
T ss_pred hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence 1 24677887777665443321 12 2444558777 677777752 2577887776555
Q ss_pred CceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.+.+++....+....-+.| +|++| ++-+..|++|++.+++.+ .-..|..++..+.+.-.|..++.|..=++|.+
T Consensus 820 L~~v~e~~v~Gav~aL~~f--ngkll--A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 820 LELVAETVVKGAVYALVEF--NGKLL--AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred eeeeeeeeeccceeehhhh--CCeEE--EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 5555555544433322233 34433 444568999999998665 45578888999999889999999876665543
No 392
>PHA02713 hypothetical protein; Provisional
Probab=96.95 E-value=0.095 Score=56.73 Aligned_cols=199 Identities=7% Similarity=0.019 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCceeEEeccCCCcE--EEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEE--eCCeeE-EEE
Q 008393 352 TVRVWDADNPGYSLRTFMGHSASV--MSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVF--KGGTAQ-MRF 420 (567)
Q Consensus 352 ~I~iwd~~~~~~~~~~~~~h~~~V--~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~--~~~~~~-~~~ 420 (567)
.+..||..+... ..+..-.... .+++.. ++.+++.||.+ ..+..||..+......- ...... ...
T Consensus 273 ~v~~yd~~~~~W--~~l~~mp~~r~~~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~ 348 (557)
T PHA02713 273 CILVYNINTMEY--SVISTIPNHIINYASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA 348 (557)
T ss_pred CEEEEeCCCCeE--EECCCCCccccceEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE
Confidence 467788876332 2221111111 223332 35677777754 34778898877543221 111111 122
Q ss_pred ecCCCEEEEEECC-----CeEEEEECCCCeEEE--EecCCCCCeeEEEEcCCCCEEEEEeCC------------------
Q 008393 421 QPHLGRYLAAAAE-----NVVSILDAETQACRL--SLQGHTKPIDSVCWDPSGELLASVSED------------------ 475 (567)
Q Consensus 421 ~~~~~~l~~~~~d-----g~I~i~d~~~~~~~~--~~~~h~~~V~~l~~sp~g~~l~s~s~d------------------ 475 (567)
.-++..+++|+.+ ..+..||..+.+-.. .+.........+. -+|++.+.|+.+
T Consensus 349 ~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 349 VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccc
Confidence 2334445556554 358899988764322 2221111111222 357777777643
Q ss_pred ------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC------CeEEEEECCC-CcEEEec---ccc
Q 008393 476 ------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY------QSLELWNMSE-NKTMTLT---AHE 539 (567)
Q Consensus 476 ------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d------g~I~iwd~~~-~~~~~~~---~h~ 539 (567)
.|..||..+. ....+..+.... ....+..-+++..++||.+ ..+..||..+ .+...+. ...
T Consensus 427 ~~~~~~~ve~YDP~td-~W~~v~~m~~~r--~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN-IWETLPNFWTGT--IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL 503 (557)
T ss_pred cccccceEEEECCCCC-eEeecCCCCccc--ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence 3667777653 112222221111 1111233345555556543 2478899998 5554322 222
Q ss_pred CCeeEEEEecCCCEEEEEECCC
Q 008393 540 GLIAALAVSTETGYVASASHDK 561 (567)
Q Consensus 540 ~~V~~l~~spdg~~l~s~s~Dg 561 (567)
.....+. -++++.++||.||
T Consensus 504 ~~~~~~~--~~~~iyv~Gg~~~ 523 (557)
T PHA02713 504 SALHTIL--HDNTIMMLHCYES 523 (557)
T ss_pred ccceeEE--ECCEEEEEeeecc
Confidence 2233333 3788889999888
No 393
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0052 Score=63.72 Aligned_cols=90 Identities=16% Similarity=0.188 Sum_probs=75.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEECCCCcE
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKT 532 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~ 532 (567)
..|.-+.|+|.-.++|.+..+ .|.+..++ . ..+.++..++..++ +++|.|||+.|++|-.||+|++.|++++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~---qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-W---QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-c---ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 457789999999999999998 78888875 2 67888886777776 999999999999999999999999999887
Q ss_pred EEe--ccccCCeeEEEEe
Q 008393 533 MTL--TAHEGLIAALAVS 548 (567)
Q Consensus 533 ~~~--~~h~~~V~~l~~s 548 (567)
+.- ......|.++-|+
T Consensus 97 l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWD 114 (665)
T ss_pred eeccccccccchheeecc
Confidence 733 4556678888885
No 394
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.86 E-value=0.0014 Score=59.62 Aligned_cols=138 Identities=14% Similarity=0.052 Sum_probs=81.3
Q ss_pred EEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeee-EEEe---CCe-eEE
Q 008393 344 LATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCT-RVFK---GGT-AQM 418 (567)
Q Consensus 344 l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~-~~~~---~~~-~~~ 418 (567)
|..-+.||.|+-+++.......+.-..|...-.-+.+ +. -++.|+.+|.|++|...-.... ..+. ..+ ..+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~-~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SA-KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---Cc-eEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 4445667778777776422222222222222111112 23 3447888999999988732111 1111 111 112
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCC-CCeeEEEEcCCCCEEEEE--eCC-eEEEEeCCCC
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHT-KPIDSVCWDPSGELLASV--SED-SVRVWTVGSG 485 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~-~~V~~l~~sp~g~~l~s~--s~d-~I~iwd~~~~ 485 (567)
..-.++...++++.++.|+.|++.-.+.+-....|. .++..+.....+++|++. +.| .++.|++...
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 222334567788889999999999888877777777 566666666667777777 677 7888888643
No 395
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.84 E-value=0.44 Score=53.13 Aligned_cols=112 Identities=19% Similarity=0.218 Sum_probs=68.9
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeeeeeecccCcc--------EEEEEECC----------------CCCeEEEEeCCCcEE
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSL--------ITDVRFSP----------------SMPRLATSSFDKTVR 354 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~--------V~~i~fsp----------------~~~~l~s~s~dg~I~ 354 (567)
+..|++++.++.|.-.|..+|+.+..+...... ++.+.+.. ++..|+.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 456777777888999999999888776533211 22333321 344788899999999
Q ss_pred EEEcCCCCceeEEeccCCCcEE-------------EEEEcC--CCCeEEEEEeC----------CCcEEEEECCCCeeeE
Q 008393 355 VWDADNPGYSLRTFMGHSASVM-------------SLDFHP--NKDDLICSCDG----------DGEIRYWSINNGSCTR 409 (567)
Q Consensus 355 iwd~~~~~~~~~~~~~h~~~V~-------------~l~~~p--~~~~li~s~~~----------dg~I~iwd~~~~~~~~ 409 (567)
-.|.++ ++.+..+. ..+.|. .+.-.| .++.++ .|+. +|.|+-+|.++|+.+.
T Consensus 274 ALDA~T-Gk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W 350 (764)
T TIGR03074 274 ALDADT-GKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW 350 (764)
T ss_pred EEECCC-CCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence 999988 44443332 111110 000011 023344 4532 6889999999999988
Q ss_pred EEeC
Q 008393 410 VFKG 413 (567)
Q Consensus 410 ~~~~ 413 (567)
.+..
T Consensus 351 ~~~~ 354 (764)
T TIGR03074 351 AWDP 354 (764)
T ss_pred EEec
Confidence 7763
No 396
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.78 E-value=0.52 Score=44.90 Aligned_cols=178 Identities=15% Similarity=0.113 Sum_probs=111.3
Q ss_pred eEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeE
Q 008393 290 VICCHFSSDGKLLATGGHDK--KAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLR 366 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg--~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~ 366 (567)
.-.+.|..+|.++-+.|.-| .|+.+|+.+++......-.. ..-..|+.. +++.+...=.++...+||..+ -+.+.
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t-l~~~~ 124 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT-LKKIG 124 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT-TEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc-ceEEE
Confidence 44678878888888877766 79999999998776544211 112223332 222333344578899999987 56666
Q ss_pred EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--------CeeEEEEecCCCEEEEEEC-CCeEE
Q 008393 367 TFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG--------GTAQMRFQPHLGRYLAAAA-ENVVS 437 (567)
Q Consensus 367 ~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-dg~I~ 437 (567)
.+. ..+.=+.|+ .++..|++|- ....|+++|..+.+..+.+.- ..+.+.+. ++.+++--. ...|.
T Consensus 125 ~~~-y~~EGWGLt--~dg~~Li~SD-GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 125 TFP-YPGEGWGLT--SDGKRLIMSD-GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIV 198 (264)
T ss_dssp EEE--SSS--EEE--ECSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEE
T ss_pred EEe-cCCcceEEE--cCCCEEEEEC-CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEE
Confidence 664 345566777 3466777554 467899999988877666542 23334454 455555544 78999
Q ss_pred EEECCCCeEEEEecC------------C---CCCeeEEEEcCCCCEEEEEeCC
Q 008393 438 ILDAETQACRLSLQG------------H---TKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 438 i~d~~~~~~~~~~~~------------h---~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..|..+|+++..+.- + ..-.+.|+|+|....|...+..
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~ 251 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL 251 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence 999999998876531 1 2457899999988777776665
No 397
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.75 E-value=0.12 Score=42.10 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=60.8
Q ss_pred EEEEEE---cCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 375 VMSLDF---HPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 375 V~~l~~---~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|++|++ ..+|..-|++|+.|..|++|+-..-.........+..++-... ++++.+..+|+|-+|+-.. .++..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiK 78 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIK 78 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeec
Confidence 455554 4455566779999999999986643333333345555555554 7899999999999998643 333444
Q ss_pred CCCCCeeEEEEcC-CC--C-EEEEEeCC-eE
Q 008393 452 GHTKPIDSVCWDP-SG--E-LLASVSED-SV 477 (567)
Q Consensus 452 ~h~~~V~~l~~sp-~g--~-~l~s~s~d-~I 477 (567)
. +..+.++++.. ++ . -|++|-.+ .|
T Consensus 79 S-K~~~~~~~~~D~~gdG~~eLI~GwsnGkv 108 (111)
T PF14783_consen 79 S-KNQVTSMAFYDINGDGVPELIVGWSNGKV 108 (111)
T ss_pred c-CCCeEEEEEEcCCCCCceEEEEEecCCeE
Confidence 3 23366665543 32 1 45555444 44
No 398
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.64 E-value=0.25 Score=46.84 Aligned_cols=169 Identities=18% Similarity=0.190 Sum_probs=107.9
Q ss_pred EcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEEC-C-CeEEEEECCCCeEEEEecCCCCC-
Q 008393 380 FHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAA-E-NVVSILDAETQACRLSLQGHTKP- 456 (567)
Q Consensus 380 ~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d-g~I~i~d~~~~~~~~~~~~h~~~- 456 (567)
..+++.+-+++.+++|+|..- ..+......+.++|....-++-.. - -...+||........++...+..
T Consensus 43 ~~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH 114 (366)
T COG3490 43 DARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH 114 (366)
T ss_pred eccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce
Confidence 345666666666666554321 112223345667776665544444 3 35677888776555444332221
Q ss_pred -eeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEc-----------
Q 008393 457 -IDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGC----------- 518 (567)
Q Consensus 457 -V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~----------- 518 (567)
.-.=+|++||.+|+..-.| .|-|||.+ .....+-++..++-....+.+.+||+.++++..
T Consensus 115 fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~ 192 (366)
T COG3490 115 FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRT 192 (366)
T ss_pred eecccccCCCCcEEEeecCCCCCCCceEEEEecc--cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCcc
Confidence 1124699999999987654 38999997 345778889999999999999999998887654
Q ss_pred -------CCeEEEEECCCCcEE---Eec--cccCCeeEEEEecCCCEEEEEE
Q 008393 519 -------YQSLELWNMSENKTM---TLT--AHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 519 -------dg~I~iwd~~~~~~~---~~~--~h~~~V~~l~~spdg~~l~s~s 558 (567)
.-++.+.|..++..+ ++. .+.-.|..++..+||..++-+-
T Consensus 193 ~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 193 ELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 114555565556544 233 4556788899988888766553
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.033 Score=61.47 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=71.3
Q ss_pred CCCeEEEEeCCCcEEEEeCCCC-eeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTL-KSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVM 376 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~-~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 376 (567)
.+..++.|+..|.|-..|+... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+.. +..++.+..|..+++
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~~ap~t 176 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEHGAPVT 176 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-CcceeeeeecCCccc
Confidence 3457888888899988887542 22222233467899999999999999999999999999998 667777776666655
Q ss_pred EEE---EcCCCCeEEEEEeCCCcEEEEEC
Q 008393 377 SLD---FHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 377 ~l~---~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
.+- +..++. .+++++..|. +|.+
T Consensus 177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 543 333433 4546666565 5554
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.61 Score=44.65 Aligned_cols=201 Identities=13% Similarity=0.152 Sum_probs=102.6
Q ss_pred ecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc-CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 325 LEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG-HSASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 325 l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
+.+-...|.++.|+|+.+.|++......-.||=. +.+..++++.- .-.....|.|..++ .++++--.++.+.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEe-cCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEc
Confidence 3445556999999999998888887775555533 34777766541 12334556676554 344455556777776655
Q ss_pred CCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeC
Q 008393 404 NGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTV 482 (567)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~ 482 (567)
....+..++.. .| .+............++|+|....|..+-+. -+.||.+
T Consensus 159 ~~t~~~~~~~~--------------------~i---------~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~ 209 (316)
T COG3204 159 ADTTVISAKVQ--------------------KI---------PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEV 209 (316)
T ss_pred CCccEEeccce--------------------EE---------eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEE
Confidence 44322211100 00 000111113456678888876666666555 4444444
Q ss_pred CCCCCCceEEEeecC-------CCceEEEEEeCCCCeEEEEE-cCCeEEEEECCCCcEE--Eeccc----c---CCeeEE
Q 008393 483 GSGSEGECVHELSCN-------GNKFHSCVFHPTYPSLLVIG-CYQSLELWNMSENKTM--TLTAH----E---GLIAAL 545 (567)
Q Consensus 483 ~~~~~~~~i~~~~~~-------~~~i~~~~~sp~~~~l~~~~-~dg~I~iwd~~~~~~~--~~~~h----~---~~V~~l 545 (567)
......-.++....+ -..+.++.|++....|++-+ .++.|.-.|....-.- .+... . ...-.+
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGi 289 (316)
T COG3204 210 TQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGI 289 (316)
T ss_pred ecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCccee
Confidence 322211111111111 12355667777555555544 4456666676554321 22111 1 123457
Q ss_pred EEecCCCEEEE
Q 008393 546 AVSTETGYVAS 556 (567)
Q Consensus 546 ~~spdg~~l~s 556 (567)
+..++|.+.++
T Consensus 290 amDd~g~lYIv 300 (316)
T COG3204 290 AMDDDGNLYIV 300 (316)
T ss_pred EECCCCCEEEE
Confidence 77777765443
No 401
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.60 E-value=1.1 Score=46.19 Aligned_cols=259 Identities=15% Similarity=0.167 Sum_probs=143.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCeee--ee-e-cccCccEEEEEEC---C--CCCeEEEEeCCCcEEEEEcCCCC-------
Q 008393 299 GKLLATGGHDKKAVLWHTDTLKSK--TN-L-EEHSSLITDVRFS---P--SMPRLATSSFDKTVRVWDADNPG------- 362 (567)
Q Consensus 299 g~~lasg~~dg~I~vwd~~~~~~~--~~-l-~~h~~~V~~i~fs---p--~~~~l~s~s~dg~I~iwd~~~~~------- 362 (567)
...+++|+..|.++||+....... .. + ..-..+|..|..- + +...||+ -.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 468999999999999998543211 11 1 1234567776653 2 2224444 456678888873211
Q ss_pred -ceeEEeccCCC--cEEEEEEcC----CCCeEEEEEeCCCcEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECC
Q 008393 363 -YSLRTFMGHSA--SVMSLDFHP----NKDDLICSCDGDGEIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 363 -~~~~~~~~h~~--~V~~l~~~p----~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d 433 (567)
..+.....|.- ....+++-| .+..+|+.-+-||.+.+|+-+.-...+.+.+ -...+.|.+..+.+++++.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 22333334432 233344332 2357888999999999999887666555554 23568899999999999998
Q ss_pred CeEEEEECCC--------------------C---eEEEEecCCCCCeeEE---EEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 434 NVVSILDAET--------------------Q---ACRLSLQGHTKPIDSV---CWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 434 g~I~i~d~~~--------------------~---~~~~~~~~h~~~V~~l---~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
..|..|.... + .+-+++.- ...+..| .++.....++.-++..+.+.+-. | .
T Consensus 196 ~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-~ 272 (418)
T PF14727_consen 196 WTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-S 272 (418)
T ss_pred eeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-e
Confidence 8888885321 0 01111111 1223333 33333345555666666666653 2 2
Q ss_pred CceEEEeecCCCceEEEEEeC----CC---CeEEEEEcCCeEEEEECCCCcEEEeccccCCeeEEEE---ecCCCEEEEE
Q 008393 488 GECVHELSCNGNKFHSCVFHP----TY---PSLLVIGCYQSLELWNMSENKTMTLTAHEGLIAALAV---STETGYVASA 557 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp----~~---~~l~~~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~---spdg~~l~s~ 557 (567)
.+....+.. .+...+.|.. ++ ..+++++.++.+.||.=.+-....-. ...+| ++.. ..-...|++-
T Consensus 273 l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l-~~~PV-al~v~~~~~~~G~IV~L 348 (418)
T PF14727_consen 273 LRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL-PHVPV-ALSVANFNGLKGLIVSL 348 (418)
T ss_pred EEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC-CCCCE-EEEecccCCCCceEEEE
Confidence 233333322 2222222222 22 24889999999999964332222111 11222 3332 2234578888
Q ss_pred ECCCcEEE
Q 008393 558 SHDKFVKL 565 (567)
Q Consensus 558 s~Dg~I~i 565 (567)
+.||.|.+
T Consensus 349 s~~G~L~v 356 (418)
T PF14727_consen 349 SDEGQLSV 356 (418)
T ss_pred cCCCcEEE
Confidence 88888764
No 402
>PHA03098 kelch-like protein; Provisional
Probab=96.42 E-value=0.18 Score=54.60 Aligned_cols=197 Identities=9% Similarity=0.045 Sum_probs=93.8
Q ss_pred CCCeEEEEeCCC------cEEEEEcCCCCceeEEecc---CCCcEEEEEEcCCCCeEEEEEeCC-----CcEEEEECCCC
Q 008393 340 SMPRLATSSFDK------TVRVWDADNPGYSLRTFMG---HSASVMSLDFHPNKDDLICSCDGD-----GEIRYWSINNG 405 (567)
Q Consensus 340 ~~~~l~s~s~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~~p~~~~li~s~~~d-----g~I~iwd~~~~ 405 (567)
++..++.|+.++ .+..||..+... ..+.. ..... +++.. ++.+++.||.+ ..+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W--~~~~~~~~~R~~~-~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSW--NKVPELIYPRKNP-GVTVF--NNRIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCee--eECCCCCcccccc-eEEEE--CCEEEEEeCCCCCEecceEEEEcCCCC
Confidence 445566665432 467788765332 22221 11111 22222 35577777765 35778888776
Q ss_pred eeeEEE--eCCeeE-EEEecCCCEEEEEECC------CeEEEEECCCCeEEEEecCCCC-CeeEEEEcCCCCEEEEEeCC
Q 008393 406 SCTRVF--KGGTAQ-MRFQPHLGRYLAAAAE------NVVSILDAETQACRLSLQGHTK-PIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 406 ~~~~~~--~~~~~~-~~~~~~~~~l~~~~~d------g~I~i~d~~~~~~~~~~~~h~~-~V~~l~~sp~g~~l~s~s~d 475 (567)
+....- ..+... .....++..++.|+.+ +.+..||..+.+-...-..... .-.+++ ..++.+++.|+.+
T Consensus 369 ~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~ 447 (534)
T PHA03098 369 KWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGGIS 447 (534)
T ss_pred ceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECCcc
Confidence 543321 111111 1122233444555521 4688999887643321111101 111222 2356666666532
Q ss_pred ---------eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcC-----CeEEEEECCCCcEEEeccccCC
Q 008393 476 ---------SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCY-----QSLELWNMSENKTMTLTAHEGL 541 (567)
Q Consensus 476 ---------~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~d-----g~I~iwd~~~~~~~~~~~h~~~ 541 (567)
.+.+||..+.. ...+..+.........+.+ ++..++.||.+ +.|.+||..+.....+......
T Consensus 448 ~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~ 524 (534)
T PHA03098 448 YIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKV 524 (534)
T ss_pred CCCCCcccceEEEecCCCCc-eeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCccc
Confidence 38888887642 1122111111111122222 56656666543 4789999988876655544444
Q ss_pred eeEE
Q 008393 542 IAAL 545 (567)
Q Consensus 542 V~~l 545 (567)
+.++
T Consensus 525 ~~~~ 528 (534)
T PHA03098 525 IGSL 528 (534)
T ss_pred ccce
Confidence 4333
No 403
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=96.39 E-value=0.003 Score=70.65 Aligned_cols=6 Identities=33% Similarity=0.528 Sum_probs=2.2
Q ss_pred HhhcCC
Q 008393 12 AQQNLT 17 (567)
Q Consensus 12 ~~~~~~ 17 (567)
|++-|.
T Consensus 2103 ~~~ql~ 2108 (2220)
T KOG3598|consen 2103 AHHQLV 2108 (2220)
T ss_pred HHHHHH
Confidence 333333
No 404
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.39 E-value=0.0086 Score=54.66 Aligned_cols=100 Identities=17% Similarity=0.158 Sum_probs=66.5
Q ss_pred CCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceE-EEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec-ccc-CC
Q 008393 466 GELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFH-SCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT-AHE-GL 541 (567)
Q Consensus 466 g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~-~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~-~h~-~~ 541 (567)
+.-+++|+.+ .|++|...-.. .....+......+. .+..-.++.+.++++.++.|+.|++.-++.+.+. .|. .+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES 147 (238)
T ss_pred CceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence 4457777777 88888875211 11111111122222 2233445668899999999999999999888544 555 56
Q ss_pred eeEEEEecCCCEEEEE--ECCCcEEEcC
Q 008393 542 IAALAVSTETGYVASA--SHDKFVKLWK 567 (567)
Q Consensus 542 V~~l~~spdg~~l~s~--s~Dg~I~iWd 567 (567)
+..+..+..+++|+.+ |.|..++.|+
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcc
Confidence 7777777778888888 8888899886
No 405
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=96.33 E-value=1.2 Score=43.86 Aligned_cols=163 Identities=11% Similarity=0.082 Sum_probs=96.9
Q ss_pred cEEEEECCCCeeeEEEeC---------CeeEEEEecCC-----CEEEEEEC-CCeEEEEECCCCeEEEEecCCC------
Q 008393 396 EIRYWSINNGSCTRVFKG---------GTAQMRFQPHL-----GRYLAAAA-ENVVSILDAETQACRLSLQGHT------ 454 (567)
Q Consensus 396 ~I~iwd~~~~~~~~~~~~---------~~~~~~~~~~~-----~~l~~~~~-dg~I~i~d~~~~~~~~~~~~h~------ 454 (567)
.|.+||+.+.+.++.+.- ....+.+.... ..++.+.. .+.|.+||+.+++..+.+..+.
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999988877642 23456666532 23333333 4699999999987766554321
Q ss_pred -------------CCeeEEEEcC---CCCEEEEEeCCeEEEEeCCCC-----CC------CceEEEeecCCCceEEEEEe
Q 008393 455 -------------KPIDSVCWDP---SGELLASVSEDSVRVWTVGSG-----SE------GECVHELSCNGNKFHSCVFH 507 (567)
Q Consensus 455 -------------~~V~~l~~sp---~g~~l~s~s~d~I~iwd~~~~-----~~------~~~i~~~~~~~~~i~~~~~s 507 (567)
..+..++.+| ++++|+......-++|.+.+. .. ...+..+-........++++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D 194 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID 194 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence 2366677766 777888777654455554321 11 11223332223456778999
Q ss_pred CCCCeEEEEEcCCeEEEEECCCC----cEE--Eeccc-cCCeeEEEEec--CCCEEEEEE
Q 008393 508 PTYPSLLVIGCYQSLELWNMSEN----KTM--TLTAH-EGLIAALAVST--ETGYVASAS 558 (567)
Q Consensus 508 p~~~~l~~~~~dg~I~iwd~~~~----~~~--~~~~h-~~~V~~l~~sp--dg~~l~s~s 558 (567)
++|..+++--..+.|..|+..+. ... ..... -..+.++.+.+ +|.+.+.+.
T Consensus 195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 99988888888899999999872 211 22222 35788999998 777666543
No 406
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.51 Score=47.68 Aligned_cols=121 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeee----eeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSK----TNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~----~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
..++|.++.||+|.+.||+--.+++|.+++....+.. .+.+..+..|....|+.+ ..+|.-...| +.+|.+...
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence 4569999999999999999999999999988432222 222344556888999866 5677777666 888988876
Q ss_pred CceeEEeccCCCcEEEEEEcCCCCeEEEEEe-CCCcEEEEECCCCeee
Q 008393 362 GYSLRTFMGHSASVMSLDFHPNKDDLICSCD-GDGEIRYWSINNGSCT 408 (567)
Q Consensus 362 ~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~-~dg~I~iwd~~~~~~~ 408 (567)
...++..+.|...|....|+++.+-++.+.+ ..+.+.=+-++++...
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 7777888889999999999998765554444 4455555555555443
No 407
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=96.23 E-value=1.1 Score=42.37 Aligned_cols=249 Identities=12% Similarity=0.022 Sum_probs=152.9
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEe-
Q 008393 290 VICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTF- 368 (567)
Q Consensus 290 V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~- 368 (567)
-..++-.+||..-+++...+.|--.|-.+++....--+....-..|..-||+...++=+.. .|.-.|-++.+.....+
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp 142 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP 142 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence 3468888999988998888888888888998877766666667788888988876664443 45556655422211111
Q ss_pred -ccCCCcEEEEEEcCCCCeEEEEEeC---------CCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEE
Q 008393 369 -MGHSASVMSLDFHPNKDDLICSCDG---------DGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSI 438 (567)
Q Consensus 369 -~~h~~~V~~l~~~p~~~~li~s~~~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i 438 (567)
..-........|.+.|...| ++.. .+.|++|+...+ .....++..|++...++.-.++.|..
T Consensus 143 ~~~a~~nlet~vfD~~G~lWF-t~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 143 LEHADANLETAVFDPWGNLWF-TGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred cccCCCcccceeeCCCccEEE-eeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceEE
Confidence 12345677888999876544 6642 123444443322 24567889999988888888888888
Q ss_pred EECCCCeEEEE--ecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 439 LDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 439 ~d~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
.|..++..... -.........+--++.|..-++.... .+..||-.... -.-..+.+....-.++.+...++.-+.
T Consensus 215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~s 292 (353)
T COG4257 215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLS 292 (353)
T ss_pred cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEee
Confidence 88877622211 11112334455556777776665555 77777765421 222344444555566666666664444
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEec
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVST 549 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~sp 549 (567)
-...+.|.-||-++.....+......+..+.+..
T Consensus 293 ea~agai~rfdpeta~ftv~p~pr~n~gn~ql~g 326 (353)
T COG4257 293 EADAGAIGRFDPETARFTVLPIPRPNSGNIQLDG 326 (353)
T ss_pred ccccCceeecCcccceEEEecCCCCCCCceeccC
Confidence 4455677777777666555444333333444433
No 408
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.11 E-value=0.65 Score=44.71 Aligned_cols=144 Identities=14% Similarity=0.145 Sum_probs=88.3
Q ss_pred CeeEEEEecCCCEEEEEE---CCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEe-CCCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAA---AENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWT-VGSGSEG 488 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~---~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd-~~~~~~~ 488 (567)
.....++++++..+++.. ....++++........ .+.+ ..+....|++++.+.+....+ ..+++. ...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~-~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP-VLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee-eccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 456778999988887777 2345666654433222 2222 367888999998877766655 566663 2332221
Q ss_pred ceEEEeecCCCceEEEEEeCCCCeEEEEEc---CCeEEEEECC---CC--cEE----Eec-cccCCeeEEEEecCCCEEE
Q 008393 489 ECVHELSCNGNKFHSCVFHPTYPSLLVIGC---YQSLELWNMS---EN--KTM----TLT-AHEGLIAALAVSTETGYVA 555 (567)
Q Consensus 489 ~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~---dg~I~iwd~~---~~--~~~----~~~-~h~~~V~~l~~spdg~~l~ 555 (567)
...-........|..+.++|||..+++... ++.|++--+. .+ ..+ .+. .....+.+++|.+++.+++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 111111111228999999999999988773 4677776543 22 111 222 3356799999999998877
Q ss_pred EEECC
Q 008393 556 SASHD 560 (567)
Q Consensus 556 s~s~D 560 (567)
.+...
T Consensus 182 ~~~~~ 186 (253)
T PF10647_consen 182 LGRSA 186 (253)
T ss_pred EeCCC
Confidence 66543
No 409
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.08 E-value=0.02 Score=38.91 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKS 321 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~ 321 (567)
...|.+++|+|..++||.|..+|.|.||.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5443
No 410
>PLN02153 epithiospecifier protein
Probab=96.07 E-value=0.96 Score=45.75 Aligned_cols=173 Identities=10% Similarity=0.006 Sum_probs=80.5
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeeeEEEe-------CCeeE-EEEecCCCEEEEEECC-----------CeEEEEE
Q 008393 385 DDLICSCDGD-----GEIRYWSINNGSCTRVFK-------GGTAQ-MRFQPHLGRYLAAAAE-----------NVVSILD 440 (567)
Q Consensus 385 ~~li~s~~~d-----g~I~iwd~~~~~~~~~~~-------~~~~~-~~~~~~~~~l~~~~~d-----------g~I~i~d 440 (567)
+.+++.|+.+ ..+.+||+.+.+....-. ..... .....++..++.++.+ ..|.+||
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd 165 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN 165 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence 4566677653 357889988766543211 11111 1122233445555532 2578899
Q ss_pred CCCCeEEEEecCC----CC-CeeEEEEcCCCCEEEEEeC--------------CeEEEEeCCCCCCCceEEEeec-C-CC
Q 008393 441 AETQACRLSLQGH----TK-PIDSVCWDPSGELLASVSE--------------DSVRVWTVGSGSEGECVHELSC-N-GN 499 (567)
Q Consensus 441 ~~~~~~~~~~~~h----~~-~V~~l~~sp~g~~l~s~s~--------------d~I~iwd~~~~~~~~~i~~~~~-~-~~ 499 (567)
.++.+-.. +... .. .-.+++. -++++++.++. +.|.+||+.+.. ...+..... . ..
T Consensus 166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~~~~g~~P~~r 242 (341)
T PLN02153 166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEVETTGAKPSAR 242 (341)
T ss_pred CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEeccccCCCCCCc
Confidence 88764332 1111 11 1112222 34565554431 258888887542 122211100 0 11
Q ss_pred ceEEEEEeCCCCeEEEEEcC--------------CeEEEEECCCCcEEEeccc------cCC--eeEEEEecCCCEEEEE
Q 008393 500 KFHSCVFHPTYPSLLVIGCY--------------QSLELWNMSENKTMTLTAH------EGL--IAALAVSTETGYVASA 557 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~d--------------g~I~iwd~~~~~~~~~~~h------~~~--V~~l~~spdg~~l~s~ 557 (567)
...+ +...++..++.|+.. +.|+.||+.+.....+... ... ..++.+.-++++++.|
T Consensus 243 ~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g 321 (341)
T PLN02153 243 SVFA-HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG 321 (341)
T ss_pred ceee-eEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence 1122 222345666666641 2688999887765544211 111 1233333445677777
Q ss_pred ECCC
Q 008393 558 SHDK 561 (567)
Q Consensus 558 s~Dg 561 (567)
|.++
T Consensus 322 G~~~ 325 (341)
T PLN02153 322 GKLP 325 (341)
T ss_pred CcCC
Confidence 7643
No 411
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.01 E-value=1.8 Score=42.66 Aligned_cols=222 Identities=12% Similarity=0.119 Sum_probs=105.7
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEecc--C---CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMG--H---SASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~--h---~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
...+.+|.|.....-+++|. .+. |+.....++....... . .....+|.|.. ...+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~--il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~--~~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGT--ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDG--NEGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTE--EEEESSTTSS-EE-----S-----EEEEEEEET--TEEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecCCEEEEEec-CCE--EEEECCCCccccccccCCCccceeeEEEEEecC--CceEEEc-CCc-eEEEecC
Confidence 44789999985555555554 453 3444443443322211 1 22366777764 3344444 344 4444444
Q ss_pred CCeeeEEE------eCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-e
Q 008393 404 NGSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-S 476 (567)
Q Consensus 404 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~ 476 (567)
.++.-..+ .+....+....+ +...+++..|.|+.-.-....-......-...+..+..++||.+++++..+ .
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~-~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~ 167 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD-GSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNF 167 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET-TEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSE
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC-CcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccE
Confidence 44432221 222223333333 344445555554443322222222334455778889999999999999888 6
Q ss_pred EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC-CCCcEEE---ec--cccCCeeEEEEecC
Q 008393 477 VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM-SENKTMT---LT--AHEGLIAALAVSTE 550 (567)
Q Consensus 477 I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~-~~~~~~~---~~--~h~~~V~~l~~spd 550 (567)
..-||-.. . .-...-......|..+.|.|++...+ ....|.|++=+. ...+... .. ...-.+..++|.++
T Consensus 168 ~~s~~~G~--~-~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~ 243 (302)
T PF14870_consen 168 YSSWDPGQ--T-TWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP 243 (302)
T ss_dssp EEEE-TT---S-S-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred EEEecCCC--c-cceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence 67787532 1 12222223467899999999987544 558888888872 2222221 11 12234789999988
Q ss_pred CCEEEEEECCCcE
Q 008393 551 TGYVASASHDKFV 563 (567)
Q Consensus 551 g~~l~s~s~Dg~I 563 (567)
+...|+|+. |.|
T Consensus 244 ~~~wa~gg~-G~l 255 (302)
T PF14870_consen 244 NEIWAVGGS-GTL 255 (302)
T ss_dssp S-EEEEEST-T-E
T ss_pred CCEEEEeCC-ccE
Confidence 877776654 444
No 412
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=95.97 E-value=2.1 Score=43.26 Aligned_cols=185 Identities=17% Similarity=0.176 Sum_probs=110.0
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEEC----CCCCe--EEEEe-CC---CcEEEEEcCCCCceeEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFS----PSMPR--LATSS-FD---KTVRVWDADNPGYSLRT 367 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fs----p~~~~--l~s~s-~d---g~I~iwd~~~~~~~~~~ 367 (567)
...+++....++-+.+||++ |+.+..+.. +.++.+..- -+++. |+.++ .+ .+|++|.++.....+..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~ 143 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD 143 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence 44577777788899999986 555555542 223333221 13332 44444 32 46999988742233333
Q ss_pred ecc-------CCCcEEEEEEc--C-CCCeEEEEEeCCCcEEEEECC---CC----eeeEEEeC--CeeEEEEecCCCEEE
Q 008393 368 FMG-------HSASVMSLDFH--P-NKDDLICSCDGDGEIRYWSIN---NG----SCTRVFKG--GTAQMRFQPHLGRYL 428 (567)
Q Consensus 368 ~~~-------h~~~V~~l~~~--p-~~~~li~s~~~dg~I~iwd~~---~~----~~~~~~~~--~~~~~~~~~~~~~l~ 428 (567)
+.. ....++.+|+. + ++..+++....+|.+..|.+. .+ +.++.|.. .+..+......+.++
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY 223 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY 223 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence 321 12347788874 2 456677788889999888775 23 34666653 567788888889999
Q ss_pred EEECCCeEEEEECCC-----CeEEEEecC--CCCCeeEEEEcC--CCC-EEEEEeCC--eEEEEeCCCC
Q 008393 429 AAAAENVVSILDAET-----QACRLSLQG--HTKPIDSVCWDP--SGE-LLASVSED--SVRVWTVGSG 485 (567)
Q Consensus 429 ~~~~dg~I~i~d~~~-----~~~~~~~~~--h~~~V~~l~~sp--~g~-~l~s~s~d--~I~iwd~~~~ 485 (567)
++-++.-|.-|+.+- ++.+....+ ....|..|++.. +++ ||+..+.+ ...||+....
T Consensus 224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 999999999999863 233333332 345677887753 433 66666655 8999998643
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.93 E-value=3.7 Score=45.73 Aligned_cols=269 Identities=13% Similarity=0.091 Sum_probs=145.2
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEECCC--CCeEEEEeCCCcEEEEEcCCCCc-
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPS--MPRLATSSFDKTVRVWDADNPGY- 363 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~--~~~l~s~s~dg~I~iwd~~~~~~- 363 (567)
+.++.--.|+..++.-+.+..|.-..+|.. +++.+.+--.-...-.-+.|+.+ ...|+++. .+.+++..++.-.+
T Consensus 629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl 706 (1096)
T KOG1897|consen 629 TQPISLRTFSSKSRTAVFALSDRPTVIYSS-NGKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL 706 (1096)
T ss_pred CCCcEEEEEeeCCceEEEEeCCCCEEEEec-CCcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence 445555566665544444444555555543 33333221111110111123222 22344444 34477777764222
Q ss_pred eeEEeccCCCcEEEEEEcCCCCeEEEEEeCC--------------CcEEEEECCCCeeeEEEeCC-------eeEEEEec
Q 008393 364 SLRTFMGHSASVMSLDFHPNKDDLICSCDGD--------------GEIRYWSINNGSCTRVFKGG-------TAQMRFQP 422 (567)
Q Consensus 364 ~~~~~~~h~~~V~~l~~~p~~~~li~s~~~d--------------g~I~iwd~~~~~~~~~~~~~-------~~~~~~~~ 422 (567)
.+++.. -......+++.+. ..++.+.+.- ..++++|-++.+.+..++-. +....|..
T Consensus 707 ~irtvp-l~~~prrI~~q~~-sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~ 784 (1096)
T KOG1897|consen 707 HIRTVP-LGESPRRICYQES-SLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD 784 (1096)
T ss_pred ceeeec-CCCChhheEeccc-ceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence 233332 3344566777663 2233232211 24677777777666554421 22334666
Q ss_pred C-CCEEEEEEC----------CCeEEEEECCCCeEEEEecCC--CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 423 H-LGRYLAAAA----------ENVVSILDAETQACRLSLQGH--TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 423 ~-~~~l~~~~~----------dg~I~i~d~~~~~~~~~~~~h--~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
+ +.++++|+. .|.|.+|.......+.....+ .+.+.+++. -+|++||.-+. .|++|++.+. +
T Consensus 785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In~-~vrLye~t~~---~ 859 (1096)
T KOG1897|consen 785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGINQ-SVRLYEWTTE---R 859 (1096)
T ss_pred CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecCc-EEEEEEcccc---c
Confidence 6 455566553 378888887763333222221 344555543 25666654322 7899988665 4
Q ss_pred eEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE--ECCCCcEE--EeccccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 490 CVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW--NMSENKTM--TLTAHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw--d~~~~~~~--~~~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
.++.-..+..++..+.+.-.+..+++|...+.+.+. +-.++... .-.-+..+.+++.+-.+..|+ .+..+|.+.+
T Consensus 860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~yl-gae~~gNlf~ 938 (1096)
T KOG1897|consen 860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYL-GAENSGNLFT 938 (1096)
T ss_pred eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEE-eecccccEEE
Confidence 455555667788888999999999999999876654 44454455 334677888888886555444 4555666654
No 414
>PRK13684 Ycf48-like protein; Provisional
Probab=95.93 E-value=2.2 Score=43.01 Aligned_cols=267 Identities=10% Similarity=0.079 Sum_probs=130.4
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeee----cccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNL----EEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNP 361 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l----~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~ 361 (567)
...+++++|..+.+-+|+|. +|.| |... .|+.-... ......+.++.|.++ ..+++ +..+. ||.....
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCC
Confidence 55788999986666677664 4543 3222 22221111 112334778888654 33443 44553 3333333
Q ss_pred CceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE----EeCCeeEEEEecCCCEEEEEECCC
Q 008393 362 GYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV----FKGGTAQMRFQPHLGRYLAAAAEN 434 (567)
Q Consensus 362 ~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~dg 434 (567)
+.....+. ........+.....+ .+++. +..|.|..=+ ..++.-.. ..+....+.+.++ +.+++.+..|
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~-g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~-g~~v~~g~~G 193 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGPG-TAEMA-TNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPD-GKYVAVSSRG 193 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECCC-cceee-eccceEEEEC-CCCCCceeCcCCCcceEEEEEECCC-CeEEEEeCCc
Confidence 43333321 011112222222222 23323 3344332221 12221111 1234556777776 4566666667
Q ss_pred eEEEE-ECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEe-ecCCCceEEEEEeCCCCe
Q 008393 435 VVSIL-DAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHEL-SCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 435 ~I~i~-d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~-~~~~~~i~~~~~sp~~~~ 512 (567)
.+..- |.....-......-...++++.+.+++.+++++..+.+++=....+.....+..- ......+..+.+.+++.
T Consensus 194 ~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~- 272 (334)
T PRK13684 194 NFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE- 272 (334)
T ss_pred eEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-
Confidence 66543 2221111112223446788999999999887776655432223333322221110 11224577888998776
Q ss_pred EEEEEcCCeEEEEECCCCcEEE-ec---cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 513 LLVIGCYQSLELWNMSENKTMT-LT---AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 513 l~~~~~dg~I~iwd~~~~~~~~-~~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
+++++.+|.|.. ....++... .. .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 273 ~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 273 IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 566666776653 445554432 21 2223577788876666655 55677776653
No 415
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.90 E-value=2.4 Score=43.33 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=79.2
Q ss_pred cEEEEEECCCCCeEEEEe-----------CCC-cEEEEEcCC-CCc--eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCC
Q 008393 331 LITDVRFSPSMPRLATSS-----------FDK-TVRVWDADN-PGY--SLRTFMGHSASVMSLDFHPNKDDLICSCDGDG 395 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~s-----------~dg-~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg 395 (567)
....|+|.++|+++++-. ..+ .|.+++-.+ .+. ....+.........|++.+++ ++++ ...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~~- 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA-TPP- 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe-CCC-
Confidence 466788999888766643 223 676665432 222 223443334456889998886 5544 333
Q ss_pred cEEEE-ECCCC-----eee---EEEeCC-------eeEEEEecCCCEEEEEEC-------------------CCeEEEEE
Q 008393 396 EIRYW-SINNG-----SCT---RVFKGG-------TAQMRFQPHLGRYLAAAA-------------------ENVVSILD 440 (567)
Q Consensus 396 ~I~iw-d~~~~-----~~~---~~~~~~-------~~~~~~~~~~~~l~~~~~-------------------dg~I~i~d 440 (567)
.|..| |.... +.. ..+... ...+.|.|++..+++.+. .+.|.-+|
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 45444 54321 111 112221 346889998766665442 14567777
Q ss_pred CCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 441 AETQACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
..+++....-.++ .....++|+++|+++++-..+
T Consensus 171 pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 171 PDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 7766544333333 345689999999988765543
No 416
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=95.86 E-value=3.9 Score=46.26 Aligned_cols=176 Identities=13% Similarity=0.201 Sum_probs=99.8
Q ss_pred ccCccEEEEEEC---C----CCCeEEEEeCCCcEEEEEc------CCCC--------ceeEEecc---CCCcEEEEEEcC
Q 008393 327 EHSSLITDVRFS---P----SMPRLATSSFDKTVRVWDA------DNPG--------YSLRTFMG---HSASVMSLDFHP 382 (567)
Q Consensus 327 ~h~~~V~~i~fs---p----~~~~l~s~s~dg~I~iwd~------~~~~--------~~~~~~~~---h~~~V~~l~~~p 382 (567)
....+|..|+|. . ..++|++= ....+.|+.. .... .++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456778888887 2 12344443 4445666661 1100 12233321 234567899999
Q ss_pred CCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEE
Q 008393 383 NKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCW 462 (567)
Q Consensus 383 ~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~ 462 (567)
....-|+..+..|...||++......+. ....+.....|.| ++|... ......|+|
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~-------------~~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W 211 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKS-------------SNLRLSRNISGSI-IFDPEE----------LSNWKRILW 211 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCC-------------cceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence 8777888999999999999922111100 0111111222333 233221 144567899
Q ss_pred cCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCC-eEEEEEcCCeEEEEECCC
Q 008393 463 DPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYP-SLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 463 sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~-~l~~~~~dg~I~iwd~~~ 529 (567)
..+...|+.++...+.++|+.+......+ ........|..+.-++... ++++. ....|...++..
T Consensus 212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS 277 (765)
T ss_pred cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence 99888888888889999999876432321 2223456677777777632 22222 335677777665
No 417
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.83 E-value=1.9 Score=48.17 Aligned_cols=66 Identities=14% Similarity=0.089 Sum_probs=45.9
Q ss_pred EEEEEeCCCcEEEEECCCCeeeEEEeCCee---------------EEEEec--CCCEEEEEEC----------CCeEEEE
Q 008393 387 LICSCDGDGEIRYWSINNGSCTRVFKGGTA---------------QMRFQP--HLGRYLAAAA----------ENVVSIL 439 (567)
Q Consensus 387 li~s~~~dg~I~iwd~~~~~~~~~~~~~~~---------------~~~~~~--~~~~l~~~~~----------dg~I~i~ 439 (567)
.|+.++.|+.|.-.|.++++.+..|..... .+.-.| .++.+++++. +|.|+-|
T Consensus 262 rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~ 341 (764)
T TIGR03074 262 RIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAF 341 (764)
T ss_pred EEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEE
Confidence 444778899999999999998876642110 001111 2466777653 5889999
Q ss_pred ECCCCeEEEEecC
Q 008393 440 DAETQACRLSLQG 452 (567)
Q Consensus 440 d~~~~~~~~~~~~ 452 (567)
|.++++.+..+..
T Consensus 342 Da~TGkl~W~~~~ 354 (764)
T TIGR03074 342 DVNTGALVWAWDP 354 (764)
T ss_pred ECCCCcEeeEEec
Confidence 9999999988763
No 418
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.80 E-value=0.42 Score=49.91 Aligned_cols=170 Identities=13% Similarity=0.205 Sum_probs=101.8
Q ss_pred CcEEEEEEcCCCCeEEEEEe--CCCcEEEEECCCCeeeEEEeCCeeEEEEecC----CCEEEEEECCCeEEEEECC----
Q 008393 373 ASVMSLDFHPNKDDLICSCD--GDGEIRYWSINNGSCTRVFKGGTAQMRFQPH----LGRYLAAAAENVVSILDAE---- 442 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~dg~I~i~d~~---- 442 (567)
.+|..++|. ||+.++.+.- .+|.+++=|-. .+..| .++..+.|.|- ...+++.-....|.+|-+.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~ 94 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT 94 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence 467888887 5677776643 24444433321 22222 35667778775 3468888889999999864
Q ss_pred -CCeEEEEecCCC---CC--eeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEE
Q 008393 443 -TQACRLSLQGHT---KP--IDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLV 515 (567)
Q Consensus 443 -~~~~~~~~~~h~---~~--V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~ 515 (567)
+.+.+..-..+- -+ -..+.|+|...+|+.-... .-.++++..... .....+ ...+.|+|.+|..||.+|++
T Consensus 95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence 223322222111 11 1356799999988887766 435566654322 222233 45678999999999998888
Q ss_pred EEcCC-eEEEEECCCCcEE-----EeccccCCeeEEEEec
Q 008393 516 IGCYQ-SLELWNMSENKTM-----TLTAHEGLIAALAVST 549 (567)
Q Consensus 516 ~~~dg-~I~iwd~~~~~~~-----~~~~h~~~V~~l~~sp 549 (567)
+-... .-+|||-...... .+..-.+.|.++.-.-
T Consensus 173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ 212 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATV 212 (671)
T ss_pred EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEec
Confidence 76554 6789986544322 2334445666665443
No 419
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=0.12 Score=57.36 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=58.2
Q ss_pred cCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEEE---CCCCCeEEEEeCCCcEEEEEc
Q 008393 285 ASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVRF---SPSMPRLATSSFDKTVRVWDA 358 (567)
Q Consensus 285 ~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~f---sp~~~~l~s~s~dg~I~iwd~ 358 (567)
.-.++|++++|+-||++++.|-.+|.|.+||+.+++..+.+..|..+.+.+.+ ..++..++++...|. +|.+
T Consensus 128 ~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 34789999999999999999999999999999999999999887776665544 445557777777775 5554
No 420
>PHA03098 kelch-like protein; Provisional
Probab=95.79 E-value=0.38 Score=52.03 Aligned_cols=181 Identities=12% Similarity=0.067 Sum_probs=88.0
Q ss_pred CCCCeEEEEeCCC------cEEEEeCCCCeeeee--ecccCccEEEEEECCCCCeEEEEeCC-----CcEEEEEcCCCCc
Q 008393 297 SDGKLLATGGHDK------KAVLWHTDTLKSKTN--LEEHSSLITDVRFSPSMPRLATSSFD-----KTVRVWDADNPGY 363 (567)
Q Consensus 297 ~dg~~lasg~~dg------~I~vwd~~~~~~~~~--l~~h~~~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~~~~~ 363 (567)
.++.+++.||.++ .+..||..+.+.... +.........+.+ ++..++.|+.+ ..+..||..+...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 4556777777543 577888876654322 1111111222222 56677778765 3477788876432
Q ss_pred eeEEecc--CCCcEEEEEEcCCCCeEEEEEeCC------CcEEEEECCCCeeeEEEeC--Ce-eEEEEecCCCEEEEEEC
Q 008393 364 SLRTFMG--HSASVMSLDFHPNKDDLICSCDGD------GEIRYWSINNGSCTRVFKG--GT-AQMRFQPHLGRYLAAAA 432 (567)
Q Consensus 364 ~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~d------g~I~iwd~~~~~~~~~~~~--~~-~~~~~~~~~~~l~~~~~ 432 (567)
. .... +...-.+++.. ++.+++.|+.+ ..+..||+.+.+....-.. .. ...+...++..++.|+.
T Consensus 371 ~--~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~ 446 (534)
T PHA03098 371 R--EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI 446 (534)
T ss_pred e--eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCc
Confidence 2 1111 11111122222 34566667632 4588899887665432211 11 11112223344444443
Q ss_pred C--------CeEEEEECCCCeEEEE--ecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCC
Q 008393 433 E--------NVVSILDAETQACRLS--LQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGSG 485 (567)
Q Consensus 433 d--------g~I~i~d~~~~~~~~~--~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~ 485 (567)
+ ..+.+||..+.+-... +...... .+++. -++++++.|+.+ .|.+||..+.
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred cCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 2 2488999887643321 1111111 12222 256677776643 5777777653
No 421
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=95.74 E-value=0.0098 Score=66.80 Aligned_cols=10 Identities=20% Similarity=0.086 Sum_probs=4.4
Q ss_pred cCCCcccccC
Q 008393 33 NNRSMSLGKD 42 (567)
Q Consensus 33 ~~~~~~~~~~ 42 (567)
++.+|--++-
T Consensus 2039 ~~q~m~~~~q 2048 (2220)
T KOG3598|consen 2039 MNQNMGGMNQ 2048 (2220)
T ss_pred cccchhhhhc
Confidence 4555443333
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.66 E-value=0.59 Score=47.82 Aligned_cols=102 Identities=10% Similarity=0.026 Sum_probs=59.4
Q ss_pred CCeeEEEEcCCCCEEEEEeCCeEEEE-eCCCCC----CCceE-EEeecC----CCceEEEEEeCCCCeEEEEEcC-----
Q 008393 455 KPIDSVCWDPSGELLASVSEDSVRVW-TVGSGS----EGECV-HELSCN----GNKFHSCVFHPTYPSLLVIGCY----- 519 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d~I~iw-d~~~~~----~~~~i-~~~~~~----~~~i~~~~~sp~~~~l~~~~~d----- 519 (567)
.....|++.++| +++ +....|..| |..... ..+.+ ..+... ......++|.|||.+.++.+..
T Consensus 72 ~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~ 149 (367)
T TIGR02604 72 SMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKV 149 (367)
T ss_pred CCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCcee
Confidence 456789999988 444 445555544 543211 11222 223221 3446788999999866655421
Q ss_pred --------------CeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 520 --------------QSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 520 --------------g~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+.|.-++..+++...+.........++|+++|+++++-.
T Consensus 150 ~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 150 TRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 456666666655443333334467899999998877644
No 423
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.65 E-value=2.1 Score=40.69 Aligned_cols=207 Identities=15% Similarity=0.109 Sum_probs=127.8
Q ss_pred EEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE-
Q 008393 332 ITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV- 410 (567)
Q Consensus 332 V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~- 410 (567)
-..++-.+||...+++...+.|--.|..+ ++....-.+....-..|..-|++...|+-. ..-|.-.|-++.+..+.
T Consensus 64 p~dvapapdG~VWft~qg~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f~ 140 (353)
T COG4257 64 PFDVAPAPDGAVWFTAQGTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRFP 140 (353)
T ss_pred ccccccCCCCceEEecCccccceecCCCC-CceEEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEee
Confidence 45667788898888888888888888887 444444445556677888899988777322 22566677766554332
Q ss_pred E-----eCCeeEEEEecCCCEEEEEEC---------CCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-
Q 008393 411 F-----KGGTAQMRFQPHLGRYLAAAA---------ENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED- 475 (567)
Q Consensus 411 ~-----~~~~~~~~~~~~~~~l~~~~~---------dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d- 475 (567)
+ ........|.+.+...+++.. .+.|++|+.-. ...-+.||..|+|...++.-.+
T Consensus 141 lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq----------G~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 141 LPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ----------GGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred cccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC----------CCCCcceEECCCCcEEEEecccc
Confidence 1 134566778888877777653 13455554432 2345678999999988877666
Q ss_pred eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE--EeccccCCeeEEEEecCCC
Q 008393 476 SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM--TLTAHEGLIAALAVSTETG 552 (567)
Q Consensus 476 ~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~--~~~~h~~~V~~l~~spdg~ 552 (567)
.|-..|..++ ..+.+..-.........+-.+|.+..-++....+.++.||-...... .+.+....-.++.....++
T Consensus 211 aiaridp~~~-~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr 288 (353)
T COG4257 211 AIARIDPFAG-HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR 288 (353)
T ss_pred ceEEcccccC-CcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence 7777777665 22222222222333445556777776677666678888887655433 3333333444444444443
No 424
>PRK13684 Ycf48-like protein; Provisional
Probab=95.63 E-value=2.8 Score=42.16 Aligned_cols=221 Identities=11% Similarity=0.094 Sum_probs=108.7
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec----cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM----GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~ 404 (567)
...+.+|.|.....-+++|. +|. ||...+.+....... .....+.++.|..+ . .+++ +..+.|..- .+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~-~G~--il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~-~~~~-G~~g~i~~S-~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGS-NRT--LLETNDGGETWEERSLDLPEENFRLISISFKGD-E-GWIV-GQPSLLLHT-TDG 117 (334)
T ss_pred CCceEEEEEeCCCcEEEEEC-CCE--EEEEcCCCCCceECccCCcccccceeeeEEcCC-c-EEEe-CCCceEEEE-CCC
Confidence 45688899986555566664 443 444433333322221 12234677877643 2 3433 344443321 122
Q ss_pred CeeeEEE------eCCeeEEEEecCCCEEEEEECCCeEEEEEC--CCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCe
Q 008393 405 GSCTRVF------KGGTAQMRFQPHLGRYLAAAAENVVSILDA--ETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDS 476 (567)
Q Consensus 405 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~--~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~ 476 (567)
++.-..+ .+....+.... .+.+++++..+.|..-+- ++.+.+. ..-...+.++.+.+++.+++++..+.
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~g~~G~i~~S~DgG~tW~~~~--~~~~g~~~~i~~~~~g~~v~~g~~G~ 194 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALG-PGTAEMATNVGAIYRTTDGGKNWEALV--EDAAGVVRNLRRSPDGKYVAVSSRGN 194 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEEC-CCcceeeeccceEEEECCCCCCceeCc--CCCcceEEEEEECCCCeEEEEeCCce
Confidence 2211111 11111122111 123334444444433322 1222221 12245688999999998888777773
Q ss_pred -EEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe-cc----ccCCeeEEEEecC
Q 008393 477 -VRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL-TA----HEGLIAALAVSTE 550 (567)
Q Consensus 477 -I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~-~~----h~~~V~~l~~spd 550 (567)
.+.+|-. +..... ........++.+.+.++++.+++ +..|.+++=....+..... .. -...+.++.+.++
T Consensus 195 i~~s~~~g-g~tW~~--~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~ 270 (334)
T PRK13684 195 FYSTWEPG-QTAWTP--HQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTP 270 (334)
T ss_pred EEEEcCCC-CCeEEE--eeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCccccccCCccccccceeeEEEcCC
Confidence 3333321 111111 12234567888999999886555 4567665433444444321 11 1235788899888
Q ss_pred CCEEEEEECCCcEE
Q 008393 551 TGYVASASHDKFVK 564 (567)
Q Consensus 551 g~~l~s~s~Dg~I~ 564 (567)
+..++ ++.+|.|.
T Consensus 271 ~~~~~-~G~~G~v~ 283 (334)
T PRK13684 271 GEIWA-GGGNGTLL 283 (334)
T ss_pred CCEEE-EcCCCeEE
Confidence 77555 44566554
No 425
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.73 Score=41.78 Aligned_cols=177 Identities=15% Similarity=0.107 Sum_probs=101.3
Q ss_pred CCCeEEEEeC--CCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCeeE
Q 008393 340 SMPRLATSSF--DKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTAQ 417 (567)
Q Consensus 340 ~~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~~ 417 (567)
++.++.+.+. ...|++||+.+ +..+....-....+..=-...-++.+..-.-.+|.-.++|.++.+++..+.-....
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~-gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTT-GQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccC-ceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence 4455555544 34699999997 44333222111122211111224445545567889999999999988877655555
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEE----EecC-CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceE
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRL----SLQG-HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECV 491 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~----~~~~-h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i 491 (567)
-....++..++.+.....+..-|.++..... ++.+ .-..++.+.|- +|.+.|-.-.. .|...+..+|+....+
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~wi 212 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWI 212 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEE
Confidence 5555667778888888888888887754332 2222 11233445552 56666655555 6666666665321111
Q ss_pred ---------EEeecCCCceEEEEEeCCCCeEEEEEc
Q 008393 492 ---------HELSCNGNKFHSCVFHPTYPSLLVIGC 518 (567)
Q Consensus 492 ---------~~~~~~~~~i~~~~~sp~~~~l~~~~~ 518 (567)
..-..+.+-.+.+++.|+...++..+.
T Consensus 213 dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 213 DLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 111123445778899998866665543
No 426
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=95.46 E-value=1.9 Score=43.26 Aligned_cols=100 Identities=10% Similarity=0.081 Sum_probs=49.6
Q ss_pred CeEEEEEeCC-----CcEEEEECCCCeee---EEEe---CCee-EEEEecCCCEEEEEEC-----CCeEEEEECCCCeEE
Q 008393 385 DDLICSCDGD-----GEIRYWSINNGSCT---RVFK---GGTA-QMRFQPHLGRYLAAAA-----ENVVSILDAETQACR 447 (567)
Q Consensus 385 ~~li~s~~~d-----g~I~iwd~~~~~~~---~~~~---~~~~-~~~~~~~~~~l~~~~~-----dg~I~i~d~~~~~~~ 447 (567)
+.+++.|+.+ ..+..||+.+.+.. ..+. .... ..+..-++..++.++. ...+..||+.+.+-.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 4566677754 35777787766531 1111 1111 1111223344444543 247889998876432
Q ss_pred E--EecCCCCCeeEEEEcCCCCEEEEEeCC-----eEEEEeCCCC
Q 008393 448 L--SLQGHTKPIDSVCWDPSGELLASVSED-----SVRVWTVGSG 485 (567)
Q Consensus 448 ~--~~~~h~~~V~~l~~sp~g~~l~s~s~d-----~I~iwd~~~~ 485 (567)
. .+.. .......+..-++++.+.|+.+ .+.+||+.+.
T Consensus 153 ~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 2 2221 1122223333456777777654 2567888754
No 427
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.43 E-value=0.012 Score=59.29 Aligned_cols=137 Identities=13% Similarity=0.211 Sum_probs=99.9
Q ss_pred EEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe
Q 008393 333 TDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK 412 (567)
Q Consensus 333 ~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~ 412 (567)
....|-+.+.-++.++.+..|..||-.. ...... ..++....++|..+++.+++.+-..+.+.+||+.+......-.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag--q~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG--QVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc--ceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 3446777777799999999999999764 222222 2456667889988888888888889999999998654332222
Q ss_pred CCe---eEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEE
Q 008393 413 GGT---AQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASV 472 (567)
Q Consensus 413 ~~~---~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~ 472 (567)
++. .-+.|++....++.+...+.+.||+..+.+.+...-.|...+++++|.+.+..+..+
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecC
Confidence 221 225688888888888889999999999887776666688999999998877554433
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.42 E-value=2.8 Score=40.64 Aligned_cols=194 Identities=16% Similarity=0.131 Sum_probs=113.3
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCC-------CCeeeeeecc-----cCccEEEEEECCCCC------------eEEE
Q 008393 291 ICCHFSSDGKLLATGGHDKKAVLWHTD-------TLKSKTNLEE-----HSSLITDVRFSPSMP------------RLAT 346 (567)
Q Consensus 291 ~~l~~s~dg~~lasg~~dg~I~vwd~~-------~~~~~~~l~~-----h~~~V~~i~fsp~~~------------~l~s 346 (567)
+.|+|+|.+-+-++....+...+||.. ...++.++.. .....+.+.|+.... .++.
T Consensus 26 WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif 105 (336)
T TIGR03118 26 WGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLF 105 (336)
T ss_pred ceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEE
Confidence 579999999888888888999999986 1123344432 234577788875322 3688
Q ss_pred EeCCCcEEEEEcCCCCc----eeEEec-cCCCcEE-EEEEcC--CCCeEEEEEeCCCcEEEEECCCCeee--EEEeCCe-
Q 008393 347 SSFDKTVRVWDADNPGY----SLRTFM-GHSASVM-SLDFHP--NKDDLICSCDGDGEIRYWSINNGSCT--RVFKGGT- 415 (567)
Q Consensus 347 ~s~dg~I~iwd~~~~~~----~~~~~~-~h~~~V~-~l~~~p--~~~~li~s~~~dg~I~iwd~~~~~~~--~~~~~~~- 415 (567)
+++||+|.-|...-... .+..+. ...+.|+ .+++.. .+..|+++--..++|.+||-.-.+.. ..|..+.
T Consensus 106 ~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~i 185 (336)
T TIGR03118 106 VTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPAL 185 (336)
T ss_pred EeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCC
Confidence 89999999998542111 112222 1224443 455543 35667767677899999986533221 1111110
Q ss_pred ---------------eEE---EEecCCCEEEEEECCCeEEEEECCCCeEEEEec--CCCCCeeEEEEcC------CCCEE
Q 008393 416 ---------------AQM---RFQPHLGRYLAAAAENVVSILDAETQACRLSLQ--GHTKPIDSVCWDP------SGELL 469 (567)
Q Consensus 416 ---------------~~~---~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~--~h~~~V~~l~~sp------~g~~l 469 (567)
..+ .-.+....-+.+..-|.|.+||+... .+.++. +.-..-+.|+..| .|.+|
T Consensus 186 PagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~-l~~r~as~g~LNaPWG~a~APa~FG~~sg~lL 264 (336)
T TIGR03118 186 PAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ-LLRRVASSGRLNAPWGLAIAPESFGSLSGALL 264 (336)
T ss_pred CCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCc-EEEEeccCCcccCCceeeeChhhhCCCCCCeE
Confidence 001 11222222233334578999998654 333342 2334456677655 46677
Q ss_pred EEEeCC-eEEEEeCCCC
Q 008393 470 ASVSED-SVRVWTVGSG 485 (567)
Q Consensus 470 ~s~s~d-~I~iwd~~~~ 485 (567)
+.--.| +|..||..++
T Consensus 265 VGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 265 VGNFGDGTINAYDPQSG 281 (336)
T ss_pred EeecCCceeEEecCCCC
Confidence 665556 9999999877
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.39 E-value=1.8 Score=39.75 Aligned_cols=49 Identities=10% Similarity=0.038 Sum_probs=37.3
Q ss_pred CeEEEEeCCCcEEEEeCC--CCeeeeeecccCccEEEEEECCCCCeEEEEeC
Q 008393 300 KLLATGGHDKKAVLWHTD--TLKSKTNLEEHSSLITDVRFSPSMPRLATSSF 349 (567)
Q Consensus 300 ~~lasg~~dg~I~vwd~~--~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~ 349 (567)
+.|+.+...+.|.+|++. ..+...++..- +.|..+.++..|+||+|--.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 455555667889999987 44556666654 77999999999999999744
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=2.4 Score=45.72 Aligned_cols=180 Identities=13% Similarity=0.108 Sum_probs=90.0
Q ss_pred CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee--EEeccCCCcEEEEEEcCCCC
Q 008393 308 DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL--RTFMGHSASVMSLDFHPNKD 385 (567)
Q Consensus 308 dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~~p~~~ 385 (567)
--.|+||+. +|..+..+.-....+..+.|+.+. .|++...+|+++||++-...... ..+......|..+.|..+|
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G- 139 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG- 139 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc-
Confidence 456888876 466666655444578899999765 67777899999999997422111 0111223345555555444
Q ss_pred eEEEEEeCCCcEEEEECCCCeeeEEEeC------CeeEE-EEecCCCEEEEEECC--CeEEEEECCCC-eEEEEecCCCC
Q 008393 386 DLICSCDGDGEIRYWSINNGSCTRVFKG------GTAQM-RFQPHLGRYLAAAAE--NVVSILDAETQ-ACRLSLQGHTK 455 (567)
Q Consensus 386 ~li~s~~~dg~I~iwd~~~~~~~~~~~~------~~~~~-~~~~~~~~l~~~~~d--g~I~i~d~~~~-~~~~~~~~h~~ 455 (567)
++ .-..+|.|.+-+-......+.++. ...+. ++.+.....+...-+ -...++-.... .....+.....
T Consensus 140 -Va-vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 140 -VA-VLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred -eE-EEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence 22 333355554443222222222221 11111 122221111111111 00111111111 11112222235
Q ss_pred CeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEee
Q 008393 456 PIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELS 495 (567)
Q Consensus 456 ~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~ 495 (567)
.+..+..||++.+|+--... .|.+-+.... +++.++.
T Consensus 218 ~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccC
Confidence 67788999999999988877 8888777543 4444444
No 431
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.21 E-value=4.3 Score=41.56 Aligned_cols=150 Identities=14% Similarity=0.139 Sum_probs=89.3
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCeeeeeeccc--CccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCC-
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEH--SSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHS- 372 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h--~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~- 372 (567)
.-||+ +.++..+|.|.-.|.++++.+.....- ...+..-.+..+| .|+.++.++.++.+|..+ +..+-.+....
T Consensus 66 ~~dg~-v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G-~i~~g~~~g~~y~ld~~~-G~~~W~~~~~~~ 142 (370)
T COG1520 66 DGDGT-VYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG-KIYVGSWDGKLYALDAST-GTLVWSRNVGGS 142 (370)
T ss_pred eeCCe-EEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCC-eEEEecccceEEEEECCC-CcEEEEEecCCC
Confidence 33444 444467888888888888866543322 1233333333356 488888899888888865 55444444333
Q ss_pred CcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee-E--EE--EecCCCEEEEEEC--CCeEEEEECCCCe
Q 008393 373 ASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-Q--MR--FQPHLGRYLAAAA--ENVVSILDAETQA 445 (567)
Q Consensus 373 ~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~--~~--~~~~~~~l~~~~~--dg~I~i~d~~~~~ 445 (567)
..+..-.+..+ ..++.++.++.+...|..+++....+..... . .. .....+.++++.. ++.+.-+|.+++.
T Consensus 143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence 11222222223 2444555789999999999988776544321 1 11 1123455666666 6678888998888
Q ss_pred EEEEe
Q 008393 446 CRLSL 450 (567)
Q Consensus 446 ~~~~~ 450 (567)
.....
T Consensus 221 ~~w~~ 225 (370)
T COG1520 221 LKWSQ 225 (370)
T ss_pred Eeeee
Confidence 77764
No 432
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.10 E-value=0.24 Score=55.34 Aligned_cols=142 Identities=11% Similarity=0.025 Sum_probs=92.3
Q ss_pred cEEEEEECCCCCeEEEE--eCCCcEEEEEcCCCCce----eE------EeccCCCcEEEEEEcCCCCeEEEEEeCCCcEE
Q 008393 331 LITDVRFSPSMPRLATS--SFDKTVRVWDADNPGYS----LR------TFMGHSASVMSLDFHPNKDDLICSCDGDGEIR 398 (567)
Q Consensus 331 ~V~~i~fsp~~~~l~s~--s~dg~I~iwd~~~~~~~----~~------~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~ 398 (567)
.|..+...+|++..++. +.+-.|..||+++-... .+ +.......+.++.|.|.=....+.+..|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 35555556676654433 34457889998752111 11 11122345667888887665666788899999
Q ss_pred EEECCCCee-eE--EEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecC----CCCCeeEEEEcCCCCEEEE
Q 008393 399 YWSINNGSC-TR--VFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQG----HTKPIDSVCWDPSGELLAS 471 (567)
Q Consensus 399 iwd~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~----h~~~V~~l~~sp~g~~l~s 471 (567)
+..+..... +. .+....++++|+|.|..++++-..|++.-|...-.. ...+.+ ....|.+|+|-....++++
T Consensus 182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeEEEE
Confidence 988764332 12 234567899999999999999999999988765432 122221 1367999999988877776
Q ss_pred Ee
Q 008393 472 VS 473 (567)
Q Consensus 472 ~s 473 (567)
-+
T Consensus 261 y~ 262 (1405)
T KOG3630|consen 261 YG 262 (1405)
T ss_pred ec
Confidence 54
No 433
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.04 E-value=3.7 Score=41.33 Aligned_cols=77 Identities=8% Similarity=0.018 Sum_probs=43.9
Q ss_pred EEEEecCCCCCeeEEEEcC-------CCCEEEEEeCC-eEEEEeCCCCCCCceEEEee-cCCCceEEEEEeCCCCeEEEE
Q 008393 446 CRLSLQGHTKPIDSVCWDP-------SGELLASVSED-SVRVWTVGSGSEGECVHELS-CNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 446 ~~~~~~~h~~~V~~l~~sp-------~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~-~~~~~i~~~~~sp~~~~l~~~ 516 (567)
++..+..| ..+..+.|.. .|.+|++.-.. .|....+...........+. .....+..+++.|||.++++.
T Consensus 245 P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~ 323 (331)
T PF07995_consen 245 PVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSD 323 (331)
T ss_dssp -SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE
T ss_pred cceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEE
Confidence 34445544 5566777764 34566666555 78888876443222223322 334478999999999877777
Q ss_pred EcCCeEE
Q 008393 517 GCYQSLE 523 (567)
Q Consensus 517 ~~dg~I~ 523 (567)
..+|.|+
T Consensus 324 d~~G~iy 330 (331)
T PF07995_consen 324 DSDGKIY 330 (331)
T ss_dssp -TTTTEE
T ss_pred CCCCeEe
Confidence 7777764
No 434
>PLN02153 epithiospecifier protein
Probab=95.02 E-value=4.5 Score=40.83 Aligned_cols=105 Identities=13% Similarity=0.116 Sum_probs=52.3
Q ss_pred CCCeEEEEeCC-------CcEEEEeCCCCeeeeeec--c-cCc---cEEEEEECCCCCeEEEEeCC-----CcEEEEEcC
Q 008393 298 DGKLLATGGHD-------KKAVLWHTDTLKSKTNLE--E-HSS---LITDVRFSPSMPRLATSSFD-----KTVRVWDAD 359 (567)
Q Consensus 298 dg~~lasg~~d-------g~I~vwd~~~~~~~~~l~--~-h~~---~V~~i~fsp~~~~l~s~s~d-----g~I~iwd~~ 359 (567)
++++++.|+.+ ..+.+||+.+.+-...-. . ... ....+.+ ++++++.|+.+ ..+.+||+.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 45566667653 357888887654332111 0 010 1222222 45566777653 247788887
Q ss_pred CCCceeEEecc------CCC-cEEEEEEcCCCCeEEEEEeCC-----------CcEEEEECCCCeee
Q 008393 360 NPGYSLRTFMG------HSA-SVMSLDFHPNKDDLICSCDGD-----------GEIRYWSINNGSCT 408 (567)
Q Consensus 360 ~~~~~~~~~~~------h~~-~V~~l~~~p~~~~li~s~~~d-----------g~I~iwd~~~~~~~ 408 (567)
+... ..+.. ... .-.+++.. ++.+++.|+.+ ..|.+||.++.+-.
T Consensus 110 t~~W--~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 110 KNEW--TFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEE--EEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 6332 22211 111 11222332 34566666653 24778898876644
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.00 E-value=7.5 Score=43.27 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=23.6
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
.-.|..|.++++|.+|+..|..| |.|-.+.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP 113 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELP 113 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEec
Confidence 34688999999999999999877 5555554
No 436
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.96 E-value=0.035 Score=60.05 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=71.6
Q ss_pred eeccCCCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCC--CCeeeeeec-----ccCccEEEEEECC---CCCeEEEEeCC
Q 008393 282 SVRASTSKVICCHFSS-DGKLLATGGHDKKAVLWHTD--TLKSKTNLE-----EHSSLITDVRFSP---SMPRLATSSFD 350 (567)
Q Consensus 282 ~l~~h~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~--~~~~~~~l~-----~h~~~V~~i~fsp---~~~~l~s~s~d 350 (567)
.+++-.+.|-.++|-. +...++ -.-|.+.|||++ .|+....+. .....+.-|.|+| +.-+++.+-.+
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence 4566778888888854 222222 233678889876 444333222 2233345555654 56688888889
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEEC
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~ 402 (567)
+.|++..+++... ..+.+|...+..++|...|-.++..-+-||++..|-+
T Consensus 205 ~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 205 GEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAI 254 (1283)
T ss_pred CceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEee
Confidence 9999988875332 5566799888888887665544544444555544443
No 437
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=3.9 Score=39.31 Aligned_cols=252 Identities=12% Similarity=0.035 Sum_probs=139.2
Q ss_pred CCCccceeccCCccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---eeeeeecccCccEEEEEECC
Q 008393 263 DAGGRGMDVSQGFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTL---KSKTNLEEHSSLITDVRFSP 339 (567)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~---~~~~~l~~h~~~V~~i~fsp 339 (567)
+.+.++.|+++..+..++..+... +--.++..+ |++..++..|.-+.+.|+.+. .+...+......-..++.+
T Consensus 105 ssGL~IvDIS~P~sP~~~~~lnt~-gyaygv~vs--Gn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS- 180 (370)
T COG5276 105 SSGLRIVDISTPDSPTLIGFLNTD-GYAYGVYVS--GNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS- 180 (370)
T ss_pred CCceEEEeccCCCCcceeccccCC-ceEEEEEec--CCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe-
Confidence 346678888887666666655542 333444444 778888886777778888653 3334444444444566665
Q ss_pred CCCeEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC----C
Q 008393 340 SMPRLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG----G 414 (567)
Q Consensus 340 ~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~----~ 414 (567)
|++-+.+..|+-+.|-|+.++..++..-.-. ...+.++..+++.. ++ + ..+.-+.+-|..+.+....+.. .
T Consensus 181 -Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~-y~-v-vy~egvlivd~s~~ssp~~~gsyet~~ 256 (370)
T COG5276 181 -GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRA-YL-V-VYDEGVLIVDVSGPSSPTVFGSYETSN 256 (370)
T ss_pred -cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCee-EE-E-EcccceEEEecCCCCCceEeeccccCC
Confidence 6688888899999999998866544332222 23678887776632 33 2 2355677888877664444321 1
Q ss_pred eeEE-EEecCCCEEEEEECCCeEEEEECCCCeE---EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCce
Q 008393 415 TAQM-RFQPHLGRYLAAAAENVVSILDAETQAC---RLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGEC 490 (567)
Q Consensus 415 ~~~~-~~~~~~~~l~~~~~dg~I~i~d~~~~~~---~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~ 490 (567)
..++ .+.-.+++..++..+..+.+.|+.+... ...+......-..+..+ +.++..+..++..+.+.... ..
T Consensus 257 p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~---s~ 331 (370)
T COG5276 257 PVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPP---SM 331 (370)
T ss_pred cccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEeccCCceEEEeCCCh---hh
Confidence 1111 2334455666666666666666654311 11111111122223322 44455554444455555332 11
Q ss_pred EEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEEC
Q 008393 491 VHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNM 527 (567)
Q Consensus 491 i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~ 527 (567)
.....+....+.++..+-+.+.+.....++.+.||+.
T Consensus 332 m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 332 MDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred cccccCcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1112222223445555556667788888888888875
No 438
>PHA02790 Kelch-like protein; Provisional
Probab=94.75 E-value=1.2 Score=47.50 Aligned_cols=177 Identities=7% Similarity=-0.039 Sum_probs=84.6
Q ss_pred CCCeEEEEeCCC-----cEEEEeCCCCeeee--eecccCccEEEEEECCCCCeEEEEeCC--CcEEEEEcCCCCceeEEe
Q 008393 298 DGKLLATGGHDK-----KAVLWHTDTLKSKT--NLEEHSSLITDVRFSPSMPRLATSSFD--KTVRVWDADNPGYSLRTF 368 (567)
Q Consensus 298 dg~~lasg~~dg-----~I~vwd~~~~~~~~--~l~~h~~~V~~i~fsp~~~~l~s~s~d--g~I~iwd~~~~~~~~~~~ 368 (567)
++.++++||.++ .+..||..+.+... .+.........+. -++...+.|+.+ ..+..||..++.. ...
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence 455667777543 46678877654332 2221111122222 356677777754 3578888765322 222
Q ss_pred ccCCCcEE--EEEEcCCCCeEEEEEeCCC---cEEEEECCCCeeeEEEeC--CeeEEEEecCCCEEEEEECCCeEEEEEC
Q 008393 369 MGHSASVM--SLDFHPNKDDLICSCDGDG---EIRYWSINNGSCTRVFKG--GTAQMRFQPHLGRYLAAAAENVVSILDA 441 (567)
Q Consensus 369 ~~h~~~V~--~l~~~p~~~~li~s~~~dg---~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~I~i~d~ 441 (567)
..-..+.. +++.. ++.+++.|+.++ .+..||.++.+....-.- +....+...-++.+++.+ |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G--G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG--RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC--CceEEecC
Confidence 11111111 22222 355777777553 467888877655432111 111111112235555544 45778888
Q ss_pred CCCeEE--EEecCCCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCC
Q 008393 442 ETQACR--LSLQGHTKPIDSVCWDPSGELLASVSED------SVRVWTVGS 484 (567)
Q Consensus 442 ~~~~~~--~~~~~h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~ 484 (567)
++.+-. ..+....... +++. -+|++.+.|+.+ .|.+||..+
T Consensus 423 ~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 423 SSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCC
Confidence 775433 2222111122 2222 356677776642 355666544
No 439
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.73 E-value=0.11 Score=35.27 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.3
Q ss_pred CccEEEEEECCCCCeEEEEeCCCcEEEEEcC
Q 008393 329 SSLITDVRFSPSMPRLATSSFDKTVRVWDAD 359 (567)
Q Consensus 329 ~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~ 359 (567)
...|.++.|+|...+||.+..+|.|.+|.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3469999999999999999999999999994
No 440
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=94.67 E-value=6.1 Score=40.68 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=66.2
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCc--eEEEeec--CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 454 TKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGE--CVHELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~--~i~~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
...+..+.|.+++.+++++..+.+ +|....+.... .+..... ....+..+.|.+++. +++++..|.+.... ..
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~ 356 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DG 356 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CC
Confidence 456889999999998887755543 33333332111 2232222 224588888987776 66666777666654 45
Q ss_pred CcEEEe----ccccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 530 NKTMTL----TAHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 530 ~~~~~~----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
++.... ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus 357 G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 357 GKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred CcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 554322 233456889998777665554 568877655
No 441
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.54 E-value=1.2 Score=48.01 Aligned_cols=109 Identities=12% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCceEEEEE--eCCCCeEEEEEcCCeEEEEECC---
Q 008393 455 KPIDSVCWDPSGELLASVSED-SVRVWTVGSGSEGECVHELSCNGNKFHSCVF--HPTYPSLLVIGCYQSLELWNMS--- 528 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~--sp~~~~l~~~~~dg~I~iwd~~--- 528 (567)
....-+.-+.-++..++-+.. .+.|||.+.+. .+.-..+ ...+.|..+.| .|++..+++.|....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~-lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV-LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE-EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 344455555556655555555 89999998663 1112222 44677888877 4689999999999999998532
Q ss_pred --CC-------cEEEecccc-CCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 529 --EN-------KTMTLTAHE-GLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 529 --~~-------~~~~~~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.. +.+.+..|+ .+|.+..|.++|.+++.+|. .+.|++
T Consensus 108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN--qlfv~d 154 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN--QLFVFD 154 (631)
T ss_pred hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC--EEEEEC
Confidence 11 122344555 68999999999977665543 455553
No 442
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.52 E-value=5.3 Score=39.34 Aligned_cols=266 Identities=12% Similarity=0.129 Sum_probs=118.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCeeeeeec--cc---CccEEEEEECCCCCeEEEEeCCCcEEEEEcCC
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTD-TLKSKTNLE--EH---SSLITDVRFSPSMPRLATSSFDKTVRVWDADN 360 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~-~~~~~~~l~--~h---~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~ 360 (567)
...+.+|+|..+..-+|+|. .+.| +... -|+.-.... .. .....+|.|..+ ..++ ++..+ +.+...+.
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~i-vG~~g-~ll~T~Dg 89 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWI-VGEPG-LLLHTTDG 89 (302)
T ss_dssp SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEE-EEETT-EEEEESST
T ss_pred CCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEE-EcCCc-eEEEecCC
Confidence 45888999996666666664 4543 3232 222211111 11 223667777643 3344 44455 43444443
Q ss_pred CCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCee-eEEEe---CCeeEEEEecCCCEEEEEECC
Q 008393 361 PGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSC-TRVFK---GGTAQMRFQPHLGRYLAAAAE 433 (567)
Q Consensus 361 ~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~-~~~~~---~~~~~~~~~~~~~~l~~~~~d 433 (567)
+.....+. .-.+....+....++ ..++. +..|.|+. ..+.++. ..... +.+..+...+++.+++++...
T Consensus 90 -G~tW~~v~l~~~lpgs~~~i~~l~~~-~~~l~-~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G 165 (302)
T PF14870_consen 90 -GKTWERVPLSSKLPGSPFGITALGDG-SAELA-GDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG 165 (302)
T ss_dssp -TSS-EE----TT-SS-EEEEEEEETT-EEEEE-ETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS
T ss_pred -CCCcEEeecCCCCCCCeeEEEEcCCC-cEEEE-cCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc
Confidence 44433322 123344444444443 33323 33444332 2222222 22222 344556667776655555555
Q ss_pred CeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCC-CCC-CceEEEeecCCCceEEEEEeCCC
Q 008393 434 NVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED-SVRVWTVGS-GSE-GECVHELSCNGNKFHSCVFHPTY 510 (567)
Q Consensus 434 g~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~-~~~-~~~i~~~~~~~~~i~~~~~sp~~ 510 (567)
..+.-||.-...-...-......|.+|.|.+++.+.+.+ .+ .|++=+... ... .+.+..+......+..++|.+++
T Consensus 166 ~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 166 NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 556677765432222222345789999999998877755 55 777776211 100 01111122234458899999887
Q ss_pred CeEEEEEcCCeEEEEECCCCcEEEec----cccCCeeEEEEecCCCEEEEEECCCcEEEc
Q 008393 511 PSLLVIGCYQSLELWNMSENKTMTLT----AHEGLIAALAVSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 511 ~~l~~~~~dg~I~iwd~~~~~~~~~~----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 566 (567)
. +.+++..|.| +.....++.-... .-...++.+.|..+.+-+| .+.||.|.-|
T Consensus 245 ~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 245 E-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp --EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred C-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 6 4445555544 3445556544222 3345688888876544444 5678887655
No 443
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=94.32 E-value=2 Score=36.28 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=77.6
Q ss_pred EEEECCCCCeEEEEeCCCcEEEEEcCCCC-------ceeEEeccCCCcEEEEEEcC----CCCeEEEEEeCCCcEEEEEC
Q 008393 334 DVRFSPSMPRLATSSFDKTVRVWDADNPG-------YSLRTFMGHSASVMSLDFHP----NKDDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 334 ~i~fsp~~~~l~s~s~dg~I~iwd~~~~~-------~~~~~~~~h~~~V~~l~~~p----~~~~li~s~~~dg~I~iwd~ 402 (567)
.-+|......|+.++.-|+|.|++..... ..+..+ .....|++|+-.+ ++..+|+.|+ ...|..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566667789999999999999876422 122333 3556788876543 2345665665 678999999
Q ss_pred CCCeee--EEEeCCeeEEEEe---cCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 403 NNGSCT--RVFKGGTAQMRFQ---PHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 403 ~~~~~~--~~~~~~~~~~~~~---~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
....-+ +.+..++.++.+- .....++..+.+..|.-||.+..+..++..
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 887644 4456677776653 334567777778888888887777666544
No 444
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.27 E-value=1.6 Score=44.83 Aligned_cols=140 Identities=11% Similarity=0.122 Sum_probs=93.4
Q ss_pred CCCeEE-EEeCCCcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCC-------eEEEEEeCCCcEEEEECCC-CeeeE-
Q 008393 340 SMPRLA-TSSFDKTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKD-------DLICSCDGDGEIRYWSINN-GSCTR- 409 (567)
Q Consensus 340 ~~~~l~-s~s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~-------~li~s~~~dg~I~iwd~~~-~~~~~- 409 (567)
+..+|+ .|+....++-.|++. ++.+..+.-|... -+.|.|..+ .-+ .|-.+..|.-.|.+- +..+.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CcceEEecCCCcccceeeeccc-ceeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceee
Confidence 444443 445556677778876 7777777766654 456666421 223 455566776667653 22222
Q ss_pred -EEeCCeeEEEE----ecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 410 -VFKGGTAQMRF----QPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 410 -~~~~~~~~~~~----~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
.++...+.-.| ....+++++++..|.|++||--..+....+.+-...|..|..+.+|++|++.+...+.+.|++
T Consensus 554 ~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 554 VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 22222222222 334689999999999999997666555566777788999999999999999999888888886
No 445
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.20 E-value=7.9 Score=40.00 Aligned_cols=222 Identities=10% Similarity=0.138 Sum_probs=120.1
Q ss_pred CCeEEEEeCCCcEEEEEcCCCCce---eEEeccCCCcEEEEEEc---CC-CCeEEEEEeCCCcEEEEECCCC--e-----
Q 008393 341 MPRLATSSFDKTVRVWDADNPGYS---LRTFMGHSASVMSLDFH---PN-KDDLICSCDGDGEIRYWSINNG--S----- 406 (567)
Q Consensus 341 ~~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~~---p~-~~~li~s~~~dg~I~iwd~~~~--~----- 406 (567)
...|++|+..|.++||+....+.. +..-..-..+|..|..- +. ....+ +.-.-..+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~L-aVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQL-AVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceE-EEecCCEEEEEEEEecCCCcccCc
Confidence 458999999999999998653321 12222345677777653 22 22233 3344667777776321 1
Q ss_pred ---eeEEE----eCCeeEEEEecC-----CCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeC
Q 008393 407 ---CTRVF----KGGTAQMRFQPH-----LGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSE 474 (567)
Q Consensus 407 ---~~~~~----~~~~~~~~~~~~-----~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~ 474 (567)
....+ ......+++-+- ...+++-+.||.+.+|+-+.......+.+ ---...++|.+.-..|++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 11111 122223333222 25677788899999999888765555554 122234678888888888888
Q ss_pred C-eEEEEeCCCC--------------------CCCceEEEeecCCCceEEEE---EeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 475 D-SVRVWTVGSG--------------------SEGECVHELSCNGNKFHSCV---FHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 475 d-~I~iwd~~~~--------------------~~~~~i~~~~~~~~~i~~~~---~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
+ .|..|....- +....-.++.. +..+..+. ++.....|++-+. ..+++.+.. |
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLge-r~Lf~l~~~-G 271 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNL-GEQALDIQVVRFSSSESDIVVLGE-RSLFCLKDN-G 271 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEEC-CceeEEEEEEEcCCCCceEEEEec-ceEEEEcCC-C
Confidence 8 8888876321 11112222222 22333332 3333344444443 466666664 3
Q ss_pred cEEEeccccCCeeEEE-E----ecCC---CEEEEEECCCcEEEcC
Q 008393 531 KTMTLTAHEGLIAALA-V----STET---GYVASASHDKFVKLWK 567 (567)
Q Consensus 531 ~~~~~~~h~~~V~~l~-~----spdg---~~l~s~s~Dg~I~iWd 567 (567)
........+....|++ | ..++ ..++.+++++.+.||+
T Consensus 272 ~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 272 SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 4432222233222222 2 1122 2478888999998874
No 446
>PLN02193 nitrile-specifier protein
Probab=94.18 E-value=7.2 Score=41.38 Aligned_cols=149 Identities=6% Similarity=-0.075 Sum_probs=72.5
Q ss_pred CCeEEEEEeCC-----CcEEEEECCCCeeeEEEeC-----CeeE-EEEecCCCEEEEEECC-----CeEEEEECCCCeEE
Q 008393 384 KDDLICSCDGD-----GEIRYWSINNGSCTRVFKG-----GTAQ-MRFQPHLGRYLAAAAE-----NVVSILDAETQACR 447 (567)
Q Consensus 384 ~~~li~s~~~d-----g~I~iwd~~~~~~~~~~~~-----~~~~-~~~~~~~~~l~~~~~d-----g~I~i~d~~~~~~~ 447 (567)
++.+++.|+.+ ..+.+||+.+.+....-.. .... ....-.+..++.++.+ ..+..||+.+.+-.
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 35577677654 4688899988765443211 1111 1112233444455443 35778888776433
Q ss_pred EEec-----CCCCCeeEEEEcCCCCEEEEEeC-----CeEEEEeCCCCCCCceEEEeec-CCCceEEEEEeCCCCeEEEE
Q 008393 448 LSLQ-----GHTKPIDSVCWDPSGELLASVSE-----DSVRVWTVGSGSEGECVHELSC-NGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 448 ~~~~-----~h~~~V~~l~~sp~g~~l~s~s~-----d~I~iwd~~~~~~~~~i~~~~~-~~~~i~~~~~sp~~~~l~~~ 516 (567)
..-. ..... ..++. -++++++.++. +.|.+||+.+.. ...+..... ........+..-+++.++.|
T Consensus 308 ~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~~~~~iyv~G 384 (470)
T PLN02193 308 HCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAAVGKHIVIFG 384 (470)
T ss_pred eCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEEECCEEEEEC
Confidence 2110 00111 12222 25666666653 258899987641 122211100 01111111223355666666
Q ss_pred EcC--------------CeEEEEECCCCcEEEe
Q 008393 517 GCY--------------QSLELWNMSENKTMTL 535 (567)
Q Consensus 517 ~~d--------------g~I~iwd~~~~~~~~~ 535 (567)
+.. +.+++||+.+.+...+
T Consensus 385 G~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 385 GEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 642 2588999988876544
No 447
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.17 E-value=7.2 Score=39.43 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=23.2
Q ss_pred eEEEEECCCCcEEEeccccCCee-EEEEecCCCEEEEEECCC
Q 008393 521 SLELWNMSENKTMTLTAHEGLIA-ALAVSTETGYVASASHDK 561 (567)
Q Consensus 521 ~I~iwd~~~~~~~~~~~h~~~V~-~l~~spdg~~l~s~s~Dg 561 (567)
.+.+||..+.+...+........ ..+..-++++++.|+.+.
T Consensus 291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence 57889988776543332222211 223345778888888653
No 448
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.09 E-value=4.1 Score=42.69 Aligned_cols=267 Identities=15% Similarity=0.071 Sum_probs=128.1
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccC-ccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCcee
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHS-SLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~-~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
..+|..+.++-.|.+ .+|+.|| +..||..+++.+..-.... ..|..+.-+-.+ .|.+|+.+| |++.+.+.....-
T Consensus 164 d~~V~aLv~D~~g~l-WvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn 239 (671)
T COG3292 164 DTPVVALVFDANGRL-WVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN 239 (671)
T ss_pred CccceeeeeeccCcE-EEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence 467888888888854 4565555 5667777777666544333 556655554444 678888888 7887776411111
Q ss_pred EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeE-EEeC--CeeE-EE-EecCCCEEEEEECCCeEEEEE
Q 008393 366 RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTR-VFKG--GTAQ-MR-FQPHLGRYLAAAAENVVSILD 440 (567)
Q Consensus 366 ~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~-~~~~--~~~~-~~-~~~~~~~l~~~~~dg~I~i~d 440 (567)
....-..+.|..+.-...|...| |++.|..+. ......... ..+. +.+. .. +....+.+-+++.++.+.+-+
T Consensus 240 ~~~~lp~~~I~ll~qD~qG~lWi--GTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~ 316 (671)
T COG3292 240 WGPMLPSGNILLLVQDAQGELWI--GTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLT 316 (671)
T ss_pred cCCCCcchheeeeecccCCCEEE--eecccceeE-ecCCCCccccccccCCccccccceeeccCCCEeeeccCceEEEec
Confidence 11112334555555555555443 554544332 333222211 1111 1111 11 222335566666666666544
Q ss_pred CCCCeEEEEecCCCCC-eeEEEEcC---CCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEE
Q 008393 441 AETQACRLSLQGHTKP-IDSVCWDP---SGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVI 516 (567)
Q Consensus 441 ~~~~~~~~~~~~h~~~-V~~l~~sp---~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~ 516 (567)
.. ......+....+. +-.++..| +......-+.+.+.+-+-.++.....++.. .+..|+.+++..++ .+..+
T Consensus 317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~--Rg~nit~~~~d~~g-~lWlg 392 (671)
T COG3292 317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQL--RGMNITTTLEDSRG-RLWLG 392 (671)
T ss_pred ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeec--cccccchhhhccCC-cEEEE
Confidence 32 1111111111111 11111111 000000001111222222222111112222 23445556666644 47778
Q ss_pred EcCCeEEEEECCC-CcEEEec--cccCCeeEEEEecCCCEEEEEECCCcEEE
Q 008393 517 GCYQSLELWNMSE-NKTMTLT--AHEGLIAALAVSTETGYVASASHDKFVKL 565 (567)
Q Consensus 517 ~~dg~I~iwd~~~-~~~~~~~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 565 (567)
+..+.+..|+.++ +..+... ...++|.++.=.|+++ |..|+.+|.++.
T Consensus 393 s~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 393 SMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred ecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence 7776777777776 3333222 2446788888888888 667888887653
No 449
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=94.03 E-value=8.2 Score=39.56 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=102.8
Q ss_pred CCCeEEEEe-CCCcEEEEEcCCCCc---eeEEecc---CC----CcEEEEEEcCCCCeEEEEE--eC----CCcEEEEEC
Q 008393 340 SMPRLATSS-FDKTVRVWDADNPGY---SLRTFMG---HS----ASVMSLDFHPNKDDLICSC--DG----DGEIRYWSI 402 (567)
Q Consensus 340 ~~~~l~s~s-~dg~I~iwd~~~~~~---~~~~~~~---h~----~~V~~l~~~p~~~~li~s~--~~----dg~I~iwd~ 402 (567)
+.++|+..+ ..+.|+|.|+.+... ..+++.. +. .....+...|+|+-+| ++ +. -|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imI-S~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMI-SALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEE-EEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEE-EeccCCCCCCCCcEEEEcC
Confidence 345777776 678899999985322 2233321 10 1223344456665444 43 22 356888888
Q ss_pred CCCeeeEEEeCC------eeEEEEecCCCEEEEEEC--------------------CCeEEEEECCCCeEEEEecCCCC-
Q 008393 403 NNGSCTRVFKGG------TAQMRFQPHLGRYLAAAA--------------------ENVVSILDAETQACRLSLQGHTK- 455 (567)
Q Consensus 403 ~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~--------------------dg~I~i~d~~~~~~~~~~~~h~~- 455 (567)
++.+.....+.. ...+-+.|..+.+++... ...+.+||+.+.+.+.++.--..
T Consensus 165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g 244 (461)
T PF05694_consen 165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG 244 (461)
T ss_dssp TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence 887777666542 234667887777777542 35899999999999988875432
Q ss_pred -CeeEEEEcC--CCCEEEEEeC-C-eEEEEeCCCCCCC--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 008393 456 -PIDSVCWDP--SGELLASVSE-D-SVRVWTVGSGSEG--ECVHELSCN-----------------GNKFHSCVFHPTYP 511 (567)
Q Consensus 456 -~V~~l~~sp--~g~~l~s~s~-d-~I~iwd~~~~~~~--~~i~~~~~~-----------------~~~i~~~~~sp~~~ 511 (567)
....|.|.. +..+-++++. . .|..|--...... +.+..+... ..-++.+.+|.|++
T Consensus 245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr 324 (461)
T PF05694_consen 245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR 324 (461)
T ss_dssp EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence 344566654 4444444433 3 5555443222111 112222111 23478899999999
Q ss_pred eEEEEEc-CCeEEEEECCCCcEEEec-----c---------------ccCCeeEEEEecCCCEEEEEE
Q 008393 512 SLLVIGC-YQSLELWNMSENKTMTLT-----A---------------HEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 512 ~l~~~~~-dg~I~iwd~~~~~~~~~~-----~---------------h~~~V~~l~~spdg~~l~s~s 558 (567)
+|++.+. .|.|+.||+.....-.+. + -.+....|..|-||+.|....
T Consensus 325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 9998876 589999999875422111 1 112346788899998876543
No 450
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.87 E-value=4.6 Score=44.88 Aligned_cols=80 Identities=25% Similarity=0.274 Sum_probs=56.0
Q ss_pred CCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCC---------CCeee---eee--------cccCccEEEEEECCC---CC
Q 008393 286 STSKVICCHFSSDGKLLATGGHDKKAVLWHTD---------TLKSK---TNL--------EEHSSLITDVRFSPS---MP 342 (567)
Q Consensus 286 h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~---------~~~~~---~~l--------~~h~~~V~~i~fsp~---~~ 342 (567)
-.-.|..|.++++|++||..|..|.+.+.=-. .++.. +++ ..+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34578889999999999999887655443211 11111 111 134567999999996 57
Q ss_pred eEEEEeCCCcEEEEEcCCCCcee
Q 008393 343 RLATSSFDKTVRVWDADNPGYSL 365 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~ 365 (567)
.|++-..|+++|+||+.....+.
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCe
Confidence 99999999999999997644433
No 451
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=93.83 E-value=16 Score=42.27 Aligned_cols=22 Identities=27% Similarity=0.182 Sum_probs=17.0
Q ss_pred ccccCCeeEEEEecCCCEEEEE
Q 008393 536 TAHEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 536 ~~h~~~V~~l~~spdg~~l~s~ 557 (567)
.+|-..+.++|.+|||..++.-
T Consensus 658 ~A~lnsp~alaVsPdg~v~IAD 679 (1899)
T KOG4659|consen 658 QAKLNSPYALAVSPDGDVIIAD 679 (1899)
T ss_pred ccccCCcceEEECCCCcEEEec
Confidence 4566788999999999876653
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.75 E-value=1 Score=45.60 Aligned_cols=104 Identities=12% Similarity=0.134 Sum_probs=70.6
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCC-eEEEEeCCCCC-CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECC--
Q 008393 453 HTKPIDSVCWDPSGELLASVSED-SVRVWTVGSGS-EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMS-- 528 (567)
Q Consensus 453 h~~~V~~l~~sp~g~~l~s~s~d-~I~iwd~~~~~-~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~-- 528 (567)
..++|.+|.|++|.+.||.--.+ .|.+++.-..+ ......+.+.....|...+|+.... ++.....| +.+|-..
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e-~A~i~~~G-~e~y~v~pe 142 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE-IAFITDQG-IEFYQVLPE 142 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee-EEEEecCC-eEEEEEchh
Confidence 45799999999999999999888 99999884321 1122333444455688889987743 55555444 5555443
Q ss_pred CCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 529 ENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 529 ~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
.........|...|+-..|.++.+.+.-++
T Consensus 143 krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 143 KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 333345667888899999999887654443
No 453
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.73 E-value=3.8 Score=37.70 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=38.7
Q ss_pred CEEEEEECCCeEEEEECCC--CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 425 GRYLAAAAENVVSILDAET--QACRLSLQGHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~--~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
+.++++.....|.+|++.. .+.+..|.. -+.|..+.++..|+||++--.+
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence 5666667888999999883 355666664 3789999999999999987543
No 454
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.71 E-value=9.4 Score=39.16 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.2
Q ss_pred cEEEEECCCCeeeE
Q 008393 396 EIRYWSINNGSCTR 409 (567)
Q Consensus 396 ~I~iwd~~~~~~~~ 409 (567)
.|.+||..+.+...
T Consensus 190 ~v~~YD~~t~~W~~ 203 (376)
T PRK14131 190 EVLSYDPSTNQWKN 203 (376)
T ss_pred eEEEEECCCCeeeE
Confidence 58889988776543
No 455
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=93.64 E-value=8.2 Score=39.60 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=20.3
Q ss_pred EEEEECCCCcEEEeccccCC-eeEEEEecCCCEEEEEECC
Q 008393 522 LELWNMSENKTMTLTAHEGL-IAALAVSTETGYVASASHD 560 (567)
Q Consensus 522 I~iwd~~~~~~~~~~~h~~~-V~~l~~spdg~~l~s~s~D 560 (567)
+.+||..+.+...+..-..+ -...+..-++++++.||..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence 56889887765432211111 1112333467788888753
No 456
>PHA02790 Kelch-like protein; Provisional
Probab=93.45 E-value=3.8 Score=43.58 Aligned_cols=168 Identities=7% Similarity=-0.065 Sum_probs=79.7
Q ss_pred CeEEEEEeCCC-----cEEEEECCCCeeeEEEe--CCee-EEEEecCCCEEEEEECC--CeEEEEECCCCeEEEEecCCC
Q 008393 385 DDLICSCDGDG-----EIRYWSINNGSCTRVFK--GGTA-QMRFQPHLGRYLAAAAE--NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 385 ~~li~s~~~dg-----~I~iwd~~~~~~~~~~~--~~~~-~~~~~~~~~~l~~~~~d--g~I~i~d~~~~~~~~~~~~h~ 454 (567)
+.+++.|+.++ .+..||..+++....-. .... .....-++..+++|+.+ ..+..||..+.+-...-.-..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~ 351 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLK 351 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCC
Confidence 45666776543 57778888766443221 1111 11122333444555543 468889887654322111111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCC
Q 008393 455 KPIDSVCWDPSGELLASVSED----SVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSEN 530 (567)
Q Consensus 455 ~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~ 530 (567)
.........-+|++.+.|+.+ .+..||.++. ....+..+...... ..+..-++. |++.| |.+.+||..++
T Consensus 352 ~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~--~~~~~~~~~-IYv~G--G~~e~ydp~~~ 425 (480)
T PHA02790 352 PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYK--SCALVFGRR-LFLVG--RNAEFYCESSN 425 (480)
T ss_pred CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC-EEEeCCCCCCcccc--ceEEEECCE-EEEEC--CceEEecCCCC
Confidence 111111122367777777643 4778887653 11111111111111 122233444 44444 45788999887
Q ss_pred cEEEeccc---cCCeeEEEEecCCCEEEEEECC
Q 008393 531 KTMTLTAH---EGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 531 ~~~~~~~h---~~~V~~l~~spdg~~l~s~s~D 560 (567)
+...+... .... +++ .-++++.+.||.+
T Consensus 426 ~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~ 456 (480)
T PHA02790 426 TWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFY 456 (480)
T ss_pred cEeEcCCCCCCcccc-EEE-EECCEEEEECCcC
Confidence 76543321 1122 222 2367788888765
No 457
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.40 E-value=2 Score=46.51 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=79.5
Q ss_pred eeeeeccCCCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeec-ccCccEEEEEEC--CCCCeEEEEeCCCcEEE
Q 008393 279 EANSVRASTSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLE-EHSSLITDVRFS--PSMPRLATSSFDKTVRV 355 (567)
Q Consensus 279 ~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~-~h~~~V~~i~fs--p~~~~l~s~s~dg~I~i 355 (567)
...++...-....-+.-|.-++..++-.....+.|||...+.....-. ...+.|.++.|. |++..+++.+....|.+
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 334444444555556666656665665566789999999887554433 457789999995 68889999999999999
Q ss_pred EEcC-----CCC---ceeEE--eccCC-CcEEEEEEcCCCCeEEEEEeCCCcEEEEECC
Q 008393 356 WDAD-----NPG---YSLRT--FMGHS-ASVMSLDFHPNKDDLICSCDGDGEIRYWSIN 403 (567)
Q Consensus 356 wd~~-----~~~---~~~~~--~~~h~-~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~ 403 (567)
|.-. +.. ..++. +..|+ .+|.+..|.++|. ++ +|+ ++.+.|+|-.
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-Lv-V~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LV-VGS-GNQLFVFDKW 156 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EE-EEe-CCEEEEECCC
Confidence 8542 111 12222 22344 6789999999875 33 232 5678888743
No 458
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.40 E-value=10 Score=38.71 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=98.6
Q ss_pred eEEEEeCCCcEEEEEcCCCCceeEEeccC-CCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCee-EE--
Q 008393 343 RLATSSFDKTVRVWDADNPGYSLRTFMGH-SASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGTA-QM-- 418 (567)
Q Consensus 343 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~~-~~-- 418 (567)
.++.+..+|.|.-.|.++........... ...+.+-.+..+|. ++.++.++.++.+|.++++.+..+..... ..
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~ 147 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS 147 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence 56666788888888887733221111111 12233333333554 44788899999999999998888776551 11
Q ss_pred EEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCC---CeeEEEEcCCCCEEEEEeC--C-eEEEEeCCCCCCCceEE
Q 008393 419 RFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTK---PIDSVCWDPSGELLASVSE--D-SVRVWTVGSGSEGECVH 492 (567)
Q Consensus 419 ~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~---~V~~l~~sp~g~~l~s~s~--d-~I~iwd~~~~~~~~~i~ 492 (567)
........++..+.++.+...|..+++.+........ .+..--...++ .++.+.. + .+.-+|..++...-...
T Consensus 148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~ 226 (370)
T COG1520 148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQK 226 (370)
T ss_pred CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeee
Confidence 1222335555555789999999999988777543221 11111111233 3334444 4 56666665552211110
Q ss_pred E-eecCCC------ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 493 E-LSCNGN------KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 493 ~-~~~~~~------~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
. ...... .+..-.+.-++ .++.++.++.+...|..+++.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~ 273 (370)
T COG1520 227 VSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI 273 (370)
T ss_pred eecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence 0 000000 01100111122 2466677778888888888876
No 459
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.34 E-value=0.092 Score=56.98 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCccEEEEE-----------ECCCCCeEEEEeCCCcEEEEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSSLITDVR-----------FSPSMPRLATSSFDKTVRVWD 357 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~-----------fsp~~~~l~s~s~dg~I~iwd 357 (567)
.|.-+-|-++.-++..+-.++.|++..+++... ..+.+|...+..++ .+|||+.|+.++.||.++.|-
T Consensus 185 ~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 185 LVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred eeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 344444555667788888889999887765433 45556877766655 489999999999999999887
Q ss_pred cCCCC----ceeEEeccCC-CcEEEEEEcCCC---------CeEEEEEeCCCcEEEEECCCCeeeE
Q 008393 358 ADNPG----YSLRTFMGHS-ASVMSLDFHPNK---------DDLICSCDGDGEIRYWSINNGSCTR 409 (567)
Q Consensus 358 ~~~~~----~~~~~~~~h~-~~V~~l~~~p~~---------~~li~s~~~dg~I~iwd~~~~~~~~ 409 (567)
+.-.+ .++...+.|. .+-.|.-|+... ..+|-+...+..+++|.....+|+.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cll 329 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCLL 329 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhhh
Confidence 65322 2344555565 222222233221 1233344456789999988877773
No 460
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.33 E-value=0.0075 Score=60.81 Aligned_cols=140 Identities=20% Similarity=0.314 Sum_probs=94.9
Q ss_pred EEEEecCCCEEEEEECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC--eEEEEeCCCCCCCceEEEe
Q 008393 417 QMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED--SVRVWTVGSGSEGECVHEL 494 (567)
Q Consensus 417 ~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d--~I~iwd~~~~~~~~~i~~~ 494 (567)
...|.+.+..+++++.+..+..||-...... ... ..+....++|+.+|..++...+. .+.+||+.+....+ +..
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqq-LE~- 114 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-ELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LES- 114 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec-ccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH-Hhc-
Confidence 3456666777888888888888886544322 221 23455678999888866665544 89999997642111 111
Q ss_pred ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEecc-ccCCeeEEEEecCCCEEEEEECCCc
Q 008393 495 SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLTA-HEGLIAALAVSTETGYVASASHDKF 562 (567)
Q Consensus 495 ~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~~-h~~~V~~l~~spdg~~l~s~s~Dg~ 562 (567)
.+ ...-.-+.|++.+..++.+...|.+.||+..+.+.....+ |...+++++|.+.+ +.+.++.|..
T Consensus 115 gg-~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~ 181 (615)
T KOG2247|consen 115 GG-TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNT 181 (615)
T ss_pred cC-cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHH
Confidence 11 1111115789999999999889999999999887775555 99999999998876 4555665543
No 461
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=5.3 Score=36.44 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=88.4
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEE-EeCCCcEEEEEcCCCCceeEEeccCCCc
Q 008393 298 DGKLLATGGH--DKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLAT-SSFDKTVRVWDADNPGYSLRTFMGHSAS 374 (567)
Q Consensus 298 dg~~lasg~~--dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s-~s~dg~I~iwd~~~~~~~~~~~~~h~~~ 374 (567)
+|.++.+.+. ...|++||+.+++.+..-.-....+..=-...-+.++.. .-.+|...++|.++ -+++..+. ..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-~~~lg~~~-y~Ge 132 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-LEELGRFS-YEGE 132 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-hhhhcccc-cCCc
Confidence 3456665553 457999999999887665422111111111111233332 23477788888876 33343333 2334
Q ss_pred EEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEe----C-C---eeEEEEecCCCEEEE-EECCCeEEEEECCCCe
Q 008393 375 VMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFK----G-G---TAQMRFQPHLGRYLA-AAAENVVSILDAETQA 445 (567)
Q Consensus 375 V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~----~-~---~~~~~~~~~~~~l~~-~~~dg~I~i~d~~~~~ 445 (567)
=+.++. ++..++ .++...+++.-|.++-....... + + .+.+.|. .+.+++ .-....|...|..+|+
T Consensus 133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V--dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV--DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee--ccEEEEeeeeecceEEEcCCCCc
Confidence 455544 455666 44445567777766544332221 1 1 1111221 133333 3335566666777776
Q ss_pred EEEEec------------CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 446 CRLSLQ------------GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 446 ~~~~~~------------~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.+..+. .|..-.+.|++.|++..|+..+..
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~ 249 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKL 249 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCc
Confidence 655442 244567889999988555554443
No 462
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.04 E-value=8.5 Score=38.46 Aligned_cols=107 Identities=9% Similarity=0.087 Sum_probs=52.3
Q ss_pred CCCeEEEEeCC-----CcEEEEeCCCCeee---eeec---ccCccEEEEEECCCCCeEEEEeC-----CCcEEEEEcCCC
Q 008393 298 DGKLLATGGHD-----KKAVLWHTDTLKSK---TNLE---EHSSLITDVRFSPSMPRLATSSF-----DKTVRVWDADNP 361 (567)
Q Consensus 298 dg~~lasg~~d-----g~I~vwd~~~~~~~---~~l~---~h~~~V~~i~fsp~~~~l~s~s~-----dg~I~iwd~~~~ 361 (567)
++.+++.|+.+ ..+..||+.+.+.. ..+. ...... +++. -++++.+.|+. ...+.+||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~-~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG-SACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc-eEEE-ECCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 56677777754 35667777665431 1221 111111 1222 24556666664 235788888764
Q ss_pred CceeE-EeccCCCcEEEEEEcCCCCeEEEEEeCCC----cEEEEECCCCeee
Q 008393 362 GYSLR-TFMGHSASVMSLDFHPNKDDLICSCDGDG----EIRYWSINNGSCT 408 (567)
Q Consensus 362 ~~~~~-~~~~h~~~V~~l~~~p~~~~li~s~~~dg----~I~iwd~~~~~~~ 408 (567)
..... .+... ......+..- ++.+++.|+.++ .+.+||+.+.+..
T Consensus 150 ~W~~~~~~p~~-~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 150 EWFELPDFPGE-PRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CeeECCCCCCC-CCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 43221 11111 1111111122 245776777654 3568888877654
No 463
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.84 E-value=3.6 Score=34.77 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=61.1
Q ss_pred CCCEEEEEECCCeEEEEECCCCe--------EEEEecCCCCCeeEEEEcC-----CCCEEEEEeCCeEEEEeCCCCCCCc
Q 008393 423 HLGRYLAAAAENVVSILDAETQA--------CRLSLQGHTKPIDSVCWDP-----SGELLASVSEDSVRVWTVGSGSEGE 489 (567)
Q Consensus 423 ~~~~l~~~~~dg~I~i~d~~~~~--------~~~~~~~h~~~V~~l~~sp-----~g~~l~s~s~d~I~iwd~~~~~~~~ 489 (567)
....|++++..+.|.|++..... .+..+. -...|++|+-.+ +...|+.|+...|..||+..... .
T Consensus 9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-~ 86 (136)
T PF14781_consen 9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-L 86 (136)
T ss_pred CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-h
Confidence 34456666666666666654321 122222 345677775433 45688888888999999976532 1
Q ss_pred eEEEeecCCCceEEEEEe---CCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 490 CVHELSCNGNKFHSCVFH---PTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 490 ~i~~~~~~~~~i~~~~~s---p~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
..++ -...+.++.+- ....-++..+.+-.|.-||....+.+
T Consensus 87 Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 87 FYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred hhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 1112 23556666553 22234666666678888887766654
No 464
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.47 E-value=0.86 Score=42.75 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=47.9
Q ss_pred EEeCCCCeEEEEEcCCeEEEEECCCCcEEE--------ec-------cccCCeeEEEEecCCCEEEEEECCCcEEEcC
Q 008393 505 VFHPTYPSLLVIGCYQSLELWNMSENKTMT--------LT-------AHEGLIAALAVSTETGYVASASHDKFVKLWK 567 (567)
Q Consensus 505 ~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~--------~~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iWd 567 (567)
.+..++.+|++.+.+|.+++||+.+++.+. +. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 456678899999999999999999987651 11 3456788999998887777665 57778775
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=1.5 Score=50.67 Aligned_cols=226 Identities=11% Similarity=0.046 Sum_probs=105.8
Q ss_pred CeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeeeeecccCc-cEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEE
Q 008393 289 KVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKTNLEEHSS-LITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRT 367 (567)
Q Consensus 289 ~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~~l~~h~~-~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~ 367 (567)
....++|++.-.++|.|...|.|++|-...-+.......-.. .+..+.|-.....+.....+..+.+|.......
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---- 112 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---- 112 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce----
Confidence 345789999999999999999999997654433332221111 122222222222333444455566666543211
Q ss_pred eccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEE----eCCeeEE-EEecCCCEEEEEECCCeEEEEECC
Q 008393 368 FMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVF----KGGTAQM-RFQPHLGRYLAAAAENVVSILDAE 442 (567)
Q Consensus 368 ~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~~dg~I~i~d~~ 442 (567)
..+...+++....+--. + +-+ ..+.+++||..-....... ....... ...+..-.+..--.+-.-.++-+.
T Consensus 113 -~~~~~~~~~~~~~~~~~-~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 188 (993)
T KOG1983|consen 113 -VFLKQEITSFVTDPPPD-W-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISLP 188 (993)
T ss_pred -eecCCcceeccCCCCcc-h-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeecc
Confidence 11223334333322211 2 345 7888888886533221110 0000000 000000000000000000000000
Q ss_pred CCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeE
Q 008393 443 TQACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSL 522 (567)
Q Consensus 443 ~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I 522 (567)
.-. ..+..+..++.+..+......+..+....+-+|+..... ..+.+... ......++..++++..||.+
T Consensus 189 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 189 DAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKY---VQSAYLPN-----GQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred ccc--ccccccccccceeeeecCCCcceeeeeeeeeehhccccc---chhhcccc-----cccCccCCceEEEEEecCCE
Confidence 000 122234455666665555555555555556666654321 11111111 11227789999999999999
Q ss_pred EEEECCCCcE
Q 008393 523 ELWNMSENKT 532 (567)
Q Consensus 523 ~iwd~~~~~~ 532 (567)
.+||...++.
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999998753
No 466
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.36 E-value=0.59 Score=30.80 Aligned_cols=31 Identities=32% Similarity=0.574 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCC---CeEEEEeCCCcEEEEeCCC
Q 008393 288 SKVICCHFSSDG---KLLATGGHDKKAVLWHTDT 318 (567)
Q Consensus 288 ~~V~~l~~s~dg---~~lasg~~dg~I~vwd~~~ 318 (567)
+.|.+|+|+|+. .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999844 5899998899999999984
No 467
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=92.36 E-value=6 Score=42.92 Aligned_cols=163 Identities=16% Similarity=0.141 Sum_probs=92.5
Q ss_pred CCCeEEEEEcCCCCeEEEEeCCCcEEEEeCCCCeeee--eec-ccCccEEEEEECC------CCCeEEEEeC-C---CcE
Q 008393 287 TSKVICCHFSSDGKLLATGGHDKKAVLWHTDTLKSKT--NLE-EHSSLITDVRFSP------SMPRLATSSF-D---KTV 353 (567)
Q Consensus 287 ~~~V~~l~~s~dg~~lasg~~dg~I~vwd~~~~~~~~--~l~-~h~~~V~~i~fsp------~~~~l~s~s~-d---g~I 353 (567)
.+.|..+.|..+++.+++.-..|.|.+||...+.... .+. .+...|.-=+|-+ ...++++.+. + -..
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y 208 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY 208 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence 6789999999999999999999999999993322221 222 1221111112222 2335554444 2 246
Q ss_pred EEEEcCCCCceeEEec---cCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCC-------eeEEEEecC
Q 008393 354 RVWDADNPGYSLRTFM---GHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGG-------TAQMRFQPH 423 (567)
Q Consensus 354 ~iwd~~~~~~~~~~~~---~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~~ 423 (567)
+++.+......+..+. .+........|+-..+.+..- .+++|.+|++...+..+.+.-. ...+.+.+-
T Consensus 209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~~~ 286 (670)
T PF10395_consen 209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLKPP 286 (670)
T ss_pred EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEeecC
Confidence 7777722222222222 222223333333333334322 6889999999888776665432 234455554
Q ss_pred CCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 424 LGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 424 ~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
...-+.-+.++.|++.|+.-...+..+.
T Consensus 287 s~nRvLLs~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 287 SPNRVLLSVNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred CCCeEEEEcCCEEEEEeehhhhhhhhhh
Confidence 4555556678899999987665554444
No 468
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=92.20 E-value=3.4 Score=42.60 Aligned_cols=136 Identities=13% Similarity=0.079 Sum_probs=86.4
Q ss_pred cCCCEEEE-EECCCeEEEEECCCCeEEEEecCCCCCeeEEEEcCCC--------CEEEEEeCCeEEEEeCCCCCCCceEE
Q 008393 422 PHLGRYLA-AAAENVVSILDAETQACRLSLQGHTKPIDSVCWDPSG--------ELLASVSEDSVRVWTVGSGSEGECVH 492 (567)
Q Consensus 422 ~~~~~l~~-~~~dg~I~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g--------~~l~s~s~d~I~iwd~~~~~~~~~i~ 492 (567)
.+...++. +.....++-.|++.|+.+..+..|... -+.|.|+. ..|+..+...|.-.|.+-......+.
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeee
Confidence 33344333 333568888899999999998887665 46777753 24554444477777766433212222
Q ss_pred Eeec--CCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-EeccccCCeeEEEEecCCCEEEEEECC
Q 008393 493 ELSC--NGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLTAHEGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 493 ~~~~--~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~~h~~~V~~l~~spdg~~l~s~s~D 560 (567)
..+. ....+.+.. .....+|++++..|.|++||--..... .+.+....|..+..+.+|++|++.+..
T Consensus 555 esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 555 ESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred eehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence 2211 122233322 334457999999999999996544333 667788889999999999988766654
No 469
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=92.02 E-value=2.4 Score=40.19 Aligned_cols=128 Identities=16% Similarity=0.207 Sum_probs=72.4
Q ss_pred EEEECCCCeEEEEecCCCCCeeEEEEcCCCCEEEEEeCC----eEEEEeCCCCCC-CceEEE--eecCCCceEEEEEeCC
Q 008393 437 SILDAETQACRLSLQGHTKPIDSVCWDPSGELLASVSED----SVRVWTVGSGSE-GECVHE--LSCNGNKFHSCVFHPT 509 (567)
Q Consensus 437 ~i~d~~~~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d----~I~iwd~~~~~~-~~~i~~--~~~~~~~i~~~~~sp~ 509 (567)
.+||+.+++.............+-.+.+||++|.+|+.. .+++++...... ...... .-.......+...-+|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 467777665432222122223334577899999998853 588888754111 111111 1123445556677789
Q ss_pred CCeEEEEEcCC-eEEEEECCC--CcEEEe--cc------ccCCeeEEEEecCCCEEEEEECCCcEE
Q 008393 510 YPSLLVIGCYQ-SLELWNMSE--NKTMTL--TA------HEGLIAALAVSTETGYVASASHDKFVK 564 (567)
Q Consensus 510 ~~~l~~~~~dg-~I~iwd~~~--~~~~~~--~~------h~~~V~~l~~spdg~~l~s~s~Dg~I~ 564 (567)
|+.|++||... +..+|.-.. .....+ .. ....---+...|+|++++.+..+..|.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~ 194 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY 194 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence 99999998876 566776532 112211 11 111222455679999999988776554
No 470
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.01 E-value=8.4 Score=41.84 Aligned_cols=175 Identities=11% Similarity=0.216 Sum_probs=88.9
Q ss_pred CcEEEEEcCCCCceeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEE------EeCCeeEEEEecCC
Q 008393 351 KTVRVWDADNPGYSLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRV------FKGGTAQMRFQPHL 424 (567)
Q Consensus 351 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~~~ 424 (567)
-.|+||++. +..+..+.-..+.+..+.|+.+ ..|| ....+|.+++|++-....... ....+....+..
T Consensus 64 ~~I~If~~s--G~lL~~~~w~~~~lI~mgWs~~-eeLI-~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~-- 137 (829)
T KOG2280|consen 64 PYIRIFNIS--GQLLGRILWKHGELIGMGWSDD-EELI-CVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFH-- 137 (829)
T ss_pred eeEEEEecc--ccchHHHHhcCCCeeeecccCC-ceEE-EEeccceEEEeecchhhhcccccccccccCceeEEEEec--
Confidence 348888886 4444443333447889999977 4466 567899999999864332221 111122222222
Q ss_pred CEEEEEECCCeEEEEECCCCeEEEEecC-CCCCeeEEEEc--CCC-C--EEEEEeCC-eEEEEeCCCCCCCceEEEeecC
Q 008393 425 GRYLAAAAENVVSILDAETQACRLSLQG-HTKPIDSVCWD--PSG-E--LLASVSED-SVRVWTVGSGSEGECVHELSCN 497 (567)
Q Consensus 425 ~~l~~~~~dg~I~i~d~~~~~~~~~~~~-h~~~V~~l~~s--p~g-~--~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~ 497 (567)
+-+++-..+|.+.+..-.....+.++.. ......+.||. +++ . .++-...- ...++-..... .....+...
T Consensus 138 ~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~--~q~~~~~~~ 215 (829)
T KOG2280|consen 138 NGVAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR--VQLHALSWP 215 (829)
T ss_pred CceEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceeccc--ccccccCCC
Confidence 3344444455554443333322333332 11111112232 221 1 11111100 11222221110 112223333
Q ss_pred CCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 498 GNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 498 ~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
...+..|.++|+.++|+.-...|.|.+-+....+++
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~l 251 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQIL 251 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhh
Confidence 466888899999999999999999999888766544
No 471
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=91.84 E-value=13 Score=37.63 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=27.4
Q ss_pred CCCCeEEEEeCC-----------CcEEEEeCCCCeeeeeecccCccEEEE-EE-CCCCCeEEEEeCC
Q 008393 297 SDGKLLATGGHD-----------KKAVLWHTDTLKSKTNLEEHSSLITDV-RF-SPSMPRLATSSFD 350 (567)
Q Consensus 297 ~dg~~lasg~~d-----------g~I~vwd~~~~~~~~~l~~h~~~V~~i-~f-sp~~~~l~s~s~d 350 (567)
-++++.+.|+.+ ..+..||..+.+-.............. +. .-++++.+.|+.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 357777888753 247778877655433211111111111 11 2367777777764
No 472
>PLN02193 nitrile-specifier protein
Probab=91.78 E-value=20 Score=38.04 Aligned_cols=171 Identities=8% Similarity=0.007 Sum_probs=81.9
Q ss_pred CeEEEEEeCC-------CcEEEEECCCCeeeEEEe-C--Ce---eEEE-EecCCCEEEEEECC-----CeEEEEECCCCe
Q 008393 385 DDLICSCDGD-------GEIRYWSINNGSCTRVFK-G--GT---AQMR-FQPHLGRYLAAAAE-----NVVSILDAETQA 445 (567)
Q Consensus 385 ~~li~s~~~d-------g~I~iwd~~~~~~~~~~~-~--~~---~~~~-~~~~~~~l~~~~~d-----g~I~i~d~~~~~ 445 (567)
+.+++.|+.+ ..+.+||+.+.+....-. + +. ...+ ..-.+..++.++.+ +.+.+||+.+.+
T Consensus 176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 4566667643 347788988766443211 0 00 1111 12233344444443 468899998864
Q ss_pred EEEEecC----CCCCeeEEEEcCCCCEEEEEeCC------eEEEEeCCCCCCCceEEE---eecCCCceEEEEEeCCCCe
Q 008393 446 CRLSLQG----HTKPIDSVCWDPSGELLASVSED------SVRVWTVGSGSEGECVHE---LSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 446 ~~~~~~~----h~~~V~~l~~sp~g~~l~s~s~d------~I~iwd~~~~~~~~~i~~---~~~~~~~i~~~~~sp~~~~ 512 (567)
-...-.. ....-.+++. -++++++.|+.+ .+..||+.+.. ...+.. ....... ..++ .-+++.
T Consensus 256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~-W~~~~~~~~~~~~R~~-~~~~-~~~gki 331 (470)
T PLN02193 256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK-WFHCSTPGDSFSIRGG-AGLE-VVQGKV 331 (470)
T ss_pred EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-EEeCCCCCCCCCCCCC-cEEE-EECCcE
Confidence 4321111 1111122222 355666666643 36778876531 111110 0000111 1122 235666
Q ss_pred EEEEEcC----CeEEEEECCCCcEEEeccc-----cCCeeEEEEecCCCEEEEEECC
Q 008393 513 LLVIGCY----QSLELWNMSENKTMTLTAH-----EGLIAALAVSTETGYVASASHD 560 (567)
Q Consensus 513 l~~~~~d----g~I~iwd~~~~~~~~~~~h-----~~~V~~l~~spdg~~l~s~s~D 560 (567)
+++++.+ ..|.+||+.+.+...+... .....++ ..-++++++.|+.+
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~GG~~ 387 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFGGEI 387 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEECCcc
Confidence 6666655 4699999998876654322 1111222 23356777777753
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=91.68 E-value=23 Score=38.57 Aligned_cols=195 Identities=12% Similarity=0.161 Sum_probs=99.6
Q ss_pred EECCCCCeEEEEeCCCcEEEEEcCCCCceeEEec-cCCCcEEEEEEcCC--CCeEEEEEeCCCc-EEEEECCCC------
Q 008393 336 RFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFM-GHSASVMSLDFHPN--KDDLICSCDGDGE-IRYWSINNG------ 405 (567)
Q Consensus 336 ~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~~p~--~~~li~s~~~dg~-I~iwd~~~~------ 405 (567)
.++|+.+.+-.|=....|.-|=+.-..+.+..+. .....|.||..... +..+++.|-.++. -++--+..+
T Consensus 34 ~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~ 113 (670)
T PF10395_consen 34 DFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTED 113 (670)
T ss_pred ccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccc
Confidence 5566666665555444555554443233333222 23455666665432 2334445533332 333333222
Q ss_pred ---------eeeEEEeCCeeEEEEecCCCEEEEEECCCeEEEEECCCC--eEEEEecC-CCCCeeEEEEcC------CCC
Q 008393 406 ---------SCTRVFKGGTAQMRFQPHLGRYLAAAAENVVSILDAETQ--ACRLSLQG-HTKPIDSVCWDP------SGE 467 (567)
Q Consensus 406 ---------~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~--~~~~~~~~-h~~~V~~l~~sp------~g~ 467 (567)
+....++..+..+.+..++..+++...+|.|.+||...+ +.+..+.. +...+.-=+|-+ ...
T Consensus 114 ~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~ 193 (670)
T PF10395_consen 114 GTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKD 193 (670)
T ss_pred cccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCc
Confidence 112234566777889999999999999999999999332 22112221 222111112222 123
Q ss_pred EEEEEeC---C--eEEEEeCCCCCCCceEEEee---cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE
Q 008393 468 LLASVSE---D--SVRVWTVGSGSEGECVHELS---CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM 533 (567)
Q Consensus 468 ~l~s~s~---d--~I~iwd~~~~~~~~~i~~~~---~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~ 533 (567)
++++.+. + ..+++.+.. ....+.++. .+......+.|......|+.- .++.|.+|++...+..
T Consensus 194 ~ll~v~~~~~~k~~ykL~~l~~--~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~ 264 (670)
T PF10395_consen 194 LLLTVSQLSNSKLSYKLISLSN--ESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ 264 (670)
T ss_pred eEEEEEEcCCCcEEEEEEEecc--CCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence 4443333 2 688888821 112333332 333334444554444445544 6779999999877654
No 474
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=91.64 E-value=32 Score=40.06 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=15.6
Q ss_pred CCCCCeeEEEEcCCCCEEEEEeCC
Q 008393 452 GHTKPIDSVCWDPSGELLASVSED 475 (567)
Q Consensus 452 ~h~~~V~~l~~sp~g~~l~s~s~d 475 (567)
.|-..+.++|.+|||..+++-..+
T Consensus 659 A~lnsp~alaVsPdg~v~IAD~gN 682 (1899)
T KOG4659|consen 659 AKLNSPYALAVSPDGDVIIADSGN 682 (1899)
T ss_pred cccCCcceEEECCCCcEEEecCCc
Confidence 345566778888888766654443
No 475
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.62 E-value=2 Score=49.19 Aligned_cols=73 Identities=10% Similarity=0.197 Sum_probs=49.0
Q ss_pred eecCCCceEEEEEeCCCCeEEEEEcCCeEEE--EECCCC---c------------------EEEec-cccCCeeEEEEec
Q 008393 494 LSCNGNKFHSCVFHPTYPSLLVIGCYQSLEL--WNMSEN---K------------------TMTLT-AHEGLIAALAVST 549 (567)
Q Consensus 494 ~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~i--wd~~~~---~------------------~~~~~-~h~~~V~~l~~sp 549 (567)
+...+..|.++....+|+ |+.+|.||.|+= |....+ + ...+. .+..+|..+++..
T Consensus 174 i~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 174 ISVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred eecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 344466788888777777 555666664432 222221 0 11233 5677999999988
Q ss_pred CCCEEEEEECCCcEEEcC
Q 008393 550 ETGYVASASHDKFVKLWK 567 (567)
Q Consensus 550 dg~~l~s~s~Dg~I~iWd 567 (567)
....+.+-++.|+|.+||
T Consensus 253 SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred ccceeeeeccCceEEEEE
Confidence 888899999999999996
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.38 E-value=1.6 Score=40.92 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=46.1
Q ss_pred EEEecCCCEEEEEECCCeEEEEECCCCeEEEEe-------c-------CCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCC
Q 008393 418 MRFQPHLGRYLAAAAENVVSILDAETQACRLSL-------Q-------GHTKPIDSVCWDPSGELLASVSEDSVRVWTVG 483 (567)
Q Consensus 418 ~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~-------~-------~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~ 483 (567)
+.+...+.++++.+.+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+.+..+.|+..
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~ 95 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPD 95 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccc
Confidence 334455667777777777777777776654332 1 24467888888888988888777777888875
Q ss_pred C
Q 008393 484 S 484 (567)
Q Consensus 484 ~ 484 (567)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 3
No 477
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.10 E-value=2.8 Score=43.15 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=41.0
Q ss_pred eeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCC
Q 008393 322 KTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSA 373 (567)
Q Consensus 322 ~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~ 373 (567)
...+......+.+|..+|++++.++...=|.|.++|+.+ +..++.++|..+
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~-~~vvrmWKGYRd 350 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVAR-GIVVRMWKGYRD 350 (415)
T ss_pred EEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCC-ChhhhhhccCcc
Confidence 344555666789999999999888888889999999998 777777777654
No 478
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.05 E-value=6.8 Score=42.96 Aligned_cols=110 Identities=14% Similarity=0.101 Sum_probs=68.8
Q ss_pred eeEEEEc--CCCCEEEEEeCC-eEEEEeCCCC-----------C------CCceEEEeecCCCceEEEEEe--CCCCeEE
Q 008393 457 IDSVCWD--PSGELLASVSED-SVRVWTVGSG-----------S------EGECVHELSCNGNKFHSCVFH--PTYPSLL 514 (567)
Q Consensus 457 V~~l~~s--p~g~~l~s~s~d-~I~iwd~~~~-----------~------~~~~i~~~~~~~~~i~~~~~s--p~~~~l~ 514 (567)
|+.|... -+..+|+.|.+| .|.+|.+++- . ..++...+. .+...++++++ ...++||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEE
Confidence 4444433 355677788887 9999976321 0 011222222 24468899998 7777777
Q ss_pred EEEcCCeEEEEECCC--CcEEE--eccccCCeeEEEEecCC---C---EEEEEECCCcEEEcC
Q 008393 515 VIGCYQSLELWNMSE--NKTMT--LTAHEGLIAALAVSTET---G---YVASASHDKFVKLWK 567 (567)
Q Consensus 515 ~~~~dg~I~iwd~~~--~~~~~--~~~h~~~V~~l~~spdg---~---~l~s~s~Dg~I~iWd 567 (567)
+++....|.||-+.. .+... -..|...|-+|+|-++. . +|++++-.|.+.+|+
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 777777777665443 22221 22466779999996644 2 788888899988874
No 479
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=90.96 E-value=16 Score=38.84 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=74.2
Q ss_pred CCCcEEEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeCCCcEEEEEcCCCCceeEEeccCCCc---EEEEEEcCC
Q 008393 307 HDKKAVLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDADNPGYSLRTFMGHSAS---VMSLDFHPN 383 (567)
Q Consensus 307 ~dg~I~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~~p~ 383 (567)
..+.+.++|. +|..+..+.........+.+.++|.+++... ..++.+|+.. +.+..+.-.... =..+.+.|+
T Consensus 126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G--~v~~~~~l~~~~~~~HHD~~~l~n 200 (477)
T PF05935_consen 126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG--KVIWEYDLPGGYYDFHHDIDELPN 200 (477)
T ss_dssp BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----EEEEEE--TTEE-B-S-EEE-TT
T ss_pred CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC--CEEEeeecCCcccccccccEECCC
Confidence 3455556664 3455554443222222266778888777665 6688888863 343333322211 245677888
Q ss_pred CCeEEEEEe-------C-----CCcEEEEECCCCeeeEEEe------------------------------CCeeEEEEe
Q 008393 384 KDDLICSCD-------G-----DGEIRYWSINNGSCTRVFK------------------------------GGTAQMRFQ 421 (567)
Q Consensus 384 ~~~li~s~~-------~-----dg~I~iwd~~~~~~~~~~~------------------------------~~~~~~~~~ 421 (567)
|+.|+++.. . .-.|..+| .+|+.+..+. .|...+.+.
T Consensus 201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd 279 (477)
T PF05935_consen 201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD 279 (477)
T ss_dssp S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence 876665541 0 12355556 6666554421 146778899
Q ss_pred cCCCEEEEEECC-CeEEEEECCCCeEEEEecCCC
Q 008393 422 PHLGRYLAAAAE-NVVSILDAETQACRLSLQGHT 454 (567)
Q Consensus 422 ~~~~~l~~~~~d-g~I~i~d~~~~~~~~~~~~h~ 454 (567)
+..+.+++.+.. ..|..+|.++++....+-.+.
T Consensus 280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 977888888885 499999999999988887654
No 480
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.93 E-value=2.3 Score=47.92 Aligned_cols=121 Identities=13% Similarity=0.061 Sum_probs=73.3
Q ss_pred CeEEEEECCCCeEE-----EEecCC------CCCeeEEEEcCCCC-EEEEEeCC-eEEEEeCCCCCCCceEEEeecCCCc
Q 008393 434 NVVSILDAETQACR-----LSLQGH------TKPIDSVCWDPSGE-LLASVSED-SVRVWTVGSGSEGECVHELSCNGNK 500 (567)
Q Consensus 434 g~I~i~d~~~~~~~-----~~~~~h------~~~V~~l~~sp~g~-~l~s~s~d-~I~iwd~~~~~~~~~i~~~~~~~~~ 500 (567)
-.|+.||+++.... .-|..| .....++.|.|.-. ..+.+..| .|++..+.-.. ..+.. -.....
T Consensus 124 ~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~--~~v~s-~p~t~~ 200 (1405)
T KOG3630|consen 124 EAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLA--QNVTS-FPVTNS 200 (1405)
T ss_pred ceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhh--hhhcc-cCcccc
Confidence 37788888764211 111111 23355777887532 23444555 77777664221 11112 123456
Q ss_pred eEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec---c-ccCCeeEEEEecCCCEEEEE
Q 008393 501 FHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT---A-HEGLIAALAVSTETGYVASA 557 (567)
Q Consensus 501 i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~---~-h~~~V~~l~~spdg~~l~s~ 557 (567)
.++++|+|.|+.+++|-..|++.-|...-.....+. . ....|.+|+|-....+|++-
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 789999999999999999999988876544322221 1 14679999998777776653
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.53 E-value=4.5 Score=41.91 Aligned_cols=28 Identities=21% Similarity=0.650 Sum_probs=14.6
Q ss_pred eeEEEEcCCC---CEEEEEeCC-eEEEEeCCC
Q 008393 457 IDSVCWDPSG---ELLASVSED-SVRVWTVGS 484 (567)
Q Consensus 457 V~~l~~sp~g---~~l~s~s~d-~I~iwd~~~ 484 (567)
+..++|+|+. ..|..-+.| .||+||+..
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence 4455666643 233334444 666666643
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.49 E-value=22 Score=40.29 Aligned_cols=80 Identities=11% Similarity=0.057 Sum_probs=42.0
Q ss_pred CCcEEEEEcCCCCceeEEecc--CCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeCCe---eEEEEecCC
Q 008393 350 DKTVRVWDADNPGYSLRTFMG--HSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKGGT---AQMRFQPHL 424 (567)
Q Consensus 350 dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~ 424 (567)
+|.++.|++-..+..+..+.. -.+.| .+.+|..+++++ +-...+++||+..++.++..+... ........+
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~La--gvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~ 986 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLA--GVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTYG 986 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEE--ecccEEEEeeCChHHHHhhhhhccCceEEEEEeecc
Confidence 455777776655554443332 22333 344555565553 345689999988777665433221 112233334
Q ss_pred CEEEEEECC
Q 008393 425 GRYLAAAAE 433 (567)
Q Consensus 425 ~~l~~~~~d 433 (567)
.+++++...
T Consensus 987 ~RI~VgD~q 995 (1205)
T KOG1898|consen 987 ARIVVGDIQ 995 (1205)
T ss_pred eEEEEeecc
Confidence 566666553
No 483
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.44 E-value=21 Score=35.82 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred CCCeeEEEEcCCCCEEEEEeCC--------e-------EEEEeCCCCC----CCceEEEeec-----CCCceEEEEEeCC
Q 008393 454 TKPIDSVCWDPSGELLASVSED--------S-------VRVWTVGSGS----EGECVHELSC-----NGNKFHSCVFHPT 509 (567)
Q Consensus 454 ~~~V~~l~~sp~g~~l~s~s~d--------~-------I~iwd~~~~~----~~~~i~~~~~-----~~~~i~~~~~sp~ 509 (567)
.....+|+++|+|+.|+++.+. . ++++.+.... .......+.. ....+..+.+-++
T Consensus 146 N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d 225 (326)
T PF13449_consen 146 NRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPD 225 (326)
T ss_pred CCCeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECC
Confidence 3457788888888855554321 1 4555443322 1122333332 4567888999999
Q ss_pred CCeEEE
Q 008393 510 YPSLLV 515 (567)
Q Consensus 510 ~~~l~~ 515 (567)
+++|+.
T Consensus 226 ~~lLvL 231 (326)
T PF13449_consen 226 GRLLVL 231 (326)
T ss_pred CcEEEE
Confidence 985554
No 484
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=90.03 E-value=30 Score=37.06 Aligned_cols=243 Identities=12% Similarity=0.121 Sum_probs=116.9
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCee--eeeeccc-CccEEEEEECCCC-CeEEEEeCCCcEEEEEcCCC-CceeEEecc
Q 008393 296 SSDGKLLATGGHDKKAVLWHTDTLKS--KTNLEEH-SSLITDVRFSPSM-PRLATSSFDKTVRVWDADNP-GYSLRTFMG 370 (567)
Q Consensus 296 s~dg~~lasg~~dg~I~vwd~~~~~~--~~~l~~h-~~~V~~i~fsp~~-~~l~s~s~dg~I~iwd~~~~-~~~~~~~~~ 370 (567)
..++..++.+..+|.+....+..... ....-+. .....++.+..++ .+|+.|+.-|.=.++.+... -..+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~- 297 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP- 297 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-
Confidence 45677888999999998887764331 1122122 4455666666554 47788877554444444321 22333333
Q ss_pred CCCcEEEEEEcCC---CC-------eEEEEEe--CCCcEEEEECCCCeeeE--E---Ee-CCeeEEEEecC----CCEEE
Q 008393 371 HSASVMSLDFHPN---KD-------DLICSCD--GDGEIRYWSINNGSCTR--V---FK-GGTAQMRFQPH----LGRYL 428 (567)
Q Consensus 371 h~~~V~~l~~~p~---~~-------~li~s~~--~dg~I~iwd~~~~~~~~--~---~~-~~~~~~~~~~~----~~~l~ 428 (567)
.-++|.++++... +. .++++++ .+|.+++..- |-... . .. .++..+-..+. ..+++
T Consensus 298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~--Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv 375 (504)
T PF10433_consen 298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN--GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLV 375 (504)
T ss_dssp ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE--SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEE
T ss_pred CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec--cCCceeeeeeccCCCCceEEEEeeecCCCceEEE
Confidence 4578888888532 12 4554443 4677887742 22222 1 11 11222221111 23444
Q ss_pred EEECCCeEEEEECC---CCeEEEEec--C---CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeec-CCC
Q 008393 429 AAAAENVVSILDAE---TQACRLSLQ--G---HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSC-NGN 499 (567)
Q Consensus 429 ~~~~dg~I~i~d~~---~~~~~~~~~--~---h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~-~~~ 499 (567)
.+.. ..-.++.+. ..+.+..+. + ....+.+-.+. +..++=.....|++.+.... +....... .+.
T Consensus 376 ~S~~-~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~ 449 (504)
T PF10433_consen 376 LSFP-NETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGS 449 (504)
T ss_dssp EEES-SEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS-
T ss_pred EEcC-CceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCC
Confidence 4444 333444442 333332221 1 11223322332 56677777778889987654 34433322 333
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEE-Eec-----cccCCeeEEEEec
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTM-TLT-----AHEGLIAALAVST 549 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~-~~~-----~h~~~V~~l~~sp 549 (567)
.|.++++ ++.+++++..++.+.++.+...... ... .....|.|+...|
T Consensus 450 ~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp --SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred eEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3444444 3456888888889999988777654 111 2567888888766
No 485
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.61 E-value=32 Score=36.81 Aligned_cols=224 Identities=15% Similarity=0.161 Sum_probs=107.6
Q ss_pred CCCCCeEEEEeCCCcEEEEEcCCCCc-eeEEeccC-CCcEEEEEEcCCCCeEEEEEeC--CCcEEEEECCCCeeeEEEe-
Q 008393 338 SPSMPRLATSSFDKTVRVWDADNPGY-SLRTFMGH-SASVMSLDFHPNKDDLICSCDG--DGEIRYWSINNGSCTRVFK- 412 (567)
Q Consensus 338 sp~~~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~h-~~~V~~l~~~p~~~~li~s~~~--dg~I~iwd~~~~~~~~~~~- 412 (567)
..++..++.+..+|.+....+...+. .....-+. .....++.+..++..+++.|+. |+.+..|....-+.+..+.
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N 298 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN 298 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence 45677899999999999888876332 12222222 4556677877665345556665 5556666654455555555
Q ss_pred -CCeeEEEEecC----CC------EEEEEEC---CCeEEEEECCCCeE--EEEecCC--CCCeeEEEEcC-CCCEEEEEe
Q 008393 413 -GGTAQMRFQPH----LG------RYLAAAA---ENVVSILDAETQAC--RLSLQGH--TKPIDSVCWDP-SGELLASVS 473 (567)
Q Consensus 413 -~~~~~~~~~~~----~~------~l~~~~~---dg~I~i~d~~~~~~--~~~~~~h--~~~V~~l~~sp-~g~~l~s~s 473 (567)
+++..+++... .. .+++++. +|.++++.-.-+-. ......- -..++.+.... ++.+|+...
T Consensus 299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~ 378 (504)
T PF10433_consen 299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF 378 (504)
T ss_dssp --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence 36666665421 22 6677665 57887774322211 1111111 22344444322 256888887
Q ss_pred CCeEEEEeCCCCCCCceEEEe-----ecCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEe--ccccCCeeEEE
Q 008393 474 EDSVRVWTVGSGSEGECVHEL-----SCNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTL--TAHEGLIAALA 546 (567)
Q Consensus 474 ~d~I~iwd~~~~~~~~~i~~~-----~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~--~~h~~~V~~l~ 546 (567)
.+.-+++.+..+.....+..+ ......+.+..+. +..++=.. ...|++.+....+.... ......|.+.+
T Consensus 379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~ 455 (504)
T PF10433_consen 379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAAS 455 (504)
T ss_dssp SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence 775556655311111222221 1112223222222 33333333 34688888877766522 22344555555
Q ss_pred EecCCCEEEEEECCCcEEEc
Q 008393 547 VSTETGYVASASHDKFVKLW 566 (567)
Q Consensus 547 ~spdg~~l~s~s~Dg~I~iW 566 (567)
+. +.+++.+-.++.+.++
T Consensus 456 ~~--~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 456 IN--DPQVLVALSGGELVYF 473 (504)
T ss_dssp ES--SSEEEEEE-TTEEEEE
T ss_pred EC--CCEEEEEEeCCcEEEE
Confidence 43 3455555556666543
No 486
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.39 E-value=1.7 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=23.6
Q ss_pred CcEEEEEEcCCCC--eEEEEEeCCCcEEEEECCC
Q 008393 373 ASVMSLDFHPNKD--DLICSCDGDGEIRYWSINN 404 (567)
Q Consensus 373 ~~V~~l~~~p~~~--~li~s~~~dg~I~iwd~~~ 404 (567)
+.|.++.|+|... .|++..-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578888887544 5776766778888888885
No 487
>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C.elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.
Probab=89.29 E-value=0.11 Score=49.98 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCcccccCCCCC
Q 008393 47 SVGDVVSNVGSPLP 60 (567)
Q Consensus 47 ~~~~~~~~~~~~~~ 60 (567)
...+++|...||+.
T Consensus 284 ~~e~~~et~ksp~~ 297 (468)
T PF11498_consen 284 FTEPVVETNKSPSE 297 (468)
T ss_dssp --------------
T ss_pred hcCCccccccCccc
Confidence 44556666777775
No 488
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.06 E-value=3.1 Score=47.81 Aligned_cols=152 Identities=11% Similarity=0.245 Sum_probs=93.8
Q ss_pred EEEEEcCCCCeEEEEEeCCCcEEEEECCCCeeeEEEeC---CeeEE--------EEecCCCEEEEEECCCeEEEEECC--
Q 008393 376 MSLDFHPNKDDLICSCDGDGEIRYWSINNGSCTRVFKG---GTAQM--------RFQPHLGRYLAAAAENVVSILDAE-- 442 (567)
Q Consensus 376 ~~l~~~p~~~~li~s~~~dg~I~iwd~~~~~~~~~~~~---~~~~~--------~~~~~~~~l~~~~~dg~I~i~d~~-- 442 (567)
..+-+.|.=.+..+| .|+.+.+|+.+++.....+.+ .+..+ .|.+.-.++++.+..-.|.++-+.
T Consensus 82 ~~mGiFpeI~RaWiT--iDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~ 159 (1311)
T KOG1900|consen 82 TDMGIFPEIGRAWIT--IDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFD 159 (1311)
T ss_pred eeeccchhhcceEEE--eCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEec
Confidence 344444443333334 488999999999665555543 22222 255555677777777666666432
Q ss_pred --CCeE-----EEEecCCCCCeeEEEEcCCCCEEEEEeCCeEE--EEeCCCC---C--CCc------------eEEEee-
Q 008393 443 --TQAC-----RLSLQGHTKPIDSVCWDPSGELLASVSEDSVR--VWTVGSG---S--EGE------------CVHELS- 495 (567)
Q Consensus 443 --~~~~-----~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~--iwd~~~~---~--~~~------------~i~~~~- 495 (567)
++.. ..++......|.||....+|+++++|-+|.|+ +|....+ + ... .+..+.
T Consensus 160 ~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~ 239 (1311)
T KOG1900|consen 160 EFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPG 239 (1311)
T ss_pred cccCcccccccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCC
Confidence 2111 12222335678899988899999888887432 2222221 0 000 011222
Q ss_pred cCCCceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 496 CNGNKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 496 ~~~~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
.+..+|..+.+...-..+++-+..++|.+||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567899999999999999999999999999986
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.97 E-value=13 Score=38.71 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=23.4
Q ss_pred CceEEEEEeCCCCeEEEEEcCCeEEEEECCC
Q 008393 499 NKFHSCVFHPTYPSLLVIGCYQSLELWNMSE 529 (567)
Q Consensus 499 ~~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~ 529 (567)
..|..++..+..+.+++...++.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3477778888888899999999999999974
No 490
>PF06752 E_Pc_C: Enhancer of Polycomb C-terminus; InterPro: IPR009607 This entry represents the C terminus of eukaryotic enhancer of polycomb proteins, which have roles in heterochromatin formation []. This family contains several conserved motifs.
Probab=88.91 E-value=0.19 Score=45.65 Aligned_cols=10 Identities=60% Similarity=0.521 Sum_probs=7.6
Q ss_pred HHHHHHHHHH
Q 008393 80 AQMHQQQQQQ 89 (567)
Q Consensus 80 ~q~~qqqqqq 89 (567)
+|+|||+|||
T Consensus 4 ~EQyQqHQqQ 13 (230)
T PF06752_consen 4 AEQYQQHQQQ 13 (230)
T ss_pred HHHHHHHHHH
Confidence 5788887777
No 491
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.67 E-value=5.2 Score=43.85 Aligned_cols=104 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred CCCeEEEEeCCCcEEEEeCCC-------C-------------eeeeeecccCccEEEEEEC--CCCCeEEEEeCCCcEEE
Q 008393 298 DGKLLATGGHDKKAVLWHTDT-------L-------------KSKTNLEEHSSLITDVRFS--PSMPRLATSSFDKTVRV 355 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~-------~-------------~~~~~l~~h~~~V~~i~fs--p~~~~l~s~s~dg~I~i 355 (567)
+...|+.+..||.|.+|.+++ . ++...+. ....++.++++ ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556899999999999996631 1 0112222 34478999998 77888999988888888
Q ss_pred EEcCCC--CceeEEeccCCCcEEEEEEcCCC-----CeEEEEEeCCCcEEEEEC
Q 008393 356 WDADNP--GYSLRTFMGHSASVMSLDFHPNK-----DDLICSCDGDGEIRYWSI 402 (567)
Q Consensus 356 wd~~~~--~~~~~~~~~h~~~V~~l~~~p~~-----~~li~s~~~dg~I~iwd~ 402 (567)
|-+... ......-..|...|.+|+|.++. ...+++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 866541 11111112366779999997654 126667888999999887
No 492
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=88.24 E-value=28 Score=34.40 Aligned_cols=229 Identities=13% Similarity=0.023 Sum_probs=109.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCC--CeeeeeecccCccEEEEEECCCCCeEEEEe-CCCcEEEEEcCCCCc-----------
Q 008393 298 DGKLLATGGHDKKAVLWHTDT--LKSKTNLEEHSSLITDVRFSPSMPRLATSS-FDKTVRVWDADNPGY----------- 363 (567)
Q Consensus 298 dg~~lasg~~dg~I~vwd~~~--~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s-~dg~I~iwd~~~~~~----------- 363 (567)
++++|+.|+.+|...+. +.. .+....+ +...|+++...+..+.|++-+ ....++++++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 44689999988866655 543 2333333 456799999988877666555 344599999843110
Q ss_pred ---eeEEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC--e--eeEEE---e---C-CeeEEEEecC--CCEE
Q 008393 364 ---SLRTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG--S--CTRVF---K---G-GTAQMRFQPH--LGRY 427 (567)
Q Consensus 364 ---~~~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~--~--~~~~~---~---~-~~~~~~~~~~--~~~l 427 (567)
......+|........+......+++.+.....|.++.+... + ..+.+ . . ....+..++. ...+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 011122344434444444222223334444566776644332 1 12211 0 1 1112222222 4567
Q ss_pred EEEECCCeEEEEECCC--CeEE-----EEecCCC-CCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCCCceEEEeecCCC
Q 008393 428 LAAAAENVVSILDAET--QACR-----LSLQGHT-KPIDSVCWDPSGELLASVSEDSVRVWTVGSGSEGECVHELSCNGN 499 (567)
Q Consensus 428 ~~~~~dg~I~i~d~~~--~~~~-----~~~~~h~-~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~~~~i~~~~~~~~ 499 (567)
++|+..+...++++.. .... ....... .++ ++..-+++.+|+ +-++...+.|...... .....+.- ..
T Consensus 169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~-~r~~~l~w-~~ 244 (302)
T smart00036 169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLL-CYDEFGVFVNLYGKRR-SRNPILHW-EF 244 (302)
T ss_pred EEEEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEE-EECcEEEEEeCCCCcc-ccceEEEc-CC
Confidence 7776653344444422 1000 0011111 233 333334554444 4555444445442111 11112221 23
Q ss_pred ceEEEEEeCCCCeEEEEEcCCeEEEEECCCCcEEEec
Q 008393 500 KFHSCVFHPTYPSLLVIGCYQSLELWNMSENKTMTLT 536 (567)
Q Consensus 500 ~i~~~~~sp~~~~l~~~~~dg~I~iwd~~~~~~~~~~ 536 (567)
...++++. ..+|++.. +..|.++++.+++.+...
T Consensus 245 ~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i 278 (302)
T smart00036 245 MPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQEL 278 (302)
T ss_pred cccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEE
Confidence 34555665 35666665 456999999999876433
No 493
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=88.24 E-value=0.42 Score=53.41 Aligned_cols=8 Identities=0% Similarity=0.036 Sum_probs=5.2
Q ss_pred hhhhhhhh
Q 008393 24 ESRRFRML 31 (567)
Q Consensus 24 ~~~~~~~~ 31 (567)
.+.|-.|+
T Consensus 1787 sp~~a~~i 1794 (2131)
T KOG4369|consen 1787 SPQGASTI 1794 (2131)
T ss_pred CCCCCccc
Confidence 56666665
No 494
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=87.89 E-value=13 Score=35.41 Aligned_cols=139 Identities=16% Similarity=0.175 Sum_probs=73.5
Q ss_pred EEEeCCCCeeeeeecccCccEEEEEECCCCCeEEEEeC-C--CcEEEEEcCC-CCce-eEEe---ccCCCcEEEEEEcCC
Q 008393 312 VLWHTDTLKSKTNLEEHSSLITDVRFSPSMPRLATSSF-D--KTVRVWDADN-PGYS-LRTF---MGHSASVMSLDFHPN 383 (567)
Q Consensus 312 ~vwd~~~~~~~~~l~~h~~~V~~i~fsp~~~~l~s~s~-d--g~I~iwd~~~-~~~~-~~~~---~~h~~~V~~l~~~p~ 383 (567)
.+||+.+.+....-....-.+..-.|.+||++|.+|+. + ..|++++... ...+ .... -.....--+....+|
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 46777766554332233334445567889999999876 2 3478887653 1111 1110 011222234455678
Q ss_pred CCeEEEEEeCCCcEEEEECCCC-e-eeE-EEeC--------C-eeEEEEecCCCEEEEEECCCeEEEEECCCCeEEEEec
Q 008393 384 KDDLICSCDGDGEIRYWSINNG-S-CTR-VFKG--------G-TAQMRFQPHLGRYLAAAAENVVSILDAETQACRLSLQ 451 (567)
Q Consensus 384 ~~~li~s~~~dg~I~iwd~~~~-~-~~~-~~~~--------~-~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~~~~~~~ 451 (567)
|+-+|+.|...-...+|.-... . ... .+-. . -..+...|+|+.++.+..+ -.|||..+.+.++.+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 8766655554445556654321 1 111 1111 1 1235567887777766654 3456888887766665
Q ss_pred C
Q 008393 452 G 452 (567)
Q Consensus 452 ~ 452 (567)
.
T Consensus 207 ~ 207 (243)
T PF07250_consen 207 D 207 (243)
T ss_pred C
Confidence 4
No 495
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=87.67 E-value=9.8 Score=38.15 Aligned_cols=43 Identities=21% Similarity=0.070 Sum_probs=33.1
Q ss_pred EEcCCeEEEEECCCCcEEEeccccCCeeEEEEecCCCEEEEEE
Q 008393 516 IGCYQSLELWNMSENKTMTLTAHEGLIAALAVSTETGYVASAS 558 (567)
Q Consensus 516 ~~~dg~I~iwd~~~~~~~~~~~h~~~V~~l~~spdg~~l~s~s 558 (567)
+..+|.+.-||..+.....+...-...+.++.|||+.+++.|-
T Consensus 195 g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEe
Confidence 3345788999988887766655566678899999999988764
No 496
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.67 E-value=37 Score=35.05 Aligned_cols=108 Identities=13% Similarity=-0.001 Sum_probs=60.4
Q ss_pred CeeEEEEecCCCEEEEEECCCeEEEEECCCCe-----EEEEecC--CCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCC
Q 008393 414 GTAQMRFQPHLGRYLAAAAENVVSILDAETQA-----CRLSLQG--HTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGS 486 (567)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~dg~I~i~d~~~~~-----~~~~~~~--h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~ 486 (567)
....+.+.+++..++ ++..|.+..-+ ..++ ....... ....+..+.|.+++..+++|..+.+... ...++
T Consensus 282 ~l~~v~~~~dg~l~l-~g~~G~l~~S~-d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s-~D~G~ 358 (398)
T PLN00033 282 RIQNMGWRADGGLWL-LTRGGGLYVSK-GTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRS-TDGGK 358 (398)
T ss_pred ceeeeeEcCCCCEEE-EeCCceEEEec-CCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEe-CCCCc
Confidence 345667777755554 44556554432 2221 1222221 1235888999999888887777644443 33343
Q ss_pred CCceEEEeecCCCceEEEEEeCCCCeEEEEEcCCeEEEE
Q 008393 487 EGECVHELSCNGNKFHSCVFHPTYPSLLVIGCYQSLELW 525 (567)
Q Consensus 487 ~~~~i~~~~~~~~~i~~~~~sp~~~~l~~~~~dg~I~iw 525 (567)
..............++.+.|.++++ .++.+.+|.|.-|
T Consensus 359 tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~ 396 (398)
T PLN00033 359 SWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY 396 (398)
T ss_pred ceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence 3233222223345677888877655 6777777877655
No 497
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.29 E-value=49 Score=37.54 Aligned_cols=117 Identities=11% Similarity=0.078 Sum_probs=75.3
Q ss_pred CCCeEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCe-----eeeeecccC----------ccEEEEEECCCCCeEEEEeCC
Q 008393 287 TSKVICCHFSS-DGKLLATGGHDKKAVLWHTDTLK-----SKTNLEEHS----------SLITDVRFSPSMPRLATSSFD 350 (567)
Q Consensus 287 ~~~V~~l~~s~-dg~~lasg~~dg~I~vwd~~~~~-----~~~~l~~h~----------~~V~~i~fsp~~~~l~s~s~d 350 (567)
..+...++|+| +.+.||+....|...||++.... .......+. ..-..|.|.++.+.|++++..
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~ 224 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS 224 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC
Confidence 34667899998 45689999999999999992111 111111111 223478898888888888765
Q ss_pred CcEEEEEcCCCCcee-EEeccCCCcEEEEEEcCCCCeEEEEEeCCCcEEEEECCCC
Q 008393 351 KTVRVWDADNPGYSL-RTFMGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNG 405 (567)
Q Consensus 351 g~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~~p~~~~li~s~~~dg~I~iwd~~~~ 405 (567)
. +.++|+++..... .........|..+.-++.....++.-. ...|...++...
T Consensus 225 ~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 225 K-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred c-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 5 8999998743311 222334577888888877333333332 467888888763
No 498
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=87.04 E-value=1.6 Score=46.24 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.4
Q ss_pred CccceeeeeeccCCCCeEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCee-----eeeeccc-----CccEEEEEECCCCC
Q 008393 274 GFSFKEANSVRASTSKVICCHFSSDGKLLATGGHDK-KAVLWHTDTLKS-----KTNLEEH-----SSLITDVRFSPSMP 342 (567)
Q Consensus 274 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~lasg~~dg-~I~vwd~~~~~~-----~~~l~~h-----~~~V~~i~fsp~~~ 342 (567)
-.++..+..|+.|+.+|..++|.+.|.+|++++..| .|.++.+..-.+ ...+..| ...|-.++|+....
T Consensus 302 f~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~ 381 (788)
T KOG2109|consen 302 FDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVST 381 (788)
T ss_pred ccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcc
Confidence 345677888999999999999999999999988655 455554421111 1111111 23455678888888
Q ss_pred eEEEEeCCCc
Q 008393 343 RLATSSFDKT 352 (567)
Q Consensus 343 ~l~s~s~dg~ 352 (567)
++..++.+|.
T Consensus 382 ~r~~gsc~Ge 391 (788)
T KOG2109|consen 382 IRTAGSCEGE 391 (788)
T ss_pred eEeecccCCC
Confidence 8888887764
No 499
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=86.84 E-value=27 Score=38.41 Aligned_cols=93 Identities=14% Similarity=0.263 Sum_probs=55.0
Q ss_pred eEEEEecCCCEEEEEECCC-----eEEEEECCC---CeEEEEecCCCCCeeEEEEcCCCCEEEEEeCCeEEEEeCCCCCC
Q 008393 416 AQMRFQPHLGRYLAAAAEN-----VVSILDAET---QACRLSLQGHTKPIDSVCWDPSGELLASVSEDSVRVWTVGSGSE 487 (567)
Q Consensus 416 ~~~~~~~~~~~l~~~~~dg-----~I~i~d~~~---~~~~~~~~~h~~~V~~l~~sp~g~~l~s~s~d~I~iwd~~~~~~ 487 (567)
..+.|-|.|..+++...|| .|.++..+. |+.-... +....+..++|+-....++.+..+.|++|-..+-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~-~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy-- 326 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRV-GCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY-- 326 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccC-CchhhhhhhhhhHHHHHHHHhhcceEEEEEccce--
Confidence 4578999999999887654 455554322 2221111 1234466788887777777777778999987542
Q ss_pred CceEEEeecCCCceEEEEEeCCCCe
Q 008393 488 GECVHELSCNGNKFHSCVFHPTYPS 512 (567)
Q Consensus 488 ~~~i~~~~~~~~~i~~~~~sp~~~~ 512 (567)
...-.....-..+.-+.|+|....
T Consensus 327 -hWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 327 -HWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred -EEEEEEeecCCCcceeeeccccCc
Confidence 222222223344556678886543
No 500
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.84 E-value=21 Score=37.25 Aligned_cols=26 Identities=15% Similarity=0.134 Sum_probs=20.6
Q ss_pred ccEEEEEECCCCCeEEEEeCCCcEEE
Q 008393 330 SLITDVRFSPSMPRLATSSFDKTVRV 355 (567)
Q Consensus 330 ~~V~~i~fsp~~~~l~s~s~dg~I~i 355 (567)
-.|..|..++.|..++-++.+|.+..
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vM 129 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVM 129 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEE
Confidence 34777888999999999999995443
Done!